Sample records for mf tempe bac

  1. Recombining overlapping BACs into single large BACs.

    Kotzamanis, George; Kotsinas, Athanassios


    BAC clones containing the entire genomic region of a gene including the long-range regulatory elements are very useful for gene functional analysis. However, large genes often span more than the insert of a BAC clone, and single BACs covering the entire region of interest are not available. Here, we describe a general system for linking two or more overlapping BACs into a single clone. Two rounds of homologous recombination are used. In the first, the BAC inserts are subcloned into the pBACLink vectors. In the second, the two BACs are combined together. Multiple BACs in a contig can be combined by alternating use of the pBACLInk vectors, resulting in several BAC clones containing as much of the genomic region of a gene as required. Such BACs can then be used in gene expression studies and/or gene therapy applications.

  2. Usaha Pemasaran Produsen Tempe

    R. Nana Kusdiana


    Full Text Available Tempe is a food made from the fermentation of soybeans or some other materials using somekind of fungus Rhizopus, such as Rhizopus oligosporus, Rh. oryzae, Rh. stolonifer or also known as bread mold, or Rh. arrhizus. Fermentation preparations are commonly known as "yeast tempe". Tempe has been known since ancient times, particularly in Java as supplement staple food which is high protein and low cholesterol. Tempe and tofu selling price is still low compared to other protein food sources, such as fish and chicken. According to market research, the majority of tempe and tofu products is still the lower class’ consumption, since the quality and processing methods are traditional distribution, including in sanitation and hygiene. It is necessary to stimulate and generate interest in the bank to develop relationship with the Indonesian Tofu Tempe Producers Cooperative (KOPTI and its members to tempe producers can increase production and performance. Tempe and Tofu Development Centers Manufacturers through Integrated Partnership Program by KOPTI as a company with a core group of tempe and tofu manufacturers, which are members of the KOPTI, is the modernization of tempe and tofu small business activity to be an independent food business industry.

  3. Le temps en images

    Callender, Craig


    Qu'est-ce que le temps ? Le célèbre philosophe du Ve siècle, St Augustin, a dit qu'il savait ce qu'était le temps, tant que personne ne le lui demandait... Le temps est-il une quatrième dimension similaire à l'espace ou s'écoule-t-il dans un certain sens ? Et si le temps passe, est-il sensé de dire à quelle vitesse ? Est-ce que l'avenir existe ? Voyager dans le temps est-il possible ? Ce livre aborde ces questions et d'autres parmi les plus profondes et plus subtiles que l'on puisse se poser sur cette notion essentielle dans notre vie.


    Schmeitz, A.J.C.; Besselink, I.J.M.; Jansen, S.T.H.


    In this paper, an overview of the TNO MF-SWIFT model is given. After an historical overview of the model development and the intended range of application, the model is described briefly. Next, the implementation in multibody and other simulation software is discussed, including also the available


    Hermana Hermana


    Full Text Available Tjara baru pembuatan tempe. (The new method of preparing tempeh. Gizi Indonesia, 2 : 167, 1970. The new method of preparing tempeh involves dehulling of soybean by a burr mill, cooking in water up to the boiling point, soaking in the water used to boil for 22 hours, washing, and reboiling in fresh water. After draining, the beans were left to cool, followed by inoculation with tempeh mold inoculum and wrapping in cheese cloth for 24 hours. Fermentation for 14 to 16 hours were allowed after bagging the beans in perforated polyethylene film having pin-holes one in four square centimeters. Tempeh made by the new method was of milder aroma than traditional tempeh. The keeping quality was three days. On the third day the colour of tempeh remained white, changes in texture and aroma were slight. Dalam usaha untuk lebih mempopulerkan tempe, kami mencari cara pembuatan tempe yang: (1 sederhana, mudah dilakukan dengan kemungkinan gagal sekecil-kecilnya dan (2 menghasilkan tempe yang baik yang dapat disimpan lebih lama dari pada tempe tradisional.

  6. Recombineering linear BACs.

    Chen, Qingwen; Narayanan, Kumaran


    Recombineering is a powerful genetic engineering technique based on homologous recombination that can be used to accurately modify DNA independent of its sequence or size. One novel application of recombineering is the assembly of linear BACs in E. coli that can replicate autonomously as linear plasmids. A circular BAC is inserted with a short telomeric sequence from phage N15, which is subsequently cut and rejoined by the phage protelomerase enzyme to generate a linear BAC with terminal hairpin telomeres. Telomere-capped linear BACs are protected against exonuclease attack both in vitro and in vivo in E. coli cells and can replicate stably. Here we describe step-by-step protocols to linearize any BAC clone by recombineering, including inserting and screening for presence of the N15 telomeric sequence, linearizing BACs in vivo in E. coli, extracting linear BACs, and verifying the presence of hairpin telomere structures. Linear BACs may be useful for functional expression of genomic loci in cells, maintenance of linear viral genomes in their natural conformation, and for constructing innovative artificial chromosome structures for applications in mammalian and plant cells.

  7. Recombining overlapping BACs into a single larger BAC

    Huxley Clare


    Full Text Available Abstract Background BAC clones containing entire mammalian genes including all the transcribed region and long range controlling elements are very useful for functional analysis. Sequenced BACs are available for most of the human and mouse genomes and in many cases these contain intact genes. However, large genes often span more than one BAC, and single BACs covering the entire region of interest are not available. Here we describe a system for linking two or more overlapping BACs into a single clone by homologous recombination. Results The method was used to link a 61-kb insert carrying the final 5 exons of the human CFTR gene onto a 160-kb BAC carrying the first 22 exons. Two rounds of homologous recombination were carried out in the EL350 strain of bacteria which can be induced for the Red genes. In the first round, the inserts of the two overlapping BACs were subcloned into modified BAC vectors using homologous recombination. In the second round, the BAC to be added was linearised with the very rare-cutting enzyme I-PpoI and electroporated into recombination efficient EL350 bacteria carrying the other BAC. Recombined BACs were identified by antibiotic selection and PCR screening and 10% of clones contained the correctly recombined 220-kb BAC. Conclusion The system can be used to link the inserts from any overlapping BAC or PAC clones. The original orientation of the inserts is not important and desired regions of the inserts can be selected. The size limit for the fragments recombined may be larger than the 61 kb used here and multiple BACs in a contig could be combined by alternating use of the two pBACLink vectors. This system should be of use to many investigators wishing to carry out functional analysis on large mammalian genes which are not available in single BAC clones.

  8. BacMet

    Pal, Chandan; Bengtsson-Palme, Johan; Rensing, Christopher Günther T;


    -selection. Information on metal and biocide resistance genes, including their sequences and molecular functions, is, however, scattered. Here, we introduce BacMet ( - a manually curated database of antibacterial biocide- and metal-resistance genes based on an in-depth review...

  9. SmartOrBAC



    Full Text Available The emergence of the Internet of Things (IoT paradigm, provides a huge scope for more streamlined living through an increase of smart services but this coincides with an increase in security and privacy concerns, therefore access control has been an important factor in the development of IoT. This work proposes an authorization access model called SmartOrBAC built around a set of security and performance requirements. This model enhances the existing OrBAC (Organization-based Access Control model and adapts it to IoT environments. SmartOrBAC separates the problem into different functional layers and then distributes processing costs between constrained devices and less constrained ones and at the same time addresses the collaborative aspect with a specific solution. This paper also presents the application of SmartOrBAC on a real example of IoT and gives a complexity study demonstrating that even though this model is extensive, it does not add additional complexity regarding traditional access control models.


    Made Astawan


    Full Text Available ABSTRACTThis research was conducted to compare physicochemical characteristics of germinated soybean tempe flour (GST flour and soybean tempe flour (ST flour. Soybean was germinated within 28 hours and then processed into tempe. Germinated soybean tempe and soybean tempe were freeze-dried for 26 hours, and then milled into GST flour and ST flour. The GST flour and ST flour were used for physical and chemical analysis. The used of germinated soybean was proven to affect the quality of flour. GST flour had 53.37 % db protein, 24.97 mg AEAC antioxidant capacity/100 g tempe, 5.08 mg tocopherol/100 g db, 81.75 mg isoflavone/100 g db, and minerals (Ca, P, Fe, Zn which were higher than that of the ST flour. GST flour also had better quality than that of ST flour, in term of: higher bulk density (0.42 g/ml, lower water activity (0.63, and lower repose angle (39.94o.Keywords: chemical characteristic, germinated soybean tempe, physical characteristic, soybean tempeABSTRAKPenelitian ini bertujuan mempelajari perbandingan karakteristik fisikokimia tepung tempe kecambah kedelai (tepung TKK dan tepung tempe kedelai (tepung TK. Kedelai dikecambahkan dalam waktu 28 jam, kemudian diproses menjadi tempe. Tempe kecambah kedelai dan tempe kedelai dikeringbekukan selama 26 jam, kemudian digiling menjadi tepung TKK dan tepung TK. Tepung TKK dan tepung TK digunakan untuk analisis fisik dan kimia. Penggunaan kecambah kedelai terbukti memengaruhi kualitas tempe. Tepung TKK memiliki 53,37 % bk protein, 24,97 mg AEAC kapasitas antioksidan/100 g tempe bk, 5,08 mg vitamin E/100 g bk, 81,75 mg isoflavon/100 g bk, dan beberapa mineral (Ca, P, Fe, Zn yang lebih tinggi dibandingkan Tepung TK. Tepung TKK juga mempunyai kualitas yang lebih baik dibandingkan tepung TK, yaitu dalam hal densitas kamba (0,42 g/ml yang lebih tinggi, serta aktivitas air (0,63 dan repose angle (39,94o yang lebih rendah.Kata kunci: karakteristik fisik, karakteristik kimia, tempe kedelai, tempe kecambah


    Mien Karmini


    Full Text Available Inokulum tempe yang lazim digunakan di Indonesia mengandung Rhizopus Sp. Penelitian terdahulu menemukan dua jenis bakteri penghasil vitamin B12, yaitu Citrobacter freundil dan Klebsiella pneumoniae, dan dua jenis bakteri penghasil Faktor-2, yaitu Corynebacterium Sp dan Micrococcus luteus dari air rendaman kedelai. Dalam penelitian ini dibuat inokulum tempe yang merupakan campuran kapang Rhizopus oligosporus dan masing-masing bakteri Klebsiella pneumoniae atau Citrobacter freundii mampu meningkatkan kadar vitamin B12 di dalam tempe lebih dari 100%. Inokulum campuran Rhizopus oligosporus dan Corynebacterium Sp atau Micrococcus luteus tidak menunjukkan adanya kandungan antioksidan Faktor-2 di dalam tempe.

  12. Ergonomic assessment of drivers in MF285 and MF399 tractors during clutching using algometer

    Hossein Fallahi


    The results showed that the clutching forces for MF285 and MF399 tractors were 340 N and 290 N, respectively. The knee angle of the drivers of the two tractors was statistically different at the one percent level of significance. The reduction of pain threshold after 30 and 60 s clutching and also 60 s rest after clutching in MF285 tractor, for all three muscles, were more than those of MF399 tractor. The impact of clutching on the average decreases of pain threshold, for all drivers and all clutching periods, during and after clutching, in the Quadratus lumborum muscle was more than the other two muscles, in both tractors. In order to reduce the clutching force for MF285 tractor some modifications is suggested. In this regard the force transfer joint between the pedal and the clutch release linkage may be replaced with one made of cast iron.

  13. NOAA Global Surface Temperature (NOAAGlobalTemp)

    National Oceanic and Atmospheric Administration, Department of Commerce — The NOAA Global Surface Temperature Dataset (NOAAGlobalTemp) is a merged land–ocean surface temperature analysis (formerly known as MLOST) (link is external). It is...


    Indrawati Gandjar


    Full Text Available Disamping kacang kedele dan kacang tanah sejumlah kacang-kacangan yang kurang dikenal juga dimakan penduduk daerah-daerah tertentu di Pulau Jawa. Diantaranya biji-biji koro benguk (Mucuna pruriens. Hasil fermentasi dari biji-biji ini dikenal sebagai tempe benguk.Dalam penelitian ini telah digunakan campuran biji koro benguk varitas abu-abu dan varitas hitam dalam perbandingan 1:1.Hasil isolasi mikroflora dari contoh-contoh tempe benguk yang dijual belikan ialah species dari marga (genus Rhizopus. Strain 90 II/3 dari desa Donomulyo Malang Selatan yang diidentifikasi sebagai R. arrhizus menghasilkan tempe benguk yang baik dan dipakai dalam penelitian ini.Telah dilakukan analisa zat gizi kedua varitas biji-biji koro benguk mentah, begitu pula dari substrat sebelum fermentasi dan tempe benguknya. Kadar protein dari tempe benguk dengan strain 90 II/3 ialah 14.1%.Proses perebusan, perendaman dan pengukusan telah menghilangkan seluruh HCN dalam substrat. Dari segi kandungan aflatoksin tempe benguk dalam penelitian ini tidak membahayakan karena kandungannya hanya 1.04 ppb.Hasil fermentasi biji-biji koro benguk dapat merupakan suatu sumber protein murah bagi penduduk yang makanan pokoknya terutama serealia dan umbi-umbian.


    R Rusdarti


    Full Text Available The presence of small craft industries tempe, is one of the economic pillars of the people who can provide added value economy in the city, as well as providing a significant contribution in expanding employment opportunities, as well as a force capable of improving the welfare of the people. The purpose of this study to describe the phenomenon of small industrial/tempe producers, potential and constraints of the economic empowerment of communities that can be applied and developed in a small industrial tempe, and formulate policies in accordance with the potential srategi small craft industries tempe in the city of Semarang. The results showed that: 1 The tendency of the phenomenon of changes in tempe crafter business patterns are relatively small and micro enterprises as well as conditions of low-quality human resources, which lead them to be low income, (2 Empowerment has changed the concept of economic and social development that has the potential of productive micro-economic basis. Factors expertise/ skill used in the production process significantly contributed 67.8 percent of industrial production on a small tempe. It shows the contribution of the most dominant in the small industrial tempe, that expertise is important in a small industrial tempe, (3 development strategy capable of mobilizing the various aspects of resources and the capacity and potential of the community, making empowerment can be implemented into the best tools in an effort to income artisans tempe city of Semarang. Recom­mended considering internal factors crafters tempe still weak and fundamentally, the crafters need to get guidance and the way in which one of them by learning from the experience and the concerns of various stakeholders.Keberadaan industri kecil perajin tempe, merupakan salah satu pilar ekonomi rakyat yang mampu memberikan nilai tambah ekonomi di Kota Semarang, serta memberikan sumbangan yang signifikan dalam memperluas lapangan kerja, sekaligus

  16. Bac clones generated from sheared dna

    Osoegawa, Kazutoyo; Vessere, Gery M.; Shu, Chung Li; Hoskins,Roger A.; Abad, Jose P.; de Pablos, Beatriz; Villasante, Alfredo; deJong, Pieter J.


    BAC libraries generated from restriction-digested genomic DNA display representational bias and lack some sequences. To facilitate completion of genome projects, procedures have been developed to create BACs from DNA physically sheared to create fragments extending up to 200kb. The DNA fragments were repaired to create blunt ends and ligated to a new BAC vector. This approach has been tested by generating BAC libraries from Drosophila DNA, with insert lengths of 50 kb to 150 kb. The libraries lack chimeric clone problems as determined by mapping paired BAC-end sequences of one library to the D. melanogaster genome sequence. The utility of ''sheared'' libraries was demonstrated by closure of a previous clone gap and by isolation of clones from telomeric regions, which were notably absent from previous Drosophila BAC libraries.


    Erwin Affandi


    Full Text Available Tempe adalah bahan makanan yang sudah populer di Indonesia. Selain sumber zat gizi yang bernilai tinggi, tempe juga diduga mempunyai khasiat lain.Penelitian ini bertujuan untuk mempelajari daya hambat zat antibakterial dalam tempe terhadap beberapa jenis bakteri termasuk bakteri penyebab diare.Pada prinsipnya dalam penelitian ini dipelajari pengaruh penambahan ekstrak tempe terhadap pertumbuhan bakteri. Jenis bakteri penguji diambil dua jenis gram-positif dan empat jenis gram-negatif. Tempe sebagai sumber zat antibakterial, berupa tempe yang dibuat dengan menggunakan Rhizopus oligosporus dalam bentuk biakan murni, usar dan laru; dua jenis yang terakhir ini dibeli dari pedagang tempe. Pengukuran pertumbuhan bakteri dilakukan dengan menggunakan Spectronic-20, Bausch dan Lomb.Hasil penelitian menunjukkan bahwa dalam tempe yang dibuat dengan biakan murni terdapat zat antibakterial yang dapat menghambat pertumbuhan bakteri.Dihasilkannya zat antibakterial tersebut pada proses fermentasi, sangat dipengaruhi oleh kemurnian jenis kapang dan media tempat pertumbuhan kapang.

  18. La photographie au temps de Baudelaire

    Nachtergael, Magali


    Conférence prononcée à l'Alliance Française de Turin dans le cadre de l'exposition "Paris au temps de Baudelaire" (25 mai-26 juin 2010, Turin, Italie).; Ce texte revient sur l'histoire des relations qu'entretenait Charles Baudelaire et la photographie mais aussi Nadar.

  19. Oblique rifting at Tempe Fossae, Mars

    Fernández, Carlos; Anguita, Francisco


    This work shows the results of a structural study of the faults observed at the Tempe Rift (northeastern Tharsis region), Mars. A new, detailed map of faults and fault systems was used to geometrically characterize the fracture architecture of the Tempe Rift and to measure fault length, displacement, and spacing data, to analyze the spatial distribution of fault centroids, and to investigate the fractal nature of fault trace maps. A comparison with analog models and the use of conventional techniques of fault population analysis show that the Tempe Rift was most probably generated under sinistral oblique-rifting processes, which highlights the importance of the presence of inherited fractures in the tectonic evolution of the Noachian crust. The angle between the extension direction and the rift axis varies along the Tempe Rift, ranging from 50°-60° at its central southern part to 66°-88° to the southwest. Fault scaling relationships are similar to those found at mid-ocean ridges on Earth with exponential fault length-frequency distributions. Localized, inhomogeneous deformation generated weakly interacting faults, spanning the entire thickness of the mechanical layer. This thickness decreased from southwest to northeast along the rift, along with distance from the central part of the Tharsis dome.

  20. Herpesvirus BACs: past, present, and future.

    Warden, Charles; Tang, Qiyi; Zhu, Hua


    The herpesviridae are a large family of DNA viruses with large and complicated genomes. Genetic manipulation and the generation of recombinant viruses have been extremely difficult. However, herpesvirus bacterial artificial chromosomes (BACs) that were developed approximately 10 years ago have become useful and powerful genetic tools for generating recombinant viruses to study the biology and pathogenesis of herpesviruses. For example, BAC-directed deletion mutants are commonly used to determine the function and essentiality of viral genes. In this paper, we discuss the creation of herpesvirus BACs, functional analyses of herpesvirus mutants, and future applications for studies of herpesviruses. We describe commonly used methods to create and mutate herpesvirus BACs (such as site-directed mutagenesis and transposon mutagenesis). We also evaluate the potential future uses of viral BACs, including vaccine development and gene therapy.

  1. Herpesvirus BACs: Past, Present, and Future

    Charles Warden


    Full Text Available The herpesviridae are a large family of DNA viruses with large and complicated genomes. Genetic manipulation and the generation of recombinant viruses have been extremely difficult. However, herpesvirus bacterial artificial chromosomes (BACs that were developed approximately 10 years ago have become useful and powerful genetic tools for generating recombinant viruses to study the biology and pathogenesis of herpesviruses. For example, BAC-directed deletion mutants are commonly used to determine the function and essentiality of viral genes. In this paper, we discuss the creation of herpesvirus BACs, functional analyses of herpesvirus mutants, and future applications for studies of herpesviruses. We describe commonly used methods to create and mutate herpesvirus BACs (such as site-directed mutagenesis and transposon mutagenesis. We also evaluate the potential future uses of viral BACs, including vaccine development and gene therapy.

  2. Human BAC library: construction and rapid screening.

    Asakawa, S; Abe, I; Kudoh, Y; Kishi, N; Wang, Y; Kubota, R; Kudoh, J; Kawasaki, K; Minoshima, S; Shimizu, N


    We have constructed a human genomic bacterial artificial chromosome (BAC) library using high molecular weight DNA from a pre-pro-B cell line, FLEB14-14, with a normal male diploid karyotype. This BAC library consists of 96,000 clones with an average DNA insert size of 110 kb, covering the human genome approximately 3 times. The library can be screened by three different methods. (1) Probe hybridization to 31 high-density replica (HDR) filters: each filter contains 3072 BAC clones which were gridded in a 6 x 6 pattern. (2) Probe hybridization to two Southern blot filters to which 31 HindIII digests of the pooled 3072 BAC clones were loaded. This identifies a particular HDR filter for which further probe hybridization is performed to identify a particular clone(s). (3) Two-step polymerase chain reaction (PCR). First, PCR is applied to DNA samples prepared from ten superpools of 9600 BAC clones each to identify a particular superpool and the second PCR is applied to 40 unique DNA samples prepared from the four-dimensionally assigned BAC clones of the particular superpool. We present typical examples of the library screening using these three methods. The two-step PCR screening is particularly powerful since it allows us to isolate a desired BAC clone(s) within a day or so. The theoretical consideration of the advantage of this method is presented. Furthermore, we have adapted Vectorette method to our BAC library for the isolation of terminal sequences of the BAC DNA insert to facilitate contig formation by BAC walking.

  3. BacS: an abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA.

    Jahn, Olivia J; Davila, Guillermo; Romero, David; Noel, K Dale


    Rhizobium etli CFN42 bacteroids from bean nodules possessed an abundant 16-kDa protein (BacS) that was found in the membrane pellet after cell disruption. This protein was not detected in bacteria cultured in tryptone-yeast extract. In minimal media, it was produced at low oxygen concentration but not in a mutant whose nifA was disrupted. N-terminal sequencing of the protein led to isolation of a bacS DNA fragment. DNA hybridization and nucleotide sequencing revealed three copies of the bacS gene, all residing on the main symbiotic plasmid of strain CFN42. A stretch of 304 nucleotides, exactly conserved upstream of all three bacS open reading frames, had very close matches with the NifA and sigma 54 consensus binding sequences. The only bacS homology in the genetic sequence databases was to three hypothetical proteins of unknown function, all from rhizobial species. Mutation and genetic complementation indicated that each of the bacS genes gives rise to a BacS polypeptide. Mutants disrupted or deleted in all three genes did not produce the BacS polypeptide but were Nod+ and Fix+ on Phaseolus vulgaris.

  4. A multiway analysis for identifying high integrity bovine BACs

    McEwan John C; Brauning Rudiger; McWilliam Sean; Barris Wesley; Ratnakumar Abhirami; Snelling Warren M; Dalrymple Brian P


    Abstract Background In large genomics projects involving many different types of analyses of bacterial artificial chromosomes (BACs), such as fingerprinting, end sequencing (BES) and full BAC sequencing there are many opportunities for the identities of BACs to become confused. However, by comparing the results from the different analyses, inconsistencies can be identified and a set of high integrity BACs preferred for future research can be defined. Results The location of each bovine BAC in...

  5. Proust et l’esthétique du temps dans À la Recherche du temps perdu

    Lebon, Stéphanie


    Nous essaierons de montrer dans cet article comment chez Proust l’expérience du temps reflète le cheminement et les impressions d’une conscience à la recherche d’une expérience existentielle et comment notre auteur va créer une esthétique littéraire nouvelle (en France) afin d’y parvenir. Nous verrons donc, dans une première partie, que percevoir le monde à travers la conscience humaine, c’est appréhender la vie selon le temps humain et non chronologique, linéaire. C’est pourquoi Proust ne va...

  6. The multifocal electroretinogram (mfERG) in the pig

    Voss Kyhn, Maria; Kiilgaard, Jens Folke; Lopez, Ana Garcia;


    To establish a method allowing multifocal electroretinography (mfERG) recording with simultaneous fundus monitoring on anaesthetized pigs. In addition we characterize the peaks of the porcine mfERG trace, and compare the visual streak area with the optic nerve head, a known non-response area...

  7. The multifocal electroretinogram (mfERG) in the pig

    Voss Kyhn, Maria; Kiilgaard, Jens Folke; Lopez, Ana Garcia


    To establish a method allowing multifocal electroretinography (mfERG) recording with simultaneous fundus monitoring on anaesthetized pigs. In addition we characterize the peaks of the porcine mfERG trace, and compare the visual streak area with the optic nerve head, a known non-response area. Fin...

  8. Integrated treatment of molasses distillery wastewater using microfiltration (MF).

    Basu, Subhankar; Mukherjee, Sangeeta; Kaushik, Ankita; Batra, Vidya S; Balakrishnan, Malini


    To achieve zero-liquid discharge, high pressure reverse osmosis (RO) of effluent is being employed by molasses based alcohol distilleries. Low pressure and thus less energy intensive microfiltration (MF) is well established for particulate separation but is not suitable for removal of dissolved organics and color. This work investigates two schemes incorporating MF for molasses distillery wastewater (a) chemical coagulation followed by treatment in a membrane bioreactor (MBR) using MF and (b) electrocoagulation followed by MF. The performance was assessed in terms of COD and color reduction; the conversion of the generated sludge into a zeolite desiccant was also examined. A comparison of the schemes indicates electrocoagulation followed by MF through a 0.1 μm membrane to be most effective. By hydrothermal treatment, electrocoagulated sludge can be transformed into a porous NaX zeolite with a surface area of 86 m(2)/g, which is comparable to commercial desiccants.

  9. Reassessing the Wage Penalty for Temps in Germany

    Jahn, Elke

    and region. But temps already suffer from a marked wage decline before entering the temporary help sector. Nevertheless, temporary agency employment does not leave a long lasting scar. Three quarters after leaving the sector, temps no longer suffer from a wage penalty. A recent change in the law set a high......As a consequence of the rapid growth of temporary agency employment in Germany, the debate on the poor working conditions of temps, specifically their remuneration, has intensified recently. The paper shows that the wage gap for German temp workers is rather large and varies between occupation...

  10. Association and in silico assignment of sequences from turkey BACs.

    Reed, Kent M; Faile, Gretchen M; Kreuth, Stacy B; Chaves, Lee D; Sullivan, Laura M


    Bacterial artificial chromosomes (BACs) provide an important resource in genetic mapping. An initial set of BACs corresponding to microsatellite markers in the turkey (Meleagris gallopavo) was isolated from the CHORI-260 turkey BAC library. The selected markers were distributed on both macro- and microchromosomes and included a genetically unlinked marker. End sequences were obtained for a subset of the recovered BACs and compared to the chicken whole genome sequence. Close association of the turkey BAC-end sequences and original marker sequences was generally conserved in the chicken genome. Gene content of the turkey BACs is predicted from the comparative sequence alignments.

  11. Are crude oil markets multifractal? Evidence from MF-DFA and MF-SSA perspectives

    He, Ling-Yun; Chen, Shu-Peng


    In this article, we investigated the multifractality and its underlying formation mechanisms in international crude oil markets, namely, Brent and WTI, which are the most important oil pricing benchmarks globally. We attempt to find the answers to the following questions: (1) Are those different markets multifractal? (2) What are the dynamical causes for multifractality in those markets (if any)? To answer these questions, we applied both multifractal detrended fluctuation analysis (MF-DFA) and multifractal singular spectrum analysis (MF-SSA) based on the partition function, two widely used multifractality detecting methods. We found that both markets exhibit multifractal properties by means of these methods. Furthermore, in order to identify the underlying formation mechanisms of multifractal features, we destroyed the underlying nonlinear temporal correlation by shuffling the original time series; thus, we identified that the causes of the multifractality are influenced mainly by a nonlinear temporal correlation mechanism instead of a non-Gaussian distribution. At last, by tracking the evolution of left- and right-half multifractal spectra, we found that the dynamics of the large price fluctuations is significantly different from that of the small ones. Our main contribution is that we not only provided empirical evidence of the existence of multifractality in the markets, but also the sources of multifractality and plausible explanations to current literature; furthermore, we investigated the different dynamical price behaviors influenced by large and small price fluctuations.

  12. A Prediction Model of MF Radiation in Environmental Assessment



    Objective To predict the impact of MF radiation on human health.Methods The vertical distribution of field intensity was estimated by analogism on the basis of measured values from simulation measurement. Results A kind of analogism on the basis of geometric proportion decay pattern is put forward in the essay. It showed that with increasing of height the field intensity increased according to geometric proportion law. Conclusion This geometric proportion prediction model can be used to estimate the impact of MF radiation on inhabited environment, and can act as a reference pattern in predicting the environmental impact level of MF radiation.

  13. Construction of the Bac-to-Bac System of Bombyx mori Nucleopolyhedroviru

    Jin-shan HUANG; Bi-fang HAO; Xiu-lian SUN; Fei DENG; Hua-lin WANG; Zhi-hong HU


    To construct the Bac-to-Bac expression system of Bombyx mori nucleopolyhedrovirus (BmNPV), a transfer vector was constructed which contained an Escherichia coli (E. coli) mini-F replicon and a lacZ: attTN7: lacZ cassette within the upstream and downstream regions of the BmNPV polyhedrin gene. B. mori larvae were cotransfected with wild-type BmNPV genomic DNA and the transfer vector through subcutaneous injection to generate recombinant viruses by homologous recombination in vivo. The genomic DNA of budded viruses extracted from the hemolymph of the transfected larvae was used to transform E. coli DH10B. Recombinant bacmids were screened by kanamycin resistance, PCR and restriction enzyme (REN) digestion. One of the bacmid colonies, BmBacJS13, which had similar REN profiles to that of wild-type BmNPV, was selected for further research. To investigate the infectivity of BmBacJS13, the polyhedrin gene was introduced into the bacmid and the resultant recombinant (BmBacJS13-ph) was transfected to BmN cells. The budded viruses were collected from the supernatant of the transfected cells and used for infecting BmN cells. Growth curve analysis indicated that BmBacJS13-ph had a similar growth curve to that of wild-type BmNPV. Bio-assays indicated that BmBacJS13-ph was also infectious to B. mori larvae.

  14. Reassessing the Wage Penalty for Temps in Germany

    Jahn, Elke

    As a consequence of the rapid growth of temporary agency employment in Germany, the debate on the poor working conditions of temps, specifically their remuneration, has intensified recently. Using administrative data, the paper shows that the wage gap for German temp workers is rather large and v...

  15. Ergonomic assessment of brake and accelerator mechanisms of MF285 and MF399 tractors using electromyography method

    A Nikkhah


    Full Text Available Introduction: Too many people are working in the agricultural sector and therefore, pay more attention to the safety and health at work in the agricultural sector is important. This issue is more important in developing industrial countries where the level of the ergonomic working condition is less than that of developed countries. Attention to ergonomic condition of agricultural machinery drivers is one of the goals of agricultural mechanization. Therefore, in this study the ergonomic conditions of brake and accelerator mechanisms for MF285 and MF399 tractor's drivers were investigated using a new method. Materials and Methods: 25 people were selected for experiment. The electrical activity of Medialis gastrocnemius, Lateralis gastrocnemius, Vastus medialis, Vastus lateralis, Quadratus Lumborum and Trapezius muscles of drivers before and during pressing the pedal and after rest time were recorded using Biovision device. Measurements were performed for each person on each muscle 30 seconds before pressing the pedal, 60 seconds after pressing the pedal and after 60 seconds of rest. For all drivers, the muscles on the right side (brake and accelerator side have been selected and tested. The measurements were performed in compliance with appropriate time intervals between the measurements. Results and Discussion: Ergonomic assessment of brake pedal: The results showed that the RMS electrical activity of muscles of Vastus medialis and Medial gastrocnemius, during 60 seconds braking were 2.47 and 1.97. So, Vastus medialis and Medial gastrocnemius had the highest stress during pressing the MF399 tractor's brake pedal. Moreover, the Medial gastrocnemius and Lateral gastrocnemius with RMS electrical activity ratio of 2.47 and 1.74 had the highest RMS electrical activity ratio respectively, during 60 seconds braking compared to before braking of MF285 tractor. The comparison of results showed that the Vastus medialis and Trapezius had the higher stress

  16. The need for blood alcohol concentration (BAC) legislation in Nigeria

    Dr Patrick O Erah

    and ignorance, coupled with the absence of Blood Alcohol Concentration (BAC) threshold to act as a legal .... self-regulation. An established BAC .... subnormal body temperature; incontinence; impairment of circulation and respiration ...

  17. As Blood Alcohol Content (BAC) Increases, So Does Impairment

    ... on. Feature: Rethinking Drinking As Blood Alcohol Content (BAC) Increases, So Does Impairment Past Issues / Spring 2014 ... For purposes of law enforcement, blood alcohol content (BAC) is used to define intoxication and provides a ...

  18. End Sequencing and Finger Printing of Human & Mouse BAC Libraries

    Fraser, C


    This project provided for continued end sequencing of existing and new BAC libraries constructed to support human sequencing as well as to initiate BAC end sequencing from the mouse BAC libraries constructed to support mouse sequencing. The clones, the sequences, and the fingerprints are now an available resource for the community at large. Research and development of new metaodologies for BAC end sequencing have reduced costs and increase throughput.

  19. Immunotoxin BAC5-CT treated nasopharyngeal carcinoma


    In this study, immunotoxin (IT) was prepared by conjugating BAC5 and CT with SPDP. The effects of IT on NPC and its mechanisms were explored using double labeled with radioactive nuclides, immunography and electron microscope technique in vivo and in vitro. The specific concentration of BAC5 in the tumor area showed. The radioactivity rate of tumor/nontumor (T/NT) was up to 10.26. IT had cytotoxic effects both on the cultured CNE-2 cell line and tumor multicell spheroides. In vivo, the preliminary result indicated that IT also had a inhibitory action on the nude mice models bearing human NPC (Reported in another article). Under electron microscope, the necrosis and apoptosis of tumor cells were found. The membranes of most tumor cells were found intacted not or corrosined, some of them had the character of apoptosis, including reduce of tumor cells membrane villi, condensation of cytoplasm and pyknosis or cleavage of nuclear. There were many of apoptosis bodies, which were occasionally phagocytosed by tumor cells. The infiltration of immunocytoes in tumor tissue could be seen. The results indicated that BAC5 can specifically combine with NPC cells and BAC5-CT has the inhibitory effect on NPC in vitro and in vivo, mechanism of which may be related to the effects that ‘warhead' CT dissolute the membrane of tumor cells directly, or/and IT promote the infiltration of immunocytoes so as to induce the apoptosis of tumor cell.

  20. Le temps mesurable, réversible, insaisissable ?

    Fink, Martin; Leduc , Michèle


    Depuis l'Antiquité, la nature du temps a fasciné nombre de grands penseurs. Cet ouvrage expose ce que la physique est capable de dire aujourd'hui sur le sujet. La mesure du temps, ou plus exactement celle d'une durée, se fait grâce à des horloges atomiques dont l'exactitude peut atteindre une seconde sur plusieurs milliards d'années. Nous décrivons la façon dont s'effectue le transfert du temps qui permet la synchronisation d'horloges en différents points de la Terre ou de l'espace au milliardième de seconde près, ou même mieux. Les relativités, restreinte et générale, ont bouleversé notre conception du temps et ont un impact considérable sur certains problèmes de la vie quotidienne comme l'utilisation du GPS. On abandonne l'idée d'un temps absolu, le temps devient multiple et insaisissable, et peut-être même une illusion. Enfin la flèche du temps, ou l'irréversibilité, implique que les phénomènes physiques se déroulent toujours dans un sens déterminé, en relation avec la croissan...

  1. Modélisation De La Température De Surface Des Bacs Évaporométriques

    Dehon, P.


    A simple method is presented to estimate the surface temperature of evaporatIOn pans. The model requires the measurement of the following climatological variables: the shortwave radiation of the sun, the air temperature, the actual vapour pressure, the relative sunshine and the wind speed. The method is valid for shallow and deep pans (depth between 0.20 m and 2.0 m). The model describes also the daily development of the terms of the energy balance.

  2. Transposon-mediated BAC transgenesis in zebrafish and mice

    Sumiyama Kenta


    Full Text Available Abstract Background Bacterial artificial chromosomes (BACs are among the most widely used tools for studies of gene regulation and function in model vertebrates, yet methods for predictable delivery of BAC transgenes to the genome are currently limited. This is because BAC transgenes are usually microinjected as naked DNA into fertilized eggs and are known to integrate as multi-copy concatamers in the genome. Although conventional methods for BAC transgenesis have been very fruitful, complementary methods for generating single copy BAC integrations would be desirable for many applications. Results We took advantage of the precise cut-and-paste behavior of a natural transposon, Tol2, to develop a new method for BAC transgenesis. In this new method, the minimal sequences of the Tol2 transposon were used to deliver precisely single copies of a ~70 kb BAC transgene to the zebrafish and mouse genomes. We mapped the BAC insertion sites in the genome by standard PCR methods and confirmed transposase-mediated integrations. Conclusion The Tol2 transposon has a surprisingly large cargo capacity that can be harnessed for BAC transgenesis. The precise delivery of single-copy BAC transgenes by Tol2 represents a useful complement to conventional BAC transgenesis, and could aid greatly in the production of transgenic fish and mice for genomics projects, especially those in which single-copy integrations are desired.

  3. Reassessing the Wage Penalty for Temps in Germany

    Jahn, Elke

    As a consequence of the rapid growth of temporary agency employment in Germany, the debate on the poor working conditions of temps, specifically their remuneration, has intensified recently. Using administrative data, the paper shows that the wage gap for German temp workers is rather large...... change in the law set a high incentive for temporary help agencies to pay their workers according to a sectoral collective agreement. Surprisingly, the unionization of the sector could not bring the widening wage gap to a halt....... and varies between occupation and region. But temps already suffer from a marked wage decline before entering the temporary help sector. Nevertheless, temporary agency employment does not leave a long lasting scar. Two years after leaving the sector, temps no longer suffer from a wage penalty. A recent...

  4. Disinfection Tests of MF-2 Disinfectant on Nature Water Resource

    WANG Jinlan; LIU Qingzeng; CUI Ying


    Objective To furnish evidence for practical application by examining the disinfection effect of MF - 2 disinfectant on different degree of contaminated water. Methods According to the determining methods of total bacterial count and coli - index of drinking water stimulated by the state conduct the forthwith disinfection experiments and accumulate disinfection experiments. Results Adding the MF - 2 into water resource to specific concentration according with the water resource sanitation criterion stipulated by the sater, after pointed time, it can chang water quality of severe contaminated water and questionable contaminated water into that of clean water, the quality of less contaminated water into that of drinking water. Conclusions MF - 2 disinfectant is applicable for disinfection of nature contaminated water resource in an outlying district and field - operation especially for urgent drinking water disinfection the area where there is neither clean water nor heating condition.

  5. Comparison of Applied Forces on Selective Joints and Muscles of Drivers During Clutching of MF285 and MF399 Tractors

    H Fallahi


    Full Text Available In this research, the imposed forces on three muscles including: Gastrocnemius muscle, Trapezius muscle and Quadratus lumborum of the tractor drivers during clutching have been studied. The sample included 30 persons and the research was conducted on two domestic tractors including: MF285 and MF399 models. The clutching forces for these tractors were measured as 340 N and 290 N, respectively. The difference between drivers’ knee angle of the two tractors was proved significant at the one percent level. The decrease of pain threshold after 30 seconds and 60 seconds clutching and 60 seconds rest after clutching in MF285 tractor in all three muscles were more than that of MF399 tractor. The impact of clutching on the average decrease of pain threshold, among all the drivers, and for all time intervals, during and after clutching in the Quadratus lumborum muscle for both tractors was more than the other two muscles. In order to reduce the imposed force of clutching for MF285 tractor, some modifications is suggested. In this regard the force transfer joint between the pedal and the disc in the mechanism of clutching can be replaced with one made of cast iron.

  6. RF circuit design techniques for MF-UHF applications

    Eroglu, Abdullah


    Magnetic resonance imaging, semiconductor processing, and RFID are some of the critical applications within the medium frequency (MF) to ultrahigh frequency (UHF) range that require RF designers to have a solid understanding of analytical and experimental RF techniques. Designers need to be able to design components and devices cost effectively, and integrate them with high efficiency, minimal loss, and required power. Computer-aided design (CAD) tools also play an important part in helping to reduce costs and improve accuracy through optimization. RF Circuit Design Techniques for MF-UHF Appli

  7. Les relativités espace, temps, gravitation

    Le Bellac, Michel


    En 1905, la relativité restreinte bouleverse nos conceptions de l'espace et du temps : il n'existe pas de temps universel, et une conséquence spectaculaire est le paradoxe des jumeaux vérifié quotidiennement par le système GPS. Dix années après la relativité restreinte, la relativité générale interprète la gravitation comme une propriété géométrique de l'espace-temps. Il n'existe plus d'espace absolu où l'on pourrait disposer étoiles et galaxies et l'espace-temps est déformé au voisinage d'objets astrophysiques compacts. Dans un environnement de gravité forte, le temps diffère radicalement du temps usuel et la lumière peut faire du surplace ou même se retrouver piégée. Ce livre expose les concepts fondamentaux introduits par Einstein et il les confronte aux expériences les plus récentes en physique des particules élémentaires et en astrophysique. Le lecteur découvrira comment la relativité décrit ces objets étranges et fascinants que sont les étoiles à neutrons, les trous n...

  8. Le facteur temps ne sonne jamais deux fois

    Klein, Etienne


    Chose déroutante, décidément, que le temps. Nous en parlons comme d'une notion familière, évidente, voire domestique, "gérable". Nous parlons même d'un "temps réel" pour évoquer l'instantanéité, c'est-à-dire le temps sur lequel nous n'avons aucune prise. Les physiciens, eux, l'ont couplé à l'espace, en ont fait une variable mathématique, abstraite, qu'ils intègrent dans des théories audacieuses, spectaculaires, si complexes qu'elles sont difficiles à traduire en langage courant. Certains disent même avoir identifié le moteur du temps. Quant aux philosophes, ils ne cessent depuis plus de deux millénaires de soumettre le temps au questionnement : est-il une sorte d'entité primitive, originaire, qui ne dériverait que d'elle-même? Ou procéderait-il au contraire d'une ou plusieurs autres entités, plus fondamentales: la relation de cause à effet, par exemple? Le temps s'écoule-t-il de lui-même ou a-t-il besoin des événements qui s'y déroulent pour passer? S'apparente-t-il au devenir,...

  9. A Novel Type III Endosome Transmembrane Protein, TEMP

    Rohan D. Teasdale


    Full Text Available As part of a high-throughput subcellular localisation project, the protein encoded by the RIKEN mouse cDNA 2610528J11 was expressed and identified to be associated with both endosomes and the plasma membrane. Based on this, we have assigned the name TEMP for Type III Endosome Membrane Protein. TEMP encodes a short protein of 111 amino acids with a single, alpha-helical transmembrane domain. Experimental analysis of its membrane topology demonstrated it is a Type III membrane protein with the amino-terminus in the lumenal, or extracellular region, and the carboxy-terminus in the cytoplasm. In addition to the plasma membrane TEMP was localized to Rab5 positive early endosomes, Rab5/Rab11 positive recycling endosomes but not Rab7 positive late endosomes. Video microscopy in living cells confirmed TEMP's plasma membrane localization and identified the intracellular endosome compartments to be tubulovesicular. Overexpression of TEMP resulted in the early/recycling endosomes clustering at the cell periphery that was dependent on the presence of intact microtubules. The cellular function of TEMP cannot be inferred based on bioinformatics comparison, but its cellular distribution between early/recycling endosomes and the plasma membrane suggests a role in membrane transport.

  10. Two-dimensional screening of the Wageningen chicken BAC library.

    Crooijmans, R P; Vrebalov, J; Dijkhof, R J; van der Poel, J J; Groenen, M A


    We have constructed a Bacterial Artificial Chromosome (BAC) library that provides 5.5-fold redundant coverage of the chicken genome. The library was made by cloning partial HindIII-digested high-molecular-weight (HMW) DNA of a female White Leghorn chicken into the HindIII site of the vector pECBAC1. Several modifications of standard protocols were necessary to clone efficiently large partial HindIII DNA fragments. The library consists of 49,920 clones arranged in 130 384-well plates. An average insert size of 134 kb was estimated from the analysis of 152 randomly selected BAC clones. The average number of NotI restriction sites per clone was 0.77. After individual growth, DNA was isolated of the pooled clones of each 384-well plate, and subsequently DNA of each plate was isolated from the individual row and column pools. Screening of the Wageningen chicken BAC library was performed by two-dimensional PCR with 125 microsatellite markers. For 124 markers at least one BAC clone was obtained. FISH experiments of 108 BAC clones revealed chimerism in less than 1%. The number of different BAC clones per marker present in the BAC library was examined for 35 markers which resulted in a total of 167 different BAC clones. Per marker the number of BAC clones varied from 1 to 11, with an average of 4.77. The chicken BAC library constitutes an invaluable tool for positional cloning and for comparative mapping studies.

  11. Multifocal VEP (mfVEP) reveals abnormal neuronal delays in diabetes


    This pilot study examined the diagnostic role of multifocal visually evoked potentials (mfVEP) in a small number of patients with diabetes. mfVEP, mfERG, and fundus photographs of both eyes of five patients with diabetes, three with nonproliferative diabetic retinopathy (NPDR) and two without NPDR were examined. Thirteen control subjects were also examined. Eighteen zones were constructed from the 60-element mfVEP stimulus array. mfVEP implicit time (IT) and amplitude (SNR) differences were t...

  12. MF-Swift simulation study using benchmark data

    Jansen, S.T.H.; Verhoeff, L.; Cremers, R.; Schmeitz, A.J.C.; Besselink, I.J.M.


    The accuracy of tyre models depends to a large extent on the measurement data used to assess model parameters. The MF-Swift tyre model parameters can be identified or estimated from various combinations of experimental data. The amount and required accuracy of the measurement data can be selected

  13. Committee Report: Metrics & Methods for MF/UF System Optimization

    After a membrane filtration (i.e., microfiltration (MF) and ultrafiltration (UF)) system is designed, installed, and commissioned, it is essential that the plant is well-maintained in order to proactively identify potential design or equipment problems and ensure its proper opera...

  14. Investigation of Retinal Spatial Interaction Using mfERG Stimulation

    Patrick H. W. Chu


    Full Text Available Introduction: Adaptation is one of the key characteristic of our vision which can maximize the visual function. It applies to both spatial and temporal characteristics. The fast flickering stimulation characteristics of the multifocal electroretinogram (mfERG can be applied to analyze retinal interactions between flashes and to investigate retinal temporal processing mechanism. Besides, its localized stimulus pattern can also be used as a tool for investigation of retinal spatial interaction. Methods: The mfERG recordings were obtained from 13 eyes of 9, normal, six-week-old Yorkshire pigs. The control mfERG was measured using the pattern consisting of 103 nonscaled hexagons, where each hexagon will follow a pre-set m-sequence. Nine isolated hexagons from the 103 nonscaled pattern were chosen in the masking mfERG stimulation, where the remaining hexagons were kept at constant luminance. First-order and the second-order kernel responses were analyzed, which represent the outer and inner retinal responses, respectively. Results: The second-order kernel response amplitude from the visual streak region showed a significant enhancement under the masking stimulation. Conclusions: The enhancement found under the masking condition indicates that the retinal signal will be suppressed under surrounding flicker stimulation, and this spatial inhibitory mechanism may originate from the inner retina.

  15. Fungicidal mechanisms of the antimicrobial peptide Bac8c.

    Lee, Wonyoung; Lee, Dong Gun


    Bac8c (RIWVIWRR-NH2) is an analogue peptide derived through complete substitution analysis of the linear bovine host defense peptide variant Bac2A. In the present study, the antifungal mechanism of Bac8c against pathogenic fungi was investigated, with a particular focus on the effects of Bac8c on the cytoplasmic membrane. We used bis-(1,3-dibutylbarbituric acid) trimethine oxonol [DiBAC4(3)] staining and 3,3'-dipropylthiacarbocyanine iodide [DiSC3(5)] assays to show that Bac8c induced disturbances in the membrane potential of Candida albicans. An increase in membrane permeability and suppression of cell wall regeneration were also observed in Bac8c-treated C. albicans. We studied the effects of Bac8c treatment on model membranes to elucidate its antifungal mechanism. Using calcein and FITC-labeled dextran leakage assays from Bac8c-treated large unilamellar vesicles (LUVs) and giant unilamellar vesicles (GUVs), we found that Bac8c has a pore-forming action on fungal membranes, with an estimated pore radius of between 2.3 and 3.3 nm. A membrane-targeted mechanism of action was also supported by the observation of potassium release from the cytosol of Bac8c-treated C. albicans. These results indicate that Bac8c is considered as a potential candidate to develop a novel antimicrobial agent because of its low-cost production characteristics and high antimicrobial activity via its ability to induce membrane perturbations in fungi.

  16. Examining the efficiency and interdependence of US credit and stock markets through MF-DFA and MF-DXA approaches

    Shahzad, Syed Jawad Hussain; Nor, Safwan Mohd; Mensi, Walid; Kumar, Ronald Ravinesh


    This study examines the power law properties of 11 US credit and stock markets at the industry level. We use multifractal detrended fluctuation analysis (MF-DFA) and multifractal detrended cross-correlation analysis (MF-DXA) to first investigate the relative efficiency of credit and stock markets and then evaluate the mutual interdependence between CDS-equity market pairs. The scaling exponents of the MF-DFA approach suggest that CDS markets are relatively more inefficient than their equity counterparts. However, Banks and Financial credit markets are relatively more efficient. Basic Materials (both CDS and equity indices) is the most inefficient sector of the US economy. The cross-correlation exponents obtained through MF-DXA also suggest that the relationship of the CDS and equity sectors within and across markets is multifractal for all pairs. Within the CDS market, Basic Materials is the most dependent sector, whereas equity market sectors can be divided into two distinct groups based on interdependence. The pair-wise dependence between Basic Materials sector CDSs and the equity index is also the highest. The degree of cross-correlation shows that the sectoral pairs of CDS and equity markets belong to a persistent cross-correlated series within selected time intervals.

  17. Modification of bacterial artificial chromosomes (BACs) and preparation of intact BAC DNA for generation of transgenic mice.

    Gong, Shiaoching; Yang, X William


    BAC transgenesis is a powerful tool for the study of gene expression and gene function in the mouse in vivo. In this unit, detailed protocols are provided for modification (i.e., marker gene insertion, deletion, or point mutation) of BACs by homologous recombination in E. coli. This method utilizes a shuttle vector that allows transient expression of the E. coli RecA gene to support homologous recombination in the BAC host bacteria. In addition, two protocols are provided for purification of BAC DNA for microinjection to generate transgenic mice. Since BAC DNA is prone to degradation, which may introduce positional effects in transgenic mice, two methods are given for purification of intact BAC DNA for subsequent microinjection.

  18. Generation of BAC transgenic epithelial organoids.

    Gerald Schwank

    Full Text Available Under previously developed culture conditions, mouse and human intestinal epithelia can be cultured and expanded over long periods. These so-called organoids recapitulate the three-dimensional architecture of the gut epithelium, and consist of all major intestinal cell types. One key advantage of these ex vivo cultures is their accessibility to live imaging. So far the establishment of transgenic fluorescent reporter organoids has required the generation of transgenic mice, a laborious and time-consuming process, which cannot be extended to human cultures. Here we present a transfection protocol that enables the generation of recombinant mouse and human reporter organoids using BAC (bacterial artificial chromosome technology.

  19. Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein.

    Arnold, M F F; Haag, A F; Capewell, S; Boshoff, H I; James, E K; McDonald, R; Mair, I; Mitchell, A M; Kerscher, B; Mitchell, T J; Mergaert, P; Barry, C E; Scocchi, M; Zanda, M; Campopiano, D J; Ferguson, G P


    The Sinorhizobium meliloti BacA ABC transporter protein plays an important role in its nodulating symbiosis with the legume alfalfa (Medicago sativa). The Mycobacterium tuberculosis BacA homolog was found to be important for the maintenance of chronic murine infections, yet its in vivo function is unknown. In the legume plant as well as in the mammalian host, bacteria encounter host antimicrobial peptides (AMPs). We found that the M. tuberculosis BacA protein was able to partially complement the symbiotic defect of an S. meliloti BacA-deficient mutant on alfalfa plants and to protect this mutant in vitro from the antimicrobial activity of a synthetic legume peptide, NCR247, and a recombinant human β-defensin 2 (HBD2). This finding was also confirmed using an M. tuberculosis insertion mutant. Furthermore, M. tuberculosis BacA-mediated protection of the legume symbiont S. meliloti against legume defensins as well as HBD2 is dependent on its attached ATPase domain. In addition, we show that M. tuberculosis BacA mediates peptide uptake of the truncated bovine AMP, Bac7(1-16). This process required a functional ATPase domain. We therefore suggest that M. tuberculosis BacA is important for the transport of peptides across the cytoplasmic membrane and is part of a complete ABC transporter. Hence, BacA-mediated protection against host AMPs might be important for the maintenance of latent infections.

  20. High Expression of Insulin-like Growth Factor H (IGF-Ⅱ) Using Bac-to-Bac Expression System


    Objective In order to obtain mature insulin-like growth factor- Ⅱ ( IGF- Ⅱ ), we used Bac-to-Bac baculovirus expression system. Methods Firstly the IGF- Ⅱ cDNA was cloned into a donor plasmid pFastBac1 and the recombinant pFastBac1 was then introduced into competent cells DH 10Bac. Recombinant bacmids were constructed by transposing a mini-Tn7 element from a donor plasmid pFastBac1 to the mini-attTn7 attachment site on the bacmid where the Tn7 transposition functions were provided in trans by a helper plasmid, and then used to transfect Sf9 insect cells to get recombinant baculovirus. The recombinant baculovirus was used to infect insect cells. Results Agarose gel analysis showed that recombinant donor plasmid pFastBac1 was constructed successfully; Agarose gel analysis of PCR products confirmed recombinant bacmid ; SDS-PAGE and Western Blotting showed that a 7KD protein band appeared. Conclusion The mature IGF- Ⅱ with immunogenecity has been expressed and produced by using Bac-to-Bac expression system.

  1. Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries

    Puigdomènech Pere


    Full Text Available Abstract Background Although melon (Cucumis melo L. is an economically important fruit crop, no genome-wide sequence information is openly available at the current time. We therefore sequenced BAC-ends representing a total of 33,024 clones, half of them from a previously described melon BAC library generated with restriction endonucleases and the remainder from a new random-shear BAC library. Results We generated a total of 47,140 high-quality BAC-end sequences (BES, 91.7% of which were paired-BES. Both libraries were assembled independently and then cross-assembled to obtain a final set of 33,372 non-redundant, high-quality sequences. These were grouped into 6,411 contigs (4.5 Mb and 26,961 non-assembled BES (14.4 Mb, representing ~4.2% of the melon genome. The sequences were used to screen genomic databases, identifying 7,198 simple sequence repeats (corresponding to one microsatellite every 2.6 kb and 2,484 additional repeats of which 95.9% represented transposable elements. The sequences were also used to screen expressed sequence tag (EST databases, revealing 11,372 BES that were homologous to ESTs. This suggests that ~30% of the melon genome consists of coding DNA. We observed regions of microsynteny between melon paired-BES and six other dicotyledonous plant genomes. Conclusion The analysis of nearly 50,000 BES from two complementary genomic libraries covered ~4.2% of the melon genome, providing insight into properties such as microsatellite and transposable element distribution, and the percentage of coding DNA. The observed synteny between melon paired-BES and six other plant genomes showed that useful comparative genomic data can be derived through large scale BAC-end sequencing by anchoring a small proportion of the melon genome to other sequenced genomes.

  2. Sur le(s temps en sciences sociales

    Florence Lacoma Iborra


    Full Text Available À l’initiative du Centre Norbert Elias, la première journée d’étude d’un cycle annuel, centrée sur la question du temps en sciences sociales, s’est tenue dans les locaux de l‘université d’Avignon le 21 octobre 2011.Cette journée délibérément pluridisciplinaire a favorisé la confrontation d’expériences temporelles différentes issues de champs de recherches distincts et forts éloignés (le temps discursif, la temporalité médiatique, le temps patrimonial, mais aussi la mise en regard de représen...

  3. Tempe as Language: An Indonesian Village Revitalisation Mini-project

    Kirsten Bradley


    Full Text Available In Kandangan, a village in the Temmanggung Regency (Kabupaten Temanggung in the Province of Central Java, tempe bunguk used to be a daily food—using locally grown bunguk beans—and made in many households. But imported blocks of tempe from China made with industrially grown soy beans have slowly crept in and replaced it. As part of her food skills mapping (a part of the Spedagi Project, Francisca Callista (Siska went searching for what used to be eaten in her village, and for those who could remember how to make it.

  4. Genetic stability of pestivirus genomes cloned into BACs

    Rasmussen, Thomas Bruun; Reimann, Ilona; Uttenthal, Åse;

    chromosome (BAC) vector “pBeloBAC11”. This BAC vector provides a markedly higher stability of cloned sequences in E. coli compared to plasmids that form the basis for the existing pestivirus cDNA clones. In this study, two of the newly constructed BAC clones were analysed for genetic stability of the cloned...... pestivirus genomes to demonstrate the suitability of the BAC vector for harbouring pestivirus genomes. Two BAC clones, comprising the complete genomes of BDV Gifhorn (pBeloGif3) and CSFV Paderborn (pBeloPader10) were passaged 15 times in E.coli representing at least 360 bacteria generations. From 15th...... passage of the BAC clones, the entire 5’ and 3’ ends of the cloned genomes and parts of the open reading frame were sequenced and compared to the sequences of the parent BAC clones. The sequenced areas represent approximately 20 % of the cloned genome. No mutations were observed after the extensive...

  5. 75 FR 49526 - Freescale Semiconductor, Inc., Technical Information Center, Tempe, AZ; Freescale Semiconductor...


    ... Employment and Training Administration Freescale Semiconductor, Inc., Technical Information Center, Tempe, AZ; Freescale Semiconductor, Inc., Technical Information Center, Woburn, MA; Amended Certification Regarding... Semiconductor, Inc., Technical Information Center, Tempe, Arizona. The notice was published in the...

  6. Tempe, a nutritious and healthy food from Indonesia.

    Astuti, M; Meliala, A; Dalais, F S; Wahlqvist, M L


    Tempe is a fermented soy bean product originally made by Central Javanese people through fermentation with Rhizopus species. Although there is evidence of earlier fermentation of soy, tempe had appeared in the Central Javanese food pattern in the 1700s. Through its extensive use in main meals and snacks, it has led to people in the Jakarta prectinct having the highest known soy intake in the world and accordingly of the isoflavones contained. This provides an unique opportunity to consider the health effects of tempe (and soy), both beneficial and potentially toxic. Apparent health benefits are bowel health, protection against cardiovascular disease, certain cancers (e.g. breast and prostate) and menopausal health (including bone health). The long use of tempe at all stages of life, without recognised adverse effects, suggests it is relatively safe at the levels of intake seen in Central Java. However, further research on soy, both fermented and non-fermented, in Central Java should yield more insight into the mechanisms of action and the safe ranges of intake.

  7. Tempe fermentation, innovation and functionality: update into the third millenium

    Nout, M.J.R.; Kiers, J.L.


    Fermented foods represent on average one-third of total food consumption. Tempe is a major fermented soyabean food and is known for its attractive flavour, texture and superior digestibility. This present review aims at providing an overview of literature data from ca 1990 until present. Although tr

  8. Tempe fermentation, innovation and functionality: update into the third millenium

    Nout, M.J.R.; Kiers, J.L.


    Fermented foods represent on average one-third of total food consumption. Tempe is a major fermented soyabean food and is known for its attractive flavour, texture and superior digestibility. This present review aims at providing an overview of literature data from ca 1990 until present. Although tr

  9. Tissue Engineered Medical Products (TEMPs): A prelude to risk management

    Wassenaar C; Geertsma RE; Kallewaard M; LGM


    In medical practice products containing cultured cells have emerged. These products could be labelled Tissue Engineered Medical Products (TEMPs). A literature review covering the past ten years was carried out to collect information useful for the assessment of risks associated with these products

  10. Zebrafish YAC, BAC, and PAC genomic libraries.

    Amemiya, C T; Zhong, T P; Silverman, G A; Fishman, M C; Zon, L I


    Numerous positional cloning projects directed at isolating genes responsible for the myriads of observed developmental defects in the zebrafish are anticipated in the very near future. In this chapter, we have reviewed the YAC, BAC, and PAC large-insert genomic resources available to the zebrafish community. We have discussed how these resources are screened and used in a positional cloning scheme and have pointed out frequently formidable logistical considerations in the approach. Despite being extremely tedious, positional cloning projects in the zebrafish will be comparatively easier to accomplish than in human and mouse, because of unique biological advantages of the zebrafish system. Moreover, the ease and speed at which genes are identified and cloned should rapidly increase as more mapping reagents and information become available, thereby paving the way for meaningful biological studies.


    Mien KMS Mahmud


    Full Text Available Kadar kolesterol dan trigliserida darah merupakan salah satu indikator yang dapat digunakan untuk mendiagnosa kemungkinan adanya gangguan jantung atherosklerosis. Kadar lipida darah mempunyai korelasi yang tinggi dengan jenis lemak atau minyak yang dikonsumsi setiap hari, karena komposisi asam lemak pada setiap jenis minyak berbeda. Tempe telah lama digemari masyarakat Indonesia dan telah diketahui bermanfaat bagi kesehatan. Penelitian yang dilaporkan melalui makalah ini bertujuan mempelajari peluang kejadian penyakit atherosklerosis pada pada kelinci dengan pola konsumsi minyak makan asal kelapa sawit, minyak kedelai, minyak asal lemak babi atau minyak babi dicampur tempe. Kelinci percobaan dewasa yang sehat dikelompokkan berdasarkan kadar hemoglobin darah antara 8.2-13.6 g/dl menjadi lima kelompok percobaan. Satu kelompok sebagai kontrol diberi ronsum standar terdiri dari pelet, kangkung dan ubi merah secara adlibitum. Empat kelompok lainnya, disamping ransum standar juga diberi 2 ml minyak babi atau minyak kedelai atau minyak kelapa sawit atau minyak babi yang ditambahkan 5 gram tempe bubuk, sehari. Pengamatan dilakukan terhadap kadar kolesterol total,  LDL, HDL dan trigliserido darah. Dilakukan pula pemeriksaan histopatologi pada jaringan pembuluh darah jantung. Hasil penelitian menunjukkan bahwa minyak babi menyebabkan kenaikan kadar kolesterol total, LDL, HDL dan trigliserida didalam darah sebanyak masing-masing berturut-tuut 60%, 89%, 52% dan 42%. Minyak kelapa sawit menaikan kadar kolesterol total 15%, menurunkan kadar LDL 21%, menaikan kadar HDL 24% dan menurunkan kadar trigliserida 14%. Minyak kedelai menurunkan kolesterol total sebanyak 10%, LDL 30%, trigliserida 24% seraya menaikan kadar HDL sebanyak 3%. Penambahan tempe ke dalam minyak babi dapat menurunkan kadar kolesterol total 10%, LDL 44%, trigliserida 28% dan memelihara kadar HDL lebih tinggi dari sebelum perlakuan. Hasil pemeriksaan histopatologi menunjukkan bahwa pemberian

  12. Ionosphere research with a HF/MF cubesat radio instrument

    Kallio, Esa; Aikio, Anita; Alho, Markku; Fontell, Mathias; Harri, Ari-Matti; Kauristie, Kirsti; Kestilä, Antti; Koskimaa, Petri; Mäkelä, Jakke; Mäkelä, Miika; Turunen, Esa; Vanhamäki, Heikki; Verronen, Pekka


    New technology provides new possibilities to study geospace and 3D ionosphere by using spacecraft and computer simulations. A type of nanosatellites, CubeSats, provide a cost effective possibility to provide in-situ measurements in the ionosphere. Moreover, combined CubeSat observations with ground-based observations gives a new view on auroras and associated electromagnetic phenomena. Especially joint and active CubeSat - ground based observation campaigns enable the possibility of studying the 3D structure of the ionosphere. Furthermore using several CubeSats to form satellite constellations enables much higher temporal resolution. At the same time, increasing computation capacity has made it possible to perform simulations where properties of the ionosphere, such as propagation of the electromagnetic waves in the medium frequency, MF (0.3-3 MHz) and high frequency, HF (3-30 MHz), ranges is based on a 3D ionospheric model and on first-principles modelling. Electromagnetic waves at those frequencies are strongly affected by ionospheric electrons and, consequently, those frequencies can be used for studying the plasma. On the other hand, even if the ionosphere originally enables long-range telecommunication at MF and HF frequencies, the frequent occurrence of spatiotemporal variations in the ionosphere disturbs communication channels, especially at high latitudes. Therefore, study of the MF and HF waves in the ionosphere has both a strong science and technology interests. We introduce recently developed simulation models as well as measuring principles and techniques to investigate the arctic ionosphere by a polar orbiting CubeSat whose novel AM radio instrument measures HF and MF waves. The cubesat, which contains also a white light aurora camera, is planned to be launched in late 2017 ( The new models are (1) a 3D ray tracing model and (2) a 3D full kinetic electromagnetic simulation. We also introduce how combining of the

  13. KARAKTERISTIK KIMIA DAN TEKSTUR TEMPE SETELAH DIPROSES DENGAN KARBON DIOKSIDA BERTEKANAN TINGGI (Chemical Charactersitics and Texture of Tempe Processed with High Pressure Carbon Dioxides

    Maria Erna Kusyawati


    kimia dan tekstur tempe setelah diproses dengan karbon dioksida bertekanan tinggi. Percobaan menggunakan rancangan acak kelompok yang disusun faktorial dengan dua faktor perlakuan dan tiga kali pengulangan. Tempe yang diperlakukan dengan tekanan 7,6 MPa selanjutnya disebut tempe PS sedangkan yang diperlakukan dengan tekanan 6,3 MPa disebut tempe PC. Faktor pertama adalah tekanan dengan dua level perlakuan meliputi 7,6 MPa dan 6,3 MPa, sedangkan faktor ke dua adalah lama waktu tekanan dengan 4 level yaitu 5, 10, 15, 20 menit. Parameter yang diamati meliputi tekstur, kadar air, protein, lemak, abu dan karbohidrat, mineral kalsium, dan vitamin B1, B2, B pada tempe kontrol dan tempe perlakuan. Hasil penelitian menunjukkan bahwa tekanan, lama waktu tekanan dan interaksinya berpengaruh nyata terhadap kadar air, protein, lemak dan abu, tetapi tidak berpengaruh terhadap tekstur. Karbon dioksida tekanan tinggi baik pada 7,6 MPa maupun 6,3 MPa menurunkan kadar air dan lemak, tetapi kadar air tempe PC lebih tinggi dibanding tempe PS. CO2 3 tekanan 7,6 MPa yang menurunkan kadar protein. Perlakuan tekanan tinggi (7,6 MPa dan 6,3 MPa juga menurunkan mineral kalsium tetapi tidak mempengaruhi kandungan vit B.   Kata kunci: Karakteristik kimia, CO2, tekanan tinggi, tempe

  14. Analysis and Evaluation of Manoeuvrability Characteristics of Polish Ferries m/f „Polonia” and m/f „Gryf”

    Marek Szymonski


    Full Text Available The paper describes some specific manner of M/F “Polonia” manoeuvring at the Ystad harbour where she is regarded to be “over maximal ship” and also M/F “Gryf” manoeuvring at Trelleborg, taking part into consideration the effect of wind pressure into the ship’s superstructures and houses.

  15. Characterization of BcMF23a and BcMF23b, two putative pectin methylesterase genes related to pollen development in Brassica campestris ssp. chinensis.

    Lin, Sue; Huang, Li; Yu, Xiaolin; Xiong, Xingpeng; Yue, Xiaoyan; Liu, Tingting; Liang, Ying; Lv, Meiling; Cao, Jiashu


    Two homologous genes, Brassica campestris Male Fertility 23a (BcMF23a) and Brassica campestris Male Fertility 23b (BcMF23b), encoding putative pectin methylesterases (PMEs) were isolated from Brassica campestris ssp. chinensis (syn. Brassica rapa ssp. chinensis). These two genes sharing high sequence identity with each other were highly expressed in the fertile flower buds but silenced in the sterile ones of genic male sterile line system ('Bcajh97-01A/B'). Results of RT-PCR and in situ hybridization suggested that BcMF23a and BcMF23b were pollen-expressed genes, whose transcripts were first detected at the binucleate pollen and maintained throughout to the mature pollen grains. Western blot indicated that both of the putative BcMF23a and BcMF23b proteins are approximately 40 kDa, which exhibited extracellular localization revealed by transient expression analysis in the onion epidermal cells. The promoter of BcMF23a was active specifically in pollen during the late pollen developmental stages, while, in addition to the pollen, BcMF23b promoter drove an extra gene expression in the valve margins, abscission layer at the base of the first true leaves, taproot and lateral roots in seedlings.

  16. KOMPOSISI ZAT GIZI TEMPE YANG DIFORTIFIKASI ZAT BESI DAN VITAMIN A PADA TEMPE MENTAH DAN MATANG (Nutritional Composition of Soyben Tempeh Fortified with Iron and Vitamin A on Uncook and Cook Soyben Tempeh

    Rahayu Astuti


    pada tempe mentah maupun masak. Pada tempe mentah, meningkatnya kadar zat besi perlakuan meningkatkan kadar zat besi tempe fortifikasi meskipun tidak signifikan. Kadar protein dan lemak menurun secara bermakna setelah diolah (dibacem (p0,05. Kata kunci: Tempe terfortifikasi, zat besi, vitamin A, komposisi zat gizi

  17. BACs as tools for the study of genomic imprinting.

    Tunster, S J; Van De Pette, M; John, R M


    Genomic imprinting in mammals results in the expression of genes from only one parental allele. Imprinting occurs as a consequence of epigenetic marks set down either in the father's or the mother's germ line and affects a very specific category of mammalian gene. A greater understanding of this distinctive phenomenon can be gained from studies using large genomic clones, called bacterial artificial chromosomes (BACs). Here, we review the important applications of BACs to imprinting research, covering physical mapping studies and the use of BACs as transgenes in mice to study gene expression patterns, to identify imprinting centres, and to isolate the consequences of altered gene dosage. We also highlight the significant and unique advantages that rapid BAC engineering brings to genomic imprinting research.

