Accumulation of 210Po by benthic marine algae

International Nuclear Information System (INIS)

Gouvea, R.C.; Branco, M.E.C.; Santos, P.L.

1988-01-01

The accumulation of polonium 210 Po by various species of benthic marine seaweeds collected from 4 different points on the coast of Rio de Janeiro, showed variations by species and algal groups. The highest value found was in red alga, Plocamium brasiliensis followed by other organisms of the same group. In the group of the brown alga, the specie Sargassum stenophylum was outstanding. The Chlorophyta presented the lowest content of 210 Po. The algae collected in open sea, revealed greater concentration factors of 210 Po than the same species living in bays. The siliceous residue remaining after mineralization of the algae did not interfere with the detection of polonium. (author)

Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island.

Science.gov (United States)

Antranikian, Garabed; Suleiman, Marcel; Schäfers, Christian; Adams, Michael W W; Bartolucci, Simonetta; Blamey, Jenny M; Birkeland, Nils-Kåre; Bonch-Osmolovskaya, Elizaveta; da Costa, Milton S; Cowan, Don; Danson, Michael; Forterre, Patrick; Kelly, Robert; Ishino, Yoshizumi; Littlechild, Jennifer; Moracci, Marco; Noll, Kenneth; Oshima, Tairo; Robb, Frank; Rossi, Mosè; Santos, Helena; Schönheit, Peter; Sterner, Reinhard; Thauer, Rudolf; Thomm, Michael; Wiegel, Jürgen; Stetter, Karl Otto

2017-07-01

To obtain new insights into community compositions of hyperthermophilic microorganisms, defined as having optimal growth temperatures of 80 °C and above, sediment and water samples were taken from two shallow marine hydrothermal vents (I and II) with temperatures of 100 °C at Vulcano Island, Italy. A combinatorial approach of denaturant gradient gel electrophoresis (DGGE) and metagenomic sequencing was used for microbial community analyses of the samples. In addition, enrichment cultures, growing anaerobically on selected polysaccharides such as starch and cellulose, were also analyzed by the combinatorial approach. Our results showed a high abundance of hyperthermophilic archaea, especially in sample II, and a comparable diverse archaeal community composition in both samples. In particular, the strains of the hyperthermophilic anaerobic genera Staphylothermus and Thermococcus, and strains of the aerobic hyperthermophilic genus Aeropyrum, were abundant. Regarding the bacterial community, ε-Proteobacteria, especially the genera Sulfurimonas and Sulfurovum, were highly abundant. The microbial diversity of the enrichment cultures changed significantly by showing a high dominance of archaea, particularly the genera Thermococcus and Palaeococcus, depending on the carbon source and the selected temperature.

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil.

Science.gov (United States)

Bissoli, Lorena B; Bernardino, Angelo F

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil.

Benthic protists: the under-charted majority.

Science.gov (United States)

Forster, Dominik; Dunthorn, Micah; Mahé, Fréderic; Dolan, John R; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Edvardsen, Bente; Egge, Elianne; Eikrem, Wenche; Gobet, Angélique; Kooistra, Wiebe H C F; Logares, Ramiro; Massana, Ramon; Montresor, Marina; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Richards, Thomas A; Santini, Sébastien; Sarno, Diana; Siano, Raffaele; Vaulot, Daniel; Wincker, Patrick; Zingone, Adriana; de Vargas, Colomban; Stoeck, Thorsten

2016-08-01

Marine protist diversity inventories have largely focused on planktonic environments, while benthic protists have received relatively little attention. We therefore hypothesize that current diversity surveys have only skimmed the surface of protist diversity in marine sediments, which may harbor greater diversity than planktonic environments. We tested this by analyzing sequences of the hypervariable V4 18S rRNA from benthic and planktonic protist communities sampled in European coastal regions. Despite a similar number of OTUs in both realms, richness estimations indicated that we recovered at least 70% of the diversity in planktonic protist communities, but only 33% in benthic communities. There was also little overlap of OTUs between planktonic and benthic communities, as well as between separate benthic communities. We argue that these patterns reflect the heterogeneity and diversity of benthic habitats. A comparison of all OTUs against the Protist Ribosomal Reference database showed that a higher proportion of benthic than planktonic protist diversity is missing from public databases; similar results were obtained by comparing all OTUs against environmental references from NCBI's Short Read Archive. We suggest that the benthic realm may therefore be the world's largest reservoir of marine protist diversity, with most taxa at present undescribed. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea

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Haodong Liu

2017-06-01

Full Text Available Temperature, nutrients, and salinity are among the important factors constraining the distribution and abundance of microorganisms in the ocean. Marine Group II (MGII belonging to Euryarchaeota commonly dominates the planktonic archaeal community in shallow water and Marine Group I (MGI, now is called Thaumarchaeota in deeper water in global oceans. Results of quantitative PCR (qPCR and 454 sequencing in our study, however, showed the dominance of MGII in planktonic archaea throughout the water column of the northeastern South China Sea (SCS that is characterized by strong water mixing. The abundance of ammonia-oxidizing archaea (AOA representing the main group of Thaumarchaeota in deeper water in the northeastern SCS was significantly lower than in other oceanic regions. Phylogenetic analysis showed that the top operational taxonomic units (OTUs of the MGII occurring predominantly below 200 m depth may be unique in the northeastern SCS based on the observation that they are distantly related to known sequences (identity ranging from 90–94%. The abundance of MGII was also significantly correlated with total bacteria in the whole column, which may indicate that MGII and bacteria may have similar physiological or biochemical properties or responses to environmental variation. This study provides valuable information about the dominance of MGII over AOA in both shallow and deep water in the northeastern SCS and highlights the need for comprehensive studies integrating physical, chemical, and microbial oceanography.

Divergent ecosystem responses within a benthic marine community to ocean acidification.

Science.gov (United States)

Kroeker, Kristy J; Micheli, Fiorenza; Gambi, Maria Cristina; Martz, Todd R

2011-08-30

Ocean acidification is predicted to impact all areas of the oceans and affect a diversity of marine organisms. However, the diversity of responses among species prevents clear predictions about the impact of acidification at the ecosystem level. Here, we used shallow water CO(2) vents in the Mediterranean Sea as a model system to examine emergent ecosystem responses to ocean acidification in rocky reef communities. We assessed in situ benthic invertebrate communities in three distinct pH zones (ambient, low, and extreme low), which differed in both the mean and variability of seawater pH along a continuous gradient. We found fewer taxa, reduced taxonomic evenness, and lower biomass in the extreme low pH zones. However, the number of individuals did not differ among pH zones, suggesting that there is density compensation through population blooms of small acidification-tolerant taxa. Furthermore, the trophic structure of the invertebrate community shifted to fewer trophic groups and dominance by generalists in extreme low pH, suggesting that there may be a simplification of food webs with ocean acidification. Despite high variation in individual species' responses, our findings indicate that ocean acidification decreases the diversity, biomass, and trophic complexity of benthic marine communities. These results suggest that a loss of biodiversity and ecosystem function is expected under extreme acidification scenarios.

Public aquaria as long-term enrichments for investigating planktonic Archaea

Science.gov (United States)

Goldenstein, Nadine I.; Warren, Courtney E.; Lipp, Julius S.; Pagani, Mark; Hinrichs, Kai-Uwe

2016-04-01

The most abundant group of planktonic Archaea , the so-called Thaumarchaeota, represents 20% of all marine planktonic microorganisms (Karner et al., 2001) and their energy efficient performance of nitrification makes them key players in the global nitrogen- and carbon-cycle (Könneke et al., 2014). Furthermore, planktonic Archaea are considered to be the major producers of specific microbial membrane lipids that are extensively used as paleoproxies in marine climate research (Schouten et al., 2002). Therefore, assessing the parameters controlling the distribution of Archaea in the marine water column is crucial for studies of modern and past marine environments. Although diverse studies utilizing DNA- and biomarker-based approaches have constrained the turnover and distribution of marine Archaea, the environmental factors affecting their abundance and activity (e.g., Wuchter et al., 2006; Bale et al., 2013) are still poorly understood. Further, previous surveys, using enrichment cultivation and pure culture experiments, provided valuable information on adaptation of planktonic Archaea to changes of parameters affecting growth conditions, such as temperature, salinity and growth stage (Elling et al., 2014, 2015). Hence, we know that planktonic Archaea directly adapt their membranes to changing growth conditions, but also that environmental selection for individual phylogenetic groups of these organisms is also reflected in the membrane lipid pool. Extending these studies, this project further aims at constraining the environmental parameters controlling archaeal abundance in the marine environment. Public aquaria, which are comparable to perfectly monitored long-term enrichment cultures, are optimal sampling sites for this task. A comprehensive set of 120 water and substrate samples from fresh, marine and brackish systems exhibiting diverse conditions was selected from 15 public aquaria at the east and west coast of the USA. These samples were examined for their

Effects of triclosan on marine benthic and epibenthic organisms.

Science.gov (United States)

Perron, Monique M; Ho, Kay T; Cantwell, Mark G; Burgess, Robert M; Pelletier, Marguerite C

2012-08-01

Triclosan is an antimicrobial compound that has been widely used in consumer products such as toothpaste, deodorant, and shampoo. Because of its widespread use, triclosan has been detected in various environmental media, including wastewater, sewage sludge, surface waters, and sediments. Triclosan is acutely toxic to numerous aquatic organisms, but very few studies have been performed on estuarine and marine benthic organisms. For whole sediment toxicity tests, the sediment-dwelling estuarine amphipod, Ampelisca abdita, and the epibenthic mysid shrimp, Americamysis bahia, are commonly used organisms. In the present study, median lethal concentration values (LC50) were obtained for both of these organisms using water-only and whole sediment exposures. Acute 96-h water-only toxicity tests resulted in LC50 values of 73.4 and 74.3 µg/L for the amphipod and mysid, respectively. For the 7-d whole sediment toxicity test, LC50 values were 303 and 257 mg/kg (dry wt) for the amphipod and mysid, respectively. Using equilibrium partitioning theory, these whole sediment values are equivalent to interstitial water LC50 values of 230 and 190 µg/L for the amphipod and mysid, respectively, which are within a threefold difference of the observed 96-h LC50 water-only values. Triclosan was found to accumulate in polychaete tissue in a 28-d bioaccumulation study with a biota-sediment accumulation factor of 0.23 kg organic carbon/kg lipid. These data provide some of the first toxicity data for triclosan with marine benthic and epibenthic species while also indicating a need to better understand the effects of other forms of sediment carbon, triclosan ionization, and organism metabolism of triclosan on the chemical's behavior and toxicity in the aquatic environment. Copyright © 2012 SETAC.

Spatial and temporal benthic species assemblage responses with a deployed marine tidal energy device: a small scaled study.

Science.gov (United States)

Broadhurst, Melanie; Orme, C David L

2014-08-01

The addition of man-made structures to the marine environment is known to increase the physical complexity of the seafloor, which can influence benthic species community patterns and habitat structure. However, knowledge of how deployed tidal energy device structures influence benthic communities is currently lacking. Here we examined species biodiversity, composition and habitat type surrounding a tidal energy device within the European Marine Energy Centre test site, Orkney. Commercial fishing and towed video camera techniques were used over three temporal periods, from 2009 to 2010. Our results showed increased species biodiversity and compositional differences within the device site, compared to a control site. Both sites largely comprised of crustacean species, omnivore or predatory feeding regimes and marine tide-swept EUNIS habitat types, which varied over the time. We conclude that the device could act as a localised artificial reef structure, but that further in-depth investigations are required. Copyright © 2014 Elsevier Ltd. All rights reserved.

Recreational Diver Behavior and Contacts with Benthic Organisms in the Abrolhos National Marine Park, Brazil

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Giglio, Vinicius J.; Luiz, Osmar J.; Schiavetti, Alexandre

2016-03-01

In the last two decades, coral reefs have become popular among recreational divers, especially inside marine protected areas. However, the impact caused by divers on benthic organisms may be contributing to the degradation of coral reefs. We analyzed the behavior of 142 scuba divers in the Abrolhos National Marine Park, Brazil. We tested the effect of diver profile, reef type, use of additional equipment, timing, and group size on diver behavior and their contacts with benthic organisms. Eighty-eight percent of divers contacted benthic organism at least once, with an average of eight touches and one damage per dive. No significant differences in contacts were verified among gender, group size, or experience level. Artificial reef received a higher rate of contact than pinnacle and fringe reefs. Specialist photographers and sidemount users had the highest rates, while non-users of additional equipment and mini camera users had the lowest contact rates. The majority of contacts were incidental and the highest rates occurred in the beginning of a dive. Our findings highlight the need of management actions, such as the provision of pre-dive briefing including ecological aspects of corals and beginning dives over sand bottoms or places with low coral abundance. Gathering data on diver behavior provides managers with information that can be used for tourism management.

Chemical defense of early life stages of benthic marine invertebrates.

Science.gov (United States)

Lindquist, Niels

2002-10-01

Accurate knowledge of factors affecting the survival of early life stages of marine invertebrates is critically important for understanding their population dynamics and the evolution of their diverse reproductive and life-history characteristics. Chemical defense is an important determinant of survival for adult stages of many sessile benthic invertebrates, yet relatively little consideration has been given to chemical defenses at the early life stages. This review examines the taxonomic breadth of early life-stage chemical defense in relation to various life-history and reproductive characteristics, as well as possible constraints on the expression of chemical defense at certain life stages. Data on the localization of defensive secondary metabolites in larvae and the fitness-related consequences of consuming even a small amount of toxic secondary metabolites underpin proposals regarding the potential for Müllerian and Batesian mimicry to occur among marine larvae. The involvement of microbial symbionts in the chemical defense of early life stages illustrates its complexity for some species. As our knowledge of chemical defenses in early life stages grows, we will be able to more rigorously examine connections among phylogeny, chemical defenses, and the evolution of reproductive and life-history characteristics among marine invertebrates.

Experimental and in situ investigations on americium, curium and plutonium behaviour in marine benthic species: transfer from water or sediments

International Nuclear Information System (INIS)

Miramand, P.

1984-06-01

The tranfer of transuranic elements -americium, curium and plutonium- from the sediments containing them to some marine benthic species (endofauna and epifauna) was studied with a twofold approach - laboratory and in-situ investigation. The experimental investigations, divided into three parts, made it possible to specify concentration factors (F.C.), transfer factors (F.T.) and to understand the process involved for 5 benthic species. The result were refined by an in-situ study that brought new data on the marine distribution of the transuranic elements released by the La Hague plant. Finally, the localization of americium and plutonium in the tissues and cells of these species was determined by autoradiography [fr

Measurement of changes in marine benthic ecosystem function following physical disturbance by dredging

OpenAIRE

Wan Hussin, Wan Mohd Rauhan

2012-01-01

Measuring the impact of physical disturbance on macrofaunal communities and sediment composition is important given the increased demand for the exploitation and disturbance of marine ecosystems. The aim of the present investigation was to provide a comprehensive study about the extent to which the disturbance (especially aggregate dredging) may affect benthic ecosystem function. The first part of the thesis concerns a field investigation of the impacts of dredging on the be...

Multi- and hyperspectral remote sensing of tropical marine benthic habitats

Science.gov (United States)

Mishra, Deepak R.

Tropical marine benthic habitats such as coral reef and associated environments are severely endangered because of the environmental degradation coupled with hurricanes, El Nino events, coastal pollution and runoff, tourism, and economic development. To monitor and protect this diverse environment it is important to not only develop baseline maps depicting their spatial distribution but also to document their changing conditions over time. Remote sensing offers an important means of delineating and monitoring coral reef ecosystems. Over the last twenty years the scientific community has been investigating the use and potential of remote sensing techniques to determine the conditions of the coral reefs by analyzing their spectral characteristics from space. One of the problems in monitoring coral reefs from space is the effect of the water column on the remotely sensed signal. When light penetrates water its intensity decreases exponentially with increasing depth. This process, known as water column attenuation, exerts a profound effect on remotely sensed data collected over water bodies. The approach presented in this research focuses on the development of semi-analytical models that resolves the confounding influence water column attenuation on substrate reflectance to characterize benthic habitats from high resolution remotely sensed imagery on a per-pixel basis. High spatial resolution satellite and airborne imagery were used as inputs in the models to derive water depth and water column optical properties (e.g., absorption and backscattering coefficients). These parameters were subsequently used in various bio-optical algorithms to deduce bottom albedo and then to classify the benthos, generating a detailed map of benthic habitats. IKONOS and QuickBird multispectral satellite data and AISA Eagle hyperspectral airborne data were used in this research for benthic habitat mapping along the north shore of Roatan Island, Honduras. The AISA Eagle classification was

Eukaryotic Life Inhabits Rhodolith-forming Coralline Algae (Hapalidiales, Rhodophyta), Remarkable Marine Benthic Microhabitats

Science.gov (United States)

Krayesky-Self, Sherry; Schmidt, William E.; Phung, Delena; Henry, Caroline; Sauvage, Thomas; Camacho, Olga; Felgenhauer, Bruce E.; Fredericq, Suzanne

2017-04-01

Rhodoliths are benthic calcium carbonate nodules accreted by crustose coralline red algae which recently have been identified as useful indicators of biomineral changes resulting from global climate change and ocean acidification. This study highlights the discovery that the interior of rhodoliths are marine biodiversity hotspots that function as seedbanks and temporary reservoirs of previously unknown stages in the life history of ecologically important dinoflagellate and haptophyte microalgae. Whereas the studied rhodoliths originated from offshore deep bank pinnacles in the northwestern Gulf of Mexico, the present study opens the door to assess the universality of endolithic stages among bloom-forming microalgae spanning different phyla, some of public health concerns (Prorocentrum) in marine ecosystems worldwide.

Microphytobenthos in ecotoxicology: a review of the use of marine benthic diatoms in bioassays.

Science.gov (United States)

Araújo, Cristiano V M; Blasco, Julián; Moreno-Garrido, Ignacio

2010-08-01

Contamination in coastal zones is an increasing problem that adversely affects biological diversity and the functioning of coastal ecosystems. Sediment is an important compartment of these zones since large quantities of diverse contaminants can accumulate there. Whole-sediment toxicity assays are of increasing importance, and several assay methods using mainly invertebrates have been developed. However, an important part of the benthic community, the microphytobenthos (represented principally by benthic diatoms and cyanobacteria), has surprisingly been neglected. Recently, comprehensive studies have been conducted using benthic marine microalgae with the object of establishing a toxicity assay method for sediment samples. The main results published to date in the literature and obtained by our own team have been compiled and are discussed in this review. The value and feasibility of using certain organisms of the microphytobenthos group in ecotoxicology studies are also discussed, and a sediment quality guideline based on multivariate procedure has been derived from data obtained in previous studies. Finally, future perspectives for research in this field are discussed. Copyright 2010 Elsevier Ltd. All rights reserved.

First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat.

Science.gov (United States)

Muller, Félix; Brissac, Terry; Le Bris, Nadine; Felbeck, Horst; Gros, Olivier

2010-08-01

Archaea may be involved in global energy cycles, and are known for their ability to interact with eukaryotic species (sponges, corals and ascidians) or as archaeal-bacterial consortia. The recently proposed phylum Thaumarchaeota may represent the deepest branching lineage in the archaeal phylogeny emerging before the divergence between Euryarchaeota and Crenarchaeota. Here we report the first characterization of two marine thaumarchaeal species from shallow waters that consist of multiple giant cells. One species is coated with sulfur-oxidizing γ-Proteobacteria. These new uncultured thaumarchaeal species are able to live in the sulfide-rich environments of a tropical mangrove swamp, either on living tissues such as roots or on various kinds of materials such as stones, sunken woods, etc. These archaea and archaea/bacteria associations have been studied using light microscopy, transmission electron microscopy and scanning electron microscopy. Species identification of archaeons and the putative bacterial symbiont have been assessed by 16S small subunit ribosomal RNA analysis. The sulfur-oxidizing ability of the bacteria has been assessed by genetic investigation on alpha-subunit of the adenosine-5'-phosphosulfate reductase/oxidase's (AprA). Species identifications have been confirmed by fluorescence in situ hybridization using specific probes designed in this study. In this article, we describe two new giant archaeal species that form the biggest archaeal filaments ever observed. One of these species is covered by a specific biofilm of sulfur-oxidizing γ-Proteobacteria. This study highlights an unexpected morphological and genetic diversity of the phylum Thaumarchaeota. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

Persistent natural acidification drives major distribution shifts in marine benthic ecosystems

Science.gov (United States)

Linares, C.; Vidal, M.; Canals, M.; Kersting, D. K.; Amblas, D.; Aspillaga, E.; Cebrián, E.; Delgado-Huertas, A.; Díaz, D.; Garrabou, J.; Hereu, B.; Navarro, L.; Teixidó, N.; Ballesteros, E.

2015-01-01

Ocean acidification is receiving increasing attention because of its potential to affect marine ecosystems. Rare CO2 vents offer a unique opportunity to investigate the response of benthic ecosystems to acidification. However, the benthic habitats investigated so far are mainly found at very shallow water (less than or equal to 5 m depth) and therefore are not representative of the broad range of continental shelf habitats. Here, we show that a decrease from pH 8.1 to 7.9 observed in a CO2 vent system at 40 m depth leads to a dramatic shift in highly diverse and structurally complex habitats. Forests of the kelp Laminaria rodriguezii usually found at larger depths (greater than 65 m) replace the otherwise dominant habitats (i.e. coralligenous outcrops and rhodolith beds), which are mainly characterized by calcifying organisms. Only the aragonite-calcifying algae are able to survive in acidified waters, while high-magnesium-calcite organisms are almost completely absent. Although a long-term survey of the venting area would be necessary to fully understand the effects of the variability of pH and other carbonate parameters over the structure and functioning of the investigated mesophotic habitats, our results suggest that in addition of significant changes at species level, moderate ocean acidification may entail major shifts in the distribution and dominance of key benthic ecosystems at regional scale, which could have broad ecological and socio-economic implications. PMID:26511045

Floristic account of the marine benthic algae from Jarvis Island and Kingman Reef, Line Islands, Central Pacific

Directory of Open Access Journals (Sweden)

Vroom, P.S.

2012-05-01

Full Text Available The marine benthic algae from Jarvis Island and Kingman Reef were identified from collections obtained from the Whippoorwill Expedition in 1924, the Itasca Expedition in 1935, the U.S. Coast Guard Cutter Taney in 1938, the Smithsonian Institution’s Pacific Ocean Biological Survey Program in 1964 and the U.S. National Oceanic and Atmospheric Administration’s Reef Assessment and Monitoring Program (RAMP in 2000, 2001, 2002, 2004 and 2006. A total of 124 species, representing 8 Cyanobacteria (blue-green algae, 82 Rhodophyta (red algae, 6 Heterokontophyta (brown algae and 28 Chlorophyta (green algae, are reported from both islands. Seventy-nine and 95 species of marine benthic algae are recorded from Jarvis Island and Kingman Reef, respectively. Of the 124 species, 77 species or 62% (4 blue-green algae, 57 red algae, 2 brown algae and 14 green algae have never before been reported from the 11 remote reefs, atolls and low islands comprising the Line Islands in the Central Pacific.

Reorganization of a marine trophic network along an inshore-offshore gradient due to stronger pelagic-benthic coupling in coastal areas

Science.gov (United States)

Kopp, Dorothée; Lefebvre, Sébastien; Cachera, Marie; Villanueva, Maria Ching; Ernande, Bruno

2015-01-01

Recent theoretical considerations have highlighted the importance of the pelagic-benthic coupling in marine food webs. In continental shelf seas, it was hypothesized that the trophic network structure may change along an inshore-offshore gradient due to weakening of the pelagic-benthic coupling from coastal to offshore areas. We tested this assumption empirically using the eastern English Channel (EEC) as a case study. We sampled organisms from particulate organic matter to predatory fishes and used baseline-corrected carbon and nitrogen stable isotope ratios (δ13C and δ15N) to determine their trophic position. First, hierarchical clustering on δ13C and δ15N coupled to bootstrapping and estimates of the relative contribution of pelagic and benthic carbon sources to consumers' diet showed that, at mesoscale, the EEC food web forms a continuum of four trophic levels with trophic groups spread across a pelagic and a benthic trophic pathway. Second, based on the same methods, a discrete approach examined changes in the local food web structure across three depth strata in order to investigate the inshore-offshore gradient. It showed stronger pelagic-benthic coupling in shallow coastal areas mostly due to a reorganization of the upper consumers relative to the two trophic pathways, benthic carbon sources being available to pelagic consumers and, reciprocally, pelagic sources becoming accessible to benthic species. Third a continuous approach examined changes in the mean and variance of upper consumers' δ13C and δ15N with depth. It detected a significant decrease in δ13C variance and a significant increase in δ15N variance as depth increases. A theoretical two-source mixing model showed that an inshore-offshore decrease in the pelagic-benthic coupling was a sufficient condition to produce the δ13C variance pattern, thus supporting the conclusions of the discrete approach. These results suggest that environmental gradients such as the inshore-offshore one should

Marine chemistry, fish / shell-fish surveys, benthic organisms, and marine toxic substances and pollutants data from current meter and other instruments in the Gulf of Mexico from 1993-01-26 to 1994-06-13 (NODC Accession 9500088)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Marine chemistry, fish / shell-fish surveys, benthic organisms, and marine toxic substances and pollutants data were collected using current meter and other...

Modelling benthic oxygen consumption and benthic-pelagic coupling at a shallow station in the southern North Sea

NARCIS (Netherlands)

Provoost, P.; Braeckman, U.; Van Gansbeke, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J.; Vanaverbeke, J.

2013-01-01

A time-series of benthic oxygen consumption, water-column and sediment chlorophyll concentrations, and temperature in the southern North Sea was subjected to inverse modelling in order to study benthic-pelagic coupling in this coastal marine system. The application of a Markov Chain Monte Carlo

Nutrient reduction and climate change cause a potential shift from pelagic to benthic pathways in a eutrophic marine ecosystem

DEFF Research Database (Denmark)

Lindegren, Martin; Blenckner, T.; Stenseth, N.C.

2012-01-01

The degree to which marine ecosystems may support the pelagic or benthic food chain has been shown to vary across natural and anthropogenic gradients for e.g., in temperature and nutrient availability. Moreover, such external forcing may not only affect the flux of organic matter but could trigger...... variables across all trophic levels, we here propose a potential regime shift from pelagic to benthic regulatory pathways; a possible first sign of recovery from eutrophication likely triggered by drastic nutrient reductions (involving both nitrogen and phosphorus), in combination with climate...