  18. BACs as Tools for the Study of Genomic Imprinting

    S. J. Tunster


    Full Text Available Genomic imprinting in mammals results in the expression of genes from only one parental allele. Imprinting occurs as a consequence of epigenetic marks set down either in the father's or the mother's germ line and affects a very specific category of mammalian gene. A greater understanding of this distinctive phenomenon can be gained from studies using large genomic clones, called bacterial artificial chromosomes (BACs. Here, we review the important applications of BACs to imprinting research, covering physical mapping studies and the use of BACs as transgenes in mice to study gene expression patterns, to identify imprinting centres, and to isolate the consequences of altered gene dosage. We also highlight the significant and unique advantages that rapid BAC engineering brings to genomic imprinting research.

  19. Construction of BAC Libraries from Flow-Sorted Chromosomes.

    Šafář, Jan; Šimková, Hana; Doležel, Jaroslav


    Cloned DNA libraries in bacterial artificial chromosome (BAC) are the most widely used form of large-insert DNA libraries. BAC libraries are typically represented by ordered clones derived from genomic DNA of a particular organism. In the case of large eukaryotic genomes, whole-genome libraries consist of a hundred thousand to a million clones, which make their handling and screening a daunting task. The labor and cost of working with whole-genome libraries can be greatly reduced by constructing a library derived from a smaller part of the genome. Here we describe construction of BAC libraries from mitotic chromosomes purified by flow cytometric sorting. Chromosome-specific BAC libraries facilitate positional gene cloning, physical mapping, and sequencing in complex plant genomes.

  20. Construction of BAC libraries from flow-sorted chromosomes

    Šafář, J.; Šimková, H; Doležel, J


    Cloned DNA libraries in bacterial artificial chromosome (BAC) are the most widely used form of large-insert DNA libraries. BAC libraries are typically represented by ordered clones derived from genomic DNA of a particular organism. In the case of large eukaryotic genomes, whole-genome libraries consist of a hundred thousand to a million clones, which make their handling and screening a daunting task. The labor and cost of working with whole-genome libraries can be greatly reduced by construct...

  1. On the Factorizations of (mg,mf)-graph%关于(mg,mf)图的因子分解

    LI Jian-xiang


    Let G be an (mg, mf)-graph, where g and f are integer-valued functionsdefined on V(G) and such that 0 ≤ g(x) ≤ f(x) for each x ∈ V(G). It is proved that(1) If Z ≠ (), both g and f may be not even, G has a (g, f)-factorization, whereZ = {x ∈ V(G): mf(x) - dG(x) ≤ t(x) or dG(x) - mg(x) ≤ t(x), t(x) =f(x) - g(x) ≥ 0}.(2)Let G be an m-regular graph with 2n vertices, m ≥ n. If (P1, P2,…, Pr) is a partition of m, P1 ≡ m (mod 2), Pi ≡ 0 (mod 2), i = 2,…, r, then the edge set E(G) of G can be parted into r parts E1, E2,…, Er of E(G) such that G[Ei] is a Pi-factor of G.

  2. Transposon-mediated BAC transgenesis in human ES cells.

    Rostovskaya, Maria; Fu, Jun; Obst, Mandy; Baer, Isabell; Weidlich, Stefanie; Wang, Hailong; Smith, Andrew J H; Anastassiadis, Konstantinos; Stewart, A Francis


    Transgenesis is a cornerstone of molecular biology. The ability to integrate a specifically engineered piece of DNA into the genome of a living system is fundamental to our efforts to understand life and exploit its implications for medicine, nanotechnology and bioprospecting. However, transgenesis has been hampered by position effects and multi-copy integration problems, which are mainly due to the use of small, plasmid-based transgenes. Large transgenes based on native genomic regions cloned into bacterial artificial chromosomes (BACs) circumvent these problems but are prone to fragmentation. Herein, we report that contrary to widely held notions, large BAC-sized constructs do not prohibit transposition. We also report the first reliable method for BAC transgenesis in human embryonic stem cells (hESCs). The PiggyBac or Sleeping Beauty transposon inverted repeats were integrated into BAC vectors by recombineering, followed by co-lipofection with the corresponding transposase in hESCs to generate robust fluorescent protein reporter lines for OCT4, NANOG, GATA4 and PAX6. BAC transposition delivers several advantages, including increased frequencies of single-copy, full-length integration, which will be useful in all transgenic systems but especially in difficult venues like hESCs.


    Hermana Hermana


    Full Text Available Pembuatan laru tempe dan pengamatan kekuatannja selama penjimpanan. (Preparation of tempeh mold inoculum and observation on its activity during storage. "Laru" or tempeh mold inoculum can be made by growing tempeh mold on rice or "tiwul" (steamed cassava flour. Mold grown rice or "tiwul" is dried in the sun when the spores are fully mature. It is then ground to powder. The spores may also be taken from the dried rice or "tiwul" by rubbing them off with wheat flour. Rice flour or tapioca may be used as substitutes of wheat flour. The flours are also used to dilute the concentration of the spores in inoculum. Another type of tempeh mold in­oculum can be made by grinding dried tempeh into powder. "Laru" made by growing tempeh mold on rice is the best of the three, is easy to be prepared and is inexpensive. The self-life is at least six months when stored in a closed container at room temperature (25°C Walaupun laru murni tentu sangat baik, cara pembuatan laru murni seperti dikerjakan oleh Yap dan Stanton terlalu sulit dan mahal untuk dilaksanakan oleh pedagang tempe di Indonesia pada masa ini. Pada penelitian ini dicari cara pembuatan laru tempe yang mudal dilakukan dan murah, larunya dapat ditakar dan dapat disimpan lebih lama.

  4. Dynamic coating of mf/uf membranes for fouling mitigation

    Tabatabai, S. Assiyeh Alizadeh


    A membrane system including an anti-fouling layer and a method of applying an anti-fouling layer to a membrane surface are provided. In an embodiment, the surface is a microfiltration (MF) or an ultrafiltration (UF) membrane surface. The anti-fouling layer can include a stimuli responsive layer and a dynamic protective layer applied over the stimuli responsive layer that can be a coating on a surface of the membrane. The stimuli responsive polymer layer can act as an adhesive prior to coating with the dynamic protective layer to aid in adhering the dynamic protective layer to the membrane surface. The dynamic protective layer can be formed by suitable nanoparticles that can prevent adhesion of foulants directly to the membrane surface. The stimuli responsive layer can be responsive to physio- chemical stimuli to cause a release of the stimuli responsive layer and the dynamic protective layer including foulants from the membrane.

  5. [Participation of the antibiotics of Bac. pumilus and Bac. subtilis in the regulation of bacterial spore formation].

    Lukin, A A; Korolev, V I


    Sporulation and antibiotic production, as well as the effect of exogenic antibacterial substances on bacterial sporogenesis were studied in various strains of Bac. pumilus and Bac. pumilus and Bac. subtilis. The bacteria were grown on a solid sporulation medium with and without the antibiotics. After 5-day incubation the presence of refractyl spores was determined with a phase-contrast method. It was found that in the strains of Bac. pumilus producing antibacterial substances the sporulation was normal. The loss of the capacity for synthesizing such substances resulted in asporegenicity or oligosporogenicity. This allowed a conclusion on existence of phenomenological connection between sporulation and antibiotic production. The study of the antibiotic effect on bacterial sporogenesis showed negative results which are discussed in the paper along two directions: (1) the antibiotics did not probably participate in regulation of the bacteria cell differentiation, (2) the antibiotics regulated the bacterial sporogenesis though their effect was not as yet detected because of methodical difficulties. Therefore, the problem of the antibiotic participation in regulation of sporulation in Bac. pumilus and Bac. subtilis remains open.

  6. A BAC end view of the Musa acuminata genome

    Town Christopher D


    Full Text Available Abstract Background Musa species contain the fourth most important crop in developing countries. Here, we report the analysis of 6,252 BAC end-sequences, in order to view the sequence composition of the Musa acuminata genome in a cost effective and efficient manner. Results BAC end sequencing generated 6,252 reads representing 4,420,944 bp, including 2,979 clone pairs with an average read length after cleaning and filtering of 707 bp. All sequences have been submitted to GenBank, with the accession numbers DX451975 – DX458350. The BAC end-sequences, were searched against several databases and significant homology was found to mitochondria and chloroplast (2.6%, transposons and repetitive sequences (36% and proteins (11%. Functional interpretation of the protein matches was carried out by Gene Ontology assignments from matches to Arabidopsis and was shown to cover a broad range of categories. From protein matching regions of Musa BAC end-sequences, it was determined that the GC content of coding regions was 47%. Where protein matches encompassed a start codon, GC content as a function of position (5' to 3' across 129 bp sliding windows generates a "rice-like" gradient. A total of 352 potential SSR markers were discovered. The most abundant simple sequence repeats in four size categories were AT-rich. After filtering mitochondria and chloroplast matches, thousands of BAC end-sequences had a significant BLASTN match to the Oryza sativa and Arabidopsis genome sequence. Of these, a small number of BAC end-sequence pairs were shown to map to neighboring regions of the Oryza sativa genome representing regions of potential microsynteny. Conclusion Database searches with the BAC end-sequences and ab initio analysis identified those reads likely to contain transposons, repeat sequences, proteins and simple sequence repeats. Approximately 600 BAC end-sequences contained protein sequences that were not found in the existing available Musa expressed

  7. High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome 6

    Szinay, D.; Chang, S.B.; Khrustaleva, L.I.; Peters, S.A.; Schijlen, E.G.W.M.; Bai, Y.; Stiekema, W.; Ham, van R.C.H.J.; Jong, de H.; Klein Lankhorst, R.M.


    Within the framework of the International Solanaceae Genome Project, the genome of tomato (Solanum lycopersicum) is currently being sequenced. We follow a 'BAC-by-BAC' approach that aims to deliver high-quality sequences of the euchromatin part of the tomato genome. BACs are selected from various li

  8. L’italiano alla prova del Bac

    Giulia Massignan


    Full Text Available Il lavoro propone alcune attività didattiche di preparazione dell’esame orale di italiano previsto dal Baccalauréat del liceo francese. Tale prova d’esame è stata recentemente oggetto di una riforma ministeriale volta a dare maggior peso alla pratica orale. Dopo uno studio delle nuove modalità della prove d’esame e dei suoi contenuti, ci si concentrerà sull’analisi delle abilità orali necessarie al suo superamento e sugli elementi linguistici e comunicativi su cui porre l’attenzione. Sulla base di queste premesse teoriche e metodologiche, si presentano alcuni interventi didattici di preparazione all’esame: due attività per la prova di comprensione orale e due per la prova di produzione e interazione orale; in entrambi i casi, si insiste sull’importanza di proporre strategie d’ascolto e di parlato insegnabili, che diventino consuetudini attive e parte integrante del bagaglio comunicativo del discente. The italian exam in the FrenchBacThe paper proposes some educational activities to prepare for the oral Italian examination as part of the French Baccalauréat. This exam has recently been the subject of a ministerial reform aimed at giving more weight to the oral practice. After illustrating new examination methods and content, we will focus on the analysis of oral skills necessary for passing the exam and aspects of language and communication on which to focus. Based on these theoretical and methodological premises, some educational exam preparation activities will be presented. Two activities test listening comprehension and two focus on production and oral interaction. The stress is on the importance of proposing teach able listening and speaking strategies, so that they become active habits and integral parts of the communicative learner’s baggage.

  9. Expression of an Antisense BcMF3 Affects Microsporogenesis and Pollen Tube Growth in Arabidopsis

    LIU Le-cheng; CAO Jia-shu; YU Xiao-lin; XIANG Xun; FEI Yong-jun


    In an effort to provide some information relevant to the molecular mechanism of genic male sterility in plants, BcMF3 gene that encodes a pectin methylesterase was isolated from the fertile B line of Chinese cabbage-pak-choi (Brassica rapa ssp.chinensis, syn. B. campestris ssp. chinensis). In the present paper, a 455-bp antisense cDNA fragment of BcMF3 was introduced to binary vector pBI121, and then was mobilized into Agrobacterium tumefaciens strain LBA4404. The A.tumefaciens harboring the BcMF3 antisense fragment was transformed to Arabidopsis thaliana by floral dip. Scanning electronic microscopy examination demonstrated that 47.8% of BcMF3 antisense pollen grains exhibited abnormal shape,which might lead to decreased germination of pollens, suggesting that the product of BcMF3 gene plays an important role during microsporogenesis. The evidence on burst of 45.7% of BcMF3 antisense pollen tubes in vitro and a majority of BcMF3 antisense pollens restricted within the stigmatic tissue revealed that BcMF3 is involved in aiding the growth of pollen tubes. The results suggest that BcMF3 acts at both stages of microsporogensis and pollen tube growth.

  10. Du temps de travail au temps des marchés From working time to the time of the marketplace

    Jens Thoemmes


    Full Text Available Nous avons emprunté à Le Goff, à la suite d’un retour au Moyen Âge, la métaphore de l’irruption du temps des marchands dans un monde prédominé par les activités agricoles. Nous avons retenu deux qualités de ce temps des marchands. La première concerne le rôle fondamental qu’ont joué les marchands pour contribuer à l’instauration d’une mesure précise du temps de travail. La seconde qualité du temps des marchands porte sur la maîtrise des risques et notamment sur le contrôle de la variabilité des prix. Nous retrouvons aujourd’hui ces caractéristiques à l’occasion d’un profond remaniement des temporalités : on passe du temps de travail au temps des marchés. Consécutivement aux lois Auroux de 1982, la variabilité devient un dispositif de la négociation collective servant à la mise en marché du temps de travail. Nous avons analysé comment en 20 ans de négociation collective, le travail du législateur et des négociateurs a amené un nouveau schème de la négociation collective. Ces échanges portent sur l’introduction d’une « norme variable » de la durée de travail qui s’est généralisée et sur la situation du «marché du travail » au niveau local et au niveau sociétal. Ces deux évolutions sont liées aux mouvements des marchés, des produits et de l’emploi, que les acteurs de la négociation cherchent à contrôler en mettant en œuvre des logiques prévisionnelles et provisionnelles.Following in Le Goff’s footsteps, inspired by the Middle Ages, we use the metaphor of the eruption of merchants’ time in a world dominated by agricultural activities. We retain two qualities of this sort of time. The first relates to the fundamental role which merchants played in the introduction of a precise measurement of working time. The second quality of merchants’ time relates to risk control and especially to controlling price variability. We find these features today in France: temporalities


    Rahmi Yuniarti


    Full Text Available Malang is one of the industrial centers of tempe chips. To maintain the quality and food safety, analysis is required to identify the hazards during the production process. This study was conducted to identify the hazards during the production process of tempe chips and provide recommendations for developing a HACCP system. The phases of production process of tempe chips are started from slice the tempe, move it to the kitchen, coat it with flour dough, fry it in the pan, drain it, package it, and then storage it. There are 3 types of potential hazards in terms of biological, physical, and chemical during the production process. With the CCP identification, there are three processes that have Critical Control Point. There are the process of slicing tempe, immersion of tempe into the flour mixture and draining. Recommendations for the development of HACCP systems include recommendations related to employee hygiene, supporting equipment, 5-S analysis, and the production layout.

  12. Aktivitas antidislipidemia Tepung tempe dan susu kedelai pada profil lipid tikus diabetes yang diinduksi streptozotocin

    Kartika Nugraheni


    Full Text Available ABSTRACTBackground : dyslipidemia increases risk of cardiovascular disease on diabetes patients. Soybean contain many bioactive compounds which can help control lipid profile.Objectives : analyze the difference between fermented soybean (tempe flour and unfermented soybean (soymilk on lipid profile in diabetic rats.Methods : thirty male sprague dawley rats divided into 3 groups (1 diabetic control (2 tempe flour 1,8 gr (3 soymilk 1,35 gr. Tempe flour and soymilk were given for 28 days. Profile lipid measured including total cholesterol, triglycerides, LDL cholesterol and HDL cholesterol. The data then were analyzed using Anova with confidence level of 95%.Results : the decrease values of total cholesteril, triglycerides and LDL cholesterol were better in tempe flour group (p<0,05. In addition, tempe flour group also showed better increase in the value of HDL cholesterl (p<0,05Conclusion :fermented soybean (tempe flour showed better antidyslipidemic activity than unfermented ones 


    Dian Sundari


    Full Text Available Background: Jelly or jam is preserved foods, typically made from fruit by adding sugar or concentrated dektrosa with total dissolved solids content of at least 65%. Factors to consider in making butter, among others, temperature and sugar content of pectin and citric acid. Some aspects include the type of pectin, acid type and quality of fruit used and the cooking and filling procedures can also impact on the quality of butter, good physical stability and microorganisms. Methods: The addition of tempe in a jam aims to improve the nutritional value of vegetable protein. The study covers the development of formulations of jam, jelly organoleptic test to determine who was elected and also chemical analysis such as protein content, ash content and total sugar content as well as microbiological testing TPC to save power jam. Results: The results showed that the organoleptic test of banana jam and tempe is jam treatment A with the addition of citric acid: pectin = 0.5%: 1%. Results of chemical analysis of the average protein content of 6.1%, an average ash content of 1.80% and average total sugar content 35.57%. During the storage up to week-3, the jam has an average water content of 25.31%- 26.25%; pH range from 5 to 6.15; aw values ranged from 0.75 to 0.83 and the average TPC 1.6 x 102 to 2.2 x 103. From the microbiological test, jam-elect still worth consumed up to week-1 because his total number of microbes that is 4.7 x 102 is still below the maximum limit TPC jam by SNI (5 x 102 colonies / gram.   Keywords: formulation, nutrition, quality, jam, bananas, tempe

  14. Completely Distinguishing Individual A-genome Chromosomes and Their Karyotyping Analysis by Multiple BAC-FISH

    WANG Kai; GUO Wang-zhen; ZHANG Tian-zhen


    @@ Multiple BAC-FISH is a powerful tool for modern cytogenetic researching in both animals and plants.But in cotton,this technique is unavailable due to the high percentage of repetitive sequences.Here,we identified twenty BACs from more than fifty BACs,and successfully demonstrated the use of multiple BAC-FISH for cytogenetie research in a diploid cotton species,G.arboreum.The karyotyping should be a basic application of this technique,but the potential usage such as high-resolution physical mapping construction,assisting BAC-by-BAC sequencing will be invaluable.

  15. PENGARUH KONSUMSI TEMPE KEDELAI GROBOGAN TERHADAP PROFIL SERUM, HEMATOLOGI DAN ANTIOKSIDAN TIKUS [Effect of Grobogan Soybean Tempe Consumption on Rats’ Serum Profiles, Hematology, and Antioxidant

    Made Astawan


    Full Text Available Tempe is a potential source of protein for 250 million people in Indonesia. Indonesian soybean demand reached 2.2 million tons per year, and 1.3 million tons of which are used for tempe production. Approximately 70% of the soybeans are imported from different countries. To improve national food security, it is important to use local soybean as a raw material. Therefore, this study used Grobogan local soybean as raw material. The purpose of this study was to evaluate the impact of the consumption of tempe (from local soybean Grobogan in the long term, ie over a 90-day subchronic test using rats as a model. Parameters measured were serum biochemical profile, hematology, malonaldehyde (MDA, and superoxide dismutase (SOD in liver and kidney organs of rats. This research was conducted using three groups of rats which were fed tempe, boiled soybean, and casein as a source of protein in the ration. Data feed convertion efficiency showed that tempe of Grobogan soybean had a better protein quality than that of boiled soybean and casein. As compared to the groups of rats fed with boiled soybean and casein, the group fed with tempe had a higher HDL cholesterol, however no significant difference was observed in the hematological parameters, MDA and SOD in liver and kidney organs. This suggests consumption of tempe made from Grobogan soybean in the long term does not have a negative impact on health.

  16. High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome 6.

    Szinay, Dóra; Chang, Song-Bin; Khrustaleva, Ludmila; Peters, Sander; Schijlen, Elio; Bai, Yuling; Stiekema, Willem J; van Ham, Roeland C H J; de Jong, Hans; Klein Lankhorst, René M


    Within the framework of the International Solanaceae Genome Project, the genome of tomato (Solanum lycopersicum) is currently being sequenced. We follow a 'BAC-by-BAC' approach that aims to deliver high-quality sequences of the euchromatin part of the tomato genome. BACs are selected from various libraries of the tomato genome on the basis of markers from the F2.2000 linkage map. Prior to sequencing, we validated the precise physical location of the selected BACs on the chromosomes by five-colour high-resolution fluorescent in situ hybridization (FISH) mapping. This paper describes the strategies and results of cytogenetic mapping for chromosome 6 using 75 seed BACs for FISH on pachytene complements. The cytogenetic map obtained showed discrepancies between the actual chromosomal positions of these BACs and their markers on the linkage group. These discrepancies were most notable in the pericentromere heterochromatin, thus confirming previously described suppression of cross-over recombination in that region. In a so called pooled-BAC FISH, we hybridized all seed BACs simultaneously and found a few large gaps in the euchromatin parts of the long arm that are still devoid of seed BACs and are too large for coverage by expanding BAC contigs. Combining FISH with pooled BACs and newly recruited seed BACs will thus aid in efficient targeting of novel seed BACs into these areas. Finally, we established the occurrence of repetitive DNA in heterochromatin/euchromatin borders by combining BAC FISH with hybridization of a labelled repetitive DNA fraction (Cot-100). This strategy provides an excellent means to establish the borders between euchromatin and heterochromatin in this chromosome.


    Fifi Retiaty


    Full Text Available ABSTRACT The level of vitamin B1 in tempe could be increased by modifying the surface of substrate during soybean fermentation. This research aimed to know the influence of substrate thickness during soybean fermentation into tempe to the levels of vitamin B1. The design of this research was completed randomized design with two replication. Vitamin B1 content was analyzed on raw soybeans, boiled soybeans, and tempe using spectrophotometer methods. The substrate thicknesses examined were 0.25 cm, 0.50 cm and 1.00cm. Vitamin B1 level on raw soybean was 0.7436 mg percent and on boiled soybean was 0.4898 mg percent, while in tempe with substrate thickness  0.25 cm, 0.50 cm and 1.00 cm, the vitamin B1 contents were 1.1413, 0.9044, and 0.7130 mg percent respectively. The thickness of tempe substrate affected on vitamin B1 content. A thinner substrate resulted on higher vitamin B1 level. Keywords: fermentation, tempe, vitamin B1   ABSTRAK Kadar vitamin B1 pada tempe dapat ditingkatkan dengan memodifikasi permukaan dari substrat dalam fermentasi kedelai. Tujuan penelitian ini adalah untuk mengetahui pengaruh ketebalan substrat pada fermentasi kedelai menjadi tempe terhadap kadar vitamin B1. Disain penelitian ini adalah Rancangan Acak Lengkap dengan dua kali ulangan. Kadar vitamin B1 dianalisis pada kedelai mentah, kedelai rebus, dan tempe dengan menggunakan metode spektrofotometri. Ketebalan substrat yang diteliti adalah 0.25 cm, 0,50 cm, 1,00 cm. Kadar vitamin B1 pada  kedelai mentah adalah 0,7436 mg persen dan pada kedelai rebus adalah 0.4898 mg persen. Sedangkan kadar vitamin B1 pada tempe dengan ketebalan 0,25, 0,5 dan 1 cm secara berturut-turut adalah 1,1413 mg persen , 0,9044 mg persen dan 0,7130 mg persen. Ketebalan substar tempe berpengaruh pada kandungan vitamin B1. Semakin tipis substrat, akan menghasilkan vitamin B1 yang semakin tinggi. [Penel Gizi Makan 2012, 35(2: 182-188]   Kata Kunci: fermentasi, tempe, vitamin B1

  18. Structure and parameterization of MF-swift, a magic formula-based rigid ring tire model

    Schmeitz, A.J.C.; Versteden, W.D.


    Vehicle dynamic simulations require accurate, fast, reliable, and easy-to- parameterize tire models. For this purpose, TNO developed MF-Swift in close cooperation with the technical universities of Delft and Eindhoven. MF-Swift is based on the well-known magic formula model of Pacejka but extending

  19. ELF-MF exposure affects the robustness of epigenetic programming during granulopoiesis

    Manser, Melissa; Sater, Mohamad R. Abdul; Schmid, Christoph D.; Noreen, Faiza; Murbach, Manuel; Kuster, Niels; Schuermann, David; Schär, Primo


    Extremely-low-frequency magnetic fields (ELF-MF) have been classified as “possibly carcinogenic” to humans on the grounds of an epidemiological association of ELF-MF exposure with an increased risk of childhood leukaemia. Yet, underlying mechanisms have remained obscure. Genome instability seems an unlikely reason as the energy transmitted by ELF-MF is too low to damage DNA and induce cancer-promoting mutations. ELF-MF, however, may perturb the epigenetic code of genomes, which is well-known to be sensitive to environmental conditions and generally deranged in cancers, including leukaemia. We examined the potential of ELF-MF to influence key epigenetic modifications in leukaemic Jurkat cells and in human CD34+ haematopoietic stem cells undergoing in vitro differentiation into the neutrophilic lineage. During granulopoiesis, sensitive genome-wide profiling of multiple replicate experiments did not reveal any statistically significant, ELF-MF-dependent alterations in the patterns of active (H3K4me2) and repressive (H3K27me3) histone marks nor in DNA methylation. However, ELF-MF exposure showed consistent effects on the reproducibility of these histone and DNA modification profiles (replicate variability), which appear to be of a stochastic nature but show preferences for the genomic context. The data indicate that ELF-MF exposure stabilizes active chromatin, particularly during the transition from a repressive to an active state during cell differentiation.

  20. Soya bean tempe extracts show antibacterial activity against Bacillus cereus cells and spores

    Roubos-van den Hil, P.J.; Dalmas, E.; Nout, M.J.R.; Abee, T.


    Aims: Tempe, a Rhizopus ssp.-fermented soya bean food product, was investigated for bacteriostatic and/or bactericidal effects against cells and spores of the food-borne pathogen Bacillus cereus. Methods and results: Tempe extract showed a high antibacterial activity against B. cereus ATCC 14579 bas

  1. 76 FR 44055 - BAC Home Loans Servicing, LP, et al.; Notice of Application and Temporary Order


    ... COMMISSION BAC Home Loans Servicing, LP, et al.; Notice of Application and Temporary Order July 18, 2011... Act, with respect to an injunction entered against BAC Home Loans Servicing, LP (``HLS'') on May 31... (``BAC''). HLS is an entity that services mortgage loans and provides mortgage services,...


    S. V. Dutova


    Full Text Available The article presents the results of immunocorrecting properties of dry extract fractions of C. geoides (Rosaceae for experimental immunodeficiency. Since the BAC fractions action relinquishes to the action of integral extract, the isolation of active substances is not reasonable

  3. Evaluasi Keamanan Tempe dari Kedelai Transgenik Melalui Uji Subkronis pada Tikus (SAFETY EVALUATION OF TEMPE MADE FROM TRANSGENIC SOYBEAN USING SUBCHRONIC TEST ON RATS

    Maryani Suwarno


    Full Text Available The consumption need of soybean that reached up to 2,5-3 million tons per year has made Indonesiaimports this commodity 1,95 million tons from countries that adopt Genetically Modified (GM soybean.Soybean utilization for tempe producers is about 50% from total its supply. The aim of this research wasto evaluate the safety of tempe made from GM soybean, by a subchronic test approach using male Sprague-Dawley rats. Toxicity evaluation of tempe from soybean GM was done based on EFSA (2011 principalusing animal laboratory. For 90 days, three groups of male rats (each group contain seven rats werefeeding with tempe flour from GM soybean, tempe flour from non-GM soybean and control group wasfeeding with casein as a protein source. All rats were terminated on day 90,where the blood, liver andkidney were collected. There were no significant differences on liver and kidney weight between treatment.Hematology analysis showed the level of Hb, erythrocyte, leucocyte, trombocyte and hematocryte were notsignificantly different in between group. Serum analysis on SGOT, SGPT, total protein, albumin, globulin,blood glucose, triglyceride, ureum and creatinin level were also showed no difference between groups. As aconclusion, the consumption of tempe derived from GM soybean was safe, and cause no adverse effect onhealth.

  4. Types de verbes et temps verbaux dans le Liber Regum

    José María GARCÍA MARTÍN


    Full Text Available L’étude des types de verbes et des temps verbaux employés dans le Liber Regum nous permet de conclure que les concepts de devoir et de cause n’existent pas pour l’auteur de l’œuvre. Seule l’action en soi est importante pour lui. Le rédacteur cherche à souligner l’action, et l’action pour l’action. Pour y parvenir, il se place volontiers dans le passé, son temps verbal favori, ce qui lui permet de mettre en relief un autre facteur : l’appartenance des rois aux lignages qui constituent le vrai protagoniste et l’objectif de son travail. Ces traits linguistiques sont, en même temps, les caractéristiques les plus remarquables des textes historiques « nus », dépourvus de toute intention théorique ou de toute réflexion. Ces silences ont une signification. De même que dans un texte musical, les silences servent à bâtir le sens global du texte. On respecte aussi là le principe structural de l’interdépendance de tous les éléments d’un système.El estudio de los tipos de verbos y de los tiempos verbales empleados en el Liber Regum nos permite concluir que los conceptos de deber y de causa no existen para el autor de la obra, solamente la acción en sí misma tiene importancia para él. El redactor de estas páginas busca subrayar la acción, la acción por la acción, y, para conseguirlo, se sitúa en el pasado, su tiempo verbal preferido, lo que le permite poner de relieve otro factor, la pertenencia de sus reyes a los linajes que constituyen su verdadero protagonista y el objetivo de su trabajo. Aquellos rasgos lingüísticos, al mismo tiempo, son las características más notables de los textos históricos “desnudos”, desprovistos de toda intención teórica y de toda reflexión. Esos silencios tienen significación. De la misma manera que en un texto musical, los silencios sirven para construir el sentido global del texto. Se respeta así el principio estructural de la interdependencia de todos los

  5. An Investigation of Reverse Flotation Separation of Sericite from Graphite by Using a Surfactant: MF

    Yangshuai Qiu


    Full Text Available In this paper, a surfactant, atlox4862 (formaldehyde condensate of methyl naphthalene sulfonic sodium salt (MF, was introduced as a depressant for reverse flotation separation of sericite from graphite. Natural flake graphite has a strong hydrophobic property. After interacting with MF, the graphite became moderately hydrophilic. The flotation results showed that MF had a depressing ability for both sericite and graphite and that the flotation separation of sericite from graphite was attributed to the different declining levels of recovery between graphite and sericite with increased MF concentration. For a pulp pH of 8 and a MF concentration of 250 mg/L, the recovery rates of sericite and graphite were 89.7% and 11.3%, respectively. The results of the FTIR spectra and zeta potential measurements demonstrated that the interaction of MF with graphite and sericite is mainly through electrostatic attraction. MF was preferred to adsorb on the surface of graphite, decreasing its zeta potential and improving its hydrophilicity more than that of sericite.

  6. (g, f) - Factors in Bipartite (mg ,mf ) - Graphs%二分(mg,mf)-图中的(g,f)-因子

    禹继国; 刘桂真


    设G是一个二分图具有顶点集V(G)和边集E(G).设g和f是定义在V(G)上的两个正整值函数使对任意的x∈V(G)有g(x)≤f(x).G的一个(g,f)-因子H是G的一个生成子图满足g(x)≤dH(x)≤f(x).若图G本身是一个(g,f)-因子,则称G是一个(g,f)-图.本文得到一个(mg,mf)-图具有特殊性质的(g,f)-因子的充分条件,从而推广了文献[6]中的一个结果.%Let G be bipartite a graph with vertex set V(G)and edge set E(G)let g and f be two positive ingeger-valued functions defined on V(G)such that g(x)≤ f(x).A(g,f)- factor H of G is a spanning subgraph of G satisfying g(x)≤ dH(x)≤ f(x).A graph G is a(g,f)- graph means that G itself is a(g.f)- factor.In this paper sufficient conditions for a bipartite(mg,m f)- graph to have a(g,f)- factor with special properties are given.Therefore the result in[5]is generalized.

  7. Stämföringar av Bud Powell : En studie om Bud Powells sätt att stämföra

    Sjöstrand, Samuel


    Syftet med examensarbetet är att erbjuda pianister en möjlighet att lära sig att använda Bud Powells sätt att stämföra ackord. Frågorna som kommer att diskuteras är: 1.Vad är bebop? 2. Vem var Bud Powell? 3. Hur stämförde Powell ackord? För att besvara dessa forskningsfrågor baserar jag min metod på litteraturstudier och transkriptioner av inspelningar. Detta görs utifrån en hermeneutisk metod. I arbetet diskuteras Powells sätt att stämföra ackord ur ett pedagogiskt perspektiv och användning ...

  8. Les modalités du temps chez Benjamin Franklin

    Elise Marienstras


    Full Text Available La renommée multiséculaire de Benjamin Franklin tient surtout à sa qualité d'homme des Lumières. Cet article s'intéresse à l'extrême complexité de sa pensée sur le temps comme concept, comme mode de vie, comme outil pour s'enrichir, et comme vision générale du progrès du genre humain.The long-lasting fame of Benjamin Franklin rests principally on his characteristics as a scientist and a philosopher of the Enlightenment. This article raises the question of Franklin's conception of time and examines his numerous uses of « time » as a concept, as a way of living, as a means to obtain wealth, as a general vision of the progress of mankind.

  9. Louise Fines, Recherche qualitative et cyber-espace-temps, 2011

    Natalia Leclerc


    L’ouvrage de Louise Fines s’intéresse au recours aux médias en temps réel pour analyser les processus sociaux contemporains, et en particulier les crimes « en col blanc ». Il prend pour illustration l’affaire Enron, scandale financier qui a secoué les États-Unis en 2001. Son intérêt majeur est la présentation d’une méthodologie, celle du jeu, et le rappel des grands principes de recherche. Le lecteur peut toutefois rester sur sa faim : le discours fournit des grandes orientations, de nombreus...

  10. Louise Fines, Recherche qualitative et cyber-espace-temps, 2011

    Natalia Leclerc


    Full Text Available L’ouvrage de Louise Fines s’intéresse au recours aux médias en temps réel pour analyser les processus sociaux contemporains, et en particulier les crimes « en col blanc ». Il prend pour illustration l’affaire Enron, scandale financier qui a secoué les États-Unis en 2001. Son intérêt majeur est la présentation d’une méthodologie, celle du jeu, et le rappel des grands principes de recherche. Le lecteur peut toutefois rester sur sa faim : le discours fournit des grandes orientations, de nombreus...

  11. Bacteriocin protein BacL1 of Enterococcus faecalis is a peptidoglycan D-isoglutamyl-L-lysine endopeptidase.

    Kurushima, Jun; Hayashi, Ikue; Sugai, Motoyuki; Tomita, Haruyoshi


    Enterococcus faecalis strains are commensal bacteria in humans and other animals, and they are also the causative agent of opportunistic infectious diseases. Bacteriocin 41 (Bac41) is produced by certain E. faecalis clinical isolates, and it is active against other E. faecalis strains. Our genetic analyses demonstrated that the extracellular products of the bacL1 and bacA genes, which are encoded in the Bac41 operon, coordinately express the bacteriocin activity against E. faecalis. In this study, we investigated the molecular functions of the BacL1 and BacA proteins. Immunoblotting and N-terminal amino acid sequence analysis revealed that BacL1 and BacA are secreted without any processing. The coincidental treatment with the recombinant BacL1 and BacA showed complete bacteriocin activity against E. faecalis, but neither BacL1 nor BacA protein alone showed the bacteriocin activity. Interestingly, BacL1 alone demonstrated substantial degrading activity against the cell wall fraction of E. faecalis in the absence of BacA. Furthermore, MALDI-TOF MS analysis revealed that BacL1 has a peptidoglycan D-isoglutamyl-L-lysine endopeptidase activity via a NlpC/P60 homology domain. These results collectively suggest that BacL1 serves as a peptidoglycan hydrolase and, when BacA is present, results in the lysis of viable E. faecalis cells.

  12. 76 FR 66328 - Callaway Golf Ball Operations, Inc., Including On-Site Leased Workers From Reliable Temp Services...


    ... From Reliable Temp Services, Inc., Johnson & Hill Staffing and Apollo Security, Chicopee, MA; Amended... from Reliable Temp Services, Inc., and Johnson and Hill Staffing, Chicopee, Massachusetts. The workers... Operations, Inc., including on-site leased workers from Reliable Temp Services, Inc., Johnson & Hill Staffing...

  13. Gram negative shuttle BAC vector for heterologous expression of metagenomic libraries.

    Kakirde, Kavita S; Wild, Jadwiga; Godiska, Ronald; Mead, David A; Wiggins, Andrew G; Goodman, Robert M; Szybalski, Waclaw; Liles, Mark R


    Bacterial artificial chromosome (BAC) vectors enable stable cloning of large DNA fragments from single genomes or microbial assemblages. A novel shuttle BAC vector was constructed that permits replication of BAC clones in diverse Gram-negative species. The "Gram-negative shuttle BAC" vector (pGNS-BAC) uses the F replicon for stable single-copy replication in E. coli and the broad-host-range RK2 mini-replicon for high-copy replication in diverse Gram-negative bacteria. As with other BAC vectors containing the oriV origin, this vector is capable of an arabinose-inducible increase in plasmid copy number. Resistance to both gentamicin and chloramphenicol is encoded on pGNS-BAC, permitting selection for the plasmid in diverse bacterial species. The oriT from an IncP plasmid was cloned into pGNS-BAC to enable conjugal transfer, thereby allowing both electroporation and conjugation of pGNS-BAC DNA into bacterial hosts. A soil metagenomic library was constructed in pGNS-BAC-1 (the first version of the vector, lacking gentamicin resistance and oriT), and recombinant clones were demonstrated to replicate in diverse Gram-negative hosts, including Escherichia coli, Pseudomonas spp., Salmonella enterica, Serratia marcescens, Vibrio vulnificus and Enterobacter nimipressuralis. This shuttle BAC vector can be utilized to clone genomic DNA from diverse sources, and then transfer it into diverse Gram-negative bacterial species to facilitate heterologous expression of recombinant pathways.

  14. MF-CRA: Multi-Function Cognitive Radio Architecture for Space Communications Project

    National Aeronautics and Space Administration — EpiSys Science, Inc. and University of Arizona propose to develop, implement, and demonstrate Multi-Function Cognitive Radio Architecture (MF-CRA) for Space...


    Nelis Imanningsih


    Full Text Available PROCESSING FACTORS AND INGREDIENTS CONTRIBUTED IN TEMPE FORMULA'S OFF FLAVOUR.Background: Tempe Formula is processed food with tempe as the main ingredient. was previously formulated as infant formula and under five years children formula who have diarrhea problem. In later researches, tempe Fromula was found to be efective to increase nutritional satatus of severe malnourished children, to cure gastrointestinal infection of 6-24 months children, and had benefit to repair dislipldemia in adults and bone reformation of pre and post menopause women. However, this formula had off flavour that limit Its utilization. Methods: The design is laboratory experiment. The type of research is explorative. The panelist is trained panelist.Results: The result shows that off flavour component identified were beany odour, moldy odour, tangy taste and bitter taste. Tempe processing with half boiled of soybean and steam sterilization with traditional starter of mixed innoculum gave the best sensori quality. Less intensity of beany flavour and bitter taste were gained by improving the composition of palm oil and sesame oil with composition 1:1. The additon of mocca and milk flavours also reduced the beany odour of the formula. Conclusion: Improved tempe formula was determined to have higher intensity of sweetness, less intensity of saltyness, bitemess and tangy taste, and less beany, rancid, and moldy odours than original formula.Keywords: tempe formula, off flavour, processing

  16. Pemberian Tepung Tempe Meningkatkan Kualitas Tulang pada Tikus Ovariektomi (ADMINISTRATION OF TEMPE FLOUR IMPROVING THE QUALITY OF OVARIECTOMY-RATS BONE

    I Nyoman Suarsana


    Full Text Available Study to determine the potential of tempe flour in improving bone quality of ovariectomized rats (ovxbased on calcium (Ca and phosphorus(P levels in the plasma and bones; osteoblast and osteoclastprofiles have been conducted for 4 months. A total of 20 female Sprague Dawley albino rats, age of 3months and average body weight of 200 g were used in this study. The rats were divided into 4 groups,i.e.normal rats + diets (K0; normal rats +tempe flour (K1; ovx + diets (OV0; and ovx + tempe flour (OV1,respectively. The Ca and P levels in plasma and bones were analyzed using Atomic AbsorptionSpectrophotometer (AAS and spectrophotometric methods. In addition, the profiles of osteoblast andosteoclast were also observed. The results showed that Ca and P levels in plasma and bones of normal ratswere 11.08 mg/dL and 7.06 mg/dL; 30.88 mg/dL and 18.63 mg/dL, respectively. The highest Ca and P levelsin both plasma and bones were observed in normal rats which were given tempe flour (K1, 11.25 mg/dLand 7.42 mg/dL; and 31.60 mg/dL and 19.78 mg/dL, respectively. Similarly, Ca and P levels in plasma andbones of ovxwhich were given tempe flour were slightly higher (10.91 mg/dL and 6.96 mg/dL; and 29.89 mg/dL and 17.87 mg/dL compared to ovx without tempe flour diets (9.38 mg/dL and 6.46mg/dL; and 26.58 mg/dL and 16.75 mg/dL. The numbers of osteblast was found slightly higher both in normal rats and ovxwhich were given tempe flour; whereas slightly decreased of osteoclast was observed only in ovx which weregiven tempe flour. The administration of tempe flour in ovx diets could improved bone quality as indicatedby the Ca and P levels in plasma and bones and decreased numbers of osteoclast.

  17. Pemberian Tepung Tempe Meningkatkan Kualitas Tulang pada Tikus Ovariektomi (ADMINISTRATION OF TEMPE FLOUR IMPROVING THE QUALITY OF OVARIECTOMY-RATS BONE

    I Nyoman Suarsana


    Full Text Available Study to determine the potential of tempe flour in improving bone quality of ovariectomized rats (ovxbased on calcium (Ca and phosphorus(P levels in the plasma and bones; osteoblast and osteoclastprofiles have been conducted for 4 months. A total of 20 female Sprague Dawley albino rats, age of 3months and average body weight of 200 g were used in this study. The rats were divided into 4 groups,i.e.normal rats + diets (K0; normal rats +tempe flour (K1; ovx + diets (OV0; and ovx + tempe flour (OV1,respectively. The Ca and P levels in plasma and bones were analyzed using Atomic AbsorptionSpectrophotometer (AAS and spectrophotometric methods. In addition, the profiles of osteoblast andosteoclast were also observed. The results showed that Ca and P levels in plasma and bones of normal ratswere 11.08 mg/dL and 7.06 mg/dL; 30.88 mg/dL and 18.63 mg/dL, respectively. The highest Ca and P levelsin both plasma and bones were observed in normal rats which were given tempe flour (K1, 11.25 mg/dLand 7.42 mg/dL; and 31.60 mg/dL and 19.78 mg/dL, respectively. Similarly, Ca and P levels in plasma andbones of ovxwhich were given tempe flour were slightly higher (10.91 mg/dL and 6.96 mg/dL; and 29.89 mg/dL and 17.87 mg/dL compared to ovx without tempe flour diets (9.38 mg/dL and 6.46mg/dL; and 26.58 mg/dL and 16.75 mg/dL. The numbers of osteblast was found slightly higher both in normal rats and ovxwhich were given tempe flour; whereas slightly decreased of osteoclast was observed only in ovx which weregiven tempe flour. The administration of tempe flour in ovx diets could improved bone quality as indicatedby the Ca and P levels in plasma and bones and decreased numbers of osteoclast.

  18. Conception et développement d’application de gestion d’emploi du temps

    AYAD, Soriya; BENMANSOUR, Fatima Zohra


    Ce modeste travail s’intéresse à la conception et la réalisation d’un système de gestion d’emploi du temps pour l’université, les objectifs principaux de ce système est de faciliter l’établissement des emplois du temps au niveau des départements, permet la création et la modification des emplois du temps ainsi la gestion de quelque conflit qui peuvent exister (conflit d’enseignant, salle). This modest work focuses on the design and implementation of a management system sched...

  19. Library Resources for Bac End Sequencing. Final Technical Report

    Pieter J. de Jong


    Studies directed towards the specific aims outlined for this research award are summarized. The RPCI II Human Bac Library has been expanded by the addition of 6.9-fold genomic coverage. This segment has been generated from a MBOI partial digest of the same anonymous donor DNA used for the rest of the library. A new cloning vector, pTARBAC1, has been constructed and used in the construction of RPCI-II segment 5. This new cloning vector provides a new strategy in identifying targeted genomic regions and will greatly facilitate a large-scale analysis for positional cloning. A new maleCS7BC/6J mouse BAC library has been constructed. RPCI-23 contain 576 plates (approx 210,000 clones) and represents approximately 11-fold coverage of the mouse genome.

  20. Entre-temps, Intertextualité et critique

    Yun Sun Limet


    Full Text Available Pensée pour la critique, la notion d’intertextualité peut, à première vue, sembler redondante ou sans pertinence. Nous montrons, à partir d’un chapitre de Maurice Blanchot tiré de L’Entretien infini, qu’au contraire, elle prend tout son sens comme dimension spécifique de tout texte littéraire.Le texte critique n’est pas seulement ce discours superflu, qui vient se greffer sur les œuvres tel un parasite, il est indissociable de l’écriture même des œuvres, parce qu’il indique, rend visible peut-être, ce que l’œuvre elle-même doit aux œuvres qui l’ont précédée et qu’elle poursuit. Il peut, dans cette perspective, n’être donc pas discursif, mais consti­tuer une dimension du texte, ainsi que le sous-entendait Genette dans Palimpsestes lorsqu’il exemplifiait la catégorie métatextuelle par une référence non explicite (Diderot dans Hegel. On pourra avancer, à partir de la réflexion blancho­tienne, que la critique et l’intertextualité sont une seule et même réalité du texte, si l’on confère à la critique le sens quasi non discursif qu’on peut déduire des propositions de Blanchot dans « Le pont de bois ». En ce sens, l’intertextua­lité critique ne serait pas une sorte de sous-catégorie de l’intertextualité, mais toute intertextualité serait fondamenta­lement critique. Il nous semble que ce lien entre intertextualité et critique ouvre une voie de réflexion sur la dimension temporelle de la littérature. En reprenant la définition lévinassienne du temps, nous suggérons que l’intertextualité révèle la dimension fondamentale à l’autre qui se joue dans la littérature et que cette dimension est le temps.

  1. The BepiColombo Archive Core System (BACS)

    Macfarlane, A. J.; Osuna, P.; Pérez-López, F.; Vallejo, J. C.; Martinez, S.; Arviset, C.; Casale, M.


    BepiColombo is an interdisciplinary ESA mission to explore the planet Mercury in cooperation with JAXA. The mission consists of two separate orbiters: ESA's Mercury Planetary Orbiter (MPO) and JAXA's Mercury Magnetospheric Orbiter (MMO), which are dedicated to the detailed study of the planet and its magnetosphere. The MPO scientific payload comprises 11 instruments covering different scientific disciplines developed by several European teams. The MPO science operations will be prepared by the MPO Science Ground Segment (SGS) located at the European Space Astronomy Centre (ESAC) in Madrid. The BepiColombo Archive Core System (BACS) will be the central archive in which all mission operational data will be stored and is being developed by the Science Archives and Virtual Observatory Team (SAT) also at ESAC. The BACS will act as one of the modular subsystems within the BepiColombo Science Operations Control System (BSCS), (Vallejo 2014; Pérez-López 2014) which is under the responsibility of the SGS, with the purpose of facilitating the information exchange of data and metadata between the other subsystems of the BSCS as well as with the MPO Instrument Teams. This paper gives an overview of the concept and design of the BACS and how it integrates into the science ground segment workflow.

  2. An active piggyBac-like element in Macdunnoughia crassisigna

    Min Wu; Zhi-Chan Sun; Chun-Lin Hu; Gu-Feng Zhang; Zhao-Jun Han


    In this paper,a highly conserved piggyBac-like sequence.designated as McrPLE was cloned from a lepidopteran insect,Macdunnoughia crassisigna.It is 2 472 bp long in full length with a single open reading frame and encodes a 595 amino acid transPOsase.It shares identical terminal and sub-terminal repeats with T. ni IFP2 and iS flanked by the typical TTAA target-site duplications.Alignment and phylogeneric analysis revealed that McrPLE had greater than 99.5%identity and appeared to be the closest one in phylogeny to IFP2 among the PLEs so far found in various species.Plasmid.based excision and transposition assay proved it Was mobile in cell culture.Otherwise.McPLE element and all other highly conserved IFP2 sequences reported previously were found to share three corrution nucleotide substitutions.This suggests that the original IFP2 may be a related variant of a predecessor element that became widespread.The existence of nearly identical piggyBac sequence in reproductively isolated species Was thought also a strong indication of horizontal transmission,which raises important considerations for the stability and practical use of piggyBac transformation vectors.

  3. Clinical comparison of the Bactec Mycosis IC/F, BacT/Alert FA, and BacT/Alert FN blood culture vials for the detection of candidemia.

    Ericson, Eva-Lena; Klingspor, Lena; Ullberg, Måns; Ozenci, Volkan


    The present study analyzed the performance of Bactec Mycosis IC/F, BacT/Alert FA, and BacT/Alert FN vials in detection and time to detection (TTD) of Candida spp. in 179 simultaneous blood cultures. The Mycosis IC/F, BacT/Alert FA, and BacT/Alert FN vials could detect Candida spp. in 144 (80.45%) of 179, 149 (83.24%) of 179, and 8 (4.47%) of 179 samples, respectively. With the presence of antifungal therapy, the numbers of positive vials were higher in BacT/Alert FA compared to Mycosis IC/F, 87/99 versus 73/99, respectively (P IC/F than in BacT/Alert FA vials without antifungal therapy, 20.89 (9.33) versus 28.26 (9.77), respectively (P IC/F than in BacT/Alert FA vials, 28/30 and 19/30, respectively (P = 0.01). The present data show that the use of Bactec Mycosis IC/F together with BacT/Alert FA vials might improve the detection of Candida spp.

  4. Construction of the BAC Library of Small Abalone (Haliotis diversicolor) for Gene Screening and Genome Characterization.

    Jiang, Likun; You, Weiwei; Zhang, Xiaojun; Xu, Jian; Jiang, Yanliang; Wang, Kai; Zhao, Zixia; Chen, Baohua; Zhao, Yunfeng; Mahboob, Shahid; Al-Ghanim, Khalid A; Ke, Caihuan; Xu, Peng


    The small abalone (Haliotis diversicolor) is one of the most important aquaculture species in East Asia. To facilitate gene cloning and characterization, genome analysis, and genetic breeding of it, we constructed a large-insert bacterial artificial chromosome (BAC) library, which is an important genetic tool for advanced genetics and genomics research. The small abalone BAC library includes 92,610 clones with an average insert size of 120 Kb, equivalent to approximately 7.6× of the small abalone genome. We set up three-dimensional pools and super pools of 18,432 BAC clones for target gene screening using PCR method. To assess the approach, we screened 12 target genes in these 18,432 BAC clones and identified 16 positive BAC clones. Eight positive BAC clones were then sequenced and assembled with the next generation sequencing platform. The assembled contigs representing these 8 BAC clones spanned 928 Kb of the small abalone genome, providing the first batch of genome sequences for genome evaluation and characterization. The average GC content of small abalone genome was estimated as 40.33%. A total of 21 protein-coding genes, including 7 target genes, were annotated into the 8 BACs, which proved the feasibility of PCR screening approach with three-dimensional pools in small abalone BAC library. One hundred fifty microsatellite loci were also identified from the sequences for marker development in the future. The BAC library and clone pools provided valuable resources and tools for genetic breeding and conservation of H. diversicolor.

  5. Preliminary Study of BAC Library Construction in Black Tiger Shrimp, Penaeus monodon



    Full Text Available Availability of shrimp genome information is necessary for shrimp genetic studies and large-insert DNA clones, bacterial artificial chromosome (BACs serve as valuable tools for obtaining genomic sequences. The construction of a BAC library was achieved from this preliminary study of P. monodon. High molecular weight (HMW genomic DNA was isolated from abdominal muscle and the resulting hemocytes were of high quality and sufficient quantity for a BAC library construction. This BAC library was constructed from hemocyte HMW genomic DNA fragments ranging between 100 and 300 kb ligated to a pBAC-lac vector. The average insert size of the BAC clones was calculated as 100 kb ranging from 40 - 150 kb with over 50 % of the clones containing inserts larger than 100 kb. This BAC library contained approximately 60,000 BAC clones representing a 3-fold coverage of the haploid shrimp genome size. Furthermore, the consistency of BAC clones was also proven as no apparent rearrangements were observed before and after 100 generations in serial growth. From the above result, it is essential to improve the insert size and clone numbers of the BAC library to be a powerful tool in the future.

  6. A BAC clone of MDV strain GX0101 with REV-LTR integration retained its pathogenicity

    SUN AiJun; LAWRENCE Petherbridge; ZHAO YuGuang; LI YanPeng; NAIR Venugopal K; CUI ZhiZhong


    The complete genome of Marek's disease virus (MDV) strain GX0101,which was integrated with the LTR sequences of REV,was cloned in Escherichia coli as a bacterial artificial chromosome (BAC).BAC vector sequences were introduced into the US2 locus of the MDV genome by homologous recombination.The viral DNA containing the BAC vector was used to transform Escherichia coli strain of DH10B.Then the recombinant virus was successfully rescued by transfection of the recombinant BAC DNA into primary chicken embryo fibroblast (CEF).This BAC viral clone was named bac-GX0101.When the reconstituted virus was inoculated into 1-day-old birds,visceral tumors could be detected as early as 62 d post infection.There was no difference in growth ability and pathogenicity to birds between the BAC derived virus and its parental virus.The BAC derived virus maintained its oncogenicity and immunosuppressive effects.In conclusion,the complete genome of GX0101 strain was successfully cloned into BAC and the infectious clone was rescued.With the powerful BAC manipulation system,the infectious clone will provide a useful tool for further understanding the functional roles of the inserted REV-LTR sequence in the GX0101 strain of MDV.

  7. Validation of the tablet-administered Brief Assessment of Cognition (BAC App).

    Atkins, Alexandra S; Tseng, Tina; Vaughan, Adam; Twamley, Elizabeth W; Harvey, Philip; Patterson, Thomas; Narasimhan, Meera; Keefe, Richard S E


    Computerized tests benefit from automated scoring procedures and standardized administration instructions. These methods can reduce the potential for rater error. However, especially in patients with severe mental illnesses, the equivalency of traditional and tablet-based tests cannot be assumed. The Brief Assessment of Cognition in Schizophrenia (BACS) is a pen-and-paper cognitive assessment tool that has been used in hundreds of research studies and clinical trials, and has normative data available for generating age- and gender-corrected standardized scores. A tablet-based version of the BACS called the BAC App has been developed. This study compared performance on the BACS and the BAC App in patients with schizophrenia and healthy controls. Test equivalency was assessed, and the applicability of paper-based normative data was evaluated. Results demonstrated the distributions of standardized composite scores for the tablet-based BAC App and the pen-and-paper BACS were indistinguishable, and the between-methods mean differences were not statistically significant. The discrimination between patients and controls was similarly robust. The between-methods correlations for individual measures in patients were r>0.70 for most subtests. When data from the Token Motor Test was omitted, the between-methods correlation of composite scores was r=0.88 (df=48; pBAC App generates results consistent with the traditional pen-and-paper BACS, and support the notion that the BAC App is appropriate for use in clinical trials and clinical practice.

  8. [Expression of limulus Factor C in silkworm larvae by Bac-to-Bac/BmNPV baculovirus expression system].

    Qi, Jing; Liu, Tao; Li, Zhen; Gong, Chengliang; Wu, Haiping; Zhang, Chun


    Limulus Factor C, a serine protease zymogen from the amoebocytes of the limulus, has high affinity for endotoxin. When Factor C is activated by endotoxin, it hydrolyses artificial tripeptide substrate and measurable products are released, so it can be used as an alternative reagent for endotoxin analysis. Factor C gene of Tachypleus tridentatus was obtained through RT-PCR and the recombinant protein was expressed by Bac-to-Bac/BmNPV baculovirus expression system in silkworm larvae. The activity of Factor C was detected with diluted serum of silkworm larvae, and the sensitivity of endotoxin detected was 0.2 EU/mL when the serum was diluted at 1:500. The silkworm larvae expressed limulus Factor C could be used to develop a new low-cost endotoxin test reagent.

  9. La ville du Sud en temps réel

    Benjamin Bosselut


    Full Text Available Cet article démontre l’utilité de la photographie aérienne sous cerf-volant pour les études urbaines, et en particulier pour les villes du Sud qui connaissent une croissance rapide. Cette technique est testée à Nouakchott (Mauritanie dans le cadre d’une étude d’impact d’un programme d’habitat social. L’absence de données cartographiques actualisées est ainsi compensée par cet outil qui permet de voir l’évolution de la ville en temps réel. Ce texte explique les différentes manières d’utiliser ces photos et étapes pour produire des données exploitables.This paper shows how the kite aerial photography can be used in urban studies, relying on a concrete application experience for a social housing program in Nouakchott (Mauritania. Particularly, it is useful in order to study Southern cities involved by urban sprawl. This tool allows to see urban developments « in real-time » and should compensate the lack of mapping up-to-date data. This article explains how we can use kite pictures and technical procedures to produce exploitable data.

  10. Rééquilibrage des temps autour de la retraite

    Anca Boboc


    Full Text Available Le passage à la retraite ne se réduit pas à une date séparant hermétiquement deux périodes disjointes de l’existence. D’une part, ce passage présente une certaine durée, s’étendant de part et d’autre de la date formelle de « cessation d’activité ». D’autre part, le temps de la retraite est aussi l’occasion d’entreprendre des activités qui, nouvelles ou en prolongement, s’inscrivent dans le parcours antérieur des individus. Plus précisément, ce passage particulier est l’occasion de repenser l’organisation des différentes temporalités sociales, d’articuler différemment activités professionnelles — pour ceux qui cumulent emploi et retraite —, associatives, familiales, artistiques, ludiques, etc. Il en résulte une diversité des parcours de retraite, comme permet de l’apprécier la variété des activités qu’entreprennent les retraités. Si cette diversité est le reflet d’une certaine autonomie dans les choix des acteurs, elle dépend également des libertés de choix — « capacités » — qui leur sont réellement accessibles. Dans ce sens, l’article examine les apports et les limites d’un raisonnement en termes d’« environnement capacitant », pour rendre compte de l’inégale distribution des capacités à s’emparer des opportunités offertes par la retraite.Plus précisément, l’environnement capacitant désignera l’ensemble constitué des cadres temporels dans lesquels les individus construisent leurs parcours de vie avant la retraite. Dans ce sens, on peut identifier trois cadres temporels constitutifs des parcours de vie : l’axe des politiques macro-économiques, celui des politiques d’entreprise (ou sectorielles et celui des biographies familiales. Chacun de ces trois cadres est lui-même le lieu d’une tension entre « temps comptables » rigides et « temps vécus » caractérisés par une plus grande souplesse temporelle. Selon la résultante de ces

  11. BcMF26a and BcMF26b Are Duplicated Polygalacturonase Genes with Divergent Expression Patterns and Functions in Pollen Development and Pollen Tube Formation in Brassica campestris.

    Meiling Lyu

    Full Text Available Polygalacturonase (PG is one of the cell wall hydrolytic enzymes involving in pectin degradation. A comparison of two highly conserved duplicated PG genes, namely, Brassica campestris Male Fertility 26a (BcMF26a and BcMF26b, revealed the different features of their expression patterns and functions. We found that these two genes were orthologous genes of At4g33440, and they originated from a chromosomal segmental duplication. Although structurally similar, their regulatory and intron sequences largely diverged. QRT-PCR analysis showed that the expression level of BcMF26b was higher than that of BcMF26a in almost all the tested organs and tissues in Brassica campestris. Promoter activity analysis showed that, at reproductive development stages, BcMF26b promoter was active in tapetum, pollen grains, and pistils, whereas BcMF26a promoter was only active in pistils. In the subcellular localization experiment, BcMF26a and BcMF26b proteins could be localized to the cell wall. When the two genes were co-inhibited, pollen intine was formed abnormally and pollen tubes could not grow or stretch. Moreover, the knockout mutants of At4g33440 delayed the growth of pollen tubes. Therefore, BcMF26a/b can participate in the construction of pollen wall by modulating intine information and BcMF26b may play a major role in co-inhibiting transformed plants.

  12. La renaissance du temps pour en finir avec la crise de la physique

    Smolin, Lee


    La question du Temps est au coeur de toutes les problématiques scientifiques, de la cosmologie à la mécanique quantique. L’un des plus grands physiciens d’aujourd’hui, Lee Smolin, expose sa conception du Temps et ses implications sur la perception de notre environnement. Le Temps est-il une illusion qui cache une vérité éternelle, ou une réalité physique de notre Univers ? Lee Smolin opte pour la réalité du Temps, s’opposant en cela à la majorité des penseurs, physiciens ou philosophes, inspirés pour les uns par la théorie de la Relativité d’Einstein et pour les autres par les idées platoniciennes.

  13. Tempe as language-an Indonesian village revitalisation mini-project

    Bradley, Kirsten


    In Kandangan, a village in the Temmanggung Regency (Kabupaten Temanggung) in the Province of Central Java, tempe bunguk used to be a daily food-using locally grown bunguk beans-and made in many households...

  14. Low-Cost Innovative Hi-Temp Fiber Coating Process for Advanced Ceramic Matrix Composites Project

    National Aeronautics and Space Administration — MATECH GSM (MG) proposes 1) to demonstrate a low-cost innovative Hi-Temp Si-doped in-situ BN fiber coating process for advanced ceramic matrix composites in order to...

  15. Unicit\\'e trajectorielle des \\'equations diff\\'erentielles stochastiques avec temps local et temps de s\\'ejour au bord

    Belfadli, Rachid


    English version of the abstract. We study path-wise uniqueness property of a class of stochastic differential equations with local time and sojourn time in the boundary. ----- French version of the abstract. Nous \\'etudions l'unicit\\'e trajectorielle des solutions d'une classe d'\\'equations diff\\'erentielles stochastiques avec temps local et temps de s\\'ejour au bord. Nous utilisons le probl\\'eme des martingales associ\\'e pour montrer qu'il y a unicit\\'e en loi, puis nous \\'etablissons que le supremum de deux solutions est encore une solution.


    Samuel Samuel


    Full Text Available Danau Tempe merupakan tipe danau rawa banjiran yang dikenal sebagai danau yang banyak menghasilkan ikan air tawar di Propinsi Sulawesi Selatan. Penelitian status trofik dan estimasi potensi produksi ikan di Danau Tempe dilakukan pada bulan Pebruari-Nopember 2010, bertujuan untuk mengetahui kondisi terkini tentang status trofik dan potensi produksi ikan pada perairan danau. Penelitian bersifat survei lapangan dan analisis di laboratorium. Survei dilakukan sebanyak 4 kali mewakili musim kemarau dan musim penghujan. Pengukuran parameter kualitas air dilaksanakan di sepuluh stasion yang dipilih secara purposif. Hasil penelitian menunjukkan bahwa kualitas air Danau tempe masih ideal mendukung kehidupan dan perkembanganbiakan ikan serta organisme air lainnya sebagai pakan ikan.  Status trofik perairan Danau Tempe sesuai kriteria Trophic Status Index, mempunyai indeks rata-rata 56,6 - 59,8 dengan status “eutrofik ringan”, ditandai melimpahnya tumbuhan air di perairan danau.  Angka potensi produksi ikan berkisar antara 69-148 kg/ha/tahun dengan nilai rata-rata 95 kg/ha/tahun. Dengan luasan Danau Tempe antara 15.000-20.000 hektar menghasilkan produksi ikan antara 1428 -1904 ton/tahun.   Lake Tempe is a floodplain lake that produces a lot of freshwater fish in South Sulawesi Province. Research on trophic status and estimation of potential fish production in Lake Tempe was conducted from February-November, 2010. Aim of this study was to obtain information on the current condition of the trophic status and potential fish production in the lake waters. This study is based on the field survey and analysis in the laboratory. Surveys were conducted  4 times to represent the dry and rainy seasons, and water quality parameter measurements were carried out at ten stations selected purposively. The results shows that water quality parameters of Lake Tempe was still quite ideal to support aquatic life and the development of fish and other aquatic organisms

  17. Colour and pH changes of tempe during extended fermentation

    Muzdalifah, D.; Athaillah, Z. A.; Nugrahani, W.; Devi, A. F.


    Tempe is a nutritious food, prepared mostly from soybeans and was originated in Indonesia. Tempe is sometimes collected beyond its maturity age for culinary purpose. The studies of overripe tempe ranged from microbiology, chemical and nutritional changes, functionality and safety, to sensorial aspect. Study which follows pH and colour changes of tempe during fermentation, however, is scarce. The objectives of this study were to investigate and model the colour and pH changes of tempe and the mould mycelia during extended fermentation with Rhizopus spp. up to 156 hours. Our investigation revealed that both lightness soybeans and mycelia of the tempe decreased with increasing fermentation time while pH of the tempe increased. The decrease of both lightness followed simple cubic equations whilst the pH increased linearly with increasing time. The other a values of tempe decreased by one point in the first 72 h of fermentation and tended to increase later however did not reach the initial a value, The b value decreased by approximately two points during the first 24 h of fermentation and the changes during the rest of fermentation time were not significant. The colour changes were believed to be the results of increased numbers of Rhizopus spp which entered the death phase, increased amount of linoleic and linolenic unsaturated fatty acids which were prone to oxidation, and formation of red coloured vitamin B12. Meanwhile, the increase of pH was majorly because of protein break down which led to increased ammonia production. The utilisation of lactic acid for mould growth also contributed to the alkalinisation, however to a much lesser extent. The lactic acid was previously formed during the soaking which resulted in decrease in pH of initial soybeans.

  18. Characteristics Of Phytases From Soybeans And Microorganisms Involved In The Tempe Production

    K A Buckle2); Sutardi*


    Tempe was prepared from Forest variety of soybeans inoculated with pure culture of the mould Rhizopus oligosporus strain CT11K2. Partially purified phytases from soybeans, mould of the R. oligosporus strain CT11K2, yeasts (Endomycopsis burtonii, Candida diddensiae and Candida tropicalis) and bacteria (Streptococcus faecium and Streptococcus dysgalactiae) involved during tempe production were prepared according to procedure developed by Sutardi (1988). The crude phytases were characterized and...

  19. Uji Daya Terima Dan Nilai Gizi Mi Basah Dengan Penambahan Tempe Dan Wortel (Daucus carota L.)

    Gultom, Yohana Tetty


    Noodle is one of the most popular foodstaple in the community. Nowdays, the noodle was made as a replacement food of other staple foods such as rice. Generally, raw material of noodle is flour. However, the flour can also be modified with other foods such as tempe and carrot. Based on its nutrient composition, tempe and carrot are potential as a source of nutrition, which contains proteins, fat, calcium, phosphorus, iron, vitamin A, tiamin, vitamin C, riboflavin, niasin and fiber. The purpose...


    Yudith Herlinda


    Full Text Available Beberapa penelitian menunjukkan bahwa persentasi absorpsi zat besi kedele dan beberapa produk protein kedele tergolong rendah. Sekiranya tempe sebagai produk fermentasi kedele juga mempunyai daya absorpsi zat besi yang rendah, apakah ini akan juga menghambat penyerapan suplementasi besi yang diberikan pada penderita anemi gizi yang biasa mengkonsumsi tempe? Suatu penelitian telah dilakukan untuk mengetahui pengaruh konsumsi tempe terhadap suplementasi besi pada tikus yang menderita anemi gizi. Empat kelompok tikus percobaan diberi ransum yang defisien besi selama 6 minggu sehingga mengalami penurunan kadar hemoglobin dan hematokrit yang nyata dibanding dengan kelompok kontrol. Selanjutnya, kelompok tikus yang defisiensi besi tersebut selama 4 minggu berikutnya, disamping mendapat suplementasi zat besi juga mendapat ransum yang berbeda-beda, yaitu ransum yang sama dengan kelompok kontrol dan ransum yang mengandung campuran tempe dan sususkim dengan rasio protein tempe terhadap susu skim berbeda-beda, yaitu 10:90; 25:75; dan 50:50. Hasil penelitian menunjukkan bahwa ransum tikus dengan campuran tempe yang tertinggi pun (50:50 tidak mempengaruhi absorpsi zat besi yang diberikan sebagai tambahan pada tikus yang menderita anemi gizi besi.

  1. Nutritional and sensory characteristics of sari tempe formulated from import soybean (glycine max)

    Kurniadi, Muhamad; Andriani, Martina; Sari, Intan Indriana; Angwar, Mukhamad; Nurhayati, Rifa; Khasanah, Yuniar; Wiyono, Tri


    Tempe is traditional Indonesian food made from Rhizopus sp. fermentation of soybean. The aims of this research are to know the effect of the addition of water and CMC to nutritional and sensory characteristics of the sari tempe formulated from import soybean. The experimental design used in this study is entirely randomized design (CRD), which consists of two factors: variations addition of water with tempe (1:3, 1:5 and 1:7) and the variation of the addition of CMC concentration (0.05%; 0,10% and 0.15%). Sensory data were analyzed statistically using one-way ANOVA. If it showed significant results, then it is continued by real difference test using Duncan's Multiple Range Test (DMRT) at significance level α = 0.05. The results showed the best formula of sari tempe was F6 with 1:5 water ratio and 0.15% CMC concentration. Folate content and vitamin B6 decreased while processing sari tempe respectively 10.3 times and 2.7 times. Whereas, the vitamin B12 content is increased by 1.7 times. The best formula of sari tempe contains 90.96 % water content; 0.08 % ash content; 0.36 % fat content; 23.41 ppm vitamin B6; 337.49 ppm vitamin B12 and 17.31 ppm folate.