Differences in composition of shallow-water marine benthic communities associated with two ophiolitic rock substrata

Science.gov (United States)

Bavestrello, Giorgio; Bo, Marzia; Betti, Federico; Canessa, Martina; Gaggero, Laura; Rindi, Fabio; Cattaneo-Vietti, Riccardo

2018-01-01

On marine rocky shores, several physical, chemical and biological processes operate to maintain the benthic assemblages' heterogeneity, but among the abiotic factors, the composition and texture of the rocky substrata have been only sporadically considered. However, biomineralogical studies have demonstrated an unsuspected ability of the benthic organisms to interact at different levels with rocky substrata. Therefore, the mineralogy of the substratum can affect the structure of benthic communities. To evaluate this hypothesis, the macrobenthic assemblages developed on two different ophiolitic rocks (serpentinites and metagabbros) in contact at a restricted stretch of the western Ligurian Riviera (western Mediterranean Sea), with identical environmental and climatic conditions, were analysed. Samplings were carried out at four bathymetric levels (+1m, 0m, -1m, and -3m respect to the mean sea level) and the analysis of the data evidenced differences in terms of species distribution and percent coverage. Algal communities growing on metagabbros were poorer in species richness and showed a much simpler structure when compared to the assemblages occurring on the serpentinites. The most widely distributed animal organism, the barnacle Chthamalus stellatus, was dominant on serpentinites, and virtually absent on metagabbros. Our results suggest a complex pattern of interactions between lithology and benthic organisms operating through processes of inhibition/facilitation related to the mineral properties of the substratum.

Bioaccumulation and Toxicity of Single-Walled Carbon Nanotubes to Benthic Organisms at the Base of the Marine Food Chain

Science.gov (United States)

As the use of single-walled carbon nanotubes (SWNTs) increases over time, so does the potential for environmental release. This research aimed to determine the toxicity, bioavailability, and bioaccumulation of SWNTs in marine benthic organisms at the base of the food chain. The t...

Seasonal variation in accumulation of persistent organic pollutants in an Arctic marine benthic food web

Energy Technology Data Exchange (ETDEWEB)

Evenset, A., E-mail: anita.evenset@akvaplan.niva.no [Akvaplan-niva. Fram Centre, Tromsø (Norway); University of Tromsø, The Arctic University of Norway, Tromsø (Norway); Hallanger, I.G. [University of Tromsø, The Arctic University of Norway, Tromsø (Norway); Tessmann, M. [Akvaplan-niva. Fram Centre, Tromsø (Norway); Institute for Hydrobiology and Fisheries Research, University of Hamburg (Germany); Warner, N. [Norwegian Institute for Air Research, Fram Centre, Tromsø (Norway); Ruus, A. [Norwegian Institute for Water Research, Oslo (Norway); Borgå, K. [Norwegian Institute for Water Research, Oslo (Norway); Department of Biosciences, P.O. Box 1066, Blindern 0316, Oslo (Norway); Gabrielsen, G.W. [Norwegian Polar Institute, Fram Centre, Tromsø (Norway); Christensen, G. [Akvaplan-niva. Fram Centre, Tromsø (Norway); Renaud, P.E. [Akvaplan-niva. Fram Centre, Tromsø (Norway); University Centre in Svalbard, Longyearbyen (Norway)

2016-01-15

The aim of the present study was to investigate seasonal variation in persistent organic pollutant (POP) concentrations, as well as food-web biomagnification, in an Arctic, benthic marine community. Macrozoobenthos, demersal fish and common eiders were collected both inside and outside of Kongsfjorden, Svalbard, during May, July and October 2007. The samples were analysed for a selection of legacy chlorinated POPs. Overall, low levels of POPs were measured in all samples. Although POP levels and accumulation patterns showed some seasonal variation, the magnitude and direction of change was not consistent among species. Overall, seasonality in bioaccumulation in benthic biota was less pronounced than in the pelagic system in Kongsfjorden. In addition, the results indicate that δ{sup 15}N is not a good predictor for POP-levels in benthic food chains. Other factors, such as feeding strategy (omnivory, necrophagy versus herbivory), degree of contact with the sediment, and a high dependence on particulate organic matter (POM), with low POP-levels and high δ{sup 15}N-values (due to bacterial isotope enrichment), seem to govern the uptake of the different POPs and result in loads deviating from what would be expected consulting the trophic position alone. - Highlights: • Seasonal variation in POP biomagnification was investigated in a benthic food web. • Levels of POPs are generally low in benthic species from Kongsfjorden, Svalbard. • POP-concentrations varied with season, but direction of change varied among taxa. • No POP-biomagnification, except for cis-nonachlor, was detected in this study. • δ{sup 15}N-values does not seem to be a good proxy for trophic level in macrozoobenthos.

Seasonal variation in accumulation of persistent organic pollutants in an Arctic marine benthic food web

International Nuclear Information System (INIS)

Evenset, A.; Hallanger, I.G.; Tessmann, M.; Warner, N.; Ruus, A.; Borgå, K.; Gabrielsen, G.W.; Christensen, G.; Renaud, P.E.

2016-01-01

The aim of the present study was to investigate seasonal variation in persistent organic pollutant (POP) concentrations, as well as food-web biomagnification, in an Arctic, benthic marine community. Macrozoobenthos, demersal fish and common eiders were collected both inside and outside of Kongsfjorden, Svalbard, during May, July and October 2007. The samples were analysed for a selection of legacy chlorinated POPs. Overall, low levels of POPs were measured in all samples. Although POP levels and accumulation patterns showed some seasonal variation, the magnitude and direction of change was not consistent among species. Overall, seasonality in bioaccumulation in benthic biota was less pronounced than in the pelagic system in Kongsfjorden. In addition, the results indicate that δ"1"5N is not a good predictor for POP-levels in benthic food chains. Other factors, such as feeding strategy (omnivory, necrophagy versus herbivory), degree of contact with the sediment, and a high dependence on particulate organic matter (POM), with low POP-levels and high δ"1"5N-values (due to bacterial isotope enrichment), seem to govern the uptake of the different POPs and result in loads deviating from what would be expected consulting the trophic position alone. - Highlights: • Seasonal variation in POP biomagnification was investigated in a benthic food web. • Levels of POPs are generally low in benthic species from Kongsfjorden, Svalbard. • POP-concentrations varied with season, but direction of change varied among taxa. • No POP-biomagnification, except for cis-nonachlor, was detected in this study. • δ"1"5N-values does not seem to be a good proxy for trophic level in macrozoobenthos.

CTD, marine invertebrate pathology, benthic organisms, and marine toxic substances and pollutants data collected using CTD casts and other instruments from SEA TRANSPORTER and other platforms in Gulf of Mexico from 1978-05-20 to 1979-01-15 (NODC Accession 8000022)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — CTD, marine invertebrate pathology, benthic organisms, and marine toxic substances and pollutants data were collected using CTD, net casts, and other instruments...

Transfer of radiocaesium from contaminated bottom sediments to marine organisms through benthic food chains in post-Fukushima and post-Chernobyl periods

Science.gov (United States)

Bezhenar, Roman; Jung, Kyung Tae; Maderich, Vladimir; Willemsen, Stefan; de With, Govert; Qiao, Fangli

2016-05-01

After the earthquake and tsunami on 11 March 2011 damaged the Fukushima Dai-ichi Nuclear Power Plant (FDNPP), an accidental release of a large amount of radioactive isotopes into both the air and the ocean occurred. Measurements provided by the Japanese agencies over the past 5 years show that elevated concentrations of 137Cs still remain in sediments, benthic organisms, and demersal fishes in the coastal zone around the FDNPP. These observations indicate that there are 137Cs transfer pathways from bottom sediments to the marine organisms. To describe the transfer quantitatively, the dynamic food chain biological uptake model of radionuclides (BURN) has been extended to include benthic marine organisms. The extended model takes into account both pelagic and benthic marine organisms grouped into several classes based on their trophic level and type of species: phytoplankton, zooplankton, and fishes (two types: piscivorous and non-piscivorous) for the pelagic food chain; deposit-feeding invertebrates, demersal fishes fed by benthic invertebrates, and bottom omnivorous predators for the benthic food chain; crustaceans, mollusks, and coastal predators feeding on both pelagic and benthic organisms. Bottom invertebrates ingest organic parts of bottom sediments with adsorbed radionuclides which then migrate up through the food chain. All organisms take radionuclides directly from water as well as food. The model was implemented into the compartment model POSEIDON-R and applied to the north-western Pacific for the period of 1945-2010, and then for the period of 2011-2020 to assess the radiological consequences of 137Cs released due to the FDNPP accident. The model simulations for activity concentrations of 137Cs in both pelagic and benthic organisms in the coastal area around the FDNPP agree well with measurements for the period of 2011-2015. The decrease constant in the fitted exponential function of simulated concentration for the deposit-feeding invertebrates (0.45 yr-1

Transfer of radiocaesium from contaminated bottom sediments to marine organisms through benthic food chains in post-Fukushima and post-Chernobyl periods

Energy Technology Data Exchange (ETDEWEB)

Bezhenar, Roman; Maderich, Vladimir [Institute of Mathematical Machine and System Problems, Kiev (Ukraine); Jung, Kyung Tae [Korea Institute of Ocean Science and Technology, Ansan (Korea, Republic of); Willemsen, Stefan; With, Govert de [NRG, Arnhem (Netherlands); Qiao, Fangli [First Institute of Oceanography, Qingdao (China)

2016-07-01

After the earthquake and tsunami on 11 March 2011 damaged the Fukushima Dai-ichi Nuclear Power Plant (FDNPP), an accidental release of a large amount of radioactive isotopes into both the air and the ocean occurred. Measurements provided by the Japanese agencies over the past 5 years show that elevated concentrations of {sup 137}Cs still remain in sediments, benthic organisms, and demersal fishes in the coastal zone around the FDNPP. These observations indicate that there are {sup 137}Cs transfer pathways from bottom sediments to the marine organisms. To describe the transfer quantitatively, the dynamic food chain biological uptake model of radionuclides (BURN) has been extended to include benthic marine organisms. The extended model takes into account both pelagic and benthic marine organisms grouped into several classes based on their trophic level and type of species: phytoplankton, zooplankton, and fishes (two types: piscivorous and non-piscivorous) for the pelagic food chain; deposit-feeding invertebrates, demersal fishes fed by benthic invertebrates, and bottom omnivorous predators for the benthic food chain; crustaceans, mollusks, and coastal predators feeding on both pelagic and benthic organisms. Bottom invertebrates ingest organic parts of bottom sediments with adsorbed radionuclides which then migrate up through the food chain. All organisms take radionuclides directly from water as well as food. The model was implemented into the compartment model POSEIDON-R and applied to the north-western Pacific for the period of 1945-2010, and then for the period of 2011-2020 to assess the radiological consequences of {sup 137}Cs released due to the FDNPP accident. The model simulations for activity concentrations of {sup 137}Cs in both pelagic and benthic organisms in the coastal area around the FDNPP agree well with measurements for the period of 2011-2015. The decrease constant in the fitted exponential function of simulated concentration for the deposit

Transfer of radiocaesium from contaminated bottom sediments to marine organisms through benthic food chains in post-Fukushima and post-Chernobyl periods

International Nuclear Information System (INIS)

Bezhenar, Roman; Maderich, Vladimir; Jung, Kyung Tae; Willemsen, Stefan; With, Govert de; Qiao, Fangli

2016-01-01

After the earthquake and tsunami on 11 March 2011 damaged the Fukushima Dai-ichi Nuclear Power Plant (FDNPP), an accidental release of a large amount of radioactive isotopes into both the air and the ocean occurred. Measurements provided by the Japanese agencies over the past 5 years show that elevated concentrations of "1"3"7Cs still remain in sediments, benthic organisms, and demersal fishes in the coastal zone around the FDNPP. These observations indicate that there are "1"3"7Cs transfer pathways from bottom sediments to the marine organisms. To describe the transfer quantitatively, the dynamic food chain biological uptake model of radionuclides (BURN) has been extended to include benthic marine organisms. The extended model takes into account both pelagic and benthic marine organisms grouped into several classes based on their trophic level and type of species: phytoplankton, zooplankton, and fishes (two types: piscivorous and non-piscivorous) for the pelagic food chain; deposit-feeding invertebrates, demersal fishes fed by benthic invertebrates, and bottom omnivorous predators for the benthic food chain; crustaceans, mollusks, and coastal predators feeding on both pelagic and benthic organisms. Bottom invertebrates ingest organic parts of bottom sediments with adsorbed radionuclides which then migrate up through the food chain. All organisms take radionuclides directly from water as well as food. The model was implemented into the compartment model POSEIDON-R and applied to the north-western Pacific for the period of 1945-2010, and then for the period of 2011-2020 to assess the radiological consequences of "1"3"7Cs released due to the FDNPP accident. The model simulations for activity concentrations of "1"3"7Cs in both pelagic and benthic organisms in the coastal area around the FDNPP agree well with measurements for the period of 2011-2015. The decrease constant in the fitted exponential function of simulated concentration for the deposit

Benthic marine debris, with an emphasis on fishery-related items, surrounding Kodiak Island, Alaska, 1994-1996

Science.gov (United States)

Hess, N.A.; Ribic, C.A.; Vining, I.

1999-01-01

Composition and abundance of benthic marine debris were investigated during three bottom trawl surveys in inlet and offshore locations surrounding Kodiak Island, Alaska, 1994-1996. Debris items were primarily plastic and metal regardless of trawl location. Plastic bait jars, fishing line, and crab pots were the most common fishery-related debris items and were encountered in large amounts in inlets (20-25 items km-2), but were less abundant outside of inlets (4.5-11 items km-2). Overall density of debris was also significantly greater in inlets than outside of inlets. Plastic debris densities in inlets ranged 22-31.5 items km-2, 7.8-18.8 items km-2 outside of inlets. Trawls in inlets contained almost as much metal debris as plastic debris. Density of metal debris ranged from 21.2 to 23.7 items km-2 in inlets, a maximum of 2.7 items km-2 outside of inlets. Inlets around the town of Kodiak had the highest densities of fishery-related and total benthic debris. Differences in benthic debris density between inlets and outside of inlets and differences by area may be due to differences in fishing activity and water circulation patterns. At the current reduced levels of fishing activity, however, yearly monitoring of benthic debris appears unnecessary. Copyright (C) 1999.

Benthic habitat and fish assemblage structure from shallow to mesophotic depths in a storm-impacted marine protected area

Science.gov (United States)

Abesamis, Rene A.; Langlois, Tim; Birt, Matthew; Thillainath, Emma; Bucol, Abner A.; Arceo, Hazel O.; Russ, Garry R.

2018-03-01

Baseline ecological studies of mesophotic coral ecosystems are lacking in the equatorial Indo-West Pacific region where coral reefs are highly threatened by anthropogenic and climate-induced disturbances. Here, we used baited remote underwater video to describe benthic habitat and fish assemblage structure from 10 to 80 m depth at Apo Island, a well-managed marine protected area in the Philippines. We conducted surveys 2 yr after two storms (in 2011 and 2012) caused severe damage to shallow coral communities within the no-take marine reserve (NTMR) of Apo Island, which led to declines in fish populations that had built up over three decades. We found that hard coral cover was restricted to the storm-impacted NTMR and a nearby fished area not impacted by storms. Benthic cover at mesophotic depths (> 30 m) was dominated by sand/rubble and rock (dead coral) with low cover of soft corals, sponges and macroalgae. Storm damage appeared to have reached the deepest limit of the fringing reef (40 m) and reduced variability in benthic structure within the NTMR. Species richness and/or abundance of most trophic groups of fish declined with increasing depth regardless of storm damage. There were differences in taxonomic and trophic structure and degree of targeting by fisheries between shallow and mesophotic fish assemblages. Threatened shark species and a fish species previously unreported in the Philippines were recorded at mesophotic depths. Our findings provide a first glimpse of the benthic and fish assemblage structure of Philippine coral reef ecosystems across a wide depth gradient. This work also underscores how a combination of limited coral reef development at mesophotic depths close to shallow reefs and severe habitat loss caused by storms would result in minimal depth refuge for reef fish populations.

Sessile and mobile components of a benthic ecosystem display mixed trends within a temperate marine reserve.

Science.gov (United States)

Howarth, Leigh M; Pickup, Sarah E; Evans, Lowri E; Cross, Tim J; Hawkins, Julie P; Roberts, Callum M; Stewart, Bryce D

2015-06-01

Despite recent efforts to increase the global coverage of marine protected areas (MPAs), studies investigating the effectiveness of marine protected areas within temperate waters remain scarce. Furthermore, out of the few studies published on MPAs in temperate waters, the majority focus on specific ecological or fishery components rather than investigating the ecosystem as a whole. This study therefore investigated the dynamics of both benthic communities and fish populations within a recently established, fully protected marine reserve in Lamlash Bay, Isle of Arran, United Kingdom, over a four year period. A combination of photo and diver surveys revealed live maerl (Phymatolithon calcareum), macroalgae, sponges, hydroids, feather stars and eyelash worms (Myxicola infundibulum) to be significantly more abundant within the marine reserve than on surrounding fishing grounds. Likewise, the overall composition of epifaunal communities in and outside the reserve was significantly different. Both results are consistent with the hypothesis that protecting areas from fishing can encourage seafloor habitats to recover. In addition, the greater abundance of complex habitats within the reserve appeared to providing nursery habitat for juvenile cod (Gadus morhua) and scallops (Pecten maximus and Aequipecten opercularis). In contrast, there was little difference in the abundance of mobile benthic fauna, such as crabs and starfish, between the reserve and outside. Similarly, the use of baited underwater video cameras revealed no difference in the abundance and size of fish between the reserve and outside. Limited recovery of these ecosystem components may be due to the relatively small size (2.67 km(2)) and young age of the reserve (<5 years), both of which might have limited the extent of any benefits afforded to mobile fauna and fish communities. Overall, this study provides evidence that fully protected marine reserves can encourage seafloor habitats to recover, which in

Nitrogen metabolism and kinetics of ammonia-oxidizing archaea.

Science.gov (United States)

Martens-Habbena, Willm; Stahl, David A

2011-01-01

The discovery of ammonia-oxidizing mesophilic and thermophilic Group I archaea changed the century-old paradigm that aerobic ammonia oxidation is solely mediated by two small clades of Beta- and Gammaproteobacteria. Group I archaea are extremely diverse and ubiquitous in marine and terrestrial environments, accounting for 20-30% of the microbial plankton in the global oceans. Recent studies indicated that many of these organisms carry putative ammonia monooxygenase genes and are more abundant than ammonia-oxidizing bacteria in most natural environments suggesting a potentially significant role in the nitrogen cycle. The isolation of Nitrosopumilus maritimus strain SCM1 provided the first direct evidence that Group I archaea indeed gain energy from ammonia oxidation. To characterize the physiology of this archaeal nitrifier, we developed a respirometry setup particularly suited for activity measurements in dilute microbial cultures with extremely low oxygen uptake rates. Here, we describe the setup and review the kinetic experiments conducted with N. maritimus and other nitrifying microorganisms. These experiments demonstrated that N. maritimus is adapted to grow on ammonia concentrations found in oligotrophic open ocean environments, far below the survival threshold of ammonia-oxidizing bacteria. The described setup and experimental procedures should facilitate physiological studies on other nitrifying archaea and oligotrophic microorganisms in general. Copyright © 2011 Elsevier Inc. All rights reserved.

Effect of the environment on horizontal gene transfer between bacteria and archaea.

Science.gov (United States)

Fuchsman, Clara A; Collins, Roy Eric; Rocap, Gabrielle; Brazelton, William J

2017-01-01

general, these transfers are from archaea that live in similar oxygen and temperature conditions as the bacteria that receive the genes. Potential hotspots of horizontal gene transfer between archaea and bacteria include hot springs, marine sediments, and oil wells. Cold spots for horizontal transfer included dilute, aerobic, mesophilic environments such as marine and freshwater surface waters.

Effect of the environment on horizontal gene transfer between bacteria and archaea

Directory of Open Access Journals (Sweden)

Clara A. Fuchsman

2017-09-01

genes from the archaea to the bacteria. In general, these transfers are from archaea that live in similar oxygen and temperature conditions as the bacteria that receive the genes. Potential hotspots of horizontal gene transfer between archaea and bacteria include hot springs, marine sediments, and oil wells. Cold spots for horizontal transfer included dilute, aerobic, mesophilic environments such as marine and freshwater surface waters.

Development of a chronic sediment toxicity test for marine benthic amphipods

International Nuclear Information System (INIS)

DeWitt, T.H.; Redmond, M.S.; Sewall, J.E.; Swartz, R.C.

1992-12-01

The results of the research effort culminated in the development of a research method for assessing the chronic toxicity of contaminated marine and estuarine sediments using the benthic amphipod, Leptocheirus plumulosus. The first chapter describes the efforts at collecting, handling, and culturing four estuarine amphipods from Chesapeake Bay, including L. plumulosus. This chapter includes maps of the distribution and abundance of these amphipods within Chesapeake Bay and methodologies for establishing cultures of amphipods which could be readily adopted by other laboratories. The second chapter reports the development of acute and chronic sediment toxicity test methods for L. plumulosus, its sensitivity to non-contaminant environmental variables, cadmium, two polynuclear aromatic hydrocarbons, and contaminated sediment from Baltimore Harbor, MD. The third chapter reports the authors attempts to develop a chronic sediment toxicity test with Ampelisca abdita

Marine benthic faunal successional stages and related sedimentary activity

Directory of Open Access Journals (Sweden)

Rutger Rosenberg

2001-12-01

Full Text Available This paper is a brief review of successional stages and activity of benthic soft-bottom communities. Benthic communities was first described by Petersen in the 1910s and further developed by Molander, Thorson and Margalef. Successional stages of benthic communities chance in a predictable way in relation to environmental disturbance and food availability. Food supply to the bottom can occur as a vertical flux, but transport through lateral advection is more important in some areas. While at the bottom, the infauna processes the food in many different ways, and the feeding modes can be categorised into more than 20 functional groups, but fewer are present in brackish water. This categorisation is based on animal mobility and where and how they ingest the food. Animal activity in the sediment, bioturbation, has a significant effect on redox conditions and diagenetic processes. Structures in the sediment due to infaunal presence and activity can be observed in situ by sediment profile imaging, and the biogenic structures and redox conditions can be parameterised and have been shown to correlate to benthic community successional stages. The largest threat to benthic faunal biodiversity is the spread of near-bottom oxygen deficiency in many enclosed are stratified coastal areas.

Assessing Sub-Lethal Impacts of Petroleum Compounds on Marine Benthic Systems

Energy Technology Data Exchange (ETDEWEB)

Lindgren, J. Fredrik

2012-07-01

Petroleum and its different distillates commonly end up in the marine environment. One source of these additions is discharges originating from shipping activities; accidents, ship wrecks, operational spills etc. Depending on several different factors that govern the fate of petroleum released into the marine environment the effects of the discharge will differ, from acute toxic to long term sub-lethal effects. While effects on biota from large spills have thoroughly been investigated in the past long term sub-lethal effects are somewhat less examined. Therefore the objective of this thesis has been to develop and apply a method to analyze what effects low concentrations of petroleum, which often ends up in marine sediments, have on benthic sediment biota. Ecotoxicological endpoints that were evaluated were density changes of meiofauna and variations in the microbial community function, measured as inorganic nutrient fluxes over the sediment-water interface the potential to perform a metabolic process. These types of organisms are two important key players in marine benthic sedimentary habitats, performing ecosystem services such as degradation of organic matter, recycling of nutrients and various pollutants and they constitute a carbon link to higher trophic levels. As manual classification of meiofauna is very time-consuming process including an extended learning process for the taxonomist, this thesis is in its first part focused at the field of automatic classification. To classify meiofaunal communities a novel technique was developed where the image analysis software ZooImage was adapted to automatically classify higher taxonomic taxa of meiofauna, with successful results. The technique was evaluated by classifying meiofaunal communities from five different depths in the Gullmar Fjord, Sweden. The accuracy of the analyses was tested using ZooImage's internal 10-fold cross-validation method, and by comparing digitalized samples from the different sites

Limited differences in fish and benthic communities and possible cascading effects inside and outside a protected marine area in Sagres (SW Portugal).

Science.gov (United States)

Gil Fernández, C; Paulo, D; Serrão, E A; Engelen, A H

2016-03-01

Marine protected areas (MPAs) are a relatively recent fisheries management and conservation tool for conservation of marine ecosystems and serve as experimental grounds to assess trophic cascade effects in areas were fishing is restricted to some extent. A series of descriptive field studies were performed to assess fish and benthic communities between two areas within a newly established MPA in SW Portugal. We characterized benthic macroalgal composition and determined the size, density and biomass of the main benthic predatory and herbivorous fish species as well as the main benthic herbivorous invertebrates to assess indications of top-down control on the phytobenthic assemblages. Fish species were identical inside and outside the MPA, in both cases Sarpa salpa was the most abundant fish herbivore and Diplodus spp. accounted for the great majority of the benthic predators. However, size and biomass of D. spp. were higher inside than outside the MPA. The main herbivorous invertebrate was the sea urchin Paracentrotus lividus, which was smaller and predominantly showing a crevice-dwelling behaviour in the MPA. In addition, P. lividus size frequency distribution showed a unimodal pattern outside and a bimodal pattern inside the MPA. We found significant differences in the algal assemblages between inside and outside the MPA, with higher abundance of turf and foliose algae inside, and articulated calcareous and corticated macrophytes outside the MPA, but no differences in the invasive Asparagopsis spp. The obtained results show differences in predatory fish and benthic community structure, but not in species richness, inside and outside the MPA. We hypothesize these differences lead to variation in species interactions: directly through predation and indirectly via affecting sea urchins behavioural patterns, predators might drive changes in macroalgal assemblages via trophic cascade in the study area. However due to non-biological differences between the two areas it

Flow enhances photosynthesis in marine benthic autotrophs by increasing the efflux of oxygen from the organism to the water.

Science.gov (United States)

Mass, Tali; Genin, Amatzia; Shavit, Uri; Grinstein, Mor; Tchernov, Dan

2010-02-09

Worldwide, many marine coastal habitats are facing rapid deterioration due in part to human-driven changes in habitat characteristics, including changes in flow patterns, a factor known to greatly affect primary production in corals, algae, and seagrasses. The effect of flow traditionally is attributed to enhanced influx of nutrients and dissolved inorganic carbon (DIC) across the benthic boundary layer from the water to the organism however, here we report that the organism's photosynthetic response to changes in the flow is nearly instantaneous, and that neither nutrients nor DIC limits this rapid response. Using microelectrodes, dual-pulse amplitude-modulated fluorometry, particle image velocimetry, and real time mass-spectrometry with the common scleractinian coral Favia veroni, the alga Gracilaria cornea, and the seagrass Halophila stipulacea, we show that this augmented photosynthesis is due to flow-driven enhancement of oxygen efflux from the organism to the water, which increases the affinity of the RuBisCO to CO(2). No augmentation of photosynthesis was found in the absence of flow or when flow occurred, but the ambient concentration of oxygen was artificially elevated. We suggest that water motion should be considered a fundamental factor, equivalent to light and nutrients, in determining photosynthesis rates in marine benthic autotrophs.

Benthic ecological mapping of the Ayeyarwady delta shelf off Myanmar, using foraminiferal assemblages

Digital Repository Service at National Institute of Oceanography (India)

Panchang, R.; Nigam, R.

Information on benthic ecologies is a prerequisite to evaluate marine resources, their management and monitoring the impact arising from their exploitation. In the present study, benthic foraminiferal distributions from 124 surface sediment samples...

Human exploitation and benthic community structure on a tropical intertidal mudflat

NARCIS (Netherlands)

Boer, de W.F.; Prins, H.H.T.

2002-01-01

Human exploitation of intertidal marine invertebrates is known to alter benthic community structure. This study describes the impact that harvesting by women and children has on the intertidal community structure of the mudflats of the Saco on Inhaca Island, Mozambique, by comparing the benthic

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

DEFF Research Database (Denmark)

Frigaard, Niels-Ulrik; Martinez, Asuncion; Mincer, Tracy J

2006-01-01

Planktonic Bacteria, Archaea and Eukarya reside and compete in the ocean's photic zone under the pervasive influence of light. Bacteria in this environment were recently shown to contain photoproteins called proteorhodopsins, thought to contribute to cellular energy metabolism by catalysing light...... phylogenetic distribution of proteorhodopsins reflects their significant light-dependent fitness contributions, which drive the photoprotein's lateral acquisition and retention, but constrain its dispersal to the photic zone....

Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor

Science.gov (United States)

May, Megan K.; Kevorkian, Richard T.; Steen, Andrew D.

2013-01-01

There is no universally accepted method to quantify bacteria and archaea in seawater and marine sediments, and different methods have produced conflicting results with the same samples. To identify best practices, we compiled data from 65 studies, plus our own measurements, in which bacteria and archaea were quantified with fluorescent in situ hybridization (FISH), catalyzed reporter deposition FISH (CARD-FISH), polyribonucleotide FISH, or quantitative PCR (qPCR). To estimate efficiency, we defined “yield” to be the sum of bacteria and archaea counted by these techniques divided by the total number of cells. In seawater, the yield was high (median, 71%) and was similar for FISH, CARD-FISH, and polyribonucleotide FISH. In sediments, only measurements by CARD-FISH in which archaeal cells were permeabilized with proteinase K showed high yields (median, 84%). Therefore, the majority of cells in both environments appear to be alive, since they contain intact ribosomes. In sediments, the sum of bacterial and archaeal 16S rRNA gene qPCR counts was not closely related to cell counts, even after accounting for variations in copy numbers per genome. However, qPCR measurements were precise relative to other qPCR measurements made on the same samples. qPCR is therefore a reliable relative quantification method. Inconsistent results for the relative abundance of bacteria versus archaea in deep subsurface sediments were resolved by the removal of CARD-FISH measurements in which lysozyme was used to permeabilize archaeal cells and qPCR measurements which used ARCH516 as an archaeal primer or TaqMan probe. Data from best-practice methods showed that archaea and bacteria decreased as the depth in seawater and marine sediments increased, although archaea decreased more slowly. PMID:24096423

Benthic carbonate factories of the Phanerozoic

NARCIS (Netherlands)

Schlager, W.

2003-01-01

Marine carbonate precipitation occurs in three basic modes: abiotic (or quasi-abiotic), biotically induced, and biotically controlled. On a geologic scale, these precipitation modes combine to form three carbonate production systems, or "factories" in the benthic environment: (1) tropical

Shallow-water Benthic Habitats in Jobos Bay

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of Jobos Bay, Puerto Rico were mapped and characterized using visual interpretation...

The Impact of Global Warming and Anoxia on Marine Benthic Community Dynamics: an Example from the Toarcian (Early Jurassic)

Science.gov (United States)

Danise, Silvia; Twitchett, Richard J.; Little, Crispin T. S.; Clémence, Marie-Emilie

2013-01-01

The Pliensbachian-Toarcian (Early Jurassic) fossil record is an archive of natural data of benthic community response to global warming and marine long-term hypoxia and anoxia. In the early Toarcian mean temperatures increased by the same order of magnitude as that predicted for the near future; laminated, organic-rich, black shales were deposited in many shallow water epicontinental basins; and a biotic crisis occurred in the marine realm, with the extinction of approximately 5% of families and 26% of genera. High-resolution quantitative abundance data of benthic invertebrates were collected from the Cleveland Basin (North Yorkshire, UK), and analysed with multivariate statistical methods to detect how the fauna responded to environmental changes during the early Toarcian. Twelve biofacies were identified. Their changes through time closely resemble the pattern of faunal degradation and recovery observed in modern habitats affected by anoxia. All four successional stages of community structure recorded in modern studies are recognised in the fossil data (i.e. Stage III: climax; II: transitional; I: pioneer; 0: highly disturbed). Two main faunal turnover events occurred: (i) at the onset of anoxia, with the extinction of most benthic species and the survival of a few adapted to thrive in low-oxygen conditions (Stages I to 0) and (ii) in the recovery, when newly evolved species colonized the re-oxygenated soft sediments and the path of recovery did not retrace of pattern of ecological degradation (Stages I to II). The ordination of samples coupled with sedimentological and palaeotemperature proxy data indicate that the onset of anoxia and the extinction horizon coincide with both a rise in temperature and sea level. Our study of how faunal associations co-vary with long and short term sea level and temperature changes has implications for predicting the long-term effects of “dead zones” in modern oceans. PMID:23457537

Benthic plastic debris in marine and fresh water environments.

Science.gov (United States)

Corcoran, Patricia L

2015-08-01

This review provides a discussion of the published literature concerning benthic plastic debris in ocean, sea, lake, estuary and river bottoms throughout the world. Although numerous investigations of shoreline, surface and near-surface plastic debris provide important information on plastic types, distribution, accumulation, and degradation, studies of submerged plastic debris have been sporadic in the past and have become more prominent only recently. The distribution of benthic debris is controlled mainly by combinations of urban proximity and its association with fishing-related activities, geomorphology, hydrological conditions, and river input. High density plastics, biofouled products, polymers with mineral fillers or adsorbed minerals, and plastic-metal composites all have the potential to sink. Once deposited on the bottoms of water basins and channels, plastics are shielded from UV light, thus slowing the degradation process significantly. Investigations of the interactions between benthic plastic debris and bottom-dwelling organisms will help shed light on the potential dangers of submerged plastic litter.

Potential impact of global climate change on benthic deep-sea microbes.

Science.gov (United States)

Danovaro, Roberto; Corinaldesi, Cinzia; Dell'Anno, Antonio; Rastelli, Eugenio

2017-12-15

Benthic deep-sea environments are the largest ecosystem on Earth, covering ∼65% of the Earth surface. Microbes inhabiting this huge biome at all water depths represent the most abundant biological components and a relevant portion of the biomass of the biosphere, and play a crucial role in global biogeochemical cycles. Increasing evidence suggests that global climate changes are affecting also deep-sea ecosystems, both directly (causing shifts in bottom-water temperature, oxygen concentration and pH) and indirectly (through changes in surface oceans' productivity and in the consequent export of organic matter to the seafloor). However, the responses of the benthic deep-sea biota to such shifts remain largely unknown. This applies particularly to deep-sea microbes, which include bacteria, archaea, microeukaryotes and their viruses. Understanding the potential impacts of global change on the benthic deep-sea microbial assemblages and the consequences on the functioning of the ocean interior is a priority to better forecast the potential consequences at global scale. Here we explore the potential changes in the benthic deep-sea microbiology expected in the coming decades using case studies on specific systems used as test models. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

History of benthic research in the English Channel: From general patterns of communities to habitat mosaic description

Science.gov (United States)

Dauvin, Jean-Claude

2015-06-01

Benthic studies in the English Channel (EC), a shallow megatidal and epicontinental sea, began in the 1960s and 1970s with the work of teams led by Norman Holme (UK) and Louis Cabioch (F). During this period, benthic sampling was mainly qualitative, i.e. using a device such as the 'Rallier du Baty' dredge in the case of the French team and a modified anchor dredge in the case of the British team. Studies were focused on acquiring knowledge of the main distributions of benthic communities and species. Surveys on the scale of the whole EC led to the recognition of general features and two main patterns were identified: 1) the role of hydrodynamics on the spatial distribution of sediment, benthic species and communities; 2) the presence of a west-east climatic gradient of faunal impoverishment. Benthic studies in the 1980s-1990s were focused on the beginning of the implementation of long-term survey at a limited number of sites to identify seasonal and multi-annual changes. In the first decade of the 2000s, the implementation of the European Water Framework Directive and the Marine Strategy Framework Directive to define the Ecological Quality Status of marine environments increased the need to acquire better information of the structure and functioning of benthic communities, since benthic species and habitats were recognised as good indicators of human pressure on marine ecosystems. Faced with the increase of human maritime activities, the appearance of invasive species and the need to preserve sensitive marine habitats, benthic studies have been focused on developing a 'toolkit' to help in the decision-making and planning for both sound governance and sustainable management of marine resources and human activities in the English Channel. Multidisciplinary approaches were used to differentiate habitats in a more precise detail. Both indirect (side-scan sonar, ROV) and direct (grab sampling with benthos identification and grain-size analyses) approaches were used and

Origin of marine planktonic cyanobacteria.

Science.gov (United States)

Sánchez-Baracaldo, Patricia

2015-12-01

Marine planktonic cyanobacteria contributed to the widespread oxygenation of the oceans towards the end of the Pre-Cambrian and their evolutionary origin represents a key transition in the geochemical evolution of the Earth surface. Little is known, however, about the evolutionary events that led to the appearance of marine planktonic cyanobacteria. I present here phylogenomic (135 proteins and two ribosomal RNAs), Bayesian relaxed molecular clock (18 proteins, SSU and LSU) and Bayesian stochastic character mapping analyses from 131 cyanobacteria genomes with the aim to unravel key evolutionary steps involved in the origin of marine planktonic cyanobacteria. While filamentous cell types evolved early on at around 2,600-2,300 Mya and likely dominated microbial mats in benthic environments for most of the Proterozoic (2,500-542 Mya), marine planktonic cyanobacteria evolved towards the end of the Proterozoic and early Phanerozoic. Crown groups of modern terrestrial and/or benthic coastal cyanobacteria appeared during the late Paleoproterozoic to early Mesoproterozoic. Decrease in cell diameter and loss of filamentous forms contributed to the evolution of unicellular planktonic lineages during the middle of the Mesoproterozoic (1,600-1,000 Mya) in freshwater environments. This study shows that marine planktonic cyanobacteria evolved from benthic marine and some diverged from freshwater ancestors during the Neoproterozoic (1,000-542 Mya).

Ether lipids of planktonic archae in the marine water column

NARCIS (Netherlands)

Sinninghe Damsté, J.S.; Hoefs, M.J.L.; Schouten, S.; King, L.L.; Wakeham, S.G.; Leeuw, J.W. de

1997-01-01

Acyclic and cyclic biphytanes derived from the membrane ether lipids of archaea were found in water column particulate and sedimentary organic matter from several oxic and anoxic marine environments. Compound-specific isotope analyses of the carbon skeletons suggest that planktonic archaea utilize

Respiratory quinones in Archaea: phylogenetic distribution and application as biomarkers in the marine environment.

Science.gov (United States)

Elling, Felix J; Becker, Kevin W; Könneke, Martin; Schröder, Jan M; Kellermann, Matthias Y; Thomm, Michael; Hinrichs, Kai-Uwe

2016-02-01

The distribution of respiratory quinone electron carriers among cultivated organisms provides clues on both the taxonomy of their producers and the redox processes these are mediating. Our study of the quinone inventories of 25 archaeal species belonging to the phyla Eury-, Cren- and Thaumarchaeota facilitates their use as chemotaxonomic markers for ecologically important archaeal clades. Saturated and monounsaturated menaquinones with six isoprenoid units forming the alkyl chain may serve as chemotaxonomic markers for Thaumarchaeota. Other diagnostic biomarkers are thiophene-bearing quinones for Sulfolobales and methanophenazines as functional quinone analogues of the Methanosarcinales. The ubiquity of saturated menaquinones in the Archaea in comparison to Bacteria suggests that these compounds may represent an ancestral and diagnostic feature of the Archaea. Overlap between quinone compositions of distinct thermophilic and halophilic archaea and bacteria may indicate lateral gene transfer. The biomarker potential of thaumarchaeal quinones was exemplarily demonstrated on a water column profile of the Black Sea. Both, thaumarchaeal quinones and membrane lipids showed similar distributions with maxima at the chemocline. Quinone distributions indicate that Thaumarchaeota dominate respiratory activity at a narrow interval in the chemocline, while they contribute only 9% to the microbial biomass at this depth, as determined by membrane lipid analysis. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Shallow-Water Benthic Habitats of Southwest Puerto Rico

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of two areas in Southwest Puerto Rico (PR), including the Guanica Bay/La Parguera...

Survey of the marine benthic infauna collected from the United States radioactive waste disposal sites off the Farallon Islands, California. Final report

International Nuclear Information System (INIS)

Reish, D.J.

1983-01-01

Benthic biological samples were taken in 1977 from the vicinity of the Farallon Islands radioactive waste disposal sites for characterization of the infaunal macroinvertebrates and foraminifera. A total of 120 invertebrate species were collected, of which 75 species (63 percent) were polychaetes. Forty-three of these polychaete species have not previously been reported from depths greater than 1000m. A total of 1044 macroinvertebrate specimens were collected of which 54 percent were polychates. Only the nematods were present at all six benthic stations, but the community structure was dominated by the polychaetes Tauberia gracilis, Allia pulchra, Chaetozone setosa, and Cossura candida. Living and dead foraminifera were reported. The possible role of polychaetes in bioturbation and in the marine food chain is briefly discussed with respect to the various polychaete feeding mechanisms

Deposition and benthic mineralization of organic carbon

DEFF Research Database (Denmark)

Nordi, Gunnvor A.; Glud, Ronnie N.; Simonsen, Knud

2018-01-01

Seasonal variations in sedimentation and benthic mineralization of organic carbon (OC) were investigated in a Faroese fjord. Deposited particulate organic carbon (POC) was mainly of marine origin, with terrestrial material only accounting for b1%. On an annual basis the POC export fromthe euphotic...

Ecology of intertidal benthic algae of Northern Karnataka coast

Digital Repository Service at National Institute of Oceanography (India)

Untawale, A.G.; Reddy, C.R.K.; Deshmukhe, G.V.

The intertidal benthic marine algal flora has been studied for distribution, phenology, biomass and zonation along with the environmental conditions. About 65 species belonging to 42 genera of Chlorophyta, Phaeophyta have been recorded. Rhodophyta...

Production of oceanic nitrous oxide by ammonia-oxidizing archaea

Directory of Open Access Journals (Sweden)

C. R. Löscher

2012-07-01

Full Text Available The recent finding that microbial ammonia oxidation in the ocean is performed by archaea to a greater extent than by bacteria has drastically changed the view on oceanic nitrification. The numerical dominance of archaeal ammonia-oxidizers (AOA over their bacterial counterparts (AOB in large parts of the ocean leads to the hypothesis that AOA rather than AOB could be the key organisms for the oceanic production of the strong greenhouse gas nitrous oxide (N₂O that occurs as a by-product of nitrification. Very recently, enrichment cultures of marine ammonia-oxidizing archaea have been reported to produce N₂O.

Here, we demonstrate that archaeal ammonia monooxygenase genes (amoA were detectable throughout the water column of the eastern tropical North Atlantic (ETNA and eastern tropical South Pacific (ETSP Oceans. Particularly in the ETNA, comparable patterns of abundance and expression of archaeal amoA genes and N₂O co-occurred in the oxygen minimum, whereas the abundances of bacterial amoA genes were negligible. Moreover, selective inhibition of archaea in seawater incubations from the ETNA decreased the N₂O production significantly. In studies with the only cultivated marine archaeal ammonia-oxidizer Nitrosopumilus maritimus SCM1, we provide the first direct evidence for N₂O production in a pure culture of AOA, excluding the involvement of other microorganisms as possibly present in enrichments. N. maritimus showed high N₂O production rates under low oxygen concentrations comparable to concentrations existing in the oxycline of the ETNA, whereas the N₂O production from two AOB cultures was comparably low under similar conditions. Based on our findings, we hypothesize that the production of N₂O in tropical ocean areas results mainly from archaeal nitrification and will be affected by the predicted decrease in dissolved

Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaea.

Science.gov (United States)

Zhu, Chun; Wakeham, Stuart G; Elling, Felix J; Basse, Andreas; Mollenhauer, Gesine; Versteegh, Gerard J M; Könneke, Martin; Hinrichs, Kai-Uwe

2016-12-01

Membrane lipids of marine planktonic archaea have provided unique insights into archaeal ecology and paleoceanography. However, past studies of archaeal lipids in suspended particulate matter (SPM) and sediments mainly focused on a small class of fully saturated glycerol dibiphytanyl glycerol tetraether (GDGT) homologues identified decades ago. The apparent low structural diversity of GDGTs is in strong contrast to the high diversity of metabolism and taxonomy among planktonic archaea. Furthermore, adaptation of archaeal lipids in the deep ocean remains poorly constrained. We report the archaeal lipidome in SPM from diverse oceanic regimes. We extend the known inventory of planktonic archaeal lipids to include numerous unsaturated archaeal ether lipids (uns-AELs). We further reveal (i) different thermal regulations and polar headgroup compositions of membrane lipids between the epipelagic (≤ 100 m) and deep (>100 m) populations of archaea, (ii) stratification of unsaturated GDGTs with varying redox conditions, and (iii) enrichment of tetra-unsaturated archaeol and fully saturated GDGTs in epipelagic and deep oxygenated waters, respectively. Such stratified lipid patterns are consistent with the typical distribution of archaeal phylotypes in marine environments. We, thus, provide an ecological context for GDGT-based paleoclimatology and bring about the potential use of uns-AELs as biomarkers for planktonic Euryarchaeota. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

The importance of benthic-pelagic coupling for marine ecosystem functioning in a changing world

DEFF Research Database (Denmark)

Griffiths, Jennifer R.; Kadin, Martina; Nascimento, Francisco J. A.

2017-01-01

and function is strongly affected by anthropogenic pressures, however there are large gaps in our understanding of the responses of inorganic nutrient and organic matter fluxes between benthic habitats and the water column. We illustrate the varied nature of physical and biological benthic-pelagic coupling...... processes and their potential sensitivity to three anthropogenic pressures - climate change, nutrient loading, and fishing - using the Baltic Sea as a case study, and summarize current knowledge on the exchange of inorganic nutrients and organic material between habitats. Traditionally measured benthic......Benthic-pelagic coupling is manifested as the exchange of energy, mass, or nutrients between benthic and pelagic habitats. It plays a prominent role in aquatic ecosystems and it is crucial to functions from nutrient cycling to energy transfer in food webs. Coastal and estuarine ecosystem structure...

Viruses manipulate the marine environment.

Science.gov (United States)

Rohwer, Forest; Thurber, Rebecca Vega

2009-05-14

Marine viruses affect Bacteria, Archaea and eukaryotic organisms and are major components of the marine food web. Most studies have focused on their role as predators and parasites, but many of the interactions between marine viruses and their hosts are much more complicated. A series of recent studies has shown that viruses have the ability to manipulate the life histories and evolution of their hosts in remarkable ways, challenging our understanding of this almost invisible world.

Does proximity to urban centres affect the dietary regime of marine benthic filter feeders?

Science.gov (United States)

Puccinelli, Eleonora; Noyon, Margaux; McQuaid, Christopher D.

2016-02-01

Threats to marine ecosystems include habitat destruction and degradation of water quality, resulting from land- and ocean-based human activities. Anthropogenic input causing modification of water quality, can affect primary productivity and thus food availability and quality for higher trophic levels. This is especially important for sedentary benthic intertidal communities, which rely on local food availability. We investigated the effect of urbanization on the dietary regime of four species of intertidal filter feeders (three barnacles and one mussel) at sites close to high-density cities and at sites far from heavily urbanized areas using fatty acid and stable isotope techniques. δ15N was significantly higher at urbanized sites compared to their corresponding control sites for all species with few exceptions, while no effect on δ13C was recorded. Barnacle fatty acid profiles were not affected by cities, while mussels from sites close to cities had fatty acid signatures with a higher proportion of polyunsaturated fatty acids (PUFA). We suggest that the enrichment in δ15N at urbanised sites reflects the influence of anthropogenically derived nitrogen directly linked to wastewater input from domestic and industrial sewage. Linked to this, the high proportion of PUFA in mussels at urbanized sites may reflect the influence of increased nitrogen concentrations on primary production and enhanced growth of large phytoplankton cells. The results indicate that anthropogenic effects can strongly influence the diets of benthic organisms, but these effects differ among taxa. Changes in the diet of such habitat forming species can affect their fitness and survival with potential effects on the populations associated with them.

Bathymetric preference of four major genera of rectilinear benthic ...

Indian Academy of Sciences (India)

(OMZ), both shallow marine (50–60 m water depth) and intermediate to deep water (150–1500 m water depth) ... depth differentiation among four rectilinear benthic foraminiferal genera presents the basic data for ..... in processing the samples.

St. John Benthic Habitat Mapping - Moderate Depth Ground Validation Sites

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitats of the moderate-depth marine environment in and around the Virgin Islands Coral Reef National Monument were mapped using a combination of...

Benthic organisms and marine toxic substances and pollutants collected using net and sediment samplers from the MT MITCHELL and other platforms from 22 May 1974 to 27 May 1974 (NODC Accession 7800886)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic organisms and marine toxic substances and pollutants were collected using sediment sampler and net casts in the coastal waters of the East coast of US. Data...

Benthic organism and marine toxic substances and pollutants collected using net and sediment sampler casts from NOAA Ship RESEARCHER in Gulf of Mexico from 1979-07-23 to 1980-12-13 (NODC Accession 8200103)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic organism and marine toxic substances and pollutants were collected using net, sediment sampler, and other instruments from NOAA Ship RESEARCHER and other...

Baseline assessment of the benthic communities of the Flower Garden Banks

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The work developed baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys employed diving,...

A study of radionuclide transfer between invertebrates and their marine sedimentary environment

International Nuclear Information System (INIS)

Amiard-Triquet, Claude.

1975-11-01

Exchanges between sediment and marine organisms were studied in some benthic marine invertebrates, especially Arenicola marina L. (an Annelid). Experiments were carried out on the transfer of 60 Co, 137 Cs and accessorily 59 Fe and 144 Ce. Water was the chief vector for benthic marine invertebrates. These invertebrates seemed to act mainly in sedimentary areas on the redistribution of adsorbed radionuclides within the sediment. Radioactive contamination of the invertebrates was affected by various physiological or ecological factors. Benthic marine invertebrates were then studied as links in food chains. The transfer of 60 Co was studied in three food chains or fractions of food chains. The procedure allowed interesting observations from the health protection point of view and more fundamental investigations on cobalt metabolism (regulation, excretion) in a mollusc, a crustacea and a teleost [fr

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

Science.gov (United States)

Eich, Andreas; Mildenberger, Tobias; Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition

Biofilm and Diatom Succession on Polyethylene (PE and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

Directory of Open Access Journals (Sweden)

Andreas Eich

Full Text Available The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth and a pelagic habitat (3 m water depth to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, and Marine Debris Sightings of the Marianas since 2014

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, and Marine Debris Sightings of American Samoa in 2015

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Benthic fluxes in a tropical estuary and their role in the ecosystem

Digital Repository Service at National Institute of Oceanography (India)

Pratihary, A.K.; Naqvi, S.W.A.; Naik, H.; Thorat, B.R.; Narvenkar, G.; Manjunatha, B.R.; Rao, V.P.

in the Estuary. Based on these observations we hypothesize that it is mainly benthic NH 4 + efflux that sustains high estuarine productivity in the NO 3 - depleted dry season. Keywords: Nutrients; Primary production; Denitrification; Bioturbation; Benthic..., nearshore and continental shelves occupy just about 10 % of the global oceanic area, between 30-50 % of the marine primary production occurs in these regions (Romankevich, 1984; Walsh, 1991) which also sustains about 90 % of the fisheries resource. Coastal...

Accumulation of phosphorus in coastal marine sediments: relationship to benthic and diffusive fluxes

Directory of Open Access Journals (Sweden)

Rocio Ponce

2010-11-01

Full Text Available Sedimentary phosphorus was characterized in sediment cores from 3 coastal ecosystems of the Gulf of Cadiz. High spatial variability was observed in total phosphorus (from 445 to 20291 μg g.sed-1 and in the other phosphorus phases studied. This variability correlates with the proximity of the 10 sampling stations to sources of urban and/or industrial effluent in the zone. The benthic and diffusive fluxes were measured concurrently with sediment collection at these stations. The measured values of benthic fluxes range between –14 and 6 mmol m-2 d-1. Generally, stations that showed increased interstitial phosphate concentrations with increasing depth were characterized by positive values in phosphate benthic fluxes and by high percentages of reactive forms of sedimentary phosphorus. Negative benthic fluxes were associated with stations receiving more anthropogenic matter, which showed progressively decreasing phosphate concentrations in the interstitial water with depth. In these anthropogenic areas, the non-reactive forms of phosphorus (those associated with ferric oxyhydroxide and authigenic carbonate fluorapatite are abundant, and reach values exceeding 75% of total phosphorus in sediment.

Thermophilic archaea activate butane via alkyl-coenzyme M formation.

Science.gov (United States)

Laso-Pérez, Rafael; Wegener, Gunter; Knittel, Katrin; Widdel, Friedrich; Harding, Katie J; Krukenberg, Viola; Meier, Dimitri V; Richter, Michael; Tegetmeyer, Halina E; Riedel, Dietmar; Richnow, Hans-Hermann; Adrian, Lorenz; Reemtsma, Thorsten; Lechtenfeld, Oliver J; Musat, Florin

2016-11-17

The anaerobic formation and oxidation of methane involve unique enzymatic mechanisms and cofactors, all of which are believed to be specific for C 1 -compounds. Here we show that an anaerobic thermophilic enrichment culture composed of dense consortia of archaea and bacteria apparently uses partly similar pathways to oxidize the C 4 hydrocarbon butane. The archaea, proposed genus 'Candidatus Syntrophoarchaeum', show the characteristic autofluorescence of methanogens, and contain highly expressed genes encoding enzymes similar to methyl-coenzyme M reductase. We detect butyl-coenzyme M, indicating archaeal butane activation analogous to the first step in anaerobic methane oxidation. In addition, Ca. Syntrophoarchaeum expresses the genes encoding β-oxidation enzymes, carbon monoxide dehydrogenase and reversible C 1 methanogenesis enzymes. This allows for the complete oxidation of butane. Reducing equivalents are seemingly channelled to HotSeep-1, a thermophilic sulfate-reducing partner bacterium known from the anaerobic oxidation of methane. Genes encoding 16S rRNA and methyl-coenzyme M reductase similar to those identifying Ca. Syntrophoarchaeum were repeatedly retrieved from marine subsurface sediments, suggesting that the presented activation mechanism is naturally widespread in the anaerobic oxidation of short-chain hydrocarbons.

Baseline assessment of fish and benthic communities of the Flower Garden Banks

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The work developed baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys employed diving,...

Geodatabase of benthic organisms for the Florida Coral Reef Tract from 1996-01-01 to 2012-01-01 (NODC Accession 0123059)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Benthic Organisms of the Florida Keys National Marine Sanctuary geodatabase is a collection of information on the distribution of benthic organisms within the...

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, and Marine Debris Sightings of the Hawaiian Archipelago in 2016

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

St. John Benthic Habitat Mapping - Moderate Depth Ground Validation Sites (Mean Locations)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitats of the moderate-depth marine environment in and around the Virgin Islands Coral Reef National Monument were mapped using a combination of...