    Sri Murwanti


    Full Text Available The price of soybean in Indonesiasome times have soared uncontrollable. The producer (especially micro enterprises of tofu and tempe are no longerable to produce in that situation. Consequently the amount of tofu and tempe are rarely in the market, meanwhile they are one of the important needs of Indonesian people. In fact, the government adopted a policy of instant such as remove import duties on imported soybeans. The policy was not strategic and could be fatal, because the country would be flooded by soybean imports.While farmers were getting ready to go out of business. With quantitative and qualitative approaches, this paper analyzed regarding (1to analyze the impact of increasing soybean price to operating income of tempe producers with operating income analysis (2to analyze strategy of adjustments made by the producers of tempe to preserve their business with in depth interview. This analysis concluded that Operating income declined more than a half. That condition is very hard  to continue their business. If the capital of producers of tempe was not enough strong,  they would be going out of their business.  In such difficult conditions, they did innotive strategy by reducing the size of tempe though at the same price..

  3. Fermented soya bean (tempe) extracts reduce adhesion of enterotoxigenic Escherichia coli to intestinal epithelial cells.

    Roubos-van den Hil, P J; Nout, M J R; Beumer, R R; van der Meulen, J; Zwietering, M H


    This study aimed to investigate the effect of processed soya bean, during the successive stages of tempe fermentation and different fermentation times, on adhesion of enterotoxigenic Escherichia coli (ETEC) K88 to intestinal brush border cells as well as Caco-2 intestinal epithelial cells; and to clarify the mechanism of action. Tempe was prepared at controlled laboratory scale using Rhizopus microsporus var. microsporus as the inoculum. Extracts of raw, soaked and cooked soya beans reduced ETEC adhesion to brush border cells by 40%. Tempe extracts reduced adhesion by 80% or more. ETEC adhesion to Caco-2 cells reduced by 50% in the presence of tempe extracts. ETEC K88 bacteria were found to interact with soya bean extracts, and this may contribute to the observed decrease of ETEC adhesion to intestinal epithelial cells. Fermented soya beans (tempe) reduce the adhesion of ETEC to intestinal epithelial cells of pig and human origin. This reduced adhesion is caused by an interaction between ETEC K88 bacteria and soya bean compounds. The results strengthen previous observations on the anti-diarrhoeal effect of tempe. This effect indicates that soya-derived compounds may reduce adhesion of ETEC to intestinal cells in pigs as well as in humans and prevent against diarrhoeal diseases.

  4. Performance of BAC process for treatment of micro-polluted water

    WANG Chen; MA Fang; SHAN Dan; YANG Ji-xian; Chang Chein-chi


    Biological activated carbon (BAC) has been developed on the granular activated carbon by immobi-lization of selected and acclimated species of bacteria to treat the micro-polluted water. The BAC removal effi-ciencies for nitrobenzene, permanganate index, turbidity and ammonia were investigated. Effects of shock load-ing and SEM (Scanning Electron Microscope) observation on BAC were studied. Baekwashing and its intensity of BAC were also discussed. The results showed that BAC took short time to start up and recover to the normal condition after shock loading. The shock loading studies showed that the removal efficiency of BAC was not completely inhibited even at high concentration of nitrobenzene. Backwashing performed once every 10- 20 d,or an average of 15 d. Backwashing intensity was 12-14 L/( s·m2) with air and 3-4 L/( s·m2) with water.

  5. Solar energy system economic evaluation for Elcam-Tempe, Tempe, Arizona and Elcam-San Diego, San Diego, California


    The long term economic performance of the solar energy system at its installation site is analyzed and four additional locations selected to demonstrate the viability of the design over a broad range of environmental and economic conditions. The economic analysis of the solar energy systems that were installed at Tempe, Arizona and San Diego, California, is developed for these and four other sites typical of a wide range of environmental and economic conditions in the continental United States. This analysis is accomplished based on the technical and economic models in the f Chart design procedure with inputs based on the characteristics of the installed system and local conditions. The results are expressed in terms of the economic parameters of present worth of system cost over a projected twenty year life: life cycle savings; year of positive savings; and year of payback for the optimized solar energy system at each of the analysis sites. The sensitivity of the economic evaluation to uncertainites in constituent system and economic variables is also investigated. The results demonstrate that the solar energy system is economically viable at all of the sites for which the analysis was conducted.

  6. NetPhosBac - A predictor for Ser/Thr phosphorylation sites in bacterial proteins

    Miller, Martin Lee; Soufi, Boumediene; Jers, Carsten;


    predictors on bacterial systems. We used these large bacterial datasets and neural network algorithms to create the first bacteria-specific protein phosphorylation predictor: NetPhosBac. With respect to predicting bacterial phosphorylation sites, NetPhosBac significantly outperformed all benchmark predictors....... Moreover, NetPhosBac predictions of phosphorylation sites in E. coli proteins were experimentally verified on protein and site-specific levels. In conclusion, NetPhosBac clearly illustrates the advantage of taxa-specific predictors and we hope it will provide a useful asset to the microbiological community....

  7. A Blumeria graminis f.sp. hordei BAC library - contig building and microsynteny studies

    Pedersen, C.; Wu, B.; Giese, H.


    A bacterial artificial chromosome (BAC) library of Blumeria graminis f.sp. hordei, containing 12,000 clones with an average insert size of 41 kb, was constructed. The library represents about three genome equivalents and BAC-end sequencing showed a high content of repetitive sequences, making...... contigs, at or close to avirulence loci, were constructed. Single nucleotide polymorphism (SNP) markers were developed from BAC-end sequences to link the contigs to the genetic maps. Two other BAC contigs were used to study microsynteny between B. graminis and two other ascomycetes, Neurospora crassa...

  8. FPGA based implementation of hardware diagnostic layer for local trigger of BAC calorimeter for ZEUS detector

    Pozniak, Krzysztof T.


    The paper describes design and construction of hardware diagnostics layer dedicated to the local trigger of the Backing Calorimeter (BAC). The BAC is a part of the ZEUS experiment in DESY, Hamburg. A general characteristic of the hardware of BAC trigger was presented. The design of hardware diagnostic and calibration sub-systems for BAC trigger bases on the continuous monitoring of consecutive electronic and photonic blocks. The monitoring process is performed via the specialized tests. The standardized diagnostic components were realized in the algorithmic and parameterized description in AHDL. There were presented the implementation results in ALTERA ACEX chips.

  9. Safety and effectiveness of MF-59 adjuvanted influenza vaccines in children and adults.

    Black, Steven


    The squalene oil-in-water emulsion MF-59 adjuvant was developed initially to enhance the immunogenicity of influenza vaccines in populations such as children and adults with known suboptimal response. Developed in the 1990s, it was initially licensed in Europe for use in seasonal influenza vaccine in the elderly. Since that time, both Avian and p2009H1N1 vaccines have also been developed. Overall, more than 30,000 individuals have participated in clinical trials of MF-59 adjuvanted vaccine and more than 160 million doses of licensed vaccine have been administered. Safety and effectiveness data from clinical trials and observation studies attest to the safety of MF-59 and to its ability to enhance the effectiveness of influenza vaccines in children and the elderly.

  10. Au fil du temps (1976 ou la loi du seuil

    Isabelle Singer


    Full Text Available Ayant choisi de vivre dans un camion, les héros d’Au fil du temps (film de Wim Wenders de 1976 font du seuil une expérience particulière. Celle de la rupture avec toute idée de foyer et celle du refus d’appartenance à la terre natale, cette terre allemande traversée par une frontière le long de laquelle ils vont voyager, et qui les renvoie à chaque instant aux traumatismes de l’Histoire. Sur le pare-brise du camion, l’extérieur (campagnes indifférenciées, villes à l’abandon… et l’intérieur se superposent. Au fil du temps questionne le paysage : il s’agit d’en décoller un à un les mythes qui le recouvrent. L’image alors n’est plus surface mais volume à traverser, à lacérer et découvrir ce qui est tissé dans le paysage. La démarche de Wenders est alors proche de celle d’un de ses contemporains : Anselm Kiefer. Le paysage allemand provoque le rejet parce qu’il y a là toujours plus que le visible : des strates et des strates de culpabilité que le mythe - et c’est sa fonction - a recouvert. Et qu’il s’agira ici, de soulever. Le choix du nomadisme, c’est celui d’un état de l’humanité antérieur à l’idée de patrie. Et c’est aussi celui de la solitude, comme prix à payer à ce refus d’appartenance et à cette mise à jour des mythes. L’appartenance à la terre allemande et à son Histoire est profondément problématique parce que les pères sont fondamentalement coupables. On se reconnaîtra alors des pères de substitution : des pères de cinéma (Nicholas Ray ou Fritz Lang. Et l’on substituera l’Histoire du cinéma à l’Histoire. Bruno est réparateur ambulant de projecteurs et Au fil du temps dressera, au gré de ses pérégrinations, un état des lieux du cinéma allemand des années soixante-dix : déliquescent, colonisé par les images hollywoodiennes. Il faut que cela change : état du cinéma ; état des protagonistes solitaires en quête d’une identit

  11. Mirada al espacio interior en Temps d’una espera de Carme Riera / Examining Interior Space in Carme Riera’s Temps d’una espera

    Magdalena Coll Carbonell


    Full Text Available Resumen: Carme Riera, en Temps d'una espera, elabora un diálogo con el feto que ya ocupa un espacio en su cuerpo. La narración es una creación dual, simultáneamente se crean los dos, el nuevo ser y el texto. Este trabajo reflexiona sobre el espacio corporal perteneciente exclusivamente a la mujer y el espacio textual. El útero es textualizado y contextualizado en Temps d'una espera en forma de diario epistolar, en relación al tiempo de ocupación limitado. Reivindicar la maternidad como espacio creativo y vía de liberación para la mujer, este es el objetivo de este análisis.Summary: In “Temps d’una espera” Carme Riera composes a dialogue with the fetus that inhabits a space within her body. The narrative describes a dual creation, that of the new being, and of the text itself. This work reflects upon both textual space and the space within their bodies that is the exclusive property of women. In Temps d’una espera the uterus is textualized and contextualized in the form of an epistolary diary, in relation to the limited term of fetal occupation. Riera’s reinvocation of motherhood as a creative space and the road to liberation for women is the objective of this analysis.

  12. Mineral classification map using MF and SAM techniques: A case study in the Nohwa Island, Korea

    Son, Young-Sun; Yoon, Wang-Jung [Department of Energy and Resources Engineering, Chonnam National University, Gwangju 500-757 (Korea, Republic of)


    The purpose of this study is to map pyprophyllite distribution at surface of the Nohwa deposit, Korea by using Advanced Spaceborne Thermal Emission and Reflectance Radiometer (ASTER) data. For this, combined Spectral Angle Mapper (SAM), and Matched Filtering (MF) technique based on mathematical algorithm was applied. The regional distribution of high-grade and low-grade pyrophyllite in the Nohwa deposit area could be differentiated by this method. The results of this study show that ASTER data analysis using combination of SAM and MF techniques will assist in exploration of pyrophyllite at the exposed surface.

  13. 基于XML/BAC net的家庭网关实现%Implementation of Home Gateway Based on XML/BAC net



    设计并实现了一个基于XML/BAC net的家庭网关.该网关中信息采用XML文档存储,信息处理采用XML技术,通信平台为BAC net协议栈,在网络内部传输的为符合BAC net服务的报文.该系统具有自动维护、安全、实时、设备远程控制与信息管理等功能.

  14. L’essai littéraire, devant le temps

    Marielle Macé


    Full Text Available Le style de vérité accessible à l’essai est perceptible dans son mode de circulation, les souvenirs que l’on en garde, la façon dont on le résume, bref, l’usage que l’on en fait. Ce mémorable de l’essai tient à une pratique généralisée de la citation ; les essayistes partent de formes « citables », comme d’autant de pensées héritées et de savoirs doxaux ou paradoxaux qu’ils exploitent, développent ou fragilisent ; et ils en produisent à leur tour, offrant non pas des modèles applicables mais des cas remobilisables, des pensées désormais disponibles. Cette disponibilité identifie une pratique intellectuelle, les objets qu’elle fait naître (cette forme sensible que prennent dans un essai les opérations de l’esprit, un rythme propre à toute individualité pensante, bref une façon qu’a la prose d’idées de se situer devant le temps. Elle explique aussi la colère suscitée dans le monde du savoir contemporain par un genre profondément temporel, c’est-à-dire rythmé, situé, mais aussi précaire et soupçonnable à cet égard d’anachronisme.Lo stile di verità accessibile al saggio è percettibile nel modo in cui il testo circola, nei ricordi che ne abbiamo, nella maniera in cui ne facciamo riassunto, cioè nell’uso che possiamo averne. Questo aspetto “memorabile” del saggio è legato ad una prattica generalizzata della citazione. I saggisti partono di forme “citabili”, pensieri ereditati, saperi comuni o paradossali che loro mettono a prova, sviluppano, o fragilizzano; e ne producono a sua volta, non per offrire modelli da applicare, ma casi da mobilizzare, pensieri ormai disponibili. Questà disponibilità definisce una pratica intellettuale, gli oggetti che essa fa nascere (questa forma sensibile che prendono nel saggio le operazioni mentali, un ritmo legato ad ogni individualità nell’atto di pensare, un modo di porsi davanti al tempo. Spiega anche l’irritazione suscitata nel


    Dadi Hidayat Maskar


    Full Text Available ABSTRACTThis study was conducted to evaluate the effect of tempe that were made from Genetically Modified (GM and non-GM soybean on protein quality, malondialdehide (MDA levels, intracellular antioxidant superoxide dismutase (SOD activity in the liver and kidneys, as well as spermatozoa profile of experimental rats. Fourty five Sprague Dawley rats divided into eight treatment grups and one control, fed with tempe and soybean from GM and non-GM at 10% and 20% concentrations for 90 days. The results showed that there was no significant difference in term of protein quality, tempe made from GM soybean is substantially equivalent with tempe made from non-GM soybean. Results showed that group which was given ration of 10% protein from conventional soybean had lower liver and kidney MDA levels as compared to GM tempe 10% and 20% groups, but was not significant compared to conventional soybean 20% and casein 10% groups. While the value of liver and kidney SOD activity were not significantly different (p>0.05 between the groups of rats. There was no significant differences among the spermatozoa profiles treatment groups and control and they were within normal condition. Results of protein quality, MDA, SOD, and spermatozoa profile showed that tempe made from GM soybean was substantially equivalent with the non-GM soybean.Keywords: GM soybean, MDA, non-GM tempe, SOD, spermatozoa profileABSTRAKTujuan penelitian ini adalah untuk mengevaluasi pengaruh tempe Pangan Rekayasa Genetik (PRG dan non-PRG meliputi kualitas protein, kadar malondialdehida (MDA hati dan ginjal, aktivitas superoksida dismutase (SOD hati dan ginjal, dan profil spermatozoa pada tikus percobaan. Sebanyak 45 tikus terbagi ke dalam delapan perlakuan dan satu kontrol yang diberikan perlakuan dengan ransum tempe dan kedelai, baik PRG maupun non-PRG, dengan konsentrasi 10% dan 20% selama 90 hari. Hasil percobaan menunjukkan bahwa tidak ada perbedaan yang signifikan dalam kualitas protein

  16. Characteristics Of Phytases From Soybeans And Microorganisms Involved In The Tempe Production

    K A Buckle2


    Full Text Available Tempe was prepared from Forest variety of soybeans inoculated with pure culture of the mould Rhizopus oligosporus strain CT11K2. Partially purified phytases from soybeans, mould of the R. oligosporus strain CT11K2, yeasts (Endomycopsis burtonii, Candida diddensiae and Candida tropicalis and bacteria (Streptococcus faecium and Streptococcus dysgalactiae involved during tempe production were prepared according to procedure developed by Sutardi (1988. The crude phytases were characterized and phytic acid, inorganic and total phosphorous content of soybeans, intermediate products and tempe, were also determined.Results show that phytases, produced by microorganisms involved in tempe production, and by endogenous soybean phytase, had significantly different characteristics especially on optimum pH, temperature and substrate, Km and Vmax values, inactivation and activation energy and also temperature coefficient. All phytases contribute to the reduction in phytic acid content; and mould phytase, especially the extra-cellular enzyme, and the endogenous soybean phytase, showed the dominant effect on phytic acid degradation compared with other microbial phytases and physical treatments such as soaking, boiling and steaming.Phytic acid content of soybeans was reduced by more than 50% from about 10.4 to about 4.9 - 5.0 mg/g (DWB in fresh tempe (after 40 h fermentation at 30oC

  17. The Influence of Brightness on Functional Assessment by mfERG

    Christiansen, A T; Kiilgaard, J F; Smith, M


    To determine the effect of membrane brightness on multifocal electroretinograms (mfERGs), we implanted poly lactic-co-glycolic acid (PLGA) membranes in the subretinal space of 11 porcine eyes. We compared membranes with their native shiny white color with membranes that were stained with a blue dye...

  18. IL-15 and IL-17F are differentially regulated and expressed in mycosis fungoides (MF)

    Willerslev-Olsen, Andreas; Litvinov, Ivan V; Fredholm, Simon M


    Skin lesions from mycosis fungoides (MF) patients display an increased expression of interleukin-15 (IL-15), IL-17F, and other cytokines implicated in inflammation and malignant cell proliferation in cutaneous T-cell lymphoma (CTCL). In the leukemic variant of CTCL, Sézary syndrome (SS), IL-2...... and IL-15 trigger activation of the Jak-3/STAT3 pathway and transcription of IL17A gene, whereas it is unknown what causes IL-15 expression, Jak3/STAT3 activation, and production of IL-17F in MF. Here, we studied the expression and regulation of IL-15 and its relation to IL-17F in MF cell lines and skin......-malignant MF T cells, whereas the spontaneous STAT3 activation and IL-17F expression in malignant T cells is not inhibited; (3) patients display heterogeneous IL-15/IL-17F mRNA expression patterns in skin lesions; and (4) IL-15 expression (in contrast to IL-17F) is not associated with progressive disease...

  19. Functional recovery after experimental RPE debridement, mfERG studies in a porcine model.

    Sørensen, Nina Buus; Lassota, Nathan; Kyhn, Maria Voss; Prause, Jan Ulrik; Qvortrup, Klaus; la Cour, Morten; Kiilgaard, Jens


    The correlation between histologically identified regeneration of retinal pigment epithelium (RPE) and functional outcome measured by multifocal electroretinography (mfERG) following surgical debridement is examined in a porcine model. In humans, visual acuity is reduced in diseases with RPE loss such as RPE tears and geographic atrophy. Hypopigmented RPE is known to cover the lesion after RPE debridement in the pig, but it is unclear whether this leads to a return of photoreceptor function. RPE debridement was performed in ten pigs by vitrectomy and retinotomy, and by brushing the Bruch's membrane with a silicone catheter. Immediately following surgery (baseline) and after 2 and 6 weeks respectively, the animals were examined by mfERG, fundus photographs (FPs), fluorescein angiograms (FAs), and histopathology. The mfERG P1 amplitude was decreased 2 weeks (T₂) after surgery; it returned to baseline 6 weeks (T₆) after surgery. FPs, FAs, and histology showed partial repopulation of Bruch's membrane by hypopigmented RPE cells and atrophied outer segments at T₂. At T₆, normally pigmented RPE cells were identified, and the photoreceptor layer was restored. This is the first study to show that the histological regeneration of hypopigmented RPE correlates to a return of the retinal function, measured by mfERG.

  20. On Reduced Amalgamated Free Products of C*-algebras and the MF-Property

    Seebach, Jonas A.

    We establish an isomorphism of the group von Neumann algebra of an amalgamated free product of countable Abelian discrete groups. This result is then used to give some new examples of reduced group $ C^* $-algebras which are MF. Finally, we give a characterization of the amalgamated free products...

  1. Visual evoked potential (VEP) and multifocal electroretinogram (mfERG) in ocular syphilitic posterior segment inflammation.

    Alexander, Philip; Wen, Yaqin; Baxter, Julia M; Tint, Naing L; Browning, Andrew C; Amoaku, Winfried M


    The aim of this study is to correlate multifocal electroretinogram (mfERG) and visual evoked potential (VEP) changes with visual acuity and clinical features in patients with posterior segment inflammation secondary to syphilis. A retrospective interventional case series of 4 patients with visual loss secondary to syphilitic uveitis is reported. The mfERG (P1) showed diminished amplitudes and prolonged latency in 7 affected eyes. Visual acuity rapidly improved 2 weeks after initiation of therapy. OCT demonstrated anatomical recovery at 1 month. In three patients, visual acuity was restored to 6/6 at 6-9 months but mfERG responses remained significantly reduced and delayed for 12-15 months before recovery to normal levels. One patient developed a retinal detachment, but achieved 6/9 vision at 30 months. VEP changes, interpreted in combination with mfERG responses, showed evidence of optic nerve involvement in 6 eyes. Ocular findings, including posterior placoid chorioretinitis, are important diagnostic features of secondary and tertiary syphilis. Visual acuity and clinical recovery occur early with appropriate diagnosis and treatment, and precede full electrophysiological recovery of the outer retina-RPE complex. Ophthalmologists have the opportunity to play a key role in undetected or missed diagnoses of syphilis, and with appropriate treatment the visual prognosis is excellent.

  2. Validation of the German version of the brief assessment of cognition in Schizophrenia (BACS) - preliminary results.

    Sachs, G; Winklbaur, B; Jagsch, R; Keefe, R S E


    The German version of the BACS showed high test-retest reliability. Sensitivity and specificity scores demonstrated good ability to differentiate between patients and controls. The study suggests that the German Version of the BACS is a useful scale to evaluate cognitive functioning.

  3. A general method to modify BACs to generate large recombinant DNA fragments.

    Shen, Wei; Huang, Yue; Tang, Yi; Liu, De-Pei; Liang, Chih-Chuan


    Bacterial artificial chromosome (BAC) has the capacity to clone DNA fragments in excess of 300 kb. It also has the considerable advantages of stable propagation and ease of purification. These features make BAC suitable in genetic research, such as library construction, transgenic mice production, and gene targeting constructs. Homologous recombination in Escherichia coli, a process named recombineering, has made the modification of BACs easy and reliable. We report here a modified recombineering method that can efficiently mediate the fusion of large DNA fragments from two or more different BACs. With the introduction of kanamycin-resistant gene and proposed rare-cutting restriction endonuclease (RCRE) sites into two BACs, a 82.6-kb DNA fragment containing the inverted human alpha-globin genes (theta, alpha1, alpha2, and zeta) from BAC191K2 and the locus control region (LCR) of human beta-globin gene locus (from the BAC186D7) was reconstructed. This approach for combining different BAC DNA fragments should facilitate many kinds of genomic experiments.

  4. Protective efficacy of a recombinant BAC clone of Marek's disease virus containing REV-LTR

    Insertion of reticuloendotheliosis virus (REV) long-terminal repeat (LTR) into a bacterial artificial chromosome (BAC) clone of a very virulent strain of Marek’s disease (MD) virus (MDV), Md5 (Kim et al, 2011) rendered the resultant recombinant virus termed rMd5 REV-LTR BAC fully attenuated at passa...

  5. Recombineering strategies for developing next generation BAC transgenic tools for optogenetics and beyond

    Jonathan T Ting


    Full Text Available The development and application of diverse BAC transgenic rodent lines has enabled rapid progress for precise molecular targeting of genetically-defined cell types in the mammalian central nervous system. These transgenic tools have played a central role in the optogenetic revolution in neuroscience. Indeed, an overwhelming proportion of studies in this field have made use of BAC transgenic cre driver lines to achieve targeted expression of optogenetic probes in the brain. In addition, several BAC transgenic mouse lines have been established for direct cell-type specific expression of Channelrhodopsin-2 (ChR2. While the benefits of these new tools largely outweigh any accompanying challenges, many available BAC transgenic lines may suffer from confounds due in part to increased gene dosage of one or more ‘extra’ genes contained within the large BAC DNA sequences. Here we discuss this under-appreciated issue and propose strategies for developing the next generation of BAC transgenic lines that are devoid of extra genes. Furthermore, we provide evidence that these strategies are simple, reproducible, and do not disrupt the intended cell-type specific transgene expression patterns for several distinct BAC clones. These strategies may be widely implemented for improved BAC transgenesis across diverse disciplines.

  6. A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin.

    Kim, Changsoo; Lee, Tae-Ho; Compton, Rosana O; Robertson, Jon S; Pierce, Gary J; Paterson, Andrew H


    BAC-end sequences (BESs) of hybrid sugarcane cultivar R570 are presented. A total of 66,990 informative BESs were obtained from 43,874 BAC clones. Similarity search using a variety of public databases revealed that 13.5 and 42.8 % of BESs match known gene-coding and repeat regions, respectively. That 11.7 % of BESs are still unmatched to any nucleotide sequences in the current public databases despite the fact that a close relative, sorghum, is fully sequenced, indicates that there may be many sugarcane-specific or lineage-specific sequences. We found 1,742 simple sequence repeat motifs in 1,585 BESs, spanning 27,383 bp in length. As simple sequence repeat markers derived from BESs have some advantages over randomly generated markers, these may be particularly useful for comparing BAC-based physical maps with genetic maps. BES and overgo hybridization information was used for anchoring sugarcane BAC clones to the sorghum genome sequence. While sorghum and sugarcane have extensive similarity in terms of genomic structure, only 2,789 BACs (6.4 %) could be confidently anchored to the sorghum genome at the stringent threshold of having both-end information (BESs or overgos) within 300 Kb. This relatively low rate of anchoring may have been caused in part by small- or large-scale genomic rearrangements in the Saccharum genus after two rounds of whole genome duplication since its divergence from the sorghum lineage about 7.8 million years ago. Limiting consideration to only low-copy matches, 1,245 BACs were placed to 1,503 locations, covering ~198 Mb of the sorghum genome or about 78 % of the estimated 252 Mb of euchromatin. BESs and their analyses presented here may provide an early profile of the sugarcane genome as well as a basis for BAC-by-BAC sequencing of much of the basic gene set of sugarcane.

  7. An alternative explanation of PMSE-like scatter in MF radar data

    G. O. L. Jones


    Full Text Available There have been reports in the literature that spaced-antenna MF radars may provide a source of data on Polar Mesospheric Summer Echoes (PMSE. Even though the expected scatter from PMSE at MF frequencies is very much weaker than at VHF, the wide distribution of sites and long duration of data sets for MF radar systems could provide valuable information about the occurrence of PMSE. This paper tests whether there is any evidence of PMSE in the profiles derived using the MF radar at Rothera, Antarctica, one of the few such radars at high southern latitudes. Over a year of data during 1997/1998 has been analysed for the occurrence of persistent features around midday in the altitude range 60-95km. Criteria were chosen to test the likelihood that some of the narrow peaks in the power profiles were manifestations of electron density structures associated with PMSE. Although a small number of persistent features were seen at altitudes of 80-85km that are typically associated with PMSE, there was no seasonality in their occurrence. A detailed analysis of specific days showed that two peaks were often seen with altitude separations consistent with the vertical wavelength of the diurnal tide. Persistent features were also detected at altitudes of 70km and 90km during the winter months, thus showing a quite different seasonality to that of PMSE. An estimate of the turbulence caused by the breaking of gravity waves that have propagated up from the lower atmosphere shows that at Rothera significant energy is deposited near 80km during summer, and near 70 and 90km during winter. This seasonal variability is driven by the screening effect of stratospheric winds, and it appears that breaking gravity wave dynamics, rather than PMSE phenomena, can explain many of the localised altitude features in the MF radar data.

  8. Analysis and location of a rice BAC clone containing telomeric DNA sequences

    翟文学; 陈浩; 颜辉煌; 严长杰; 王国梁; 朱立煌


    BAC2, a rice BAC clone containing (TTTAGGG)n homologous sequences, was analyzed by Southern hybridization and DNA sequencing of its subclones. It was disclosed that there were many tandem repeated satellite DNA sequences, called TA352, as well as simple tandem repeats consisting of TTTAGGG or its variant within the BAC2 insert. A 0. 8 kb (TTTAGGG) n-containing fragment in BAC2 was mapped in the telomere regions of at least 5 pairs of rice chromosomes by using fluorescence in situ hybridization (FISH). By RFLP analysis of low copy sequences the BAC2 clone was localized in one terminal region of chromosome 6. All the results strongly suggest that the telomeric DNA sequences of rice are TTTAGGG or its variant, and the linked satellite DNA TA352 sequences belong to telomere-associated sequences.

  9. Preparation of high molecular weight gDNA and bacterial artificial chromosome (BAC) libraries in plants.

    Biradar, Siddanagouda S; Nie, Xiaojun; Feng, Kewei; Weining, Song


    Bacterial artificial chromosome (BAC) libraries are extremely valuable large-insert DNA libraries for physical mapping, positional cloning, comparative genomic analysis, complete genome sequencing, and evolutionary studies. Due to their stability and relative simplicity BAC libraries are most preferred over other approaches for cloning large genomic DNA fragments for large-insert libraries. Isolation of intact high molecular weight (HMW) DNA is a critical step underlying the success of large-insert genomic DNA library construction. It requires the isolation of purified nuclei, embedding them into LMP agarose plugs, restriction digestion of the plugs, and quite often size selection using PFGE and electro-elution of insert DNA. The construction of BAC libraries is complex and challenging for most molecular laboratories. To facilitate the construction of BAC libraries, we present a step-by-step protocol for isolation of HMW DNA and construction of plant BAC libraries.

  10. Technological exploration of BAC-FISH on mitotic chromosomes of maize

    Yongsheng TAO; Zuxin ZHANG; Yonglin CHEN; Lijia LI; Yonglian ZHENG


    The rice BAC-DNA was used as probes and fluorescence in situ hybridization (FISH) was applied to the interphase and metaphase mitotic chromosomes of maize. To optimize the BAC-FISH technique, we respect-ively assayed the effect of several factors, including maize or rice genomic Cot DNA used as blocking reagent of DNA, washing temperatures and FAD concentration in the washing buffer and in the hybrid solution. The results show that Cot DNA of maize genome blocked the repet-itive sequence of the rice BAC-DNA when the Cot value was below 50. Meanwhile, it was necessary to adjust the Cot value according to the different probes and their ratios. Decreasing the concentration of FAD in the hybridization mixtures, adjusting the washing rate after hybridization, and most especially, blocking the rice-specific repetitive sequences of BAC-DNA could improve the positive signals of BAC-FISH.

  11. [Three-dimensional PCR-based screening of Chinese fine wool merino sheep BAC library].

    Wu, Xindong; Chen, Fang; Li, Xin; Zou, Yihui; Qiu, Wei; Gao, Jianfeng


    For rapid screening, we constructed two levels pools (primary and secondary pools) of the bacterial artificial chromosome (BAC) library of Chinese fine wool merino sheep. The primary pools were based on the individual 384-well microtiter plate and were prepared with a three-dimensional pooling scheme. Three dimension (plate, row and column) pools were made for each. The secondary pools were based on the entire BAC library. We developed a PCR based strategy to identify positive BACs from sheep BAC library. First, we analyzed secondary pools DNAs, according to the result, we analyzed correlative primary pools. It was one-step screening (66 PCR reactions) that we could screen a single positive clone from 74 000 BACs by our method, or three-step screening (less than 100 PCR reactions) could screen more clones. By one-step screening (66 PCR reactions), we screened successfully a positive clone 373D13 with polymorphism marker BF94-1.

  12. Construction of BIBAC and BAC libraries from a variety of organisms for advanced genomics research.

    Zhang, Hong-Bin; Scheuring, Chantel F; Zhang, Meiping; Zhang, Yang; Wu, Cheng-Cang; Dong, Jennifer J; Li, Yaning


    Large-insert BAC (bacterial artificial chromosome) and BIBAC (binary BAC) libraries are essential for modern genomics research for all organisms. We helped pioneer the BAC and BIBAC technologies, and by using them we have constructed hundreds of BAC and BIBAC libraries for different species of plants, animals, marine animals, insects, algae and microbes. These libraries have been used globally for different aspects of genomics research. Here we describe the procedure with the latest improvements that we have made and used for construction of BIBAC libraries. The procedure includes the preparation of BIBAC vectors, the preparation of clonable fragments of the desired size from the source DNA, the construction and transformation of BIBACs and, finally, the characterization and assembly of BIBAC libraries. We also specify the modifications necessary for construction of BAC libraries using the protocol. The entire protocol takes ∼7 d.


    Achmad Machin


    Full Text Available Penelitian bertujuan untuk mendeskripsikan perlunya pengembangan penyedap rasa alternatif berbahan hidrolisat tempe dan proses pembuatannya, menguji jenis asam amino, kadar protein dan uji organoleptik. Metode eksperimen digunakan pada penelitian ini. Pengujian jenis asam amino melalui teknik kromatografi, kadar protein terlarut melalui metode Biuret dan uji organoleptik produk dibandingkan penyedap rasa sintetis. Hasil yang didapatkan adalah pengembangan penyedap rasa hidrolisat tempe perlu dilakukan karena alasan dampak mengkonsumsi penyedap rasa sintetis, pengembangan teknologi, sumber penghasilan dan potensi penelitian. Proses pembuatannya melalui penambahan sari nanas pada tempe yang telah dikukus dan diblender dengan perbandingan tempe:air:sari nanas 1: 0,5:0,5. Pengovenan selama 2 jam pada suhu 55ºC, penambahan dektrin + NaCl (masing-masing sebanyak 0,5 gr/100 gr tempe, pengovenan kembali selama 2 jam pada suhu 55ºC. Perlakuan B2 (pengovenan pada suhu 55ºC selama 2 jam menghasilkan asam glutamat. Produk ini berpotensi membentuk monosodium glutamat dengan penambahan NaCl. Jumlah protein terlarut dipengaruhi oleh lama pengovenan dan suhu. Produk hidrolisat tempe sebagai penyedap rasa menghasilkan rerata kesukaan warna (3,3 = menarik, aroma (3,9 = sangat suka dan menghasilkan cita rasa sama jika ditambahakan sebanyak 2 kali dibandingkan penyedap rasa sintetis.This research was aimed to describe the need for the development of alternative flavor made from hydrolyzated tempe and its manufacturing process, to test the types of amino acid, to measure the protein levels and to test the favor organoleptically. This was an experimental study. The types of amino acid was tested using chromatographic technique, the level of soluble protein was tested using Biuret method and the products were compared organoleptically. The study showed that the development of hydrolyzated tempe flavoring needs to be performed by the reason of the impact of

  14. Molecular Cloning and Characterization of Pollen Development Related Gene RsMF2 from Raphanus sativus L.

    ZHANG Tao; CAO Jia-shu


    In the paper, the full length cDNA of RsMF2 gene, homologous with the BcMF2 gene encoding pollen-specific polygalacturonase of Chinese cabbage-pak-choi (Brassica campestris L. ssp. chinensis Makino) was cloned from Raphanus sativus L. cv. Yuanbai by PCR, with a pair of primer designed according to the coding sequence of BcMF2. The largest opening reading frame of RsMF2 gene is 1 266 bp in length and encodes a protein of 421 amino acids with a predicted molecular mass of 43.9 kDa. Sequence analysis revealed that it has three potential N-glycosylation sites and one polygalacturonase active position (RVTCGPGHGLSVGS). And the first 32 amino acids of the predicted RsMF2 protein form a N-terminal hydrophobic domain which displays the properties of a signal peptide. The predicted secondary structure composition for the protein has 6.9% helix, 42.0% sheet and 51.1% loop. Four domains which are highly conserved in the whole plant and fungal PGs is present in RsMF2. Phylogenetic analysis showed that RsMF2 falls into the category of clade-C, which includes PGs related to pollen. These results indicate that RsMF2 may act as polygalacturonase related to pollen development.

  15. Gaussian wavelet transform and classifier to reliably estimate latency of multifocal visual evoked potentials (mfVEP).

    Thie, Johnson; Sriram, Prema; Klistorner, Alexander; Graham, Stuart L


    This paper describes a method to reliably estimate latency of multifocal visual evoked potential (mfVEP) and a classifier to automatically separate reliable mfVEP traces from noisy traces. We also investigated which mfVEP peaks have reproducible latency across recording sessions. The proposed method performs cross-correlation between mfVEP traces and second order Gaussian wavelet kernels and measures the timing of the resulting peaks. These peak times offset by the wavelet kernel's peak time represents the mfVEP latency. The classifier algorithm performs an exhaustive series of leave-one-out classifications to find the champion mfVEP features which are most frequently selected to infer reliable traces from noisy traces. Monopolar mfVEP recording was performed on 10 subjects using the Accumap1™ system. Pattern-reversal protocol was used with 24 sectors and eccentricity upto 33°. A bipolar channel was recorded at midline with electrodes placed above and below the inion. The largest mfVEP peak and the immediate peak prior had the smallest latency variability across recording sessions, about ±2ms. The optimal classifier selected three champion features, namely, signal-to-noise ratio, the signal's peak magnitude response from 5 to 15Hz and the peak-to-peak amplitude of the trace between 70 and 250 ms. The classifier algorithm can separate reliable and noisy traces with a high success rate, typically 93%. Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.

  16. PCR approach for rapid detection of Escherichia coli in tempe using a specific primer

    Siti Harnina Bintari


    Full Text Available Tempe known as a traditional fermented food originated from Indonesia. It has a unique flavour and texture. It also contains high protein and usually serves to substitute meat, fish, or egg as a complement to rice. The manufacture process of Tempe is quite complex and mostly, the traditional process has not employed the hygienic standard. In the process of Tempe making, there are two critical stages of the whole process; i.e. soaking of soybeans and solid state fermentation by Rhizopus sp. During the process, foodborne pathogen bacteria such as Escherichia coli could contaminate the product of Tempe. The bacterial contamination could be revealed through culture dependent methods which is costly, laborious, and time consuming. Therefore, the culture-independent method such as polymerase chain reaction using a specific primer could be applied to detect target microorganism to save time and labour. In this study, thirty-one Tempe samples collected from different manufacturers in Semarang, Central Java, Indonesia were analysed by PCR. In order to obtain the bacterial genomic DNA, a modified Chelex 100-Microwave method was employed. The results of DNA extraction showed that the method was an applicable method. It gave high quantity and quality of DNA; therefore, it could be applied in the PCR reaction. The DNA samples were employed in PCR for detection of Escherichia coli using Ecoli706F/R. It was found that 27 out of 31 samples were detected having Escherichia coli contamination showed by the presence of the amplified product size 706 bp. The application of this method could significantly reduce costs and time of analysis in the laboratory. Further response after E. coli were detected could be employed, including investigation of the critical factors in Tempe manufacturing process which allowed E. coli contamination.

  17. Nutritional and sensory evaluation of tempe-fortified maize-based weaning foods.

    Egounlety, M; Aworh, O C; Akingbala, J O; Houben, J H; Nago, M C


    Maize-based weaning foods prepared from whole maize meal or dehydrated fermented maize (ogi) flour fortified with soybean, cowpea or groundbean tempe, with or without the addition of melon seed flour were fed to 40 albino weanling rats. The nutrient quality of the weaning foods was monitored by the measurement of protein efficiency ratio (PER), net protein ratio (NPR), true digestibility (TD), biological value (BV) and net protein utilization (NPU). Amino acid composition and amino acid scores were determined. The weaning foods were also evaluated for sensory properties and acceptability by nursing mothers and their children. Protein efficiency ratio, net protein retention and net protein utilization of the fortified weaning foods were not significantly different (P > 0.05) when compared to casein diet (control). True digestibility of tempe-fortified maize-based weaning foods averaged 85.4 +/- 3.4% compared to 94.4%, for casein diet. Results from sensory analysis showed that relative to tempe-fortified maize-based weaning foods, most mothers preferred Cerelac, a commercial weaning food, and its porridge because of its vanillic flavour and sweet taste. Despite the low scores recorded for aroma and taste of tempe-fortified maize-based weaning foods, most mothers and their children found porridges prepared from these foods acceptable, with a preference for ogi fortified with cowpea tempe. Tempe-fortified maize-based weaning foods had high protein quality and can support the growth of infants in developing countries especially during the critical weaning period (6-12 months). They were comparable to Cerelac, a commercial baby food in colour and texture.

  18. Adaptation des Temps de Retournement et Silence des Agents (MICROFIP) sur ceux du MANAGER (FULLFIP)

    Brun, R


    Suite a des defauts de lecture entre le module FIPDIAG (MICROFIP) et le MANAGER (FULLFIP) lors de la qualification des reseaux du LHC, l'equipe du WorldFIP Support, avec l'aide d'Alstom, s'est rendu compte que le Temps de Retournement (Tr) des Agents MICROFIP ne devait pas etre minimal mais ajuste sur le mode operationnel du MANAGER (FULLFIP) qui est variable suivant la configuration du BA. Pour le Temps de silence (Ts) les precautions a prendre sont les memes.


    Samuel Samuel


    Full Text Available Penelitian tentang pertumbuhan, mortalitas dan laju eksploitasi terhadap ikan tawes dan nila di Danau Tempe dari bulan Februari sampai Nopember tahun 2010, bertujuan untuk mendapatkan informasi yang diperlukan dalam rangka pengelolaannya di Danau Tempe. Estimasi parameter pertumbuhan, mortalitas dan laju eksploitasi dihitung menggunakan program FISAT. Hasil Penelitian menunjukkan pertumbuhan ikan tawes dan nila di Danau Tempe termasuk rendah dibandingkan dengan pertumbuhan jenis ikan tawes dan nila di beberapa badan air lainnya di Indonesia. Parameter pertumbuhan Von Bertalanffy ikan tawes mempunyai panjang infinitif (L∞= 29,1 cm dengan laju pertumbuhan (K= 0,30/tahun dan laju eksploitasi (E= 0,46 sedikit dibawah nilai tangkap maksimum. Ikan nila mempunyai panjang infinitif  (L∞= 31,8 cm dengan laju pertumbuhan (K= 0,22/tahun dan laju eksploitasi (E sebesar 0,50, tepat pada nilai tangkap maksimum. Untuk pengelolaan dan pemanfaatan sumberdaya ikan di Danau Tempe agar tetap lestari perlu adanya pembatasan jumlah alat tangkap dan pengawasan terhadap aktivitas penangkapan di zona inti ketika air surut. Research on growth, mortality and exploitation rate of these two fish species in Lake Tempe was conducted from February to November 2010. The aim of the research was to obtain information for management of these two fish species in Lake Tempe. Estimation of growth, mortality and exploitation rate was calculated using FISAT program. The results showed that java barb had infinitive length (L∞ = 29.1 cm with a growth rate of 0.30/year and exploitation rate of 0.46, slightly below the optimum fishing value. Nile tilapia had infinitive length (L∞ = 31.8 cm with a growth rate of 0.22/year and exploitation rate of 0.50, same as the optimum fishing value. Growth rate of java barb and nile tilapia in Lake Tempe were lower compared with the growth of these two fish species in others water bodies in Indonesia. For management and utilization of fish

  20. Temporalitats digitals. Aproximaci?? a una teoria del temps cinem??tic en les obres audiovisuals interactives

    Sora, Carles


    Aquesta tesi presenta una aproximaci?? te??rica a l'estudi del temps cinem??tic en l'audiovisual interactiu, des de dues perspectives: la de l'estructuraci?? narrativa, els seus usos i tractament temporal; i la de la seva viv??ncia i percepci??. L'aven?? constant de les tecnologies de la informaci?? i les comunicacions ha fet variar la manera com hem concebut i hem fet ??s del temps, a trav??s de les imatges en moviment al llarg de la hist??ria. En els mitjans digitals es generen ara m??ltipl...

  1. Temps sociaux et temporalités urbaines dans la politique de la ville

    Monique Haicault


    Full Text Available À partir d’une réflexion sur les transformations accélérées du « temps social industriel » au sein des sociétés occidentales, on est amené à considérer comment de nouvelles qualités de temps débordant le cadre du travail, façonnent les espaces et les territoires et conduisent les politiques des villes à les prendre en compte pour améliorer la vie quotidienne des citoyens des deux sexes.

  2. Temps et espace de l'antiquité à nos jours

    Rovelli, Carlo


    Des visions du cosmos dans la Grèce ancienne aux théories récentes sur la gravité quantique, Carlo Rovelli explore les métamorphoses de la notion d'espace et de temps. Une approche lumineuse de l'histoire des sciences par le biais de ces "coordonnées fondamentales de notre description du monde". Au terme de ce voyage, qui fait la part belle aux recherches actuelles, se dessine un Univers fascinant fait de " grains d'espace", où le temps pourrait n'être qu'un effet de notre ignorance des lois du monde.

  3. Multifractal analysis on gold market with MF-DFA method%基于MF-DFA方法的黄金市场多重分形分析

    曹建军; 顾荣宝


    This paper analyzes the daily return series of Shanghai gold market and London gold market with multifractal and dispeling tendency fluctuation analysis (MF-DFA ) method. A conclusion is drawn that both of the two markets have multifractal characters. Meanwhile, the multifractal character of Shanghai gold market is more salient than the latter. The analysis provides a new method to realize and research the complex structure of gold markets.%运用多重分形消除趋势波动分析(MF-DFA)方法对上海黄金市场和伦敦黄金市场日收益率数据进行实证研究.分析结果表明:两个黄金市场均表现出多重分形特征,其中上海黄金市场的多重分形特征更为显著,风险性也相对较大.该分析结果为更好地认识和研究黄金市场的复杂结构,提供了新的思路.

  4. Compositional and Structural Versatility in an Unusual Family of anti-Perovskite Fluorides: [Cu(H2O)4]3[(MF6)(M'F6)].

    Felder, Justin B; Yeon, Jeongho; Smith, Mark D; Zur Loye, Hans-Conrad


    A series of six anti-perovskite fluorides of the type [Cu(H2O)4]3(M1-xM'xF6)2 (where M and M' = V, Cr, Mn, Fe as well as M = Fe and M' = V and Cr) was synthesized as high-quality single crystals via a mild hydrothermal route. These materials belong to a class of perovskite-based structures in which the anions and cations of the regular ABX3 perovskite structure have exchanged positions. Two complex anions, MF6(3-) and M'F6(3-), occupy the normal A and B cation positions, while three complex cations, [Cu(H2O)4](2+), occupy the normally anionic X positions. As in the ABX3 compositions, the A and B positions can be occupied by different complex anions, allowing for the preparation of a wide range of compositions. Magnetic property measurements were performed on all six phases, and complex magnetic behavior was observed at low temperatures in the Mn, Fe, and bimetallic Fe/V and Fe/Cr phases.

  5. L’iconostase de Rădeana-Bacău

    Marina Sabados


    Full Text Available L’analyse complexe (peinture et sculpture décorative, iconographie et style de l’iconostase de Rădeana, dans le département de Bacău, un ensemble presque inconnu, donation du voïvode Gheorghe Ştefan de 1658, relève sa place singulière dans l’histoire moldave du genre. Au sujet de la peinture, les conclusions mènent vers un atelier galicien, tandis que la sculpture décorative à la manière baroque s’avère précoce par rapport aux ensembles contemporains (ceux ruthènes y compris et pourrait représenter le modèle, en tant qu’architecture et ornementation, des iconostases moldaves du XVIIIe siècle.

  6. Markerless modification of trinucleotide repeat loci in BACs.

    Benzow, Kellie A; Koob, Michael D


    Transcription and splicing of human genes are regulated by nucleotide sequences encoded across large segments of our genome, and trinucleotide repeat expansion mutations can have both profound and subtle effects on these processes. In the course of our work to understand the impact of the Spinocerebellar Ataxia type 8 (SCA8) CTG repeat expansion on the transcription and splicing of the RNAs encoded near the SCA8 locus, we have developed a set of reagents and protocols for modifying large genomic BAC clones of this region. We describe the two-step procedure that allows us to precisely replace unexpanded trinucleotide repeats with expanded variants of these repeat sequences without leaving any exogenous sequences in the final constructs, and we discuss how this approach can be adapted to make other desired sequence changes to these genomic clones.

  7. Superconductivity in the Graphite Intercalation Compound BaC(6).

    Heguri, Satoshi; Kawade, Naoya; Fujisawa, Takumi; Yamaguchi, Akira; Sumiyama, Akihiko; Tanigaki, Katsumi; Kobayashi, Mototada


    Among many two-dimensional (2D) high T(C) superconductors, graphite intercalation compounds (GICs) are the most famous intercalation family, which are classified as typical electron-phonon mediated superconductors. We show unambiguous experimental facts that BaC(6), the superconductivity of which has been missing for many years so far among various alkaline earth metal (Ca, Sr, and Ba) intercalted GICs, exhibits superconductivity at T(C)=65  mK. By adding this finding as the additional experimental point, a complete figure displaying the relationship between T(C) and interlayer distance (d) for GICs is now provided, and their possible superconducting mechanisms raised so far are revisited. The present study settles a long-running debate between theories and experiments on the superconductivity in the first stage GICs.

  8. Direct Sensitivity Test of the MB/BacT System

    Barreto Angela Maria Werneck


    Full Text Available In order to evaluate the direct-method test of sensitivity to drugs used in the principal tuberculosis treatment regimes, in the Organon Teknika MB/BacT system, we tested 50 sputum samples positive to microscopy taken from patients with pulmonary tuberculosis and with clinical indications for an antibiogram, admitted sequentially for examination during the routine of the reference laboratory. The material was treated v/v with 23% trisodium phosphate solution, incubated for 24 h at 35°C, and neutralized v/v with 20% monosodium phosphate solution. The material was then centrifuged and the sediment inoculated into flasks containing Rifampin - 2 µg/ml, Isoniazid - 0.2 µg/ml, Pyrazinamide - 100 µg/ml, Ethambutol - 2.5 µg/ml, Ethionamide - 1.25 µg/ml, and Streptomycin - 2 µg/ml. The tests were evaluated using the indirect method in the BACTEC 460 TB (Becton Dickinson system as the gold standard. The results showed that the Rifampin test performed best, i.e., 100% sensitivity at 95% Confidence Interval (82.2-100 and 100% specificity at 95% Confidence Interval (84.5-100, followed by Isoniazid and Pyrazinamide. In this experiment, 92% of the materials showed a final reading in 30 days; this period represents the time for primary isolation as well as the results of the sensitivity profile, and is within Centers for Disease Control and Prevention recommendations regarding time for performance of the antibiogram. The inoculated flasks showed no contamination during the experiment. The MB/BacT is shown to be a reliable, rapid, fully automated nonradiometric system for the tuberculosis antibiogram.

  9. Characteristics of mesosphere echoes over Antarctica obtained using PANSY and MF radars

    Tsutsumi, Masaki; Nakamura, Takuji; Sato, Toru; Nishimura, Koji; Sato, Kaoru; Tomikawa, Yoshihiro; Kohma, Masashi


    In the polar region characteristic radar echoes are observed from the mesosphere by using a VHF system. The nature of the echoes is distinctively different between summer and winter and those echoes are called Polar Mesosphere Summer Echoes (PMSEs) and Polar Mesosphere Winter Echoes (PMWEs), respectively. Since the PMSEs are usually very strong and can be easily measured with a small radar system, their nature is relatively well understood. On the other hand PMWEs are much weaker and they are still only poorly understood. The PANSY radar (47MHz) at Syowa station (69S) is the only large aperture atmospheric radar in the Antarctic, and can continuously survey the dynamics of the middle atmosphere with high time and height resolutions [Sato et al., 2014]. Nishiyama et al [2014] reported the first study of PMWEs using PANSY radar and showed a seasonal and local time dependence of these echoes. An MF radar system (2.4MHz) is co-located at Syowa, and has been operating for mesosphere and lower thermosphere observations. Although the MF radar has only a much poorer height resolution and is incapable of vertical wind measurement, it can almost continuously measure mesosphere day and night. In this study the nature of the mesosphere echoes, mainly PMWEs, are being studied using the two radars based on the observation made in 2015. These radars are operated using largely different radio frequencies and can provide complementary information with each other such as wind velocities and also echo scattering mechanisms. Horizontal wind velocities have been compared between the two radars with a great care mostly in the MF radar winds in order to avoid possible biases inherent in the correlation analysis technique employed for the MF radar wind measurement. A careful analysis has shown that the horizontal wind velocities agree well between the two systems with a high correlation coefficient around 0.8 throughout the height region of 65-85km. Aspect sensitivities estimated using

  10. Effect of soybean processing on content and bioaccessibility of folate, vitamin B12 and isoflavones in tofu and tempe

    Mo, H.; Kariluoto, S.; Piironen, V.; Zhu, Y.; Sanders, M.G.; Vincken, J.P.; Wolkers-Rooijackers, J.C.M.; Nout, M.J.R.


    Purpose - To compare the content of bioaccessible folate, vitamin B12, and isoflavones in tofu and tempe, as influenced by soybean variety and food processing, particularly fermentation. Principal results - Raw soybeans contained 2207–2671 µg/kg (dry matter) folate, cooked tempe 1493–4143, and cooke

  11. Effect of soybean processing on content and bioaccessibility of folate, vitamin B12 and isoflavones in tofu and tempe

    Mo, H.; Kariluoto, S.; Piironen, V.; Zhu, Y.; Sanders, M.G.; Vincken, J.P.; Wolkers-Rooijackers, J.C.M.; Nout, M.J.R.


    Purpose - To compare the content of bioaccessible folate, vitamin B12, and isoflavones in tofu and tempe, as influenced by soybean variety and food processing, particularly fermentation. Principal results - Raw soybeans contained 2207–2671 µg/kg (dry matter) folate, cooked tempe 1493–4143, and cooke

  12. A Comparative BAC map for the gilthead sea bream (Sparus aurata L.).

    Kuhl, Heiner; Sarropoulou, Elena; Tine, Mbaye; Kotoulas, Georgios; Magoulas, Antonios; Reinhardt, Richard


    This study presents the first comparative BAC map of the gilthead sea bream (Sparus aurata), a highly valuated marine aquaculture fish species in the Mediterranean. High-throughput end sequencing of a BAC library yielded 92,468 reads (60.6  Mbp). Comparative mapping was achieved by anchoring BAC end sequences to the three-spined stickleback (Gasterosteus aculeatus) genome. BACs that were consistently ordered along the stickleback chromosomes accounted for 14,265 clones. A fraction of 5,249 BACs constituted a minimal tiling path that covers 73.5% of the stickleback chromosomes and 70.2% of the genes that have been annotated. The N50 size of 1,485 "BACtigs" consisting of redundant BACs is 337,253 bp. The largest BACtig covers 2.15 Mbp in the stickleback genome. According to the insert size distribution of mapped BACs the sea bream genome is 1.71-fold larger than the stickleback genome. These results represent a valuable tool to researchers in the field and may support future projects to elucidate the whole sea bream genome.

  13. Sensitivity and applicability of the Brazilian version of the Brief Assessment of Cognition in Schizophrenia (BACS

    João Vinícius Salgado

    Full Text Available Abstract Cognitive assessment in schizophrenia has traditionally used batteries that are long and complex or differ widely in their content. The Brief Assessment of Cognition in Schizophrenia (BACS has been developed to cover the main cognitive deficits of schizophrenia as well as to be easily and briefly administered, portable, sensitive and reliable. Objectives: To investigate the applicability and sensitivity of the Brazilian Version of the BACS (Brazilian-BACS. Methods: Performance of 20 stable patients with schizophrenia on the Brazilian-BACS was compared to 20 matched healthy controls. Results: Applying the Brazilian-BACS required 43.4±8.4 minutes for patients and 40.5±5.7 minutes for controls (p=0.17. All tests demonstrated significant differences between controls and patients (P<0.01. Pearson's correlation analysis and Cronbach's a evidenced a high internal consistency for patient performance. The cognitive deficit in the patients was approximately 1.5 standard deviations below controls. These results were consistent with those reported in the validation of the original version and in meta-analyses of similar studies. Conclusions: The Brazilian-BACS displayed good applicability and sensitivity in assessing the major cognitive constructs that are impaired in schizophrenia. Thus, the Brazilian-BACS seems to be a promising tool for assessing cognition in patients with schizophrenia in Brazil.

  14. A Comparative BAC Map for the Gilthead Sea Bream (Sparus aurata L.

    Heiner Kuhl


    Full Text Available This study presents the first comparative BAC map of the gilthead sea bream (Sparus aurata, a highly valuated marine aquaculture fish species in the Mediterranean. High-throughput end sequencing of a BAC library yielded 92,468 reads (60.6 Mbp. Comparative mapping was achieved by anchoring BAC end sequences to the three-spined stickleback (Gasterosteus aculeatus genome. BACs that were consistently ordered along the stickleback chromosomes accounted for 14,265 clones. A fraction of 5,249 BACs constituted a minimal tiling path that covers 73.5% of the stickleback chromosomes and 70.2% of the genes that have been annotated. The N50 size of 1,485 “BACtigs” consisting of redundant BACs is 337,253 bp. The largest BACtig covers 2.15 Mbp in the stickleback genome. According to the insert size distribution of mapped BACs the sea bream genome is 1.71-fold larger than the stickleback genome. These results represent a valuable tool to researchers in the field and may support future projects to elucidate the whole sea bream genome.

  15. Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome.

    Krzywinski, Martin; Wallis, John; Gösele, Claudia; Bosdet, Ian; Chiu, Readman; Graves, Tina; Hummel, Oliver; Layman, Dan; Mathewson, Carrie; Wye, Natasja; Zhu, Baoli; Albracht, Derek; Asano, Jennifer; Barber, Sarah; Brown-John, Mabel; Chan, Susanna; Chand, Steve; Cloutier, Alison; Davito, Jonathon; Fjell, Chris; Gaige, Tony; Ganten, Detlev; Girn, Noreen; Guggenheimer, Kurtis; Himmelbauer, Heinz; Kreitler, Thomas; Leach, Stephen; Lee, Darlene; Lehrach, Hans; Mayo, Michael; Mead, Kelly; Olson, Teika; Pandoh, Pawan; Prabhu, Anna-Liisa; Shin, Heesun; Tänzer, Simone; Thompson, Jason; Tsai, Miranda; Walker, Jason; Yang, George; Sekhon, Mandeep; Hillier, LaDeana; Zimdahl, Heike; Marziali, Andre; Osoegawa, Kazutoyo; Zhao, Shaying; Siddiqui, Asim; de Jong, Pieter J; Warren, Wes; Mardis, Elaine; McPherson, John D; Wilson, Richard; Hübner, Norbert; Jones, Steven; Marra, Marco; Schein, Jacqueline


    As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC library. These BAC clones provide approximately 13-fold redundant coverage of the genome and have been assembled into 376 fingerprint contigs. A yeast artificial chromosome (YAC) map was also constructed and aligned with the BAC map via fingerprinted BAC and P1 artificial chromosome clones (PACs) sharing interspersed repetitive sequence markers with the YAC-based physical map. We have annotated 95% of the fingerprint map clones in contigs with coordinates on the version 3.1 rat genome sequence assembly, using BAC-end sequences and in silico mapping methods. These coordinates have allowed anchoring 358 of the 376 fingerprint map contigs onto the sequence assembly. Of these, 324 contigs are anchored to rat genome sequences localized to chromosomes, and 34 contigs are anchored to unlocalized portions of the rat sequence assembly. The remaining 18 contigs, containing 54 clones, still require placement. The fingerprint map is a high-resolution integrative data resource that provides genome-ordered associations among BAC, YAC, and PAC clones and the assembled sequence of the rat genome.

  16. Conversion of BAC Clones into Binary BAC (BIBAC) Vectors and Their Delivery into Basidiomycete Fungal Cells Using Agrobacterium tumefaciens

    Ali, Shawkat


    The genetic transformation of certain organisms, required for gene function analysis or complementation, is often not very efficient, especially when dealing with large gene constructs or genomic fragments. We have adapted the natural DNA transfer mechanism from the soil pathogenic bacterium Agrobacterium tumefaciens, to deliver intact large DNA constructs to basidiomycete fungi of the genus Ustilago where they stably integrated into their genome. To this end, Bacterial Artificial Chromosome (BAC) clones containing large fungal genomic DNA fragments were converted via a Lambda phage-based recombineering step to Agrobacterium transfer-competent binary vectors (BIBACs) with a Ustilago-specific selection marker. The fungal genomic DNA fragment was subsequently successfully delivered as T-DNA through Agrobacterium-mediated transformation into Ustilago species where an intact copy stably integrated into the genome. By modifying the recombineering vector, this method can theoretically be adapted for many different fungi.

  17. Sixth generation lithospheric magnetic field model, MF6, from CHAMP satellite magnetic measurements

    Maus, S.; Fan, Y.; Manoj, C.; Rother, M.; Rauberg, J.; Stolle, C.; Luhr, H.


    The CHAMP satellite continues to provide highly accurate magnetic field measurements with decreasing orbital altitudes (<350km) at solar minimum conditions. A promising new CHAMP data product has become available, which provides the total field with one order of magnitude smaller noise amplitudes. The product is inferred from suitably merged Fluxgate and Overhauser magnetometer data. While the low-noise Fluxgate measurements are used in the short-period range (<900sec, or <6000km wavelength), we take advantage of the high stability provided by the Overhauser for the longer periods. The new data set is used for generating an improved lithospheric magnetic field model (MF6). Although MF6 is still in production at the time of writing this abstract, we anticipate significant benefits in terms of resolving small- scale low-amplitude crustal features from the new data. Further improvements include a new correction for steady ocean circulation and an expansion to higher spherical harmonic degrees of the model.

  18. Experimental study on an all-optical switching based on MF-NOLM

    SONG Xue-peng; REN Xiao-min; ZHANG Xia; YANG Guang-qiang; HUANG Yong-qing


    In this paper,the experiment on an all-optical switching is reported based on a microstructure fiber(MF)-nonlinear optical loop mirror(NOLM).In the experiment,a 25-meter-long MF(γ=36W-1km-1@1 550 nm) is used as a nonlinear medium of the nonlinear optical loop mirror and the input signal is generated by a 10 GHz tunable picosecond laser source,with a full-width at half-maximum (FWHM) of 2 ps and centered at 1 550 nm.With the increase of input power,a π nonlinear phase shift is obtained by a 40/60 coupler in the experiment,but the same result can not be found by a 48/52 coupler.Additionally,the switching devices can also be used as an all-optical regeneration.

  19. Toward an Integrated BAC Library Resource for Genome Sequencing and Analysis

    Simon, M. I.; Kim, U.-J.


    We developed a great deal of expertise in building large BAC libraries from a variety of DNA sources including humans, mice, corn, microorganisms, worms, and Arabidopsis. We greatly improved the technology for screening these libraries rapidly and for selecting appropriate BACs and mapping BACs to develop large overlapping contigs. We became involved in supplying BACs and BAC contigs to a variety of sequencing and mapping projects and we began to collaborate with Drs. Adams and Venter at TIGR and with Dr. Leroy Hood and his group at University of Washington to provide BACs for end sequencing and for mapping and sequencing of large fragments of chromosome 16. Together with Dr. Ian Dunham and his co-workers at the Sanger Center we completed the mapping and they completed the sequencing of the first human chromosome, chromosome 22. This was published in Nature in 1999 and our BAC contigs made a major contribution to this sequencing effort. Drs. Shizuya and Ding invented an automated highly accurate BAC mapping technique. We also developed long-term collaborations with Dr. Uli Weier at UCSF in the design of BAC probes for characterization of human tumors and specific chromosome deletions and breakpoints. Finally the contribution of our work to the human genome project has been recognized in the publication both by the international consortium and the NIH of a draft sequence of the human genome in Nature last year. Dr. Shizuya was acknowledged in the authorship of that landmark paper. Dr. Simon was also an author on the Venter/Adams Celera project sequencing the human genome that was published in Science last year.

  20. Perancangan Sistem Pengelolaan Limbah Cair Industri Tempe di Desa Bandungrejo –Kecamatan Mranggen – Kab. Demak

    Tri Joko


    Full Text Available ABSTRACT Background : Problems  which often appear in small industrial environment especially from the central industry of tempe is lack of awareness of society in management of the environment It is associated with the limited fund to build waste water facility and also its operating expenses. The Central Industry of tempe in Bandungrejo District of Mranggen at this time. The amount of  is 26 home industries of tempe product are marketed to the region of Demak and its surroundings, amount to and also to region part of east town of Semarang. For the efficacy of product of tempe,  waste also generate problem especially related to contamination of ground water, decrease quality of wells, dig water  as the source of clean. Method : To overcome the mentioned hence, it requires a cheap waste water treatment system design, easy to operate and also with  economized  energy. Result : As conclusion of this research is that source of waste water of tempe industry comes from washing process, poaching of seed process, soaking and resolving of soy husk and seed process, debit/capacities waste water of tempe mean equal to 1,27 m3/day/industry, waste water characteristic of tempe Industry  has the character of organic with comparison of BOD/COD = 0,4 - 0,5, the proposed of IPAL design is by using batch system through anaerobic system with usage of PVC pipe media of wasp den at biofilter process. Suggested from results of this research are the importance of giving knowledge to society of central industry of tempe about tere impacts  to the  environment by activity making of tempe and also the importance of forming and stabilization of organization management of industrial waste water so that reaching of continuity of operation and maintenance of WWTP (Waste Water Treatment Plan.   Key words : anaerobic biofilter, industrial  waste water of tempe

  1. Intertest variability of mfVEP amplitude: reducing its effect on the interpretation of sequential tests.

    Klistorner, A; Graham, S L


    The multi-focal visual evoked potential (mfVEP) has been recently introduced as an alternative to subjective perimetry in detecting visual field defects. This study examines the source of variability in the mfVEP amplitude, and determines the relationship of this variability to the strength of the signal itself across the visual field. It also investigates possible means to reduce the effects of this variability on between-test interpretation to allow for easier detection of progression. 85 normal subjects participated in the study. The mfVEP was recorded using Accumap (ObjectiVision Pty Ltd, Sydney, Australia). Each subject was tested twice with an interval between visits of 3-4 weeks. Comparison between tests was performed using coefficient of variability (CV). Variability was also analysed using scaling and clustering procedures. In the majority of the retinal areas CV fell within 15-20%. Variability increased with eccentricity, but there was no age dependency. There was a significant reduction of variability (by 15.8 +/- 6%, Student's t-test p<0.0001) when a scaling procedure was applied and this was consistent at all eccentricities. A clustering procedure reduced variability on average by a further 18.5 +/- 4.5% (Student's t-test p<0.0001). This result was also consistent at all eccentricities. Between test comparisons of raw mfVEP traces is limited by a variability of at least 15%. While this variability required the amplitude of the individual VEP signal to change by 30-40% in order to detect progression, scaling and clustering procedures were able to reduce the required change to 20-25%, thus making an interpretation of consecutive test results more clinically viable.

  2. Dichoptic suppression of mfVEP amplitude: effect of retinal eccentricity and simulated unilateral visual impairment.

    Leaney, John; Klistorner, Alexander; Arvind, Hemamalini; Graham, Stuart L


    To investigate the effect of retinal eccentricity on the phenomenon of dichoptic suppression of the mfVEP amplitude and to examine the relationship between the degree of simulated unilateral visual impairment and the possible release of dichoptic suppression in the contralateral eye. Eight subjects with corrected visual acuity (VAc) >6/6 and stereoacuity >60 sec arc underwent monocular and dichoptic pattern-pulse mfVEP. Dichoptic stimulation was repeated with refractively induced blur of one eye with +4-D and +6-D lenses above distance correction. Dichoptic recording resulted in significant reduction of averaged mfVEP amplitude (19.8% ± 4.9%, paired t-test, P = 0.00003). The magnitude of suppression, while statistically significant at all eccentricities, was significantly larger in the central part of the visual field and diminished toward the periphery. Refractive blur, used to simulate visual impairment produced variable degrees of amplitude reduction in the blurred eye and resulted in amplitude increases in the contralateral eye. There was a highly significant correlation between the magnitude of amplitude reduction in the blurred eye and increase in amplitude (i.e., release of dichoptic suppression) in the contralateral eye (r = 0.91, P < 0.0001). The study demonstrated that dichoptic stimulation results in eccentricity-dependent suppression of mfVEP amplitude. Factors affecting visual performance of one eye (monocular blur) promote the release of dichoptic suppression in the fellow (unaffected) eye. This phenomenon leads to an increase in intereye asymmetry and therefore may improve early detection of ocular diseases, especially monocular pathologic processes.

  3. Development and Evidence for Efficacy of CMV Glycoprotein B Vaccine with MF59 Adjuvant

    Pass, Robert F.


    A vaccine comprised of recombinant cytomegalovirus (CMV) envelope glycoprotein B (gB) with MF59 adjuvant developed in the 1990s recently was recently found to have efficacy for prevention of CMV infection in a phase 2 clinical trial in young mothers. This review briefly considers the rationale for gB as a vaccine antigen, the history of this CMV gB vaccine and the data supporting vaccine efficacy.

  4. Analysis of damage of superheaters from steel 12Kh1MF in operation

    Priymak, E. Yu.; Tryakina, N. Yu.; Gryzunov, V. I.; Sokolov, S. O.


    Main cases of damage of superheaters from steel 12Kh1MF due to disturbance of the process of production of the tubes and due to creep, thermal fatigue, and short-term superheating are considered. The methods of metallographic analysis and scanning electron microscopy are used to determine the special features of their microstructure and fracture surfaces. The results obtained are used to develop an algorithm for detecting the causes of damage in superheaters produced from heat-resistant pearlitic steels.

  5. Automatic epileptic seizure detection in EEGs using MF-DFA, SVM based on cloud computing.

    Zhang, Zhongnan; Wen, Tingxi; Huang, Wei; Wang, Meihong; Li, Chunfeng


    Epilepsy is a chronic disease with transient brain dysfunction that results from the sudden abnormal discharge of neurons in the brain. Since electroencephalogram (EEG) is a harmless and noninvasive detection method, it plays an important role in the detection of neurological diseases. However, the process of analyzing EEG to detect neurological diseases is often difficult because the brain electrical signals are random, non-stationary and nonlinear. In order to overcome such difficulty, this study aims to develop a new computer-aided scheme for automatic epileptic seizure detection in EEGs based on multi-fractal detrended fluctuation analysis (MF-DFA) and support vector machine (SVM). New scheme first extracts features from EEG by MF-DFA during the first stage. Then, the scheme applies a genetic algorithm (GA) to calculate parameters used in SVM and classify the training data according to the selected features using SVM. Finally, the trained SVM classifier is exploited to detect neurological diseases. The algorithm utilizes MLlib from library of SPARK and runs on cloud platform. Applying to a public dataset for experiment, the study results show that the new feature extraction method and scheme can detect signals with less features and the accuracy of the classification reached up to 99%. MF-DFA is a promising approach to extract features for analyzing EEG, because of its simple algorithm procedure and less parameters. The features obtained by MF-DFA can represent samples as well as traditional wavelet transform and Lyapunov exponents. GA can always find useful parameters for SVM with enough execution time. The results illustrate that the classification model can achieve comparable accuracy, which means that it is effective in epileptic seizure detection.