Natural disturbance shapes benthic intertidal macroinvertebrate communities of high latitude river deltas

Science.gov (United States)

Churchwell, Roy T.; Kendall, Steve J.; Blanchard, Amy L.; Dunton, Kenneth H.; Powell, Abby N.

2016-01-01

Unlike lower latitude coastlines, the estuarine nearshore zones of the Alaskan Beaufort Sea are icebound and frozen up to 9 months annually. This annual freezing event represents a dramatic physical disturbance to fauna living within intertidal sediments. The main objectives of this study were to describe the benthic communities of Beaufort Sea deltas, including temporal changes and trophic structure. Understanding benthic invertebrate communities provided a baseline for concurrent research on shorebird foraging ecology at these sites. We found that despite continuous year-to-year episodes of annual freezing, these estuarine deltas are populated by a range of invertebrates that represent both marine and freshwater assemblages. Freshwater organisms like Diptera and Oligochaeta not only survive this extreme event, but a marine invasion of infaunal organisms such as Amphipoda and Polychaeta rapidly recolonizes the delta mudflats following ice ablation. These delta sediments of sand, silt, and clay are fine in structure compared to sediments of other Beaufort Sea coastal intertidal habitats. The relatively depauperate invertebrate community that ultimately develops is composed of marine and freshwater benthic invertebrates. The composition of the infauna also reflects two strategies that make life on Beaufort Sea deltas possible: a migration of marine organisms from deeper lagoons to the intertidal and freshwater biota that survive the 9-month ice-covered period in frozen sediments. Stable isotopic analyses reveal that both infaunal assemblages assimilate marine and terrestrial sources of organic carbon. These results provide some of the first quantitative information on the infaunal food resources of shallow arctic estuarine systems and the long-term persistence of these invertebrate assemblages. Our data help explain the presence of large numbers of shorebirds in these habitats during the brief summer open-water period and their trophic importance to migrating

Mapping of marine benthic invertebrates in the Oslofjord and the Skagerrak: sampling data of museum collections from 1950-1955 and from recent investigations

Directory of Open Access Journals (Sweden)

Eivind Oug

2015-12-01

Full Text Available Data from large sampling programmes for the mapping of marine invertebrates in the Oslofjord, Norway, and the Skagerrak, spanning more than six decades, are compiled and digitized to provide easy access in modern data repositories. Two sampling programmes undertaken in the period 1950–55 are still the most extensive mapping of marine benthic fauna in the area. Information from a total of more than 900 localities, or sampling events, covering all benthic habitats in the Oslofjord and coastal waters to Kvitsøy in Rogaland county, have been carefully digitized from field notes, original sea charts, and primary observations from sample handling in the field. Geographical coordinates referred to WGS84 chart datum have been fixed with a general accuracy of 20 m in the Oslofjord and 100–250 m in coastal areas, based on precise map sketches with cross-bearings to land objects and chart annotations. Most samples were collected using triangular, Agassiz and lightweight dredges. The collected material has been deposited in the collections of the Natural History Museum, University of Oslo. Two recent projects, ‘Polyskag’ and ‘Bioskag’ (2006–2014, are briefly described. The projects focused on the diversity of marine bristle worms (Polychaeta, inter alia providing material for molecular genetic analyses. Type localities for early described species and generally understudied biotopes were visited. The data from the 1950s, together with recent studies, constitute a considerable resource for studies of biodiversity, facilitated through the sharing of species records from the museum collections in modern data repositories. The accurate positioning of sampling localities in the 1950s is of particular value for documenting species distributions over long time spans, thus providing a reference base for studying present and future species changes and assessing the effects of human influence and environmental changes in the Oslofjord and the Skagerrak.

Benthic organisms and marine toxic substances and pollutants data collected using net casts and other instruments from the GYRE and other platforms in NW Atlantic Ocean from 11 November 1983 to 30 July 1986 (NODC Accession 8800192)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic organisms and marine toxic substances and pollutants were collected using net casts, sediment sampler, and other instruments from the GYRE and other...

Modelling marine sediment biogeochemistry: Current knowledge gaps, challenges, and some methodological advice for advancement

DEFF Research Database (Denmark)

Lessin, Gennadi; Artioli, Yuri; Almroth-Rosell, Elin

2018-01-01

The benthic environment is a crucial component of marine systems in the provision of ecosystem services, sustaining biodiversity and in climate regulation, and therefore important to human society. With the contemporary increase in computational power, model resolution and technological improveme......The benthic environment is a crucial component of marine systems in the provision of ecosystem services, sustaining biodiversity and in climate regulation, and therefore important to human society. With the contemporary increase in computational power, model resolution and technological...... improvements in quality and quantity of benthic data, it is necessary to ensure that benthic systems are appropriately represented in coupled benthic-pelagic biogeochemical and ecological modelling studies. In this paper we focus on five topical challenges related to various aspects of modelling benthic...... environments: organic matter reactivity, dynamics of benthic-pelagic boundary layer, microphytobenthos, biological transport and small-scale heterogeneity, and impacts of episodic events. We discuss current gaps in their understanding and indicate plausible ways ahead. Further, we propose a three...

Bicarbonate uptake by marine Crenarchaeota

NARCIS (Netherlands)

Wuchter, C.; Schouten, S.; Boschker, H.T.S.; Sinninghe Damsté, J.S.

2003-01-01

Biphytanyl membrane lipids and 16S rRNA sequences derived from marine Crenarchaeota were detected in shallow North Sea surface water in February 2002. To investigate the carbon fixation mechanism of these uncultivated archaea in situ 13C bicarbonate tracer experiments were performed with this water

Bioprospecting Archaea: Focus on Extreme Halophiles

KAUST Repository

Antunes, André

2016-12-12

In 1990, Woese et al. divided the Tree of Life into three separate domains: Eukarya, Bacteria, and Archaea. Archaea were originally perceived as little more than “odd bacteria” restricted to extreme environmental niches, but later discoveries challenged this assumption. Members of this domain populate a variety of unexpected environments (e.g. soils, seawater, and human bodies), and we currently witness ongoing massive expansions of the archaeal branch of the Tree of Life. Archaea are now recognized as major players in the biosphere and constitute a significant fraction of the earth’s biomass, yet they remain underexplored. An ongoing surge in exploration efforts is leading to an increase in the (a) number of isolated strains, (b) associated knowledge, and (c) utilization of Archaea in biotechnology. They are increasingly employed in fields as diverse as biocatalysis, biocomputing, bioplastic production, bioremediation, bioengineering, food, pharmaceuticals, and nutraceuticals. This chapter provides a general overview on bioprospecting Archaea, with a particular focus on extreme halophiles. We explore aspects such as diversity, ecology, screening techniques and biotechnology. Current and future trends in mining for applications are discussed.

Shallow-Water Benthic Habitats of Southwest Puerto Rico: Accuracy Assessment Site Locations

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of two areas in Southwest Puerto Rico (PR), including the Guanica Bay/La Parguera...

Shallow-Water Benthic Habitats of Southwest Puerto Rico: Ground Validation Site Locations

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of two areas in Southwest Puerto Rico (PR), including the Guanica Bay/La Parguera...

Benthic fluxes of mercury during redox changes in pristine coastal marine sediments from the Gulf of Trieste (northern Adriatic Sea)

Energy Technology Data Exchange (ETDEWEB)

Koron, Neza [National Institute of Biology, Piran (Slovenia). Marine Biological Section; Faganeli, Jadran [National Institute of Biology, Piran (Slovenia). Marine Biological Section; Jozef Stefan Institute, Ljubljana (Slovenia). Dept. of Environmental Sciences

2012-12-15

Purpose: The Gulf of Trieste (northern Adriatic Sea) is an example of a coastal environment contaminated with mercury (Hg). Contamination is a consequence of nearly 500 years of activity at the Idrija Mine (western Slovenia), which is the second largest Hg mine in the world. Oxygen depletion can be common in the Gulf of Trieste due to late summer stratification of the water column and accumulation of labile organic matter. Since changing redox conditions can have an impact on Hg transformations, we studied the effect of oxygen depletion, in parallel with sulphide, iron (Fe), manganese (Mn), fluorescent dissolved organic matter (FDOM) and nitrogen (N) and phosphorus (P) availability, on total Hg and methylmercury (MeHg) fluxes from sediments. Materials and methods: Pore water concentrations and benthic fluxes of total dissolved Hg and MeHg were studied in situ and in microcosm laboratory experiments using flux chambers encompassing three different stages: oxic, anoxic and reoxidation. Results and discussion: Our experiments showed that in the oxic stage there were small effluxes of MeHg to the water column, which increased in the anoxic stage and dropped rapidly in a subsequent reoxic stage, showing influx. Our results support the hypothesis that MeHg desorption from reduced metal hydroxides under anoxic conditions, and co-precipitation with Fe-oxides and MeHg demethylation in the reoxidation stage, may play a major role in determining MeHg benthic fluxes. For Hg and MeHg, it appears that there is little relationship between their pore water distribution and flux and that of FDOM, i.e. humics. Conclusions: The results indicate that there was no significant difference in Hg and MeHg pore water levels and their benthic fluxes between the contaminated northern and central parts of the Gulf of Trieste and the pristine southern part. This suggests that shallow and stratified coastal marine environments, in general, represent areas with a risk of high benthic release of

The importance of benthic-pelagic coupling for marine ecosystem functioning in a changing world.

Science.gov (United States)

Griffiths, Jennifer R; Kadin, Martina; Nascimento, Francisco J A; Tamelander, Tobias; Törnroos, Anna; Bonaglia, Stefano; Bonsdorff, Erik; Brüchert, Volker; Gårdmark, Anna; Järnström, Marie; Kotta, Jonne; Lindegren, Martin; Nordström, Marie C; Norkko, Alf; Olsson, Jens; Weigel, Benjamin; Žydelis, Ramunas; Blenckner, Thorsten; Niiranen, Susa; Winder, Monika

2017-06-01

Benthic-pelagic coupling is manifested as the exchange of energy, mass, or nutrients between benthic and pelagic habitats. It plays a prominent role in aquatic ecosystems, and it is crucial to functions from nutrient cycling to energy transfer in food webs. Coastal and estuarine ecosystem structure and function are strongly affected by anthropogenic pressures; however, there are large gaps in our understanding of the responses of inorganic nutrient and organic matter fluxes between benthic habitats and the water column. We illustrate the varied nature of physical and biological benthic-pelagic coupling processes and their potential sensitivity to three anthropogenic pressures - climate change, nutrient loading, and fishing - using the Baltic Sea as a case study and summarize current knowledge on the exchange of inorganic nutrients and organic material between habitats. Traditionally measured benthic-pelagic coupling processes (e.g., nutrient exchange and sedimentation of organic material) are to some extent quantifiable, but the magnitude and variability of biological processes are rarely assessed, preventing quantitative comparisons. Changing oxygen conditions will continue to have widespread effects on the processes that govern inorganic and organic matter exchange among habitats while climate change and nutrient load reductions may have large effects on organic matter sedimentation. Many biological processes (predation, bioturbation) are expected to be sensitive to anthropogenic drivers, but the outcomes for ecosystem function are largely unknown. We emphasize how improved empirical and experimental understanding of benthic-pelagic coupling processes and their variability are necessary to inform models that can quantify the feedbacks among processes and ecosystem responses to a changing world. © 2017 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Chemical, benthic organisms, zooplankton, marine toxic substances, and other data from moored current meter casts and other instruments in the Gulf of Mexico during the Brine Disposal project, 1979-08-30 to 1981-09-21 (NODC Accession 8200012)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Chemical, marine toxic substances, benthic organisms, zooplankton, and other data were collected using moored current meter casts and other instruments in the Gulf...

Baseline assessment of benthic communities of the Flower Garden Banks (2010 - present): 2011

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

Archaea: Essential inhabitants of the human digestive microbiota

Directory of Open Access Journals (Sweden)

Vanessa Demonfort Nkamga

2017-03-01

Full Text Available Prokaryotes forming the domain of Archaea, named after their first discovery in extreme environments, are acknowledged but still neglected members of the human digestive tract microbiota. In this microbiota, cultured archaea comprise anaerobic methanogens: Methanobrevibacter smithii, Methanobrevibacter oralis, Methanobrevibacter massiliense, Methanosphaera stadtmanae, Methanobrevibacter arboriphilus, Methanobrevibacter millerae and Methanomassiliicoccus luminyensis; along with the non-methanogen halophilic Archaea Halopherax massiliense. Metagenomic analyses detected DNA sequences indicative of the presence of additional methanogenic and non-methanogenic halophilic Archaea in the human intestinal tract and oral cavity. Methanogens specifically metabolize hydrogen produced by anaerobic fermentation of carbohydrates into methane; further transforming heavy metals and metalloids into methylated derivatives, such as trimethylbismuth which is toxic for both human and bacterial cells. However, the role of Archaea as pathogens remains to be established. Future researches will aim to increase the repertoire of the human digestive tract Archaea and to understand their possible association with intestinal and extra-intestinal infections and diseases including weight regulation abnormalities. Keywords: Human-associated Archaea, Methanogens, Halophiles, Oral cavity, Intestinal tract

Benthic foraminifera and heavy metals distribution: A case study from the Naples Harbour (Tyrrhenian Sea, Southern Italy)

International Nuclear Information System (INIS)

Ferraro, L.; Sprovieri, M.; Alberico, I.; Lirer, F.; Prevedello, L.; Marsella, E.

2006-01-01

The analysis of 90 surficial sediments from three docks of the Naples Harbour (Levante, Granili, and Diaz) permits to compare the distribution modes of heavy metals with grain sizes, total organic carbon content (TOC) and distribution patterns of benthic foraminifera. Foraminiferal density and species richness decrease with the increasing toxic elements concentrations from the Levante to the Diaz dock. Median concentrations of Ni, Pb, Zn, and Hg (medians of 21.43 mg/kg, 270.24 mg/kg, 489.65 mg/kg, and 1.18 mg/kg, respectively) were reported for the Diaz dock where foraminifera are absent, thus suggesting a possible impact of toxic elements on the benthic ecosystem balance. Compared to the unpolluted marine sediments of the Granili dock, the Levante area shows higher heavy metals levels and a quasi-oligotypic benthic assemblage. This is dominated by the tolerant species Ammonia tepida that may be used as bio-indicator of pollution of anthropised marine sediments. - Benthic foraminiferal density and species distribution may be used as pollution indicators

Archaea Signal Recognition Particle Shows the Way

Directory of Open Access Journals (Sweden)

Christian Zwieb

2010-01-01

Full Text Available Archaea SRP is composed of an SRP RNA molecule and two bound proteins named SRP19 and SRP54. Regulated by the binding and hydrolysis of guanosine triphosphates, the RNA-bound SRP54 protein transiently associates not only with the hydrophobic signal sequence as it emerges from the ribosomal exit tunnel, but also interacts with the membrane-associated SRP receptor (FtsY. Comparative analyses of the archaea genomes and their SRP component sequences, combined with structural and biochemical data, support a prominent role of the SRP RNA in the assembly and function of the archaea SRP. The 5e motif, which in eukaryotes binds a 72 kilodalton protein, is preserved in most archaea SRP RNAs despite the lack of an archaea SRP72 homolog. The primary function of the 5e region may be to serve as a hinge, strategically positioned between the small and large SRP domain, allowing the elongated SRP to bind simultaneously to distant ribosomal sites. SRP19, required in eukaryotes for initiating SRP assembly, appears to play a subordinate role in the archaea SRP or may be defunct. The N-terminal A region and a novel C-terminal R region of the archaea SRP receptor (FtsY are strikingly diverse or absent even among the members of a taxonomic subgroup.

Benthic organisms and marine toxic substances and pollutants collected using sediment sampler and net casts from the GUS III and EXCELLENCE in the Gulf of Mexico from 1978-05-24 to 1979-02-26 (NODC Accession 7900304)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic organisms and marine toxic substances and pollutants were collected using sediment sampler and net casts in the Gulf of Mexico. Data were submitted by Texas...

Benthic macroinvertebrate community structure and distribution in the Ayeyarwady continental shelf, Andaman Sea

Digital Repository Service at National Institute of Oceanography (India)

Ansari Z.A.; Furtado, R.; Badesab, S.; Mehta, P.; Thwin, S.

water, Myanmar] Introduction Abundance of benthic fauna is one of the biological indices that support the food chain hypothesis of overall productivity in marine ecosystem1. Changes in benthic community may occur on different spatial scale..., biomass and species diversity of macrobenthos was more in the inshore waters than in the offshore areas of Malaysia and Gulf of Thailand. As indicated earlier, a significant amount of the variation in faunal abundances, not unexpectedly, is a function...

Subtidal Benthic Invertebrates Shifting Northward Along the U.S. Atlantic Coast

Science.gov (United States)

Numerous marine and terrestrial species have shifted their ranges poleward in response to warming from global climate change. However, few studies have examined range shifts of subtidal benthic communities in estuarine and nearshore waters. This study examined 20 years (1990–2010...

Evaluation of Four Supervised Learning Methods for Benthic Habitat Mapping Using Backscatter from Multi-Beam Sonar

Directory of Open Access Journals (Sweden)

Jacquomo Monk

2012-11-01

Full Text Available An understanding of the distribution and extent of marine habitats is essential for the implementation of ecosystem-based management strategies. Historically this had been difficult in marine environments until the advancement of acoustic sensors. This study demonstrates the applicability of supervised learning techniques for benthic habitat characterization using angular backscatter response data. With the advancement of multibeam echo-sounder (MBES technology, full coverage datasets of physical structure over vast regions of the seafloor are now achievable. Supervised learning methods typically applied to terrestrial remote sensing provide a cost-effective approach for habitat characterization in marine systems. However the comparison of the relative performance of different classifiers using acoustic data is limited. Characterization of acoustic backscatter data from MBES using four different supervised learning methods to generate benthic habitat maps is presented. Maximum Likelihood Classifier (MLC, Quick, Unbiased, Efficient Statistical Tree (QUEST, Random Forest (RF and Support Vector Machine (SVM were evaluated to classify angular backscatter response into habitat classes using training data acquired from underwater video observations. Results for biota classifications indicated that SVM and RF produced the highest accuracies, followed by QUEST and MLC, respectively. The most important backscatter data were from the moderate incidence angles between 30° and 50°. This study presents initial results for understanding how acoustic backscatter from MBES can be optimized for the characterization of marine benthic biological habitats.

Dinoflagellate cysts and benthic foraminifera in surface sediments from the Mar Piccolo in Taranto (Ionian Sea, Southern Italy)

Science.gov (United States)

Ferraro, L.; Rubino, F.; Frontalini, F.; Belmonte, M.; Di Leo, A.; Giandomenico, S.; Greco, M.; Lirer, F.; Spada, L.; Vallefuoco, M.

2012-12-01

Coastal areas have traditionally been places of human settlement, with the increasing development of cities, industries and other human-related activities possibly having an impact on the aquatic ecosystem. These impacts may take the form of pollution from industrial, domestic, agricultural or mining activities. For this reason, attention to marine environmental problems has recently increased and the search for new methodologies and techniques for the monitoring of coastal-marine areas become more and more active and accurate. In this context biological indicators result a useful tool to provide indication of environmental conditions including the presence or absence of contaminants; in fact biological monitoring is more directly related to the ecological health of an ecosystem than are chemical data. The increasing importance of bioindicators is also encouraged within the European Union's Water Framework Directive (WFD), which aims to achieve a good ecological status in all European water bodies (i.e., rivers, lakes and coastal waters). Among the wide range of bioindicators, 5 biological elements are listed within the WFD: phytoplankton, macroalgae, angiosperms, benthic invertebrates and fishes. Benthic invertebrates as foraminifera represent a group of protozoa widely distributed in all brackish and marine environments which are used in studies assessing the environmental quality of areas subject to intense human activity. Moreover in coastal marine environments benthic and pelagic domain present several relationships, one of these is represented by the life cycles of phytoplankton species, as Dinoflagellates, which include the production of benthic stages (cysts). These dormant stages, which accumulate in confined marine muddy areas, such as ports, lagoons or estuaries, can reach high densities, similar to the seed banks of terrestrial plants. The cysts have a high preservation potential and can rest in/on the sediments for decades. Due to this peculiar

Evidence for methane production by the marine algae Emiliania huxleyi

Science.gov (United States)

Lenhart, Katharina; Klintzsch, Thomas; Langer, Gerald; Nehrke, Gernot; Bunge, Michael; Schnell, Sylvia; Keppler, Frank

2016-06-01

Methane (CH4), an important greenhouse gas that affects radiation balance and consequently the earth's climate, still has uncertainties in its sinks and sources. The world's oceans are considered to be a source of CH4 to the atmosphere, although the biogeochemical processes involved in its formation are not fully understood. Several recent studies provided strong evidence of CH4 production in oxic marine and freshwaters, but its source is still a topic of debate. Studies of CH4 dynamics in surface waters of oceans and large lakes have concluded that pelagic CH4 supersaturation cannot be sustained either by lateral inputs from littoral or benthic inputs alone. However, regional and temporal oversaturation of surface waters occurs frequently. This comprises the observation of a CH4 oversaturating state within the surface mixed layer, sometimes also termed the "oceanic methane paradox". In this study we considered marine algae as a possible direct source of CH4. Therefore, the coccolithophore Emiliania huxleyi was grown under controlled laboratory conditions and supplemented with two 13C-labeled carbon substrates, namely bicarbonate and a position-specific 13C-labeled methionine (R-S-13CH3). The CH4 production was 0.7 µg particular organic carbon (POC) g-1 d-1, or 30 ng g-1 POC h-1. After supplementation of the cultures with the 13C-labeled substrate, the isotope label was observed in headspace CH4. Moreover, the absence of methanogenic archaea within the algal culture and the oxic conditions during CH4 formation suggest that the widespread marine algae Emiliania huxleyi might contribute to the observed spatially and temporally restricted CH4 oversaturation in ocean surface waters.

Regulation of transcription in hyperthermophilic archaea

NARCIS (Netherlands)

Brinkman, A.B.

2002-01-01

The aim of the research presented here was to insight in the mechanisms by which transcription in hyperthermophilic archaea is regulated. To accomplish this, we have aimed (I) to identify transcriptional regulatory proteins from hyperthermophilic archaea, (II) to characterize these

Unified Geomorphological Analysis Workflows with Benthic Terrain Modeler

Directory of Open Access Journals (Sweden)

Shaun Walbridge

2018-03-01

Full Text Available High resolution remotely sensed bathymetric data is rapidly increasing in volume, but analyzing this data requires a mastery of a complex toolchain of disparate software, including computing derived measurements of the environment. Bathymetric gradients play a fundamental role in energy transport through the seascape. Benthic Terrain Modeler (BTM uses bathymetric data to enable simple characterization of benthic biotic communities and geologic types, and produces a collection of key geomorphological variables known to affect marine ecosystems and processes. BTM has received continual improvements since its 2008 release; here we describe the tools and morphometrics BTM can produce, the research context which this enables, and we conclude with an example application using data from a protected reef in St. Croix, US Virgin Islands.

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, and Marine Debris Sightings of the Pacific Remote Island Areas since 2014

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Application of TSL Underwater Robots (AUV) for Investigation of Benthic Ecosystems and Quantification of Benthic Invertebrate Reserves

Science.gov (United States)

Golikov, S. Yu; Dulepov, V. I.; Maiorov, I. S.

2017-11-01

The issues on the application of autonomous underwater vehicles for assessing the abundance, biomass, distribution and reserves of invertebrates in the marine benthic ecosystems and on the environmental monitoring are discussed. An example of the application of methodology to assess some of the quantitative characteristics of macrobenthos is provided based upon using the information obtained from the TSL AUV in the Peter the Great Gulf (the Sea of Japan) in the Bay of Paris and the Eastern Bosphorus Strait within the area of the bridge leading to the Russian island. For the quantitative determination of the benthic invertebrate reserves, the values of biomass density of specific species are determined. Based on the data of direct measurements and weightings, the equations of weight dependencies on the size of animals are estimated according to the studied species that are well described by the power law dependence.

Unique features of glycolysis in Archaea

NARCIS (Netherlands)

Verhees, C.H.; Kengen, S.W.M.; Tuininga, J.E.; Schut, G.J.; Adams, M.W.W.; Vos, de W.M.; Oost, van der J.

2003-01-01

An early divergence in evolution has resulted in two prokaryotic domains, the Bacteria and the Archaea. Whereas the central metabolic routes of bacteria and eukaryotes are generally well-conserved, variant pathways have developed in Archaea involving several novel enzymes with a distinct control. A

Analytical characterization of selective benthic flux components in estuarine and coastal waters

Science.gov (United States)

King, Jeffrey N.

2011-01-01

Benthic flux is the rate of flow across the bed of a water body, per unit area of bed. It is forced by component mechanisms, which interact. For example, pressure gradients across the bed, forced by tide, surface gravity waves, density gradients, bed–current interaction, turbulence, and terrestrial hydraulic gradients, drive an advective benthic flux of water and constituents between estuarine and coastal waters, and surficial aquifers. Other mechanisms also force benthic flux, such as chemical gradients, bioturbation, and dispersion. A suite of component mechanisms force a total benthic flux at any given location, where each member of the suite contributes a component benthic flux. Currently, the types and characteristics of component interactions are not fully understood. For example, components may interact linearly or nonlinearly, and the interaction may be constructive or destructive. Benthic flux is a surface water–groundwater interaction process. Its discharge component to a marine water body is referred to, in some literature, as submarine groundwater discharge. Benthic flux is important in characterizing water and constituent budgets of estuarine and coastal systems. Analytical models to characterize selective benthic flux components are reviewed. Specifically, these mechanisms are for the component associated with the groundwater tidal prism, and forced by surface gravity wave setup, surface gravity waves on a plane bed, and the terrestrial hydraulic gradient. Analytical models are applied to the Indian River Lagoon, Florida; Great South Bay, New York; and the South Atlantic Bight in South Carolina and portions of North Carolina.

Archaea.

Science.gov (United States)

Eme, Laura; Doolittle, W Ford

2015-10-05

A headline on the front page of the New York Times for November 3, 1977, read "Scientists Discover a Way of Life That Predates Higher Organisms". The accompanying article described a spectacular claim by Carl Woese and George Fox to have discovered a third form of life, a new 'domain' that we now call Archaea. It's not that these microbes were unknown before, nor was it the case that their peculiarities had gone completely unnoticed. Indeed, Ralph Wolfe, in the same department at the University of Illinois as Woese, had already discovered how it was that methanogens (uniquely on the planet) make methane, and the bizarre adaptations that allow extremely halophilic archaea (then called halobacteria) and thermoacidophiles to live in the extreme environments where they do were already under investigation in many labs. But what Woese and Fox had found was that these organisms were related to each other not just in their 'extremophily' but also phylogenetically. And, most surprisingly, they were only remotely related to the rest of the prokaryotes, which we now call the domain Bacteria (Figure 1). Copyright © 2015 Elsevier Ltd. All rights reserved.