  6. Claustre Obert: 'El gust de llegir i el plaer d'escriure (en temps de canvis)'

    Serveis Audiovisuals Universitat de València


    Debat 'El gust de llegir i el plaer d'escriure (en temps de canvis)' amb l'escriptora Isabel Clara Simó, debat inclòs a l'espai 'Claustre Obert' en el Centre Cultural La Nau i en el qual es va presentar la nova Aula de Lectura i Escriptura de la Universitat de València.

  7. Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen).

    Rambaut, Andrew; Lam, Tommy T; Max Carvalho, Luiz; Pybus, Oliver G


    Gene sequences sampled at different points in time can be used to infer molecular phylogenies on a natural timescale of months or years, provided that the sequences in question undergo measurable amounts of evolutionary change between sampling times. Data sets with this property are termed heterochronous and have become increasingly common in several fields of biology, most notably the molecular epidemiology of rapidly evolving viruses. Here we introduce the cross-platform software tool, TempEst (formerly known as Path-O-Gen), for the visualization and analysis of temporally sampled sequence data. Given a molecular phylogeny and the dates of sampling for each sequence, TempEst uses an interactive regression approach to explore the association between genetic divergence through time and sampling dates. TempEst can be used to (1) assess whether there is sufficient temporal signal in the data to proceed with phylogenetic molecular clock analysis, and (2) identify sequences whose genetic divergence and sampling date are incongruent. Examination of the latter can help identify data quality problems, including errors in data annotation, sample contamination, sequence recombination, or alignment error. We recommend that all users of the molecular clock models implemented in BEAST first check their data using TempEst prior to analysis.

  8. Soya bean tempe extracts show antibacterial activity against Bacillus cereus cells and spores.

    Roubos-van den Hil, P J; Dalmas, E; Nout, M J R; Abee, T


    Tempe, a Rhizopus ssp.-fermented soya bean food product, was investigated for bacteriostatic and/or bactericidal effects against cells and spores of the food-borne pathogen Bacillus cereus. Tempe extract showed a high antibacterial activity against B. cereus ATCC 14579 based on optical density and viable count measurements. This growth inhibition was manifested by a 4 log CFU ml(-1) reduction, within the first 15 min of exposure. Tempe extracts also rapidly inactivated B. cereus spores upon germination. Viability and membrane permeability assessments using fluorescence probes showed rapid inactivation and permeabilization of the cytoplasmic membrane confirming the bactericidal mode of action. Cooked beans and Rhizopus grown on different media did not show antibacterial activity, indicating the unique association of the antibacterial activity with tempe. Subsequent characterization of the antibacterial activity revealed that heat treatment and protease addition nullified the bactericidal effect, indicating the proteinaceous nature of the bioactive compound. During fermentation of soya beans with Rhizopus, compounds are released with extensive antibacterial activity against B. cereus cells and spores. The results show the potential of producing natural antibacterial compounds that could be used as ingredients in food preservation and pathogen control. © 2009 The Authors. Journal compilation © 2009 The Society for Applied Microbiology.

  9. Fermented soya bean (tempe) extracts reduce adhesion of enterotoxigenic Escherichia coli to intestinal epithelial cells

    Roubos-van den Hil, P.J.; Nout, M.J.R.; Beumer, R.R.; Meulen, van der J.; Zwietering, M.H.


    Aims: This study aimed to investigate the effect of processed soya bean, during the successive stages of tempe fermentation and different fermentation times, on adhesion of enterotoxigenic Escherichia coli (ETEC) K88 to intestinal brush border cells as well as Caco-2 intestinal epithelial cells; and

  10. Simultaneous ground- and satellite-based observation of MF/HF auroral radio emissions

    Sato, Yuka; Kumamoto, Atsushi; Katoh, Yuto; Shinbori, Atsuki; Kadokura, Akira; Ogawa, Yasunobu


    We report on the first simultaneous measurements of medium-high frequency (MF/HF) auroral radio emissions (above 1 MHz) by ground- and satellite-based instruments. Observational data were obtained by the ground-based passive receivers in Iceland and Svalbard, and by the Plasma Waves and Sounder experiment (PWS) mounted on the Akebono satellite. We observed two simultaneous appearance events, during which the frequencies of the auroral roar and MF bursts detected at ground level were different from those of the terrestrial hectometric radiation (THR) observed by the Akebono satellite passing over the ground-based stations. This frequency difference confirms that auroral roar and THR are generated at different altitudes across the F peak. We did not observe any simultaneous observations that indicated an identical generation region of auroral roar and THR. In most cases, MF/HF auroral radio emissions were observed only by the ground-based detector, or by the satellite-based detector, even when the satellite was passing directly over the ground-based stations. A higher detection rate was observed from space than from ground level. This can primarily be explained in terms of the idea that the Akebono satellite can detect THR emissions coming from a wider region, and because a considerable portion of auroral radio emissions generated in the bottomside F region are masked by ionospheric absorption and screening in the D/E regions associated with ionization which results from auroral electrons and solar UV radiation.

  11. Pilot Study on Drinking Water Advanced Treatment by GAC-MF System

    王欣泽; 薛罡; 王宝贞; 王琳


    The pilot performance of the combined GAC-MF membrane process for drinking water advanced treatment was described. In the process of GAC adsorption, under the conditions of 20 min HRT and 6 m/h filtration rate, the removal efficiencies of UV254 and trichloromethane could reach 40% and 50%respectively and the UV254 and trichloromethane in system effluent was less than 0.015 cm-1 and 5 μg/L respectively. In the post MF membrane process, MF membrane effectively retained the particles and bacteria in raw water. The effluent turbidity was less than 0.2 NTU and no bacteria were detected at all in permeate. A computer-controlled system was enployed to control this system. The membrane operating parameters of backwash interval, duration and flux were studied. The backwash interval of 10-min, 20-min and 60-min was researched respectively, and the variation of trans-membrane pressure was also analyzed. Consequently short backwash interval was recommended under the same water consume.

  12. Cloning and expression analysis of a new anther-specific gene CaMF4 in Capsicum annuum



    Our previous study on the genic male sterile–fertile line 114AB of Capsicum annuum indicated a diversity of differentially expressed cDNA fragments in fertile and sterile lines. In this study, a transcript-derived fragment (TDF), male fertile 4(CaMF4) was chosen for further investigation to observe that this specific fragment accumulates in the flower buds of the fertile line. The full genomic DNA sequence of CaMF4 was 894 bp in length, containing two exons and one intron, and the complete coding sequence encoded a putative 11.53 kDa protein of 109 amino acids. The derived protein of CaMF4 shared similarity with the members of PGPS/D3 protein family. The expression of CaMF4 was detected in both the flower buds at stage 8 and open flowers of the male fertile line. In contrast to this observation, expression of CaMF4 was not detected in any organs of the male sterile line. Further analysis revealed that CaMF4 was expressed particularly in anthers of the fertile line. Our results suggest that CaMF4 is an anther-specific gene and might be indispensable for anther or pollen development in C.annuum.

  13. Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing


    Background Lupinus angustifolius L, also known as narrow-leafed lupin (NLL), is becoming an important grain legume crop that is valuable for sustainable farming and is becoming recognised as a potential human health food. Recent interest is being directed at NLL to improve grain production, disease and pest management and health benefits of the grain. However, studies have been hindered by a lack of extensive genomic resources for the species. Results A NLL BAC library was constructed consisting of 111,360 clones with an average insert size of 99.7 Kbp from cv Tanjil. The library has approximately 12 × genome coverage. Both ends of 9600 randomly selected BAC clones were sequenced to generate 13985 BAC end-sequences (BESs), covering approximately 1% of the NLL genome. These BESs permitted a preliminary characterisation of the NLL genome such as organisation and composition, with the BESs having approximately 39% G:C content, 16.6% repetitive DNA and 5.4% putative gene-encoding regions. From the BESs 9966 simple sequence repeat (SSR) motifs were identified and some of these are shown to be potential markers. Conclusions The NLL BAC library and BAC-end sequences are powerful resources for genetic and genomic research on lupin. These resources will provide a robust platform for future high-resolution mapping, map-based cloning, comparative genomics and assembly of whole-genome sequencing data for the species. PMID:22014081

  14. Sintesis Glikogen Hati dan Otot pada Tikus Diabetes yang Diberi Ekstrak Tempe

    I Nyoman Suarsana


    Full Text Available Glycogen is found at all of body tissue, especially mostly in liver and muscle. The objectives of thisresearch was to evaluate the content of glycogen in liver and muscle of diabetic rats that were treated withextract of tempe. A total of twenty male Spraque Dawley rats of 2 months old were used in this study. Therats were divided into four groups: (1 negative control group (K-, that were not treated extract of tempeand nondiabetic, (2 positif extract of tempe group (ET, that were treated with extract of tempe andnondiabetic (3 positif diabetic group (DM, and (4 diabetic and extract of tempe group (DM+ET. Extractof tempe was orally administered with dose 300 mg/kg bw/day. The treatment was conducted for 28 days.Effect of extract of tempe on body weight of all rats was determined at various time interval at 0, 4, 7, 14,21, and 28 days. At the end of the experiment, all rats were sacrificed by cervical dislocation. Liver andmuscle gastrocnemius were collected for analysis of glycogen level. The result of this study showed thatadministration methanol extract of tempe of 300 mg/kg bw/day can increase body weight, glycogen synthesisin the liver and muscle in normal rats (rat of ET group and also diabetic rats (rat of DM+ET group. At theend of research, diabetic rats (rat of DM group were decrease of body weight up to 5.7%. On the rat ofDM+ET group, rat of K(- group and rat of ET group were increase of body weight of 5.7%, 19.3% and 20.3%,respectively. Glycogen level both liver, and muscle at rat of ET group and rat of DM+ET group wereincrease each of 9.29%, 2.2% in liver and 18.27% and 4.02% in muscle. Glycogen level at rat of DM groupwere decrease up to 42.5% in liver and 31.6% in muscle.

  15. Ut pictura tempus : le temps et la prophétie dans Les Tragiques

    Miha Pintaric


    Full Text Available Les Tragiques de D’Aubigné apparaissent comme l’œuvre d’un auteur qui a atteint l’âge de la maturité, et avec lui la conscience que le temps est précieux et qu’il doit être consacré à Dieu. Exit donc le temps de l’éparpillement qui avait présidé à sa jeunesse, et qui n’était que temps perdu. C’est désormais l’éternité céleste qui seule doit compter : Dieu, qui est Vérité, est la fin vers laquelle doit tendre toute existence humaine. Et c’est désormais un poète-prophète qui prend la plume pour annoncer le jugement divin intemporel. Le temps est alors perçu comme une catégorie morale qui permet de juger les hommes à l’aune de leurs expériences passées (morales et immorales, définissant soit la récompense, soit les peines éternelles pour chacun d’entre eux. Dans l’Éternité en effet, le temps sera remplacé par la seule durée, qui sera ressentie comme la profusion infinie de l’Amour – ou comme l’essence même du châtiment infernal. Il revient au poète inspiré de transmettre la vérité divine aux hommes.

  16. 非洲猪瘟P72基因在Bac to Bac系统中的表达及抗原性鉴定%Bac to Bac Expression and Antigenicity Identification of P72 Gene of ASFV

    柏丽华; 侯绍华; 贾红; 袁维峰; 郭晓宇; 梁欠欠; 朱鸿飞


    This experiment was designed to express P72 gene of African swine fever virus (ASFV) in Bac to Bac system for further research in the structure, function and immunogenicity of the P72 gene. In this study, P72 gene complete sequence (1941 bp) was amplified by PCR using pGEX-6p-l-P72 for its template. The product was cloned into pFastBac Hta granulosis virus vector and transferred into DHlOBac competent cells. Recombined plasmid transferred into the Bacmid was named rBac-mid-P72 and the rBacmid-P72 was transfected into Sf9 incect cells. The recombinant baculovirus was confirmed by PCR using Ml 3 primers. Western blotting and sandwich ELISA confirmed that the P72 protein was expressed in Sf9 cells correctly and can be recognized by rabbit anti ASFV positive serum and P72 mAb. The results indicated that P72 protein expressed in Bac to Bac system had intensive specificity, stabile activity and good antigenicity,and can be used as candidate antigen for detecting ASF.%本研究旨在通过在Bac to Bac系统中表达非洲猪瘟病毒(ASFV)的P72基因,为进一步研究P72基因的结构、功能和免疫学特性奠定基础.本研究从含P72全长基因的菌株pGEX-6p-1-P72中扩增出P72基因全序列1941 bp,将扩增的基因连接于pFastBac HTa杆状病毒载体中,构建重组质粒pFastBac HTa P72,转化至感受态DH10Bac中,获得重组杆粒rBac-mid-P72,再将其转染至Sf9昆虫细胞,获得重组杆状病毒.经Western blotting和夹心ELISA分析,结果表明,P72在昆虫细胞Sf9中获得正确表达,重组P72蛋白可被特异性兔抗ASFV P72血清、P72单抗识别.结果提示,Bac to Bac系统表达的P72重组蛋白特异性强、活性稳定,具有良好的抗原性,为快速诊断ASF提供良好的候选抗原.

  17. 78 FR 48468 - M/A-Com Technology Solutions, Including On-Site Leased Workers of Kelly Temps and Aerotek CE...


    ... Kelly Temps and Aerotek CE, Torrance, California; M/A-Com Technology Solutions, Including On-Site Leased Workers of Kelly Temps and Aerotek CE, Long Beach, California; Amended Certification Regarding Eligibility... Solutions, including on-site leased workers of Kelly Temps and Aerotek CE, Torrance, California. The...

  18. LinkMF: Collaborative Filtering Recommendation Algorithm with Linked Data%LinkMF:结合Linked Data的协同过滤推荐算法

    黄山山; 马军; 郭磊; 王帅强


    协同过滤(CF)是推荐系统中应用最为广泛的推荐算法之一,然而数据稀疏性和冷启动问题是协同过滤方法的两个主要挑战.由于Linked Data整合了关于实体的丰富且结构化的特征,可以作为额外的信息源来缓解以上两种挑战.该文中我们首次提出了结合Linked Data改进CF推荐算法,基于矩阵分解提出了一种新的CF模型——LinkMF,在保证推荐准确度的基础上利用Linked Data缓解数据稀疏性和冷启动问题.首先,我们从Linked Data中抽取项目的特征表示并为项目建模;然后提出新的相似度度量方法计算项目相似度;最后利用项目相似度约束和指导MF分解过程产生推荐.在MovielLens和YAGO标准数据集上的大量实验结果表明,LinkMF优于现有的一些CF方法,特别在缓解数据稀疏性和冷启动问题上取得很好地效果.

  19. MF-RO深度处理印染废水及效果分析%Advanced treatment of printing and dyeing wastewater by MF-RO process

    邹勇斌; 颜幼平; 陈师楚; 陈志星; 陈鹏


    采用预处理-微滤(MF)-反渗透(RO)双膜技术深度处理印染废水.通过改变废水的温度、pH值、回用率和RO的操作压力,探讨其对CODCr去除率、脱盐效果的影响及原因.试验表明:最佳运行工况是操作压力为1.8 Mpa、水温为35℃、pH值为6.0~ 10.0、回收率为80%;此条件下,双膜法对CODCr的去除率和脱盐率分别达到97.4%和97.2%,浊度去除率接近100%,出水水质满足印染工艺回用要求.%MF-RO was used for the advanced treatment of the printing and dyeing wastewater after pre-treatment. Through changing the temperature, pH value, recycle rate and operating pressure of reverse osmosis, how and why those related factors affected the removal rate of CODCr and desalination effect were discussed and analyzed. The results of the test showed that, the optimal operating condition was: the pressure was 1.8 Mpa, the water temperature was 35℃, the pH value was 6.0 - 10.0, and the recovery rate was 80%. Under the above condition, the removal rates of CODCr and salinity reached 97.4% and 97.2% respectively, the removal rate of turbidity was close to 100%, the effluent water quality could meet the requirement for the process of printing and dyeing.

  20. Cinq propositions pour appréhender le temps Five Considerations on the relationship of humans to Time

    Jean Chesneaux


    Full Text Available Ce bref essai tente de dégager un certain nombre de caractères communs DU temps, considéré comme catégorie générale de « l’être » des humains. À ce titre, il se sépare délibérément de la tradition gurvitchienne, et de la méthode sociologique DES divers « temps sociaux ». Cinq entrées sont ici proposées :- La spécificité du temps dont les humains ont l’expérience par rapport à l’espace- Le rôle majeur du triptyque présent-passé-avenir (dans cet ordre- La capacité DU temps à transcender les diverses « cultures du temps » comme données anthropologiques- L’apparentement (« homologique » entre temps social et temps personnel, comme prenant le pas sur l’irréductibilité singulière du temps personnel- L’unité ultime entre le temps-englobant comme devenir général et continu (dit « temps-compagnon », et le temps inscrit (dit « temps-paramètre » en tant que fractionnable et mesurableThis brief essay attempts to delineate some characteristics of time as such, seen as a general category upon which the existence, the «Sein», of human beings, rests. Consequently, it deliberately departs from the tradition established by the sociologist Georges Gurvitch and the sociological method based on the diversity of «social times» (temps sociaux. Five major points are outlined here :- the specificity, as experienced by human beings, of time vs. space.- the foremost relevance of the present-past-future trilogy (in that order.- the ability of time as such to transcend the diversity of «time cultures» as a cluster of anthropologicalconstructs.- the close parallel between social time and personal time, this homology taking precedence over the intimate singularity of personal time.- the ultimate unity between two opposite versions of time, i.e. time as an all-embracing entity, a general, continuously moving force, and on the other hand time as a measurable, fractionable quantum, inscribed in our

  1. Efek Inokulasi Bakteri Micrococcus luteus Terhadap Pertumbuhan Jamur Benang dan Kandungan Isoflavon pada Proses Pengolahan Tempe (Effect Inoculation of Micrococcus luteus to Growth of Mold and Content Isoflavone at Tempe Processing

    Siti Harnina Bintari


    Full Text Available Tempe content of aglikon isoflavone which have potency to as anticancer compound. During processing of tempe, beside tempe mold (Rhizopus oligosporus share other microbial namely bacterium. One of the bacterium residing at tempe ecosystem is Micrococcus luteus, having the character of gram positive and can conduct genistein biotransformation and daidzein become factor II compound (6,7,4-tri hydroksi isoflavone. Its problems how amount of R.oligosporus cell and M. luteus at processing of tempe associated is full scale of yielded tempe isoflavone. The study aimed to improve full scalely tempe aglikon isoflavone through inoculation of M.luteus bacteria. Used complete random designd, with M.luteus bacteria, as independent variable and variable depended is the amount of mold cell (R..oligosporus, amount of full scale M.luteus cell and total of isoflavone. Result of one way Anava indicate that inoculation of M.luteus bacteria do not degrade the amount of R.oligosporus cell with F call (53,28 > F tab (3,10 at significancy level 5%. Amount of M.luteus cell from 1,3 x 109 cell / gr [at] fermentation first becomes 3,4 x 106 cell/gr and decrease after day fermentation second becoming 1,75 x 106 cell/gr. Proportion of increasing isoflavone content at day fermentation 1-2 from 19,1 becoming 52,7 mg/100gr. Inoculation of M. luteus bacteria increased to count isoflavone aglicone and no trouble at growth of tempe mold and it relate to the increasing of is full scale of yielded tempe isoflavone.

  2. Complete genomic sequence and an infectious BAC clone of feline herpesvirus-1 (FHV-1).

    Tai, S H Sheldon; Niikura, Masahiro; Cheng, Hans H; Kruger, John M; Wise, Annabel G; Maes, Roger K


    Infection with feline herpesvirus-1 (FHV-1) is a major cause of upper respiratory and ocular diseases in Felidae. We report the first complete genomic sequence of FHV-1, as well as the construction and characterization of a bacterial artificial chromosome (BAC) clone of FHV-1, which contains the entire FHV-1 genome and has the BAC vector inserted at the left end of U(L). Complete genomic sequences were derived from both the FHV-1 BAC clone and purified virion DNA. The FHV-1 genome is 135,797bp in size with an overall G+C content of 45%. A total of 78 open reading frames were predicted, encoding 74 distinct proteins. The gene arrangement is collinear with that of most sequenced varicelloviruses. The virus regenerated from the BAC was very similar to the parental C-27 strain in vitro in terms of plaque morphology and growth characteristics and highly virulent in cats in a preliminary in vivo study.

  3. Gene Cloning of Penicillin V Acylase from Bacillus sp BAC4 by Genomic Library



    Full Text Available This research was aimed to clone and identify penicillin V acylase (PVA gene of Bacillus sp. BAC4 by genomic library. Chromosome DNA of Bacillus sp. BAC4 was isolated by Wang method. pHB201 of E. coli was isolated by alkali lyses method. Recombinant DNA of Bacillus sp. BAC4 chromosome fragment and pHB201 was made by ligase process using T4 DNA ligase. Transformation of E. coli using this recombinant plasmid was carried out according to Mandel-Higa method. The results indicated that chromosome DNA fragment of Bacillus sp. BAC4 was bigger 23 kb with purity 1,3. Plasmid DNA fragment of E coli was 6,5 kb. Transformants laboring pHB201 recombinant plasmid was screen as blue-white colonies in a medium containing IPTG/X-gal and chloramphenicol.

  4. Is BAC Transgenesis Obsolete? State of the Art in the Era of Designer Nucleases

    J. Beil


    Full Text Available DNA constructs based on bacterial artificial chromosomes (BACs are frequently used to generate transgenic animals as they reduce the influence of position effects and allow predictable expression patterns for genes whose regulatory sequences are not fully identified. Despite these advantages BAC transgenics suffer from drawbacks such as complicated vector construction, low efficiency of transgenesis, and some remaining expression variegation. The recent development of transcription activator-like effector nucleases (TALENs and zinc finger nucleases (ZFNs has resulted in new transgenic techniques which do not have the drawbacks associated with BAC transgenesis. Initial reports indicate that such designer nucleases (DNs allow the targeted insertion of transgenes into endogenous loci by direct injection of the targeting vector and mRNA/DNA encoding the predesigned nucleases into oocytes. This results in the transgene being inserted at a specific locus in the mouse genome, thus circumventing the drawbacks associated with BAC transgenesis.

  5. Construction and characterization of a bovine BAC library with four genome-equivalent coverage

    Eilertsen Ken


    Full Text Available Abstract A bovine artificial chromosome (BAC library of 105 984 clones has been constructed in the vector pBeloBAC11 and organized in 3-dimension pools and high density membranes for screening by PCR and hybridization. The average insert size, determined after analysis of 388 clones, was estimated at 120 kb corresponding to a four genome coverage. Given the fact that a male was used to construct the library, the probability of finding any given autosomal and X or Y locus is respectively 0.98 and 0.86. The library was screened for 164 microsatellite markers and an average of 3.9 superpools was positive for each PCR system. None of the 50 or so BAC clones analysed by FISH was chimeric. This BAC library increases the international genome coverage for cattle to around 28 genome equivalents and extends the coverage of the ruminant genomes available at the Inra resource center to 15 genome equivalents.

  6. Cytogenetic analysis of Populus trichocarpa--ribosomal DNA, telomere repeat sequence, and marker-selected BACs.

    Islam-Faridi, M N; Nelson, C D; DiFazio, S P; Gunter, L E; Tuskan, G A


    The 18S-28S rDNA and 5S rDNA loci in Populus trichocarpa were localized using fluorescent in situ hybridization (FISH). Two 18S-28S rDNA sites and one 5S rDNA site were identified and located at the ends of 3 different chromosomes. FISH signals from the Arabidopsis-type telomere repeat sequence were observed at the distal ends of each chromosome. Six BAC clones selected from 2 linkage groups based on genome sequence assembly (LG-I and LG-VI) were localized on 2 chromosomes, as expected. BACs from LG-I hybridized to the longest chromosome in the complement. All BAC positions were found to be concordant with sequence assembly positions. BAC-FISH will be useful for delineating each of the Populus trichocarpa chromosomes and improving the sequence assembly of this model angiosperm tree species.

  7. Cytogenetic Analysis of Populus trichocarpa - Ribosomal DNA, Telomere Repeat Sequence, and Marker-selected BACs

    Tuskan, Gerald A [ORNL; Gunter, Lee E [ORNL; DiFazio, Stephen P [West Virginia University


    The 18S-28S rDNA and 5S rDNA loci in Populus trichocarpa were localized using fluorescent in situ hybridization (FISH). Two 18S-28S rDNA sites and one 5S rDNA site were identified and located at the ends of 3 different chromosomes. FISH signals from the Arabidopsis -type telomere repeat sequence were observed at the distal ends of each chromosome. Six BAC clones selected from 2 linkage groups based on genome sequence assembly (LG-I and LG-VI) were localized on 2 chromosomes, as expected. BACs from LG-I hybridized to the longest chromosome in the complement. All BAC positions were found to be concordant with sequence assembly positions. BAC-FISH will be useful for delineating each of the Populus trichocarpa chromosomes and improving the sequence assembly of this model angiosperm tree species.

  8. Integrated karyotyping of sorghum by in situ hybridization of landed BACs.

    Kim, Jeong-Soon; Childs, Kevin L; Islam-Faridi, M Nurul; Menz, Monica A; Klein, Robert R; Klein, Patricia E; Price, H James; Mullet, John E; Stelly, David M


    The reliability of genome analysis and proficiency of genetic manipulation are increased by assignment of linkage groups to specific chromosomes, placement of centromeres, and orientation with respect to telomeres. We have endeavored to establish means to enable these steps in sorghum (Sorghum bicolor (L.) Moench), the genome of which contains ca. 780 Mbp spread across n = 10 chromosomes. Our approach relies on fluorescence in situ hybridization (FISH) and integrated structural genomic resources, including large-insert genomic clones in bacterial artificial chromosome (BAC) libraries. To develop robust FISH probes, we selected sorghum BACs by association with molecular markers that map near the ends of linkage groups, in regions inferred to be high in recombination. Overall, we selected 22 BACs that encompass the 10 linkage groups. As a prelude to development of a multiprobe FISH cocktail, we evaluated BAC-derived probes individually and in small groups. Biotin- and digoxygenin-labeled probes were made directly from the BAC clones and hybridized in situ to chromosomes without using suppressive unlabelled C0t-1 DNA. Based on FISH-signal strength and the relative degree of background signal, we judged 19 BAC-derived probes to be satisfactory. Based on their relative position, and collective association with all 10 linkage groups, we chose 17 of the 19 BACs to develop a 17-locus probe cocktail for dual-color detection. FISH of the cocktail allowed simultaneous identification of all 10 chromosomes. The results indicate that linkage and physical maps of sorghum allow facile selection of BAC clones according to position and FISH-signal quality. This capability will enable development of a high-quality molecular cytogenetic map and an integrated genomics system for sorghum, without need of chromosome flow sorting or microdissection. Moreover, transgeneric FISH experiments suggest that the sorghum system might be applicable to other Gramineae.

  9. 23 CFR 1225.4 - Adoption of 0.08 BAC per se law.


    ... 23 Highways 1 2010-04-01 2010-04-01 false Adoption of 0.08 BAC per se law. 1225.4 Section 1225.4... TRANSPORTATION GUIDELINES OPERATION OF MOTOR VEHICLES BY INTOXICATED PERSONS § 1225.4 Adoption of 0.08 BAC per se... is enforcing a law that provides that any person with a blood or breath alcohol concentration...

  10. piggyBac-mediated phenotypic correction of factor VIII deficiency

    Janice M Staber


    Full Text Available Hemophilia A, caused by a deficiency in factor VIII (FVIII, is the most severe inherited bleeding disorder. Hemophilia A is an attractive gene therapy candidate because even small increases in FVIII levels will positively alter the phenotype. While several vectors are under investigation, gene addition from an integrated transgene offers the possibility of long term expression. We engineered the DNA transposon-based vector, piggyBac (PB, to carry a codon-optimized B-domain deleted human FVIII cDNA. Evaluation of gene transfer efficiency in FVIII null mice demonstrated that PB containing the FVIII cDNA, delivered via hydrodynamic injection to immunocompetent hemophilia mice, conferred persistent gene expression, attaining mean FVIII activity of approximately 60% with 3/19 developing inhibitors. In addition to efficacious expression, a goal of gene transfer-based therapies is to develop vectors with low toxicity. To assess endoplasmic reticulum stress in hepatocytes stably expressing the transgene, we evaluated levels of ER stress markers via qPCR and found no evidence of cell stress. To evaluate phenotypic correction, a tail clip assay performed at the end of the study revealed reduced blood loss. These data demonstrate that PB can be used to achieve sustained FVIII expression and long-term therapeutic benefit in a mouse model.

  11. Expression Analysis of CB2-GFP BAC Transgenic Mice.

    Schmöle, Anne-Caroline; Lundt, Ramona; Gennequin, Benjamin; Schrage, Hanna; Beins, Eva; Krämer, Alexandra; Zimmer, Till; Limmer, Andreas; Zimmer, Andreas; Otte, David-Marian


    The endocannabinoid system (ECS) is a retrograde messenger system, consisting of lipid signaling molecules that bind to at least two G-protein-coupled receptors, Cannabinoid receptor 1 and 2 (CB1 and 2). As CB2 is primarily expressed on immune cells such as B cells, T cells, macrophages, dendritic cells, and microglia, it is of great interest how CB2 contributes to immune cell development and function in health and disease. Here, understanding the mechanisms of CB2 involvement in immune-cell function as well as the trafficking and regulation of CB2 expressing cells are crucial issues. Up to now, CB2 antibodies produce unclear results, especially those targeting the murine protein. Therefore, we have generated BAC transgenic GFP reporter mice (CB2-GFPTg) to trace CB2 expression in vitro and in situ. Those mice express GFP under the CB2 promoter and display GFP expression paralleling CB2 expression on the transcript level in spleen, thymus and brain tissue. Furthermore, by using fluorescence techniques we show that the major sources for GFP-CB2 expression are B cells in spleen and blood and microglia in the brain. This novel CB2-GFP transgenic reporter mouse line represents a powerful resource to study CB2 expression in different cell types. Furthermore, it could be used for analyzing CB2-mediated mobilization and trafficking of immune cells as well as studying the fate of recruited immune cells in models of acute and chronic inflammation.

  12. Expression Analysis of CB2-GFP BAC Transgenic Mice.

    Anne-Caroline Schmöle

    Full Text Available The endocannabinoid system (ECS is a retrograde messenger system, consisting of lipid signaling molecules that bind to at least two G-protein-coupled receptors, Cannabinoid receptor 1 and 2 (CB1 and 2. As CB2 is primarily expressed on immune cells such as B cells, T cells, macrophages, dendritic cells, and microglia, it is of great interest how CB2 contributes to immune cell development and function in health and disease. Here, understanding the mechanisms of CB2 involvement in immune-cell function as well as the trafficking and regulation of CB2 expressing cells are crucial issues. Up to now, CB2 antibodies produce unclear results, especially those targeting the murine protein. Therefore, we have generated BAC transgenic GFP reporter mice (CB2-GFPTg to trace CB2 expression in vitro and in situ. Those mice express GFP under the CB2 promoter and display GFP expression paralleling CB2 expression on the transcript level in spleen, thymus and brain tissue. Furthermore, by using fluorescence techniques we show that the major sources for GFP-CB2 expression are B cells in spleen and blood and microglia in the brain. This novel CB2-GFP transgenic reporter mouse line represents a powerful resource to study CB2 expression in different cell types. Furthermore, it could be used for analyzing CB2-mediated mobilization and trafficking of immune cells as well as studying the fate of recruited immune cells in models of acute and chronic inflammation.

  13. Distribution of Genes and Repetitive Elements in the Diabrotica virgifera virgifera Genome Estimated Using BAC Sequencing

    Brad S. Coates


    Full Text Available Feeding damage caused by the western corn rootworm, Diabrotica virgifera virgifera, is destructive to corn plants in North America and Europe where control remains challenging due to evolution of resistance to chemical and transgenic toxins. A BAC library, DvvBAC1, containing 109,486 clones with 104±34.5 kb inserts was created, which has an ~4.56X genome coverage based upon a 2.58 Gb (2.80 pg flow cytometry-estimated haploid genome size. Paired end sequencing of 1037 BAC inserts produced 1.17 Mb of data (~0.05% genome coverage and indicated ~9.4 and 16.0% of reads encode, respectively, endogenous genes and transposable elements (TEs. Sequencing genes within BAC full inserts demonstrated that TE densities are high within intergenic and intron regions and contribute to the increased gene size. Comparison of homologous genome regions cloned within different BAC clones indicated that TE movement may cause haplotype variation within the inbred strain. The data presented here indicate that the D. virgifera virgifera genome is large in size and contains a high proportion of repetitive sequence. These BAC sequencing methods that are applicable for characterization of genomes prior to sequencing may likely be valuable resources for genome annotation as well as scaffolding.

  14. The Functionality of Minimal PiggyBac Transposons in Mammalian Cells

    Boris Troyanovsky


    Full Text Available Minimal piggyBac vectors are a modified single-plasmid version of the classical piggyBac delivery system that can be used for stable transgene integration. These vectors have a truncated terminal domain in the delivery cassette and thus, integrate significantly less flanking transposon DNA into host cell chromatin than classical piggyBac vectors. Herein, we test various characteristics of this modified transposon. The integration efficiency of minimal piggyBac vectors was inversely related to the size of both the transposon and the entire plasmid, but inserts as large as 15 kb were efficiently integrated. Open and super-coiled vectors demonstrated the same integration efficiency while DNA methylation decreased the integration efficiency and silenced the expression of previously integrated sequences in some cell types. Importantly, the incidence of plasmid backbone integration was not increased above that seen in nontransposon control vectors. In BALB/c mice, we demonstrated prolonged expression of two transgenes (intracellular mCherry and secretable Gaussia luciferase when delivered by the minimal piggyBac that resulted in a more sustained antibody production against the immunogenic luciferase than when delivered by a transient (nontransposon vector plasmid. We conclude that minimal piggyBac vectors are an effective alternative to other integrative systems for stable DNA delivery in vitro and in vivo.

  15. Korean BAC library construction and characterization of HLA-DRA, HLA-DRB3.

    Park, Mi-Hyun; Lee, Hye-Ja; Bok, Jeong; Kim, Cheol-Hwan; Hong, Seong-Tshool; Park, Chan; Kimm, KuChan; Oh, Bermseok; Lee, Jong-Young


    A human bacterial artificial chromosome (BAC) library was constructed with high molecular weight DNA extracted from the blood of a male Korean. This Korean BAC library contains 100,224 clones of insert size ranging from 70 to 150 kb, with an average size of 86 kb, corresponding to a 2.9-fold redundancy of the genome. The average insert size was determined from 288 randomly selected BAC clones that were well distributed among all the chromosomes. We developed a pooling system and three-step PCR screen for the Korean BAC library to isolate desired BAC clones, and we confirmed its utility using primer pairs designed for one of the clones. The Korean BAC library and screening pools will allow PCR-based screening of the Korean genome for any gene of interest. We also determined the allele types of HLA-DRA and HLA-DRB3 of clone KB55453, located in the HLA class II region on chromosome 6p21.3. The HLA-DRA and DRB3 genes in this clone were identified as the DRA*010202 and DRB3*01010201 types, respectively. The haplotype found in this library will provide useful information in future human disease studies.

  16. Sequencing of BAC pools by different next generation sequencing platforms and strategies

    Scholz Uwe


    Full Text Available Abstract Background Next generation sequencing of BACs is a viable option for deciphering the sequence of even large and highly repetitive genomes. In order to optimize this strategy, we examined the influence of read length on the quality of Roche/454 sequence assemblies, to what extent Illumina/Solexa mate pairs (MPs improve the assemblies by scaffolding and whether barcoding of BACs is dispensable. Results Sequencing four BACs with both FLX and Titanium technologies revealed similar sequencing accuracy, but showed that the longer Titanium reads produce considerably less misassemblies and gaps. The 454 assemblies of 96 barcoded BACs were improved by scaffolding 79% of the total contig length with MPs from a non-barcoded library. Assembly of the unmasked 454 sequences without separation by barcodes revealed chimeric contig formation to be a major problem, encompassing 47% of the total contig length. Masking the sequences reduced this fraction to 24%. Conclusion Optimal BAC pool sequencing should be based on the longest available reads, with barcoding essential for a comprehensive assessment of both repetitive and non-repetitive sequence information. When interest is restricted to non-repetitive regions and repeats are masked prior to assembly, barcoding is non-essential. In any case, the assemblies can be improved considerably by scaffolding with non-barcoded BAC pool MPs.

  17. BAC-HAPPY mapping (BAP mapping): a new and efficient protocol for physical mapping.

    Vu, Giang T H; Dear, Paul H; Caligari, Peter D S; Wilkinson, Mike J


    Physical and linkage mapping underpin efforts to sequence and characterize the genomes of eukaryotic organisms by providing a skeleton framework for whole genome assembly. Hitherto, linkage and physical "contig" maps were generated independently prior to merging. Here, we develop a new and easy method, BAC HAPPY MAPPING (BAP mapping), that utilizes BAC library pools as a HAPPY mapping panel together with an Mbp-sized DNA panel to integrate the linkage and physical mapping efforts into one pipeline. Using Arabidopsis thaliana as an exemplar, a set of 40 Sequence Tagged Site (STS) markers spanning approximately 10% of chromosome 4 were simultaneously assembled onto a BAP map compiled using both a series of BAC pools each comprising 0.7x genome coverage and dilute (0.7x genome) samples of sheared genomic DNA. The resultant BAP map overcomes the need for polymorphic loci to separate genetic loci by recombination and allows physical mapping in segments of suppressed recombination that are difficult to analyze using traditional mapping techniques. Even virtual "BAC-HAPPY-mapping" to convert BAC landing data into BAC linkage contigs is possible.

  18. Uncertainty of Blood Alcohol Concentration (BAC Results as Related to Instrumental Conditions: Optimization and Robustness of BAC Analysis Headspace Parameters

    Haleigh A. Boswell


    Full Text Available Analysis of blood alcohol concentration is a routine analysis performed in many forensic laboratories. This analysis commonly utilizes static headspace sampling, followed by gas chromatography combined with flame ionization detection (GC-FID. Studies have shown several “optimal” methods for instrumental operating conditions, which are intended to yield accurate and precise data. Given that different instruments, sampling methods, application specific columns and parameters are often utilized, it is much less common to find information on the robustness of these reported conditions. A major problem can arise when these “optimal” conditions may not also be robust, thus producing data with higher than desired uncertainty or potentially inaccurate results. The goal of this research was to incorporate the principles of quality by design (QBD in the adjustment and determination of BAC (blood alcohol concentration instrumental headspace parameters, thereby ensuring that minor instrumental variations, which occur as a matter of normal work, do not appreciably affect the final results of this analysis. This study discusses both the QBD principles as well as the results of the experiments, which allow for determination of more favorable instrumental headspace conditions. Additionally, method detection limits will also be reported in order to determine a reporting threshold and the degree of uncertainty at the common threshold value of 0.08 g/dL. Furthermore, the comparison of two internal standards, n-propanol and t-butanol, will be investigated. The study showed that an altered parameter of 85 °C headspace oven temperature and 15 psi headspace vial pressurization produces the lowest percent relative standard deviation of 1.3% when t-butanol is implemented as an internal standard, at least for one very common platform. The study also showed that an altered parameter of 100 °C headspace oven temperature and 15-psi headspace vial pressurization

  19. A low-copy-number plasmid for retrieval of toxic genes from BACs and generation of conditional targeting constructs.

    Na, Giyoun; Wolfe, Andrew; Ko, Chemyong; Youn, Hyesook; Lee, Young-Min; Byun, Sung June; Jeon, Iksoo; Koo, Yongbum


    Bacterial Artificial Chromosome (BAC) clones are widely used for retrieving genomic DNA sequences for gene targeting. In this study, low-copy-number plasmids pBAC-FB, pBAC-FC, and pBAC-DE, which carry the F plasmid replicon, were generated from pBACe3.6. pBAC-FB was successfully used to retrieve a sequence of a BAC that was resistant to retrieval by a high-copy-number plasmid via λ Red-mediated recombineering (gap-repair cloning). This plasmid was also used to retrieve two other genes from BAC, indicating its general usability retrieving genes from BAC. The retrieved genes were manipulated in generating targeting vectors for gene knockouts by recombineering. The functionality of the targeting vector was further validated in a targeting experiment with C57BL/6 embryonic stem cells. The low-copy-number plasmid pBAC-FB is a plasmid of choice to retrieve toxic DNA sequences from BACs and to manipulate them to generate gene-targeting constructs by recombineering.

  20. LukMF' is the major secreted leukocidin of bovine Staphylococcus aureus and is produced in vivo during bovine mastitis.

    Vrieling, Manouk; Boerhout, Eveline M; van Wigcheren, Glenn F; Koymans, Kirsten J; Mols-Vorstermans, Tanja G; de Haas, Carla J C; Aerts, Piet C; Daemen, Ineke J J M; van Kessel, Kok P M; Koets, Ad P; Rutten, Victor P M G; Nuijten, Piet J M; van Strijp, Jos A G; Benedictus, Lindert


    Staphylococcus aureus is a major human and animal pathogen and a common cause of mastitis in cattle. S. aureus secretes several leukocidins that target bovine neutrophils, crucial effector cells in the defence against bacterial pathogens. In this study, we investigated the role of staphylococcal leukocidins in the pathogenesis of bovine S. aureus disease. We show that LukAB, in contrast to the γ-hemolysins, LukED, and LukMF', was unable to kill bovine neutrophils, and identified CXCR2 as a bovine receptor for HlgAB and LukED. Furthermore, we assessed functional leukocidin secretion by bovine mastitis isolates and observed that, although leukocidin production was strain dependent, LukMF' was most abundantly secreted and the major toxin killing bovine neutrophils. To determine the role of LukMF' in bovine mastitis, cattle were challenged with high (S1444) or intermediate (S1449, S1463) LukMF'-producing isolates. Only animals infected with S1444 developed severe clinical symptoms. Importantly, LukM was produced in vivo during the course of infection and levels in milk were associated with the severity of mastitis. Altogether, these findings underline the importance of LukMF' as a virulence factor and support the development of therapeutic approaches targeting LukMF' to control S. aureus mastitis in cattle.

  1. Developing trading strategies based on fractal finance: An application of MF-DFA in the context of Islamic equities

    Dewandaru, Ginanjar; Masih, Rumi; Bacha, Obiyathulla Ismath; Masih, A. Mansur. M.


    We provide a new contribution to trading strategies by using multi-fractal de-trended fluctuation analysis (MF-DFA), imported from econophysics, to complement various momentum strategies. The method provides a single measure that can capture both persistency and anti-persistency in stock prices, accounting for multifractality. This study uses a sample of Islamic stocks listed in the U.S. Dow Jones Islamic market for a sample period covering 16 years starting in 1996. The findings show that the MF-DFA strategy produces monthly excess returns of 6.12%, outperforming other various momentum strategies. Even though the risk of the MF-DFA strategy may be relatively higher, it can still produce a Sharpe ratio of 0.164, which is substantially higher than that of the other strategies. When we control for the MF-DFA factor with the other factors, its pure factor return is still able to yield a monthly excess return of 1.35%. Finally, we combine the momentum and MF-DFA strategies, with the proportions of 90/10, 80/20, and 70/30 and by doing so we demonstrate that the MF-DFA measure can boost the total monthly excess returns as well as Sharpe ratio. The value added is non-linear which implies that the additional returns are associated with lower incremental risk.

  2. Susceptibility of Salmonella typhi and Brucella melitensis to the new fluoroquinolone rufloxacin (MF 934).

    Qadri, S M; Ayub, A; Ueno, Y; Saldin, H


    The antimicrobial activity of the new fluoroquinolone rufloxacin (MF 934) was evaluated by a standardized agar dilution method against recent clinical isolates of Salmonella typhi (67 strains) and Brucella melitensis (108 isolates). The results were compared with 5 other commercially available or investigational fluoroquinolones. All the isolates of S. typhi were inhibited by 1.0 mg/l of rufloxacin as compared to 4-8 mg/l for B. melitensis. Minimum inhibitory concentrations of rufloxacin against both S. typhi and B. melitensis were 4-16 times higher than those of other fluoroquinolones.

  3. Geospace ionosphere research with a MF/HF radio instrument on a cubesat

    Kallio, E. J.; Aikio, A. T.; Alho, M.; Fontell, M.; van Gijlswijk, R.; Kauristie, K.; Kestilä, A.; Koskimaa, P.; Makela, J. S.; Mäkelä, M.; Turunen, E.; Vanhamäki, H.


    Modern technology provides new possibilities to study geospace and its ionosphere, using spacecraft and and computer simulations. A type of nanosatellites, CubeSats, provide a cost effective possibility to provide in-situ measurements in the ionosphere. Moreover, combined CubeSat observations with ground-based observations gives a new view on auroras and associated electromagnetic phenomena. Especially joint and active CubeSat - ground based observation campaigns enable the possibility of studying the 3D structure of the ionosphere. Furthermore using several CubeSats to form satellite constellations enables much higher temporal resolution. At the same time, increasing computation capacity has made it possible to perform simulations where properties of the ionosphere, such as propagation of the electromagnetic waves in the medium frequency, MF (0.3-3 MHz) and high frequency, HF (3-30 MHz), ranges is based on a 3D ionospheric model and on first-principles modelling. Electromagnetic waves at those frequencies are strongly affected by ionospheric electrons and, consequently, those frequencies can be used for studying the plasma. On the other hand, even if the ionosphere originally enables long-range telecommunication at MF and HF frequencies, the frequent occurrence of spatiotemporal variations in the ionosphere disturbs communication channels, especially at high latitudes. Therefore, study of the MF and HF waves in the ionosphere has both a strong science and technology interests. We present computational simulation results and measuring principles and techniques to investigate the arctic ionosphere by a polar orbiting CubeSat whose novel AM radio instrument measures HF and MF waves. The cubesat, which contains also a white light aurora camera, is planned to be launched in 2017 ( We have modelled the propagation of the radio waves, both ground generated man-made waves and space formed space weather related waves, through the 3D

  4. Two new antibiotic pyridones produced by a marine fungus, Trichoderma sp. strain MF106.

    Wu, Bin; Oesker, Vanessa; Wiese, Jutta; Schmaljohann, Rolf; Imhoff, Johannes F


    Two unusual pyridones, trichodin A (1) and trichodin B (2), together with the known compound, pyridoxatin (3), were extracted from mycelia and culture broth of the marine fungus, Trichoderma sp. strain MF106 isolated from the Greenland Seas. The structures of the new compounds were characterized as an intramolecular cyclization of a pyridine basic backbone with a phenyl group. The structure and relative configuration of the new compounds were established by spectroscopic means. The new compound 1 and the known compound 3 showed antibiotic activities against the clinically relevant microorganism, Staphylococcus epidermidis, with IC₅₀ values of 24 μM and 4 μM, respectively.

  5. Two New Antibiotic Pyridones Produced by a Marine Fungus, Trichoderma sp. Strain MF106

    Bin Wu


    Full Text Available Two unusual pyridones, trichodin A (1 and trichodin B (2, together with the known compound, pyridoxatin (3, were extracted from mycelia and culture broth of the marine fungus, Trichoderma sp. strain MF106 isolated from the Greenland Seas. The structures of the new compounds were characterized as an intramolecular cyclization of a pyridine basic backbone with a phenyl group. The structure and relative configuration of the new compounds were established by spectroscopic means. The new compound 1 and the known compound 3 showed antibiotic activities against the clinically relevant microorganism, Staphylococcus epidermidis, with IC50 values of 24 μM and 4 μM, respectively.

  6. Ataxin-2 regulates RGS8 translation in a new BAC-SCA2 transgenic mouse model.

    Warunee Dansithong


    Full Text Available Spinocerebellar ataxia type 2 (SCA2 is an autosomal dominant disorder with progressive degeneration of cerebellar Purkinje cells (PCs and other neurons caused by expansion of a glutamine (Q tract in the ATXN2 protein. We generated BAC transgenic lines in which the full-length human ATXN2 gene was transcribed using its endogenous regulatory machinery. Mice with the ATXN2 BAC transgene with an expanded CAG repeat (BAC-Q72 developed a progressive cellular and motor phenotype, whereas BAC mice expressing wild-type human ATXN2 (BAC-Q22 were indistinguishable from control mice. Expression analysis of laser-capture microdissected (LCM fractions and regional expression confirmed that the BAC transgene was expressed in PCs and in other neuronal groups such as granule cells (GCs and neurons in deep cerebellar nuclei as well as in spinal cord. Transcriptome analysis by deep RNA-sequencing revealed that BAC-Q72 mice had progressive changes in steady-state levels of specific mRNAs including Rgs8, one of the earliest down-regulated transcripts in the Pcp2-ATXN2[Q127] mouse line. Consistent with LCM analysis, transcriptome changes analyzed by deep RNA-sequencing were not restricted to PCs, but were also seen in transcripts enriched in GCs such as Neurod1. BAC-Q72, but not BAC-Q22 mice had reduced Rgs8 mRNA levels and even more severely reduced steady-state protein levels. Using RNA immunoprecipitation we showed that ATXN2 interacted selectively with RGS8 mRNA. This interaction was impaired when ATXN2 harbored an expanded polyglutamine. Mutant ATXN2 also reduced RGS8 expression in an in vitro coupled translation assay when compared with equal expression of wild-type ATXN2-Q22. Reduced abundance of Rgs8 in Pcp2-ATXN2[Q127] and BAC-Q72 mice supports our observations of a hyper-excitable mGluR1-ITPR1 signaling axis in SCA2, as RGS proteins are linked to attenuating mGluR1 signaling.

  7. A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome

    de Boer Jan M


    Full Text Available Abstract Background Potato is the world's third most important food crop, yet cultivar improvement and genomic research in general remain difficult because of the heterozygous and tetraploid nature of its genome. The development of physical map resources that can facilitate genomic analyses in potato has so far been very limited. Here we present the methods of construction and the general statistics of the first two genome-wide BAC physical maps of potato, which were made from the heterozygous diploid clone RH89-039-16 (RH. Results First, a gel electrophoresis-based physical map was made by AFLP fingerprinting of 64478 BAC clones, which were aligned into 4150 contigs with an estimated total length of 1361 Mb. Screening of BAC pools, followed by the KeyMaps in silico anchoring procedure, identified 1725 AFLP markers in the physical map, and 1252 BAC contigs were anchored the ultradense potato genetic map. A second, sequence-tag-based physical map was constructed from 65919 whole genome profiling (WGP BAC fingerprints and these were aligned into 3601 BAC contigs spanning 1396 Mb. The 39733 BAC clones that overlap between both physical maps provided anchors to 1127 contigs in the WGP physical map, and reduced the number of contigs to around 2800 in each map separately. Both physical maps were 1.64 times longer than the 850 Mb potato genome. Genome heterozygosity and incomplete merging of BAC contigs are two factors that can explain this map inflation. The contig information of both physical maps was united in a single table that describes hybrid potato physical map. Conclusions The AFLP physical map has already been used by the Potato Genome Sequencing Consortium for sequencing 10% of the heterozygous genome of clone RH on a BAC-by-BAC basis. By layering a new WGP physical map on top of the AFLP physical map, a genetically anchored genome-wide framework of 322434 sequence tags has been created. This reference framework can be used for anchoring and

  8. The Structure of the Temp Wage Gap in Slack Labor Markets

    Jahn, Elke

    As a consequence of the rapid growth of temporary agency employment in Germa-ny the debate on the remuneration of temporary agency workers has intensified recently. The study finds that the temp wage gap in Germany is indeed large. Decomposition reveals that the gap is mainly driven by differences...... for temporary help agencies to pay their workers according to a collective agreement. Surprisingly, the unionization of the sector could not bring the widening wage gap to a halt....... in personal characteristics. Temps already suffer from a marked wage decline before entering the temporary help sector. Nevertheless, temporary help employment does not leave a long-lasting scar. After leaving the sector, workers no longer suffer from a wage penalty. A recent reform set a high incentive...

  9. Optical design and initial results from NIST's AMMT/TEMPS facility

    Grantham, Steven; Lane, Brandon; Neira, Jorge; Mekhontsev, Sergey; Vlasea, Mihaela; Hanssen, Leonard


    NIST's Physical Measurement and Engineering Laboratories are jointly developing the Additive Manufacturing Measurement Test bed (AMMT)/ Temperature and Emittance of Melts, Powders and Solids (TEMPS) facilities. These facilities will be co-located on an open architecture laser-based powder bed fusion system allowing users full access to the system's operation parameters. This will provide users with access to machine-independent monitoring and control of the powder bed fusion process. In this paper there will be emphasis on the AMMT, which incorporates in-line visible light collection optics for monitoring and feedback control of the powder bed fusion process. We shall present an overview of the AMMT/TEMPs program and it goals. The optical and mechanical design of the open architecture powder-bed fusion system and the AMMT will be also be described. In addition, preliminary measurement results from the system along with the current system status of the system the will be described.

  10. EVALUASI FISIKOKIMIA SOSIS TEMPE-DUMBO [Physicochemical Evaluation of Tempeh-Fish Sausage

    T J Moedjiharto


    Full Text Available Evaluation on the physicochemical property of “tempe-dumbo” sausage made from meat of Clarias gariepinus and tempeh flour has been carried out. Randomized design with tree replications were used. Sausages were prepared from tempeh flour and fish meat in the proportion of: 1:0; 1:0,2; 1:0,3; 1:10,4 and 1:0,5 (w /w. Hardness, total volatile bases (TVB, and taste were evaluated. The results showed that the proportion of flour tempeh influenced the content the quality of “tempe-dumbo” sausage in term of protein quality, TVB.and taste. The addition of tempeh flour had significant effect the decrease essential amino acids, of total amino acids content, and organoleptic ascore (taste and flavor. . “Tempeh-dumbo” sausage contained essential amino acid of 27,354 mg/ g, protein which was consisted of 7 essential amino acid.

  11. George Herbert Mead, La Philosophie du temps en perspective(s)

    Leclerc, Natalia


    L’ouvrage intitulé La Philosophie du temps en perspective(s) comporte plusieurs textes de G. H. Mead, précédés d’une importante introduction de Michèle Leclerc-Olive, qui présente « Les figures du temps dans la philosophie de George Herbert Mead ». Son caractère pédagogique est très appréciable : elle permet en effet d’entrer progressivement dans la pensée, ou plutôt dans les différentes facettes et étapes de la réflexion de Mead. Il est extrêmement dense, et le présent compte rendu n’a pas d...

  12. Temps de desig: la novel·la de Jeanne Hersch

    Mart Segarra


    Full Text Available L’única novel·la publicada per la filòsofa Jeanne Hersch (Temps alternés, 1942 consisteix principalment en una reflexió sobre el temps i sobre la relació del subjecte amb l’Altre.Descriu dos tipus de temporalitat: un present etern, en què la narradora adolescent viu l’instant sense plantejar-se cap fita, i un present de maduresa fet de records i de projeccions cap al futur. Exposa també dues possibilitats de relació entre el subjecte i l’Altre: la separació total, marcada per l’hermetisme del propi cos, i la fusió, encarnada en el cos porós de la dona embarassada. Aquestes alternatives es resumeixen en l’oposició entre amor i desig.

  13. Le verbe français : les temps du passé

    Lina Avendaño Anguita


    Full Text Available Dans un souci de contextualisation des faits de langue, nous nous proposons de relever les difficultés liées à l’usage des temps du passé en français. Ce faisant, nous nous sommes basée sur un corpus de grammaires du français éditées en Espagne à partir de 1970 afin d’allier les domaines du descriptif et du contrastif. Formant écran à la compréhension des mécanismes linguistiques, la disparité de langues proches exige non seulement une mise en perspective du décalage entre l’utilisation normative des temps verbaux, dans une optique purement morphologique ou chronologique, et celle qu’entraîne la mise en discours, mais également la contextualisation des descriptions et des terminologies.

  14. Quand l’esprit « dit » le temps : la conscience du temps chez Aristote, Augustin et Husserl

    Michael R. Kelly


    Full Text Available Cet essai met en cause la comparaison historique courante qui relie le traitement husserlien de la conscience du temps à la tradition philosophique occidentale par le biais du livre IX des Confessions d’Augustin. Je soutiens notamment que cette comparaison n’est valable qu’à l’égard des leçons sur le temps de 1905 (qui expliquent l’appréhension du temps par le recours à l’étirement de la conscience opéré par la mémoire et non pour la théorie husserlienne ultérieure, que l’on peut dater autour de 1908 (qui critique ouvertement les premières leçons à cause la position défectueuse et contre-intuitive qu’y était défendue selon laquelle la mémoire étend la perception. Après avoir pointé les défauts de la théorie du temps partagée par Augustin et par le Husserl de 1905, j’approfondis la distinction, élaborée plus tard par Husserl à partir de 1911, entre mémoire et rétention, et j’examine l’hypothèse selon laquelle la théorie aristotélicienne du temps telle qu’elle est présentée dans le IVème livre de la Physique pourrait représenter une meilleur terme de comparaison historique pour la théorie husserlienne de la maturité, notamment dans la mesure où elle s’appuie sur l’idée que c’est « l’esprit qui dit les “maintenant” comme deux ».This essay contests the standard historical comparison that links Husserl's account of time-consciousness to the western philosophical tradition by way of Book XI of Augustine's "Confessions." I argue that this comparison holds only with respect to Husserl's 1905 lectures on time, which explains the apprehension of time by recourse to a memorial distenction of consciousness, and not his later theory dating around 1908, which claimed that the earlier lectures advanced the flawed and counter-intuitive position that memory extends perception. After tracing the shortcomings of Augustine's and Husserl's 1905 theory of time, I develop Husserl

  15. BAC Library Construction for Pumpkin Genome%南瓜基因组DNA的细菌人工染色体(BAC)文库的构建

    赵茜; 张丽艳; 徐丽珍; 吴建忠


    [Objective] The paper was to construct the bacterial artificial chromosome (BAC) library for pumpkin genomic DNA.[Method] The BAC library of pumpkin genomic DNA was constructed by using pumpkin buds as materials and HindIII enzyme-cutting system.[Result] The BAC Library of pumpkin genomic DNA was constructed successfully.[Conclusion] The technology laid a foundation for the cloning and functional verification of related genes,physical mapping and genome sequencing of pumpkin.%[目的]构建南瓜基因组DNA的细菌人工染色体(BAC)文库.[方法]以南瓜幼芽为材料,利用HindⅢ酶切体系,初步构建南瓜基因组DNA的BAC文库.[结果]研究成功构建了南瓜基因组DNA的BAC文库.[结论]该技术为南瓜相关基因的克隆、功能验证、物理图谱的构建和基因组测序等研究工作奠定了基础.

  16. Penjualan Makanan Berbahan Dasar Tahu dan Tempe Berbasis E-Commerce

    Dwianto, Fadli


    Dalam tugas akhir ini, penulis akan memberikan kajian tentang pembangunan sebuah website e-commerce penjualan makanan, kajian ini didesain dengan Adobe Photoshop Elements 12 dan dibangun dengan menggunakan Adobe Dreamweaver CS3, dan perangkat lunak Apache Triad 2, PhpMyAdmin, CSS, dan HTML. Website ini bertujuan untuk meningkatkan minat masyarakat akan makanan sehat seperti tahu tempe tanpa harus repot membuat sendiri ataupun membeli dengan penjualnya. 112406197

  17. Contribution à l’étude du tempérage du chocolat en cuves agitées

    Rius Fonoll, Joan


    Le tempérage du chocolat est une opération clé dans son processus de production. Le chocolat doit être tempéré pour obtenir la forme cristalline voulue parmi les six que présente le beurre de cacao. Les clés pour le bien tempérer sont suivre un cycle thermique dépendant du type de chocolat ainsi qu’un cisaillement adéquat dans une cuve. Ce mémoire veut analyser une nouvelle technique de tempérage appelée easy temper. Pour ce faire, il faut commencer par bien comprendre les p...

  18. Efficient production of transgenic chickens based on piggyBac.

    Liu, Xiaojuan; Li, Ning; Hu, Xiaoxiang; Zhang, Ran; Li, Qingyuan; Cao, Dainan; Liu, Tongxin; Zhang, Yaqiong; Liu, Xiaofang


    Transgenic techniques in chickens have been developed much more slowly than in mammals due to chickens' unique reproduction mechanism. Retroviral methods have been the most successful. piggyBac (PB) is a transposon that has a 13 bp perfect terminal invert repeat sequence. PB can be inserted into TTAA sites and can also be precisely excised in mammals. Therefore, we have selected PB as a candidate to establish a new method to produce transgenic chickens. We constructed three donor vectors (ZGl-neo, ZGm-neo and ZGs-neo) expressing a GFP marker-gene and a neomycin resistant gene based on PB. We co-transfected each donor vector with a helper vector (CAG-PBase). We found that ZGl-neo was the most efficient PB vector. This vector could insert into TTAA sites in DF-1 cells. PB vectors were microinjected into sub-germinal cavity of newly laid eggs, and electroporation was then performed with a 20-V pulse for 5 cycles of 50 ms on and 100 ms off. GFP was expressed in different tissues of the embryos, including the gonads. Twenty-two chickens hatched after microinjection with compounds ZGl-neo and CAG-PBase (3:1). When we screened the blood DNA, 73 % (16/22) of the individuals were positive. Thirteen of the chickens grew to adulthood, 11 of which were males. 40 % (4/10) of the individuals were semen positive, and their copy numbers ranged from 0.05 to 0.21 (0.11, 0.21, 0.05, 0.06). No G1 offspring containing the integrated transposon were produced. We conclude that the PB transposon system is a novel useful tool for the efficient production of transgenic chickens.

  19. Bac-to-Bac杆状病毒表达系统在BHK细胞表达鼠IL-2蛋白的研究%Bac-to-Bac Baculovirus Expression System in IL-2 Protein of BHK

    黄大林; 戴支凯; 王鑫; 李彬彬; 钟江


    目的:利用Bac-to-Bac杆状病毒表达系统在BHK细胞表达重组鼠白细胞介素(IL)-2蛋白.方法:用Flag标记鼠IL-2并加入真核细胞启动子CMV,构建重组质粒pFB-CMV-IL-2并予酶切和PCR鉴定;将鼠IL-2克隆入杆状病毒表达载体pFastBacDual中,将pFB-CMV-IL-2转化到含杆状病毒穿梭载体Bacmid的DH10Bac感受态菌中,筛选阳性克隆,获得重组杆状病毒载体Bacmid-pFB-CMV-IL-2,抽提质粒;用脂质体转染法将Bacmid-pFB-CMV-IL-2转染Sf9昆虫细胞包装病毒,收获重组杆状病毒,将构建病毒转导BHK细胞培养,用Western blot检测IL-2蛋白.结果:通过杆状病毒表达系统,在BHK细胞成功表达重组的鼠IL-2蛋白.结论:重组杆状病毒在真核细胞巾成功表达重组鼠IL-2蛋白.%Objective :To construct recombinant mouse IL-2 protein in BHK cells using Bac-to-Bac baculovirus expression system. Methods : The mouse IL-2 was marked by Flag, and joined the eukaryotic cell promoter CMV. The plasmid pFB-CMV-IL-2 was constructed to recombinant, restriction enzyme was used to digest, and was amplified by PCR. The mouse IL-2 was cloned into the baculovirus expression vector pFastBacDual and pFB-CMV-IL-2 was transformed into baculovirus shuttle vector containing the DH10Bac competent bacmid bacteria. The clones were recombinant baculovirus vector Bacmid-pFB-CMV-IL-2, extracted plasmid with Iiposome transfection method Bacmid-pFB-CMV-IL-2 transfected Sf9 insect cells packaging the virus, harvested recombinant baculovirus. A virus transduction of BHK cell culture was built using Western blot to detect the IL-2 protein. Results: By baculovirus expression system, mouse recombinant IL-2 protein was successfully expressed in BHK cells. Conclusion: Recombinant baculovirus was successfully expressed mouse IL-2 protein in eukaryotic cells.

  20. Comparative analysis of copy number detection by whole-genome BAC and oligonucleotide array CGH

    Bejjani Bassem A


    Full Text Available Abstract Background Microarray-based comparative genomic hybridization (aCGH is a powerful diagnostic tool for the detection of DNA copy number gains and losses associated with chromosome abnormalities, many of which are below the resolution of conventional chromosome analysis. It has been presumed that whole-genome oligonucleotide (oligo arrays identify more clinically significant copy-number abnormalities than whole-genome bacterial artificial chromosome (BAC arrays, yet this has not been systematically studied in a clinical diagnostic setting. Results To determine the difference in detection rate between similarly designed BAC and oligo arrays, we developed whole-genome BAC and oligonucleotide microarrays and validated them in a side-by-side comparison of 466 consecutive clinical specimens submitted to our laboratory for aCGH. Of the 466 cases studied, 67 (14.3% had a copy-number imbalance of potential clinical significance detectable by the whole-genome BAC array, and 73 (15.6% had a copy-number imbalance of potential clinical significance detectable by the whole-genome oligo array. However, because both platforms identified copy number variants of unclear clinical significance, we designed a systematic method for the interpretation of copy number alterations and tested an additional 3,443 cases by BAC array and 3,096 cases by oligo array. Of those cases tested on the BAC array, 17.6% were found to have a copy-number abnormality of potential clinical significance, whereas the detection rate increased to 22.5% for the cases tested by oligo array. In addition, we validated the oligo array for detection of mosaicism and found that it could routinely detect mosaicism at levels of 30% and greater. Conclusions Although BAC arrays have faster turnaround times, the increased detection rate of oligo arrays makes them attractive for clinical cytogenetic testing.

  1. Index of /data/mouse-b6n-bac-clone-db/20120215 [Life Science Database Archive metadata

    Full Text Available Index of /data/mouse-b6n-bac-clone-db/20120215 Name Last modified Size Description ...Parent Directory - README.html 02-Apr-2014 10:25 8.1K 15-Feb-2012 13:33 64M Index of /data/mouse-b6n-bac-clone-db/20120215 ...

  2. Spirocyclic Drimanes from the Marine Fungus Stachybotrys sp. Strain MF347

    Bin Wu


    Full Text Available A novel spirocyclic drimane coupled by two drimane fragment building blocks 2 and a new drimane 1 were identified in mycelia and culture broth of Stachybotrys sp. MF347. Their structures were established by spectroscopic means. This is the first example of spirocyclic drimane coupled by a spirodihydrobenzofuranlactam unit and a spirodihydroisobenzofuran unit; and the connecting position being N-C instead of an N and N connecting unit. Strain MF347 produced also the known spirocyclic drimanes stachybocin A (12 and stachybocin B (11 featured by two sesquiterpene-spirobenzofuran structural units connected by a lysine residue; the known spirocyclic drimanes chartarlactam O (5; chartarlactam K (6; F1839A (7; stachybotrylactam (8; stachybotramide (9; and 2α-acetoxystachybotrylactam acetate (10; as well as ilicicolin B (13, a known sesquiterpene. The relative configuration of two known spirobenzofuranlactams (3 and 4 was determined. All compounds were subjected to biological activity tests. The spirocyclic drimane 2, 11, and 12, as well as the sesquiterpene 13, exhibited antibacterial activity against the clinically relevant methicillin-resistant Staphylococcus aureus (MRSA.

  3. Impacts of Coagulation Pretreatment on MF Filtration and a Comparative Study of Different Membrane Module Types

    LIU Qi-feng; Kim Seung-hyun; Yun Jong-sup; Moon Seong-yong


    Changes in the regulatory requirements and the forthcoming Disinfectant/Disinfection By-Products (D/DBP)Rule will require that drinking water treatment facilities be operated to achieve maximum removals of particles and disinfectant tolerant microorganisms as well as natural organic matter (NOM). For drinking water production, the use of membrane filtration processes such as microfiltration and ultrafiltration (MF/UF) alone to satisfy the turbidity, particle and microorganism removal a requirement of the surface water treatment regulation (SWTR) is not enough. MF/UF treatment processes can achieve only nominal (10 percent) removal of disinfection by-products (DBP) precursors (James, et al., 1995). On the other hand, too fast fouling can make the filtration processes more difficult to carry on. To solve these problems, many authors have been interested in installing coagulation pretreatment before membrane filtration to improve membrane performance. However, previous studies reported conflicting results. Some supported the effectiveness of coagulation pretreatment, while others contended that coagulation aggravated membrane performance. This research aims to identify the effects of coagulation pretreatment on membrane filtration through a pilot study using PVDF membrane in combination with analyzing the rationale of coagulation. Another objective of this research was to evaluate the different impacts on membrane performance of using different membrane modules (the submerged module and pressured module). The results showed that coagulation pretreatment greatly improved the membrane performance, extending the filtration time as well as reducing the permeated organic level, and that the submerged module is much more efficient than the pressured module.

  4. Magnetoelastic effect in MF{sub 2} (M = Mn, Fe, Ni) investigated by neutron powder diffraction

    Chatterji, Tapan [JCNS, Forschungszentrum Juelich Outstation at Institut Laue-Langevin, BP 156, 38042 Grenoble Cedex 9 (France); Iles, Gail N; Ouladdiaf, Bachir; Hansen, Thomas C [Institut Laue-Langevin, BP 156, 38042 Grenoble Cedex 9 (France)


    We have investigated the magnetoelastic effects in MF{sub 2} (M = Mn, Fe, Ni) associated with the antiferromagnetic phase transition temperature T{sub N} by neutron powder diffraction. The temperature variation of the lattice parameters and the unit cell volume has been determined accurately with small temperature steps. From the temperature variation of the lattice parameters a, c and V the lattice strains {Delta}a, {Delta}c and {Delta}V associated with the antiferromagnetic phase transition have been extracted. Rietveld refinement of the crystal and magnetic structures from the diffraction data at low temperature gave a magnetic moment of 5.12 {+-} 0.09 {mu}{sub B}, 4.05 {+-} 0.05 {mu}{sub B} and 1.99 {+-} 0.05 {mu}{sub B} per Mn, Fe and Ni ions, respectively. The lattice strains {Delta}a, {Delta}c and {Delta}V couple linearly with the intensity of the 100 magnetic reflection, which is proportional to square of the order parameter of the antiferromagnetic phase transition. The volume strains in MF{sub 2} (M = Mn, Fe, Co, Ni) due to the magnetostriction vary smoothly along the transition metal series and seem to be correlated with the strength of the exchange interaction and the moments of the magnetic ions.

  5. MF-CAE: A Novel Lab on a Chip Simulation Tool

    Zeng, Yi; Mastrangelo, C. H.; Sun, Li

    The design of microfluidic systems with a large number of dynamic 011-chip components poses a challenge because today it is difficult to simulate time dependent transport of solvent and solutes through complex chips inclusive of dispersion and convection with low time-cost. Present approaches based on 3D C'FD tools are inadequate for system-level simulation. To address these needs, we propose a novel general simulation method for the approximate solution of linear and nonlinear, static and time-dependent solute and solvent transport in large chips with no need for analytical solution. Some design, modeling, and simulation features of a computer aided engineering tool for microfluidic systems called MF-CAE (Microfluidic CAE) are presented. The features include: an extensible modeling framework for computationally efficient lumped models; a flexible SPICE-like netlist language for microfluidic system design; a user friendly graphical user interface that allows users to quickly configure complex system; and a compact toolkit integrating design, simulation and data displaying. In this paper MF-CAE's architecture, reduced order modeling technique and design methodology are described. A comparison of behavior of microfluidic dilution networks indicates that the simulation results are in good agreement with the model simulations.

  6. Tempe consumption modulates fecal secondary bile acids, mucins, immunoglobulin A, enzyme activities, and cecal microflora and organic acids in rats.

    Utama, Zaki; Okazaki, Yukako; Tomotake, Hiroyuki; Kato, Norihisa


    The present study investigated the effect of dietary tempe, a fermented soy product, on the colonic environment of rats fed high-fat (HF, 30 % fat; experiment 1) or low-fat (LF, 6 % fat; experiment 2) diets. Growing male rats were fed the experimental diets with or without 25 % tempe for 21 days. Tempe consumption slightly but significantly increased the growth of rats fed both the HF and LF diets (P fecal secondary bile acid, lithocholic acid (a risk factor of colon cancer) (P fecal mucins (indices of intestinal barrier function) and immunoglobulin A (IgA, an index of intestinal immune function) (P Analysis of the profile of cecal microflora revealed lower Bacteroides and higher Clostridium cluster XIVa levels in the tempe group of rats fed the HF diet (P fecal activity of β-glucosidase was markedly higher in the tempe group (P < 0.05), while that of urease was lower (P < 0.05) with both the HF and LF diets. The present results suggest that tempe consumption modulates the colonic environment in rats.

  7. Les démographes et le temps Demographers and Time

    Olivia Samuel


    Full Text Available Cet article présente la façon dont les démographes ont pris en compte la question du temps dans leurs travaux depuis l’après seconde guerre. Le temps, dimension centrale de la démographie, est à la fois un élément constitutif des instruments de mesure des phénomènes démographiques et  un objet d’étude en soi. Les modalités de la prise en compte du temps ont considérablement évolué depuis les années 1950. L’approche synchronique, la plus fréquente alors, va être complétée par l’approche longitudinale, puis biographique et enfin multi-niveaux. A chacune de ces étapes, la question du temps (individuel ou collectif, de sa mesure et de sa signification, fait l’objet d’une réflexion qui rappellera la complexité de son appréhension. Après avoir mis en lumière ces étapes, l’article examine différents travaux démographiques qui ont pris le temps et les temporalités sociales comme objet d’étude, notamment au travers du repérage de l’âge, de l’appartenance générationnelle ou encore des marqueurs de transitions.This article shows how demographers have dealt with the question of time since WWII. Time, a central dimension of demography, has been both a tool for measuring demographic phenomena and an object of study in itself, and the ways it has been taken into account have considerably developed since the 1950s. The most usual point of view at the time, which was synchronic, was later to be completed by a longitudinal, then biographical and finally multi-faceted approach. At each of these stages, the question of time (individual or collective, as well as of how to measure it and how to evaluate its significance, came under more scrutiny, reminding use how complex an object it is to grasp. After a review of these various stages, the paper examines those demographic studies that have focused on time and social temporalities, particularly through the factors of age, generation or transition markers.

  8. Strategi Pemasaran Agroindustri Keripik Tempe di Desa Buluh Rampai Kecamatan Seberida Kabupaten Indragiri Hulu

    Nirmala Sari


    Full Text Available This study aimed to identify the aspects of the strengths, weaknesses, opportunities and threats facing the agroindustry marketing of Dua Putri tempe chips and formulate marketing strategies Dua Putri tempechips agroindustry by using SWOT analysis. The results showed that internal factors encountered in the marketing of Dua Putri tempeagro-chips in Indragiri Hulu is Strength: choose a label and branded products, entrepreneurs have a long experience, the product is attractive enough for all people, and the products do not use preservatives. Weakness: The product can be easily damaged and destroyed, packaging using a simple wrapper, product marketing has not come out Indragiri Hulu, and promotion is still limited. External factors include: Opportunities: products already well known, a product that can compete with similar products, the market is still wide open, the exhibition and promotion opportunities. Threat; Many competitors of similar products, the market demand fluctuates, and the limitations of market information and for marketing strategies Dua Putritempechips agroindustry is to maintain existing markets and seek new markets including exhibition, the exhibition is there to improve their skills in providing products with flavor worth nutrition, make packaging more attractive in order to reach the marketing of products inside and outside the district, improve the taste and quality and maximize promotion, looking for alternative marketing channels. Keywords: strategy, consumer, marketing, SWOTPenelitian ini bertujuan untuk mengidentifikasi aspek kekuatan, kelemahan, peluang dan ancaman yang dihadapi pemasaran agroindustri keripik tempe Dua Putri dan merumuskan strategi pemasaran agroindustri keripik tempe Dua Putri  dengan menggunakan analisis SWOT. Hasil penelitian menunjukkan bahwa faktor internal yang dihadapi dalam pemasaran agroindustri keripik tempe Dua Putri  di Indragiri Hulu adalah Kekuatan: memilih label dan produk bermerek

  9. Insertional mutagenesis by a hybrid piggyBac and sleeping beauty transposon in the rat.

    Furushima, Kenryo; Jang, Chuan-Wei; Chen, Diane W; Xiao, Ningna; Overbeek, Paul A; Behringer, Richard R


    A hybrid piggyBac/Sleeping Beauty transposon-based insertional mutagenesis system that can be mobilized by simple breeding was established in the rat. These transposons were engineered to include gene trap sequences and a tyrosinase (Tyr) pigmentation reporter to rescue the albinism of the genetic background used in the mutagenesis strategy. Single-copy transposon insertions were transposed into the rat genome by co-injection of plasmids carrying the transposon and RNA encoding piggyBac transposase into zygotes. The levels of transgenic Tyr expression were influenced by chromosomal context, leading to transgenic rats with different pigmentation that enabled visual genotyping. Transgenic rats designed to ubiquitously express either piggyBac or Sleeping Beauty transposase were generated by standard zygote injection also on an albino background. Bigenic rats carrying single-copy transposons at known loci and transposase transgenes exhibited coat color mosaicism, indicating somatic transposition. PiggyBac or Sleeping Beauty transposase bigenic rats bred with wild-type albino rats yielded offspring with pigmentation distinct from the initial transposon insertions as a consequence of germline transposition to new loci. The germline transposition frequency for Sleeping Beauty and piggyBac was ∼10% or about one new insertion per litter. Approximately 50% of the insertions occurred in introns. Chimeric transcripts containing endogenous and gene trap sequences were identified in Gabrb1 mutant rats. This mutagenesis system based on simple crosses and visual genotyping can be used to generate a collection of single-gene mutations in the rat.

  10. Sequencing, annotation and comparative analysis of nine BACs of giant panda (Ailuropoda melanoleuca).

    Zheng, Yang; Cai, Jing; Li, JianWen; Li, Bo; Lin, RunMao; Tian, Feng; Wang, XiaoLing; Wang, Jun


    A 10-fold BAC library for giant panda was constructed and nine BACs were selected to generate finish sequences. These BACs could be used as a validation resource for the de novo assembly accuracy of the whole genome shotgun sequencing reads of giant panda newly generated by the Illumina GA sequencing technology. Complete sanger sequencing, assembly, annotation and comparative analysis were carried out on the selected BACs of a joint length 878 kb. Homologue search and de novo prediction methods were used to annotate genes and repeats. Twelve protein coding genes were predicted, seven of which could be functionally annotated. The seven genes have an average gene size of about 41 kb, an average coding size of about 1.2 kb and an average exon number of 6 per gene. Besides, seven tRNA genes were found. About 27 percent of the BAC sequence is composed of repeats. A phylogenetic tree was constructed using neighbor-join algorithm across five species, including giant panda, human, dog, cat and mouse, which reconfirms dog as the most related species to giant panda. Our results provide detailed sequence and structure information for new genes and repeats of giant panda, which will be helpful for further studies on the giant panda.

  11. Inference of subgenomic origin of BACs in an interspecific hybrid sugarcane cultivar by overlapping oligonucleotide hybridizations.

    Kim, Changsoo; Robertson, Jon S; Paterson, Andrew H


    Sugarcane (Saccharum spp.) breeders in the early 20th century made remarkable progress in increasing yield and disease resistance by crossing Saccharum spontaneum L., a wild relative, to Saccharum officinarum L., a traditional cultivar. Modern sugarcane cultivars have approximately 71%-83% of their chromosomes originating from S. officinarum, approximately 10%-21% from S. spontaneum, and approximately 2%-13% recombinant or translocated chromosomes. In the present work, C(0)t-based cloning and sequencing (CBCS) was implemented to further explore highly repetitive DNA and to seek species-specific repeated DNA in both S. officinarum and S. spontaneum. For putatively species-specific sequences, overlappping oligonucleotide probes (overgos) were designed and hybridized to BAC filters from the interspecific hybrid sugarcane cultivar 'R570' to try to deduce parental origins of BAC clones. We inferred that 12 967 BACs putatively originated from S. officinarum and 5117 BACs from S. spontaneum. Another 1103 BACs were hybridized by both species-specific overgos, too many to account for by conventional recombination, thus suggesting ectopic recombination and (or) translocation of DNA elements. Constructing a low C(0)t library is useful to collect highly repeated DNA sequences and to search for potentially species-specific molecular markers, especially among recently diverged species. Even in the absence of repeat families that are species-specific in their entirety, the identification of localized variations within consensus sequences, coupled with the site specificity of short synthetic overgos, permits researchers to monitor species-specific or species-enriched variants.

  12. Sequencing,annotation and comparative analysis of nine BACs of the giant panda(Ailuropoda melanoleuca)


    A 10-fold BAC library for the giant panda was constructed and nine BACs were selected to generate finish sequences.These BACs could be used as a validation resource for the de novo assembly accuracy of the whole genome shotgun sequencing reads of the giant panda newly generated by Illumina GA sequencing technology.Complete Sanger sequencing,assembly,annotation and comparative analysis were carried out on the selected BACs of a joint length 878 kb.Homologue search and de novo prediction methods were used to annotate genes and repeats.Twelve protein coding genes were predicted,seven of which could be functionally annotated.The seven genes have an average gene size of about 41 kb,an average coding size of about 1.2 kb and an average exon number of 6 per gene.Besides,seven tRNA genes were found.About 27 percent of the BAC sequence is composed of repeats.A phylogenetic tree was constructed using a neighbor-join algorithm across five species,including the giant panda,human,dog,cat and mouse,which reconfirms dog as the most closely related species to the giant panda.Our results provide detailed sequence and structure information for new genes and repeats of the giant panda,which will be helpful for further studies about the giant panda.

  13. MRS培养基组分对Lactobacillus J23合成抗菌肽Bac-J23的影响%Effect of MRS medium components on bacteriocin Bac-J23 production from Lactobacillus J23

    易华西; 韩雪; 杜明; 张兰威


    The effect of MRS medium ingredient on the bacteriocin Bac-J23 produced by Lactobacillus J23 were studied. The results showed that 5g/L acetic acid sodium, sucrose and Yeast extraction could stimulate the growth of strain Lactobacillus J23 and induce Bac-J23 production. Higher concentration KH2PO4 (15g/L~20g/L) and 0.2g/L MgSO4 were propitious to Bac-J23 production, while MnSO4 and Tween-80 had no influence to the growth of Lactobacillus J23 and the production of Bac-J23.%研究了培养基MRS组分对乳酸菌Lactobacillus J23产生广谱抗菌肽Bac-J23的影响,并对其组成进行了优化.结果表明,当培养基中浓度为5g/L的乙酸钠对Bac-J23的合成具有刺激诱导作用,蔗糖对Bac-J23合成的最有利,酵母提取物对Lactobacillus J23的生长和Bac-J23的合成均具有明显的促进作用,KH2PO4(15g/L~20g/L)有利于Bac-J23的合成,MgSO4 (0.2g/L)对合成Bac-J23最有利,MnSO4和Tween-80对Bac-J23合成及Lactobacillus J23生长均没有明显影响.

  14. Expression of Five Endopolygalacturonase Genes and Demonstration that MfPG1 Overexpression Diminishes Virulence in the Brown Rot Pathogen Monilinia fructicola.

    Chien-Ming Chou

    Full Text Available Monilinia fructicola is a devastating pathogen on stone fruits, causing blossom blight and fruit rot. Little is known about pathogenic mechanisms in M. fructicola and related Monilinia species. In this study, five endopolygalacturonase (endo-PG genes were cloned and functionally characterized in M. fructicola. Quantitative reverse-transcriptase PCR (qRT-PCR revealed that the five MfPG genes are differentially expressed during pathogenesis and in culture under various pH regimes and carbon and nitrogen sources. MfPG1 encodes the major endo-PG and is expressed to significantly higher levels compared to the other four MfPGs in culture and in planta. MfPG1 function during pathogenesis was evaluated by examining the disease phenotypes and gene expression patterns in M. fructicola MfPG1-overexpressing strains and in strains carrying the β-glucuronidase (GUS reporter gene fused with MfPG1 (MfPG1-GUS. The MFPG1-GUS reporter was expressed in situ in conidia and hyphae following inoculation of flower petals, and qRT-PCR analysis confirmed MfPG1 expression during pathogenesis. MfPG1-overexpressing strains produced smaller lesions and higher levels of reactive oxygen species (ROS on the petals of peach and rose flowers than the wild-type strain, suggesting that MfPG1 affecting fungal virulence might be in part resulted from the increase of ROS in the Prunus-M. fructicola interactions.

  15. MF-RO深度处理印染废水的效果和回用%Effect of advanced treatment of wastewater for reuse with MF-RO

    邹勇斌; 颜幼平; 陈师楚; 陈志星; 陈鹏


    采用预处理+微滤(MF)+反渗透(RO)双膜技术深度处理印染废水.通过改变废水的温度、pH值、回用率和反渗透操作压力,分析相关因素对CODcr去除率和脱盐效果的影响.试验表明,优化的运行工况为:操作压力1.8 MPa,水温35℃,pH值6.0~10.0,回收率80%;此双膜法深度处理废水对CODcr的去除率和脱盐率分别达到97.4%和97.0%,浊度去除率接近100%,出水水质满足印染工艺回用要求.%Pretreatment + microfiltration + reverse osmosis technology is applied to dyeing effluents treatment. Factors exerting influence on the removal of CODCr and desalination results are discussed by changing temperature and pH value of dyeing effluents, recycling rate and operation pressure of reverse osmosis. The results show that the optimum operating conditions are as follows: operation pressure 1.8 Mpa, effluents temperature 35 ℃, pH value 6.0 ~ 10.0 and recovery rate 80%. The effluents after treatment can meet the reuse requirement with the removal of CODCr and desalination rate of 97.4% and 97% respectively, and the removal of turbidity closes to 100%.

  16. 蛇毒cystatin在Bac to Bac杆状病毒表达系统的表达与鉴定%Expression and Identification of Cystatin from Snake Venom in Bac-to-Bac Baculovirus Expression System

    张晓艳; 林旭; 林建银


    目的 探讨蛇毒cystatin在Bac to Bac杆状病毒表达系统中的表达.方法 PCR扩增蛇毒cystatin基因,将其克隆到pFastBacHTc中,通过转化E.Coli DH10Bac筛选克隆,抽提重组Bacmid/cystatin,后者经Cellfectin介导转染Sf9细胞,获取重组病毒,扩增病毒并感染Sf9细胞进行表达,SDS-PAGE、Western-blot分析鉴定表达蛋白66.结果 获得重组cystatin的杆状病毒,Sf9细胞能表达出与蛇毒cystatin单抗、5×His单抗结合的蛋白,相对分子质量约15 kD.结论 蛇毒cystatin在Bac to Bac杆状病毒表达系统中成功表达.

  17. Bac-to-Bac系统的研究进展及在家蚕中的应用%Advances and Application of Bac-to-Bac System in Bombyx mori

    吴小锋; 岳万福; 刘剑梅; 李广立; 缪云根



  18. Characterization of a putative pollen-specific arabinogalactan protein gene, BcMF8, from Brassica campestris ssp. chinensis.

    Huang, Li; Cao, Jia-Shu; Zhang, Ai-Hong; Ye, Yi-Qun


    The BcMF8 (Brassica campestris male fertility 8) gene, possessing the features of 'classical' arabinogalactan protein (AGP) was isolated from Brassica campestris L. ssp. chinensis, Makino syn. B. rapa L. ssp. chinensis. This gene was highly abundant in the fertile flower buds but silenced in the sterile ones of genic male sterile A/B line ('ZUBajh97-01A/B') in B. campestris. Expression patterns analysis suggested BcMF8 was a pollen-specific gene, whose transcript started to be expressed at the uninucleate stage and maintained throughout to the pollen at pollination stage. BcMF8 is highly homologous to the known pollen-specific AGP genes Sta 39-4 and Sta 39-3 from B. napus. Isolation and multiple alignment of the homologs of BcMF8 gene in the family Cruciferae indicated that BcMF8 was highly conserved in this family, which reflect the conservation in biological function and importance of this putative AGP gene in plant development. Similarity analysis also demonstrated Sta 39-4 and Sta 39-3 may originate from different genomes.

  19. CaMF2, an anther-specific lipid transfer protein (LTP) gene, affects pollen development in Capsicum annuum L.

    Chen, Changming; Chen, Guoju; Hao, Xuefeng; Cao, Bihao; Chen, Qinghua; Liu, Shaoqun; Lei, Jianjun


    Based on the gene differential expression analysis performed by cDNA-amplified fragment length polymorphism (cDNA-AFLP) in the genic male sterile-fertile line 114AB of Capsicum annuum L., a variety of differentially expressed cDNA fragments were detected in fertile or sterile lines. A transcript-derived fragment (TDF) specifically accumulated in the flower buds of fertile line was isolated, and the corresponding full-length cDNA and DNA were subsequently amplified. Bioinformatical analyses of this gene named CaMF2 showed that it encodes a lipid transfer protein with 94 amino acids. Spatial and temporal expression patterns analysis indicated that CaMF2 was an anther-specific gene and the expression of CaMF2 was detected only in flower buds at stage 3-7 of male fertile line with a peak expression at stage 4, but not detected in the roots, tender stems, fresh leaves, flower buds, open flowers, sepals, petals, anthers or pistils of male sterile line. Further, inhibition of the CaMF2 by virus-induced gene silencing (VIGS) method resulted in the low pollen germination ability and shriveled pollen grains. All these evidence showed that CaMF2 had a vital role in pollen development of C. annuum.

  20. Adsorption studies of a water soluble dye, Reactive Red MF-3B, using sonication-surfactant-modified attapulgite clay.

    Huang, Jianhua; Liu, Yuanfa; Jin, Qingzhe; Wang, Xingguo; Yang, Jun


    The removal of water-soluble Reactive Red MF-3B from aqueous media by sonication-surfactant-modified attapulgite clay was studied in a batch system. The surfactant used was octodecyl trimethyl ammonium chloride (OTMAC). Adsorbent characterizations were investigated using X-ray diffraction, infrared spectroscopy, and surface area analysis. The effects of pH, contact time, initial solute concentration, adsorbent dose, and temperature on the adsorption of Reactive Red MF-3B onto modified clay were investigated. On the basis of kinetic studies, specific rate constants involved in the processes were calculated and second-order adsorption kinetics was observed in the case. Film diffusion was found to be the rate-limiting step. Reactive Red MF-3B adsorption was found to increase with increase temperature. The Reactive Red MF-3B equilibrium adsorption data were fitted to Freundlich and Langmuir isotherm models, the former being found to provide the better fit of the experimental data. Thermodynamic parameters were calculated. From the results it can be concluded that the surfactant-modified clay could be a good adsorbent for treating Reactive Red MF-3B-contaminated waters.

  1. Status Quo of Twice Supplying Water for High Building and Antisepsis Effect of MF-2 Disinfector%高层建筑二次供水的现状及MF-2消毒剂的消毒效果

    刘庆增; 王金兰


    Objective To discuss status quo of twice supplying water for high building and validateantisepsis effect of MF - 2 disinfector. Methods By field test and searching reference, discussing thequestions of above - describe. According to state prescriptive method for disinfecting drinking water, vali-dating the antisepsis effect of disinfecting twice supplying water. Results Currently, establishment fortwice supplying water and the quality of the supplying water has some questions. According to the qualityof twice supplying water, acceding to some MF - 2 disinfector to disinfect, it will achieve the standard ofdrinking water. Conclusion Circumstance management department and sanitation supervise departmentshould smeliorate and manage the quality of twice supplying water, and insure the safety of using drinkingwater. So MF - 2 disinfector may replace contain chlorin disinfector to disinfect twice supplying water.

  2. Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences

    Talon Manuel


    Full Text Available Abstract Background Citrus species constitute one of the major tree fruit crops of the subtropical regions with great economic importance. However, their peculiar reproductive characteristics, low genetic diversity and the long-term nature of tree breeding mostly impair citrus variety improvement. In woody plants, genomic science holds promise of improvements and in the Citrus genera the development of genomic tools may be crucial for further crop improvements. In this work we report the characterization of three BAC libraries from Clementine (Citrus clementina, one of the most relevant citrus fresh fruit market cultivars, and the analyses of 46.000 BAC end sequences. Clementine is a diploid plant with an estimated haploid genome size of 367 Mb and 2n = 18 chromosomes, which makes feasible the use of genomics tools to boost genetic improvement. Results Three genomic BAC libraries of Citrus clementina were constructed through EcoRI, MboI and HindIII digestions and 56,000 clones, representing an estimated genomic coverage of 19.5 haploid genome-equivalents, were picked. BAC end sequencing (BES of 28,000 clones produced 28.1 Mb of genomic sequence that allowed the identification of the repetitive fraction (12.5% of the genome and estimation of gene content (31,000 genes of this species. BES analyses identified 3,800 SSRs and 6,617 putative SNPs. Comparative genomic studies showed that citrus gene homology and microsyntheny with Populus trichocarpa was rather higher than with Arabidopsis thaliana, a species phylogenetically closer to citrus. Conclusion In this work, we report the characterization of three BAC libraries from C. clementina, and a new set of genomic resources that may be useful for isolation of genes underlying economically important traits, physical mapping and eventually crop improvement in Citrus species. In addition, BAC end sequencing has provided a first insight on the basic structure and organization of the citrus genome and has

  3. Temps et usage du temps par les entrepreneurs algériens Time and its uses by Algerian entrepreneurs : between the celestial ideal and earthly realities

    Mohamed Madoui


    Full Text Available Cet article, s’appuyant sur une enquête qualitative conduite depuis 2002 en Kabylie (Algérie, a pour objectif d’analyser la gestion du temps par les entrepreneurs algériens à l’heure où le pays opère sa transition d’un modèle de développement fortement dirigiste à une économie de marché avec tout ce que cette mutation implique comme transformation dans les attitudes et les comportements sociaux des individus tant vis à vis du travail qu’à l’égard du temps. Les trente PME enquêtées montrent que la petite entreprise algérienne est confrontée à des conflits de temporalité entre les rythmes de la production industrielle et les prescriptions religieuses qui donnent lieu à une véritable négociation entre l’entrepreneur et ses salariés.Based on a qualitative investigation begun in 2002 in Kabylia (Algeria, this article aims to analyze how Algerian entrepreneurs manage time, while the country undergoes a transition from a planned to a market economy with all that this change implies in the way of transforming attitudes and the social behavior of individuals with respect to labor as well as with regard to time. The thirty Small and Middle-sized Businesses surveyed show that the small Algerian firm is confronted with temporality conflicts between the rythms of industrial production and the religious prescriptions, with the result that real negotiations have got under way between employer and employees.

  4. A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening

    Deal Karin R


    Full Text Available Abstract Background A five-dimensional (5-D clone pooling strategy for screening of bacterial artificial chromosome (BAC clones with molecular markers utilizing highly-parallel Illumina GoldenGate assays and PCR facilitates high-throughput BAC clone and BAC contig anchoring on a genetic map. However, this strategy occasionally needs manual PCR to deconvolute pools and identify truly positive clones. Results A new implementation is reported here for our previously reported clone pooling strategy. Row and column pools of BAC clones are divided into sub-pools with 1~2× genome coverage. All BAC pools are screened with Illumina's GoldenGate assay and the BAC pools are deconvoluted to identify individual positive clones. Putative positive BAC clones are then further analyzed to find positive clones on the basis of them being neighbours in a contig. An exhaustive search or brute force algorithm was designed for this deconvolution and integrated into a newly developed software tool, FPCBrowser, for analyzing clone pooling data. This algorithm was used with empirical data for 55 Illumina GoldenGate SNP assays detecting SNP markers mapped on Aegilops tauschii chromosome 2D and Ae. tauschii contig maps. Clones in single contigs were successfully assigned to 48 (87% specific SNP markers on the map with 91% precision. Conclusion A new implementation of 5-D BAC clone pooling strategy employing both GoldenGate assay screening and assembled BAC contigs is shown here to be a high-throughput, low cost, rapid, and feasible approach to screening BAC libraries and anchoring BAC clones and contigs on genetic maps. The software FPCBrowser with the integrated clone deconvolution algorithm has been developed and is downloadable at

  5. Development of one set of chromosome-specific microsatellite-containing BACs and their physical mapping in Gossypium hirsutum L.

    Wang, Kai; Guo, Wangzhen; Zhang, Tianzhen


    Fluorescence in situ hybridization (FISH), using bacterial artificial chromosome (BAC) clone as probe, is a reliable cytological technique for chromosome identification. It has been used in many plants, especially in those containing numerous small chromosomes. We previously developed eight chromosome-specific BAC clones from tetraploid cotton, which were used as excellent cytological markers for chromosomes identification. Here, we isolated the other chromosome-specific BAC clones to make a complete set for the identification of all 26 chromosome-pairs by this technology in tetraploid cotton (Gossypium hirsutum L.). This set of BAC markers was demonstrated to be useful to assign each chromosome to a genetic linkage group unambiguously. In addition, these BAC clones also served as convenient and reliable landmarks for establishing physical linkage with unknown targeted sequences. Moreover, one BAC containing an EST, with high sequence similarity to a G. hirsutum ethylene-responsive element-binding factor was located physically on the long arm of chromosome A7 with the help of a chromosome-A7-specific BAC FISH marker. Comparative analysis of physical marker positions in the chromosomes by BAC-FISH and genetic linkage maps demonstrated that most of the 26 BAC clones were localized close to or at the ends of their respective chromosomes, and indicated that the recombination active regions of cotton chromosomes are primarily located in the distal regions. This technology also enables us to make associations between chromosomes and their genetic linkage groups and re-assign each chromosome according to the corresponding genetic linkage group. This BAC clones and BAC-FISH technology will be useful for us to evaluate grossly the degree to which a linkage map provides adequate coverage for developing a saturated genetic map, and provides a powerful resource for cotton genomic researches.

  6. The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing

    Volckaert Filip AM


    Full Text Available Abstract Background Food supply from the ocean is constrained by the shortage of domesticated and selected fish. Development of genomic models of economically important fishes should assist with the removal of this bottleneck. European sea bass Dicentrarchus labrax L. (Moronidae, Perciformes, Teleostei is one of the most important fishes in European marine aquaculture; growing genomic resources put it on its way to serve as an economic model. Results End sequencing of a sea bass genomic BAC-library enabled the comparative mapping of the sea bass genome using the three-spined stickleback Gasterosteus aculeatus genome as a reference. BAC-end sequences (102,690 were aligned to the stickleback genome. The number of mappable BACs was improved using a two-fold coverage WGS dataset of sea bass resulting in a comparative BAC-map covering 87% of stickleback chromosomes with 588 BAC-contigs. The minimum size of 83 contigs covering 50% of the reference was 1.2 Mbp; the largest BAC-contig comprised 8.86 Mbp. More than 22,000 BAC-clones aligned with both ends to the reference genome. Intra-chromosomal rearrangements between sea bass and stickleback were identified. Size distributions of mapped BACs were used to calculate that the genome of sea bass may be only 1.3 fold larger than the 460 Mbp stickleback genome. Conclusions The BAC map is used for sequencing single BACs or BAC-pools covering defined genomic entities by second generation sequencing technologies. Together with the WGS dataset it initiates a sea bass genome sequencing project. This will allow the quantification of polymorphisms through resequencing, which is important for selecting highly performing domesticated fish.

  7. Size matters: versatile use of PiggyBac transposons as a genetic manipulation tool.

    Kim, Adele; Pyykko, Ilmari


    Transposons have been promising elements for gene integration, and the Sleeping Beauty (SB) system has been the major one for many years, although there have been several other transposon systems available, for example, Tol2. However, recently another system known as PiggyBac (PB) has been introduced and developed for fulfilling the same purposes, for example, mutagenesis, transgenesis and gene therapy and in some cases with improved transposition efficiency and advantages over the Sleeping Beauty transposon system, although improved hyperactive transposase has highly increased the transposition efficacy for SB. The PB systems have been used in many different scientific research fields; therefore, the purpose of this review is to describe some of these versatile uses of the PiggyBac system to give readers an overview on the usage of PiggyBac system.

  8. Construction and characterization of bacterial artificial chromosomes (BACs) containing herpes simplex virus full-length genomes.

    Nagel, Claus-Henning; Pohlmann, Anja; Sodeik, Beate


    Bacterial artificial chromosomes (BACs) are suitable vectors not only to maintain the large genomes of herpesviruses in Escherichia coli but also to enable the traceless introduction of any mutation using modern tools of bacterial genetics. To clone a herpes simplex virus genome, a BAC replication origin is first introduced into the viral genome by homologous recombination in eukaryotic host cells. As part of their nuclear replication cycle, genomes of herpesviruses circularize and these replication intermediates are then used to transform bacteria. After cloning, the integrity of the recombinant viral genomes is confirmed by restriction length polymorphism analysis and sequencing. The BACs may then be used to design virus mutants. Upon transfection into eukaryotic cells new herpesvirus strains harboring the desired mutations can be recovered and used for experiments in cultured cells as well as in animal infection models.

  9. Application of the BacT/ALERTR 3D system for sterility testing of injectable products

    Adriana Bugno


    Full Text Available Sterility testing as described in the pharmacopoeia compendia requires a 14-day incubation period to obtain an analytical result. Alternative methods that could be applied to evaluating product sterility are especially interesting due to the possibility of reducing this incubation period and thus the associated costs. The aims of this study were to evaluate the performance of the BacT/ALERTR 3D system in detecting microorganisms in large-volume parenteral solutions that were intentionally contaminated and to compare this system to pharmacopoeia sterility testing using the membrane filtration method. The results indicated that there were no significant differences between the methods regarding the ability to detect microbial contamination; however, detection with the BacT/ALERTR 3D system was faster compared to the pharmacopoeia method. Therefore, the BacT/ALERTR 3D system is a viable alternative for assessing the sterility of injectable products.

  10. Regard sur Le Temps des grâces, de Dominique Marchais A look at Le temps des grâces by Dominique Marchais Una mirada a Le temps des grâces, de Dominique Marchais

    Christèle Dondeyne


    Full Text Available Le documentaire Le Temps des grâces de Dominique Marchais s’attache aux regards que des agriculteurs de différentes générations portent sur leur activité et aux analyses d’agronomes et d’économistes sur l’agriculture française. Il donne à voir quelques unes des multiples façons dont le travail agricole modèle les paysages et les écosystèmes et souligne le poids des politiques publiques dans ces orientations. Son constat global laisse plus de place à une industrialisation de l’agriculture qui conduit à l’uniformisation des produits et à la mort des sols qu’à des alternatives viables pour les écosystèmes. La confrontation de ce documentaire avec des travaux majeurs de la sociologie sur ce thème produit une impression de décalage et renvoie à des réflexions théoriques et méthodologiques.Dominique Marchais’ documentary, Le Temps des grâces, deals with different farmer generations’ vision of their work. It also provides an agronomic and economic analysis of French farming, showing some of the many different ways in which agricultural activity shapes landscape and ecosystems, while stressing the responsibility of public policy in such processes. The general observation highlights the growing industrialisation of agriculture, leading more to the uniformisation of products and destruction of soil fertility than to ecologically viable alternatives. When compared with major sociological studies in this area, the documentary highlights certain deviations while referring to theoretical and methodological thinking in this domain.En su documental Le Temps des grâces, Dominique Marchais se interesa en la visión que agricultores de diferentes generaciones tienen de su quehacer y en algunos análisis de la agricultura francesa realizados por agrónomos y economistas. Su trabajo permite vislumbrar algunas de las múltiples formas en que el trabajo agrícola modela los paisajes y los ecosistemas, y hace hincapié en el

  11. The Adelaide MF partial-reflection radar and VHF ST radar

    Vincent, R. A.


    The microwave frequency (MF) partial-reflection radar ran continuously since November 1983, with data being analyzed in real time. The spaced antenna technique was used routinely to produce a climatology of the mean circulation, atmospheric tides, and gravity waves. Since the beginning of 1985, the system was also used as a Doppler radar to measure the spectral widths of the mesospheric echoes. This has enabled the turbulence dissipation rates to be determined. The Stratosphere-Troposphere (ST) radar was operated in the spaced antenna mode to measure winds in November 1984, in conjunction with a cooperative campaign to study the propagation of cold fronts across SE Australia. Observations were also performed to study the structure of the more intense and deeper cold fronts, which occur in late winter.

  12. MF radar observations of the diurnal tide over Syowa, Antarctica (69° S, 40° E

    Y. Tomikawa


    Full Text Available Characteristics of the diurnal tide in the Antarctic mesosphere and lower thermosphere (MLT are investigated using 10 years of medium frequency (MF radar data from Syowa Station (69° S, 39.6° E. Seasonal variations and height dependence of the diurnal amplitude and phase of zonal and meridional winds are mostly consistent with previous studies using the other Antarctic station data. The meridional momentum flux due to the diurnal tide shows a seasonal variation clearly different between above and below 90 km, which has never been reported in the literature. Finally, a cause of some discrepancy in the characteristics of the diurnal tide between the observation and simulation (i.e., GSWM-02 is discussed. It implies that the realistic representation of gravity waves in the simulation is crucial for realistic modeling of the diurnal tide.

  13. Performance of MF-MSK Systems with Pre-distortion Schemes

    Gergis, Labib Francis


    Efficient RF power amplifiers used in third generation systems require linearization in order to reduce adjacent channel inter-modulation distortion, without sacrificing efficiency. Digital baseband predistortion is a highly cost-effective way to linearize power amplifiers (PAs). New communications services have created a demand for highly linear high power amplifiers (HPA's). Traveling Wave Tubes Amplifiers (TWTA) continue to offer the best microwave HPA performance in terms of power efficiency, size and cost, but lag behind Solid State Power Amplifiers (SSAP's) in linearity. This paper presents a technique for improving TWTA linearity. The use of predistorter (PD) linearization technique is described to provide TWTA performance comparable or superior to conventional SSPA's. The characteristics of the PD scheme is derived based on the extension of Saleh's model for HPA. The analysis results of Multi-frequency Minimum Shift Keying (MF-MSK) in non-linear channels are presented in this paper.

  14. Asymmetric MF-DCCA method based on risk conduction and its application in the Chinese and foreign stock markets

    Cao, Guangxi; Han, Yan; Li, Qingchen; Xu, Wei


    The acceleration of economic globalization gradually shows the linkage of the stock markets in various counties and produces a risk conduction effect. An asymmetric MF-DCCA method is conducted based on the different directions of risk conduction (DMF-ADCCA) and by using the traditional MF-DCCA. To ensure that the empirical results are more objective and robust, this study selects the stock index data of China, the US, Germany, India, and Brazil from January 2011 to September 2014 using the asymmetric MF-DCCA method based on different risk conduction effects and nonlinear Granger causality tests to study the asymmetric cross-correlation between domestic and foreign stock markets. Empirical results indicate the existence of a bidirectional conduction effect between domestic and foreign stock markets, and the greater influence degree from foreign countries to domestic market compared with that from the domestic market to foreign countries.

  15. A BAC-based physical map of Zhikong scallop (Chlamys farreri Jones et Preston.

    Xiaojun Zhang

    Full Text Available Zhikong scallop (Chlamys farreri is one of the most economically important aquaculture species in China. Physical maps are crucial tools for genome sequencing, gene mapping and cloning, genetic improvement and selective breeding. In this study, we have developed a genome-wide, BAC-based physical map for the species. A total of 81,408 clones from two BAC libraries of the scallop were fingerprinted using an ABI 3130xl Genetic Analyzer and a fingerprinting kit developed in our laboratory. After data processing, 63,641 (∼5.8× genome coverage fingerprints were validated and used in the physical map assembly. A total of 3,696 contigs were assembled for the physical map. Each contig contained an average of 10.0 clones, with an average physical size of 490 kb. The combined total physical size of all contigs was 1.81 Gb, equivalent to approximately 1.5 fold of the scallop haploid genome. A total of 10,587 BAC end sequences (BESs and 167 markers were integrated into the physical map. We evaluated the physical map by overgo hybridization, BAC-FISH (fluorescence in situ hybridization, contig BAC pool screening and source BAC library screening. The results have provided evidence of the high reliability of the contig physical map. This is the first physical map in mollusc; therefore, it provides an important platform for advanced research of genomics and genetics, and mapping of genes and QTL of economical importance, thus facilitating the genetic improvement and selective breeding of the scallop and other marine molluscs.

  16. GISH and BAC-FISH study of apomictic Beta M14

    GE Yan; HE GuangChun; WANG ZhiWei; GUO DeDong; QIN Rui; LI RongTian


    Apomixis is a means of asexual reproduction by which plants produce embryos without fertilization and meiosis, therefore the embryo is of clonal and maternal origin. Interspecific hybrids between diploid B. vulgaris (2n=2x=18) and tetraploid B. corolliflora (2n=4x=36) were established, and then backcrossed with B. vulgaris. Among their offspring, monosomic addition line M14 (2n=2x=18+1) was selected because of the apomictic phenotype. We documented chromosome transmission from B. corolliflora into M14 by using genomic in situ hybridization (GISH). Suppression of cross-hybridization by blocking DNA was not necessary, indicating that the investigated Beta genome contains sufficient species-specific DNA, thus enabling the determination of genomic composition of the hybrids. We analyzed BAC microarrays of B. corolliflora chromosome 9 by using fluorescence-specific mRNA of B.vulgaris and Beta M14. BAC clones 16-M11 and 26-L15 were detected as fluorescence-specifics of BAC DNA of Beta M14. Then both BAC clones 16-M11 and 26-L15 were in situ hybridized to M14 chromosomes. The two hybridized BAC clones were located close to the telomere region of the long arm of a single chromosome 9, and showed hemizygosity. The results of BAC microarrays showed that these developments of embryo and endosperm have conservative expression patterns, indicating that sexual reproduction and apomixis have an interrelated pathway with common regulatory components and that the induction of a modified sexual reproduction program may enable the manifestation of apomixis in Beta species. It would be sufficient for the expression of apomixes with those apomictic-specific genes on chromosome 9 of B. corolliflora.

  17. GISH and BAC-FISH study of apomictic Beta M14


    Apomixis is a means of asexual reproduction by which plants produce embryos without fertilization and meiosis,therefore the embryo is of clonal and maternal origin.Interspecific hybrids between dip-loid B.vulgaris(2n=2x=18)and tetraploid B.corolliflora(2n=4x=36)were established,and then back-crossed with B.vulgaris.Among their offspring,monosomic addition line M14(2n=2x=18+1)was se-lected because of the apomictic phenotype.We documented chromosome transmission from B.corol-liflora into M14 by using genomic in situ hybridization(GISH).Suppression of cross-hybridization by blocking DNA was not necessary,indicating that the investigated Beta genome contains sufficient species-specific DNA,thus enabling the determination of genomic composition of the hybrids.We analyzed BAC microarrays of B.corolliflora chromosome 9 by using fluorescence-specific mRNA of B.vulgaris and Beta M14.BAC clones 16-M11 and 26-L15 were detected as fluorescence-specifics of BAC DNA of Beta M14.Then both BAC clones 16-M11 and 26-L15 were in situ hybridized to M14 chromo-somes.The two hybridized BAC clones were located close to the telomere region of the long arm of a single chromosome 9,and showed hemizygosity.The results of BAC microarrays showed that these developments of embryo and endosperm have conservative expression patterns,indicating that sexual reproduction and apomixis have an interrelated pathway with common regulatory components and that the induction of a modified sexual reproduction program may enable the manifestation of apomixis in Beta species.It would be sufficient for the expression of apomixes with those apomictic-specific genes on chromosome 9 of B.corolliflora.

  18. Post-integration silencing of piggyBac transposable elements in Aedes aegypti.

    Azhahianambi Palavesam

    Full Text Available The piggyBac transposon, originating in the genome of the Lepidoptera Trichoplusia ni, has a broad host range, making it useful for the development of a number of transposon-based functional genomic technologies including gene vectors, enhancer-, gene- and protein-traps. While capable of being used as a vector for the creation of transgenic insects and insect cell lines, piggyBac has very limited mobility once integrated into the genome of the yellow fever mosquito, Aedes aegypti. A transgenic Aedes aegypti cell line (AagPB8 was created containing three integrated piggyBac elements and the remobilization potential of the elements was tested. The integrated piggyBac elements in AagPB8 were transpositionally silent in the presence of functional transposase, which was shown to be capable of catalyzing the movement of plasmid-borne piggyBac elements in the same cells. The structural integrity of one of the integrated elements along with the quality of element-flanking DNA, which is known to influence transposition rates, were tested in D. melanogaster. The element was found to be structurally intact, capable of transposition and excision in the soma and germ-line of Drosophila melanogaster, and in a DNA sequence context highly conducive to element movement in Drosophila melanogaster. These data show that transpositional silencing of integrated piggyBac elements in the genome of Aedes aegypti appears to be a function of higher scale genome organization or perhaps epigenetic factors, and not due to structural defects or suboptimal integration sites.

  19. Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones.

    Wild, Jadwiga; Hradecna, Zdenka; Szybalski, Waclaw


    The widely used, very-low-copy BAC (bacterial artificial chromosome) vectors are the mainstay of present genomic research. The principal advantage of BACs is the high stability of inserted clones, but an important disadvantage is the low yield of DNA, both for vectors alone and when carrying genomic inserts. We describe here a novel class of single-copy/high-copy (SC/HC) pBAC/oriV vectors that retain all the advantages of low-copy BAC vectors, but are endowed with a conditional and tightly controlled oriV/TrfA amplification system that allows: (1) a yield of ~100 copies of the vector per host cell when conditionally induced with L-arabinose, and (2) analogous DNA amplification (only upon induction and with copy number depending on the insert size) of pBAC/oriV clones carrying >100-kb inserts. Amplifiable clones and libraries facilitate high-throughput DNA sequencing and other applications requiring HC plasmid DNA. To turn on DNA amplification, which is driven by the oriV origin of replication, we used copy-up mutations in the gene trfA whose expression was very tightly controlled by the araC-P(araBAD) promoter/regulator system. This system is inducible by L-arabinose, and could be further regulated by glucose and fucose. Amplification of DNA upon induction with L-arabinose and its modulation by glucose are robust and reliable. Furthermore, we discovered that addition of 0.2% D-glucose to the growth medium helped toward the objective of obtaining a real SC state for all BAC systems, thus enhancing the stability of their maintenance, which became equivalent to cloning into the host chromosome

  20. Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice.

    Jakse, Jernej; Telgmann, Alexa; Jung, Christian; Khar, Anil; Melgar, Sergio; Cheung, Foo; Town, Christopher D; Havey, Michael J


    The Poales (includes the grasses) and Asparagales [includes onion (Allium cepa L.) and asparagus (Asparagus officinalis L.)] are the two most economically important monocot orders. The Poales are a member of the commelinoid monocots, a group of orders sister to the Asparagales. Comparative genomic analyses have revealed a high degree of synteny among the grasses; however, it is not known if this synteny extends to other major monocot groups such as the Asparagales. Although we previously reported no evidence for synteny at the recombinational level between onion and rice, microsynteny may exist across shorter genomic regions in the grasses and Asparagales. We sequenced nine asparagus BACs to reveal physically linked genic-like sequences and determined their most similar positions in the onion and rice genomes. Four of the asparagus BACs were selected using molecular markers tightly linked to the sex-determining M locus on chromosome 5 of asparagus. These BACs possessed only two putative coding regions and had long tracts of degenerated retroviral elements and transposons. Five asparagus BACs were selected after hybridization of three onion cDNAs that mapped to three different onion chromosomes. Genic-like sequences that were physically linked on the cDNA-selected BACs or genetically linked on the M-linked BACs showed significant similarities (e < -20) to expressed sequences on different rice chromosomes, revealing no evidence for microsynteny between asparagus and rice across these regions. Genic-like sequences that were linked in asparagus were used to identify highly similar (e < -20) expressed sequence tags (ESTs) of onion. These onion ESTs mapped to different onion chromosomes and no relationship was observed between physical or genetic linkages in asparagus and genetic linkages in onion. These results further indicate that synteny among grass genomes does not extend to a sister order in the monocots and that asparagus may not be an appropriate smaller genome

  1. Bioreactor scale up and protein product quality characterization of piggyBac transposon derived CHO pools.

    Rajendra, Yashas; Balasubramanian, Sowmya; Peery, Robert B; Swartling, James R; McCracken, Neil A; Norris, Dawn L; Frye, Christopher C; Barnard, Gavin C


    Chinese hamster ovary (CHO) cells remain the most popular host for the production of biopharmaceutical drugs, particularly monoclonal antibodies (mAbs), bispecific antibodies, and Fc-fusion proteins. Creating and characterizing the stable CHO clonally-derived cell lines (CDCLs) needed to manufacture these therapeutic proteins is a lengthy and laborious process. Therefore, CHO pools have increasingly been used to rapidly produce protein to support and enable preclinical drug development. We recently described the generation of CHO pools yielding mAb titers as high as 7.6 g/L in a 16 day bioprocess using piggyBac transposon-mediated gene integration. In this study, we wanted to understand why the piggyBac pool titers were significantly higher (2-10 fold) than the control CHO pools. Higher titers were the result of a combination of increased average gene copy number, significantly higher messenger RNA levels and the homogeneity (i.e. less diverse population distribution) of the piggyBac pools, relative to the control pools. In order to validate the use of piggyBac pools to support preclinical drug development, we then performed an in-depth product quality analysis of purified protein. The product quality of protein obtained from the piggyBac pools was very similar to the product quality profile of protein obtained from the control pools. Finally, we demonstrated the scalability of these pools from shake flasks to 36L bioreactors. Overall, these results suggest that gram quantities of therapeutic protein can be rapidly obtained from piggyBac CHO pools without significantly changing product quality attributes. © 2017 American Institute of Chemical Engineers Biotechnol. Prog., 33:534-540, 2017. © 2017 American Institute of Chemical Engineers.

  2. Steroid-regulated growth of DDT1MF-2 cells is profoundly influenced by culture conditions.

    Lamb, D J; Ray, M


    DDT1MF-2 cells provide an ideal model for studying tumor-growth-stimulation by steroids. These cells progress to a rapidly proliferating, androgen-independent state after prolonged culture without androgen. After brief culture in different lots of fetal bovine serum (FBS), some lots induced a permanent state of hormone-independence in cells that had been androgen-responsive. To test the hypothesis that factors influenced androgen-responsive growth even after removal of serum, hormone-responsive DDT1MF-2 cells (7000 cells/well) were plated in medium Dulbecco's Modified Eagle Medium/F-12 Nutrition Mixture (1:1)/1% ITS with (a) 0.1% FBS, (b) 0.1% NuSerum (c) 0.1% Hyclone, or (d) MCDB-110/0.1% ITS with 5 ng/ml bFGF. On Days 2-8, medium was replaced with D-MEM/F12/ITS with 10 nM testosterone (T), 10 nM triamcinolone acetonide (TA), or ethanol (control) and the cells counted. While testosterone induced a 1.4-fold increase in cell growth after exposure to FBS or NuSerum, maximal testosterone effect (3-6-fold increase) was observed after Hyclone. Hydroxyflutamide antagonized the fivefold increase in growth observed with testosterone, with a slight decrease of growth with cAMP for cells plated in Hyclone. Androgen-independent cells were unaffected by testosterone, hydroxyflutamide, or 8Br-cAMP [medium (a)]. Maximal inhibition by triamcinolone acetonide (0.25 of control) was observed with medium (d). The effect of testosterone and triamcinolone acetonide on secretion of mitogenic activity into conditioned medium was also evaluated. Although conditioned media from control and testosterone-treated cells were mitogenic in a dose-dependent manner, the media from cells treated with triamcinolone acetonide and testosterone+TA conditioned medium was not mitogenic--but, of note, it was not growth inhibitory.

  3. The complexity of Rhipicephalus (Boophilus microplus genome characterised through detailed analysis of two BAC clones

    Valle Manuel


    Full Text Available Abstract Background Rhipicephalus (Boophilus microplus (Rmi a major cattle ectoparasite and tick borne disease vector, impacts on animal welfare and industry productivity. In arthropod research there is an absence of a complete Chelicerate genome, which includes ticks, mites, spiders, scorpions and crustaceans. Model arthropod genomes such as Drosophila and Anopheles are too taxonomically distant for a reference in tick genomic sequence analysis. This study focuses on the de-novo assembly of two R. microplus BAC sequences from the understudied R microplus genome. Based on available R. microplus sequenced resources and comparative analysis, tick genomic structure and functional predictions identify complex gene structures and genomic targets expressed during tick-cattle interaction. Results In our BAC analyses we have assembled, using the correct positioning of BAC end sequences and transcript sequences, two challenging genomic regions. Cot DNA fractions compared to the BAC sequences confirmed a highly repetitive BAC sequence BM-012-E08 and a low repetitive BAC sequence BM-005-G14 which was gene rich and contained short interspersed elements (SINEs. Based directly on the BAC and Cot data comparisons, the genome wide frequency of the SINE Ruka element was estimated. Using a conservative approach to the assembly of the highly repetitive BM-012-E08, the sequence was de-convoluted into three repeat units, each unit containing an 18S, 5.8S and 28S ribosomal RNA (rRNA encoding gene sequence (rDNA, related internal transcribed spacer and complex intergenic region. In the low repetitive BM-005-G14, a novel gene complex was found between to 2 genes on the same strand. Nested in the second intron of a large 9 Kb papilin gene was a helicase gene. This helicase overlapped in two exonic regions with the papilin. Both these genes were shown expressed in different tick life stage important in ectoparasite interaction with the host. Tick specific sequence

  4. Drink-driving convictions and the effect of lowering the BAC levels

    Christoffersen, Mogens

    Driving while impaired (DWI) is a factor behind one in four fatal automobile crashes and one in six motoring casualties each year in Denmark. Drink driving is especially a problem for young men. The most important legal initiative has been lowering the blood-alcohol content (BAC) limit from 0.8‰ ...... young people, the attributable-fraction and counter factual reductions of the known risk factors is estimated on the basis of a discrete time Cox model. Lowering the BAC-level in 1998 was not followed by an expected significant reduction in DWIconvictions. The overall risk of DWI...

  5. An abbreviated version of the brief assessment of cognition in schizophrenia (BACS

    MD Yasuhiro Kaneda


    Full Text Available Background and Objectives: A short version of the Brief Assessment of Cognition in Schizophrenia (BACS was derived. Methods: We calculated the corrected item-total correlation (CITC for each test score relative to the composite score, and then computed the proportion of variance that each test shares with the global score excluding that test (Rt² = CITCt² and the variance explained per minute of administration time for each test (Rt²/mint. Results and Conclusions: The 3 tests with the highest Rt²/mint, Symbol Coding, Digit Sequencing, and Token Motor, were selected for the Abbreviated BACS.


    Sufiati Bintanah


    Full Text Available Abstrak Di Indonesia terjadi perubahan pola penyakit dari infeksi dan kekurangan gizi ke degeneratif dan kanker akibat perubahan gaya hidup dan pola makan  tinggi lemak dan rendah serat serta modernisasi pola hidup. Tempe kedelai merupakan bahan makanan yang dapat menurunkan trigliserida, kolesterol total, kolesterol LDL, serta meningkatkan kolesterol HDL. Bekatul juga merupakan bahan makanan yang dapat menurunkan kadar lemak darah karena mengandung oryzanol, tokoferol, dan asam felurat. Tujuan dari penelitian ini adalah untuk menyeleksi formula nugget berdasarkan karakteristik fisik, kimia dan organoleptik serta aktifitas antioksidan. Jenis penelitian ini adalah penelitian diskriptif dengan perlakuan formulasi tepung tempe dan tepung ricebran sebanyak 10 formula. Analisis komposisi kimia dilakukan terhadap bahan mentah dan nugget meliputi analisis protein (mikro kjedhl, lemak (soxhlet, air (oven, karbohidrat (Luff Schoorl l, penetapan kadar Vitamin E (Alfa-Tokoferol, analisa aktivitas anti bakteri metode difusi agar. Pengujian organoleptik menggunakan metode scoring. Hasil menunjukkan nugget dengan formula tepung tempe 50% dan tepung bekatul 50% (formula A7, mempunyai komposisi kimia terbaik yaitu protein 19,5g%, lemak 18.33g%, air 35.59%, abu 1,62%, serat kasar 9,57g%, Karbohidrat 25,41 g%, Vitamin E 148,92 µg/g, aktifitas antioksidan 197,1 µg/ml. Hasil pengujian organoleptik terhadap warna, rasa, aroma maupun tekstur yang paling disuka pada formula A7. Kesimpulan: Optimasi tepung tempe dan rice bran yang diterima berdasarkan sifat fisik, organoleptik dan analisa zat gizi adalah dengan perlakuan sangrai 20 menit. Formula nugget yang optimum A7 dengan perbandingan tepung tempe dan rice bran 50:50 g. Kata Kunci: Komposisi Kimia, Organoleptik, Formula Nugget, Tepung Tempe, Ricebran Abstract In Indonesia, there has been a changing disease pattern from infectious and food deficiency diseases to degenerative and cancerous diseases. Soy bean cake

  7. Serial Peripheral Interface Communication Between MCU EM78P447A and RF Reader IC MF RC530

    YOU Zhi; CHEN Shu-zhen; HUANG Ji-wu


    A significant method in the way the MCU EM78P447A manipulates the RF reader IC MF RC530's functions used in RF IC card application is presented. In this paper, RF reader IC MF RC530's SPI compatible interface is introduced. The kernel technologies including SPI connection, software design,register initiation, request-response between the reader IC and the MCU, authentication and the proper format of the key are explained. Adopting the serial peripheral interface is the innovation in the paper. The SPI communication mode proves feasible and precise. Furthermore, in the way we avoid the abuse of parallel interface.

  8. PetIGA-MF: a multi-field high-performance toolbox for structure-preserving B-splines spaces

    Sarmiento, A.F.


    We describe a high-performance solution framework for isogeometric discrete differential forms based on B-splines: PetIGA-MF. Built on top of PetIGA, an open-source library we have built and developed over the last decade, PetIGA-MF is a general multi-field discretization tool. To test the capabilities of our implementation, we solve different viscous flow problems such as Darcy, Stokes, Brinkman, and Navier-Stokes equations. Several convergence benchmarks based on manufactured solutions are presented assuring optimal convergence rates of the approximations, showing the accuracy and robustness of our solver.

  9. Improving the comparative map of SSC2p-q13 by sample sequencing of BAC clones

    Rattink, A.P.; Jungerius, B.J.; Faivre, M.; Chardon, P.; Harlizius, B.; Groenen, M.A.M.


    To improve the comparative map for pig chromosome 2 and increase the gene density on this chromosome, a porcine bacterial artificial chromosome (BAC) library was screened with 17 microsatellite markers and 18 genes previously assigned to pig chromosome 2. Fifty-one BAC clones located in the region o

  10. 对话,卡奇社与Tizzy Bac:他们都是玩音乐的人


    @@ Tizzy Bac 连续两年的春天,都有一支来自台湾的乐队,用他们的音乐来熄灭我内心的躁动与不安,他们就是Tizzy Bac,两个男人,加上一个不愿意当花瓶的女主意.

  11. Localization and Characterization of 170 BAC-derived clones and mapping of Ninety-Four Microsatellites in the Hessian Fly

    Ninety-four microsatellites from enriched genomic libraries of Hessian fly (Mayetiola destructor (Say)) were localized to 170 cognate clones in a Hessian fly bacterial artificial chromosome (BAC) library. These microsatellite-positive BAC clones were physically mapped to polytene chromosomes by fl...

  12. Internalization of a thiazole-modified peptide in Sinorhizobium meliloti occurs by BacA-dependent and -independent mechanisms.

    Wehmeier, Silvia; Arnold, Markus F F; Marlow, Victoria L; Aouida, Mustapha; Myka, Kamila K; Fletcher, Vivien; Benincasa, Monica; Scocchi, Marco; Ramotar, Dindial; Ferguson, Gail P


    BacA proteins play key roles in the chronic intracellular infections of Sinorhizobium meliloti, Brucella abortus and Mycobacterium tuberculosis within their respective hosts. S. meliloti, B. abortus and M. tuberculosis BacA-deficient mutants have increased resistance to the thiazole-modified peptide bleomycin. BacA has been previously hypothesized, but not experimentally verified, to be involved in bleomycin uptake. In this paper, we show that a BacA-dependent mechanism is the major route of bleomycin internalization in S. meliloti. We also determined that the B. abortus and S. meliloti BacA proteins are functional homologues and that the B. abortus BacA protein is involved in the uptake of both bleomycin and proline-rich peptides. Our findings also provide evidence that there is a second, BacA-independent minor mechanism for bleomycin internalization in S. meliloti. We determined that the BacA-dependent and -independent mechanisms of bleomycin uptake are energy-dependent, consistent with both mechanisms of bleomycin uptake involving transport systems.

  13. Gros temps

    Jean Marie Théodat


    Full Text Available Ce sixième cahier paraît à un moment où « l’immense orgue des vents grondeurs » cher à Baudelaire fait rage dans les finances du pays le plus puissant de la planète. Les turbulences provoquées par l’explosion de la bulle financière américaine entraînent un déséquilibre mondial qui va demander des réajustements structurels et profonds dans le modèle de développement du pays le plus riche. Les fondements même de l’économie libérale se trouvent ébranlés dans le pays qui en a fait son credo et so...

  14. La PCR quantitative en temps réel : application à la quantification des OGM

    Alary Rémi


    Full Text Available Suite à l’obligation d’étiquetage, au seuil de 1 %, des aliments contenant des OGM autorisés, il est nécessaire de disposer de méthodes fiables de quantification. Pour répondre à cette obligation, la technique de PCR quantitative en temps réel semble actuellement la mieux adaptée. Son principe, ses avantages et sa mise en oeuvre pour la détermination de la teneur en OGM de farines de soja sont présentés. Les PCR simplex et duplex sont comparées.

  15. LHC 2008 talks Peut-on voyager dans le temps? (Is time travel possible?)


    Scientific magazines (and sometimes even scientists themselves) regularly talk about the possibility of travelling through time. It has also been the subject of many science-fiction novels. We will first discuss what we mean when we talk about time travel, then explain what contemporary physics has to say about it. Thursday, 12 June 2008 at 8.00 p.m. Peut-on voyager dans le temps ? Etienne Klein Physicist at CEA and Doctor of Philosophy of Science The Globe, first floor No specialist knowledge required. Entrance free.


    Almasyhuri Almasyhuri


    Full Text Available Telah dilakukan penelitian tentang pengaruh perebusan dan perendaman serta fermentasi kacang-kacangan terhadap kandungan asam fitat dan tanin. Kacang-kacangan yang diteliti sebanyak delapan macam, yaitu kacang kedelai, kacang gude, kecipir, koro benguk, kacang merah, kacang tolo, koro wedus dan lamtoro gung. Penentuan asam fitat dilakukan dengan cara tidak langsung, dimana asam fitat diubah menjadi feri-fitat, kemudian kadar besinya ditetapkan dengan spektrofotometri. Sedangkan kadar tanin ditetapkan dengan metoda Folin-Denis. Diperoleh hasil bahwa perebusan dan perendaman pada proses pembuatan tempe dapat menurunkan asam fitat dan tanin, tetapi tidak sampai menghilangkannya. Sementara fermentasi dapat menyebabkan penurunan asam fitat, namun sebaliknya meningkatkan kandungan tanin.

  17. Le droit à disposer de son temps. Manifeste pour les politiques temporelles territoriales Il diritto a disporre del proprio tempo. Un manifesto per le politiche tempo-territoriali

    Chris Beyer


    Full Text Available Bien que les individus des sociétés modernes occidentales aient pour la plupart davantage de temps disponible et accès à des moyens de mobilités performants, ils éprouvent des difficultés croissantes dans leurs gestions du temps et de l'espace et notamment en termes d'articulation entre les différents temps et espaces sociaux. Les individus luttent pour réduire la pression temporelle au sein d'emploi du temps à flux tendus de plus en plus individualisés.

  18. Comparison of simulations of land-use specific water demand and irrigation water supply by MF-FMP and IWFM

    Schmid, Wolfgang; Dogural, Emin; Hanson, Randall T.; Kadir, Tariq; Chung, Francis


    Two hydrologic models, MODFLOW with the Farm Process (MF-FMP) and the Integrated Water Flow Model (IWFM), are compared with respect to each model’s capabilities of simulating land-use hydrologic processes, surface-water routing, and groundwater flow. Of major concern among the land-use processes was the consumption of water through evaporation and transpiration by plants. The comparison of MF-FMP and IWFM was conducted and completed using a realistic hypothetical case study. Both models simulate the water demand for water-accounting units resulting from evapotranspiration and inefficiency losses and, for irrigated units, the supply from surface-water deliveries and groundwater pumpage. The MF-FMP simulates reductions in evapotranspiration owing to anoxia and wilting, and separately considers land-use-related evaporation and transpiration; IWFM simulates reductions in evapotranspiration related to the depletion of soil moisture. The models simulate inefficiency losses from precipitation and irrigation water applications to runoff and deep percolation differently. MF-FMP calculates the crop irrigation requirement and total farm delivery requirement, and then subtracts inefficiency losses from runoff and deep percolation. In IWFM, inefficiency losses to surface runoff from irrigation and precipitation are computed and subtracted from the total irrigation and precipitation before the crop irrigation requirement is estimated. Inefficiency losses in terms of deep percolation are computed simultaneously with the crop irrigation requirement. The seepage from streamflow routing also is computed differently and can affect certain hydrologic settings and magnitudes ofstreamflow infiltration. MF-FMP assumes steady-state conditions in the root zone; therefore, changes in soil moisture within the root zone are not calculated. IWFM simulates changes in the root zone in both irrigated and non-irrigated natural vegetation. Changes in soil moisture are more significant for non

  19. 基于MF-RC500射频卡读写系统设计%Design of RF Card Read-write System Based on MF-RC500

    郭国法; 淡丹; 张开生


    针对射频卡的读写系统,采用STC89S52为主控芯片,研究了MF-RC500的射频卡读写系统设计方法,通过RS232为数据传输接口连接上位机以及键盘来构建一种适用于各个应用场合的非接触式IC卡读写系统,程序中利用单片机的低功耗模式达到系统节能降耗的目的。实验表明,基于MF-RC500射频卡读写系统设计运行稳定,切实可行。%TO radio frequency (RF) card read-write system,the main control chip of STC89S52 is adopted and the design method of RF card read-write system based on MF-RC500 is researched. Through RS232 interface for data transmission to connect PC and keyboard ,a kind of non-contact IC card read-write system adapting to the various applications is built ,using low power mode of microcontroller to achieve the purpose of system energy saving. Experiments show that the RF card reader based on MF-RC500 system running well, is feasible.

  20. Validation of the French version of the BACS (the brief assessment of cognition in schizophrenia) among 50 French schizophrenic patients.

    Bralet, Marie-Cécile; Falissard, Bruno; Neveu, Xavier; Lucas-Ross, Margaret; Eskenazi, Anne-Marie; Keefe, Richard S E


    Schizophrenic patients demonstrate impairments in several key dimensions of cognition. These impairments are correlated with important aspects of functional outcome. While assessment of these cognition disorders is increasingly becoming a part of clinical and research practice in schizophrenia, there is no standard and easily administered test battery. The BACS (Brief Assessment of Cognition in Schizophrenia) has been validated in English language [Keefe RSE, Golberg TE, Harvey PD, Gold JM, Poe MP, Coughenour L. The Brief Assessment of Cognition in Schizophrenia: reliability, sensibility, and comparison with a standard neurocognitive battery. Schizophr. Res 2004;68:283-97], and was found to be as sensitive to cognitive dysfunction as a standard battery of tests, with the advantage of requiring less than 35 min to complete. We developed a French adaptation of the BACS and this study tested its ease of administration and concurrent validity. Correlation analyses between the BACS (version A) and a standard battery were performed. A sample of 50 stable schizophrenic patients received the French Version A of the BACS in a first session, and in a second session a standard battery. All the patients completed each of the subtests of the French BACS . The mean duration of completion for the BACS French version was 36 min (S.D.=5.56). A correlation analysis between the BACS (version A) global score and the standard battery global score showed a significant result (r=0.81, pBACS (version A) sub-scores and the standard battery sub-scores showed significant results for verbal memory, working memory, verbal fluency, attention and speed of information processing and executive functions (pBACS is easier to use in French schizophrenic patients compared to a standard battery (administration shorter and completion rate better) and its good psychometric properties suggest that the French Version of the BACS may be a useful tool for assessing cognition in schizophrenic patients with

  1. BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping

    A bacterial artificial chromosome (BAC) library and BAC-end sequences for Gossypium hirsutum L. have recently been developed. Here we report on genomic-based genome-wide SNP mining utilizing re-sequencing data with a BAC-end sequence reference for twelve G. hirsutum L. lines, one G. barbadense L. li...

  2. A PiggyBac-mediated approach for muscle gene transfer or cell therapy

    Déborah Ley


    Full Text Available An emerging therapeutic approach for Duchenne muscular dystrophy is the transplantation of autologous myogenic progenitor cells genetically modified to express dystrophin. The use of this approach is challenged by the difficulty in maintaining these cells ex vivo while keeping their myogenic potential, and ensuring sufficient transgene expression following their transplantation and myogenic differentiation in vivo. We investigated the use of the piggyBac transposon system to achieve stable gene expression when transferred to cultured mesoangioblasts and into murine muscles. Without selection, up to 8% of the mesoangioblasts expressed the transgene from 1 to 2 genomic copies of the piggyBac vector. Integration occurred mostly in intergenic genomic DNA and transgene expression was stable in vitro. Intramuscular transplantation of mouse Tibialis anterior muscles with mesoangioblasts containing the transposon led to sustained myofiber GFP expression in vivo. In contrast, the direct electroporation of the transposon-donor plasmids in the mouse Tibialis muscles in vivo did not lead to sustained transgene expression despite molecular evidence of piggyBac transposition in vivo. Together these findings provide a proof-of-principle that piggyBac transposon may be considered for mesoangioblast cell-based therapies of muscular dystrophies.

  3. Insect transformation with piggyBac: getting the number of injections just right.

    Gregory, M; Alphey, L; Morrison, N I; Shimeld, S M


    The insertion of exogenous genetic cargo into insects using transposable elements is a powerful research tool with potential applications in meeting food security and public health challenges facing humanity. piggyBac is the transposable element most commonly utilized for insect germline transformation. The described efficiency of this process is variable in the published literature, and a comprehensive review of transformation efficiency in insects is lacking. This study compared and contrasted all available published data with a comprehensive data set provided by a biotechnology group specializing in insect transformation. Based on analysis of these data, with particular focus on the more complete observational data from the biotechnology group, we designed a decision tool to aid researchers' decision-making when using piggyBac to transform insects by microinjection. A combination of statistical techniques was used to define appropriate summary statistics of piggyBac transformation efficiency by species and insect order. Publication bias was assessed by comparing the data sets. The bias was assessed using strategies co-opted from the medical literature. The work culminated in building the Goldilocks decision tool, a Markov-Chain Monte-Carlo simulation operated via a graphical interface and providing guidance on best practice for those seeking to transform insects using piggyBac.

  4. Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus

    Lindblad-Toh Kerstin


    Full Text Available Abstract Background The Nile tilapia is the second most important fish in aquaculture. It is an excellent laboratory model, and is closely related to the African lake cichlids famous for their rapid rates of speciation. A suite of genomic resources has been developed for this species, including genetic maps and ESTs. Here we analyze BAC end-sequences to develop comparative physical maps, and estimate the number of genome rearrangements, between tilapia and other model fish species. Results We obtained sequence from one or both ends of 106,259 tilapia BACs. BLAST analysis against the genome assemblies of stickleback, medaka and pufferfish allowed identification of homologies for approximately 25,000 BACs for each species. We calculate that rearrangement breakpoints between tilapia and these species occur about every 3 Mb across the genome. Analysis of 35,000 clones previously assembled into contigs by restriction fingerprints allowed identification of longer-range syntenies. Conclusions Our data suggest that chromosomal evolution in recent teleosts is dominated by alternate loss of gene duplicates, and by intra-chromosomal rearrangements (~one per million years. These physical maps are a useful resource for comparative positional cloning of traits in cichlid fishes. The paired BAC end sequences from these clones will be an important resource for scaffolding forthcoming shotgun sequence assemblies of the tilapia genome.