Benthic Habitat Maps for Rose Atoll Marine National Monument in American Samoa from 2004 to 2010

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps for Rose Atoll, American Samoa were derived from high resolution, multispectral satellite imagery for 2004, 2006, and 2010. The benthic habitat...

Modelling Marine Sediment Biogeochemistry: Current Knowledge Gaps, Challenges, and Some Methodological Advice for Advancement

Directory of Open Access Journals (Sweden)

Gennadi Lessin

2018-02-01

Full Text Available The benthic environment is a crucial component of marine systems in the provision of ecosystem services, sustaining biodiversity and in climate regulation, and therefore important to human society. With the contemporary increase in computational power, model resolution and technological improvements in quality and quantity of benthic data, it is necessary to ensure that benthic systems are appropriately represented in coupled benthic-pelagic biogeochemical and ecological modelling studies. In this paper we focus on five topical challenges related to various aspects of modelling benthic environments: organic matter reactivity, dynamics of benthic-pelagic boundary layer, microphytobenthos, biological transport and small-scale heterogeneity, and impacts of episodic events. We discuss current gaps in their understanding and indicate plausible ways ahead. Further, we propose a three-pronged approach for the advancement of benthic and benthic-pelagic modelling, essential for improved understanding, management and prediction of the marine environment. This includes: (A development of a traceable and hierarchical framework for benthic-pelagic models, which will facilitate integration among models, reduce risk of bias, and clarify model limitations; (B extended cross-disciplinary approach to promote effective collaboration between modelling and empirical scientists of various backgrounds and better involvement of stakeholders and end-users; (C a common vocabulary for terminology used in benthic modelling, to promote model development and integration, and also to enhance mutual understanding.

Sub-tidal benthic habitats of central San Francisco Bay and offshore Golden Gate area: A review

Science.gov (United States)

Greene, H. Gary; Endris, Charles; Vallier, Tracy; Golden, Nadine E.; Cross, Jeffery; Ryan, Holly F.; Dieter, Bryan; Niven, Eric; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

Deep-water potential estuarine and marine benthic habitat types were defined from a variety of new and interpreted data sets in central San Francisco Bay and offshore Golden Gate area including multibeam echosounder (MBES), side-scan sonar and bottom grab samples. Potential estuarine benthic habitats identified for the first time range from hard bedrock outcrops on island and mainland flanks and some Bay floor

Shallow-Water Benthic Habitats of Southwest Puerto Rico: GeoEye Image po_502736_PS

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of two areas in Southwest Puerto Rico (PR), including the Guanica Bay/La Parguera...

Shallow-Water Benthic Habitats of Southwest Puerto Rico: GeoEye Image po_483895_PS

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of two areas in Southwest Puerto Rico (PR), including the Guanica Bay/La Parguera...

Contribution of benthic microalgae to the temporal variation in phytoplankton assemblages in a macrotidal system.

Science.gov (United States)

Hernández Fariñas, Tania; Ribeiro, Lourenço; Soudant, Dominique; Belin, Catherine; Bacher, Cédric; Lampert, Luis; Barillé, Laurent

2017-10-01

Suspended marine benthic microalgae in the water column reflect the close relationship between the benthic and pelagic components of coastal ecosystems. In this study, a 12-year phytoplankton time-series was used to investigate the contribution of benthic microalgae to the pelagic system at a site along the French-Atlantic coast. Furthermore, all taxa identified were allocated into different growth forms in order to study their seasonal patterns. The highest contribution of benthic microalgae was observed during the winter period, reaching up to 60% of the carbon biomass in the water column. The haptobenthic growth form showed the highest contribution in terms of biomass, dominant in the fall-winter period when the turbidity and the river flow were high. The epipelic growth form did not follow any seasonal pattern. The epiphytic diatom Licmophora was most commonly found during summer. As benthic microalgae were found in the water column throughout the year, the temporal variation detected in the structure of pelagic assemblages in a macrotidal ecosystem was partly derived from the differentiated contribution of several benthic growth forms. © 2017 Phycological Society of America.

Baseline assessment of fish and benthic communities of the Flower Garden Banks (NODC Accession 0118358)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

Detection of methanogenic archaea in seawater particles and the digestive tract of a marine fish species

NARCIS (Netherlands)

van der Maarel, MJEC; Sprenger, W; Haanstra, R; Forney, LJ

1999-01-01

A methanogen-specific nested PCR approach was used to detect methanogenic archaea in seawater particles of the North Sea and the feces and the digestive tract of flounder (Platichthys flesus), a fish found in the North Sea. A number of 16S rDNA sequences with 97.6-99.5% similarity to

To Eat or Not to Eat? Debris Selectivity by Marine Turtles

Science.gov (United States)

Schuyler, Qamar; Hardesty, Britta Denise; Wilcox, Chris; Townsend, Kathy

2012-01-01

Marine debris is a growing problem for wildlife, and has been documented to affect more than 267 species worldwide. We investigated the prevalence of marine debris ingestion in 115 sea turtles stranded in Queensland between 2006–2011, and assessed how the ingestion rates differ between species (Eretmochelys imbricata vs. Chelonia mydas) and by turtle size class (smaller oceanic feeders vs. larger benthic feeders). Concurrently, we conducted 25 beach surveys to estimate the composition of the debris present in the marine environment. Based on this proxy measurement of debris availability, we modeled turtles’ debris preferences (color and type) using a resource selection function, a method traditionally used for habitat and food selection. We found no significant difference in the overall probability of ingesting debris between the two species studied, both of which have similar life histories. Curved carapace length, however, was inversely correlated with the probability of ingesting debris; 54.5% of pelagic sized turtles had ingested debris, whereas only 25% of benthic feeding turtles were found with debris in their gastrointestinal system. Benthic and pelagic sized turtles also exhibited different selectivity ratios for debris ingestion. Benthic phase turtles had a strong selectivity for soft, clear plastic, lending support to the hypothesis that sea turtles ingest debris because it resembles natural prey items such as jellyfish. Pelagic turtles were much less selective in their feeding, though they showed a trend towards selectivity for rubber items such as balloons. Most ingested items were plastic and were positively buoyant. This study highlights the need to address increasing amounts of plastic in the marine environment, and provides evidence for the disproportionate ingestion of balloons by marine turtles. PMID:22829894

To eat or not to eat? Debris selectivity by marine turtles.

Directory of Open Access Journals (Sweden)

Qamar Schuyler

Full Text Available Marine debris is a growing problem for wildlife, and has been documented to affect more than 267 species worldwide. We investigated the prevalence of marine debris ingestion in 115 sea turtles stranded in Queensland between 2006-2011, and assessed how the ingestion rates differ between species (Eretmochelys imbricata vs. Chelonia mydas and by turtle size class (smaller oceanic feeders vs. larger benthic feeders. Concurrently, we conducted 25 beach surveys to estimate the composition of the debris present in the marine environment. Based on this proxy measurement of debris availability, we modeled turtles' debris preferences (color and type using a resource selection function, a method traditionally used for habitat and food selection. We found no significant difference in the overall probability of ingesting debris between the two species studied, both of which have similar life histories. Curved carapace length, however, was inversely correlated with the probability of ingesting debris; 54.5% of pelagic sized turtles had ingested debris, whereas only 25% of benthic feeding turtles were found with debris in their gastrointestinal system. Benthic and pelagic sized turtles also exhibited different selectivity ratios for debris ingestion. Benthic phase turtles had a strong selectivity for soft, clear plastic, lending support to the hypothesis that sea turtles ingest debris because it resembles natural prey items such as jellyfish. Pelagic turtles were much less selective in their feeding, though they showed a trend towards selectivity for rubber items such as balloons. Most ingested items were plastic and were positively buoyant. This study highlights the need to address increasing amounts of plastic in the marine environment, and provides evidence for the disproportionate ingestion of balloons by marine turtles.

The unique features of glycolytic pathways in Archaea.

OpenAIRE

Verhees, Corné H; Kengen, Servé W M; Tuininga, Judith E; Schut, Gerrit J; Adams, Michael W W; De Vos, Willem M; Van Der Oost, John

2003-01-01

An early divergence in evolution has resulted in two prokaryotic domains, the Bacteria and the Archaea. Whereas the central metabolic routes of bacteria and eukaryotes are generally well-conserved, variant pathways have developed in Archaea involving several novel enzymes with a distinct control. A spectacular example of convergent evolution concerns the glucose-degrading pathways of saccharolytic archaea. The identification, characterization and comparison of the glycolytic enzymes of a vari...

Molecular biology of hyperthermophilic Archaea.

Science.gov (United States)

van der Oost, J; Ciaramella, M; Moracci, M; Pisani, F M; Rossi, M; de Vos, W M

1998-01-01

The sequences of a number of archaeal genomes have recently been completed, and many more are expected shortly. Consequently, the research of Archaea in general and hyperthermophiles in particular has entered a new phase, with many exciting discoveries to be expected. The wealth of sequence information has already led, and will continue to lead to the identification of many enzymes with unique properties, some of which have potential for industrial applications. Subsequent functional genomics will help reveal fundamental matters such as details concerning the genetic, biochemical and physiological adaptation of extremophiles, and hence give insight into their genomic evolution, polypeptide structure-function relations, and metabolic regulation. In order to optimally exploit many unique features that are now emerging, the development of genetic systems for hyperthermophilic Archaea is an absolute requirement. Such systems would allow the application of this class of Archaea as so-called "cell factories": (i) expression of certain archaeal enzymes for which no suitable conventional (mesophilic bacterial or eukaryal) systems are available, (ii) selection for thermostable variants of potentially interesting enzymes from mesophilic origin, and (iii) the development of in vivo production systems by metabolic engineering. An overview is given of recent insight in the molecular biology of hyperthermophilic Archaea, as well as of a number of promising developments that should result in the generation of suitable genetic systems in the near future.

Marine macrofossil communities in the uppermost Maastrichtian chalk of Stevns Klint, Denmark

DEFF Research Database (Denmark)

Hansen, Thomas; Surlyk, Finn

2014-01-01

Three successive marine habitats and their benthic macrofossil communities have been recognised and assessed in the uppermost Maastrichtian chalk of Stevns Klint, Denmark. The mound-bedded lower Sigerslev Member was deposited below the photic zone under the influence of persistent, non-erosive bo......Three successive marine habitats and their benthic macrofossil communities have been recognised and assessed in the uppermost Maastrichtian chalk of Stevns Klint, Denmark. The mound-bedded lower Sigerslev Member was deposited below the photic zone under the influence of persistent, non...

Accuracy Assessment Sites - Moderate-Depth Benthic Habitats of St. John, U.S. Virgin Islands (2009)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the moderate-depth marine environment of St. John, U.S. Virgin Islands were created using a combination of semi-automated classification and...

Proteomic properties reveal phyloecological clusters of Archaea.

Directory of Open Access Journals (Sweden)

Nela Nikolic

Full Text Available In this study, we propose a novel way to describe the variety of environmental adaptations of Archaea. We have clustered 57 Archaea by using a non-redundant set of proteomic features, and verified that the clusters correspond to environmental adaptations to the archaeal habitats. The first cluster consists dominantly of hyperthermophiles and hyperthermoacidophilic aerobes. The second cluster joins together halophilic and extremely halophilic Archaea, while the third cluster contains mesophilic (mostly methanogenic Archaea together with thermoacidophiles. The non-redundant subset of proteomic features was found to consist of five features: the ratio of charged residues to uncharged, average protein size, normalized frequency of beta-sheet, normalized frequency of extended structure and number of hydrogen bond donors. We propose this clustering to be termed phyloecological clustering. This approach could give additional insights into relationships among archaeal species that may be hidden by sole phylogenetic analysis.

Rhythmic behaviour of marine benthopelagic species and the synchronous dynamics of benthic communities

Science.gov (United States)

Aguzzi, Jacopo; Sbragaglia, Valerio; Tecchio, Samuele; Navarro, Joan; Company, Joan B.

2015-01-01

Light-intensity cycles drive the relentless motion of species in the oceans, and water column migrants may cyclically make contact with the seabed, hence influencing the temporal dynamism of benthic ecosystems. The influence of light on this process remains largely unknown to date. In this study, we focus on the occurrence of day-night changes in benthic communities on the western Mediterranean continental shelf (100 m depth) and slope (400 m depth) as a potential result of a behaviourally sustained benthopelagic coupling. We analysed fluctuations in species abundance based on trawling at hourly intervals over a 4-day period as a proxy of activity rhythms at the seabed. We also measured light in situ to assess how the depth-related decrease of its intensity influences species rhythms and the occurrence of the putative benthopelagic synchronisation. Temporal similarities in the catch patterns for different species were screened by dendrogram analysis. On the continental shelf, species performing diel migrations (i.e., over a 24 h period) that were either vertical (i.e., benthopelagic) or horizontal across depths (i.e., nektobenthic) clustered together separately from the more sedentary endobenthic and epibenthic species. At the same depth, waveform analysis showed a significant diurnal increase in the catch of water column species and benthic species at night. Such coupling was absent on the continental slope, where light intensity was several orders of magnitude lower than that on the shelf. Our data indicate that diel activity rhythms, which are well known for vertical pelagic migrators, are also evident in the benthos. We discuss the role of light as a major evolutionary driver shaping the composition and biodiversity of benthic communities via visual predation.

2011 Archaea: Ecology, Metabolism, & Molecular Biology

Energy Technology Data Exchange (ETDEWEB)

Keneth Stedman

2011-08-05

Archaea, one of three major evolutionary lineages of life, are a fascinating and diverse group of microbes with deep roots overlapping those of eukaryotes. The focus of the 'Archaea: Ecology Metabolism & Molecular Biology' GRC conference expands on a number of emerging topics highlighting new paradigms in archaeal metabolism, genome function and systems biology; information processing; evolution and the tree of life; the ecology and diversity of archaea and their viruses. The strength of this conference lies in its ability to couple a field with a rich history in high quality research with new scientific findings in an atmosphere of stimulating exchange. This conference remains an excellent opportunity for younger scientists to interact with world experts in this field.

Baseline assessment of the fish and benthic communities of the Flower Garden Banks (NODC Accession 0118358)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

A Servicewide Benthic Mapping Program for National Parks

Science.gov (United States)

Moses, Christopher S.; Nayegandhi, Amar; Beavers, Rebecca; Brock, John

2010-01-01

In 2007, the National Park Service (NPS) Inventory and Monitoring Program directed the initiation of a benthic habitat mapping program in ocean and coastal parks in alignment with the NPS Ocean Park Stewardship 2007-2008 Action Plan. With 74 ocean and Great Lakes parks stretching over more than 5,000 miles of coastline across 26 States and territories, this Servicewide Benthic Mapping Program (SBMP) is essential. This program will deliver benthic habitat maps and their associated inventory reports to NPS managers in a consistent, servicewide format to support informed management and protection of 3 million acres of submerged National Park System natural and cultural resources. The NPS and the U.S. Geological Survey (USGS) convened a workshop June 3-5, 2008, in Lakewood, Colo., to discuss the goals and develop the design of the NPS SBMP with an assembly of experts (Moses and others, 2010) who identified park needs and suggested best practices for inventory and mapping of bathymetry, benthic cover, geology, geomorphology, and some water-column properties. The recommended SBMP protocols include servicewide standards (such as gap analysis, minimum accuracy, final products) as well as standards that can be adapted to fit network and park unit needs (for example, minimum mapping unit, mapping priorities). SBMP Mapping Process. The SBMP calls for a multi-step mapping process for each park, beginning with a gap assessment and data mining to determine data resources and needs. An interagency announcement of intent to acquire new data will provide opportunities to leverage partnerships. Prior to new data acquisition, all involved parties should be included in a scoping meeting held at network scale. Data collection will be followed by processing and interpretation, and finally expert review and publication. After publication, all digital materials will be archived in a common format. SBMP Classification Scheme. The SBMP will map using the Coastal and Marine Ecological

Spatial distribution maps for benthic communities

DEFF Research Database (Denmark)

Sørensen, Per S.

1999-01-01

ecosystems, were selected. These species are supposed to be good indicators of marine ecosystem health. The hydroacoustic measurements comprise preprocessed echo sounder recordings and side-scan sonar data forming a large and unique collection of datasets based on 4 field campaigns in Øresund...... of the distribution maps and to be combined with biogeochemical models describing spatiotemporal population dynamics. Finally, the use of side-scan sonar data is illustrated in a data fusion exercise combining side-scan sonar data with the results based on echo sounder measurements. The feasible use of side......-scan sonar for mapping of benthic communities remains an open task to be studied in the future. The data processing methodology developed is a contribution to the emerging field of hydroacoustic marine biology. The method of penalised maximum pseudo-likelihood for estimation of the Ising model under a huge...

Mussel colonization of a high flow artificial benthic habitat: Byssogenesis holds the key.

NARCIS (Netherlands)

Rajagopal, S.; Venugopalan, V.P.; Velde, G. van der; Jenner, H.A.

2006-01-01

Water flow is an important characteristic determining the settlement and growth of macroinvertebrates in the marine environment. Intake systems of coastal power stations offer a unique opportunity to study the effect of water flow on benthic organisms under field conditions. The cooling water intake

Novel metabolic pathways in Archaea.

Science.gov (United States)

Sato, Takaaki; Atomi, Haruyuki

2011-06-01

The Archaea harbor many metabolic pathways that differ to previously recognized classical pathways. Glycolysis is carried out by modified versions of the Embden-Meyerhof and Entner-Doudoroff pathways. Thermophilic archaea have recently been found to harbor a bi-functional fructose-1,6-bisphosphate aldolase/phosphatase for gluconeogenesis. A number of novel pentose-degrading pathways have also been recently identified. In terms of anabolic metabolism, a pathway for acetate assimilation, the methylaspartate cycle, and two CO2-fixing pathways, the 3-hydroxypropionate/4-hydroxybutyrate cycle and the dicarboxylate/4-hydroxybutyrate cycle, have been elucidated. As for biosynthetic pathways, recent studies have clarified the enzymes responsible for several steps involved in the biosynthesis of inositol phospholipids, polyamine, coenzyme A, flavin adeninedinucleotide and heme. By examining the presence/absence of homologs of these enzymes on genome sequences, we have found that the majority of these enzymes and pathways are specific to the Archaea. Copyright © 2011 Elsevier Ltd. All rights reserved.

Modelling temporal and spatial dynamics of benthic fauna in North-West-European shelf seas

Science.gov (United States)

Lessin, Gennadi; Bruggeman, Jorn; Artioli, Yuri; Butenschön, Momme; Blackford, Jerry

2017-04-01

Benthic zones of shallow shelf seas receive high amounts of organic material. Physical processes such as resuspension, as well as complex transformations mediated by diverse faunal and microbial communities, define fate of this material, which can be returned to the water column, reworked within sediments or ultimately buried. In recent years, numerical models of various complexity and serving different goals have been developed and applied in order to better understand and predict dynamics of benthic processes. ERSEM includes explicit parameterisations of several groups of benthic biota, which makes it particularly applicable for studies of benthic biodiversity, biological interactions within sediments and benthic-pelagic coupling. To assess model skill in reproducing temporal (inter-annual and seasonal) dynamics of major benthic macrofaunal groups, 1D model simulation results were compared with data from the Western Channel Observatory (WCO) benthic survey. The benthic model was forced with organic matter deposition rates inferred from observed phytoplankton abundance and model parameters were subsequently recalibrated. Based on model results and WCO data comparison, deposit-feeders exert clear seasonal variability, while for suspension-feeders inter-annual variability is more pronounced. Spatial distribution of benthic fauna was investigated using results of a full-scale NEMO-ERSEM hindcast simulation of the North-West European Shelf Seas area, covering the period of 1981-2014. Results suggest close relationship between spatial distribution of biomass of benthic faunal functional groups in relation to bathymetry, hydrodynamic conditions and organic matter supply. Our work highlights that it is feasible to construct, implement and validate models that explicitly include functional groups of benthic macrofauna. Moreover, the modelling approach delivers detailed information on benthic biogeochemistry and food-web at spatial and temporal scales that are unavailable

Complexity and simplification in understanding recruitment in benthic populations

KAUST Repository

Pineda, Jesús

2008-11-13

Research of complex systems and problems, entities with many dependencies, is often reductionist. The reductionist approach splits systems or problems into different components, and then addresses these components one by one. This approach has been used in the study of recruitment and population dynamics of marine benthic (bottom-dwelling) species. Another approach examines benthic population dynamics by looking at a small set of processes. This approach is statistical or model-oriented. Simplified approaches identify "macroecological" patterns or attempt to identify and model the essential, "first-order" elements of the system. The complexity of the recruitment and population dynamics problems stems from the number of processes that can potentially influence benthic populations, including (1) larval pool dynamics, (2) larval transport, (3) settlement, and (4) post-settlement biotic and abiotic processes, and larval production. Moreover, these processes are non-linear, some interact, and they may operate on disparate scales. This contribution discusses reductionist and simplified approaches to study benthic recruitment and population dynamics of bottom-dwelling marine invertebrates. We first address complexity in two processes known to influence recruitment, larval transport, and post-settlement survival to reproduction, and discuss the difficulty in understanding recruitment by looking at relevant processes individually and in isolation. We then address the simplified approach, which reduces the number of processes and makes the problem manageable. We discuss how simplifications and "broad-brush first-order approaches" may muddle our understanding of recruitment. Lack of empirical determination of the fundamental processes often results in mistaken inferences, and processes and parameters used in some models can bias our view of processes influencing recruitment. We conclude with a discussion on how to reconcile complex and simplified approaches. Although it

2005 IKONOS Image of St. John Utilized to derive Benthic Habitat Maps (IK_191555_0000000.img)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the nearshore marine environment of St. John, U.S. Virgin Islands were created by visual interpretation of remotely sensed imagery. The...

2005 IKONOS Image of St. John Utilized to derive Benthic Habitat Maps (IK_191556_0000000.img)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the nearshore marine environment of St. John, U.S. Virgin Islands were created by visual interpretation of remotely sensed imagery. The...

2000 IKONOS Image of St. John Utilized to derive Benthic Habitat Maps (IK_304713_0000000.img)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the nearshore marine environment of St. John, U.S. Virgin Islands were created by visual interpretation of remotely sensed imagery. The...

Baseline assessment of benthic communities of the Flower Garden Banks (2010 - 2013) using technical diving operations: 2011

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The work developed baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys employed diving,...

The use of benthic indicators in Europe: from the Water Framework Directive to the Marine Strategy Framework Directive.

Science.gov (United States)

Van Hoey, Gert; Borja, Angel; Birchenough, Silvana; Buhl-Mortensen, Lene; Degraer, Steven; Fleischer, Dirk; Kerckhof, Francis; Magni, Paolo; Muxika, Iñigo; Reiss, Henning; Schröder, Alexander; Zettler, Michael L

2010-12-01

The Water Framework Directive (WFD) and the Marine Strategy Framework Directive (MSFD) are the European umbrella regulations for water systems. It is a challenge for the scientific community to translate the principles of these directives into realistic and accurate approaches. The aim of this paper, conducted by the Benthos Ecology Working Group of ICES, is to describe how the principles have been translated, which were the challenges and best way forward. We have tackled the following principles: the ecosystem-based approach, the development of benthic indicators, the definition of 'pristine' or sustainable conditions, the detection of pressures and the development of monitoring programs. We concluded that testing and integrating the different approaches was facilitated during the WFD process, which led to further insights and improvements, which the MSFD can rely upon. Expert involvement in the entire implementation process proved to be of vital importance. Copyright © 2010 Elsevier Ltd. All rights reserved.

?Altiarchaeales?: Uncultivated Archaea from the Subsurface

OpenAIRE

Probst, Alexander J.; Moissl-Eichinger, Christine

2015-01-01

Due to the limited cultivability of the vast majority of microorganisms, researchers have applied environmental genomics and other state-of-the-art technologies to gain insights into the biology of uncultivated Archaea and bacteria in their natural biotope. In this review, we summarize the scientific findings on a recently proposed order-level lineage of uncultivated Archaea called Altiarchaeales, which includes “Candidatus Altiarchaeum hamiconexum” as the most well-described representative. ...

How marine debris ingestion differs among megafauna species in a tropical coastal area.

Science.gov (United States)

Di Beneditto, Ana Paula Madeira; Awabdi, Danielle Rodrigues

2014-11-15

The marine debris ingested by megafauna species (Trichiurus lepturus, Chelonia mydas, Pontoporia blainvillei, and Sotalia guianensis) was recorded in a coastal area of southeastern Brazil (21-23°S). Marine debris was recorded in all species, mainly consisting of plastic material (flexible and hard plastics - clear, white, and colored- and nylon filaments). The 'pelagic predators' T. lepturus and S. guianesis showed the lowest percent frequencies of debris ingestion (0.7% and 1.3%, respectively), followed by the 'benthic predator' P. blainvillei (15.7%) and the 'benthic herbivorous C. mydas (59.2%). The debris found in C. mydas stomachs was opportunistically ingested during feeding activities on local macroalgal banks. In the study area, the benthic environment accumulates more anthropogenic debris than the pelagic environment, and benthic/demersal feeders are more susceptible to encounters and ingestion. The sub-lethal effects observed in C. mydas, such as intestinal obstruction due to hardened fecal material, should be considered a local conservation concern. Copyright © 2014 Elsevier Ltd. All rights reserved.

Baseline assessment of benthic communities of the Flower Garden Banks (2010 - 2013) using technical diving operations: 2011

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

Pacific Reef Assessment and Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, including Marine Debris Sightings, of the U.S. Pacific Reefs from 2000 to 2012

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Differentiating leucine incorporation of Archaea and Bacteria throughout the water column of the eastern Atlantic using metabolic inhibitors

OpenAIRE

Yokokawa, Taichi; Sintes, Eva; de Corte, Daniele; Olbrich, Kerstin; Herndl, Gerhard J.

2012-01-01

The abundance (based on catalyzed reporter deposition-fluorescence in situ hybrid ization, CARD-FISH) and leucine incorporation rates of Archaea and Bacteria were determined throughout the water column in the eastern Atlantic. Bacteria dominated throughout the water column, although their contribution to total prokaryotic abundance in the bathypelagic layer (1000 to 4000 m depth) was lower than in the surface and mesopelagic layers (0 to 1000 m depth). While marine Crenarchaeota Group I (MCG ...

Salt tolerance of estuarine benthic macroalgae in the Kattegat-Baltic Sea area

DEFF Research Database (Denmark)

Larsen, A.; Sand-Jensen, K.

2006-01-01

Tolerance of benthic marine macroalgae to low salinities is believed to be a main determinant of their vertical distribution across the marine coastline and their horizontal distribution from oceanic regions into low-saline bays, fjords and estuaries. Salt tolerance should also be important......, Denmark (salinity: 16 psu, tide 10 cm) to maintain photosynthesis after 4 days exposure to declining salinities (16 to 0 psu). Overall, the algal community had a high short-term tolerance to low salinities because 35 of 44 species maintained more than half the photosynthetic capacity at salinities lower...

Protein Ser/Thr/Tyr phosphorylation in the Archaea.