  5. BAC and Beer: Operationalizing Drunk Driving Laws in a Research Methods Course Exercise.

    Taylor, Ralph B.; McConnell, Patrick


    Focuses on an exercise utilized in a research methods class and based on social problems that invites student interest. Explains the exercise has students determine their blood alcohol level (BAC) by asking them to estimate the number of beers it would take to have them just reach driving under the influence (DUI) status. (CMK)

  6. A BAC transgenic Hes1-EGFP reporter reveals novel expression domains in mouse embryos

    Klinck, Rasmus; Füchtbauer, Ernst-Martin; Ahnfelt-Rønne, Jonas;


    of progenitor cells, but increasing evidence also points to Notch independent regulation of Hes1 expression. Here we use high resolution confocal scanning of EGFP in a novel BAC transgenic mouse reporter line, Tg(Hes1-EGFP)(1Hri), to analyse Hes1 expression from embryonic day 7.0 (e7.0). Our data recapitulates...

  7. Bacterial delivery of large intact genomic-DNA-containing BACs into mammalian cells.

    Cheung, Wing; Kotzamanis, George; Abdulrazzak, Hassan; Goussard, Sylvie; Kaname, Tadashi; Kotsinas, Athanassios; Gorgoulis, Vassilis G; Grillot-Courvalin, Catherine; Huxley, Clare


    Efficient delivery of large intact vectors into mammalian cells remains problematical. Here we evaluate delivery by bacterial invasion of two large BACs of more than 150 kb in size into various cells. First, we determined the effect of several drugs on bacterial delivery of a small plasmid into different cell lines. Most drugs tested resulted in a marginal increase of the overall efficiency of delivery in only some cell lines, except the lysosomotropic drug chloroquine, which was found to increase the efficiency of delivery by 6-fold in B16F10 cells. Bacterial invasion was found to be significantly advantageous compared with lipofection in delivering large intact BACs into mouse cells, resulting in 100% of clones containing intact DNA. Furthermore, evaluation of expression of the human hypoxanthine phosphoribosyltransferase (HPRT) gene from its genomic locus, which was present in one of the BACs, showed that single copy integrations of the HPRT-containing BAC had occurred in mouse B16F10 cells and that expression of HPRT from each human copy was 0.33 times as much as from each endogenous mouse copy. These data provide new evidence that bacterial delivery is a convenient and efficient method to transfer large intact therapeutic genes into mammalian cells.

  8. A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison)

    Benkel, Bernhard F.; Smith, Amanda; Christensen, Knud;


    In this report we present the results of the analysis of approximately 2.7 Mb of genomic information for the American mink (Neovison vison) derived through BAC end sequencing. Our study, which encompasses approximately 1/1000th of the mink genome, suggests that simple sequence repeats (SSRs...

  9. Bacterial delivery of large intact genomic-DNA-containing BACs into mammalian cells

    Cheung, Wing; Kotzamanis, George; Abdulrazzak, Hassan; Goussard, Sylvie; Kaname, Tadashi; Kotsinas, Athanassios; Gorgoulis, Vassilis G.; Grillot-Courvalin, Catherine; Huxley, Clare


    Efficient delivery of large intact vectors into mammalian cells remains problematical. Here we evaluate delivery by bacterial invasion of two large BACs of more than 150 kb in size into various cells. First, we determined the effect of several drugs on bacterial delivery of a small plasmid into different cell lines. Most drugs tested resulted in a marginal increase of the overall efficiency of delivery in only some cell lines, except the lysosomotropic drug chloroquine, which was found to increase the efficiency of delivery by 6-fold in B16F10 cells. Bacterial invasion was found to be significantly advantageous compared with lipofection in delivering large intact BACs into mouse cells, resulting in 100% of clones containing intact DNA. Furthermore, evaluation of expression of the human hypoxanthine phosphoribosyltransferase (HPRT) gene from its genomic locus, which was present in one of the BACs, showed that single copy integrations of the HPRT-containing BAC had occurred in mouse B16F10 cells and that expression of HPRT from each human copy was 0.33 times as much as from each endogenous mouse copy. These data provide new evidence that bacterial delivery is a convenient and efficient method to transfer large intact therapeutic genes into mammalian cells. PMID:22095052

  10. BacHBerry:: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

    Dudnik, Alexey; Almeida, A. Filipa; Andrade, Ricardo


    BACterial Hosts for production of Bioactive phenolics from bERRY fruits (BacHBerry) was a 3-year project funded by the Seventh Framework Programme (FP7) of the European Union that ran between November 2013 and October 2016. The overall aim of the project was to establish a sustainable and economi...

  11. BAC and Beer: Operationalizing Drunk Driving Laws in a Research Methods Course Exercise.

    Taylor, Ralph B.; McConnell, Patrick


    Focuses on an exercise utilized in a research methods class and based on social problems that invites student interest. Explains the exercise has students determine their blood alcohol level (BAC) by asking them to estimate the number of beers it would take to have them just reach driving under the influence (DUI) status. (CMK)

  12. Comparison of Transformation Efficiency of piggyBac Transposon among Three Different Silkworm Bombyx mori Strains

    Boxiong ZHONG; Jianying LI; Jin'e CHEN; Jian YE; Songdong YU


    The transformation rate of three different strains of silkworm Bombyx mori was compared after the introduction of enhanced green fluorescence protein (EGFP)-encoding genes into the silkworm eggs by microinjection of a mixture of piggyBac vector and helper plasmid containing a transposase-encoding sequence. Although there were no significant differences among the three strains in the percentages of fertile moths in microinjected eggs (P=0.1258), the percentages of Go transformed moths in fertile moths and injected eggs were both significantly different (P=0.01368 and P=0.02398, respectively). The transformation rate of the Nistari strain (Indian strain) was significantly higher than that of the other two strains, Golden-yellow-cocoon (Vietnamese strain) and Jiaqiu (Chinese strain), which had similar rate. These results indicate that the transformation efficiency of the piggyBac-based system might vary with silkworm strains with different genetic backgrounds. The presence of endogenous piggyBac-like elements might be an important factor influencing the transformation efficiency of introduced piggyBac-derived vectors, and the diverse amount and activation in different silkworm strains might account for the significant differences.

  13. Assembly and sorting of homologous BAC contigs in allotetraploid cotton genomes

    Upland cotton (G. hirsutum) is a diploidized allopolyploid species containing At and Dt sub-genomes that have partial homology. Assembly and sorting of homologous BAC contigs into their subgenomes and further to individual chromosomes are of both great interest and great challenge for genome-wide i...

  14. Isolation of Specific Clones from Nonarrayed BAC Libraries through Homologous Recombination

    Mikhail Nefedov


    Full Text Available We have developed a new approach to screen bacterial artificial chromosome (BAC libraries by recombination selection. To test this method, we constructed an orangutan BAC library using an E. coli strain (DY380 with temperature inducible homologous recombination (HR capability. We amplified one library segment, induced HR at 42∘C to make it recombination proficient, and prepared electrocompetent cells for transformation with a kanamycin cassette to target sequences in the orangutan genome through terminal recombineering homologies. Kanamycin-resistant colonies were tested for the presence of BACs containing the targeted genes by the use of a PCR-assay to confirm the presence of the kanamycin insertion. The results indicate that this is an effective approach for screening clones. The advantage of recombination screening is that it avoids the high costs associated with the preparation, screening, and archival storage of arrayed BAC libraries. In addition, the screening can be conceivably combined with genetic engineering to create knockout and reporter constructs for functional studies.

  15. [Assessment of the MF59-adjuvanted pandemic influenza A/H1N1 vaccine. Systematic review of literature].

    Ruiz-Aragón, J; Grande Tejada, A M; Márquez-Peláez, S; Molina Linde, J M; Yang, R


    To assess the efficacy and safety of MF59-adjuvanted pandemic influenza A/H1N1 vaccine in children. A systematic review of the literature was performed after searching the MedLine and Embase electronic databases, and manual search in specialties journals, with MeSH terms and and free terms. Inclusion criteria were clinical trials with children vaccinated with MF59-adjuvanted influenza A/H1N1 vaccine, compared with other vaccines doses with/without MF59-adjuvanted. The immunogenicity and safety of the vaccine was recorded. The quality of the studies included was assessed by CASPe checklist. Four clinical trials with moderate quality were selected. The local and systemic adverse effects were rare and mild, with no differences between groups. Seroconversion and seroprotection levels were higher with MF59-adjuvanted vaccines. Antibody titres were also higher with the adjuvant vaccines. The adjuvant vaccine has a good efficacy and safety profile. The adverse effects that may occur are common and appear similarly in both vaccination groups. Copyright © 2012 Asociación Española de Pediatría. Published by Elsevier Espana. All rights reserved.

  16. Detection of early functional changes in diabetic retina using slow double-stimulation mfERG paradigm.

    Chan, Henry Ho-lung; Chu, Patrick Ho-wai; Lung, Jenny Chun-yee; Ho, Wing-cheung; Ting, Patrick Wai-ki; Sum, Rita Wing-man; Ng, Yiu-fai


    Aim Diabetes mellitus (DM) is a systemic disease with insufficient secretion of insulin or poor response to insulin. This typically causes poor control of blood glucose level leading to a range of complications. Early detection of the retinal function alteration in DM is needed. Methods A newly modified paradigm-slow double-stimulation multifocal electroretinogram (mfERG)-was introduced to measure early changes of retinal function in DM and to investigate changes in the adaptation mechanisms in the diabetic retina. The mfERG was measured by using a slow double-stimulation mfERG paradigm (M(1)M(2)OOO). Results The m1 amplitude of M(1) stimulation from diabetic subjects was significantly reduced in ring 1 in contrast to that of a control group. The m2 amplitude of M(2) stimulation from diabetic subjects was also significantly reduced in ring 1 and 2 as compared with those of the control group. The m1/m2 ratio which minimises intersubject variation shows a reasonable differentiation between the control and diabetic groups. There was a significant increase in the amplitude ratio from diabetic subjects in ring 2 and 3 as compared with those of the control group. Conclusions The present findings suggest that the new mfERG paradigm is a fast and sensitive test for the detection of early functional changes in the diabetic retina.

  17. MF/UF rejection and fouling potential of algal organic matter from bloom-forming marine and freshwater algae

    Villacorte, Loreen O.


    Pretreatment with microfiltration (MF) or ultrafiltration (UF) membranes has been proposed for seawater reverse osmosis (SWRO) plants to address operational issues associated with algal blooms. Here, we investigated the MF/UF rejection and fouling potential of algal organic matter (AOM) released by common species of bloom-forming marine (Alexandrium tamarense and Chaetoceros affinis) and freshwater (Microcystis sp.) algae. Batch culture monitoring of the three algal species illustrated varying growth pattern, cell concentration, AOM released and membrane fouling potential. The high membrane fouling potential of the cultures can be directly associated (R2>0.85) with AOM such as transparent exopolymer particle (TEP) while no apparent relationship with algal cell concentration was observed. The AOM comprised mainly biopolymers (e.g., polysaccharides and proteins) and low molecular weight organic compounds (e.g., humic-like substances). The former were largely rejected by MF/UF membranes while the latter were poorly rejected. MF (0.4μm and 0.1μm pore size) rejected 14%-56% of biopolymers while conventional UF (100kDa) and tight UF (10kDa) rejected up to 83% and 97%, respectively. The retention of AOM resulted in a rapid increase in trans-membrane pressure (δP) over time, characterised by pore blocking followed by cake filtration with enhanced compression as illustrated by an exponential progression of δP. © 2015 Elsevier B.V.




    Voltage-dependent inward and outward membrane currents were investigated in the DDT1 MF-2 smooth muscle cell line using the whole-cell patch-clamp technique. Application of a pulse protocol with subsequent depolarizing voltage steps elicited an inactivating inward current and a non-inactivating outw

  19. L'antimatière la matière qui remonte le temps

    Chardin, Gabriel


    Si un monde de matière rencontrait un monde d’antimatière, on assisterait à une conflagration d’une extrême violence ! L’antimatière apparaît dans la théorie quantique comme une matière « miroir » selon les transformations de l’espace et de la charge, ou selon celle du temps. Pourquoi la nature a-t-elle créé ce monde miroir du nôtre ? L’Univers contient-il autant de matière que d’antimatière ? Où donc est passée toute l’antimatière qui était présente au début de l’Univers et pourquoi en a-t-on perdu la trace ? Dans cet ouvrage, qui fait référence, Gabriel Chardin nous aide à approcher cette « matière qui remonte le temps » !

  20. Temps et œuvres Time and Creation. In Search of the Fifth Season

    Jean-Marc Ramos


    Full Text Available Le travail créateur serait une façon de « prendre position par rapport au temps » (Lamblin. Cet argument tiré de la critique picturale est d’abord soumis à l’expertise psychologique (Fraisse, Michon. Il est ensuite mis à l’épreuve de l’esthétique du dérèglement et de son application à la poésie. Ce qui conduit à opposer Arthur Rimbaud (1854-1891 à Jean-Marie Guyau (1854-1888 sur les formes littéraires de la représentation du temps.Creative work is a way to “take a stand against time” (Lamblin Drawn from pictorial criticism, this argument is first subjected to psychological evaluation (Fraisse, Michon. It is then tested by the aesthetics of disorder and its application to poetry. This led to oppose Arthur Rimbaud (1854-1891 and Jean-Marie Guyau (1854-1888 on literary forms of the representation of time.

  1. Dalla frase proustiana all'immagine-movimento: Le temps retrouvé di Raoul Ruiz

    Emanuela Piga


    Full Text Available Nel 1999 esce nelle sale Le Temps retrouvé del regista cileno Raoul Ruiz, il quale, affiancato dallo sceneggiatore Gilles Taurand, mette in scena l'ultimo volume de La Recherche du temps perdu di Marcel Proust.Poiché gran parte dei giudizi negativi che seguirono l'opera di Ruiz partirono dall'assunto dell'intraducibilità della poetica della Recherche in un'opera cinematografica, questo studio mira a comprendere la relazione che il testo filmico  stabilisce con il testo letterario. In quest'ottica, lo studio si focalizza su alcune soluzioni formali adottate dal regista, partendo dall'idea che queste scelte siano alla base del tentativo di trasposizione, sul piano del contenuto e dell'espressione, della "qualità di visione" di Marcel Proust, di difficile transcodificazione per raffinatezza concettuale e linguistica e densità narrativa. Nell'indagare la relazione traduttiva e le forme dell'espressione concretizzate nel testo d'arrivo, particolare interesse sarà riservato al movimento: i movimenti di macchina e i movimenti nel quadro, i movimenti degli oggetti e i movimenti dei personaggi. Movimenti in orbita all'interno del movimento più grande e incessante della memoria e di quell'immagine-movimento che è il piano.  

  2. Genomic tools development for Aquilegia: construction of a BAC-based physical map

    Hodges Scott A


    Full Text Available Abstract Background The genus Aquilegia, consisting of approximately 70 taxa, is a member of the basal eudicot lineage, Ranuculales, which is evolutionarily intermediate between monocots and core eudicots, and represents a relatively unstudied clade in the angiosperm phylogenetic tree that bridges the gap between these two major plant groups. Aquilegia species are closely related and their distribution covers highly diverse habitats. These provide rich resources to better understand the genetic basis of adaptation to different pollinators and habitats that in turn leads to rapid speciation. To gain insights into the genome structure and facilitate gene identification, comparative genomics and whole-genome shotgun sequencing assembly, BAC-based genomics resources are of crucial importance. Results BAC-based genomic resources, including two BAC libraries, a physical map with anchored markers and BAC end sequences, were established from A. formosa. The physical map was composed of a total of 50,155 BAC clones in 832 contigs and 3939 singletons, covering 21X genome equivalents. These contigs spanned a physical length of 689.8 Mb (~2.3X of the genome suggesting the complex heterozygosity of the genome. A set of 197 markers was developed from ESTs induced by drought-stress, or involved in anthocyanin biosynthesis or floral development, and was integrated into the physical map. Among these were 87 genetically mapped markers that anchored 54 contigs, spanning 76.4 Mb (25.5% across the genome. Analysis of a selection of 12,086 BAC end sequences (BESs from the minimal tiling path (MTP allowed a preview of the Aquilegia genome organization, including identification of transposable elements, simple sequence repeats and gene content. Common repetitive elements previously reported in both monocots and core eudicots were identified in Aquilegia suggesting the value of this genome in connecting the two major plant clades. Comparison with sequenced plant genomes

  3. Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

    Kudrna David


    Full Text Available Abstract Background Eucalyptus species are among the most planted hardwoods in the world because of their rapid growth, adaptability and valuable wood properties. The development and integration of genomic resources into breeding practice will be increasingly important in the decades to come. Bacterial artificial chromosome (BAC libraries are key genomic tools that enable positional cloning of important traits, synteny evaluation, and the development of genome framework physical maps for genetic linkage and genome sequencing. Results We describe the construction and characterization of two deep-coverage BAC libraries EG_Ba and EG_Bb obtained from nuclear DNA fragments of E. grandis (clone BRASUZ1 digested with HindIII and BstYI, respectively. Genome coverages of 17 and 15 haploid genome equivalents were estimated for EG_Ba and EG_Bb, respectively. Both libraries contained large inserts, with average sizes ranging from 135 Kb (Eg_Bb to 157 Kb (Eg_Ba, very low extra-nuclear genome contamination providing a probability of finding a single copy gene ≥ 99.99%. Libraries were screened for the presence of several genes of interest via hybridizations to high-density BAC filters followed by PCR validation. Five selected BAC clones were sequenced and assembled using the Roche GS FLX technology providing the whole sequence of the E. grandis chloroplast genome, and complete genomic sequences of important lignin biosynthesis genes. Conclusions The two E. grandis BAC libraries described in this study represent an important milestone for the advancement of Eucalyptus genomics and forest tree research. These BAC resources have a highly redundant genome coverage (> 15×, contain large average inserts and have a very low percentage of clones with organellar DNA or empty vectors. These publicly available BAC libraries are thus suitable for a broad range of applications in genetic and genomic research in Eucalyptus and possibly in related species of Myrtaceae

  4. Les fondements de la mesure du temps comment les fréquences atomiques règlent le monde

    Audoin, Claude


    La mesure du temps fondée sur des propriétés atomiques est née en 1955, avec le premier étalon de fréquence à jet de césium. Depuis, les horloges atomiques ne cessent de progresser et sont au coeur de nombreuses activités, telles que les comparaisons de temps, l'unification mondiale de l'heure ou la recherche en astronomie, géodésie, géophysique, télécommunications, etc. Cet ouvrage fournira des réponses détaillées au lecteur intéressé par la mesure du temps appliquée aux divers domaines cités.

  5. Estimation of electron density in ionospheric D and E regions using MF radar: Inspection of DAE algorism

    Ashihara, Y.; Miyake, T.; Ishisaka, K.; Murayama, Y.; Kawamura, S.; Nagano, I.; Okada, T.


    MF radar estimates the electron density in lower ionospheric D and E regions at the altitude from 60km to 100km by using the partial reflection information of MF radar transmission wave. Though, the electron density in ionospheric D region is very small, about 10-1000 /cc, electrons are closely related to neutral dynamic meteorology and chemistry including such as hydrated ion and NOx in the region. Therefore, it has the possibility to find a new physical knowledge in mesosphere and lower ionosphere. MF Rader transmits the burst pulse radio wave toward vertically direction. This pulse has 48μsec. width and modulated by 1.995MHz. Differential Absorption Experiment (DAE) is one of the methods to estimate the electron density by MF radar. DAE needs three information, which are ratio of received intensity, reflection coefficient and attenuate coefficient. Ratio of received intensity is found by the differential amount of between the left and the right polarized wave reflected by ionosphere. Though, reflection and attenuation coefficient are given as constant which is only depended on altitude, and is not depended on electron or atmospheric density. The validity of DAE has not been examined for more than 30 years. So we examine the validity of treatment both refection and attenuation coefficient as constant. Full wave analysis is a simulation method to calculate the radio wave propagation characteristics in ionosphere. Though, MF radar transmitted pulse must be treated in the time-domain. In this study, we obtain the time development of MF radar transmitted pulse by applying Fourier transformation to Full wave analysis on simulation. It is required some parameters, electron density profile, neutral-electron collision frequency profile, etc., to execute Full wave analysis. This time development data of MF radar transmitted pulse includes the reflection pulse, i.e. ratio of received intensity, at the ionosphere. We can calculate electron density profile by DAE method

  6. Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy

    Garcia-Mas Jordi


    Full Text Available Abstract Background Cucumis melo (melon belongs to the Cucurbitaceae family, whose economic importance among horticulture crops is second only to Solanaceae. Melon has a high intra-specific genetic variation, morphologic diversity and a small genome size (454 Mb, which make it suitable for a great variety of molecular and genetic studies. A number of genetic and genomic resources have already been developed, such as several genetic maps, BAC genomic libraries, a BAC-based physical map and EST collections. Sequence information would be invaluable to complete the picture of the melon genomic landscape, furthering our understanding of this species' evolution from its relatives and providing an important genetic tool. However, to this day there is little sequence data available, only a few melon genes and genomic regions are deposited in public databases. The development of massively parallel sequencing methods allows envisaging new strategies to obtain long fragments of genomic sequence at higher speed and lower cost than previous Sanger-based methods. Results In order to gain insight into the structure of a significant portion of the melon genome we set out to perform massive sequencing of pools of BAC clones. For this, a set of 57 BAC clones from a double haploid line was sequenced in two pools with the 454 system using both shotgun and paired-end approaches. The final assembly consists of an estimated 95% of the actual size of the melon BAC clones, with most likely complete sequences for 50 of the BACs, and a total sequence coverage of 39x. The accuracy of the assembly was assessed by comparing the previously available Sanger sequence of one of the BACs against its 454 sequence, and the polymorphisms found involved only 1.7 differences every 10,000 bp that were localized in 15 homopolymeric regions and two dinucleotide tandem repeats. Overall, the study provides approximately 6.7 Mb or 1.5% of the melon genome. The analysis of this new data has

  7. Paradoxical bronchospasm from benzalkonium chloride (BAC) preservative in albuterol nebulizer solution in a patient with acute severe asthma. A case report and literature review of airway effects of BAC.

    George, Mathew; Joshi, Saumya Vinod; Concepcion, Emily; Lee, Haesoon


    Nebulized bronchodilator solutions are available in the United States as both nonsterile and sterile-filled products. Sulfites, benzalkonium chloride (BAC), or chlorobutanol are added to nonsterile products to prevent bacterial growth. Bronchoconstriction from inhaled BAC is cumulative, prolonged, and correlates directly with basal airway responsiveness. The multi-dose dropper bottle of albuterol sulfate solution contains 50 μg BAC per/2.5 mg of albuterol, which may be below or at the lower limit of the threshold dose for bronchoconstriction. However, with repeated albuterol nebulization, the effect can be additive and cumulative, often exceeding the bronchoconstriction threshold. We report a case of a 17 years old patient, who received 32 mg of BAC via nebulization over a period of 3.5 days that probably caused persistent bronchospasm evidenced by failure to improve clinically and to increase peak expiratory flow rate (PEFR) from 125 L/min (27% of predicted value) to 300 L/min (68% of predicted value) within 2 hours of withdrawing BAC. The patient's respiratory status and PEFR improved dramatically once the nebulization solution was switched to BAC free lev-albuterol solution. The pediatric providers, particularly the emergency department physicians, intensivists and pulmonologists need to be aware of this rare albeit possible toxicity to the respiratory system caused by BAC used as a preservative in albuterol nebulizer solution.

  8. Paradoxical bronchospasm from benzalkonium chloride (BAC preservative in albuterol nebulizer solution in a patient with acute severe asthma. A case report and literature review of airway effects of BAC

    Mathew George, MD


    Full Text Available Nebulized bronchodilator solutions are available in the United States as both nonsterile and sterile-filled products. Sulfites, benzalkonium chloride (BAC, or chlorobutanol are added to nonsterile products to prevent bacterial growth. Bronchoconstriction from inhaled BAC is cumulative, prolonged, and correlates directly with basal airway responsiveness. The multi-dose dropper bottle of albuterol sulfate solution contains 50 μg BAC per/2.5 mg of albuterol, which may be below or at the lower limit of the threshold dose for bronchoconstriction. However, with repeated albuterol nebulization, the effect can be additive and cumulative, often exceeding the bronchoconstriction threshold. We report a case of a 17 years old patient, who received 32 mg of BAC via nebulization over a period of 3.5 days that probably caused persistent bronchospasm evidenced by failure to improve clinically and to increase peak expiratory flow rate (PEFR from 125 L/min (27% of predicted value to 300 L/min (68% of predicted value within 2 hours of withdrawing BAC. The patient's respiratory status and PEFR improved dramatically once the nebulization solution was switched to BAC free lev-albuterol solution. The pediatric providers, particularly the emergency department physicians, intensivists and pulmonologists need to be aware of this rare albeit possible toxicity to the respiratory system caused by BAC used as a preservative in albuterol nebulizer solution.

  9. Measuring affective temperaments: a systematic review of validation studies of the Temperament Evaluation in Memphis Pisa and San Diego (TEMPS) instruments.

    Elias, Liana R; Köhler, Cristiano A; Stubbs, Brendon; Maciel, Beatriz R; Cavalcante, Lígia M; Vale, Antonio M O; Gonda, Xénia; Quevedo, João; Hyphantis, Thomas N; Soares, Jair C; Vieta, Eduard; Carvalho, André F


    The assessment of affective temperaments has provided useful insights for the psychopathological understanding of affective disorders and for the conceptualization of bipolar spectrum disorders. The Temperament in Memphis Pisa and San Diego (TEMPS) instrument has been widely used in research, yet its psychometric properties and optimal factor structure are unclear. The PubMed/MEDLINE, PsycINFO, and EMBASE electronic databases were searched from inception until March 15th, 2016. Validation peer-reviewed studies of different versions of the TEMPS performed in adult samples were considered for inclusion. Twenty-seven studies (N=20,787) met inclusion criteria. Several versions of the TEMPS have been validated in 14 languages across 15 countries. The 110-item self-reported version of the TEMPS has been the most studied version. Most studies (50%) supported a five factor solution although few studies performed confirmatory factor analyses. A five-factor solution has consistently been reported for the 39-item version of the TEMPS-A. Overall, evidence indicates that different versions of the TEMPS have adequate internal consistency reliability, while the TEMPS-A-110 version has acceptable test-retest reliability. The methodological quality of included studies varied. A meta-analysis could not be performed due to the heterogeneity of settings and versions of the TEMPS utilized. Different versions of the TEMPS have been validated across different cultures. The short 39-item version of the TEMPS-A holds promise and merits further investigation. Culture-bound factors may influence the expression and/or assessment of affective temperaments with the TEMPS. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Effect of tempe waste on excreation of purine derivatives and microbial–N supply in lactating Etawah crossbred goats

    D.A Astuti


    Full Text Available The aim of this study was to evaluate excretion of purine derivatives and microbial–N supply in lactating Etawah crossbred goats fed with fermented soybean waste. Sixteen first lactating goats were randomly allotted into four dietary treatment groups that received 50% king grass plus R1: 50% concentrate, R2: 25% concentrate and 25% fresh tempe waste, R3: 25% concentrate and 25% fermented tempe waste, and R4: 25% concentrate and 25% gelatinizing of liquid tempe waste. Fermented tempe waste was made by fermentation of tempe waste (seed content of soybean using Aspergillus niger, while for the gellatinizing of liquid tempe waste was made by gelatinized with maize flour. Protein balance studies were conducted during two week trial and at the end of the research. Urinary protein and purine derivatives were collected for analysis. Microbial–N supply was calculated from purine derivatives excretion. Results showed that nitrogen consumptions were significantly different between R4 and three other treatments and apparent digestible nitrogen in R3 were higher than that of R4 (P<0.05. The nitrogen retention in R1 and R3 were higher than that of R2 and R4. Urinary purine derivatives in this study showed that allantoin, xanthine and hypoxanthine in R3 were higher than that of R4, while R1 and R2 were the same and the highest uric acid excretion and total purine derivatives were observed in R3. Microbial–N supply were significantly different between all treatments where R3 was the highest. This research concluded that fermented soybean waste had the highest total purine derivatives excretion and microbial–N supply to the lactating Etawah crossbred goats.

  11. Description sémantique de dans un premier temps : de la composition syntagmatique au discours

    Catherine Schnedecker


    Full Text Available Cet article est consacré à l’expression adverbiale réputée sérielle dans un premier temps. Y est d’abord décrit le comportement sémantique de la locution dont le sens reste, pour une bonne partie, compositionnel, étant donné l’importance de la dimension temporelle et les contraintes qu’elle fait peser sur la nature des constituants de la configuration. Ensuite, nous montrons que l’expression dans un premier temps n’est « sérielle » que dans une partie de ses emplois. Dans les autres, non signalés dans la littérature, dans un premier temps marque une relation d’altérité qui peut être « faible » (i. e. encore teintée de temporalité ou « forte » (i. e. nettement contradictoire.The aim of this paper is to describe the semantic behavior of the French expression dans un premier temps, known as a serial marker. We show how its meaning is partly compositional, given the importance of the temporal dimension and the constraints which this places on the nature of the constituents. We then show that dans un premier temps is “serial” in only some of its uses. In others, not reported in the literature, dans un premier temps expresses a relation of “otherness” which can be either “weak” (i.e. keeping a temporal value, or “strong” (i.e. sharply contradictory.

  12. BAC Library Construction and Physical Mapping of Bacillus anthracis A16R

    Zhang Da; Zhu Houchu; Huang Liuyu


    Bacillus anthracis is an endospore-forming bacterium that causes severe inhalational anthrax, and bacillus anthracis A16R is an attenuated strain derived from Bacillus anthracis A16. The development of bacterial artificial chromosome (BAC) system has allowed the construction of large insert-size DNA libraries, and the bacterial artificial chromosomes (BACs) have become the preferred large insert cloning system for genomic analysis because such libraries are characteristically stable, high in ifdelity and easy to handle. To facilitate genome studies of this bacterium, a bacterial artiifcial chromosome library (BAC) has been established from genome DNA of Bacillus anthracis A16R. This library consisted of 9 600 clones randomly selected from more than 15 000 recombinant clones carrying inserts in the plindigoBAC-5 vectors. The mean insert size was 56 kbp, representing an approximate 12-fold genome coverage, while end sequences were obtained from 700 randomly selected clones. Sequences were compared with Bacillus anthracis Ames and Bacillus cereus ATCC 14579 Genome Project databases using the NCBI BLASTN search project. And most BLASTN results showed high identities and that the sequences’ sites could be used as STSs. To construct this physical map, Excel was used for the array of STSs and some gaps of the map were iflled up by PCR walking. Artemis-V4 was used in the construction of a genome-wide physical map with 93%genome coverage. The A16R BAC library proved to be a vital tool for the generation of a map that would not only allow the subsequent sequencing of defined areas of genome, but also provide immediate access to clones that were stable and convenient for functional genomic researches.

  13. Membrane Topology and Biochemical Characterization of the Escherichia coli BacA Undecaprenyl-Pyrophosphate Phosphatase.

    Guillaume Manat

    Full Text Available Several integral membrane proteins exhibiting undecaprenyl-pyrophosphate (C55-PP phosphatase activity were previously identified in Escherichia coli that belonged to two distinct protein families: the BacA protein, which accounts for 75% of the C55-PP phosphatase activity detected in E. coli cell membranes, and three members of the PAP2 phosphatidic acid phosphatase family, namely PgpB, YbjG and LpxT. This dephosphorylation step is required to provide the C55-P carrier lipid which plays a central role in the biosynthesis of various cell wall polymers. We here report detailed investigations of the biochemical properties and membrane topology of the BacA protein. Optimal activity conditions were determined and a narrow-range substrate specificity with a clear preference for C55-PP was observed for this enzyme. Alignments of BacA protein sequences revealed two particularly well-conserved regions and several invariant residues whose role in enzyme activity was questioned by using a site-directed mutagenesis approach and complementary in vitro and in vivo activity assays. Three essential residues Glu21, Ser27, and Arg174 were identified, allowing us to propose a catalytic mechanism for this enzyme. The membrane topology of the BacA protein determined here experimentally did not validate previous program-based predicted models. It comprises seven transmembrane segments and contains in particular two large periplasmic loops carrying the highly-conserved active site residues. Our data thus provide evidence that all the different E. coli C55-PP phosphatases identified to date (BacA and PAP2 catalyze the dephosphorylation of C55-PP molecules on the same (outer side of the plasma membrane.

  14. A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L

    Abbo Shahal


    Full Text Available Abstract Background Chickpea (Cicer arietinum L. is the third most important pulse crop worldwide. Despite its importance, relatively little is known about its genome. The availability of a genome-wide physical map allows rapid fine mapping of QTL, development of high-density genome maps, and sequencing of the entire genome. However, no such a physical map has been developed in chickpea. Results We present a genome-wide, BAC/BIBAC-based physical map of chickpea developed by fingerprint analysis. Four chickpea BAC and BIBAC libraries, two of which were constructed in this study, were used. A total of 67,584 clones were fingerprinted, and 64,211 (~11.7 × of the fingerprints validated and used in the physical map assembly. The physical map consists of 1,945 BAC/BIBAC contigs, with each containing an average of 28.3 clones and having an average physical length of 559 kb. The contigs collectively span approximately 1,088 Mb. By using the physical map, we identified the BAC/BIBAC contigs containing or closely linked to QTL4.1 for resistance to Didymella rabiei (RDR and QTL8 for days to first flower (DTF, thus further verifying the physical map and confirming its utility in fine mapping and cloning of QTL. Conclusion The physical map represents the first genome-wide, BAC/BIBAC-based physical map of chickpea. This map, along with other genomic resources previously developed in the species and the genome sequences of related species (soybean, Medicago and Lotus, will provide a foundation necessary for many areas of advanced genomics research in chickpea and other legume species. The inclusion of transformation-ready BIBACs in the map greatly facilitates its utility in functional analysis of the legume genomes.

  15. A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L.

    Zhang, Xiaojun; Scheuring, Chantel F; Zhang, Meiping; Dong, Jennifer J; Zhang, Yang; Huang, James J; Lee, Mi-Kyung; Abbo, Shahal; Sherman, Amir; Shtienberg, Dani; Chen, Weidong; Muehlbauer, Fred; Zhang, Hong-Bin


    Chickpea (Cicer arietinum L.) is the third most important pulse crop worldwide. Despite its importance, relatively little is known about its genome. The availability of a genome-wide physical map allows rapid fine mapping of QTL, development of high-density genome maps, and sequencing of the entire genome. However, no such a physical map has been developed in chickpea. We present a genome-wide, BAC/BIBAC-based physical map of chickpea developed by fingerprint analysis. Four chickpea BAC and BIBAC libraries, two of which were constructed in this study, were used. A total of 67,584 clones were fingerprinted, and 64,211 (~11.7 x) of the fingerprints validated and used in the physical map assembly. The physical map consists of 1,945 BAC/BIBAC contigs, with each containing an average of 28.3 clones and having an average physical length of 559 kb. The contigs collectively span approximately 1,088 Mb. By using the physical map, we identified the BAC/BIBAC contigs containing or closely linked to QTL4.1 for resistance to Didymella rabiei (RDR) and QTL8 for days to first flower (DTF), thus further verifying the physical map and confirming its utility in fine mapping and cloning of QTL. The physical map represents the first genome-wide, BAC/BIBAC-based physical map of chickpea. This map, along with other genomic resources previously developed in the species and the genome sequences of related species (soybean, Medicago and Lotus), will provide a foundation necessary for many areas of advanced genomics research in chickpea and other legume species. The inclusion of transformation-ready BIBACs in the map greatly facilitates its utility in functional analysis of the legume genomes.

  16. Comparative analysis of catfish BAC end sequences with the zebrafish genome

    Abernathy Jason


    Full Text Available Abstract Background Comparative mapping is a powerful tool to transfer genomic information from sequenced genomes to closely related species for which whole genome sequence data are not yet available. However, such an approach is still very limited in catfish, the most important aquaculture species in the United States. This project was initiated to generate additional BAC end sequences and demonstrate their applications in comparative mapping in catfish. Results We reported the generation of 43,000 BAC end sequences and their applications for comparative genome analysis in catfish. Using these and the additional 20,000 existing BAC end sequences as a resource along with linkage mapping and existing physical map, conserved syntenic regions were identified between the catfish and zebrafish genomes. A total of 10,943 catfish BAC end sequences (17.3% had significant BLAST hits to the zebrafish genome (cutoff value ≤ e-5, of which 3,221 were unique gene hits, providing a platform for comparative mapping based on locations of these genes in catfish and zebrafish. Genetic linkage mapping of microsatellites associated with contigs allowed identification of large conserved genomic segments and construction of super scaffolds. Conclusion BAC end sequences and their associated polymorphic markers are great resources for comparative genome analysis in catfish. Highly conserved chromosomal regions were identified to exist between catfish and zebrafish. However, it appears that the level of conservation at local genomic regions are high while a high level of chromosomal shuffling and rearrangements exist between catfish and zebrafish genomes. Orthologous regions established through comparative analysis should facilitate both structural and functional genome analysis in catfish.

  17. BAC Library Construction and Physical Mapping of Bacillus anthracis A16R

    Da Zhang


    Full Text Available Bacillus anthracis is an endospore-forming bacterium that causes severe inhalational anthrax, and bacillus anthracis A16R is an attenuated strain derived from Bacillus anthracis A16. The development of bacterial artificial chromosome (BAC system has allowed the construction of large insert-size DNA libraries, and the bacterial artificial chromosomes (BACs have become the preferred large insert cloning system for genomic analysis because such libraries are characteristically stable, high in fidelity and easy to handle. To facilitate genome studies of this bacterium, a bacterial artificial chromosome library (BAC has been established from genome DNA of Bacillus anthracis A16R. This library consisted of 9 600 clones randomly selected from more than 15 000 recombinant clones carrying inserts in the plindigoBAC-5 vectors. The mean insert size was 56 kbp, representing an approximate 12-fold genome coverage, while end sequences were obtained from 700 randomly selected clones. Sequences were compared with Bacillus anthracis Ames and Bacillus cereus ATCC 14579 Genome Project databases using the NCBI BLASTN search project. And most BLASTN results showed high identities and that the sequences’ sites could be used as STSs. To construct this physical map, Excel was used for the array of STSs and some gaps of the map were filled up by PCR walking. Artemis-V4 was used in the construction of a genome-wide physical map with 93% genome coverage. The A16R BAC library proved to be a vital tool for the generation of a map that would not only allow the subsequent sequencing of defined areas of genome, but also provide immediate access to clones that were stable and convenient for functional genomic researches.

  18. 454 sequencing of pooled BAC clones on chromosome 3H of barley

    Yamaji Nami


    Full Text Available Abstract Background Genome sequencing of barley has been delayed due to its large genome size (ca. 5,000Mbp. Among the fast sequencing systems, 454 liquid phase pyrosequencing provides the longest reads and is the most promising method for BAC clones. Here we report the results of pooled sequencing of BAC clones selected with ESTs genetically mapped to chromosome 3H. Results We sequenced pooled barley BAC clones using a 454 parallel genome sequencer. A PCR screening system based on primer sets derived from genetically mapped ESTs on chromosome 3H was used for clone selection in a BAC library developed from cultivar "Haruna Nijo". The DNA samples of 10 or 20 BAC clones were pooled and used for shotgun library development. The homology between contig sequences generated in each pooled library and mapped EST sequences was studied. The number of contigs assigned on chromosome 3H was 372. Their lengths ranged from 1,230 bp to 58,322 bp with an average 14,891 bp. Of these contigs, 240 showed homology and colinearity with the genome sequence of rice chromosome 1. A contig annotation browser supplemented with query search by unique sequence or genetic map position was developed. The identified contigs can be annotated with barley cDNAs and reference sequences on the browser. Homology analysis of these contigs with rice genes indicated that 1,239 rice genes can be assigned to barley contigs by the simple comparison of sequence lengths in both species. Of these genes, 492 are assigned to rice chromosome 1. Conclusions We demonstrate the efficiency of sequencing gene rich regions from barley chromosome 3H, with special reference to syntenic relationships with rice chromosome 1.

  19. 单体法制备MF气凝胶工艺%Preparation of MF Aerogel Prepared with Monomer

    张勇; 朱晓霞; 任洪波; 张林


    MF aerogel was prepared from Melamine(M) and Formaldehyde(F) by sol-gel and supercritical drying process. In the experiment we studied the relation between the total concentration, pH, temperature, gelation time and structre.The results indicated that in the specifically pH and temperature, the gelation time of MF aerogel reduced when the total concentration or pH of the solution increased, transparent MF aerogel was given in the stated pH ( 1.4 ~ 1.8 ) and size distribution became narrow and even ( 1 ~3 nm) when the reactant concentration increased.%以三聚氰胺(M)和甲醛(F)为原料,经溶胶-凝胶和超临界干燥过程成功制备出 MF 气凝胶.实验详细研究了反应物总浓度、溶液pH值、温度等对凝胶化时间及其结构的影响,实验结果表明:在一定的浓度和pH值范围内,凝胶化时间随反应物总浓度增加而减少,随pH值的降低而减少;只有在一定的pH值范围内(1.4~1.8)才能制得透明的 MF 气凝胶,反应物总浓度增大,孔径分布较窄且均匀(1~3 nm).

  20. Résistance des gammares de la Seine aux élévations de température



    Full Text Available Des tests thermiques ont permis la définition des températures moyennes supérieures létales pour les Gammares de la Seine (Rivulogammarus roeselii 85 % ; Rivulogammarus pulex 15 % acclimatés, dans leur milieu naturel, à 5° C, 14° C et 21° C. Les températures létales moyennes sur 96 heures sont respectivement de 24,9° C, 27,7° C et 28,4° C.

  1. Effet du pas de temps sur la simulation d'un système éolien-stockage

    Haessig, Pierre; Multon, Bernard; Ben Ahmed, Hamid


    International audience; Les simulations temporelles sont souvent utilisées pour étudier la performance de système d’énergie, surtout en présence d’entrées aléatoires telles qu’une production éolienne. Ces simulations utilisent généralement un pas de temps long (1 h) pour garder un temps de calcul raisonnable, mais aussi parce que les données disponibles ont souvent une résolution temporellefaible. Pourtant, les productions éoliennes (machine seule ou ferme) présentent des fluctuations rapides...

  2. Aménagement des fins de carrière : entre reconfiguration des temps sociaux et transformations normatives

    Burnay, Nathalie


    L’objectif de cet article est de comprendre les transformations des temporalités actuelles, à travers le prisme des fins de carrière. Il s’agira de montrer combien le développement de dispositifs spécifiques de réduction du temps de travail en Belgique transforment les vécus dans et hors travail des seniors, dans une recomposition des temps sociaux et des parcours de vie. Cet article repose sur l’analyse de 491 questionnaires récoltés dans deux secteurs d’activité contrastés et de 42 entretie...

  3. PiggyBac Transposon Mediated Efficient eGFP Expression in Porcine Somatic Cells and Cloned Embryos

    Luo Yi-bo; Zhang Li; Zhu Jiang; Wu Mei-ling; Huan Yan-jun; Yin Zhi; Mu Yan-shuang; Xia Ping; LiuZhong-hua


    PiggyBac transposon has demonstrated its long-term and stable transposition on genomes of various species but lacking of the evidence on farm animal genomes. In this study, we constructed a piggyBac transposon marked with enhanced green fluorescent protein (eGFP) and showed efficient transposition in porcine somatic cells and cloned embryos. Our results demonstrated that piggyBac transposase could efficiently catalyze transposition in porcine fetal fibroblast cells, as well as in embryos. PiggyBac transposition generated 18-fold more eGFP-positive cell colonies compared to pEGFP-C1 random insertion mutagenesis, but excessive transposase might affect the transfection rate. Also piggyBac mediated 4-fold more eGFP expression than random insertion in cells and 17-fold in cloned embryos at mRNA level. When the mutagenized cells were used for somatic cell nuclear transfer (SCNT), the cleavage rate and blastocyst rate of constructed embryos harboring piggyBac transposition had no difference with random insertion group. This study provides key information on the piggyBac transposon system as a tool for creating transgenic pigs.

  4. Construction of BAC-based physical map and analysis of chromosome rearrangement in Chinese hamster ovary cell lines.

    Cao, Yihua; Kimura, Shuichi; Itoi, Takayuki; Honda, Kohsuke; Ohtake, Hisao; Omasa, Takeshi


    Chinese hamster ovary (CHO) cells have frequently been used in biotechnology for many years as a mammalian host cell platform for cloning and expressing genes of interest. A detailed physical chromosomal map of the CHO DG44 cell line was constructed by fluorescence in situ hybridization (FISH) imaging using randomly selected 303 BAC clones as hybridization probes (BAC-FISH). The two longest chromosomes were completely paired chromosomes; other chromosomes were partly deleted or rearranged. The end sequences of 624 BAC clones, including 287 mapped BAC clones, were analyzed and 1,119 informative BAC end sequences were obtained. Among 303 mapped BAC clones, 185 clones were used for BAC-FISH analysis of CHO K1 chromosomes and 94 clones for primary Chinese hamster lung cells. Based on this constructed physical map and end sequences, the chromosome rearrangements between CHO DG44, CHO K1, and primary Chinese hamster cells were investigated. Among 20 CHO chromosomes, eight were conserved without large rearrangement in CHO DG44, CHO K1, and primary Chinese hamster cells. This result suggested that these chromosomes were stable and essential in CHO cells and supposedly conserved in other CHO cell lines.

  5. High-latitude propagation studies using a meridional chain of LF/MF/HF receivers

    J. LaBelle


    Full Text Available For over a decade, Dartmouth College has operated programmable radio receivers at multiple high-latitude sites covering the frequency range 100-5000kHz with about a 1-s resolution. Besides detecting radio emissions of auroral origin, these receivers record characteristics of the ionospheric propagation of natural and man-made signals, documenting well-known effects, such as the diurnal variation in the propagation characteristics of short and long waves, and also revealing more subtle effects. For example, at auroral zone sites in equinoctial conditions, the amplitudes of distant transmissions on MF/HF frequencies are often enhanced by a few dB just before they fade away at dawn. The polarization and/or direction of the arrival of ionospherically propagating signals in the lower HF range (3-5MHz show a consistent variation between pre-midnight, post-midnight, and pre-dawn conditions. As is well known, magnetic storms and substorms dramatically affect ionospheric propagation; data from multiple stations spanning the invariant latitude range 67-79° reveal spatial patterns of propagation characteristics associated with magnetic storms and substorms. For example, in the hours preceding many isolated substorms, favorable propagation conditions occur at progressively lower latitudes as a function of time preceding the substorm onset. For some of these effects, explanations follow readily from elementary ionospheric physics, but understanding others requires further investigation.

    Key words. Magnetospheric physics (annual phenomena – Radio science (ionosphere propagation; radio-wave propagation6

  6. Exploiting LF/MF signals of opportunity for lower ionospheric remote sensing

    Higginson-Rollins, Marc A.; Cohen, Morris B.


    We introduce a method to diagnose and track the D region ionosphere (60-100 km). This region is important for long-distance terrestrial communication and is impacted by a variety of geophysical phenomena, but it is traditionally very difficult to detect. Modern remote sensing methods used to study the D region are predominately near the very low frequency (VLF, 3-30 kHz) band, with some work also done in the high-frequency and very high frequency bands (HF/VHF, 3-300 MHz). However, the frequency band between VLF and HF has been largely ignored as a diagnostic tool for the ionosphere. In this paper, we evaluate the use of 300 kHz radio reflections as a diagnostic tool for characterizing the D region of the ionosphere. We present radio receiver data, analyze diurnal trends in the signal from these transmitters, and identify ionospheric disturbances impacting LF/MF propagation. We find that 300 kHz remote sensing may allow a unique method for D region diagnostics compared to both the VLF and HF/VHF frequency bands, due to a more direct ionospheric reflection coefficient calculation method with high temporal resolution without the use of forward modeling.

  7. Reverse osmosis concentrate treatment via a PAC-MF accumulative countercurrent adsorption process.

    Zhao, Chunxia; Gu, Ping; Cui, Hangyu; Zhang, Guanghui


    Organic pollutants in reverse osmosis (RO) concentrates from wastewater reclamation are mainly comprised of low molecular weight biorefractory compounds. Generally, advanced oxidation methods for oxidizing these organics require a relatively high level of energy consumption. In addition, conventional adsorption removal methods require a large dose of activated carbon. However, the dose can be reduced if its full adsorption capacity can be used. Therefore, the combined technology of powdered activated carbon (PAC) adsorption and microfiltration (MF) membrane filtration was studied to develop a countercurrent two-stage adsorption process. A PAC accumulative adsorption prediction method was proposed based on the verification of a PAC multi-stage adsorption capacity equation. Moreover, the prediction method was amended for a more accurate prediction of the effluent quality because adsorption isotherm constants were affected by the initial adsorbate concentration. The required PAC dose for the accumulative countercurrent two-stage adsorption system was 0.6 g/L, whereas that of the conventional adsorption process was 1.05 g/L when the dilution factor(F) was 0.1 and the COD and DOC removal rates were set to 70% and 68.1%, respectively. Organic pollutants were satisfactorily removed with less consumption of PAC. Effluent from this combined technology can be further reclaimed by an RO process to improve the overall recovery rate to between 91.0% and 93.8% with both economic and environmental benefits.

  8. Effect of the Antisense BcMF12 Driven by the BcA9 Promoter on Gene Silencing in Brassica campestris L. ssp. chinensis


    The study analyzed the silencing of BcMF12 gene regulated by BcA9 promoter in the transgenic pakchoi and confirmed the effect of antisense BcMF12 gene on the pollen development. A conserved BcMF12 gene fragment was amplified from the cDNA of flower buds in pakchoi (Brassica campestris L. ssp. chinensis, syn. B. rapa L. ssp. chinensis) and was fused to the anther specific BcA9 promoter. The plant antisense expression vector was constructed and then introduced into pakchoi via Agrobacterium-mediated transformation. The transgenic plants were screened by antibiotics and molecular analysis. PCR and Southern blot revealed that the antisense BcMF12-GUS fusion gene regulated by BcA9 promoter was integrated into transgenic plants. Northern blot suggested that the expression of BcMF12 gene was down-regulated significantly. The pollen germination rate of transgenic plants with antisense BcMF12 gene decreased as compared with that of the control plants. The expression of the gene BcMF12 related to the pollen development was inhibited by the antisense BcMF12 driven by BcA9 promoter, which consequently affected the pollen development in pakchoi.

  9. MF-DFA Based Stock Time Series Clustering Analysis and Its Applications%基于MF-DFA的股票时间序列聚类分析及其应用

    袁杰; 薛永坚; 肖宏旺


    多重分形消除趋势波动分析法(MF-DFA)不仅能够去除股票时间序列的长期趋势波动,还能够精确反应股票时间序列的多重分形特性。首先利用MF-DFA方法对股票时间序列进行多重分形分析,结果表明,相比标准多重分析,MF-DFA方法更能反映时间序列的多重分形特性。其次,定义一种以多重分形谱参数作为相似性度量函数的聚类方法对股票时间序列进行聚类。最后,在Markowitz提出的“期望均值收益-收益方差”(M-V)模型的基础上,把聚类结果运用股票投资组合当中。采用上海证券市场28支股票进行实验验证表明,在给定的收益率下,采用基于多重分形谱参数的聚类方法的股票组合可以得到比随机组合更小的风险水平。%The method of multi-fractal detrended fluctuation analysis (MF-DFA) can not only be able to remove the fluctuations of the long-term trend in the stock market time series, but also be able to describe the multi-fractal characteristics. First of all, this paper uses the MF-DFA to analyze the multi-fractal characteristics of the stock market time series and the result shows that the method of MF-DFA is more efficient. Secondly, it defines a similarity measure function of clustering which use the parameters of multi-fractal spectrum as their parameters on the stock time series clustering. Finally, based on the Markowitz proposed the rule of expected mean and the variance of return (M-V rule), it applies the clustering results into the stock portfolio. According to the experiment result, a portfolio with more return and lower risk is reached.

  10. Investigation of decolorization of textile wastewater in an anaerobic/aerobic biological activated carbon system (A/A BAC).

    Pasukphun, N; Vinitnantharat, S; Gheewala, S


    The aim of this study is to investigate the decolorization in anaerobic/aerobic biological activated carbon (A/A BAC) system. The experiment was divided into 2 stages; stage I is batch test for preliminary study of dye removal equilibrium time. The preliminary experiment (stage I) provided the optimal data for experimental design of A/A BAC system in SBR (stage II). Stage II is A/A BAC system imitated Sequencing Batch Reactor (SBR) which consist of 5 main periods; fill, react, settle, draw and idle. React period include anaerobic phase followed by aerobic phase. The BAC main media; Granular Activated Carbon (GAC), Mixed Cultures (MC) and Biological Activated Carbon (BAC) were used for dye and organic substances removal in three different solutions; Desizing Agent Solution (DAS), dye Solution (DS) and Synthetic Textile Wastewater (STW). Results indicate that GAC adsorption plays role in dye removal followed by BAC and MC activities, respectively. In the presence desizing agent, decolorization by MC was improved because desizing agent acts as co-substrates for microorganisms. It was found that 50% of dye removal efficiency was achieved in Fill period by MC. GC/MS analysis was used to identify dye intermediate from decolorization. Dye intermediate containing amine group was found in the solution and on BAC surfaces. The results demonstrated that combination of MC and BAC in the system promotes decolorization and dye intermediate removal. In order to improve dye removal efficiency in an A/A BAC system, replacement of virgin GAC, sufficient co-substrates supply and the appropriate anaerobic: aerobic period should be considered.

  11. PENINGKATAN AKTIVITAS ANTIOKSIDAN SUPEROKSIDA DISMUTASE PADA TIKUS HIPERGLIKEMI DENGAN ASUPAN TEMPE KORO BENGUK (Mucuna pruriens L. (Increased Superoxide Dismutase Antioxidant Activity in Hyperglycemia Rat with Velvet Bean (Mucuna pruriens L.Tempe Diet

    Christiana Retnaningsih


    Hiperglikemi menimbulkan stress oksidatif dan patogenesis komplikasi diabetes. Untuk menurunkan hiperglikemi perlu dipertimbangkan kombinasi antara pengobatan modern dengan terapi tardisional melalui pangan fungsional guna mengurangi kerusakan sel beta pankreas. Bahan pangan yang memiliki potensi fungsional tersebut adalah biji koro benguk (Mucuna pruriens L yang difermentasi menjadi bentuk tempe. Tujuan dari penelitian ini adalah untuk membuktikan pengaruh asupan tempe koro benguk terhadap kadar glukosa darah dan status antioksidan serum pada tikus hiperglikemi. Penelitian ini menggunakan 50 ekor tikus jantan jenis Sprague Dawley umur 2-3 bulan. Tikus dibagi ke dalam 5 kelompok dengan cara random alokasi. Kelompok 1 kontrol negatif (C-, kelompok 2 kontrol positif (C+, kelompok 3 adalah X1-TK10%, kelompok 4 adalah X2-TK10%, kelompok 5 adalah X3-TK10%. Tikus kelompok C+, X1, X2, X3 diinduksi streptozotocin (STZ dengan dosis 40 mg/kg BB secara inta peritoneal. Penelitian dilakukan selama 30 hari. Data dianalisis dengan Paired T test, One way Anova dan dilanjutkan dengan Uji Wilayah Ganda Duncan. Hasil penelitian menunjukkan bahwa STZ meningkatkan kadar glukosa darah dan menurunkan aktivitas antioksidan SOD serum. Hasil analisis in vivo pada tkus menunjukkan bahwa asupan tempe koro benguk menurunkan kadar glukosa darah dan meningkatkan aktivitas antioksidan SOD serum. Kata kunci: Tempe koro benguk, antioksidan, hiperglikemi

  12. Efficient transformation of the yellow fever mosquito Aedes aegypti using the piggyBac transposable element vector pBac[3xP3-EGFP afm].

    Kokoza, V; Ahmed, A; Wimmer, E A; Raikhel, A S


    We report efficient germ-line transformation in the yellow fever mosquito Aedes aegypti accomplished using the piggyBac transposable element vector pBac[3xP3-EGFP afm]. Two transgenic lines were established and characterized; each contained the Vg-Defensin A transgene with strong eye-specific expression of the enhanced green fluorescent protein (EGFP) marker gene regulated by the artificial 3xP3 promoter. Southern blot hybridization and inverse PCR analyses of genomic DNA demonstrated a precise piggyBac-mediated, single copy insertion of the pBac[3xP3-EGFP afm,Vg-DefA] transposon in each transgenic line. For each line, genetic analysis confirmed stability and integrity of the entire transposon construct in the mosquito genome through the G2-G6 generations. Successful establishment of homozygous transgenic lines indicated that in both cases a non-lethal integration of the transposon into the mosquito genome had occurred. The 3xP3-EGFP marker was tested in mosquitoes with different genetic backgrounds. In white-eyed transgenic mosquitoes, the strong eye-specific expression of GFP was observed throughout all stages of development, starting from newly hatched first instar larvae to adults. A similar level and pattern of fluorescence was observed in red-eyed mosquitoes that were generated by crossing the 3xP3-EGFP transformants with the kh(w) white-eye mosquitoes transformed with the Drosophila cinnabar gene. Importantly, the utility of the 3xP3-EGFP, as marker gene for transformation of wild type mosquitoes, was demonstrated by strong eye-specific GFP expression in larval and pupal stages of black-eyed hybrids of the 3xP3-EGFP white-eye transformants and the wild type Rockefeller/UGAL strain. Finally, analysis of the Vg-DefA transgene expression in transformants from two established lines demonstrated strong blood-meal activation and fat-body-specific expression regulated by the Vg 1.8-kb 5' upstream region.

  13. Genetic transformation of Drosophila willistoni using piggyBac transposon and GFP

    Manuela Finokiet


    Full Text Available Studies were carried out on the use of piggyBac transposable element as vector and the green fluorescent protein (EGFP from the jellyfish, Aquorea victoria, as a genetic marker for the transformation of Drosophila willistoni. Preblastoderm embryos of D. willistoni white mutant were microinjected with a plasmid containing the EGFP marker and the piggyBac ITRs, together with a helper plasmid containing the piggyBac transposase placed under the control of the D. melanogaster hsp70 promoter. G0 adults transformants were recovered at a frequency of approximately 67%. Expression of EGFP in larvae, pupae and adults was observed up to the third generation, suggesting that this transposon was not stable in D. willistoni. Transformed individuals displayed high levels of EGFP expression during larvae and adult stages in the eye, abdomen, thorax and legs, suggesting a wide expression pattern in this species than reported to other species of Drosophilidae.Descrevemos neste trabalho a transformação genética de Drosophila willistoni empregando o elemento transponível piggyBac como vetor e o gene EGFP (green fluorescent protein retirado da água-viva Aquorea victoria, como marcador de transformação. Embriões de D. willistoni em estágio pré-blastoderme, mutantes para o gene white, foram microinjetados com plasmídio contendo o marcador EGFP e as regiões ITRs do transposon piggyBac concomitantemente com um plasmídio auxiliar possuindo o gene da transposase de piggyBac sobre o controle do promotor do gene hsp70 de Drosophila melanogaster. Adultos transformantes Go foram gerados em uma taxa de 67%. A expressão de GFP em larvas, pupas e adultos foi observada somente até a terceira geração, sugerindo que este transposon não é estável em D. willistoni. Os indivíduos transformados exigem um alto nível de expressão de EGFP durante os estágios de larva e, também em adultos o gene marcador é expresso nos olhos, abdome, tórax e patas, mostrando um

  14. Bacteriocin protein BacL1 of Enterococcus faecalis targets cell division loci and specifically recognizes L-Ala2-cross-bridged peptidoglycan.

    Kurushima, Jun; Nakane, Daisuke; Nishizaka, Takayuki; Tomita, Haruyoshi


    Bacteriocin 41 (Bac41) is produced from clinical isolates of Enterococcus faecalis and consists of two extracellular proteins, BacL1 and BacA. We previously reported that BacL1 protein (595 amino acids, 64.5 kDa) is a bacteriolytic peptidoglycan D-isoglutamyl-L-lysine endopeptidase that induces cell lysis of E. faecalis when an accessory factor, BacA, is copresent. However, the target of BacL1 remains unknown. In this study, we investigated the targeting specificity of BacL1. Fluorescence microscopy analysis using fluorescent dye-conjugated recombinant protein demonstrated that BacL1 specifically localized at the cell division-associated site, including the equatorial ring, division septum, and nascent cell wall, on the cell surface of target E. faecalis cells. This specific targeting was dependent on the triple repeat of the SH3 domain located in the region from amino acid 329 to 590 of BacL1. Repression of cell growth due to the stationary state of the growth phase or to treatment with bacteriostatic antibiotics rescued bacteria from the bacteriolytic activity of BacL1 and BacA. The static growth state also abolished the binding and targeting of BacL1 to the cell division-associated site. Furthermore, the targeting of BacL1 was detectable among Gram-positive bacteria with an L-Ala-L-Ala-cross-bridging peptidoglycan, including E. faecalis, Streptococcus pyogenes, or Streptococcus pneumoniae, but not among bacteria with alternate peptidoglycan structures, such as Enterococcus faecium, Enterococcus hirae, Staphylococcus aureus, or Listeria monocytogenes. These data suggest that BacL1 specifically targets the L-Ala-L-Ala-cross-bridged peptidoglycan and potentially lyses the E. faecalis cells during cell division.

  15. Poema en prosa y mundos especulativos: en torno a Les Chasseurs du temps de Daniel Walther

    Mariano Martín Rodríguez


    Full Text Available The prose poem has traditionally been considered above all a lyrical genre. Never-theless, there are short fictions showing the main features of the prose poem, such as brevity, intensity, autonomy, importance of connotation, visionary character and, above all, the dominance of description. The fic-tional prose poem gives shape to an imagi-nary world which is poetically described, rather than narrated. The fictional character of this kind of prose poem is especially clear when what is described is a future reality, as it is the case in Stéphane Mallarmé’s «Le Phénomène futur» and in later series of prose poems which create prospective uni-verses. Among them, the series collected by Daniel Walther in 2010 under the title of Les Chasseurs du temps stands out for its mysterious force, its fictional coherence and the beauty of its images.

  16. Two-dimensional numerical research on effects of titanium target bombarded by TEMP Ⅱ accelerator

    Wu Di; Gong Ye; Liu Jin-Yuan; Wang Xiao-Gang; Liu Yue; Ma Teng-Cai


    Two-dimensional numerical research has been carried out on the ablation effects of titanium target irradiated by intense pulsed ion beam (IPIB) generated by TEMP Ⅱ accelerator. Temporal and spatial evolution of the ablation process of the target during a pulse time has been simulated. We have come to the conclusion that the melting and evaporating process begin from the surface and the target is ablated layer by layer when the target is irradiated by the IPIB. Meanwhile, we also obtained the result that the average ablation velocity in target central region is about 10 m/s, which is far less than the ejection velocity of the plume plasma formed by irradiation. Different effects have been compared to the different ratio of the ions and different energy density of IPIB while the target is irradiated by pulsed beams.

  17. Le temps comme explication de l'éternité chez Nicolas de Cues

    Counet, Jean-Michel


    La présence de Boèce chez Nicolas de Cues est évidente à plus d’un titre. En lien avec la thèse controversée de Stump et Kretzmann selon laquelle l’éternité serait conçue par Boèce comme étendue, l’article s’efforce de savoir ce qu’il en est de l’éternité chez Nicolas de Cues. La coïncidence des opposés doit être comprise à ce niveau comme la présence simultanée et connexe de tous les moments du temps. Une durée est dès lors comprise comme une contraction particulière de l’éternité et elle ap...

  18. TEMP: a computer code to calculate fuel pin temperatures during a transient. [LMFBR

    Bard, F E; Christensen, B Y; Gneiting, B C


    The computer code TEMP calculates fuel pin temperatures during a transient. It was developed to accommodate temperature calculations in any system of axi-symmetric concentric cylinders. When used to calculate fuel pin temperatures, the code will handle a fuel pin as simple as a solid cylinder or as complex as a central void surrounded by fuel that is broken into three regions by two circumferential cracks. Any fuel situation between these two extremes can be analyzed along with additional cladding, heat sink, coolant or capsule regions surrounding the fuel. The one-region version of the code accurately calculates the solution to two problems having closed-form solutions. The code uses an implicit method, an explicit method and a Crank-Nicolson (implicit-explicit) method.

  19. La pensée de Victor Frankl et notre temps

    Kühn, Rolf


    « La pensée de Victor Frankl et notre temps ». La pensée philosophique et logothérapeutique de V. E. Frankl est basée sur une phénoménologie de la liberté et du sentiment d’existence qui mettent en question les réductionnismes actuels du psychologisme, positivisme et nihi­lisme. L’individu réel répond à la vie à la fois axiologique et absolue pour donner un sens responsable à sa situation chaque fois unique. “Victor Frankl’s thought and our time”. Victor E. Frankl’s philosophical and logot...

  20. USFD2: Annotating Temporal Expresions and TLINKs for TempEval-2

    Derczynski, Leon


    We describe the University of Sheffield system used in the TempEval-2 challenge, USFD2. The challenge requires the automatic identification of temporal entities and relations in text. USFD2 identifies and anchors temporal expressions, and also attempts two of the four temporal relation assignment tasks. A rule-based system picks out and anchors temporal expressions, and a maximum entropy classifier assigns temporal link labels, based on features that include descriptions of associated temporal signal words. USFD2 identified temporal expressions successfully, and correctly classified their type in 90% of cases. Determining the relation between an event and time expression in the same sentence was performed at 63% accuracy, the second highest score in this part of the challenge.

  1. Penelitian pengaruh pembungkusan plastik terhadap kualitas tempe kedele dengan variasi jenis plastik dan lobang plastik

    C. Yuwono Sumasto


    Full Text Available This aim of research is to find out the plastic package effects the quality soy tempeh which use comparison leaves package. The objective of kinds and holes of plastic for quality tempeh, it has two variables these are kinds of plastics each polypropylene (PP and polyethylene (PE with hole variation of plastic are 20,25 and 30 each size number was 12 cm x 24 cm. Result of the research shown kinds and holes of plastic is not to take effect water and ash contain in tempeh. Testing laboratory result shown, water and ash contain is not to take effect by variable of the object research whereas protein contain in soy tempeh with plastic package is not fulfills specification SII 0271-80 “Kulalitas Tempe Kedele” min 20%, whereas protein contain of tempeh with leave package is result 24.281%.

  2. TempR: Application of Stricture Dependent Intelligent Classifier for Fast Flux Domain Detection

    Prabhjot Singh Chahal


    Full Text Available Fast-flux service networks (FFSN helps the cyber-criminals to hide the servers used for malicious activities behind a wall of proxies (bots. It provides the reliability and detection evasion to a malicious server. FFSN use a large pool of IP addresses for proxies. Detection of FFSN is difficult as few benign technologies like Content distribution networks and round robin DNS have similar working characteristics. Many approaches have been proposed to detect FFSN and fast flux domains. However, due to dynamic behavior of FFSN, these techniques suffer from a significant number of false positives. In this paper, we present a Temporal and Real time detections based approach (TempR to detect fast flux domains. The features of fast flux domains and benign domains have been collected and classified using intelligent classifiers. Our technique illustrates 96.99% detection accuracy with the recent behavior of fast flux domains.


    Dewi Pratiwi Ambari


    Full Text Available ABSTRACTThe purpose of this study was to develop formula of sausage based on tempeh flour with the addition of oyster mushroom (Pleurotus ostreatus as functional food rich in protein and dietary fiber as healthy snack product for children. Sausage was formulated by addition of oyster mushroom used trial and error method. A selected formula was determined based on semi trained panelist preference. Acceptance of the selected sausage formula was examine by children using hedonic test. The contribution of protein and dietary fiber contained in sausage per serving size (50 g was calculated for general consumer. The accepted sausage with 20% oyster mushroom addition contained 24% of protein and can be claimed as source of protein and 7.64 g of dietary fiber per 100 g and can be claimed rich in dietary fiber.Keywords: dietary fiber, oyster mushroom, protein, sausage, tempehABSTRAKTujuan penelitian ini adalah untuk mengembangkan formula sosis berbasis tempe dengan penambahan jamur tiram sebagai pangan fungsional kaya protein dan serat pangan untuk produk camilan sehat bagi anak-anak. Sosis diformulasikan dengan penambahan jamur tiram melalui metode trial dan error. Formula terpilih ditentukan berdasarkan kesukaan panelis semi terlatih. Penerimaan sosis formula terpilih dilakukan terhadap anak-anak melalui uji hedonik. Kontribusi protein dan serat pangan pada sosis per takaran saji (50 g dihitung untuk konsumen umum. Sosis terpilih dengan penambahan 20% jamur tiram mengandung 24% protein sehingga dapat diklaim sebagai sumber protein dan 7.64 g serat pangan per 100 g sehingga dapat diklaim kaya serat pangan.Kata kunci: jamur tiram, protein, serat pangan, sosis, tempe

  4. Cross-species bacterial artificial chromosome (BAC) library screening via overgo-based hybridization and BAC-contig mapping of a yield enhancement quantitative trait locus (QTL) yld1.1 in the Malaysian wild rice Oryza rufipogon

    Song, Beng-Kah; Nadarajah, Kalaivani; Romanov, Michael N.; Ratnam, Wickneswari


    The construction of BAC-contig physical maps is an important step towards a partial or ultimate genome sequence analysis. Here, we describe our initial efforts to apply an overgo approach to screen a BAC library of the Malaysian wild rice species, Oryza rufipogon. Overgo design is based on repetitive element masking and sequence uniqueness, and uses short probes (approximately 40 bp), making this method highly efficient and specific. Pairs of 24-bp oligos that contain an 8-bp overlap were dev...