Science.gov (United States)

Kennelly, Peter J

2014-04-04

The third domain of life, the Archaea (formerly Archaebacteria), is populated by a physiologically diverse set of microorganisms, many of which reside at the ecological extremes of our global environment. Although ostensibly prokaryotic in morphology, the Archaea share much closer evolutionary ties with the Eukarya than with the superficially more similar Bacteria. Initial genomic, proteomic, and biochemical analyses have revealed the presence of "eukaryotic" protein kinases and phosphatases and an intriguing set of serine-, threonine-, and tyrosine-phosphorylated proteins in the Archaea that may offer new insights into this important regulatory mechanism.

Energetic constraints, size gradients, and size limits in benthic marine invertebrates.

Science.gov (United States)

Sebens, Kenneth P

2002-08-01

Populations of marine benthic organisms occupy habitats with a range of physical and biological characteristics. In the intertidal zone, energetic costs increase with temperature and aerial exposure, and prey intake increases with immersion time, generating size gradients with small individuals often found at upper limits of distribution. Wave action can have similar effects, limiting feeding time or success, although certain species benefit from wave dislodgment of their prey; this also results in gradients of size and morphology. The difference between energy intake and metabolic (and/or behavioral) costs can be used to determine an energetic optimal size for individuals in such populations. Comparisons of the energetic optimal size to the maximum predicted size based on mechanical constraints, and the ensuing mortality schedule, provides a mechanism to study and explain organism size gradients in intertidal and subtidal habitats. For species where the energetic optimal size is well below the maximum size that could persist under a certain set of wave/flow conditions, it is probable that energetic constraints dominate. When the opposite is true, populations of small individuals can dominate habitats with strong dislodgment or damage probability. When the maximum size of individuals is far below either energetic optima or mechanical limits, other sources of mortality (e.g., predation) may favor energy allocation to early reproduction rather than to continued growth. Predictions based on optimal size models have been tested for a variety of intertidal and subtidal invertebrates including sea anemones, corals, and octocorals. This paper provides a review of the optimal size concept, and employs a combination of the optimal energetic size model and life history modeling approach to explore energy allocation to growth or reproduction as the optimal size is approached.

Isoprenoid biosynthesis in Archaea - Biochemical and evolutionary implications

NARCIS (Netherlands)

Matsumi, Rie; Atomi, Haruyuki; Driessen, Arnold J. M.; van der Oost, John

Isoprenoids are indispensable for all types of cellular life in the Archaea, Bacteria, and Eucarya. These membrane-associated molecules are involved in a wide variety of vital biological functions, ranging from compartmentalization and stability, to protection and energy-transduction. In Archaea,

Benthic status of near-shore fishing grounds in the central Philippines and associated seahorse densities.

Science.gov (United States)

Marcus, J E; Samoilys, M A; Meeuwig, J J; Villongco, Z A D; Vincent, A C J

2007-09-01

Benthic status of 28 near-shore, artisanal, coral reef fishing grounds in the central Philippines was assessed (2000-2002) together with surveys of the seahorse, Hippocampus comes. Our measures of benthic quality and seahorse densities reveal some of the most degraded coral reefs in the world. Abiotic structure dominated the fishing grounds: 69% of the benthos comprised rubble (32%), sand/silt (28%) and dead coral (9%). Predominant biotic structure included live coral (12%) and Sargassum (11%). Rubble cover increased with increasing distance from municipal enforcement centers and coincided with substantial blast fishing in this region of the Philippines. Over 2 years, we measured a significant decrease in benthic 'heterogeneity' and a 16% increase in rubble cover. Poor benthic quality was concomitant with extremely low seahorse densities (524 fish per km(2)). Spatial management, such as marine reserves, may help to minimize habitat damage and to rebuild depleted populations of seahorses and other reef fauna.

Marine Benthic Habitats and Seabed Suitability Mapping for Potential Ocean Current Energy Siting Offshore Southeast Florida

Directory of Open Access Journals (Sweden)

Amanda Mulcan

2015-05-01

Full Text Available This study examines the legal framework for ocean current energy policy and regulation to develop a metric for assessing the biological and geological characteristics of a seabed area with respect to the siting of OCE devices, a framework of criteria by which to assess seabed suitability (seabed suitability framework that can facilitate the siting, and implementation of ocean current energy (OCE projects. Seafloor geology and benthic biological data were analyzed in conjunction with seafloor core sample geostatistical interpolation to locate suitable substrates for OCE anchoring. Existing submarine cable pathways were considered to determine pathways for power transmission cables that circumvent biologically sensitive areas. Suitability analysis indicates that areas east of the Miami Terrace and north of recently identified deep-sea coral mounds are the most appropriate for OCE siting due to abundance of sand/sediment substrate, existing underwater cable route access, and minimal biological presence (i.e., little to no benthic communities. Further reconnaissance requires higher resolution maps of geological substrate and benthic community locations to identify specific OCE development locations, classify benthic conditions, and minimize potentially negative OCE environmental impacts.

Investigating the effects of mobile bottom fishing on benthic biota: a systematic review protocol

NARCIS (Netherlands)

Hughes, K.M.; Kaiser, M.J.; Jennings, S.; Rijnsdorp, A.D.

2014-01-01

Background Mobile bottom fishing, such as trawling and dredging, is the most widespread direct human impact on marine benthic systems. Knowledge of the impacts of different gear types on different habitats, the species most sensitive to impacts and the potential for habitats to recover are often

Accuracy Assessment Sites (Mean Location) - Moderate-Depth Benthic Habitats of St. John, U.S. Virgin Islands (2009)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the moderate-depth marine environment of St. John, U.S. Virgin Islands were created using a combination of semi-automated classification and...

Multivariate benthic ecosystem functioning in the Arctic – benthic fluxes explained by environmental parameters in the southeastern Beaufort Sea

Directory of Open Access Journals (Sweden)

H. Link

2013-09-01

Full Text Available The effects of climate change on Arctic marine ecosystems and their biogeochemical cycles are difficult to predict given the complex physical, biological and chemical interactions among the ecosystem components. We studied benthic biogeochemical fluxes in the Arctic and the influence of short-term (seasonal to annual, long-term (annual to decadal and other environmental variability on their spatial distribution to provide a baseline for estimates of the impact of future changes. In summer 2009, we measured fluxes of dissolved oxygen, nitrate, nitrite, ammonia, soluble reactive phosphate and silicic acid at the sediment–water interface at eight sites in the southeastern Beaufort Sea at water depths from 45 to 580 m. The spatial pattern of the measured benthic boundary fluxes was heterogeneous. Multivariate analysis of flux data showed that no single or reduced combination of fluxes could explain the majority of spatial variation, indicating that oxygen flux is not representative of other nutrient sink–source dynamics. We tested the influence of eight environmental parameters on single benthic fluxes. Short-term environmental parameters (sinking flux of particulate organic carbon above the bottom, sediment surface Chl a were most important for explaining oxygen, ammonium and nitrate fluxes. Long-term parameters (porosity, surface manganese and iron concentration, bottom water oxygen concentrations together with δ13Corg signature explained most of the spatial variation in phosphate, nitrate and nitrite fluxes. Variation in pigments at the sediment surface was most important to explain variation in fluxes of silicic acid. In a model including all fluxes synchronously, the overall spatial distribution could be best explained (57% by the combination of sediment Chl a, phaeopigments, δ13Corg, surficial manganese and bottom water oxygen concentration. We conclude that it is necessary to consider long-term environmental variability along with

BENTHIC FORAMINIFERAL BIOSTRATIGRAPHY OF MALATYA OLIGO-MIOCENE SUCCESSION (EASTERN TAURIDS, EASTERN TURKEY

Directory of Open Access Journals (Sweden)

Fatma GEDİK

2015-10-01

Full Text Available The benthic foraminiferal biostratigraphy of Oligo-Miocene aged Muratlı and Petekkaya formations which crop out over wide regions around Akçadağ town, west of Malatya pro- vince in Eastern Taurids were revealed in this study. Systematical sampling was carried out in measured stratigraphical sections in four locations in order to perform stratigraphical and paleontological investigations. Benthic foraminifera taken from 182 hard rock samples were defined and three biozones were determined as; SBZ 21-22, belonging to Oligocene (Rupe- lian - Early Chattian, SBZ 23 (Late Chattian and SBZ 25 belonging to Lower Miocene in shallow marine deposits in the region. It was stated that the assemblage of planktic forami- nifer and nannoplankton which stratigraphically detected within Chattian - Burdigalian units in the succession most probably indicated Aquitanian age. Besides; Oligo-Miocene transition in the region was approved with this study based on biostratigraphical locations of benthic foraminiferal taxa.

Major methodological constraints to the assessment of environmental status based on the condition of benthic communities

Science.gov (United States)

Medeiros, João Paulo; Pinto, Vanessa; Sá, Erica; Silva, Gilda; Azeda, Carla; Pereira, Tadeu; Quintella, Bernardo; Raposo de Almeida, Pedro; Lino Costa, José; José Costa, Maria; Chainho, Paula

2014-05-01

The Marine Strategy Framework Directive (MSFD) was published in 2008 and requires Member States to take the necessary measures to achieve or maintain good environmental status in aquatic ecosystems by the year of 2020. The MSFD indicates 11 qualitative descriptors for environmental status assessment, including seafloor integrity, using the condition of the benthic community as an assessment indicator. Member States will have to define monitoring programs for each of the MSFD descriptors based on those indicators in order to understand which areas are in a Good Environmental Status and what measures need to be implemented to improve the status of areas that fail to achieve that major objective. Coastal and offshore marine waters are not frequently monitored in Portugal and assessment tools have only been developed very recently with the implementation of the Water Framework Directive (WFD). The lack of historical data and knowledge on the constraints of benthic indicators in coastal areas requires the development of specific studies addressing this issue. The major objective of the current study was to develop and test and experimental design to assess impacts of offshore projects. The experimental design consisted on the seasonal and interannual assessment of benthic invertebrate communities in the area of future implementation of the structures (impact) and two potential control areas 2 km from the impact area. Seasonal benthic samples were collected at nine random locations within the impact and control areas in two consecutive years. Metrics included in the Portuguese benthic assessment tool (P-BAT) were calculated since this multimetric tool was proposed for the assessment of the ecological status in Portuguese coastal areas under the WFD. Results indicated a high taxonomic richness in this coastal area and no significant differences were found between impact and control areas, indicating the feasibility of establishing adequate control areas in marine

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

Directory of Open Access Journals (Sweden)

Wolf Yuri I

2012-12-01

Full Text Available Abstract Background Collections of Clusters of Orthologous Genes (COGs provide indispensable tools for comparative genomic analysis, evolutionary reconstruction and functional annotation of new genomes. Initially, COGs were made for all complete genomes of cellular life forms that were available at the time. However, with the accumulation of thousands of complete genomes, construction of a comprehensive COG set has become extremely computationally demanding and prone to error propagation, necessitating the switch to taxon-specific COG collections. Previously, we reported the collection of COGs for 41 genomes of Archaea (arCOGs. Here we present a major update of the arCOGs and describe evolutionary reconstructions to reveal general trends in the evolution of Archaea. Results The updated version of the arCOG database incorporates 91% of the pangenome of 120 archaea (251,032 protein-coding genes altogether into 10,335 arCOGs. Using this new set of arCOGs, we performed maximum likelihood reconstruction of the genome content of archaeal ancestral forms and gene gain and loss events in archaeal evolution. This reconstruction shows that the last Common Ancestor of the extant Archaea was an organism of greater complexity than most of the extant archaea, probably with over 2,500 protein-coding genes. The subsequent evolution of almost all archaeal lineages was apparently dominated by gene loss resulting in genome streamlining. Overall, in the evolution of Archaea as well as a representative set of bacteria that was similarly analyzed for comparison, gene losses are estimated to outnumber gene gains at least 4 to 1. Analysis of specific patterns of gene gain in Archaea shows that, although some groups, in particular Halobacteria, acquire substantially more genes than others, on the whole, gene exchange between major groups of Archaea appears to be largely random, with no major ‘highways’ of horizontal gene transfer. Conclusions The updated collection

2009 Archaea: Ecology, Metabolism & Molecular Biology GRC

Energy Technology Data Exchange (ETDEWEB)

Furlow, Julie Maupin- [Univ. of Florida, Gainesville, FL (United States)

2009-07-26

Archaea, one of three major evolutionary lineages of life, are a fascinating and diverse group of microbes with deep roots overlapping those of eukaryotes. The focus of the 'Archaea: Ecology Metabolism & Molecular Biology' GRC conference expands on a number of emerging topics highlighting new paradigms in archaeal metabolism, genome function and systems biology; information processing; evolution and the tree of life; the ecology and diversity of archaea and their viruses; and industrial applications. The strength of this conference lies in its ability to couple a field with a rich history in high quality research with new scientific findings in an atmosphere of stimulating exchange. This conference remains an excellent opportunity for younger scientists to interact with world experts in this field.

Pacific Island Network Marine Fish Monitoring Dataset - Transects

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The benthic marine community in the Pacific Island Network (PACN) is a complex ecologic system and a diverse taxonomic environment, including algae and corals and...

Benthic indicators to use in Ecological Quality classification of Mediterranean soft bottom marine ecosystems, including a new Biotic Index

Directory of Open Access Journals (Sweden)

N. SIMBOURA

2002-12-01

Full Text Available A general scheme for approaching the objective of Ecological Quality Status (EcoQ classification of zoobenthic marine ecosystems is presented. A system based on soft bottom benthic indicator species and related habitat types is suggested to be used for testing the typological definition of a given water body in the Mediterranean. Benthic indices including the Shannon-Wiener diversity index and the species richness are re-evaluated for use in classification. Ranges of values and of ecological quality categories are given for the diversity and species richness in different habitat types. A new biotic index (BENTIX is proposed based on the relative percentages of three ecological groups of species grouped according to their sensitivity or tolerance to disturbance factors and weighted proportionately to obtain a formula rendering a five step numerical scale of ecological quality classification. Its advantage against former biotic indices lies in the fact that it reduces the number of the ecological groups involved which makes it simpler and easier in its use. The Bentix index proposed is tested and validated with data from Greek and western Mediterranean ecosystems and examples are presented. Indicator species associated with specific habitat types and pollution indicator species, scored according to their degree of tolerance to pollution, are listed in a table. The Bentix index is compared and evaluated against the indices of diversity and species richness for use in classification. The advantages of the BENTIX index as a classification tool for ECoQ include independence from habitat type, sample size and taxonomic effort, high discriminative power and simplicity in its use which make it a robust, simple and effective tool for application in the Mediterranean Sea.

Physicochemical Constraints on the Distribution of Benthic Foraminiferal Cell Morphology in the Modern Ocean

Science.gov (United States)

Keating-Bitonti, C.; Payne, J.

2016-02-01

Patterns in the sizes and shapes of marine organisms often occur across latitude and water depth gradients as a function of metabolic constraints dictated by the physical environment. However, the environmental factors that maintain these gradients in morphology remain incompletely understood because several oceanographic variables of biological importance are intimately correlated, such as temperature, dissolved oxygen concentration, particulate organic carbon (POC) flux, and carbonate saturation. Benthic foraminifera, a diverse group of single-celled protists that occur in nearly all marine environments, provide an ideal opportunity to test statistically among the various hypothesized environmental controls on cell morphology. Here, we use over 7,000 occurrences of 541 species of recent benthic foraminifera that span more than 60 degrees of latitude and 1,600 meters of water depth around the North American continental margin to assess the relative contributions of temperature, oxygen availability, carbonate saturation, and POC flux on their size and volume-to-surface area ratio in the modern ocean. Seawater temperature and dissolved oxygen concentrations best predict both measures of benthic foraminiferal cell morphology from the North American continental margin. These same variables also explain morphological variations from the Pacific continental margin in isolation, but dissolved oxygen is absent from the best model for the Atlantic. Because our results concur with predictions from first principles of cell physiology, we interpret these findings to reflect the physiological selective pressures on cell morphology as determined by the physical environment. Moreover, these findings suggest that warming waters and the expansion of hypoxic zones associated with anthropogenic-induced climate change are more likely to impact benthic foraminiferal communities than changes in primary productivity or ocean acidification.

The impact of genomics on research in diversity and evolution of archaea.

Science.gov (United States)

Mardanov, A V; Ravin, N V

2012-08-01

Since the definition of archaea as a separate domain of life along with bacteria and eukaryotes, they have become one of the most interesting objects of modern microbiology, molecular biology, and biochemistry. Sequencing and analysis of archaeal genomes were especially important for studies on archaea because of a limited availability of genetic tools for the majority of these microorganisms and problems associated with their cultivation. Fifteen years since the publication of the first genome of an archaeon, more than one hundred complete genome sequences of representatives of different phylogenetic groups have been determined. Analysis of these genomes has expanded our knowledge of biology of archaea, their diversity and evolution, and allowed identification and characterization of new deep phylogenetic lineages of archaea. The development of genome technologies has allowed sequencing the genomes of uncultivated archaea directly from enrichment cultures, metagenomic samples, and even from single cells. Insights have been gained into the evolution of key biochemical processes in archaea, such as cell division and DNA replication, the role of horizontal gene transfer in the evolution of archaea, and new relationships between archaea and eukaryotes have been revealed.

Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment.

Science.gov (United States)

Wurzbacher, Christian; Fuchs, Andrea; Attermeyer, Katrin; Frindte, Katharina; Grossart, Hans-Peter; Hupfer, Michael; Casper, Peter; Monaghan, Michael T

2017-04-08

Lake sediments harbor diverse microbial communities that cycle carbon and nutrients while being constantly colonized and potentially buried by organic matter sinking from the water column. The interaction of activity and burial remained largely unexplored in aquatic sediments. We aimed to relate taxonomic composition to sediment biogeochemical parameters, test whether community turnover with depth resulted from taxonomic replacement or from richness effects, and to provide a basic model for the vertical community structure in sediments. We analyzed four replicate sediment cores taken from 30-m depth in oligo-mesotrophic Lake Stechlin in northern Germany. Each 30-cm core spanned ca. 170 years of sediment accumulation according to 137 Cs dating and was sectioned into layers 1-4 cm thick. We examined a full suite of biogeochemical parameters and used DNA metabarcoding to examine community composition of microbial Archaea, Bacteria, and Eukaryota. Community β-diversity indicated nearly complete turnover within the uppermost 30 cm. We observed a pronounced shift from Eukaryota- and Bacteria-dominated upper layers (14 cm) dominated by enigmatic Archaea that typically occur in deep-sea sediments. Taxonomic replacement was the prevalent mechanism in structuring the community composition and was linked to parameters indicative of microbial activity (e.g., CO 2 and CH 4 concentration, bacterial protein production). Richness loss played a lesser role but was linked to conservative parameters (e.g., C, N, P) indicative of past conditions. By including all three domains, we were able to directly link the exponential decay of eukaryotes with the active sediment microbial community. The dominance of Archaea in deeper layers confirms earlier findings from marine systems and establishes freshwater sediments as a potential low-energy environment, similar to deep sea sediments. We propose a general model of sediment structure and function based on microbial characteristics and

Archaea: Evolution, Physiology, and Molecular Biology

DEFF Research Database (Denmark)

field, including an account by Carl Woese of his original discovery of the Archaea (until 1990 termed archaebacteria) and the initially mixed reactions of the scientific community. The review chapters and specialized articles address the emerging significance of the Archaea within a broader scientific......Introduced by Crafoord Prize winner Carl Woese, this volume combines reviews of the major developments in archaeal research over the past 10-15 years with more specialized articles dealing with important recent breakthroughs. Drawing on major themes presented at the June 2005 meeting held in Munich...

Community Structure of Denitrifiers, Bacteria, and Archaea along Redox Gradients in Pacific Northwest Marine Sediments by Terminal Restriction Fragment Length Polymorphism Analysis of Amplified Nitrite Reductase (nirS) and 16S rRNA Genes

Science.gov (United States)

Braker, Gesche; Ayala-del-Río, Héctor L.; Devol, Allan H.; Fesefeldt, Andreas; Tiedje, James M.

2001-01-01

Steep vertical gradients of oxidants (O2 and NO3−) in Puget Sound and Washington continental margin sediments indicate that aerobic respiration and denitrification occur within the top few millimeters to centimeters. To systematically explore the underlying communities of denitrifiers, Bacteria, and Archaea along redox gradients at distant geographic locations, nitrite reductase (nirS) genes and bacterial and archaeal 16S rRNA genes (rDNAs) were PCR amplified and analyzed by terminal restriction fragment length polymorphism (T-RFLP) analysis. The suitablility of T-RFLP analysis for investigating communities of nirS-containing denitrifiers was established by the correspondence of dominant terminal restriction fragments (T-RFs) of nirS to computer-simulated T-RFs of nirS clones. These clones belonged to clusters II, III, and IV from the same cores and were analyzed in a previous study (G. Braker, J. Zhou, L. Wu, A. H. Devol, and J. M. Tiedje, Appl. Environ. Microbiol. 66:2096–2104, 2000). T-RFLP analysis of nirS and bacterial rDNA revealed a high level of functional and phylogenetic diversity, whereas the level of diversity of Archaea was lower. A comparison of T-RFLPs based on the presence or absence of T-RFs and correspondence analysis based on the frequencies and heights of T-RFs allowed us to group sediment samples according to the sampling location and thus clearly distinguish Puget Sound and the Washington margin populations. However, changes in community structure within sediment core sections during the transition from aerobic to anaerobic conditions were minor. Thus, within the top layers of marine sediments, redox gradients seem to result from the differential metabolic activities of populations of similar communities, probably through mixing by marine invertebrates rather than from the development of distinct communities. PMID:11282647

Depth distribution of benthic dinoflagellates in the Caribbean Sea

Science.gov (United States)

Boisnoir, Aurélie; Pascal, Pierre-Yves; Cordonnier, Sébastien; Lemée, Rodolophe

2018-05-01

Monitoring of benthic dinoflagellates is usually conducted between sub-surface and 5 m depth, where these organisms are supposed to be in highest abundances. However, only few studies have focused on the small-scale depth distribution of benthic dinoflagellates. In the present study, abundances of dinoflagellates were evaluated on an invasive macrophyte Halophila stipulacea in two coastal sites in Guadeloupe (Caribbean Sea) along a depth gradient from sub-surface to 3 m at Gosier and until 20 m at Rivière Sens during the tropical wet and dry seasons. Species of genus Ostreopsis and Prorocentrum were the most abundant. Depth did not influence total dinoflagellate abundance but several genera showed particular depth-distribution preferences. The highest abundances of Ostreopsis and Gambierdiscus species were estimated preferentially in surface waters, whereas Coolia spp. were found in the same proportions but in deeper waters. Halophila stipulacea biomass was positively correlated with Ostreopsis spp. abundance. Our study suggests that sampling of benthic dinoflagellates should be conducted at different water depths taking into account the presence of the macroalgal substrate as well. In the Caribbean area, special attention should be addressed to the presence of H. stipulacea which tends to homogenize the marine landscape and represents a substrate for hosting dinoflagellate growth.

Viruses of the Archaea

DEFF Research Database (Denmark)

Basta, T.; Garrett, Roger Antony; Prangishvili,, David

2009-01-01

Double-stranded deoxyribonucleic acid (DNA) viruses that infect members of the third domain of life, the Archaea, are diverse and exceptional in both their morphotypes and their genomic properties. The majority of characterized species infect hyperthermophilic hosts and carry morphological featur...

Lipids of Prokaryotic Origin at the Base of Marine Food Webs

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Maria José Caramujo

2012-11-01

Full Text Available In particular niches of the marine environment, such as abyssal trenches, icy waters and hot vents, the base of the food web is composed of bacteria and archaea that have developed strategies to survive and thrive under the most extreme conditions. Some of these organisms are considered “extremophiles” and modulate the fatty acid composition of their phospholipids to maintain the adequate fluidity of the cellular membrane under cold/hot temperatures, elevated pressure, high/low salinity and pH. Bacterial cells are even able to produce polyunsaturated fatty acids, contrarily to what was considered until the 1990s, helping the regulation of the membrane fluidity triggered by temperature and pressure and providing protection from oxidative stress. In marine ecosystems, bacteria may either act as a sink of carbon, contribute to nutrient recycling to photo-autotrophs or bacterial organic matter may be transferred to other trophic links in aquatic food webs. The present work aims to provide a comprehensive review on lipid production in bacteria and archaea and to discuss how their lipids, of both heterotrophic and chemoautotrophic origin, contribute to marine food webs.

Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea.

Science.gov (United States)

Stieglmeier, Michaela; Mooshammer, Maria; Kitzler, Barbara; Wanek, Wolfgang; Zechmeister-Boltenstern, Sophie; Richter, Andreas; Schleper, Christa

2014-05-01

Soil emissions are largely responsible for the increase of the potent greenhouse gas nitrous oxide (N2O) in the atmosphere and are generally attributed to the activity of nitrifying and denitrifying bacteria. However, the contribution of the recently discovered ammonia-oxidizing archaea (AOA) to N2O production from soil is unclear as is the mechanism by which they produce it. Here we investigate the potential of Nitrososphaera viennensis, the first pure culture of AOA from soil, to produce N2O and compare its activity with that of a marine AOA and an ammonia-oxidizing bacterium (AOB) from soil. N. viennensis produced N2O at a maximum yield of 0.09% N2O per molecule of nitrite under oxic growth conditions. N2O production rates of 4.6±0.6 amol N2O cell(-1) h(-1) and nitrification rates of 2.6±0.5 fmol NO2(-) cell(-1) h(-1) were in the same range as those of the AOB Nitrosospira multiformis and the marine AOA Nitrosopumilus maritimus grown under comparable conditions. In contrast to AOB, however, N2O production of the two archaeal strains did not increase when the oxygen concentration was reduced, suggesting that they are not capable of denitrification. In (15)N-labeling experiments we provide evidence that both ammonium and nitrite contribute equally via hybrid N2O formation to the N2O produced by N. viennensis under all conditions tested. Our results suggest that archaea may contribute to N2O production in terrestrial ecosystems, however, they are not capable of nitrifier-denitrification and thus do not produce increasing amounts of the greenhouse gas when oxygen becomes limiting.

Graphite coated with manganese oxide/multiwall carbon nanotubes composites as anodes in marine benthic microbial fuel cells

Energy Technology Data Exchange (ETDEWEB)

Fu, Yubin, E-mail: ffyybb@ouc.edu.cn; Yu, Jian; Zhang, Yelong; Meng, Yao

2014-10-30

Highlights: • MnO{sub 2}/MWCNTs composites anode exhibits faster reaction kinetics. • The surfaces of MnO{sub 2}/MWCNTs composites anode exhibits better wettability. • A BMFC using the modified anode have excellent power output. - Abstract: Improving anode performance is of great significance to scale up benthic microbial fuel cells (BMFCs) for its marine application to drive oceanography instruments. In this study, manganese oxide (MnO{sub 2})/multiwall carbon nanotubes (MWCNTs) composites are prepared to be as novel anodes in the BMFCs via a direct redox reaction between permanganate ions (MnO{sub 4}{sup −}) and MWCNTs. The results indicate that the MnO{sub 2}/MWCNTs anode has a better wettability, greater kinetic activity and higher power density than that of the plain graphite (PG) anode. It is noted that the MnO{sub 2} (50% weight percent)/MWCNTs anode shows the highest electrochemical performance among them and will be a promising material for improving bioelectricity production of the BMFCs. Finally, a synergistic mechanism of electron transfer shuttle of Mn ions and their redox reactions in the interface between modified anode and bacteria biofilm are proposed to explain its excellent electrochemical performance.

Mesocosm validation of the marine No Effect Concentration of dissolved copper derived from a species sensivity distribution

NARCIS (Netherlands)

Foekema, E.M.; Kaag, N.H.B.M.; Kramer, K.J.M.; Long, K.

2015-01-01

The Predicted No Effect Concentration (PNEC) for dissolved copper based on the species sensitivity distribution (SSD) of 24 marine single species tests was validated in marine mesocosms. To achieve this, the impact of actively maintained concentrations of dissolved copper on a marine benthic and

Viruses of the Archaea

DEFF Research Database (Denmark)

Prangishvili,, David; Basta, Tamara; Garrett, Roger Antony

2016-01-01

Viruses infecting members of Archaea, the third domain of life, constitute an integral, yet unique part of the virosphere. Many of these viruses, specifically the species that infect hyperthermophilic hosts, display morphotypes – for example, bottle shaped, spindle shaped, droplet shaped, coil sh...

Methanogenic archaea

International Nuclear Information System (INIS)

Joblin, K.N.

2005-01-01

This chapter outlines procedures for enumerating, isolating, culturing and storing methanogens from ruminal digesta. The methanogens, a large and diverse group of Archaea, have unique features that separate them from the bacteria and the eukaryotes. They are the only recognized ruminal microbes belonging to the Archaea and are an integral part of the rumen microbial ecosystem. By scavenging hydrogen gas, methanogens play a key ecological role in keeping the partial pressure of hydrogen low so that fermentation can proceed efficiently. Although about 70 methanogenic species belonging to 2 1 genera have been identified from anaerobic environments, and a range of different methanogens co-exist in the rumen, to date only seven ruminal species have been isolated and purified. The population densities of methanogens in the rumen appear to be influenced by diet, and in particular by the fibre content of the diet. Sheep and cattle fed diets rich in concentrates contained 10 7 -10 8 and 10 8 - 10 9 ruminal methanogens/g, respectively, whereas sheep and dairy cows grazing pasture contained 10 9 -10 10 ruminal methanogens/g (G.N. Jarvis and K.N. Joblin, unpublished data). With careful application, methanogen population densities can readily be determined using culture methods. These appear to be similar to the population densities determined by culture-independent methods (P. Evans and K.N. Joblin, unpublished data)

Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity.

Directory of Open Access Journals (Sweden)

Andreas F Haas

Full Text Available Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in the lagoonal reefs of Moorea, French Polynesia. Rates of photosynthesis, respiration, and dissolved organic carbon (DOC release were assessed for several common benthic reef organisms from the backreef habitat. We assessed microbial community response to dissolved exudates of each benthic producer by measuring bacterioplankton growth, respiration, and DOC drawdown in two-day dark dilution culture incubations. Experiments were conducted for six benthic producers: three species of macroalgae (each representing a different algal phylum: Turbinaria ornata--Ochrophyta; Amansia rhodantha--Rhodophyta; Halimeda opuntia--Chlorophyta, a mixed assemblage of turf algae, a species of crustose coralline algae (Hydrolithon reinboldii and a dominant hermatypic coral (Porites lobata. Our results show that all five types of algae, but not the coral, exuded significant amounts of labile DOC into their surrounding environment. In general, primary producers with the highest rates of photosynthesis released the most DOC and yielded the greatest bacterioplankton growth; turf algae produced nearly twice as much DOC per unit surface area than the other benthic producers (14.0±2.8 µmol h⁻¹ dm⁻², stimulating rapid bacterioplankton growth (0.044±0.002 log10 cells h⁻¹ and concomitant oxygen drawdown (0.16±0.05 µmol L⁻¹ h⁻¹ dm⁻². Our results demonstrate that benthic reef algae can release a significant fraction of their photosynthetically-fixed carbon as DOC, these release rates vary by species, and this DOC is available to and consumed by reef associated microbes. These data provide compelling evidence that benthic primary producers differentially influence

Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts

Energy Technology Data Exchange (ETDEWEB)

Mason, Olivia U.; Di Meo-Savoie, Carol A.; Van Nostrand, Joy D.; Zhou, Jizhong; Fisk, Martin R.; Giovannoni, Stephen J.

2008-09-30

We used molecular techniques to analyze basalts of varying ages that were collected from the East Pacific Rise, 9 oN, from the rift axis of the Juan de Fuca Ridge, and from neighboring seamounts. Cluster analysis of 16S rDNA Terminal Restriction Fragment Polymorphism data revealed that basalt endoliths are distinct from seawater and that communities clustered, to some degree, based on the age of the host rock. This age-based clustering suggests that alteration processes may affect community structure. Cloning and sequencing of bacterial and archaeal 16S rRNA genes revealed twelve different phyla and sub-phyla associated with basalts. These include the Gemmatimonadetes, Nitrospirae, the candidate phylum SBR1093 in the c, andin the Archaea Marine Benthic Group B, none of which have been previously reported in basalts. We delineated novel ocean crust clades in the gamma-Proteobacteria, Planctomycetes, and Actinobacteria that are composed entirely of basalt associated microflora, and may represent basalt ecotypes. Finally, microarray analysis of functional genes in basalt revealed that genes coding for previously unreported processes such as carbon fixation, methane-oxidation, methanogenesis, and nitrogen fixation are present, suggesting that basalts harbor previously unrecognized metabolic diversity. These novel processes could exert a profound influence on ocean chemistry.

ADP-dependent Phosphofructokinases in Mesophilic and Thermophilic Methanogenic Archaea

NARCIS (Netherlands)

Verhees, C.H.; Tuininga, J.E.; Kengen, S.W.M.; Stams, A.J.M.; Oost, van der J.; Vos, de W.M.

2001-01-01

Phosphofructokinase (PFK) is a key enzyme of the glycolytic pathway in all domains of life. Two related PFKs, ATP-dependent and PPi-dependent PFK, have been distinguished in bacteria and eucarya, as well as in some archaea. Hyperthermophilic archaea of the order Thermococcales, including Pyrococcus

Functional Encyclopedia of Bacteria and Archaea

Energy Technology Data Exchange (ETDEWEB)

Blow, M. J.; Deutschbauer, A. M.; Hoover, C. A.; Lamson, J.; Lamson, J.; Price, M. N.; Waters, J.; Wetmore, K. M.; Bristow, J.; Arkin, A. P.

2013-03-20

Bacteria and Archaea exhibit a huge diversity of metabolic capabilities with fundamental importance in the environment, and potential applications in biotechnology. However, the genetic bases of these capabilities remain unclear due largely to an absence of technologies that link DNA sequence to molecular function. To address this challenge, we are developing a pipeline for high throughput annotation of gene function using mutagenesis, growth assays and DNA sequencing. By applying this pipeline to annotate gene function in 50 diverse microbes we hope to discover thousands of new gene functions and produce a proof of principle `Functional Encyclopedia of Bacteria and Archaea?.

Computation of radiation dose rate to non-human biota (Benthic and pelagic) from Nat.210Po

International Nuclear Information System (INIS)

Kamat, Rupali C.K.; Suresh, Sugandhi; Joshi, Vikram; Pulhan, Vandana

2018-01-01

Natural and anthropogenic factors are accountable for inclusion of radioactivity into the biota (flora and fauna). Among natural radionuclides 210 Po (t 1/2 =138 days) acquires importance due to it high radiotoxicity, with alpha particle energy of 5.3 MeV. It is a main contributor (90%) to the natural radiation dose received by most marine organisms and also to critical group doses from seafood consumption. Radioprotection in the past focused only on mankind with the assumption that human protection confers protection of non-human biota. However, in recent years International Commission on Radiological Protection has focused on protection of non-human biota. Radiological dose assessment to the biota is a challenging task and is an important issue of radiation protection. In line with this, the data generated in the present work is the baseline data to examine radiation dose due to naturally occurring 210 Po to the native marine species (benthic and pelagic) of the area rich in benthic and pelagic communities

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, including Marine Debris Sightings, of American Samoa from 2015-02-15 to 2015-03-23 (NCEI Accession 0157566)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Spatial analyses of benthic habitats to define coral reef ecosystem regions and potential biogeographic boundaries along a latitudinal gradient.

Directory of Open Access Journals (Sweden)

Brian K Walker

Full Text Available Marine organism diversity typically attenuates latitudinally from tropical to colder climate regimes. Since the distribution of many marine species relates to certain habitats and depth regimes, mapping data provide valuable information in the absence of detailed ecological data that can be used to identify and spatially quantify smaller scale (10 s km coral reef ecosystem regions and potential physical biogeographic barriers. This study focused on the southeast Florida coast due to a recognized, but understudied, tropical to subtropical biogeographic gradient. GIS spatial analyses were conducted on recent, accurate, shallow-water (0-30 m benthic habitat maps to identify and quantify specific regions along the coast that were statistically distinct in the number and amount of major benthic habitat types. Habitat type and width were measured for 209 evenly-spaced cross-shelf transects. Evaluation of groupings from a cluster analysis at 75% similarity yielded five distinct regions. The number of benthic habitats and their area, width, distance from shore, distance from each other, and LIDAR depths were calculated in GIS and examined to determine regional statistical differences. The number of benthic habitats decreased with increasing latitude from 9 in the south to 4 in the north and many of the habitat metrics statistically differed between regions. Three potential biogeographic barriers were found at the Boca, Hillsboro, and Biscayne boundaries, where specific shallow-water habitats were absent further north; Middle Reef, Inner Reef, and oceanic seagrass beds respectively. The Bahamas Fault Zone boundary was also noted where changes in coastal morphologies occurred that could relate to subtle ecological changes. The analyses defined regions on a smaller scale more appropriate to regional management decisions, hence strengthening marine conservation planning with an objective, scientific foundation for decision making. They provide a framework

Quantifying benthic nitrogen fluxes in Puget Sound, Washington: a review of available data

Science.gov (United States)

Sheibley, Richard W.; Paulson, Anthony J.

2014-01-01

Understanding benthic fluxes is important for understanding the fate of materials that settle to the Puget Sound, Washington, seafloor, as well as the impact these fluxes have on the chemical composition and biogeochemical cycles of marine waters. Existing approaches used to measure benthic nitrogen flux in Puget Sound and elsewhere were reviewed and summarized, and factors for considering each approach were evaluated. Factors for selecting an appropriate approach for gathering information about benthic flux include: availability of resources, objectives of projects, and determination of which processes each approach measures. An extensive search of literature was undertaken to summarize known benthic nitrogen fluxes in Puget Sound. A total of 138 individual flux chamber measurements and 38 sets of diffusive fluxes were compiled for this study. Of the diffusive fluxes, 35 new datasets were located, and new flux calculations are presented in this report. About 65 new diffusive flux calculations are provided across all nitrogen species (nitrate, NO3-; nitrite, NO2-; ammonium, NH4+). Data analysis of this newly compiled benthic flux dataset showed that fluxes beneath deep (greater than 50 meters) water tended to be lower than those beneath shallow (less than 50 meters) water. Additionally, variability in flux at the shallow depths was greater, possibly indicating a more dynamic interaction between the benthic and pelagic environments. The overall range of bottom temperatures from studies in the Puget Sound area were small (5–16 degrees Celsius), and only NH4+ flux showed any pattern with temperature. For NH4+, flux values and variability increased at greater than about 12 degrees Celsius. Collection of additional study site metadata about environmental factors (bottom temperature, depth, sediment porosity, sediment type, and sediment organic matter) will help with development of a broader regional understanding benthic nitrogen flux in the Puget Sound.

In-vitro archaeacidal activity of biocides against human-associated archaea.

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Saber Khelaifia

Full Text Available BACKGROUND: Several methanogenic archaea have been detected in the human intestinal microbiota. These intestinal archaea may contaminate medical devices such as colonoscopes. However, no biocide activity has been reported among these human-associated archaea. METHODOLOGY: The minimal archaeacidal concentration (MAC of peracetic acid, chlorhexidine, squalamine and twelve parent synthetic derivatives reported in this study was determined against five human-associated methanogenic archaea including Methanobrevibacter smithii, Methanobrevibacter oralis, Methanobrevibacter arboriphilicus, Methanosphaera stadtmanae, Methanomassiliicoccus luminyensis and two environmental methanogens Methanobacterium beijingense and Methanosaeta concilii by using a serial dilution technique in Hungates tubes. PRINCIPAL FINDINGS: MAC of squalamine derivative S1 was 0.05 mg/L against M. smithii strains, M. oralis, M. arboriphilicus, M. concilii and M. beijingense whereas MAC of squalamine and derivatives S2-S12 varied from 0.5 to 5 mg/L. For M. stadtmanae and M. luminyensis, MAC of derivative S1 was 0.1 mg/L and varied from 1 to ≥ 10 mg/L for squalamine and its parent derivatives S2-S12. Under the same experimental conditions, chlorhexidine and peracetic acid lead to a MAC of 0.2 and 1.5 mg/L, respectively against all tested archaea. CONCLUSIONS/SIGNIFICANCE: Squalamine derivative S1 exhibited a 10-200 higher archaeacidal activity than other tested squalamine derivatives, on the majority of human-associated archaea. As previously reported and due to their week corrosivity and their wide spectrum of antibacterial and antifungal properties, squalamine and more precisely derivative S1 appear as promising compounds to be further tested for the decontamination of medical devices contaminated by human-associated archaea.

The common ancestor of archaea and eukarya was not an archaeon.

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Forterre, Patrick

2013-01-01

It is often assumed that eukarya originated from archaea. This view has been recently supported by phylogenetic analyses in which eukarya are nested within archaea. Here, I argue that these analyses are not reliable, and I critically discuss archaeal ancestor scenarios, as well as fusion scenarios for the origin of eukaryotes. Based on recognized evolutionary trends toward reduction in archaea and toward complexity in eukarya, I suggest that their last common ancestor was more complex than modern archaea but simpler than modern eukaryotes (the bug in-between scenario). I propose that the ancestors of archaea (and bacteria) escaped protoeukaryotic predators by invading high temperature biotopes, triggering their reductive evolution toward the "prokaryotic" phenotype (the thermoreduction hypothesis). Intriguingly, whereas archaea and eukarya share many basic features at the molecular level, the archaeal mobilome resembles more the bacterial than the eukaryotic one. I suggest that selection of different parts of the ancestral virosphere at the onset of the three domains played a critical role in shaping their respective biology. Eukarya probably evolved toward complexity with the help of retroviruses and large DNA viruses, whereas similar selection pressure (thermoreduction) could explain why the archaeal and bacterial mobilomes somehow resemble each other.

Diversity of the DNA Replication System in the Archaea Domain

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Felipe Sarmiento

2014-01-01

Full Text Available The precise and timely duplication of the genome is essential for cellular life. It is achieved by DNA replication, a complex process that is conserved among the three domains of life. Even though the cellular structure of archaea closely resembles that of bacteria, the information processing machinery of archaea is evolutionarily more closely related to the eukaryotic system, especially for the proteins involved in the DNA replication process. While the general DNA replication mechanism is conserved among the different domains of life, modifications in functionality and in some of the specialized replication proteins are observed. Indeed, Archaea possess specific features unique to this domain. Moreover, even though the general pattern of the replicative system is the same in all archaea, a great deal of variation exists between specific groups.

Weak Compliance Undermines the Success of No-Take Zones in a Large Government-Controlled Marine Protected Area

KAUST Repository

Campbell, Stuart J.; Hoey, Andrew; Maynard, Jeffrey; Kartawijaya, Tasrif; Cinner, Joshua; Graham, Nicholas A. J.; Baird, Andrew H.

2012-01-01

The effectiveness of marine protected areas depends largely on whether people comply with the rules. We quantified temporal changes in benthic composition, reef fish biomass, and fishing effort among marine park zones (including no-take areas

Late Neogene marine incursions and the ancestral Gulf of California

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McDougall, K.

2008-01-01

The late Neogene section in the Salton Trough, California, and along the lower Colorado River in Arizona is composed of marine units bracketed by nonmarine units. Microfossils from the marine deposits indicate that a marine incursion inundated the Salton Trough during the late Miocene. Water depths increased rapidly in the Miocene and eventually flooded the region now occupied by the Colorado River as far north as Parker, Arizona. Marine conditions were restricted in the Pliocene as the Colorado River filled the Salton Trough with sediments and the Gulf of California assumed its present configuration. Microfossils from the early part of this incursion include a diverse assemblage of benthic foraminifers (Amphistegina gibbosa, Uvigerina peregrina, Cassidulina delicata, and Bolivina interjuncta), planktic foraminifers (Globigerinoides obliquus, G. extremus, and Globigerina nepenthes), and calcareous nannoplankton (Discoaster brouweri, Discoaster aff. Discoaster surculus, Sphenolithus abies, and S. neoabies), whereas microfossils in the final phase contain a less diverse assemblage of benthic foraminifers that are diagnostic of marginal shallow-marine conditions (Ammonia, Elphidium, Bolivina, Cibicides, and Quinqueloculina). Evidence of an earlier middle Miocene marine incursion comes from reworked microfossils found near Split Mountain Gorge in the Fish Creek Gypsum (Sphenolithus moriformis) and near San Gorgonio Pass (Cyclicargolithus floridanus and Sphenolithus heteromorphus and planktic foraminifers). The middle Miocene incursion may also be represented by the older marine sedimentary rocks encountered in the subsurface near Yuma, Arizona, where rare middle Miocene planktic foraminifers are found. ?? 2008 The Geological Society of America.

Diversity of Archaea in Brazilian savanna soils.

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Catão, E; Castro, A P; Barreto, C C; Krüger, R H; Kyaw, C M

2013-07-01

Although the richness of Bacteria and Fungi in Cerrado' soils has been reported, here we report, for the first time, the archaeal community in Cerrado's soils. DNA extracted from soil of two distinct vegetation types, a dense subtype of sensu strict (cerrado denso) and riverbank forest (mata de galeria), was used to amplify Archaea-specific 16S rRNA gene. All of the fragments sequenced were classified as Archaea into the phylum Thaumarchaeota, predominantly affiliated to groups I.1b and I.1c. Sequences affiliated to the group I.1a were found only in the soil from riverbank forest. Soils from 'cerrado denso' had greater Archaea richness than those from 'mata de galeria' based on the richness indexes and on the rarefaction curve. β-Diversity analysis showed significant differences between the sequences from the two soil areas studied because of their different thaumarchaeal group composition. These results provide information about the third domain of life from Cerrado soils.

Autecology of crenarchaeotal and bacterial clades in marine sediments and microbial mats

OpenAIRE

Kubo, Kyoko

2011-01-01

The focus of this thesis was the autecology of the Miscellaneous Crenarchaeotal Group (MCG), a phylum-level clade of Archaea occurring mostly in marine sediments. Sequences of MCG 16S rRNA genes have been retrieved from a wide range of marine and terrestrial habitats, such as deep subsurface sediments, hydrothermal sediments, mud volcanoes, estuaries, hot springs and freshwater lake sediments. MCG members seem to have no general preferences for a particular temperature or salinity. So far, no...

The unique features of glycolytic pathways in Archaea.

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Verhees, Corné H; Kengen, Servé W M; Tuininga, Judith E; Schut, Gerrit J; Adams, Michael W W; De Vos, Willem M; Van Der Oost, John

2003-10-15

An early divergence in evolution has resulted in two prokaryotic domains, the Bacteria and the Archaea. Whereas the central metabolic routes of bacteria and eukaryotes are generally well-conserved, variant pathways have developed in Archaea involving several novel enzymes with a distinct control. A spectacular example of convergent evolution concerns the glucose-degrading pathways of saccharolytic archaea. The identification, characterization and comparison of the glycolytic enzymes of a variety of phylogenetic lineages have revealed a mosaic of canonical and novel enzymes in the archaeal variants of the Embden-Meyerhof and the Entner-Doudoroff pathways. By means of integrating results from biochemical and genetic studies with recently obtained comparative and functional genomics data, the structure and function of the archaeal glycolytic routes, the participating enzymes and their regulation are re-evaluated.

Evidence for methane production by marine algae (Emiliana huxleyi) and its implication for the methane paradox in oxic waters

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Lenhart, K.; Klintzsch, T.; Langer, G.; Nehrke, G.; Bunge, M.; Schnell, S.; Keppler, F.

2015-12-01

Methane (CH4), an important greenhouse gas that affects radiation balance and consequently the earth's climate, still has uncertainties in its sinks and sources. The world's oceans are considered to be a source of CH4 to the atmosphere, although the biogeochemical processes involved in its formation are not fully understood. Several recent studies provided strong evidence of CH4 production in oxic marine and freshwaters but its source is still a topic of debate. Studies of CH4 dynamics in surface waters of oceans and large lakes have concluded that pelagic CH4 supersaturation cannot be sustained either by lateral inputs from littoral or benthic inputs alone. However, frequently regional and temporal oversaturation of surface waters occurs. This comprises the observation of a CH4 oversaturating state within the surface mixed layer, sometimes also termed the "oceanic methane paradox". In this study we considered marine algae as a possible direct source of CH4. Therefore, the coccolithophore Emiliania huxleyi was grown under controlled laboratory conditions and supplemented with two 13C-labelled carbon substrates, namely bicarbonate and a position-specific 13C-labelled methionine (R-S-13CH3). The CH4 production was 0.7 μg POC g-1 d-1, or 30 ng g-1 POC h-1. After supplementation of the cultures with the 13C labelled substrate, the isotope label was observed in headspace-CH4. Moreover, the absence of methanogenic archaea within the algal culture and the oxic conditions during CH4 formation suggest that marine algae such as Emiliania huxleyi contribute to the observed spatial and temporal restricted CH4 oversaturation in ocean surface waters.

Benthic Dinitrogen Fixation Traversing the Oxygen Minimum Zone Off Mauritania (NW Africa

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Jessica Gier

2017-12-01

Full Text Available Despite its potential to provide new nitrogen (N to the environment, knowledge on benthic dinitrogen (N2 fixation remains relatively sparse, and its contribution to the marine N budget is regarded as minor. Benthic N2 fixation is often observed in organic-rich sediments coupled to heterotrophic metabolisms, such as sulfate reduction. In the present study, benthic N2 fixation together with sulfate reduction and other heterotrophic metabolisms were investigated at six station between 47 and 1,108 m water depth along the 18°N transect traversing the highly productive upwelling region known as Mauritanian oxygen minimum zone (OMZ. Bottom water oxygen concentrations ranged between 30 and 138 μM. Benthic N2 fixation determined by the acetylene reduction assay was detected at all stations with highest rates (0.15 mmol m−2 d−1 on the shelf (47 and 90 m water depth and lowest rates (0.08 mmol m−2 d−1 below 412 m water depth. The biogeochemical data suggest that part of the N2 fixation could be linked to sulfate- and iron-reducing bacteria. Molecular analysis of the key functional marker gene for N2 fixation, nifH, confirmed the presence of sulfate- and iron-reducing diazotrophs. High N2 fixation further coincided with bioirrigation activity caused by burrowing macrofauna, both of which showed high rates at the shelf sites and low rates in deeper waters. However, statistical analyses proved that none of these processes and environmental variables were significantly correlated with benthic diazotrophy, which lead to the conclusion that either the key parameter controlling benthic N2 fixation in Mauritanian sediments remains unidentified or that a more complex interaction of control mechanisms exists. N2 fixation rates in Mauritanian sediments were 2.7 times lower than those from the anoxic Peruvian OMZ.

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, including Marine Debris Sightings, of the Hawaiian Archipelago from 2016-07-13 to 2016-09-26 (NCEI Accession 0157565)

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National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitats, Key Benthic Species, and Marine Debris Sightings of the Mariana Archipelago from 2017-05-04 to 2017-06-20 (NCEI Accession 0166629)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Diversity of halophilic archaea in fermented foods and human intestines and their application.

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Lee, Han-Seung

2013-12-01

Archaea are prokaryotic organisms distinct from bacteria in the structural and molecular biological sense, and these microorganisms are known to thrive mostly at extreme environments. In particular, most studies on halophilic archaea have been focused on environmental and ecological researches. However, new species of halophilic archaea are being isolated and identified from high salt-fermented foods consumed by humans, and it has been found that various types of halophilic archaea exist in food products by culture-independent molecular biological methods. In addition, even if the numbers are not quite high, DNAs of various halophilic archaea are being detected in human intestines and much interest is given to their possible roles. This review aims to summarize the types and characteristics of halophilic archaea reported to be present in foods and human intestines and to discuss their application as well.

Widespread Disulfide Bonding in Proteins from Thermophilic Archaea

OpenAIRE

Jorda, Julien; Yeates, Todd O.

2011-01-01

Disulfide bonds are generally not used to stabilize proteins in the cytosolic compartments of bacteria or eukaryotic cells, owing to the chemically reducing nature of those environments. In contrast, certain thermophilic archaea use disulfide bonding as a major mechanism for protein stabilization. Here, we provide a current survey of completely sequenced genomes, applying computational methods to estimate the use of disulfide bonding across the Archaea. Microbes belonging to the Crenarchaea...

Comparative Glycoproteome Analysis: Dynamics of Protein Glycosylation during Metamorphic Transition from Pelagic to Benthic Life Stages in Three Invertebrates

KAUST Repository

Chandramouli, Kondethimmanahalli; Zhang, Yu; Wong, Yue Him; Qian, Pei Yuan

2012-01-01

The life cycle of most benthic marine invertebrates has two distinct stages: the pelagic larval stage and the sessile juvenile stage. The transition between the larval stage and the juvenile stage is often abrupt and may be triggered by post

The Common Ancestor of Archaea and Eukarya Was Not an Archaeon

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Patrick Forterre

2013-01-01

Full Text Available It is often assumed that eukarya originated from archaea. This view has been recently supported by phylogenetic analyses in which eukarya are nested within archaea. Here, I argue that these analyses are not reliable, and I critically discuss archaeal ancestor scenarios, as well as fusion scenarios for the origin of eukaryotes. Based on recognized evolutionary trends toward reduction in archaea and toward complexity in eukarya, I suggest that their last common ancestor was more complex than modern archaea but simpler than modern eukaryotes (the bug in-between scenario. I propose that the ancestors of archaea (and bacteria escaped protoeukaryotic predators by invading high temperature biotopes, triggering their reductive evolution toward the “prokaryotic” phenotype (the thermoreduction hypothesis. Intriguingly, whereas archaea and eukarya share many basic features at the molecular level, the archaeal mobilome resembles more the bacterial than the eukaryotic one. I suggest that selection of different parts of the ancestral virosphere at the onset of the three domains played a critical role in shaping their respective biology. Eukarya probably evolved toward complexity with the help of retroviruses and large DNA viruses, whereas similar selection pressure (thermoreduction could explain why the archaeal and bacterial mobilomes somehow resemble each other.

Differentiating leucine incorporation of Archaea and Bacteria throughout the water column of the eastern Atlantic using metabolic inhibitors

OpenAIRE

Yokokawa, T.; Sintes, E.; de Corte, D.; Olbrich, K.; Herndl, G.J.