  5. Sociographie d’un rapport au temps comme fondement de la culture professionnelle

    Abou Ndiaye


    Full Text Available Signer un contrat de travail c’est convenir de louer à une entreprise, contre rétribution, une partie de son temps personnel. Cet usage est borné par la loi, les accords de branche et les accords d’entreprise. Mais, dans certaines conditions, pour certaines raisons et pour des motivations jugées plus ou moins personnelles, un travailleur peut faire des « gratuités » et des arrangements exorbitants au regard de la réglementation et semble-t-il, en accord avec ses propres principes et valeurs… C’est ce que nous nommons le rapport au temps. D’où, en signalant que l’emploi du temps individuel et sa rétribution constituent les principaux objets de transaction dans le monde salarial, on conçoit donc que le rapport au temps est l’élément structurant de la culture professionnelle. Celle-ci correspond à un ensemble de prescriptions et/ou de proscriptions, de manières de se comporter, d’agir… relevant a priori d’un bon sens (professionnel partagé par les membres d’un groupe professionnel. Cette culture professionnelle amalgame, englobe et transcende les cultures spécifiques d’entreprise. Chez les agents d’animation, par exemple, quel que soit l’employeur, chacun trouve « normal » de travailler dans un temps scandé et « déritualisé », haché et fragmenté, bref décalé de la temporalité sociale dominante, là où, ailleurs, dans un autre domaine d’activité, cette situation aurait été jugée inacceptable ou refusée… De même que l’animateur attend que son travail lui donne plaisir et respecte sa vie personnelle, ce qui n’est pas forcément vrai chez le salarié ordinaire.Sociography of a « culture of time » as a foundation of professional cultureThe example of sociocultural officersWorking for a company means renting to it for money a part of a personal time. This time is used according law, branch agreements and company level. But, in certain conditions, for some personal

  6. COX-2-dependent PGE2 acts as a growth factor in mycosis fungoides (MF)

    Kopp, Katharina Luise Maria; Kauczok, C. S.; Lauenborg, Britt Thyssing


    production of PGE(2) in malignant T cells in vitro. These cells express prostaglandin receptors EP3 and EP4 and the receptor antagonist as well as small interfering RNA (siRNA) directed against COX-2, and specific COX-2 inhibitors strongly reduce their spontaneous proliferation. In conclusion, our data...... in prostaglandin synthesis. Aberrant COX-2 expression and prostaglandin E(2) (PGE(2)) production have been implicated in tumorigenesis. In this study we show that COX-2 is ectopically expressed in malignant T-cell lines from patients with cutaneous T-cell lymphoma (CTCL) as well as in situ in lymphocytic cells...... in 21 out of 22 patients suffering from mycosis fungoides (MF) in plaque or tumor stage. COX-2 is not expressed in lymphocytes of 11 patients with patch-stage MF, whereas sporadic COX-2 staining of stromal cells is observed in the majority of patients. COX-2 expression correlates with a constitutive...

  7. Chandra reveals a black-hole X-ray binary within the ultraluminous supernova remnant MF 16

    Roberts, T P


    We present evidence, based on Chandra ACIS-S observations of the nearby spiral galaxy NGC 6946, that the extraodinary X-ray luminosity of the MF 16 supernova remnant actually arises in a black-hole X-ray binary. This conclusion is drawn from the point-like nature of the X-ray source, its X-ray spectrum closely resembling the spectrum of other ultraluminous X-ray sources thought to be black-hole X-ray binary systems, and the detection of rapid hard X-ray variability from the source. We briefly discuss the nature of the hard X-ray variability, and the origin of the extreme radio and optical luminosity of MF 16 in light of this identification.

  8. Influence of gravity waves and tides on mesospheric temperature inversion layers: simultaneous Rayleigh lidar and MF radar observations

    Sridharan, S. [National Atmospheric Research Lab., Chittoor (India); Sathishkumar, S.; Gurubaran, S. [Indian Inst. of Geomagnetism, Tirunelveli (India). Equatorial Geophysical Research Lab.


    Three nights of simultaneous Rayleigh lidar temperature measurements over Gadanki (13.5 N,79.2 E) and medium frequency (MF) radar wind measurements over Tirunelveli (8.7 N,77.8 E) have been analyzed to illustrate the possible effects due to tidal-gravity wave interactions on upper mesospheric inversion layers. The occurrence of tidal gravity wave interaction is investigated using MF radar wind measurements in the altitude region 86-90 km. Of the three nights, it is found that tidal gravity wave interaction occurred in two nights. In the third night, diurnal tidal amplitude is found to be significantly larger. As suggested in Sica et al. (2007), mesospheric temperature inversion seems to be a signature of wave saturation in the mesosphere, since the temperature inversion occurs at heights, when the lapse rate is less than half the dry adiabatic lapse rate. (orig.)

  9. Influence of gravity waves and tides on mesospheric temperature inversion layers: simultaneous Rayleigh lidar and MF radar observations

    Sridharan, S.; Sathishkumar, S.; Gurubaran, S.


    Three nights of simultaneous Rayleigh lidar temperature measurements over Gadanki (13.5° N, 79.2° E) and medium frequency (MF) radar wind measurements over Tirunelveli (8.7° N, 77.8° E) have been analyzed to illustrate the possible effects due to tidal-gravity wave interactions on upper mesospheric inversion layers. The occurrence of tidal gravity wave interaction is investigated using MF radar wind measurements in the altitude region 86 90 km. Of the three nights, it is found that tidal gravity wave interaction occurred in two nights. In the third night, diurnal tidal amplitude is found to be significantly larger. As suggested in Sica et al. (2007), mesospheric temperature inversion seems to be a signature of wave saturation in the mesosphere, since the temperature inversion occurs at heights, when the lapse rate is less than half the dry adiabatic lapse rate.

  10. Cross-species bacterial artificial chromosome (BAC) library screening via overgo-based hybridization and BAC-contig mapping of a yield enhancement quantitative trait locus (QTL) yld1.1 in the Malaysian wild rice Oryza rufipogon.

    Song, Beng-Kah; Nadarajah, Kalaivani; Romanov, Michael N; Ratnam, Wickneswari


    The construction of BAC-contig physical maps is an important step towards a partial or ultimate genome sequence analysis. Here, we describe our initial efforts to apply an overgo approach to screen a BAC library of the Malaysian wild rice species, Oryza rufipogon. Overgo design is based on repetitive element masking and sequence uniqueness, and uses short probes (approximately 40 bp), making this method highly efficient and specific. Pairs of 24-bp oligos that contain an 8-bp overlap were developed from the publicly available genomic sequences of the cultivated rice, O. sativa, to generate 20 overgo probes for a 1-Mb region that encompasses a yield enhancement QTL yld1.1 in O. rufipogon. The advantages of a high similarity in melting temperature, hybridization kinetics and specific activities of overgos further enabled a pooling strategy for library screening by filter hybridization. Two pools of ten overgos each were hybridized to high-density filters representing the O. rufipogon genomic BAC library. These screening tests succeeded in providing 69 PCR-verified positive hits from a total of 23,040 BAC clones of the entire O. rufipogon library. A minimal tilling path of clones was generated to contribute to a fully covered BAC-contig map of the targeted 1-Mb region. The developed protocol for overgo design based on O. sativa sequences as a comparative genomic framework, and the pooled overgo hybridization screening technique are suitable means for high-resolution physical mapping and the identification of BAC candidates for sequencing.

  11. Construction of a BAC library from cucumber (Cucumis sativus L.) and identification of linkage group specific clones

    Yuan Guan; Qi Chen; Junsong Pan; Zheng Li; Huanle He; Aizhong Wu; Rentao Song; Run Cai


    A bacterial artificial chromosome (BAC) library consisting of 19,200 clones with an average insert size of 105 kb has been constructed from a cucumber (Cucumis sativus L.) inbred line S94, derived from a cultivar in North China. The entire library was equivalent to approximately 5 haploid cucumber genomes. To facilitate chromosome engineering and anchor the cucumber genetic linkage map to its chromosomes, 15 sequence-characterized amplified regions (SCAR) and seven simple sequence repeats (SSR) markers from each link-age group of cucumber were used to screen an ordered array of pooled BAC DNA with polymerase chain reaction (PCR). Fifteen mark-ers gave at least two positive clones. As a result, 22 BAC clones representing 7 linkage groups of cucumber were identified, which further validated the genome coverage and utility of the library. This BAC library and linkage group specific clones provide essential resources for future research of the cucumber genome.

  12. A Bac Library and Paired-PCR Approach to Mapping and Completing the Genome Sequence of Sulfolobus Solfataricus P2

    She, Qunxin; Confalonieri, F.; Zivanovic, Y.;


    -productive because there was a high sequence bias in the cosmid and lambda libraries. Therefore, a new approach was devised for linking the sequenced regions which may be generally applicable. BAC libraries were constructed and terminal sequences of the clones were determined and used for both end mapping and PCR...... screening. The PCR approaches included a novel chromosome walking method termed “paired-PCR”. 21 gaps were filled by BAC end sequence analyses and 6 gaps were filled by PCR including three large ones by paired-PCR. The complete map revealed that 0.9 Mb remained to be sequenced and 34 BAC clones were...... selected for walking over small gaps and preparing template libraries for larger ones. It is concluded that an optimal strategy for sequencing microorganism genomes involves construction of a high-resolution physical map by BAC end analyses, PCR screening and paired-PCR chromosome walking after about half...

  13. Spanish validation of the Brief Assessment in Cognition in Schizophrenia (BACS) in patients with schizophrenia and healthy controls.

    Segarra, N; Bernardo, M; Gutierrez, F; Justicia, A; Fernadez-Egea, E; Allas, M; Safont, G; Contreras, F; Gascon, J; Soler-Insa, P A; Menchon, J M; Junque, C; Keefe, R S E


    Neurocognitive impairment is a core feature of schizophrenia and is closely associated with functional outcome. The importance of cognitive assessment is broadly accepted today, and an easy-to-use, internationality validated cognitive assessment tool is needed by researchers and in daily clinical practice. The Brief Assessment of Cognition in Schizophrenia (BACS) has been validated in English, French, Japanese and Italian. It is as sensitive to cognitive dysfunction as a standard test battery, with the advantage of requiring less than 35minutes to complete. In our study, we tested the psychometric characteristics of a Spanish version of the BACS in 117 patients with schizophrenia-spectrum disorders and 36 healthy controls. All BACS cognitive subtests discriminated between patients and controls (PBACS and a traditional neuropsychological test battery was similar to that reported in other languages. We conclude that the BACS can facilitate the comparison of the cognitive performance of patients with schizophrenia in many different countries.

  14. Pig transgenesis by piggyBac transposition in combination with somatic cell nuclear transfer.

    Wu, Zhenfang; Xu, Zhiqian; Zou, Xian; Zeng, Fang; Shi, Junsong; Liu, Dewu; Urschitz, Johann; Moisyadi, Stefan; Li, Zicong


    The production of animals by somatic cell nuclear transfer (SCNT) is inefficient, with approximately 2% of micromanipulated oocytes going to term and resulting in live births. However, it is the most commonly used method for the generation of cloned transgenic livestock as it facilitates the attainment of transgenic animals once the nuclear donor cells are stably transfected and more importantly as alternatives methods of transgenesis in farm animals have proven even less efficient. Here we describe piggyBac-mediated transposition of a transgene into porcine primary cells and use of these genetically modified cells as nuclear donors for the generation of transgenic pigs by SCNT. Gene transfer by piggyBac transposition serves to provide an alternative approach for the transfection of nuclear donor cells used in SCNT.

  15. Tensile bond strength between auto-polymerized acrylic resin and acrylic denture teeth treated with MF-MA solution


    PURPOSE This study evaluated the effect of chemical surface treatment using methyl formate-methyl acetate (MF-MA) solution on the tensile bond strength between acrylic denture teeth and auto-polymerized acrylic resin. MATERIALS AND METHODS Seventy maxillary central incisor acrylic denture teeth for each of three different brands (Yamahachi New Ace; Major Dent; Cosmo HXL) were embedded with incisal edge downwards in auto-polymerized resin in polyethylene pipes and ground with silicone carbide paper on their ridge lap surfaces. The teeth of each brand were divided into seven groups (n=10): no surface treatment (control group), MF-MA solution at a ratio of 25:75 (v/v) for 15 seconds, 30 seconds, 60 seconds, 120 seconds, 180 seconds, and MMA for 180 seconds. Auto-polymerized acrylic resin (Unifast Trad) was applied to the ground surface and polymerized in a pressure cooker. A tensile strength test was performed with a universal testing machine. Statistical analysis of the results was performed using two-way analysis of variance (ANOVA) and post-hoc Dunnett T3 test (α=.05). RESULTS The surface treatment groups had significantly higher mean tensile bond strengths compared with the control group (P.05), except for the Yamahachi New Ace MF-MA 180-second group (P<.05). CONCLUSION 15-second MF-MA solution can be an alternative chemical surface treatment for repairing a denture base and rebonding acrylic denture teeth with auto-polymerized acrylic resin, for both conventional and cross-linked teeth. PMID:27555897

  16. Decreased Pollen Viability and Thicken Pollen Intine in Antisense Silenced Brassica campestris Mutant of BcMF19

    LIU Jin-long; GAO Ming-hui; LIU Ying; CAO Jia-shu


    Brassica campestris male fertility 19 (BcMF19;GenBank accession number GQ902048.1), a gene that is specially expressed in tapetum cells and microspores during anther development in B. campestris ssp. chinensis, which is learned from the previous in situ hybridization study. In the present study, we constructed antisense-silenced plants of BcMF19 using B. campestris ssp. chinensis to validate this prediction. The morphology of the pistils, long anthers, and short anthers was signiifcantly affected in 35sbcmf19 compared with the control samples. 4´-6-Diamidino-2-phenylindole staining revealed that two generative nuclei and one large vegetative nucleus were not affected in the mutant compared with control. Statistical analysis of Alexander’s staining results showed that 96% of the control pollen grains had vitality, whereas only 86% of the mutant pollen grains did. Under scanning electron microscopy, the mutant demonstrated numerous abnormal pollen grains and resembled dried persimmon. The frequency of normal pollen grains was approximately 18%. Under transmission electron microscopy, the pollen intine during the binucleate and mature pollen stages in 35sbcmf19 exhibited abnormal thickening, especially at the germinal furrows, compared with control. In vitro pollen germination test showed that the tips of the mutant pollen tubes transformed into globular alveoli and stopped growing compared with control. On the other hand, in vivo pollen germination test suggested that BcMF19 affected the pollen tube extension in the pistil. These ifndings indicate that BcMF19 is essential to the pollen development and pollen tube extension of B. campestris ssp. chinensis.

  17. Versatile P(acman) BAC Libraries for Transgenesis Studies in Drosophila melanogaster

    Venken, Koen J.T.; Carlson, Joseph W.; Schulze, Karen L.; Pan, Hongling; He, Yuchun; Spokony, Rebecca; Wan, Kenneth H.; Koriabine, Maxim; de Jong, Pieter J.; White, Kevin P.; Bellen, Hugo J.; Hoskins, Roger A.


    We constructed Drosophila melanogaster BAC libraries with 21-kb and 83-kb inserts in the P(acman) system. Clones representing 12-fold coverage and encompassing more than 95percent of annotated genes were mapped onto the reference genome. These clones can be integrated into predetermined attP sites in the genome using Phi C31 integrase to rescue mutations. They can be modified through recombineering, for example to incorporate protein tags and assess expression patterns.

  18. BacMam immunization partially protects pigs against sublethal challenge with African swine fever virus.

    Argilaguet, Jordi M; Pérez-Martín, Eva; López, Sergio; Goethe, Martin; Escribano, J M; Giesow, Katrin; Keil, Günther M; Rodríguez, Fernando


    Lack of vaccines and efficient control measures complicate the control and eradication of African swine fever (ASF). Limitations of conventional inactivated and attenuated virus-based vaccines against African swine fever virus (ASFV) highlight the need to use new technologies to develop efficient and safe vaccines against this virus. With this aim in mind, in this study we have constructed BacMam-sHAPQ, a baculovirus based vector for gene transfer into mammalian cells, expressing a fusion protein comprising three in tandem ASFV antigens: p54, p30 and the extracellular domain of the viral hemagglutinin (secretory hemagglutinin, sHA), under the control of the human cytomegalovirus immediate early promoter (CMVie). Confirming its correct in vitro expression, BacMam-sHAPQ induced specific T-cell responses directly after in vivo immunization. Conversely, no specific antibody responses were detectable prior to ASFV challenge. The protective potential of this recombinant vaccine candidate was tested by a homologous sublethal challenge with ASFV following immunization. Four out of six immunized pigs remained viremia-free after ASFV infection, while the other two pigs showed similar viremic titres to control animals. The protection afforded correlated with the presence of a large number of virus-specific IFNγ-secreting T-cells in blood at 17 days post-infection. In contrast, the specific antibody levels observed after ASFV challenge in sera from BacMam-sHAPQ immunized pigs were indistinguishable from those found in control pigs. These results highlight the importance of the cellular responses in protection against ASFV and point towards BacMam vectors as potential tools for future vaccine development.

  19. Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

    Feltus F


    Full Text Available Abstract Background We investigate if pooling BAC clones and sequencing the pools can provide for more accurate assembly of genome sequences than the "whole genome shotgun" (WGS approach. Furthermore, we quantify this accuracy increase. We compare the pooled BAC and WGS approaches using in silico simulations. Standard measures of assembly quality focus on assembly size and fragmentation, which are desirable for large whole genome assemblies. We propose additional measures enabling easy and visual comparison of assembly quality, such as rearrangements and redundant sequence content, relative to the known target sequence. Results The best assembly quality scores were obtained using 454 coverage of 15× linear and 5× paired (3kb insert size reads (15L-5P on Arabidopsis. This regime gave similarly good results on four additional plant genomes of very different GC and repeat contents. BAC pooling improved assembly scores over WGS assembly, coverage and redundancy scores improving the most. Conclusions BAC pooling works better than WGS, however, both require a physical map to order the scaffolds. Pool sizes up to 12Mbp work well, suggesting this pooling density to be effective in medium-scale re-sequencing applications such as targeted sequencing of QTL intervals for candidate gene discovery. Assuming the current Roche/454 Titanium sequencing limitations, a 12 Mbp region could be re-sequenced with a full plate of linear reads and a half plate of paired-end reads, yielding 15L-5P coverage after read pre-processing. Our simulation suggests that massively over-sequencing may not improve accuracy. Our scoring measures can be used generally to evaluate and compare results of simulated genome assemblies.

  20. Observation et commande par retour d'état d'un procédé de bacs communicants

    Hably, Ahmad; Dumon, Jonathan


    International audience; Cet article présente une maquette pédagogique composée des trois bacs communicants. Une approche basée sur la représentation d'état est développée pour observer et asservir les niveaux d'eau dans les trois bacs. Les résultats sont validés en simulation et en pratique.

  1. Molecular cloning and characterization of a novel pollen predominantly membrane protein gene BcMF12 from Brassica campestris ssp. chinensis.

    Song, Jianghua; Zhang, Lixin; Cao, Jiashu


    A novel membrane protein gene, BcMF12, was isolated from Chinese cabbage (Brassica campestris L. ssp. chinensis Makino) using rapid amplification of the cDNA ends based on a pollen-specific cDNA fragment (DN237936). The cDNA was 1,155 bp in length with an open reading frame of 894 bp capable of encoding a putative polypeptide of 297 amino acids with an estimated molecular mass of 34.6 kDa and a predicted isoelectric point of 9.6. Comparative and bioinformatics analyses revealed that BcMF12 showed high similarities with some membrane protein sequences previously published in the public database and contained six highly conserved transmembrane domains corresponding to six highly hydrophobic regions. This indicates that BcMF12 may be a putative membrane protein. RNA gel blot analysis indicated that the transcripts of BcMF12 were abundant in the flower bud, flower and anther, but not detected in the root, stem, leaf and pistil. Moreover, the BcMF12 transcripts were detectable at the late stages of pollen development. Morphological investigations of pollen from the BcMF12 antisense transgenic plants showed that most of pollen grains of transgenic plants were abnormal. These results strongly suggest that BcMF12 is a novel pollen-preferentially membrane protein which play an important role during the pollen development in Chinese cabbage.

  2. A BAC-based transgenic mouse specifically expresses an inducible Cre in the urothelium.

    Tian Huai Shen

    Full Text Available Cre-loxp mediated conditional knockout strategy has played critical roles for revealing functions of many genes essential for development, as well as the causal relationships between gene mutations and diseases in the postnatal adult mice. One key factor of this strategy is the availability of mice with tissue- or cell type-specific Cre expression. However, the success of the traditional molecular cloning approach to generate mice with tissue specific Cre expression often depends on luck. Here we provide a better alternative by using bacterial artificial chromosome (BAC-based recombineering to insert iCreERT2 cDNA at the ATG start of the Upk2 gene. The BAC-based transgenic mice express the inducible Cre specifically in the urothelium as demonstrated by mRNA expression and staining for LacZ expression after crossing with a Rosa26 reporter mouse. Taking into consideration the size of the gene of interest and neighboring genes included in a BAC, this method should be widely applicable for generation of mice with tissue specific gene expression or deletions in a more specific manner than previously reported.

  3. Study on the Mitochondrial Genome of Sea Island Cotton (Gossypium barbadense) by BAC Library Screening

    SU Ai-guo; LI Shuang-shuang; LIU Guo-zheng; LEI Bin-bin; KANG Ding-ming; LI Zhao-hu; MA Zhi-ying; HUA Jin-ping


    The plant mitochondrial genome displays complex features, particularly in terms of cytoplasmic male sterility (CMS). Therefore, research on the cotton mitochondrial genome may provide important information for analyzing genome evolution and exploring the molecular mechanism of CMS. In this paper, we present a preliminary study on the mitochondrial genome of sea island cotton (Gossypium barbadense) based on positive clones from the bacterial artiifcial chromosome (BAC) library. Thirty-ifve primers designed with the conserved sequences of functional genes and exons of mitochondria were used to screen positive clones in the genome library of the sea island cotton variety called Pima 90-53. Ten BAC clones were obtained and veriifed for further study. A contig was obtained based on six overlapping clones and subsequently laid out primarily on the mitochondrial genome. One BAC clone, clone 6 harbored with the inserter of approximate 115 kb mtDNA sequence, in which more than 10 primers fragments could be ampliifed, was sequenced and assembled using the Solexa strategy. Fifteen mitochondrial functional genes were revealed in clone 6 by gene annotation. The characteristics of the syntenic gene/exon of the sequences and RNA editing were preliminarily predicted.

  4. An anchored framework BAC map of mouse chromosome 11 assembled using multiplex oligonucleotide hybridization.

    Cai, W W; Reneker, J; Chow, C W; Vaishnav, M; Bradley, A


    Despite abundant library resources for many organisms, physical mapping of these organisms has been seriously limited due to lack of efficient library screening techniques. We have developed a highly efficient strategy for large-scale screening of genomic libraries based on multiplex oligonucleotide hybridization on high-density genomic filters. We have applied this strategy to generate a bacterial artificial chromosome (BAC) anchored map of mouse chromosome 11. Using the MIT mouse SSLP data, 320 pairs of oligonucleotide probes were designed with an "overgo" computer program that selects new primer sequences that avoid the microsatellite repeat. BACs identified by these probes are automatically anchored to the chromosome. Ninety-two percent of the probes identified positive clones from a 5.9-fold coverage mouse BAC library with an average of 7 positive clones per marker. An average of 4.2 clones was confirmed for 204 markers by PCR. Our data show that a large number of clones can be efficiently isolated from a large genomic library using this strategy with minimal effort. This strategy will have wide application for large-scale mapping and sequencing of human and other large genomes.

  5. A Tie2-driven BAC-TRAP transgenic line for in vivo endothelial gene profiling.

    Santhosh, Devi; Huang, Zhen


    Recent technological innovations including bacterial artificial chromosome-based translating ribosome affinity purification (BAC-TRAP) have greatly facilitated analysis of cell type-specific gene expression in vivo, especially in the nervous system. To better study endothelial gene expression in vivo, we have generated a BAC-TRAP transgenic mouse line where the L10a ribosomal subunit is tagged with EGFP and placed under the control of the endothelium-specific Tie2 (Tek) promoter. We show that transgene expression in this line is widely, but specifically, detected in endothelial cells in several brain regions throughout pre- and postnatal development, as well as in other organs. We also show that this line results in highly significant enrichment of endothelium-specific mRNAs from brain tissues at different stages. This BAC-TRAP line therefore provides a useful genetic tool for in vivo endothelial gene profiling under various developmental, physiological, and pathological conditions. genesis 54:136-145, 2016. © 2016 Wiley Periodicals, Inc.

  6. Fluorescence in situ hybridization with Bacterial Artificial Chromosomes (BACs) to mitotic heterochromatin of Drosophila.

    Accardo, Maria Carmela; Dimitri, Patrizio


    The organization of eukaryotic chromosomes into euchromatin and heterochromatin represents an enigmatic aspect of genome evolution. Constitutive heterochromatin is a basic, yet still poorly understood component of eukaryotic genomes and its molecular characterization by means of standard genomic approaches is intrinsically difficult. Drosophila melanogaster polytene chromosomes do not seem to be particularly useful to map heterochromatin sequences because the typical features of heterochromatin, organized as it is into a chromocenter, limit cytogenetic analysis. In contrast, constitutive heterochromatin has been well-defined at the cytological level in mitotic chromosomes of neuroblasts and has been subdivided into several bands with differential staining properties. Fluorescence in situ hybridization (FISH) using Bacterial Artificial Chromosomes (BAC) probes that carry large genomic portions defined by sequence annotation has yielded a "revolution" in the field of cytogenetics because it has allowed the mapping of multiple genes at once, thus rendering constitutive heterochromatin amenable to easy and fast cytogenetics analyses. Indeed, BAC-based FISH approaches on Drosophila mitotic chromosomes have made it possible to correlate genomic sequences to their cytogenetic location, aiming to build an integrated map of the pericentric heterochromatin. This chapter presents our standard protocols for BAC-based FISH, aimed at mapping large chromosomal regions of mitotic heterochromatin in Drosophila melanogaster.

  7. Assessment of acrylamide degradation potential of Pseudomonas aeruginosa BAC-6 isolated from industrial effluent.

    Chandrashekar, Vijayashree; Chandrashekar, Chandrika; Shivakumar, Rajath; Bhattacharya, Sourav; Das, Arijit; Gouda, Bhaskar; Rajan, Subbaramiah Sundara


    Acrylamide finds diverse industrial applications but is considered an environmental threat because of its neurotoxic, carcinogenic, and teratogenic effects. Certain bacteria enzymatically degrade acrylamide to acrylic acid and ammonia. The present investigation was carried out to isolate and identify an acrylamide-degrading bacterium from industrial effluent. Bacterial growth and extent of acrylamide degradation in the presence of different acrylamide concentrations, nutrients, varied range of pH, and temperature were analyzed. Among the eight acrylamide-degrading isolates, isolate BAC-6 demonstrated the highest degradation, and based upon the partial 16S rDNA sequencing, it was identified as Pseudomonas aeruginosa. P. aeruginosa BAC-6 grew over a wide range of acrylamide concentrations, but the highest degradation was recorded at 500 mg/L concentration with concomitant cell growth. Among the carbon supplements, mannitol supported the highest growth and degradation. Maximum degradation was reported at neutral pH. A mesophilic temperature range (25-40 °C) facilitated conducive bacterial growth followed by degradation. The highest degradation and bacterial growth were observed at 30 and 35 °C, respectively. Thus, it could be inferred from the present investigation that cultural conditions strongly affected the degradation potential of P. aeruginosa BAC-6 and advocated the utilization of the isolate in bioremediation of sites polluted with acrylamide.

  8. A new active piggyBac-like element in Aphis gossypii

    Guana-Hua Luo; Min Wu; Xiao-Fang Wang; Wei Zhang; Zhao-Jun Han


    Nine piggyBac-like elements (PLEs) were identified from the cotton aphid Aphis gossypii Glover.All the PLEs shared high sequence similarity with each other.However,eight of the nine PLEs were unlikely to encode functional transposase due to the existence of disruptive mutations within the coding regions.The other one PLE contained major characteristics of members in the piggyBac family,including TTAA target site duplications,inverted terminal repeats (ITRs),and an open reading frame (ORF) coding for a transposase with a putative DDD domain.This one with an intact transposase ORF was named AgoPLE1.1.The predicted transposase shared 47% similarity with that of Trichoplusia ni piggyBac IFP2.Phylogenetic analyses showed that AgoPLE1.1 was most related to the Heliothis virescens PLEl.1 (HvPLEl.1) element,with 45% and 60% similarity at the nucleotide and amino acid levels,respectively.A functional assay demonstrated that AgoPLEl.1 encoded a functional transposase and was able to cause precise excision in cell cultures.On the other hand,few genomic insertion polymorphisms of AgoPLE1 were observed in the genome of the cotton aphid.These observations suggested that AgoPLEl.1 was a PLE that invaded the cotton aphid genome in recent periods and retained its activity.

  9. A BAC-based physical map of the Drosophila buzzatii genome

    Gonzalez, Josefa; Nefedov, Michael; Bosdet, Ian; Casals, Ferran; Calvete, Oriol; Delprat, Alejandra; Shin, Heesun; Chiu, Readman; Mathewson, Carrie; Wye, Natasja; Hoskins, Roger A.; Schein, JacquelineE.; de Jong, Pieter; Ruiz, Alfredo


    Large-insert genomic libraries facilitate cloning of large genomic regions, allow the construction of clone-based physical maps and provide useful resources for sequencing entire genomes. Drosophilabuzzatii is a representative species of the repleta group in the Drosophila subgenus, which is being widely used as a model in studies of genome evolution, ecological adaptation and speciation. We constructed a Bacterial Artificial Chromosome (BAC) genomic library of D. buzzatii using the shuttle vector pTARBAC2.1. The library comprises 18,353 clones with an average insert size of 152 kb and a {approx}18X expected representation of the D. buzzatii euchromatic genome. We screened the entire library with six euchromatic gene probes and estimated the actual genome representation to be {approx}23X. In addition, we fingerprinted by restriction digestion and agarose gel electrophoresis a sample of 9,555 clones, and assembled them using Finger Printed Contigs (FPC) software and manual editing into 345 contigs (mean of 26 clones per contig) and 670singletons. Finally, we anchored 181 large contigs (containing 7,788clones) to the D. buzzatii salivary gland polytene chromosomes by in situ hybridization of 427 representative clones. The BAC library and a database with all the information regarding the high coverage BAC-based physical map described in this paper are available to the research community.

  10. A high-resolution PAC and BAC map of the SCA2 region.

    Nechiporuk, T; Nechiporuk, A; Sahba, S; Figueroa, K; Shibata, H; Chen, X N; Korenberg, J R; de Jong, P; Pulst, S M


    The spinocerebellar ataxia type 2 (SCA2) gene has been localized to chromosome 12q24.1. To characterize this region and to aid in the identification of the SCA2 gene, we have constructed a 3.9-Mb physical map, which covers markers D12S1328 and D12S1329 known to flank the gene. The map comprises a contig of 84 overlapping yeast artificial chromosomes (YACs), P1 artificial chromosomes (PACs), and bacterial artificial chromosomes (BACs) onto which we placed 82 PCR markers. We localized eight genes and expressed sequence tags on this map, many of which had not been precisely mapped before. In contrast to YACs, which showed a high degree of chimerism and deletions in this region, PACs and BACs were stable. Only 1 in 65 PACs contained a small deletion, and 2 in 18 BACs were chimeric. The high-resolution physical map, which was used in the identification of the SCA2 gene, will be useful for the positional cloning of other disease genes mapped to this region.

  11. Enforcement following 0.08% BAC law change: sex-specific consequences of changing arrest practices?

    Schwartz, Jennifer; Davaran, Ardavan


    This research evaluated effects of stricter 0.08% BAC drunken driving law on changes in sex-specific DUI arrest rates, controlling for increased law enforcement resources and shifts in DUI-related behaviors. Another main purpose, the study assessed female/male differences in arrest increases due to broader enforcement standards and efforts. Panel data was assembled for 24 states over 1990-2007 on DUI arrests, alcohol policy, law enforcement resources, drinking and drunken driving prevalence. Two-way fixed-effects seemingly unrelated regression models predicted female versus male changes in DUI arrests following implementation of lower legal limits of intoxication, net controls. Findings suggest, first, that a broader legal definition of drunken driving intending to officially sanction less serious offenders (0.08% vs. 0.10% BAC) was associated with increased DUI arrests for both sexes. Second, growth in specialized DUI-enforcement units also was related to increased arrests. Whereas male and female arrest trends were equally affected by the direct net-widening effects of 0.08% BAC alcohol-policy, specialized DUI-enforcement efforts to dig deeper into the offender-pool had stronger arrest-producing effects on females, particularly prior to law change. Specifying how changes in law and enforcement resources affect arrest outcomes is an important pre-cursor to alcohol-policy analyses of effectiveness. A potential unintended consequence, effects of law and enforcement may differ across population segments. Copyright © 2013 Elsevier Ltd. All rights reserved.

  12. Large-insert BAC/YAC libraries for selective re-isolation of genomic regions by homologous recombination in yeast.

    Zeng, C; Kouprina, N; Zhu, B; Cairo, A; Hoek, M; Cross, G; Osoegawa, K; Larionov, V; de Jong, P


    We constructed representative large-insert bacterial artificial chromosome (BAC) libraries of two human pathogens (Trypanosoma brucei and Giardia lamblia) using a new hybrid vector, pTARBAC1, containing a yeast artificial chromosome (YAC) cassette (a yeast selectable marker and a centromere). The cassette allows transferring of BACs into yeast for their further modification. Furthermore, the new hybrid vector provides the opportunity to re-isolate each DNA insert without construction of a new library of random clones. Digestion of a BAC DNA by an endonuclease that has no recognition site in the vector, but which deletes most of the internal insert sequence and leaves the unique flanking sequences, converts a BAC into a TAR vector, thus allowing direct gene isolation. Cotransformation of a TAR vector and genomic DNA into yeast spheroplasts, and subsequent recombination between the TAR vector's flanking ends and a specific genomic fragment, allows rescue of the fragment as a circular YAC/BAC molecule. Here we prove a new cloning strategy by re-isolation of randomly chosen genomic fragments of different size from T. brucei cloned in BACs. We conclude that genomic regions of unicellular eukaryotes can be easily re-isolated using this technique, which provides an opportunity to study evolution of these genomes and the role of genome instability in pathogenicity.

  13. Controlling of crustacean zooplankton reproduction in biological activated carbon (BAC) filters by strengthen operation and management of conventional process

    LIU Li-jun; ZHANG Jin-song; LI Xiao-wei; HE Jun-guo


    To counter the mass reproduction and penetration of crustacean zooplankton in Biological Activated Carbon (BAC) filters which may result in the presence of organisms in potable water and water pollution,this paper analyzed the factors affecting organisms' reproduction in BAC filters.A comparative study was performed on the density and composition of crustacean zooplankton of the concerned water treatment units of two advanced water plants (Plant A and B) which with the same raw water and the same treatment technique in southern China.The results obtained show that the crustaceans' density and composition was very different between the sand filtered water of Plant A and Plant B.which Harpacticoida bred sharply in the sediment tanks and penetrated sand filter into BAC falters was the primary reason of crustaceans reproduce in BAC filters of Plant A.For prevention of the organisms reproduction in BAC,some strengthen measures was taken including pre-chlorination,cleaning coagulation tanks and sediment tanks completely,increasing sludge disposal frequency to stop organisms enter BAC filters,and the finished water quality was improved and enhanced.

  14. 利用Bac-to-Bac杆状病毒表达系统在家蚕中表达人生长素%Expression of Human Growth Hormone in Bombyx mori Using Bacto-Bac Baculovirus Expression System

    付凡; 陈蔚; 唐顺明; 汪生鹏; 黄金山; 赵巧玲; 沈兴家


    Human growth hormone (hGH) secreted by adenohypophysis plays an important role in human growth, development and metabolism, showing extensive physiological functions. Using Bac-to-Bac expression system of Bombyx mori nuclepolyhedrovirus ( BmNPV), a hgh gene was cloned into a baculovirus transfer vector pFastBacHTb which was used to transform BmDH10Bac to prepare recombinant shuttle vector Bacmid-hgh through bacterial transposition. The recombinant plasmid Bacmid-hgh was used to transfect BmN cells to obtain the recombinant baculovirus containing human growth gene hgh. The recombinant baculovirus was used to infect BmN cells and the recombinant virus was collected and used to inoculate newly exuviated Bombyx mori larvae of the 5th instar. After 3 d, the larvae showed symptom of infection by baculovirus. SDS-PAGE and Western blotting detected target protein with molecular weight of approximately 20 kD in hemolymph of the larvae, indicating that human growth hormone had been successfully expressed in Bombyx mori larvae through Bac-to-Bac system.%人生长素是由腺垂体分泌的一种在人体生长、发育及代谢中发挥重要作用的激素,具有广泛的生理作用.利用家蚕核型多角体病毒(BmNPV)Bac-to-Bac表达系统,将人生长素基因(hgh)克隆到杆状病毒转移载体pFastBacHTb,通过细菌转座子原理,转化BmDH10Bac细胞,获得重组穿梭载体质粒Baemid-hgh,并将其转染家蚕BmN细胞,获得含有hgh的重组杆状病毒.将此重组病毒感染家蚕BmN细胞,收集重组病毒液并穿刺接种家蚕5龄起蚕,3d后观察到家蚕感染了杆状病毒的症状,并通过SDS-PAGE和Western blotting方法在家蚕血液中检测到分子质量约20kD的目的蛋白,袁明人生长素通过Bac-to-Bac 系统在家蚕体内获得了表达.

  15. Comparisons between Canadian prairie MF radars, FPI (green and OH lines and UARS HRDI systems

    C. E. Meek

    Full Text Available Detailed comparisons have been completed between the MF radars (MFR in the Canadian prairies and three other systems: two ground-based Fabry-Perot interferometers (FPI and the UARS high resolution Doppler imager (HRDI system. The radars were at Sylvan Lake (52°N, 114°W, Robsart 
    (49°N, 109°W and the main continuing facility is at Saskatoon (52°N, 107°W. Statistical comparisons of hourly mean winds (1988-1992 for the Saskatoon MFR and FPI (557.7 nm green line using scatter plots, wind speed-ratios, and direction-difference histograms show excellent agreement for Saskatoon. No serious biases in speeds or directions occur at the height of best agreement, 98 km. If anything, the MFR speeds appear bigger. The same applies to the Sylvan Lake MFR and Calgary FPI, where the best height is 88 km. In both cases these are close to the preferred heights for the emission layers. Differences between measurements seen on individual days are likely related to the influence of gravity waves (GW upon the optical and radar systems, each of which have inherent spatial averaging (350, 50 km respectively, as well as the spatial difference between the nominal measurement locations. For HRDI, similar statistical comparisons are made, using single-overpass satellite winds and hourly means (to improve data quality from MFR. Heights of best agreement, based upon direction-difference histograms, are shown; there is a tendency, beginning near 87 km, for these MFR heights to be 2 or 3 km greater than the HRDI heights. Speeds at these heights are typically larger for the satellite (MFR/HRDI = 0.7–0.8. Reasons for the differences are investigated. It is shown that the estimated errors and short-term (90 min differences are larger for HRDI than for the MFR, indicating more noise or GW contamination. This leads to modest but significant differences in median speed-ratio (MFR/HRDI < 1. Also, comparison

  16. A highly redundant BAC library of Atlantic salmon (Salmo salar: an important tool for salmon projects

    Koop Ben F


    Full Text Available Abstract Background As farming of Atlantic salmon is growing as an aquaculture enterprise, the need to identify the genomic mechanisms for specific traits is becoming more important in breeding and management of the animal. Traits of importance might be related to growth, disease resistance, food conversion efficiency, color or taste. To identify genomic regions responsible for specific traits, genomic large insert libraries have previously proven to be of crucial importance. These large insert libraries can be screened using gene or genetic markers in order to identify and map regions of interest. Furthermore, large-scale mapping can utilize highly redundant libraries in genome projects, and hence provide valuable data on the genome structure. Results Here we report the construction and characterization of a highly redundant bacterial artificial chromosome (BAC library constructed from a Norwegian aquaculture strain male of Atlantic salmon (Salmo salar. The library consists of a total number of 305 557 clones, in which approximately 299 000 are recombinants. The average insert size of the library is 188 kbp, representing 18-fold genome coverage. High-density filters each consisting of 18 432 clones spotted in duplicates have been produced for hybridization screening, and are publicly available 1. To characterize the library, 15 expressed sequence tags (ESTs derived overgos and 12 oligo sequences derived from microsatellite markers were used in hybridization screening of the complete BAC library. Secondary hybridizations with individual probes were performed for the clones detected. The BACs positive for the EST probes were fingerprinted and mapped into contigs, yielding an average of 3 contigs for each probe. Clones identified using genomic probes were PCR verified using microsatellite specific primers. Conclusion Identification of genes and genomic regions of interest is greatly aided by the availability of the CHORI-214 Atlantic salmon BAC

  17. Generation of a BAC-based physical map of the melon genome

    Puigdomènech Pere


    Full Text Available Abstract Background Cucumis melo (melon belongs to the Cucurbitaceae family, whose economic importance among horticulture crops is second only to Solanaceae. Melon has high intra-specific genetic variation, morphologic diversity and a small genome size (450 Mb, which make this species suitable for a great variety of molecular and genetic studies that can lead to the development of tools for breeding varieties of the species. A number of genetic and genomic resources have already been developed, such as several genetic maps and BAC genomic libraries. These tools are essential for the construction of a physical map, a valuable resource for map-based cloning, comparative genomics and assembly of whole genome sequencing data. However, no physical map of any Cucurbitaceae has yet been developed. A project has recently been started to sequence the complete melon genome following a whole-genome shotgun strategy, which makes use of massive sequencing data. A BAC-based melon physical map will be a useful tool to help assemble and refine the draft genome data that is being produced. Results A melon physical map was constructed using a 5.7 × BAC library and a genetic map previously developed in our laboratories. High-information-content fingerprinting (HICF was carried out on 23,040 BAC clones, digesting with five restriction enzymes and SNaPshot labeling, followed by contig assembly with FPC software. The physical map has 1,355 contigs and 441 singletons, with an estimated physical length of 407 Mb (0.9 × coverage of the genome and the longest contig being 3.2 Mb. The anchoring of 845 BAC clones to 178 genetic markers (100 RFLPs, 76 SNPs and 2 SSRs also allowed the genetic positioning of 183 physical map contigs/singletons, representing 55 Mb (12% of the melon genome, to individual chromosomal loci. The melon FPC database is available for download at Conclusions Here we report the construction

  18. Insertion professionnelle et rapport au temps de jeunes ayant interrompu leurs études secondaires

    Claire Turcotte


    Full Text Available Que deviennent, sur le marché du travail, les jeunes qui ont interrompu leurs études secondaires cinq ans après leur sortie de l’école ? Dans quelle mesure leur décision d’interrompre leurs études était-elle liée à leur façon de se définir par rapport au présent comme certaines études ont déjà tenté de le montrer ? Leur orientation par rapport au temps (présent ou futur a-t-elle changé au cours de ces cinq années ? L’objectif de l’article est de présenter les résultats d’une recherche qualitative effectuée à partir d’entrevues semi-structurées sur l’insertion professionnelle et le rapport au temps de jeunes qui ont interrompu leurs études secondaires au Québec. Nous définirons tout d’abord nos perspectives théoriques sur l’insertion professionnelle et le rapport au temps. Puis, nous décrirons les quatre types de jeunes que nous avons construits du point de vue de leur insertion, leur rapport au temps au moment où ils ont quitté l’école et cinq ans après l’interruption de leurs études. Enfin nous vérifierons si ces quatre types de jeunes avaient une façon différente de se situer par rapport au temps.Vocational integration and time orientation of secondary school leaversWhat happens to secondary school leavers in the labor market five years after they left school? To what extent is their decision to drop out associated with a present time orientation as some studies have already showed? Has their time orientation (present or future changed over five years? The objective of the article is to present the results of a qualitative research based on semi-structured interviews on the vocational integration and the time orientation among Quebec secondary school leavers. We will first define our theoretical perspectives on the vocational integration and the time orientation. Then we will describe the four types of youth we have constructed from the point of view of their vocational integration

  19. Construction of an American mink Bacterial Artificial Chromosome (BAC library and sequencing candidate genes important for the fur industry

    Christensen Knud


    Full Text Available Abstract Background Bacterial artificial chromosome (BAC libraries continue to be invaluable tools for the genomic analysis of complex organisms. Complemented by the newly and fast growing deep sequencing technologies, they provide an excellent source of information in genomics projects. Results Here, we report the construction and characterization of the CHORI-231 BAC library constructed from a Danish-farmed, male American mink (Neovison vison. The library contains approximately 165,888 clones with an average insert size of 170 kb, representing approximately 10-fold coverage. High-density filters, each consisting of 18,432 clones spotted in duplicate, have been produced for hybridization screening and are publicly available. Overgo probes derived from expressed sequence tags (ESTs, representing 21 candidate genes for traits important for the mink industry, were used to screen the BAC library. These included candidate genes for coat coloring, hair growth and length, coarseness, and some receptors potentially involved in viral diseases in mink. The extensive screening yielded positive results for 19 of these genes. Thirty-five clones corresponding to 19 genes were sequenced using 454 Roche, and large contigs (184 kb in average were assembled. Knowing the complete sequences of these candidate genes will enable confirmation of the association with a phenotype and the finding of causative mutations for the targeted phenotypes. Additionally, 1577 BAC clones were end sequenced; 2505 BAC end sequences (80% of BACs were obtained. An excess of 2 Mb has been analyzed, thus giving a snapshot of the mink genome. Conclusions The availability of the CHORI-321 American mink BAC library will aid in identification of genes and genomic regions of interest. We have demonstrated how the library can be used to identify specific genes of interest, develop genetic markers, and for BAC end sequencing and deep sequencing of selected clones. To our knowledge, this is the

  20. Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

    Muñoz-Amatriaín, María; Lonardi, Stefano; Luo, MingCheng; Madishetty, Kavitha; Svensson, Jan T; Moscou, Matthew J; Wanamaker, Steve; Jiang, Tao; Kleinhofs, Andris; Muehlbauer, Gary J; Wise, Roger P; Stein, Nils; Ma, Yaqin; Rodriguez, Edmundo; Kudrna, Dave; Bhat, Prasanna R; Chao, Shiaoman; Condamine, Pascal; Heinen, Shane; Resnik, Josh; Wing, Rod; Witt, Heather N; Alpert, Matthew; Beccuti, Marco; Bozdag, Serdar; Cordero, Francesca; Mirebrahim, Hamid; Ounit, Rachid; Wu, Yonghui; You, Frank; Zheng, Jie; Simková, Hana; Dolezel, Jaroslav; Grimwood, Jane; Schmutz, Jeremy; Duma, Denisa; Altschmied, Lothar; Blake, Tom; Bregitzer, Phil; Cooper, Laurel; Dilbirligi, Muharrem; Falk, Anders; Feiz, Leila; Graner, Andreas; Gustafson, Perry; Hayes, Patrick M; Lemaux, Peggy; Mammadov, Jafar; Close, Timothy J


    Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome (BACs) in the physical map were sequenced, fine structure was limited. To gain access to the gene-containing portion of the barley genome at high resolution, we identified and sequenced 15 622 BACs representing the minimal tiling path of 72 052 physical-mapped gene-bearing BACs. This generated ~1.7 Gb of genomic sequence containing an estimated 2/3 of all Morex barley genes. Exploration of these sequenced BACs revealed that although distal ends of chromosomes contain most of the gene-enriched BACs and are characterized by high recombination rates, there are also gene-dense regions with suppressed recombination. We made use of published map-anchored sequence data from Aegilops tauschii to develop a synteny viewer between barley and the ancestor of the wheat D-genome. Except for some notable inversions, there is a high level of collinearity between the two species. The software HarvEST:Barley provides facile access to BAC sequences and their annotations, along with the barley-Ae. tauschii synteny viewer. These BAC sequences constitute a resource to improve the efficiency of marker development, map-based cloning, and comparative genomics in barley and related crops. Additional knowledge about regions of the barley genome that are gene-dense but low recombination is particularly relevant.

  1. A dense genetic linkage map for common carp and its integration with a BAC-based physical map.

    Lan Zhao

    Full Text Available BACKGROUND: Common carp (Cyprinus carpio is one of the most important aquaculture species with an annual global production of 3.4 million metric tons. It is also an important ornamental species as well as an important model species for aquaculture research. To improve the economically important traits of this fish, a number of genomic resources and genetic tools have been developed, including several genetic maps and a bacterial artificial chromosome (BAC-based physical map. However, integrated genetic and physical maps are not available to study quantitative trait loci (QTL and assist with fine mapping, positional cloning and whole genome sequencing and assembly. The objective of this study was to integrate the currently available BAC-based physical and genetic maps. RESULTS: The genetic map was updated with 592 novel markers, including 312 BAC-anchored microsatellites and 130 SNP markers, and contained 1,209 genetic markers on 50 linkage groups, spanning 3,565.9 cM in the common carp genome. An integrated genetic and physical map of the common carp genome was then constructed, which was composed of 463 physical map contigs and 88 single BACs. Combined lengths of the contigs and single BACs covered a physical length of 498.75 Mb, or around 30% of the common carp genome. Comparative analysis between common carp and zebrafish genomes was performed based on the integrated map, providing more insights into the common carp specific whole genome duplication and segmental rearrangements in the genome. CONCLUSION: We integrated a BAC-based physical map to a genetic linkage map of common carp by anchoring BAC-associated genetic markers. The density of the genetic linkage map was significantly increased. The integrated map provides a tool for both genetic and genomic studies of common carp, which will help us to understand the genomic architecture of common carp and facilitate fine mapping and positional cloning of economically important traits for

  2. BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.

    Wu Cheng-Cang


    Full Text Available Background Although second generation sequencing (2GS technologies allow re-sequencing of previously gold-standard-sequenced genomes, whole genome shotgun sequencing and de novo assembly of large and complex eukaryotic genomes is still difficult. Availability of a genome-wide physical map is therefore still a prerequisite for whole genome sequencing for genomes like barley. To start such an endeavor, large insert genomic libraries, i.e. Bacterial Artificial Chromosome (BAC libraries, which are unbiased and representing deep haploid genome coverage, need to be ready in place. Result Five new BAC libraries were constructed for barley (Hordeum vulgare L. cultivar Morex. These libraries were constructed in different cloning sites (HindIII, EcoRI, MboI and BstXI of the respective vectors. In order to enhance unbiased genome representation and to minimize the number of gaps between BAC contigs, which are often due to uneven distribution of restriction sites, a mechanically sheared library was also generated. The new BAC libraries were fully characterized in depth by scrutinizing the major quality parameters such as average insert size, degree of contamination (plate wide, neighboring, and chloroplast, empty wells and off-scale clones (clones with 250 fragments. Additionally a set of gene-based probes were hybridized to high density BAC filters and showed that genome coverage of each library is between 2.4 and 6.6 X. Conclusion BAC libraries representing >20 haploid genomes are available as a new resource to the barley research community. Systematic utilization of these libraries in high-throughput BAC fingerprinting should allow developing a genome-wide physical map for the barley genome, which will be instrumental for map-based gene isolation and genome sequencing.

  3. Toward a molecular cytogenetic map for cultivated sunflower (Helianthus annuus L.) by landed BAC/BIBAC clones.

    Feng, Jiuhuan; Liu, Zhao; Cai, Xiwen; Jan, Chao-Chien


    Conventional karyotypes and various genetic linkage maps have been established in sunflower (Helianthus annuus L., 2n = 34). However, the relationship between linkage groups and individual chromosomes of sunflower remains unknown and has considerable relevance for the sunflower research community. Recently, a set of linkage group-specific bacterial /binary bacterial artificial chromosome (BAC/BIBAC) clones was identified from two complementary BAC and BIBAC libraries constructed for cultivated sunflower cv. HA89. In the present study, we used these linkage group-specific clones (~100 kb in size) as probes to in situ hybridize to HA89 mitotic chromosomes at metaphase using the BAC-fluorescence in situ hybridization (FISH) technique. Because a characteristic of the sunflower genome is the abundance of repetitive DNA sequences, a high ratio of blocking DNA to probe DNA was applied to hybridization reactions to minimize the background noise. As a result, all sunflower chromosomes were anchored by one or two BAC/BIBAC clones with specific FISH signals. FISH analysis based on tandem repetitive sequences, such as rRNA genes, has been previously reported; however, the BAC-FISH technique developed here using restriction fragment length polymorphism (RFLP)-derived BAC/BIBAC clones as probes to apply genome-wide analysis is new for sunflower. As chromosome-specific cytogenetic markers, the selected BAC/BIBAC clones that encompass the 17 linkage groups provide a valuable tool for identifying sunflower cytogenetic stocks (such as trisomics) and tracking alien chromosomes in interspecific crosses. This work also demonstrates the potential of using a large-insert DNA library for the development of molecular cytogenetic resources.

  4. Specific Changes of Exocarp and Mesocarp Occurring during Softening Differently Affect Firmness in Melting (MF) and Non Melting Flesh (NMF) Fruits

    Onelli, E.; Ghiani, A.; Gentili, R; S Serra; Musacchi, S.; Citterio, S.


    Melting (MF) and non melting flesh (NMF) peaches differ in their final texture and firmness. Their specific characteristics are achieved by softening process and directly dictate fruit shelf life and quality. Softening is influenced by various mechanisms including cell wall reorganization and water loss. In this work, the biomechanical properties of MF Spring Crest's and NMF Oro A's exocarp and mesocarp along with the amount and localization of hydroxycinnamic acids and flavonoids were invest...

  5. 23 CFR Appendix A to Part 1225 - Effects of the 0.08 BAC Sanction Program on Non-Complying States


    ... 23 Highways 1 2010-04-01 2010-04-01 false Effects of the 0.08 BAC Sanction Program on Non... INTOXICATED PERSONS Pt. 1225, App. A Appendix A to Part 1225—Effects of the 0.08 BAC Sanction Program on Non-Complying States Effects of the 0.08 BAC Sanction Program on Non-Complying States Fiscalyear Withhold...

  6. Genetic analysis of the Rhizobium meliloti bacA gene: functional interchangeability with the Escherichia coli sbmA gene and phenotypes of mutants.

    Ichige, A; Walker, G C


    The Rhizobium meliloti bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homolog of BacA, SbmA, is implicated in the uptake of microcin B17, microcin J25 (formerly microcin 25), and bleomycin. When expressed in E. coli with the lacZ promoter, the R. meliloti bacA gene was found to suppress all the known defects of E. coli sbmA mutants, namely, increased resistance to microcin B17, microcin J25, and bleomycin, demonstrating the functional similarity between the two proteins. The R. meliloti bacA386::Tn(pho)A mutant, as well as a newly constructed bacA deletion mutant, was found to show increased resistance to bleomycin. However, it also showed increased resistance to certain aminoglycosides and increased sensitivity to ethanol and detergents, suggesting that the loss of bacA function causes some defect in membrane integrity. The E. coli sbmA gene suppressed all these bacA mutant phenotypes as well as the Fix- phenotype when placed under control of the bacA promoter. Taken together, these results strongly suggest that the BacA and SbmA proteins are functionally similar and thus provide support for our previous hypothesis that BacA may be required for uptake of some compound that plays an important role in bacteroid development. However, the additional phenotypes of bacA mutants identified in this study suggest the alternative possibility that BacA may be needed for membrane integrity, which is likely to be critically important during the early stages of bacterial differentiation within plant cells.

  7. BacT/ALERT 3 D系统在结核性脑膜炎诊断中的应用%Value of BacT/ALERT 3 D microbial detection system in rapid diagnosis of tuberculosis men-ingitis

    张继萍; 任丽娟; 李永利; 叶迎宾; 黄秀香; 郑立恒


    目的:评价BacT/ALERT 3D系统在诊断结核性脑膜炎中的应用价值。方法:收集2009年1月~2014年6月间200例结核性脑膜炎患者早期脑脊液标本480份,每份标本分别用离心涂片法、罗氏培养法和BacT/ALERT 3D系统培养法检测,对其结果进行分析,总结3种方法对确诊结核性脑膜炎之间的差异。结果:480份脑脊液标本中,离心涂片法、罗氏培养法、BacT/ALERT 3D系统培养法的结核杆菌阳性检出率分别为3.13%、5.42%、10.63%,BacT/ALERT 3D系统培养法结核杆菌初代分离时间短于罗氏培养法。结论:BacT/ALERT 3D系统有较高的检出率、较快的检出时间,有助于提高结核性脑膜炎的发现率,值得临床推广应用。%Objective:To evaluate the application value of BacT/ALERT 3D microbial detection system in rapid diagnosis of tuberculosis meningitis . Methods:480 specimens in cerebrospinsl fluid ( CSF) of 200 patients diagnosed with tuberculosis meningitis were collected from January 2009 to June 2014.These specimens were processed for detection of the mycobacterium tuberculosis by centrifugal smear acid-fast stain ( Ziehl-Neelsen staining) and Lowenstein-Jensen cultivation,as well as the BacT/ALERT 3D system.The above results were analyzed and compared regarding the positive rates in order to evaluate the value in diagnosing tuberculosis meningitis .Results:The positive rates of the centrifugal smear acid-fast smear,Lowenstein-Jensen cultiva-tion and BacT/ALERT 3D system cultivation were 3.13%,5.42% and 10.63% respectively.Conclusion: BacT/Alert 3D microbial detection system may lead to higher sensitivity and shortened detection time ,which is worthy of wider clinical recommendation .

  8. Comparison of DNA Extraction Methods for Microbial Community Analysis in Indonesian Tempe Employing Amplified Ribosomal Intergenic Spacer Analysis



    Full Text Available Tempe fermentation involved complex microbial communities which are only revealed partially through culture dependent methods. Culture-independent methods would be potential to unravel this complex microbial fermentation. Appropriate DNA extraction is an essential tool to obtain reliable data from culture independent method. In this study, we employed two commercial DNA extraction methods to find the best one for microbial community characterization employing amplified ribosomal intergenic spacer analysis (ARISA. Our result showed that PowerFood Microbial DNA Isolation Kit-MOBIO (PFMDIK is an excellent method for microbial DNA extraction from tempe. It gave high quantity and quality of DNA suitable for PCR amplification of 16S-23S rRNA intergenic spacer to yield a diverse and reproducible ARISA profile.

  9. Temporalitats digitals. Aproximació a una teoria del temps cinemàtic en les obres audiovisuals interactives

    Sora Domenjó, Carles


    Aquesta tesi presenta una aproximació teòrica a l'estudi del temps cinemàtic en l'audiovisual interactiu, des de dues perspectives: la de l'estructuració narrativa, els seus usos i tractament temporal; i la de la seva vivència i percepció. L'avenç constant de les tecnologies de la informació i les comunicacions ha fet variar la manera com hem concebut i hem fet ús del temps, a través de les imatges en moviment al llarg de la història. En els mitjans digitals es generen ara múltiples noves con...

  10. Vie tribologique à chaud et température interfaciale dans des contacts céramiques

    Dalverny, Olivier


    Le frottement et l'usure de différents couples de céramiques oxydes (alumines) et non-oxyde (carbure de tungstène à liant cobalt) ont été étudiés à température ambiante et à haute température en s'attachant à mettre en relief l'incidence des phénomènes thermiques sur le comportement tribologique de ces matériaux. Un montage expérimental a tout d'abord été conçu et réalisé spécialement pour cette étude. Il permet la conduite d'essais de frottement en configuration pion-disque de l'ambiante à 9...

  11. Expression of SETD4 in Bac-to-Bac baculovirus expression system%SETD4蛋白在Bac-to-Bac杆状病毒系统的表达

    雷烨铭; 崔航; 钟玙沄; 王义乾; 黄穗; 赵舒祺; 蔡军伟; 姜勇; 刘靖华


    目的:通过昆虫杆状病毒表达系统表达SETD4(SET domain-containing 4)蛋白,并纯化SETD4蛋白,为深入探讨SETD4的功能奠定基础。方法提取小鼠正常肝组织的RNA,通过RT-PCR扩增SETD4基因,并克隆至pFastBac-HTB构建重组载体,再转座获得重组杆粒;通过脂质体介导将重组杆粒转染SF9细胞产生重组病毒,扩增病毒感染细胞并获得重组蛋白;利用Ni2+亲和柱来纯化蛋白,并通过Western Blot及考马斯亮蓝染色鉴定SETD4蛋白。结果经双酶切鉴定及测序证实SETD4基因插入了供体质粒;经PCR鉴定证实SETD4基因插入了穿梭载体;经考马斯亮蓝染色证实纯化得到重组蛋白,用His-Tag抗体和SETD4特异性抗体在50 kD处可检测到目的条带。结论成功利用昆虫杆状病毒表达系统够表达了SETD4,并纯化了SETD4。%Objective To express SET domain- containing 4 (SETD4) protein through using baculovirus expression system and purify the expressed product to explore the functions of SETD4 protein and further understand the biological roles of SET family proteins. Methods The SETD4 gene was amplified by RT-PCR from mouse normal liver tissue. The gene was then inserted into pFastBac-HTB vector to form the recombinant donor plasmid which was further transformed into DH10Bac to construct the recombined bacmid. Next the bacmid was transfected to sf9 cells for package of the recombinant baculovirus particles. The recombinant SETD4 protein was expressed from the cells transduced by the recombinant baculovirus and was purified by NI-NTA resin. Purified protein was examined by coomassie brilliant blue staining and Western Blotting. Results The donor plasmid and recombined bacmid were successfully prepared and the recombinant baculovirus particles were produced from sf9 cells. The SETD4 protein was obtained and confirmed by brilliant blue staining and western blotting with a His-tag antibody and a specific SETD4 antibody

  12. Optimum condition of Bac-J23 production from Lactobacillus J23%Lactobacillus J23发酵合成抗茵肽Bac-J23培养条件的优化研究

    易华西; 韩雪; 杜明; 张兰威


    pH, temperature and inoculation size dependent property were observed when Lactobacillus paracasei-J23 produced Bac-J23. The optimum condition to Bac-J23 synthesize were 36.8 ℃, pHS.2 and 2.13×10^4 cfu/mL inoculum size. Under the optimum condition, the production of Bac-J23 was improved 1.68 folds and reached 5400 U/mL.%研究了培养条件(接种量、发酵温度、初始pH)对Lactobacillus J23发酵合成广谱抗茵肽Bac-J23的影响,并采用响应面法进行了优化。结果表明,Lactobacillus-J23生产Bac-J23体现出温度、pH梯度和接种剂量依赖性,响应面优化结果表明最适温度和pH分别为36.8℃和5.2,接种量阈值为2.13×10^4cfu/mL。


    Tri Widyastuti


    Full Text Available Customer satisfaction is the level of customer ratings of products or services. Manufacturers and traders need to consider the level of customer satisfaction by improving product quality, service quality, price and customer emotional level, as well as production costs. Customer satisfaction measurement provides information for producers, traders and consumers of the products or services produced. This study uses descriptive quantitative method, distributing randomly questionaire to the “Tempe” customers at Pasar Lembang, Kota Tangerang. The evidence from the results obtained from the calculation showed that there is a significant influence partially and simultaneously of price and product quality to customer satisfaction of tempe at Lembang Traditional Market, Kota Tangerang. It can be concluded that the traders and producers should maintain and improve the quality of their products and give the compatible price of the products ‘Tempe” in accordance with their qualities in order to increase the purchasing power and consumer loyalty in consuming the product. Keywords: Pricing, Product Quality, Customer Satisfaction.

  14. Trous noirs et distorsions du temps l'héritage sulfureux d'Einstein

    Thorne, Kip S


    Kip S. Thorne a été l'un des acteurs privilégiés d'une quête grandiose, qui a duré près de trente années, pour comprendre l'héritage transmis par Einstein - la théorie de la relativité générale et ses étonnantes prédictions concernant l'univers -, pour découvrir où et comment la relativité échoue, et pour trouver ce qui alors la remplace. Le lecteur est entraîné à travers un labyrinthe d'objets exotiques: trous noirs, naines blanches, étoiles à neutrons, ondes gravitationnelles, trous de ver et machines à voyager dans le temps. Il suit pas à pas l'histoire de ces découvertes scientifiques qui ont toutes été prédites par la théorie de la relativité et à certaines desquelles Einstein lui-même ne croyait pas. L'auteur écrit ainsi la chronique fascinante des efforts qui menèrent à la compréhension des objets peut-être les plus mystérieux de l'univers, en particulier les trous noirs. Jonglant avec les décennies, évoquant la multiplicité des collaborations scientifiques à...

  15. Literature in focus: Explorer l'espace pour remonter le temps


    Would Prof Bignami like to dance on Saturn's rings? Why not ask him? Astrophysicist, Director of the Centre d'étude spatiale des rayonnements de Toulouse, President of the Scientific Committee of the European Space Agency and member of the Accademia dei Lincei, Giovanni Bignami returns to CERN to present his new book published last month. Exploring space to rewind time: the book tells the history of the people and the organisations which have led our exploration of space, from Giotto to the present day. At CERN we might go no further than our labs to rewind time, but for astrophysicists the search for an understanding of the Universe takes a journey of a much greater distance. Who better than Prof Bignami to tell us about this extraordinary adventure? Join the library staff for an intimate discussion with Prof Bignami about the experiences and interests that led him to write this book. Giovanni Bignami 'Explorer l'espace pour remonter le temps' Monday 20 February at 4 p.m. Central Library reading room ...

  16. Les secrets de l'efficacité en faire plus... en moins de temps

    Savoyat, Bruno


    Comment gagner en efficacité grâce à une meilleure organisation et à une utilisation plus performante de l'informatique. Ce livre, rédigé par un spécialiste internationalement reconnu des méthodes d'optimisation du travail, vous fournit £ une méthode de hiérarchisation des tâches et 0 les règles qui vous permettront d'acquérir une meilleure organisation personnelle et collective. Il montre également % comment utiliser au mieux les outils informatiques (Internet, Intranet, groupware) pour parvenir à gagner en efficacité au bureau. Parce que les techniques qu'il propose ont été appliquées avec succès par plus d'1 million de personnes dans le monde, ce livre vous aidera vraiment. Grâce à ce livre vous apprendrez à : ° Mieux gérer votre emploi du temps en fonction de vos priorités, de vos responsabilités et de vos objectifs en établissant votre «carte de responsabilités» et en apprenant à déléguer. ° Mieux organiser le rangement des documents sur votre bureau, dans votre messag...

  17. Dis(apparitions : Le Temps retrouvé, de Proust à Ruiz

    Amandine Cyprès


    Full Text Available Dans son adaptation du Temps retrouvé, le réalisateur chilien Raoul Ruiz parvient à rendre l’essentiel du livre de Proust ; il évite l’écueil de la transposition purement diégétique et concilie ses propres recherches cinématographiques avec les particularités de la narration proustienne. Cela se traduit notamment par divers jeux sur la présence et l’absence du narrateur à l’écran et par la destitution progressive des personnages au profit d’apparitions, objets ou visions oniriques.En su adaptación cinematográfica de El tiempo recobrado, el cineasta chileno Raúl Ruíz logra poner en relieve el tema central de la obra de Proust, evitando el escollo de una transposición exclusivamente diegética y conciliando sus propias investigaciones cinematográficas con los particularismos de la narración proustiana. Ello se manifiesta sobre todo a través de diferentes juegos relacionados con la presencia y ausencia del narrador en la pantalla, y a través de la desaparición progresiva de los personajes en beneficio de apariciones, de objetos o visiones oníricas.

  18. The influence of biofilm formation on electricity production from tempe wastewater using tubular membraneless microbial fuel cell reactor

    Siagian, Nathania Dwi Karina; Arbianti, Rita; Utami, Tania Surya


    Microbial fuel cell (MFC) technology can be potentially developed as an alternative energy source since it can convert various substrates from renewable sources into electricity using bacteria as biocatalyst. Tempe wastewater as MFC substrate gives advantages in tempe wastewater treatment and reducing the purchasing cost of bacteria. Currently, the applications of MFCs are still limited due to the relatively low electricity production, so many studies have been conducted to improve the electricity production by MFC. This study focused on investigating the influence of biofilm formation time and the use of macromolecule as additional substrate towards electricity production from MFC system with tubular membranless reactor and tempe wastewater as substrate. This study suggested that biofilm formation on anode could improve the electricity production up to 10-folds while the use of glucose as substrate addition reduce the electricity production up to 60%. The biggest electricity output was obtained from the experiment of biofilm formation for 14 days with EPS content in biofilm 0,13 mg/cm2 where the maximum voltage and power density produced was respectively 34,81 mV and 0,26 mW/m2.

  19. STATIC{sub T}EMP: a useful computer code for calculating static formation temperatures in geothermal wells

    Santoyo, E. [Universidad Nacional Autonoma de Mexico, Centro de Investigacion en Energia, Temixco (Mexico); Garcia, A.; Santoyo, S. [Unidad Geotermia, Inst. de Investigaciones Electricas, Temixco (Mexico); Espinosa, G. [Universidad Autonoma Metropolitana, Co. Vicentina (Mexico); Hernandez, I. [ITESM, Centro de Sistemas de Manufactura, Monterrey (Mexico)


    The development and application of the computer code STATIC{sub T}EMP, a useful tool for calculating static formation temperatures from actual bottomhole temperature data logged in geothermal wells is described. STATIC{sub T}EMP is based on five analytical methods which are the most frequently used in the geothermal industry. Conductive and convective heat flow models (radial, spherical/radial and cylindrical/radial) were selected. The computer code is a useful tool that can be reliably used in situ to determine static formation temperatures before or during the completion stages of geothermal wells (drilling and cementing). Shut-in time and bottomhole temperature measurements logged during well completion activities are required as input data. Output results can include up to seven computations of the static formation temperature by each wellbore temperature data set analysed. STATIC{sub T}EMP was written in Fortran-77 Microsoft language for MS-DOS environment using structured programming techniques. It runs on most IBM compatible personal computers. The source code and its computational architecture as well as the input and output files are described in detail. Validation and application examples on the use of this computer code with wellbore temperature data (obtained from specialised literature) and with actual bottomhole temperature data (taken from completion operations of some geothermal wells) are also presented. (Author)

  20. Global financial crisis and weak-form efficiency of Islamic sectoral stock markets: An MF-DFA analysis

    Mensi, Walid; Tiwari, Aviral Kumar; Yoon, Seong-Min


    This paper estimates the weak-form efficiency of Islamic stock markets using 10 sectoral stock indices (basic materials, consumer services, consumer goods, energy, financials, health care, industrials, technology, telecommunication, and utilities). The results based on the multifractal detrended fluctuation analysis (MF-DFA) approach show time-varying efficiency for the sectoral stock markets. Moreover, we find that they tend to show high efficiency in the long term but moderate efficiency in the short term, and that these markets become less efficient after the onset of the global financial crisis. These results have several significant implications in terms of asset allocation for investors dealing with Islamic markets.

  1. Application of MF,Ozone and RO in Treatment of Municipal Sewage Reused as Circulating Cooling Water

    Zhang Liqiang


    @@ Reuse of treated municipal sewage as circulating cooling water of fossil-fired power plants is a very theme worthy to be studied and spread because of the water shortage in most areas of China. This paper presents a process using coagulation + MF + ozone + partial RO to deal with the recycled sewage after treated preliminarily in sewage treatment plant. The process solves effectively the problem of higher TDS and higher total hardness in product water in winter, thus is especially fit for cities where sewage quality changes obviously with seasons.

  2. Transcriptional regulation of mouse alpha A-crystallin gene in a 148kb Cryaa BAC and its derivates

    Yang Ying


    Full Text Available Abstract Background αA-crystallin is highly expressed in the embryonic, neonatal and adult mouse lens. Previously, we identified two novel distal control regions, DCR1 and DCR3. DCR1 was required for transgenic expression of enhanced green fluorescent protein, EGFP, in lens epithelium, whereas DCR3 was active during "late" stages of lens primary fiber cell differentiation. However, the onset of transgenic EGFP expression was delayed by 12–24 hours, compared to the expression of the endogenous Cryaa gene. Results Here, we used bacterial artificial chromosome (BAC and standard transgenic approaches to examine temporal and spatial regulation of the mouse Cryaa gene. Two BAC transgenes, with EGFP insertions into the third coding exon of Cryaa gene, were created: the intact αA-crystallin 148 kb BAC (αA-BAC and αA-BAC(ΔDCR3, which lacks approximately 1.0 kb of genomic DNA including DCR3. Expression of EGFP in the majority of both BAC transgenics nearly recapitulated the endogenous expression pattern of the Cryaa gene in lens, but not outside of the lens. The number of cells expressing αA-crystallin in the lens pit was higher compared to the number of cells expressing EGFP. Next, we generated additional lines using a 15 kb fragment of αA-crystallin locus derived from αA-BAC(ΔDCR3, 15 kb Cryaa/EGFP. A 15 kb region of Cryaa/EGFP supported the expression pattern of EGFP also in the lens pit. However, co-localization studies of αA-crystallin and EGFP indicated that the number of cells that showed transgenic expression was higher compared to cells expressing αA-crystallin in the lens pit. Conclusion We conclude that a 148 kb αA-BAC likely contains all of the regulatory regions required for αA-crystallin expression in the lens, but not in retina, spleen and thymus. In addition, while the 15 kb Cryaa/EGFP region also supported the expression of EGFP in the lens pit, expression in regions such as the hindbrain, indicate that additional genomic

  3. The first generation of a BAC-based physical map of Brassica rapa

    Lee Soo


    Full Text Available Abstract Background The genus Brassica includes the most extensively cultivated vegetable crops worldwide. Investigation of the Brassica genome presents excellent challenges to study plant genome evolution and divergence of gene function associated with polyploidy and genome hybridization. A physical map of the B. rapa genome is a fundamental tool for analysis of Brassica "A" genome structure. Integration of a physical map with an existing genetic map by linking genetic markers and BAC clones in the sequencing pipeline provides a crucial resource for the ongoing genome sequencing effort and assembly of whole genome sequences. Results A genome-wide physical map of the B. rapa genome was constructed by the capillary electrophoresis-based fingerprinting of 67,468 Bacterial Artificial Chromosome (BAC clones using the five restriction enzyme SNaPshot technique. The clones were assembled into contigs by means of FPC v8.5.3. After contig validation and manual editing, the resulting contig assembly consists of 1,428 contigs and is estimated to span 717 Mb in physical length. This map provides 242 anchored contigs on 10 linkage groups to be served as seed points from which to continue bidirectional chromosome extension for genome sequencing. Conclusion The map reported here is the first physical map for Brassica "A" genome based on the High Information Content Fingerprinting (HICF technique. This physical map will serve as a fundamental genomic resource for accelerating genome sequencing, assembly of BAC sequences, and comparative genomics between Brassica genomes. The current build of the B. rapa physical map is available at the B. rapa Genome Project website for the user community.

  4. Size matters: use of YACs, BACs and PACs in transgenic animals.

    Giraldo, P; Montoliu, L


    In 1993, several groups, working independently, reported the successful generation of transgenic mice with yeast artificial chromosomes (YACs) using standard techniques. The transfer of these large fragments of cloned genomic DNA correlated with optimal expression levels of the transgenes, irrespective of their location in the host genome. Thereafter, other groups confirmed the advantages of YAC transgenesis and position-independent and copy number-dependent transgene expression were demonstrated in most cases. The transfer of YACs to the germ line of mice has become popular in many transgenic facilities to guarantee faithful expression of transgenes. This technique was rapidly exported to livestock and soon transgenic rabbits, pigs and other mammals were produced with YACs. Transgenic animals were also produced with bacterial or P1-derived artificial chromosomes (BACs/PACs) with similar success. The use of YACs, BACs and PACs in transgenesis has allowed the discovery of new genes by complementation of mutations, the identification of key regulatory sequences within genomic loci that are crucial for the proper expression of genes and the design of improved animal models of human genetic diseases. Transgenesis with artificial chromosomes has proven useful in a variety of biological, medical and biotechnological applications and is considered a major breakthrough in the generation of transgenic animals. In this report, we will review the recent history of YAC/BAC/PAC-transgenic animals indicating their benefits and the potential problems associated with them. In this new era of genomics, the generation and analysis of transgenic animals carrying artificial chromosome-type transgenes will be fundamental to functionally identify and understand the role of new genes, included within large pieces of genomes, by direct complementation of mutations or by observation of their phenotypic consequences.

  5. Detection of single copy sequences using BAC-FISH and C-PRINS techniques in sunflower chromosomes.

    Talia, Paola; Greizerstein, Eduardo J; Hopp, H Esteban; Paniego, Norma; Poggio, Lidia; Heinz, Ruth A


    Bacterial artificial chromosome-fluorescence in situ hybridization (BAC-FISH) and cycling-primed in situ labeling (C-PRINS) techniques were evaluated for integration of physical and genetic maps of sunflower (Helianthus annuus L.). Single-site SSR markers were selected from three linkage groups of a high-density sunflower genetic map. This selection was based on previously identified QTL associated to S. sclerotiorum. These markers were used to select BACs contaning single copy sequences for BAC-FISH aplication. Blocking of highly dispersed repetitive sunflower sequences reduced unspecific hybridization, and allowed the detection of specific signals for BACs containing SSR markers HA4222 and HA2600, anchored to LG 16 and LG 10, respectively. Single-site FISH signal detection was optimized by adjusting the relative quantity and quality of unlabelled repetitive sequences present in the blocking DNA. The SSR marker ORS1247 anchored to the LG 17 was detected by C-PRINS, which yielded fluorescence signals that were specific and intense. This progress in localizing single-copy sequences using BAC-FISH and indirect C-PRINS strategies in sunflower will facilitate the integration of genetic and physical maps, allowing the identification of chromosomes containing key genes and/or QTL associated to agronomic important traits in sunflower.

  6. Highly efficient modification of bacterial artificial chromosomes (BACs) using novel shuttle vectors containing the R6Kgamma origin of replication.

    Gong, Shiaoching; Yang, Xiangdong William; Li, Chenjian; Heintz, Nathaniel


    Bacterial artificial chromosome (BAC) mediated transgenesis has proven to be a highly reliable way to obtain accurate transgene expression for in vivo studies of gene expression and function. A rate-limiting step in use of this technology to characterize large numbers of genes has been the process with which BACs can be modified by homologous recombination in Escherichia coli. We report here a highly efficient method for modifying BACs by using a novel set of shuttle vectors that contain the R6Kgamma origin for DNA replication, the E. coli RecA gene for recombination, and the SacB gene for negative selection. These new vectors greatly increased the ease with which one can clone the shuttle vectors, as well as screen for co-integrated and resolved clones. Furthermore, we simplify the shuttle vector cloning to one step by incorporation of a "built-in" resolution cassette for rapid removal of the unwanted vector sequences. This new system has been used to modify a dozen BACs. It is well suited for efficient production of modified BACs for use in a variety of in vivo studies.

  7. Physical location of rice Gm-6,Pi-5(t) genes in O. officinalis with BAC-FISH


    A fluorescence in situ hybridization (FISH) procedure was adoptedto physically map two rice BAC clones 24E21 and 4F22 linked to Gm-6 and Pi-5(t) in O. officinalis. FISH results showed that the two BAC clones were located at 4L. The percentage distance from the centromere to the hybridization sites was 72±2.62 for 24E21 and 54±5.43 for 4F22, the detection rates were 52.70% and 61.2%. The results obtained from the BAC and plasmid clones, RG214 and RZ565 of cultivated rice and O. officinalis were the same. This suggested that the markers, RG214 and RZ565 of cultivated rice and O. officinalis were in the same BAC clones. The homologous sequences of Gm-6 and Pi-5(t) in O. officinalis were positions that signals existed on the 4L. Many signals were observed when no Cot-1 DNA blocked. This also showed that repetitive sequences were some homolgous between cultivated rice and O. officinalis. The identification of chromosome 4 of O. officinalis is based on Jena et al. (1994). In our study, we discussed the possibility of physical map in O. officinalis with rice BAC clones.

  8. Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness

    Shaw Kerry L


    Full Text Available Abstract Background Simple sequence repeats (SSRs are tandemly repeated sequence motifs common in genomic nucleotide sequence that often harbor significant variation in repeat number. Frequently used as molecular markers, SSRs are increasingly identified via in silico approaches. Two common classes of genomic resources that can be mined are bacterial artificial chromosome (BAC libraries and expressed sequence tag (EST libraries. Results 288 SSR loci were screened in the rapidly radiating Hawaiian swordtail cricket genus Laupala. SSRs were more densely distributed and contained longer repeat structures in BAC library-derived sequence than in EST library-derived sequence, although neither repeat density nor length was exceptionally elevated despite the relatively large genome size of Laupala. A non-random distribution favoring AT-rich SSRs was observed. Allelic diversity of SSRs was positively correlated with repeat length and was generally higher in AT-rich repeat motifs. Conclusion The first large-scale survey of Orthopteran SSR allelic diversity is presented. Selection contributes more strongly to the size and density distributions of SSR loci derived from EST library sequence than from BAC library sequence, although all SSRs likely are subject to similar physical and structural constraints, such as slippage of DNA replication machinery, that may generate increased allelic diversity in AT-rich sequence motifs. Although in silico approaches work well for SSR locus identification in both EST and BAC libraries, BAC library sequence and AT-rich repeat motifs are generally superior SSR development resources for most applications.

  9. The Bac(chus experiment: blood alcohol concentrations after wine tasting

    Albert van de Wiel


    Full Text Available Blood alcohol concentrations (BACs were measured in ten volunteers after a wine tasting event with and without the swallowing of 15 mL of each wine. In case ten wines were tasted within one hour without swallowing, buccal mucosa absorption did not result in problematic BAC’s; however in case 15 mL of each wine was swallowed, BAC’s may exceed the legal driving limit of most countries. It is recommended to eat beforehand, but also to wait at least one hour after the session before driving back home.

  10. Reframing Nationality through Local and Regional Social Practices – Europe Direct Bacău Relay

    Camelia Cmeciu


    Full Text Available Paraphrasing the famous European syntagm “unity in diversity”, we will introduce anothersyntagm, namely “nationality in diversity”, thus laying an emphasis on the strategies (social practicesadopted by each of the thirty one Europe Direct relays in Romania in order to achieve their goals.Having as theoretical background the four semiotic systems (represented participants, interactiveparticipants, composition, modality of social semiotics (van Leeuwen, Kress, 2001, 2005, we willinterpret the 2009 campaign promoted by Europe Direct Bacău as an alternative interweaving ofcognitive, affective and behavioural effects.

  11. Expression of Human CAR Splicing Variants in BAC-Transgenic Mice

    Zhang, Yu-Kun Jennifer; Lu, Hong; Klaassen, Curtis D.


    The nuclear receptor constitutive androstane receptor (CAR) is a key regulator for drug metabolism in liver. Human CAR (hCAR) transcripts are subjected to alternative splicing. Some hCAR splicing variants (SVs) have been shown to encode functional proteins by reporter assays. However, in vivo research on the activity of these hCAR SVs has been impeded by the absence of a valid model. This study engineered an hCAR-BAC-transgenic (hCAR-TG) mouse model by integrating the 8.5-kbp hCAR gene as wel...

  12. Desarrollo de un modelo de evaluación financiera de proyectos para BAC Credomatic Network

    Sandí Piedra, Allan Adolfo


    Universidad de Costa Rica. Posgrado en Administración y Dirección de Empresas. Maestría Profesional en Administración y Dirección de Empresas con énfasis en Finanzas, 2016 El presente trabajo final de investigación contiene los aspectos que fundamentan un modelo de Evaluación Financiera de Proyectos que permite solventar la problemática identificada en BAC Credomatic Network respecto al limitado valor agregado del proceso existente de valoración financiera de los proyectos de la empresa. P...

  13. Implementation of BacMam virus gene delivery technology in a drug discovery setting.

    Kost, Thomas A; Condreay, J Patrick; Ames, Robert S; Rees, Stephen; Romanos, Michael A


    Membrane protein targets constitute a key segment of drug discovery portfolios and significant effort has gone into increasing the speed and efficiency of pursuing these targets. However, issues still exist in routine gene expression and stable cell-based assay development for membrane proteins, which are often multimeric or toxic to host cells. To enhance cell-based assay capabilities, modified baculovirus (BacMam virus) gene delivery technology has been successfully applied to the transient expression of target proteins in mammalian cells. Here, we review the development, full implementation and benefits of this platform-based gene expression technology in support of SAR and HTS assays across GlaxoSmithKline.

  14. Drink-driving convictions and the effect of lowering the BAC levels

    Christoffersen, Mogens

    .g. disadvantages during adolescence, severe psychological problems, prior criminal history, living in rural vs. metropolitan area, and their present social position, e.g. educational background). In order to evaluate the effect of changed legislation on the incidence of first-time drink-driving convictions among...... by increase in resilience factors such as education and employment factors. Lowering the BAC-limits seems not to be an effective measure to reduce DWI-convictions but DWI-behaviour must have changed according to the new BAClimits....

  15. BACS: The Brussels Artificial Character Sets for studies in cognitive psychology and neuroscience.

    Vidal, Camille; Content, Alain; Chetail, Fabienne


    Written symbols such as letters have been used extensively in cognitive psychology, whether to understand their contributions to written word recognition or to examine the processes involved in other mental functions. Sometimes, however, researchers want to manipulate letters while removing their associated characteristics. A powerful solution to do so is to use new characters, devised to be highly similar to letters, but without the associated sound or name. Given the growing use of artificial characters in experimental paradigms, the aim of the present study was to make available the Brussels Artificial Character Sets (BACS): two full, strictly controlled, and portable sets of artificial characters for a broad range of experimental situations.

  16. Germline transformation of Aedes fluviatilis (Diptera:Culicidae) with the piggyBac transposable element.

    Rodrigues, Flávia Guimarães; Oliveira, Sabrina Barbosa; Rocha, Bruno Coelho; Moreira, Luciano Andrade


    The technique to generate transgenic mosquitoes requires adaptation for each target species because of aspects related to species biology, sensitivity to manipulation and rearing conditions. Here we tested different parameters on the microinjection procedure in order to obtain a transgenic Neotropical mosquito species. By using a transposon-based strategy we were able to successfully transform Aedes fluviatilis (Lutz), which can be used as an avian malaria model. These results demonstrate the usefulness of the piggyBac transposable element as a transformation vector for Neotropical mosquito species and opens up new research frontiers for South American mosquito vectors.

  17. Germline transformation of Aedes fluviatilis (Diptera:Culicidae with the piggyBac transposable element

    Flávia Guimarães Rodrigues


    Full Text Available The technique to generate transgenic mosquitoes requires adaptation for each target species because of aspects related to species biology, sensitivity to manipulation and rearing conditions. Here we tested different parameters on the microinjection procedure in order to obtain a transgenic Neotropical mosquito species. By using a transposon-based strategy we were able to successfully transform Aedes fluviatilis (Lutz, which can be used as an avian malaria model. These results demonstrate the usefulness of the piggyBac transposable element as a transformation vector for Neotropical mosquito species and opens up new research frontiers for South American mosquito vectors.

  18. Prenatal diagnosis of Langer-Giedion Syndrome confirmed by BACs-on-Beads technique.

    Piotrowski, Krzysztof; Halec, Wojciech; Wegrzynowski, Jerzy; Pietrzyk, Aleksandra; Henkelman, Małgorzata; Zajaczek, Stanisław


    Langer-Giedion Syndrome (LGS), with characteristic phenotypic features including craniofacial dysmorphic signs, postnatal growth retardation and skeletal abnormalities, mental impairment, urogenital malformations and heart defects, is caused by partial deletions of the long arm of chromosome 8. We present a case of a female fetus with LGS. The diagnosis was molecularly proven with the BACs on Beads method at 32 weeks of gestation. To the best of our knowledge, prenatal recognition of that genetic defect had previously been made in only one case. Also, it has never been described before.

  19. Hyperactive piggyBac Gene Transfer in Human Cells and In Vivo

    Doherty, Joseph E.; Huye, Leslie E; Yusa, Kosuke; Zhou, Liqin; Craig, Nancy L; Wilson, Matthew H.


    We characterized a recently developed hyperactive piggyBac (pB) transposase enzyme [containing seven mutations (7pB)] for gene transfer in human cells in vitro and to somatic cells in mice in vivo. Despite a protein level expression similar to that of native pB, 7pB significantly increased the gene transfer efficiency of a neomycin resistance cassette transposon in both HEK293 and HeLa cultured human cells. Native pB and SB100X, the most active transposase of the Sleeping Beauty transposon sy...

  20. Reprogramming of mouse amniotic fluid cells using a PiggyBac transposon system

    E. Bertin


    Full Text Available Induced pluripotent stem (iPS cells are generated from mouse and human somatic cells by forced expression of defined transcription factors using different methods. Amniotic fluid (AF cells are easy to obtain from routinely scheduled procedures for prenatal diagnosis and iPS cells have been generated from human AF. Here, we generated iPS cells from mouse AF cells, using a non-viral-based approach constituted by the PiggyBac (PB transposon system. All iPS cell lines obtained exhibited characteristics of pluripotent cells, including the ability to differentiate toward derivatives of all three germ layers in vitro and in vivo.

  1. Surface characteristics and degradational history of debris aprons in the Tempe Terra/Mareotis fossae region of Mars

    Chuang, Frank C.; Crown, David A.


    We have documented the surface characteristics and degradational history of a population of 65 lobate debris aprons in the Tempe Terra/Mareotis fossae region of Mars. These aprons were compared to other martian debris aprons to evaluate similarities and differences among different populations, which can provide insight into the dominant controls on apron development. Tempe/Mareotis debris aprons, found at the bases of isolated or clustered massifs, escarpments, and crater interior walls, were studied using Viking Orbiter, Mars Global Surveyor, and Mars Odyssey datasets in a GIS database. Six textures related to degradation of apron surfaces are identified in MOC images, and they are divided into two groups: an upper-surface group and a lower-surface group. Degradation occurs within an inferred smooth, upper surface mantle of ice and debris, producing a sequence of pitted, ridge and valley, and knobby textures of the upper-surface group. Where upper-surface materials have been removed, smooth and ridged textures of the lower-surface group are exposed. Degradation to various depths may expose lower-surface materials, which may consist of the main apron mass, remnants of mantling deposits, or both. A combination of geologic processes may have caused the degradation, including ice sublimation, ice melt, and eolian activity. Apron surfaces have lower maximum thermal inertias and mean surface temperatures than adjacent plains surfaces, which may be explained by the trapping of unconsolidated materials in low-lying pits and valleys formed by surface degradation or from the disruption of crusts on degraded portions of apron surfaces. One feature observed only on Tempe/Mareotis debris aprons are broad ridges, which mimic the shape of massif bases for tens of kilometers. We propose these to be constructional features that could have formed during cycles of increased debris production. Apron morphometric parameters including area, volume, slope, thickness, relief, and H

  2. 利用家蚕核型多角体病毒Bac-to-Bac表达系统在BmN细胞中可溶性表达PRG-1蛋白%Soluble Expression of PRG-1 in BmN Cells Using Bombyx mori Nucleopolyhedrovirus Bac-to-Bac Expression System

    郝碧芳; 沈兴家; 王猛; 黄金山


    The baculovirus expression system Bac-to-Bac has been widely used in expression of exogenous proteins owing to its convenience in operation and other advantages.In this study,a fusion protein of high molecular mass containing PRG-1,encoded by piwi-related gene,was expressed using the newly constructed Bombyx mori nucleopolyhedrovirus (BmNPV) Bac-to-Bac system.To achieve better expression level,the dose of infection and cells' harvest time were optimized,and the fusion protein was purified by GST affinity chromatography.Our results indicated that the recombinant GST-PRG-1 expressed in BmN cells was in soluble form.The optimized expression condition was to infect the cells by 1 multiplicity of infection (MOI) and to harvest cells at 96 h post infection.The obtained data show that the newly constructed BmNPV Bac-to-Bac expression system can be used to express protein of hiah molecular mass in soluble form.%杆状病毒Bac-to-Bac表达系统由于操作简便等优点,被广泛应用于外源蛋白的表达.利用新构建的家蚕核型多角体病毒Bac-to-Bac系统可溶性表达一个大分子质量的融合蛋白—piwi相关基因编码蛋白PRG-1.为了提高目的蛋白的表达量,对重组病毒感染剂量及产物收获时间进行优化,并利用GST亲和层析纯化融合蛋白.结果表明在家蚕卵巢培养细胞BmN中表达的重组GST-PRG-1是可溶性蛋白;最佳的感染条件是病毒粒子对BmN细胞的感染复数(MOI)=1,并在感染后96 h收获细胞.试验结果表明,新构建的家蚕核型多角体病毒Bac-to-Bac表达系统可用于大分子蛋白的可溶性表达.

  3. Pharmaceuticals and pesticides in reclaimed water: Efficiency assessment of a microfiltration-reverse osmosis (MF-RO) pilot plant.

    Rodriguez-Mozaz, Sara; Ricart, Marta; Köck-Schulmeyer, Marianne; Guasch, Helena; Bonnineau, Chloe; Proia, Lorenzo; de Alda, Miren Lopez; Sabater, Sergi; Barceló, Damià


    Water reuse is becoming a common practice in several areas in the world, particularly in those impacted by water scarcity driven by climate change and/or by rising human demand. Since conventional wastewater treatment plants (WWTPs) are not able to efficiently remove many organic contaminants and pathogens, more advanced water treatment processes should be applied to WWTP effluents for water reclamation purposes. In this work, a pilot plant based on microfiltration (MF) followed by reverse osmosis (RO) filtration was applied to the effluents of an urban WWTP. Both the WWTP and the pilot plant were investigated with regards to the removal of a group of relevant contaminants widely spread in the environment: 28 pharmaceuticals and 20 pesticides. The combined treatment by the MF-RO system was able to quantitatively remove the target micropollutants present in the WWTP effluents to values either in the low ng/L range or below limits of quantification. Monitoring of water quality of reclaimed water and water reclamation sources is equally necessary to design the most adequate treatment procedures aimed to water reuse for different needs.

  4. Transcriptome Analysis of Genes Involved in Dendrobine Biosynthesis in Dendrobium nobile Lindl. Infected with Mycorrhizal Fungus MF23 (Mycena sp.).

    Li, Qing; Ding, Gang; Li, Biao; Guo, Shun-Xing


    Content determination and microscopic observation proved that dendrobine accumulation in the stem of Dendrobium nobile Lindl. increased after infection with mycorrhizal fungus MF23 (Mycena sp.). Large-scale transcriptome sequencing of symbiotic and asymbiotic D. nobile revealed that 30 unigenes encoding proteins were possibly related to the biosynthesis of dendrobine sesquiterpene backbone. A qRT-PCR experiment of 16 unigenes, selected randomly, proved that there were significant changes in the expression levels of AACT, MVD, PMK and TPS21 at 9 weeks after inoculation. These results implied that MF23 might stimulate dendrobine biosynthesis by regulating the expressions of genes involved in the mevalonate (MVA) pathway. The biogenetic pathway of dendrobine was suggested systematically according to the structural features of dendrobine alkaloids and their sesquiterpene precursors, which implied that post-modification enzymes might play a major role in dendrobine biosynthesis. Thus, genes encoding post-modification enzymes, including cytochrome P450, aminotransferase and methyltransferase, were screened for their possible involvement in dendrobine biosynthesis. This study provides a good example of endophytes promoting the formation of bioactive compounds in their host and paves the way for further investigation of the dendrobine biosynthetic pathway.

  5. Characteristics of Highly Polymorphic Segmental Copy-Number Variations Observed in Japanese by BAC-Array-CGH

    Takahashi, Norio; Satoh, Yasunari; Sasaki, Keiko; Shimoichi, Yuko; Sugita, Keiko; Katayama, Hiroaki


    Segmental copy-number variations (CNVs) may contribute to genetic variation in humans. Reports of the existence and characteristics of CNVs in a large Japanese cohort are quite limited. We report the data from a large Japanese population. We conducted population screening for 213 unrelated Japanese individuals using comparative genomic hybridization based on a bacterial artificial chromosome microarray (BAC-aCGH). We summarize the data by focusing on highly polymorphic CNVs in ≥5.0% of the individual, since they may be informative for demonstrating the relationships between genotypes and their phenotypes. We found a total of 680 CNVs at 16 different BAC-regions in the genome. The majority of the polymorphic CNVs presented on BAC-clones that overlapped with regions of segmental duplication, and the majority of the polymorphic CNVs observed in this population had been previously reported in other publications. Some of the CNVs contained genes which might be related to phenotypic heterogeneity among individuals. PMID:21197411

  6. Characterization of a novel gene, BcMF7, that is expressed preferentially in pollen of Brassica campestris L. ssp. Chinensis Makino

    HUANG Li; CAO JiaShu; ZHANG YuChao; YE YiQun


    Pollen formation is important for plant sexual reproduction, To identify the genes that are involved in pollen formation, we performed the genome-wide transcriptional profiling in the flower buds of both male meiotic cytokinesis (mmc) mutant and its wild-type plants of Brassica campestris L. ssp. chinensis, syn. B. rapa L. ssp. chinensis, cDNA-amplified fragment length polymorphism (cDNA-AFLP) analysis showed that the mmc mutation resulted in changes in expression of a variety of genes. BcMF7, a transcript-derived fragment (TDF) accumulated in the wild-type flower buds was further characterized.The BcMF7 gene has 1161 bp in length with two introns. The full-length BcMF7 cDNA has 609 bp in length and encodes a protein of 129 amino acids. The deduced amino acid sequence of BcMF7 protein shares no similarity to any function-known protein in Swiss-Prot database, but has 8 protein kinase C phosphorylation sites, 2 casein kinase Ⅱ phosphorylation sites, 2 tyrosine kinase phosphorylation sites,2 N-glycosylation sites and 2 N-myristoylation sites. Spatial and temporal expression patterns analysis showed that BcMF7 was expressed exclusively in pollen. The expression signal of BcMF7 was first detected at the tetrad stage of microspore development, reached a peak level at the uninucleate stage,and decreased to a slightly low level at the mature pollen stage. All these results show that BcMF7 may play a certain role in the signal transduction during pollen development.

  7. Characterization of a novel gene, BcMF7,that is expressed preferentially in pollen of Brassica campestris L.ssp. chinensis Makino


    Pollen formation is important for plant sexual reproduction. To identify the genes that are involved in pollen formation, we performed the genome-wide transcriptional profiling in the flower buds of both male meiotic cytokinesis (mmc) mutant and its wild-type plants of Brassica campestris L. ssp. chinen-sis, syn. B. rapa L. ssp. chinensis. cDNA-amplified fragment length polymorphism (cDNA-AFLP) analy-sis showed that the mmc mutation resulted in changes in expression of a variety of genes. BcMF7, a transcript-derived fragment (TDF) accumulated in the wild-type flower buds was further characterized. The BcMF7 gene has 1161 bp in length with two introns. The full-length BcMF7 cDNA has 609 bp in length and encodes a protein of 129 amino acids. The deduced amino acid sequence of BcMF7 protein shares no similarity to any function-known protein in Swiss-Prot database, but has 8 protein kinase C phosphorylation sites, 2 casein kinase II phosphorylation sites, 2 tyrosine kinase phosphorylation sites, 2 N-glycosylation sites and 2 N-myristoylation sites. Spatial and temporal expression patterns analysis showed that BcMF7 was expressed exclusively in pollen. The expression signal of BcMF7 was first detected at the tetrad stage of microspore development, reached a peak level at the uninucleate stage, and decreased to a slightly low level at the mature pollen stage. All these results show that BcMF7 may play a certain role in the signal transduction during pollen development.

  8. Impact of shade on outdoor thermal comfort—a seasonal field study in Tempe, Arizona

    Middel, Ariane; Selover, Nancy; Hagen, Björn; Chhetri, Nalini


    Shade plays an important role in designing pedestrian-friendly outdoor spaces in hot desert cities. This study investigates the impact of photovoltaic canopy shade and tree shade on thermal comfort through meteorological observations and field surveys at a pedestrian mall on Arizona State University's Tempe campus. During the course of 1 year, on selected clear calm days representative of each season, we conducted hourly meteorological transects from 7:00 a.m. to 6:00 p.m. and surveyed 1284 people about their thermal perception, comfort, and preferences. Shade lowered thermal sensation votes by approximately 1 point on a semantic differential 9-point scale, increasing thermal comfort in all seasons except winter. Shade type (tree or solar canopy) did not significantly impact perceived comfort, suggesting that artificial and natural shades are equally efficient in hot dry climates. Globe temperature explained 51 % of the variance in thermal sensation votes and was the only statistically significant meteorological predictor. Important non-meteorological factors included adaptation, thermal comfort vote, thermal preference, gender, season, and time of day. A regression of subjective thermal sensation on physiological equivalent temperature yielded a neutral temperature of 28.6 °C. The acceptable comfort range was 19.1 °C-38.1 °C with a preferred temperature of 20.8 °C. Respondents exposed to above neutral temperature felt more comfortable if they had been in air-conditioning 5 min prior to the survey, indicating a lagged response to outdoor conditions. Our study highlights the importance of active solar access management in hot urban areas to reduce thermal stress.

  9. Construction of a nurse shark (Ginglymostoma cirratum bacterial artificial chromosome (BAC library and a preliminary genome survey

    Inoko Hidetoshi


    Full Text Available Abstract Background Sharks are members of the taxonomic class Chondrichthyes, the oldest living jawed vertebrates. Genomic studies of this group, in comparison to representative species in other vertebrate taxa, will allow us to theorize about the fundamental genetic, developmental, and functional characteristics in the common ancestor of all jawed vertebrates. Aims In order to obtain mapping and sequencing data for comparative genomics, we constructed a bacterial artificial chromosome (BAC library for the nurse shark, Ginglymostoma cirratum. Results The BAC library consists of 313,344 clones with an average insert size of 144 kb, covering ~4.5 × 1010 bp and thus providing an 11-fold coverage of the haploid genome. BAC end sequence analyses revealed, in addition to LINEs and SINEs commonly found in other animal and plant genomes, two new groups of nurse shark-specific repetitive elements, NSRE1 and NSRE2 that seem to be major components of the nurse shark genome. Screening the library with single-copy or multi-copy gene probes showed 6–28 primary positive clones per probe of which 50–90% were true positives, demonstrating that the BAC library is representative of the different regions of the nurse shark genome. Furthermore, some BAC clones contained multiple genes, making physical mapping feasible. Conclusion We have constructed a deep-coverage, high-quality, large insert, and publicly available BAC library for a cartilaginous fish. It will be very useful to the scientific community interested in shark genomic structure, comparative genomics, and functional studies. We found two new groups of repetitive elements specific to the nurse shark genome, which may contribute to the architecture and evolution of the nurse shark genome.

  10. The relationship of the Brief Assessment of Cognition in Schizophrenia (BACS) to functional capacity and real-world functional outcome.

    Keefe, Richard S E; Poe, Margaret; Walker, Trina M; Harvey, Philip D


    The Brief Assessment of Cognition in Schizophrenia (BACS) assesses five different domains of cognitive function with six tests, and takes about 30-35 minutes to complete in patients with schizophrenia. Previous work has demonstrated the reliability of this measure, and its sensitivity to the deficits of schizophrenia. However, the relationship of this brief cognitive measure to functional outcome has not been determined. Further, future registration trials for potentially cognitive enhancing compounds may not only assess efficacy with cognitive performance measures, but with assessments of real-world functional outcome and functional capacity. The purpose of this study was to determine the relationship between the BACS and a potential co-primary measure for treatment studies of cognition in schizophrenia, and to determine if such a measure accounts for significant variance in functioning beyond that provided by cognitive function. The current study assessed 60 patients with schizophrenia over the course of six months. Cognitive functions were measured with the BACS. Functional capacity was measured with the UCSD Performance-based Skills Assessment (UPSA). Real-world functional outcome was measured with the Independent Living Skills Inventory (ILSI). BACS composite scores were significantly correlated with functional capacity as measured by the UPSA (r = .65, df = 55, p BACS. These data suggest that brief cognitive assessments such as the BACS are able to assess aspects of cognition that are related to important functional measures in clinical trials of cognitive enhancement. They also suggest that the measures being considered as potential co-primary indicators of cognitive function for registration trials are significantly correlated with cognition as assessed by brief cognitive assessments.

  11. Aerobic biodegradation of a sulfonated phenylazonaphthol dye by a bacterial community immobilized in a multistage packed-bed BAC reactor.

    Ruiz-Arias, Alfredo; Juárez-Ramírez, Cleotilde; de los Cobos-Vasconcelos, Daniel; Ruiz-Ordaz, Nora; Salmerón-Alcocer, Angélica; Ahuatzi-Chacón, Deifilia; Galíndez-Mayer, Juvencio


    A microbial community able to aerobically degrade the azo dye Acid Orange 7 was selected from riparian or lacustrine sediments collected at sites receiving textile wastewaters. Three bacterial strains, pertaining to the genera Pseudomonas, Arthrobacter, and Rhizobium, constitute the selected community. The biodegradation of AO7 was carried out in batch-suspended cell culture and in a continuously operated multistage packed-bed BAC reactor. The rapid decolorization observed in batch culture, joined to a delay of about 24 h in COD removal and cell growth, suggests that enzymes involved in biodegradation of the aromatic amines generated after AO7 azo-bond cleavage (1-amino-2-naphthol [1-A2N] and 4-aminobenzenesulfonic acid [4-ABS]), are inducible in this microbial consortium. After this presumptive induction period, the accumulated byproducts, measured through COD, were partially metabolized and transformed in cell mass. At all azo dye loading rates used, complete removal of AO7 and 1-A2N was obtained in the multistage packed-bed BAC reactor (PBR).; however, the overall COD (eta ( COD )) and 4-ABS (eta ( ABS )) removal efficiencies obtained in steady state continuous culture were about 90%. Considering the toxicity of 1-A2N, its complete removal has particular relevance. In the first stages of the packed-bed BAC reactor (Fig. 4a-c), major removal was observed. In the last stage, only a slight removal of COD and 4-ABS was obtained. Comparing to several reported studies, the continuously operated multistage packed-bed BAC reactor showed similar or superior results. In addition, the operation of large-packed-bed BAC reactors could be improved by using several shallow BAC bed stages, because the pressure drop caused by bed compaction of a support material constituted by small and fragile particles can be reduced.

  12. Annotation and BAC/PAC localization of nonredundant ESTs from drought-stressed seedlings of an indica rice

    P. Ravindra Babu; A. Chandra Sekhar; Nagabhushana Ithal; G. Markandeya; Arjula R. Reddy


    To decipher the genes associated with drought stress response and to identify novel genes in rice, we utilized 1540 high-quality expressed sequence tags (ESTs) for functional annotation and mapping to rice genomic sequences. These ESTs were generated earlier by 3′-end single-pass sequencing of 2000 cDNA clones from normalized cDNA libraries constructed from drought-stressed seedlings of an indica rice. A rice UniGene set of 1025 transcripts was constructed from this collection through the BLASTN algorithm. Putative functions of 559 nonredundant ESTs were identified by BLAST similarity search against public databases. Putative functions were assigned at a stringency E value of 10-6 in BLASTN and BLASTX algorithms. To understand the gene structure and function further, we have utilized the publicly available finished and unfinished rice BAC/PAC (BAC, bacterial artificial chromosome; PAC, P1 artificial chromosome) sequences for similarity search using the BLASTN algorithm. Further, 603 nonredundant ESTs have been mapped to BAC/PAC clones. BAC clones were assigned by a homology of above 95% identity along 90% of EST sequence length in the aligned region. In all, 700 ESTs showed rice EST hits in GenBank. Of the 325 novel ESTs, 128 were localized to BAC clones. In addition, 127 ESTs with identified putative functions but with no homology in IRGSP (International Rice Genome Sequencing Program) BAC/PAC sequences were mapped to the Chinese WGS (whole genome shotgun contigs) draft sequence of the rice genome. Functional annotation uncovered about a hundred candidate ESTs associated with abiotic stress in rice and Arabidopsis that were previously reported based on microarray analysis and other studies. This study is a major effort in identifying genes associated with drought stress response and will serve as a resource to rice geneticists and molecular biologists.

  13. Methods for high throughput validation of amplified fragment pools of BAC DNA for constructing high resolution CGH arrays

    Malloff Chad A


    Full Text Available Abstract Background The recent development of array based comparative genomic hybridization (CGH technology provides improved resolution for detection of genomic DNA copy number alterations. In array CGH, generating spotting solution is a multi-step process where bacterial artificial chromosome (BAC clones are converted to replenishable PCR amplified fragments pools (AFP for use as spotting solution in a microarray format on glass substrate. With completion of the human and mouse genome sequencing, large BAC clone sets providing complete genome coverage are available for construction of whole genome BAC arrays. Currently, Southern hybridization, fluorescent in-situ hybridization (FISH, and BAC end sequencing methods are commonly used to identify the initial BAC clone but not the end product used for spotting arrays. The AFP sequencing technique described in this study is a novel method designed to verify the identity of array spotting solution in a high throughput manner. Results We show here that Southern hybridization, FISH, and AFP sequencing can be used to verify the identity of final spotting solutions using less than 10% of the AFP product. Single pass AFP sequencing identified over half of the 960 AFPs analyzed. Moreover, using two vector primers approximately 90% of the AFP spotting solutions can be identified. Conclusions In this feasibility study we demonstrate that current methods for identifying initial BAC clones can be adapted to verify the identity of AFP spotting solutions used in printing arrays. Of these methods, AFP sequencing proves to be the most efficient for large scale identification of spotting solution in a high throughput manner.


    Supartono Supartono


    Full Text Available The efforts to get a new antibiotic require to be done continuously, because infection diseases still become the main health problems in Indonesia. A new local strain of Bacillus subtilis BAC4 has been known producing an antibiotic that inhibites Serratia marcescens ATCC 27117 growth. Nevertheless, the optimum conditions have not been studied seriously. The objective of this research was to conduct mutation on B. subtilis BAC4 in order to obtain a mutant cell that overproduct in producing antibiotic. The mutation process was performed by using acridine orange of 1 g.L-1 randomly at various volumes. The production of antibiotic was conducted using batch fermentation and antibiotic assay was performed with agar absorption method using S.  marcescens ATCC 27117 as bacteria assay. Research result provided a B. subtilis M10 mutant with overproduction of antibiotic. Characterization of B. subtilis M10 mutant showed that the mutant cell has size of (0.5-1.0 µm x (1.85-2.5 µm; spore has the form of ellipse with thick wavy wall, positive reaction for catalase, and forming acid from glucose and xylose.   Keywords: mutant, Bacillus, acridin, and antibiotics

  15. [The improvement and application of piggyBac transposon system in mammals].

    Qian, Qiujie; Che, Jiaqian; Ye, Lupeng; Zhong, Boxiong


    The piggyBac (PB) transposon system is a useful genomic engineering tool due to its high transposition efficiency, precise excision, semi-random insertion and large cargo capacity. But, it still needs to further improve the transgenic efficiency and reduce the risk of endogenous disruption caused by the random insertion of exogenous gene, especially in transgenic experiments of individual mammals. In recent studies, the PB transposase is fused with a DNA binding protein as a chimeric protein, which can guide the transposon to pre-designed loci. Besides, PB transposases obtained by mutagenesis have dramatically enhanced transposition activity and generated a novel function which is excision competent and integration defective. Furthermore, PB transposon system can carry large exogenous DNA fragments up to 207 kb when combining with the bacterial artificial chromosome vector. So far, these modified transposon systems have been widely applied in genome studies, gene therapy and induced pluripotent stem cells (iPS cells). In this study, we review the latest studies on piggyBac transposon system and its application prospect.

  16. MBBR evaluation for oil refinery wastewater treatment, with post-ozonation and BAC, for wastewater reuse.

    Schneider, E E; Cerqueira, A C F P; Dezotti, M


    This work evaluated the performance of a Moving Bed Biofilm Reactor (MBBR) in the treatment of an oil refinery wastewater. Also, it investigated the possibility of reuse of the MBBR effluent, after ozonation in series with a biological activated carbon (BAC) column. The best performance of the MBBR was achieved with a hydraulic retention time (HRT) of 6 hours, employing a bed to bioreactor volume ratio (V(B)/V(R)) of 0.6. COD and N-NH₄(+) MBBR effluent concentrations ranged from 40 to 75 mg L⁻¹ (removal efficiency of 69-89%) and 2 to 6 mg L⁻¹ (removal efficiency of 45-86%), respectively. Ozonation carried out for 15 min with an ozone concentration of 5 mg L⁻¹ was able to improve the treated wastewater biodegradability. The treatment performance of the BAC columns was practically the same for ozonated and non ozonated MBBR effluents. The dissolved organic carbon (DOC) content of the columns of the activated carbon columns (CAG) was in the range of 2.1-3.8 mg L⁻¹, and the corresponding DOC removal efficiencies were comprised between 52 and 75%. The effluent obtained at the end of the proposed treatment presented a quality, which meet the requirements for water reuse in the oil refinery.

  17. A New Normalizing Algorithm for BAC CGH Arrays with Quality Control Metrics

    Jeffrey C. Miecznikowski


    Full Text Available The main focus in pin-tip (or print-tip microarray analysis is determining which probes, genes, or oligonucleotides are differentially expressed. Specifically in array comparative genomic hybridization (aCGH experiments, researchers search for chromosomal imbalances in the genome. To model this data, scientists apply statistical methods to the structure of the experiment and assume that the data consist of the signal plus random noise. In this paper we propose “SmoothArray”, a new method to preprocess comparative genomic hybridization (CGH bacterial artificial chromosome (BAC arrays and we show the effects on a cancer dataset. As part of our R software package “aCGHplus,” this freely available algorithm removes the variation due to the intensity effects, pin/print-tip, the spatial location on the microarray chip, and the relative location from the well plate. removal of this variation improves the downstream analysis and subsequent inferences made on the data. Further, we present measures to evaluate the quality of the dataset according to the arrayer pins, 384-well plates, plate rows, and plate columns. We compare our method against competing methods using several metrics to measure the biological signal. With this novel normalization algorithm and quality control measures, the user can improve their inferences on datasets and pinpoint problems that may arise in their BAC aCGH technology.

  18. Analysis of chromosome conservation in Lemur catta studied by chromosome paints and BAC/PAC probes.

    Cardone, Maria Francesca; Ventura, Mario; Tempesta, Sergio; Rocchi, Mariano; Archidiacono, Nicoletta


    A panel of human chromosome painting probes and bacterial and P1 artificial chromosome (BAC/PAC) clones were used in fluorescence in situ hybridization (FISH) experiments to investigate the chromosome conservation of the ring-tailed lemur (Lemur catta, LCA) with respect to human. Whole chromosome paints specific for human chromosomes 7, 9, 11, 13, 14, 17, 18, 20, 21, and X were found to identify a single chromosome or an uninterrupted chromosomal region in LCA. A large set of partial chromosome paints and BAC/PAC probes were then used to refine the characterization of the rearrangements differentiating the two karyotypes. The results were also used to reconstruct the ancestral Lemuridae karyotype. Lemur catta, indeed, can be used as an outgroup, allowing symplesiomorphic (ancestral) rearrangements to be distinguished from apomorphic (derived) rearrangements in lemurs. Some LCA chromosomes are difficult to distinguish morphologically. The 'anchorage' of most LCA chromosomes to specific probes will contribute to the standardization of the karyotype of this species.

  19. An Innovative Process to Improve Turbidity and Organics Removal by BAC Filters

    MIAO Jia; ZHAO Qingliang; WANG Baozhen; LI Ji; ZHANG Jinsong


    The turbidity criterion for the product water of a WTP according to the State Project ‘863' on the safeguard technology of drinking water in the southern areas of China is 0.1 NTU. The turbidity removal in the activated carbon filter was analyzed in a pilot-scale test and an innovative technology to improve the turbidity removal in a biologically activated carbon (BAC) filter was put forward in order to meet the criterion. Experimental results showed that the enhanced filtration by adding polymerized aluminium chloride (PAC) into the BAC filter was quite effective in turbidity control. The effluent turbidity was kept at a stable level (mean) of 0.033 NTU with a high removal of about 80% for influent turbidity of 0.110 -0240 NTU with an addition of PAC at 0.05 mg L-1, meeting the requirement for filtrate turbidity equal to or less than 0.1NTUC totally. In addition, the larger the PAC dosage was, the lower the effluent turbidity was. However, further improvement of turbidity removal was not obvious for PAC dosages beyond 0.10 mg L- 1, and an optimal PAC dosage in the range of 0.05 - 0.10 mg L- 1 was proposed.

  20. Cellular dissection of the spinal cord motor column by BAC transgenesis and gene trapping in zebrafish

    Kazuhide eAsakawa


    Full Text Available Bacterial artificial chromosome (BAC transgenesis and gene/enhancer trapping are effective approaches for identification of genetically defined neuronal populations in the central nervous system (CNS. Here, we applied these techniques to zebrafish (danio rerio in order to obtain insights into the cellular architecture of the axial motor column in vertebrates. First, by using the BAC for the Mnx class homeodomain protein gene mnr2b/mnx2b, we established the mnGFF7 transgenic line expressing the Gal4FF transcriptional activator in a large part of the motor column. Single cell labelling of Gal4FF-expressing cells in the mnGFF7 line enabled a detailed investigation of the morphological characteristics of individual spinal motoneurons, as well as the overall organisation of the motor column in a spinal segment. Secondly, from a large-scale gene trap screen, we identified transgenic lines that marked discrete subpopulations of spinal motoneurons with Gal4FF. Molecular characterisation of these lines led to the identification of the ADAMTS3 gene, which encodes an evolutionarily conserved ADAMTS family of peptidases and is dynamically expressed in the ventral spinal cord. The transgenic fish established here, along with the identified gene, should facilitate an understanding of the cellular and molecular architecture of the spinal cord motor column and its connection to muscles in vertebrates.

  1. Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision.

    Nishizawa-Yokoi, Ayako; Endo, Masaki; Ohtsuki, Namie; Saika, Hiroaki; Toki, Seiichi


    Precise genome engineering via homologous recombination (HR)-mediated gene targeting (GT) has become an essential tool in molecular breeding as well as in basic plant science. As HR-mediated GT is an extremely rare event, positive-negative selection has been used extensively in flowering plants to isolate cells in which GT has occurred. In order to utilize GT as a methodology for precision mutagenesis, the positive selectable marker gene should be completely eliminated from the GT locus. Here, we introduce targeted point mutations conferring resistance to herbicide into the rice acetolactate synthase (ALS) gene via GT with subsequent marker excision by piggyBac transposition. Almost all regenerated plants expressing piggyBac transposase contained exclusively targeted point mutations without concomitant re-integration of the transposon, resulting in these progeny showing a herbicide bispyribac sodium (BS)-tolerant phenotype. This approach was also applied successfully to the editing of a microRNA targeting site in the rice cleistogamy 1 gene. Therefore, our approach provides a general strategy for the targeted modification of endogenous genes in plants.

  2. A reliable and efficient method for deleting operational sequences in PACs and BACs.

    Nistala, Ravi; Sigmund, Curt D


    P1-derived artificial chromosomes (PACs) and bacterial artificial chromosomes (BACs) have become very useful as tools to study gene expression and regulation in cells and in transgenic mice. They carry large fragments of genomic DNA (> or =100 kb) and therefore may contain all of the cis-regulatory elements required for expression of a gene. Because of this, even when inserted randomly in the genome, they can emulate the native environment of a gene resulting in a tightly regulated pattern of expression. Because these large genomic clones often contain DNA sequences which can manipulate chromatin at the local level, they become immune to position effects which affect expression of smaller transgenes, and thus their expression is proportional to copy number. Transgenic mice containing large BACs and PACs have become excellent models to examine the regulation of gene expression. Their usefulness would certainly be increased if easy and efficient methods are developed to manipulate them. We describe herein a method to make deletion mutations reliably and efficiently using a novel modification of the Chi-stimulated homologous recombination method. Specifically, we generated and employed a Lox511 'floxed' CAM resistance marker that first affords selection for homologous recombination in Escherichia coli, and then can be easily deleted leaving only a single Lox511 site as the footprint.

  3. BAC-pool sequencing and analysis confirms growth-associated QTLs in the Asian seabass genome

    Shen, Xueyan; Ngoh, Si Yan; Thevasagayam, Natascha May; Prakki, Sai Rama Sridatta; Bhandare, Pranjali; Tan, Andy Wee Kiat; Tan, Gui Quan; Singh, Siddharth; Phua, Norman Chun Han; Vij, Shubha; Orbán, László


    The Asian seabass is an important marine food fish that has been cultured for several decades in Asia Pacific. However, the lack of a high quality reference genome has hampered efforts to improve its selective breeding. A 3D BAC pool set generated in this study was screened using 22 SSR markers located on linkage group 2 which contains a growth-related QTL region. Seventy-two clones corresponding to 22 FPC contigs were sequenced by Illumina MiSeq technology. We co-assembled the MiSeq-derived scaffolds from each FPC contig with error-corrected PacBio reads, resulting in 187 sequences covering 9.7 Mb. Eleven genes annotated within this region were found to be potentially associated with growth and their tissue-specific expression was investigated. Correlation analysis demonstrated that SNPs in ctsb, skp1 and ppp2ca can be potentially used as markers for selecting fast-growing fingerlings. Conserved syntenies between seabass LG2 and five other teleosts were identified. This study i) provided a 10 Mb targeted genome assembly; ii) demonstrated NGS of BAC pools as a potential approach for mining candidates underlying QTLs of this species; iii) detected eleven genes potentially responsible for growth in the QTL region; and iv) identified useful SNP markers for selective breeding programs of Asian seabass. PMID:27821852

  4. Cytogenetical anchoring of sheep linkage map and syntenic groups using a sheep BAC library

    Cribiu Edmond-Paul


    Full Text Available Abstract In order to simultaneously integrate linkage and syntenic groups to the ovine chromosomal map, a sheep bacterial artificial chromosome (BAC library was screened with previously assigned microsatellites using a sheep-hamster hybrid panel and genetic linkage. Thirty-three BACs were obtained, fluorescently labelled and hybridised on sheep-goat hybrid metaphases (2n = 57. This study allowed us, (i, to anchor all linkage groups on sheep chromosomes, (ii, to give information on the probable position of the centromere on the linkage map for the centromeric chromosomes, (iii, to contradict the previous orientation of the ovine × linkage group by the mapping of BMS1008 on OARXq38. Concerning our somatic cell hybrid panel, this study resulted in the assignment of all the previously unassigned groups to ovine chromosomes and a complete characterisation of the hybrid panel. In addition, since hybridisations were performed on a sheep-goat hybrid, new marker/anchoring points were added to the caprine cytogenetic map.

  5. BacHbpred: Support Vector Machine Methods for the Prediction of Bacterial Hemoglobin-Like Proteins

    MuthuKrishnan Selvaraj


    Full Text Available The recent upsurge in microbial genome data has revealed that hemoglobin-like (HbL proteins may be widely distributed among bacteria and that some organisms may carry more than one HbL encoding gene. However, the discovery of HbL proteins has been limited to a small number of bacteria only. This study describes the prediction of HbL proteins and their domain classification using a machine learning approach. Support vector machine (SVM models were developed for predicting HbL proteins based upon amino acid composition (AC, dipeptide composition (DC, hybrid method (AC + DC, and position specific scoring matrix (PSSM. In addition, we introduce for the first time a new prediction method based on max to min amino acid residue (MM profiles. The average accuracy, standard deviation (SD, false positive rate (FPR, confusion matrix, and receiver operating characteristic (ROC were analyzed. We also compared the performance of our proposed models in homology detection databases. The performance of the different approaches was estimated using fivefold cross-validation techniques. Prediction accuracy was further investigated through confusion matrix and ROC curve analysis. All experimental results indicate that the proposed BacHbpred can be a perspective predictor for determination of HbL related proteins. BacHbpred, a web tool, has been developed for HbL prediction.

  6. Characterization of Porcine Endogenous Retrovirus Clones from the NIH Miniature Pig BAC Library

    Seong-Lan Yu


    Full Text Available Pigs have been considered as donors for xenotransplantation in the replacement of human organs and tissues. However, porcine endogenous retroviruses (PERVs might transmit new infectious disease to humans during xenotransplantation. To investigate PERV integration sites, 45 PERV-positive BAC clones, including 12 PERV-A, 16 PERV-B, and 17 PERV-C clones, were identified from the NIH miniature pig BAC library. The analysis of 12 selected full-length sequences of PERVs, including the long terminal repeat (LTR region, identified the expected of open reading frame length, an indicative of active PERV, in all five PERV-C clones and one of the four PERV-B clones. Premature stop codons were observed in only three PERV-A clones. Also, eleven PERV integration sites were mapped using a 5000-rad IMpRH panel. The map locations of PERV-C clones have not been reported before, thus they are novel PERV clones identified in this study. The results could provide basic information for the elimination of site-specific PERVs in selection of pigs for xenotransplantation.


    Denas Symond


    Full Text Available ABSTRACTThe aim of this study was to determine the efficacy of formulated tempe-yam supplementation on weight for age z-score of underweight children aged 2-4 years. A quasi experiment pre-post test with control group design was applied in this study for four weeks. The intervention group consist of 19 children given formulated tempe-yam 100 g/d; and the control group consist of 19 children given biscuit 100 g/d in Padang Pariaman district, West Sumatera. Data collected included weight, height, and albumin level. Paired t-test was applied for the data analysis. The results of this study found significant differences in albumin level before and after on control group (p<0.05. Then, the results of this study also found significant differences in weight for age z-score before and after on intervention group (p<0.05. Therefore, formulated tempe-yam supplementation as food sumplementation need to be considered for underweight children.Keywords: albumin level, food suplementation, tempe-yam, weight-for age z-scoreABSTRAKPenelitian ini bertujuan untuk mengetahui efikasi dari suplementasi formula tempe-bengkuang berdasarkan z-skor BB/U pada anak gizi kurang usia 2-4 tahun. Penelitian ini dilakukan di Kabupaten Padang Pariaman, Sumatera Barat,menggunakan pendekatan quasi experiment pre-post test with control group design selama empat minggu. Kelompok intervensi terdiri atas 19 anak yang diberi formula tempe-bengkuang sebanyak 100 g/hari dan kelompok kontrol terdiri 19 anak yang diberi biskuit 100 g/hari. Data yang dikumpulkan adalah berat badan,tinggi badan, dan kadar albumin anak. Pengujian statistik menggunakan paired t-test. Terdapat perbedaan kadar albumin yang signifikan sebelum dan sesudah intervensi pada kelompok biskuit (p<0,05 dan terdapat perbedaaan antropometri berdasarkan BB/U yang signifikan sebelum dan sesudah intervensi pada kelompok formula tempe bengkuang (p<0,05. Penelitian ini juga menemukan adanya perubahan nilai antropometri

  8. Comparison of BAC FISH with specific telomeres and centromere probes and chromosome painting on detection of chromosome translocation induced by irradiation%BAC FISH与PAINT法检测辐射诱发染色体易位的比较

    刘青杰; 陆雪; 封江彬; 王晓维; 陈德清


    Objective To compare the efficiency of BAC FISH established in our lab and conventional chromosome painting(PAINT)on detection of radiation-induced chromosome translocation.Methods Healthy human peripheral blood samples were irradiated with 0~5.0 Gy 60Co γ-rays.Then chromosome translocations in these samples were detected with BAC FISH and PAINT using chromosomes 1.2 and 4.The genome translocation rates were calculated with observed chromosome translocation rates,and the dose-response curve of two methods were established.Results The genome translocation rates induced by 0~5.0 Gy 60Co γ-rays detected by BAC FISH and PAINT were increased with absorbed doses.The observed translocation rates with BAC FISH were higher than that with PAINT at each dose level.The dose-response curve were Y=0.043 D2+0.0008D+0.0048 for BAC FISH and Y=0.043D2+0.006D+0.0027 for PAINT.Conclusions The translocation rate detected by BAC FISH was higher than that by PAINT,and the parameters β in dose-response curve equation were same by two methods.%目的 比较自行建立的BAC FISH方法和常规染色体涂染(PAINT)方法分析辐射诱发染色体易位有效性的不同.方法 对正常人外周血照射不同剂量(0~5.0 Gy)的60Co γ射线,用1、2和4号染色体特异性端粒和着丝粒探针BAC FISH及PAINT分析染色体易位,将观察到的染色体易位率换算为全基因组易位率,并建立两种方法分析辐射诱发的染色体易位率剂量-效应曲线.结果 用两种方法分析0~5.0 Gy 60Coγ射线诱发的全基因组易位率均随着吸收剂量的增加而增高;在相同的剂量点,BAC FISH染色体易位检出率高于PAINT方法.两种方法分析吸收剂量和全基因组易位率之间的剂量-效应曲线均为二次方程模式,分别为Y=0.043D2+0.0008D+0.0048(BAC FISH)和Y=0.043D2+0.006D+0.0027(PAINT).结论 自行建立的BAC FISH方法分析辐射诱发染色体易位检出率高于常规染色体涂染方法,两种方法建立的

  9. Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region

    Pan Hui-Juan


    Full Text Available Abstract Background Giant panda is rare and endangered species endemic to China. The low rates of reproductive success and infectious disease resistance have severely hampered the development of captive and wild populations of the giant panda. The major histocompatibility complex (MHC plays important roles in immune response and reproductive system such as mate choice and mother-fetus bio-compatibility. It is thus essential to understand genetic details of the giant panda MHC. Construction of a bacterial artificial chromosome (BAC library will provide a new tool for panda genome physical mapping and thus facilitate understanding of panda MHC genes. Results A giant panda BAC library consisting of 205,800 clones has been constructed. The average insert size was calculated to be 97 kb based on the examination of 174 randomly selected clones, indicating that the giant panda library contained 6.8-fold genome equivalents. Screening of the library with 16 giant panda PCR primer pairs revealed 6.4 positive clones per locus, in good agreement with an expected 6.8-fold genomic coverage of the library. Based on this BAC library, we constructed a contig map of the giant panda MHC class II region from BTNL2 to DAXX spanning about 650 kb by a three-step method: (1 PCR-based screening of the BAC library with primers from homologous MHC class II gene loci, end sequences and BAC clone shotgun sequences, (2 DNA sequencing validation of positive clones, and (3 restriction digest fingerprinting verification of inter-clone overlapping. Conclusion The identifications of genes and genomic regions of interest are greatly favored by the availability of this giant panda BAC library. The giant panda BAC library thus provides a useful platform for physical mapping, genome sequencing or complex analysis of targeted genomic regions. The 650 kb sequence-ready BAC contig map of the giant panda MHC class II region from BTNL2 to DAXX, verified by the three-step method, offers a

  10. Controlled clinical comparison of plastic versus glass bottles of BacT/ALERT PF medium for culturing blood from children.

    Petti, Cathy A; Mirrett, Stanley; Woods, Christopher W; Reller, L Barth


    The plastic pediatric BacT/ALERT (bioMérieux, Durham, N.C.) PF (PPF) is a new nonvented aerobic culture medium in a clear plastic bottle designed to prevent breakage. We compared the performance of the new PPF bottle to that of the present glass BacT/ALERT PF bottle for the recovery of microorganisms as well as for the time to detection of growth in samples of blood obtained for culture from children. We found that the PPF and PF bottles were comparable for recovery of microorganisms and that the safety advantage of plastic bottles can be achieved without compromising performance.

  11. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

    Dereeper, Alexis; Guyot, Romain; Dubreuil Tranchant, Christine; Anthony, François; Argout, X.; Bellis, F; Combes, Marie-Christine; Gavory, F.; De Kochko, Alexandre; Kudrna, D.; Leroy, T.; Poulain, J.; Rondeau, M.; Song, X; Wing, R


    Coffee is one of the world's most important agricultural commodities. Coffee belongs to the Rubiaceae family in the euasterid I clade of dicotyledonous plants, to which the Solanaceae family also belongs. Two bacterial artificial chromosome (BAC) libraries of a homozygous doubled haploid plant of Coffea canephora were constructed using two enzymes, HindIII and BstYI. A total of 134,827 high quality BAC-end sequences (BESs) were generated from the 73,728 clones of the two libraries, and 131,41...

  12. Construction of an Americn mink Bacterial Artificial Chromosome (BAC) library and sequencing candidate genes important for the fur industry

    Anistoroaei, Razvan Marian; Hallers, Boudewijn ten; Nefedov, Michael


    of genes of interest in small genomics projects. The BAC end sequences described in this paper have been deposited in the GenBank data library [HN339419-HN341884, HN604664-HN604702]. The 454 produced contigs derived from selected clones are deposited with reference numbers [GenBank: JF288166-JF288183 &JF......BACKGROUND: Bacterial artificial chromosome (BAC) libraries continue to be invaluable tools for the genomic analysis of complex organisms. Complemented by the newly and fast growing deep sequencing technologies, they provide an excellent source of information in genomics projects. RESULTS: Here, we...

  13. Plan de comunicación integral para las aplicaciones bancarias en los smartphones: caso grupo financiero BAC Credomatic

    Komailizadeh-Lizano, Amir


    tesis de maestría -- Universidad de Costa Rica. Posgrado en Administración y Dirección de Empresas. Maestría Profesional en Administración y Dirección de Empresas con énfasis en Mercadeo y Ventas, 2011 El presente proyecto constituye una estrategia de comunicación integral para el marketing efectivo de las aplicaciones bancarias móviles del Grupo Financiero BAC Credomatic. La estrategia busca posicionar al BAC como un banco innovador y tecnológico. El trabajo se encuentra compuesto por...

  14. PCR-based Screening BAC Library and Direct End Sequencing of BAC Clones%PCR筛选BAC文库和直接BAC末端测序方法的建立

    何聪芬; 小松田隆夫


    A PCR based strategy was developed which required four steps to identify positive BAC clones from barley BAC(bacterial artificial chromosome)library.In the protocol,two levels of BAC DNA pools(super-pool and pool)were prepared for analysis.One pool is made of one plate DNAs and one super-pool is made of mixing ten consecutive 1/100 diluted pool DNAs(1~10,11~20 ect).First,super-pool DNAs were analysed and then 10 pool DNAs contained in every positive super-pool were analysed.Once positive BAC plates were identified,the bacterial cultures were dipped into PCR mixtures and reaction is made to identify positive BAC clones.The BAC clones identified by each marker were grouped into contigs.BAC-end sequence was obtained from BACs within each contig and primers were designed for the next step chromosome walking.In case of the BAC ends belong to repetitive sequence,the primers were designed based on the subcloned unique band in the contig(identified by Hind III digestion pattern).This method allows us to construct the BAC contig without the costly and time-consuming efforts,and no radioactivity harmful to the body.%建立了一种用PCR方法筛选富含高度重复序列的大麦BAC DNA 文库和直接对 BAC DNA进行末端测序的方法.用PCR技术进行大麦BAC DNA 文库(含816个平板,每个平板含384个克隆)的筛选分4步进行.在实验中,建立了两个水平的BAC DNA池(一级池和二级池).一个二级池由一个平板(含有384个克隆)的DNA 组成,一个一级池由连续10个稀释100倍的二级池的DNA混合而成(如1~10,11~20等),共82个一级池.BAC DNA 文库筛选的第一步是对82个一级池的筛选.得到阳性一级池后(如2号一级池),对其所含的10个二级池(从11~20)进行第二步筛选.得到阳性二级池后,培养相应的阳性平板的所有克隆(384个),从头开始(左上侧),每相邻的4个克隆为一组,在96孔板上(4 X 96=384) 进行第三轮PCR反应;之后对筛选结果为阳性的4

  15. DNA sequences and composition from 12 BAC clones-derived MUSB SSR markers mapped to cotton (Gossypium Hirsutum L. x G. Barbadense L.)chromosomes 11 and 21

    To discover resistance (R) and/or pathogen-induced (PR) genes involved in disease response, 12 bacterial artificial chromosome (BAC) clones from cv. Acala Maxxa (G. hirsutum) were sequenced at the Clemson University, Genomics Institute, Clemson, SC. These BACs derived MUSB single sequence repeat (SS...

  16. Identifying Distal cis-acting Gene-Regulatory Sequences by Expressing BACs Functionalized with loxP-Tn10 Transposons in Zebrafish.

    Chatterjee, Pradeep K; Shakes, Leighcraft A; Wolf, Hope M; Mujalled, Mohammad A; Zhou, Constance; Hatcher, Charles; Norford, Derek C


    Bacterial Artificial Chromosomes (BACs) are large pieces of DNA from the chromosomes of organisms propagated faithfully in bacteria as large extra-chromosomal plasmids. Expression of genes contained in BACs can be monitored after functionalizing the BAC DNA with reporter genes and other sequences that allow stable maintenance and propagation of the DNA in the new host organism. The DNA in BACs can be altered within its bacterial host in several ways. Here we discuss one such approach, using Tn10 mini-transposons, to introduce exogenous sequences into BACs for a variety of purposes. The largely random insertions of Tn10 transposons carrying lox sites have been used to position mammalian cell-selectable antibiotic resistance genes, enhancer-traps and inverted repeat ends of the vertebrate transposon Tol2 precisely at the ends of the genomic DNA insert in BACs. These modified BACs are suitable for expression in zebrafish or mouse, and have been used to functionally identify important long-range gene regulatory sequences in both species. Enhancer-trapping using BACs should prove uniquely useful in analyzing multiple discontinuous DNA domains that act in concert to regulate expression of a gene, and is not limited by genome accessibility issues of traditional enhancer-trapping methods.

  17. Intra- and interchromosomal rearrangements between cowpea [Vigna unguiculata (L.) Walp.] and common bean (Phaseolus vulgaris L.) revealed by BAC-FISH.

    Vasconcelos, Emanuelle Varão; de Andrade Fonsêca, Artur Fellipe; Pedrosa-Harand, Andrea; de Andrade Bortoleti, Kyria Cilene; Benko-Iseppon, Ana Maria; da Costa, Antônio Félix; Brasileiro-Vidal, Ana Christina


    Cowpea (Vigna unguiculata) is an annual legume grown in tropical and subtropical regions, which is economically relevant due to high protein content in dried beans, green pods, and leaves. In this work, a comparative cytogenetic study between V. unguiculata and Phaseolus vulgaris (common bean) was conducted using BAC-FISH. Sequences previously mapped in P. vulgaris chromosomes (Pv) were used as probes in V. unguiculata chromosomes (Vu), contributing to the analysis of macrosynteny between both legumes. Thirty-seven clones from P. vulgaris 'BAT93' BAC library, corresponding to its 11 linkage groups, were hybridized in situ. Several chromosomal rearrangements were identified, such as translocations (between BACs from Pv1 and Pv8; Pv2 and Pv3; as well as Pv2 and Pv11), duplications (BAC from Pv3), as well as paracentric and pericentric inversions (BACs from Pv3, and Pv4, respectively). Two BACs (from Pv2 and Pv7), which hybridized at terminal regions in almost all P. vulgaris chromosomes, showed single-copy signal in Vu. Additionally, 17 BACs showed no signal in V. unguiculata chromosomes. The present results demonstrate the feasibility of using BAC libraries in comparative chromosomal mapping and karyotype evolution studies between Phaseolus and Vigna species, and revealed several macrosynteny and collinearity breaks among both legumes.

  18. 基于MF-CDMA的低轨道通信卫星系统容量分析%Capacity analysis of LEO satellite system based on MF- CDMA connection

    张晓奇; 李法庆; 孙友伟



  19. Repetitive Genomic Elements in a European Corn Borer, Ostrinia nubilalis, BAC Library were Indicated by BAC End Sequencing and Development of Sequence Tag Site Markers: Implications for Lepidopteran Genomic Research

    The European corn borer, Ostrinia nubilalis, is a serious pest of food, fiber, and biofuel crops in Europe, North America, and Asia, and a model system for insect olfaction and speciation. A bacterial artificial chromosome (BAC) library constructed for O. nubilalis contains 36,864 clones with estim...

  20. Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa

    King Graham J


    Full Text Available Abstract Background The Multinational Brassica rapa Genome Sequencing Project (BrGSP has developed valuable genomic resources, including BAC libraries, BAC-end sequences, genetic and physical maps, and seed BAC sequences for Brassica rapa. An integrated linkage map between the amphidiploid B. napus and diploid B. rapa will facilitate the rapid transfer of these valuable resources from B. rapa to B. napus (Oilseed rape, Canola. Results In this study, we identified over 23,000 simple sequence repeats (SSRs from 536 sequenced BACs. 890 SSR markers (designated as BrGMS were developed and used for the construction of an integrated linkage map for the A genome in B. rapa and B. napus. Two hundred and nineteen BrGMS markers were integrated to an existing B. napus linkage map (BnaNZDH. Among these mapped BrGMS markers, 168 were only distributed on the A genome linkage groups (LGs, 18 distrubuted both on the A and C genome LGs, and 33 only distributed on the C genome LGs. Most of the A genome LGs in B. napus were collinear with the homoeologous LGs in B. rapa, although minor inversions or rearrangements occurred on A2 and A9. The mapping of these BAC-specific SSR markers enabled assignment of 161 sequenced B. rapa BACs, as well as the associated BAC contigs to the A genome LGs of B. napus. Conclusion The genetic mapping of SSR markers derived from sequenced BACs in B. rapa enabled direct links to be established between the B. napus linkage map and a B. rapa physical map, and thus the assignment of B. rapa BACs and the associated BAC contigs to the B. napus linkage map. This integrated genetic linkage map will facilitate exploitation of the B. rapa annotated genomic resources for gene tagging and map-based cloning in B. napus, and for comparative analysis of the A genome within Brassica species.