2012-01-01

The abundance (based on catalyzed reporter deposition-fluorescence in situ hybrid ization, CARD-FISH) and leucine incorporation rates of Archaea and Bacteria were determined throughout the water column in the eastern Atlantic. Bacteria dominated throughout the water column, although their contribution to total prokaryotic abundance in the bathypelagic layer (1000 to 4000 m depth) was lower than in the surface and mesopelagic layers (0 to 1000 m depth). While marine Crenarchaeota Group I (MCG ...

Baseline assessment of fish and benthic communities of the Flower Garden Banks (2010 - present) using remotely operated vehicle (ROV) survey methods: 2011

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National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

Expanding the World of Marine Bacterial and Archaeal Clades

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Yilmaz, Pelin; Yarza, Pablo; Rapp, Josephine Z.; Glöckner, Frank O.

2016-01-01

Determining which microbial taxa are out there, where they live, and what they are doing is a driving approach in marine microbial ecology. The importance of these questions is underlined by concerted, large-scale, and global ocean sampling initiatives, for example the International Census of Marine Microbes, Ocean Sampling Day, or Tara Oceans. Given decades of effort, we know that the large majority of marine Bacteria and Archaea belong to about a dozen phyla. In addition to the classically culturable Bacteria and Archaea, at least 50 “clades,” at different taxonomic depths, exist. These account for the majority of marine microbial diversity, but there is still an underexplored and less abundant portion remaining. We refer to these hitherto unrecognized clades as unknown, as their boundaries, names, and classifications are not available. In this work, we were able to characterize up to 92 of these unknown clades found within the bacterial and archaeal phylogenetic diversity currently reported for marine water column environments. We mined the SILVA 16S rRNA gene datasets for sequences originating from the marine water column. Instead of the usual subjective taxa delineation and nomenclature methods, we applied the candidate taxonomic unit (CTU) circumscription system, along with a standardized nomenclature to the sequences in newly constructed phylogenetic trees. With this new phylogenetic and taxonomic framework, we performed an analysis of ICoMM rRNA gene amplicon datasets to gain insights into the global distribution of the new marine clades, their ecology, biogeography, and interaction with oceanographic variables. Most of the new clades we identified were interspersed by known taxa with cultivated members, whose genome sequences are available. This result encouraged us to perform metabolic predictions for the novel marine clades using the PICRUSt approach. Our work also provides an update on the taxonomy of several phyla and widely known marine clades as

Exopolysaccharides play a role in the swarming of the benthic bacterium Pseudoalteromonas sp. SM9913

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Ang eLiu

2016-04-01

Full Text Available Most marine bacteria secrete exopolysaccharide (EPS, which is important for bacterial survival in the marine environment. However, it is still unclear whether the self-secreted EPS is involved in marine bacterial motility. Here we studied the role of EPS in the lateral flagella-driven swarming motility of benthic bacterium Pseudoalteromonas sp. SM9913 (SM9913 by a comparison of wild SM9913 and ΔepsT, an EPS synthesis defective mutant. Reduction of EPS production in ΔepsT did not affect the growth rate or the swimming motility, but significantly decreased the swarming motility on a swarming plate, suggesting that the EPS may play a role in SM9913 swarming. However, the expression and assembly of lateral flagella in ΔepsT were not affected. Instead, ΔepsT had a different swarming behavior from wild SM9913. The swarming of ΔepsT did not have an obvious rapid swarming period, and its rate became much lower than that of wild SM9913 after 35 h incubation. An addition of surfactin or SM9913 EPS on the surface of the swarming plate could rescue the swarming level. These results indicate that the self-secreted EPS is required for the swarming of SM9913. This study widens our understanding of the function of the EPS of benthic bacteria.

Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria.

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Wegener, Gunter; Krukenberg, Viola; Riedel, Dietmar; Tegetmeyer, Halina E; Boetius, Antje

2015-10-22

The anaerobic oxidation of methane (AOM) with sulfate controls the emission of the greenhouse gas methane from the ocean floor. In marine sediments, AOM is performed by dual-species consortia of anaerobic methanotrophic archaea (ANME) and sulfate-reducing bacteria (SRB) inhabiting the methane-sulfate transition zone. The biochemical pathways and biological adaptations enabling this globally relevant process are not fully understood. Here we study the syntrophic interaction in thermophilic AOM (TAOM) between ANME-1 archaea and their consortium partner SRB HotSeep-1 (ref. 6) at 60 °C to test the hypothesis of a direct interspecies exchange of electrons. The activity of TAOM consortia was compared to the first ANME-free culture of an AOM partner bacterium that grows using hydrogen as the sole electron donor. The thermophilic ANME-1 do not produce sufficient hydrogen to sustain the observed growth of the HotSeep-1 partner. Enhancing the growth of the HotSeep-1 partner by hydrogen addition represses methane oxidation and the metabolic activity of ANME-1. Further supporting the hypothesis of direct electron transfer between the partners, we observe that under TAOM conditions, both ANME and the HotSeep-1 bacteria overexpress genes for extracellular cytochrome production and form cell-to-cell connections that resemble the nanowire structures responsible for interspecies electron transfer between syntrophic consortia of Geobacter. HotSeep-1 highly expresses genes for pili production only during consortial growth using methane, and the nanowire-like structures are absent in HotSeep-1 cells isolated with hydrogen. These observations suggest that direct electron transfer is a principal mechanism in TAOM, which may also explain the enigmatic functioning and specificity of other methanotrophic ANME-SRB consortia.

Mapping ecosystem services provided by benthic habitats in the European North Atlantic Ocean

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Ibon eGalparsoro

2014-07-01

Full Text Available Mapping and assessing the ecosystem services provided by benthic habitats are a highly valuable source of information for understanding their current and potential benefits to society. The main objective of this investigation is to assess and map the ecosystem services provided by benthic habitats of the European North Atlantic Ocean, in the context of Mapping and Assessment of Ecosystems and their Services (MAES programme, the European Biodiversity Strategy and the implementation of the Marine Strategy Framework Directive. In total, 62 habitats have been analysed in relation to 12 ecosystem services over 1.7 million km2. Results indicated that more than 90% of the mapped area provides biodiversity maintenance and food provision services; meanwhile grounds providing reproduction and nursery services are limited to half of the mapped area. Benthic habitats generally provide more services closer to shore than offshore and in shallower waters. This gradient is likely to be explained by difficult access (i.e. distance and depth and lack of scientific knowledge for most of the services provided by distant benthic habitats. This research has provided a first assessment of the benthic ecosystem services at Atlantic European scale, with the provision of ecosystem services maps and their general spatial distribution patterns. Related to the objectives of this research, the conclusions are: (i benthic habitats provide a diverse set of ecosystem services, being the food provision and biodiversity maintenance services the ones that are more extensively represented. In addition, other regulating and cultural services are provided in a more limited area; and (ii the ecosystem services assessment categories are significantly related to the distance to the coast and with depth (higher near the coast and in shallow waters.

Benthic Foraminifera, Food in the Deep Sea, and Limits to Bentho-Pelagic Coupling

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Thomas, E.; Boscolo-Galazzo, F.; Arreguin-Rodrigu, G. J.; Ortiz, S.; Alegret, L.

2015-12-01

The deep-sea is the largest habitat on Earth, contains highly diverse biota, but is very little known. Many of its abundant benthic biota (e.g., nematodes) are not preserved in the fossil record. Calcareous and agglutinated benthic foraminifera (unicellular eukaryotes, Rhizaria; efficient dispersers) and ostracodes (Animalia, Crustacea; non-efficient dispersers) are the most common organisms providing a fossil record of deep-sea environments. Very little food is supplied to the deep-sea, because organic matter produced by photosynthesis is largely degraded before it arrives at the seafloor. Only a few % of organic matter is carried to the ocean bottom by 'marine snow', with its particle size and behavior in the water column controlled by surface ecosystem structure, including type of dominant primary producers (diatoms, cyanobacteria). Food supply and its seasonality are generally seen as the dominant control on benthic assemblages (combined with oxygenation), providing bentho-pelagic coupling between primary and benthic productivity. Benthic foraminiferal assemblages (composition and density) thus are used widely to estimate past productivity, especially during episodes of global climate change, ocean acidification, and mass extinction of primary producers. We show that some environmental circumstances may result in interrupting bentho-pelagic coupling, e.g. through lateral supply of organic matter along continental margins (adding more refractory organic matter), through trophic focusing and/or fine particle winnowing on seamounts (giving an advantage to suspension feeders), and through carbonate undersaturation (giving advantage to infaunal over epifaunal calcifyers). In addition, increased remineralization of organic matter combined with increased metabolic rates may cause assemblages to reflect more oligotrophic conditions at stable primary productivity during periods of global warming. As a result, benthic foraminiferal accumulation rates must be carefully

Bioprospecting Archaea: Focus on Extreme Halophiles

KAUST Repository

Antunes, André ; Simõ es, Marta F.; Grö tzinger, Stefan W.; Eppinger, Jö rg; Braganç a, Judith; Bajic, Vladimir B.

2016-01-01

knowledge, and (c) utilization of Archaea in biotechnology. They are increasingly employed in fields as diverse as biocatalysis, biocomputing, bioplastic production, bioremediation, bioengineering, food, pharmaceuticals, and nutraceuticals. This chapter

The effect of UV-B radiation on photosynthesis and respiration of phytoplankton, benthic macroalgae and seagrasses.

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Larkum, A W; Wood, W F

1993-04-01

Several species of marine benthic algae, four species of phytoplankton and two species of seagrass have been subjected to ultraviolet B irradiation for varying lengths of time and the effects on respiration, photosynthesis and fluorescence rise kinetics studied. No effect on respiration was found. Photosynthesis was inhibited to a variable degree in all groups of plants after irradiation over periods of up to 1 h and variable fluorescence was also inhibited in a similar way. The most sensitive plants were phytoplankton and deep-water benthic algae. Intertidal benthic algae were the least sensitive to UV-B irradiation and this may be related to adaptation, through the accumulation of UV-B screening compounds, to high light/high UV-B levels. Inhibition of variable fluorescence (Fv) of the fluorescence rise curve was a fast and sensitive indicator of UV-B damage. Two plants studied, a brown alga and a seagrass, showed very poor recovery of Fv over a period of 32 h.

Perspectives on biotechnological applications of archaea

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Schiraldi, Chiara; Giuliano, Mariateresa; De Rosa, Mario

2002-01-01

Many archaea colonize extreme environments. They include hyperthermophiles, sulfur-metabolizing thermophiles, extreme halophiles and methanogens. Because extremophilic microorganisms have unusual properties, they are a potentially valuable resource in the development of novel biotechnological processes. Despite extensive research, however, there are few existing industrial applications of either archaeal biomass or archaeal enzymes. This review summarizes current knowledge about the biotechnological uses of archaea and archaeal enzymes with special attention to potential applications that are the subject of current experimental evaluation. Topics covered include cultivation methods, recent achievements in genomics, which are of key importance for the development of new biotechnological tools, and the application of wild-type biomasses, engineered microorganisms, enzymes and specific metabolites in particular bioprocesses of industrial interest. PMID:15803645

Genome-wide identification of SF1 and SF2 helicases from archaea.

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Chamieh, Hala; Ibrahim, Hiba; Kozah, Juliana

2016-01-15

Archaea microorganisms have long been used as model organisms for the study of protein molecular machines. Archaeal proteins are particularly appealing to study since archaea, even though prokaryotic, possess eukaryotic-like cellular processes. Super Family I (SF1) and Super Family II (SF2) helicase families have been studied in many model organisms, little is known about their presence and distribution in archaea. We performed an exhaustive search of homologs of SF1 and SF2 helicase proteins in 95 complete archaeal genomes. In the present study, we identified the complete sets of SF1 and SF2 helicases in archaea. Comparative analysis between archaea, human and the bacteria E. coli SF1 and SF2 helicases, resulted in the identification of seven helicase families conserved among representatives of the domains of life. This analysis suggests that these helicase families are highly conserved throughout evolution. We highlight the conserved motifs of each family and characteristic domains of the detected families. Distribution of SF1/SF2 families show that Ski2-like, Lhr, Sfth and Rad3-like helicases are ubiquitous among archaeal genomes while the other families are specific to certain archaeal groups. We also report the presence of a novel SF2 helicase specific to archaea domain named Archaea Specific Helicase (ASH). Phylogenetic analysis indicated that ASH has evolved in Euryarchaeota and is evolutionary related to the Ski2-like family with specific characteristic domains. Our study provides the first exhaustive analysis of SF1 and SF2 helicases from archaea. It expands the variety of SF1 and SF2 archaeal helicases known to exist to date and provides a starting point for new biochemical and genetic studies needed to validate their biological functions. Copyright © 2015 Elsevier B.V. All rights reserved.

Impact of marine pollution on living resources - Case studies on the effect of mining activity and organic enrichment of benthic fauna

Digital Repository Service at National Institute of Oceanography (India)

Ansari, Z.A.; Shirwaikar, P.

Mine rejects, organic effluents and domestic sewage are the three main items discharged in the Mandovi Estuary, Goa, India. Their impact on the benthic life was studied. Benthic samples in this estuary were collected at monthly intervals using van...

Impaired Short-Term Functioning of a Benthic Community from a Deep Norwegian Fjord Following Deposition of Mine Tailings and Sediments

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Lisa Mevenkamp

2017-05-01

Full Text Available The extraction of minerals from land-based mines necessitates the disposal of large amounts of mine tailings. Dumping and storage of tailings into the marine environment, such as fjords, is currently being performed without knowing the potential ecological consequences. This study investigated the effect of short-term exposure to different deposition depths of inert iron ore tailings (0.1, 0.5, and 3 cm and dead subsurface sediment (0.5 and 3 cm on a deep water (200 m fjord benthic assemblage in a microcosm experiment. Biotic and abiotic variables were measured to determine structural and functional changes of the benthic community following an 11 and 16 day exposure with tailings and dead sediment, respectively. Structural changes of macrofauna, meiofauna, and bacteria were measured in terms of biomass, density, community composition and mortality while measures of oxygen penetration depth, sediment community oxygen consumption and 13C-uptake and processing by biota revealed changes in the functioning of the system. Burial with mine tailings and natural sediments modified the structure and functioning of the benthic community albeit in a different way. Mine tailings deposition of 0.1 cm and more resulted in a reduced capacity of the benthic community to remineralize fresh 13C-labeled algal material, as evidenced by the reduced sediment community oxygen consumption and uptake rates in all biological compartments. At 3 cm of tailings deposition, it was evident that nematode mortality was higher inside the tailings layer, likely caused by reduced food availability. In contrast, dead sediment addition led to an increase in oxygen consumption and bacterial carbon uptake comparable to control conditions, thereby leaving deeper sediment layers anoxic and in turn causing nematode mortality at 3 cm deposition. This study clearly shows that even small levels (0.1 cm of instantaneous burial by mine tailings may significantly reduce benthic ecosystem

Assessment of Machine Learning Algorithms for Automatic Benthic Cover Monitoring and Mapping Using Towed Underwater Video Camera and High-Resolution Satellite Images

Directory of Open Access Journals (Sweden)

Hassan Mohamed

2018-05-01

Full Text Available Benthic habitat monitoring is essential for many applications involving biodiversity, marine resource management, and the estimation of variations over temporal and spatial scales. Nevertheless, both automatic and semi-automatic analytical methods for deriving ecologically significant information from towed camera images are still limited. This study proposes a methodology that enables a high-resolution towed camera with a Global Navigation Satellite System (GNSS to adaptively monitor and map benthic habitats. First, the towed camera finishes a pre-programmed initial survey to collect benthic habitat videos, which can then be converted to geo-located benthic habitat images. Second, an expert labels a number of benthic habitat images to class habitats manually. Third, attributes for categorizing these images are extracted automatically using the Bag of Features (BOF algorithm. Fourth, benthic cover categories are detected automatically using Weighted Majority Voting (WMV ensembles for Support Vector Machines (SVM, K-Nearest Neighbor (K-NN, and Bagging (BAG classifiers. Fifth, WMV-trained ensembles can be used for categorizing more benthic cover images automatically. Finally, correctly categorized geo-located images can provide ground truth samples for benthic cover mapping using high-resolution satellite imagery. The proposed methodology was tested over Shiraho, Ishigaki Island, Japan, a heterogeneous coastal area. The WMV ensemble exhibited 89% overall accuracy for categorizing corals, sediments, seagrass, and algae species. Furthermore, the same WMV ensemble produced a benthic cover map using a Quickbird satellite image with 92.7% overall accuracy.

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

Directory of Open Access Journals (Sweden)

Lindgren Annie R

2012-07-01

Full Text Available Abstract Background The marine environment is comprised of numerous divergent organisms living under similar selective pressures, often resulting in the evolution of convergent structures such as the fusiform body shape of pelagic squids, fishes, and some marine mammals. However, little is known about the frequency of, and circumstances leading to, convergent evolution in the open ocean. Here, we present a comparative study of the molluscan class Cephalopoda, a marine group known to occupy habitats from the intertidal to the deep sea. Several lineages bear features that may coincide with a benthic or pelagic existence, making this a valuable group for testing hypotheses of correlated evolution. To test for convergence and correlation, we generate the most taxonomically comprehensive multi-gene phylogeny of cephalopods to date. We then create a character matrix of habitat type and morphological characters, which we use to infer ancestral character states and test for correlation between habitat and morphology. Results Our study utilizes a taxonomically well-sampled phylogeny to show convergent evolution in all six morphological characters we analyzed. Three of these characters also correlate with habitat. The presence of an autogenic photophore (those relying upon autonomous enzymatic light reactions is correlated with a pelagic habitat, while the cornea and accessory nidamental gland correlate with a benthic lifestyle. Here, we present the first statistical tests for correlation between convergent traits and habitat in cephalopods to better understand the evolutionary history of characters that are adaptive in benthic or pelagic environments, respectively. Discussion Our study supports the hypothesis that habitat has influenced convergent evolution in the marine environment: benthic organisms tend to exhibit similar characteristics that confer protection from invasion by other benthic taxa, while pelagic organisms possess features that

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitat, Key Benthic Species, including Marine Debris Sightings, of the Pacific Remote Island Areas from 2015-01-26 to 2015-04-26 (NCEI Accession 0157564)

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National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

National Coral Reef Monitoring Program: Towed-diver Surveys of Benthic Habitats, Key Benthic Species, and Marine Debris Sightings of the Pacific Remote Island Areas from 2017-04-02 to 2017-04-20 (NCEI Accession 0164023)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Selenoproteins in Archaea and Gram-positive bacteria.

Science.gov (United States)

Stock, Tilmann; Rother, Michael

2009-11-01

Selenium is an essential trace element for many organisms by serving important catalytic roles in the form of the 21st co-translationally inserted amino acid selenocysteine. It is mostly found in redox-active proteins in members of all three domains of life and analysis of the ever-increasing number of genome sequences has facilitated identification of the encoded selenoproteins. Available data from biochemical, sequence, and structure analyses indicate that Gram-positive bacteria synthesize and incorporate selenocysteine via the same pathway as enterobacteria. However, recent in vivo studies indicate that selenocysteine-decoding is much less stringent in Gram-positive bacteria than in Escherichia coli. For years, knowledge about the pathway of selenocysteine synthesis in Archaea and Eukarya was only fragmentary, but genetic and biochemical studies guided by analysis of genome sequences of Sec-encoding archaea has not only led to the characterization of the pathways but has also shown that they are principally identical. This review summarizes current knowledge about the metabolic pathways of Archaea and Gram-positive bacteria where selenium is involved, about the known selenoproteins, and about the respective pathways employed in selenoprotein synthesis.

Marine litter in an EBSA (Ecologically or Biologically Significant Area) of the central Mediterranean Sea: Abundance, composition, impact on benthic species and basis for monitoring entanglement.

Science.gov (United States)

Consoli, Pierpaolo; Andaloro, Franco; Altobelli, Chiara; Battaglia, Pietro; Campagnuolo, Silvana; Canese, Simonepietro; Castriota, Luca; Cillari, Tiziana; Falautano, Manuela; Pedà, Cristina; Perzia, Patrizia; Sinopoli, Mauro; Vivona, Pietro; Scotti, Gianfranco; Esposito, Valentina; Galgani, Francois; Romeo, Teresa

2018-05-01

Marine litter is commonly observed everywhere in the ocean. In this study, we analyzed 17 km of video footage, collected by a Remotely Operated Vehicle (ROV) at depths ranging between 20 and 220 m, during 19 transects performed on the rocky banks of the Straits of Sicily. Recently, the Contracting Parties of the Convention on Biological Diversity (CBD) recognized this site as an Ecologically or Biologically Significant Area (EBSA). The research aim was to quantify the abundance of marine litter and its impact on benthic fauna. Litter density ranged from 0 items/100 m 2 to 14.02 items/100 m 2 with a mean (±standard error) of 2.13 (±0.84) items/100 m 2 . The observed average density was higher (5.2 items/100 m 2 ) at depths >100 m than at shallower depths (fishing lines contributed to 98.07% of the overall litter density, then representing the dominant source of marine debris. Litter interactions with fauna were frequently observed, with 30% of litter causing "entanglement/coverage" and 15% causing damage to sessile fauna. A total of 16 species showed interaction (entanglement/coverage or damage) with litter items and 12 of these are species of conservation concern according to international directives and agreements (CITES, Berne Convention, Habitat Directive, SPA/BD Protocol, IUCN Red List); we also observed 7 priority habitats of the SPA/BD Protocol. This research will support the implementation of monitoring "Harm" as recommended by the UN Environment/MAP Regional Plan on Marine Litter Management in the Mediterranean, and the Marine Strategy Framework Directive (MSFD). The institution of a SPAMI in the investigated area could represent a good management action for the protection of this hotspot of biodiversity and to achieve a Good Environmental Status (GES) for the marine environment by 2020, under the MSFD. Copyright © 2018 Elsevier Ltd. All rights reserved.

On the Response of Halophilic Archaea to Space Conditions

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Leuko, Stefan; Rettberg, Petra; Pontifex, Ashleigh L.; Burns, Brendan P.

2014-01-01

Microorganisms are ubiquitous and can be found in almost every habitat and ecological niche on Earth. They thrive and survive in a broad spectrum of environments and adapt to rapidly changing external conditions. It is of great interest to investigate how microbes adapt to different extreme environments and with modern human space travel, we added a new extreme environment: outer space. Within the last 50 years, technology has provided tools for transporting microbial life beyond Earth’s protective shield in order to study in situ responses to selected conditions of space. This review will focus on halophilic archaea, as, due to their ability to survive in extremes, they are often considered a model group of organisms to study responses to the harsh conditions associated with space. We discuss ground-based simulations, as well as space experiments, utilizing archaea, examining responses and/or resistance to the effects of microgravity and UV in particular. Several halophilic archaea (e.g., Halorubrum chaoviator) have been exposed to simulated and actual space conditions and their survival has been determined as well as the protective effects of halite shown. Finally, the intriguing potential of archaea to survive on other planets or embedded in a meteorite is postulated. PMID:25370029

On the Response of Halophilic Archaea to Space Conditions

Directory of Open Access Journals (Sweden)

Stefan Leuko

2014-02-01

Full Text Available Microorganisms are ubiquitous and can be found in almost every habitat and ecological niche on Earth. They thrive and survive in a broad spectrum of environments and adapt to rapidly changing external conditions. It is of great interest to investigate how microbes adapt to different extreme environments and with modern human space travel, we added a new extreme environment: outer space. Within the last 50 years, technology has provided tools for transporting microbial life beyond Earth’s protective shield in order to study in situ responses to selected conditions of space. This review will focus on halophilic archaea, as, due to their ability to survive in extremes, they are often considered a model group of organisms to study responses to the harsh conditions associated with space. We discuss ground-based simulations, as well as space experiments, utilizing archaea, examining responses and/or resistance to the effects of microgravity and UV in particular. Several halophilic archaea (e.g., Halorubrum chaoviator have been exposed to simulated and actual space conditions and their survival has been determined as well as the protective effects of halite shown. Finally, the intriguing potential of archaea to survive on other planets or embedded in a meteorite is postulated.

Benthic macrofaunal dynamics and environmental stress across a salt wedge Mediterranean estuary.

Science.gov (United States)

Nebra, Alfonso; Alcaraz, Carles; Caiola, Nuno; Muñoz-Camarillo, Gloria; Ibáñez, Carles

2016-06-01

The spatial distribution of benthic macroinvertebrate community in relation to environmental factors was studied along the Ebro Estuary (NE Iberian Peninsula), a salt wedge Mediterranean estuary. Both ordination methods and generalized additive models were performed to identify the different benthic assemblages and their relationship to abiotic factors. Our results showed a strong relationship between macrofaunal assemblages and the predominant environmental gradients (e.g. salinity); thus revealing spatial differences in their structure and composition. Two different stretches were identified, namely the upper (UE) and the lower Ebro Estuary (LE). UE showed riverine characteristics and hence was colonized by a freshwater community; whereas LE was influenced by marine intrusion and sustained a complex marine-origin community. However, within each stretch, water and sediment characteristics played an important role in explaining species composition differences among sampling stations. Moreover, outcomes suggested a total species replacement pattern, instead of the nestedness pattern usually associated with well-mixed temperate estuaries. The sharp species turnover together with the estuarine stratification point out that the Ebro Estuary is working, in terms of ecological boundaries, under an ecotone model. Finally, despite obvious differences with well mixed estuaries (i.e. lack of tidal influence, stratification and species turnover), the Ebro Estuary shares important ecological attributes with well-mixed temperate estuaries. Copyright © 2016 Elsevier Ltd. All rights reserved.

Deposition and benthic mineralization of organic carbon: A seasonal study from Faroe Islands

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á Norði, Gunnvør; Glud, Ronnie N.; Simonsen, Knud; Gaard, Eilif

2018-01-01

Seasonal variations in sedimentation and benthic mineralization of organic carbon (OC) were investigated in a Faroese fjord. Deposited particulate organic carbon (POC) was mainly of marine origin, with terrestrial material only accounting for rates were associated to the spring bloom. The dynamics in the benthic solute exchange were governed by stratification that isolated the bottom water during summer and intensified sediment resuspension during winter. The POC export from the euphotic zone could not sustain the benthic mineralization rate (10.8 mol C m- 2 yr- 1) and the calculated burial rate (9.8 mol C m- 2 yr- 1) of organic material in the central basin. This indicated considerable focusing of material in the central part of the fjord. This was supported by the fact that the measured benthic mineralization rate - in contrast to most investigations - actually increased with increasing water depth. In August, when mineralization was at its maximum, the dissolved inorganic carbon (DIC) release from the sediment increased by 2.2 mmol m- 2 d- 1 for every m increase in water depth at 30-60 m depth. Due to sediment focusing, the OC burial in the deepest part of the fjord was 9.8 mol C m- 2 yr- 1. This was 2.4 times higher than the average OC burial in the fjord, estimated from the total sedimentation, and benthic mineralization accounting for the water depth related changes in activity. The study in Kaldbaksfjørður underscore that fjords are important sites for long time OC burial, but emphasize the need for accounting for spatial variations when extrapolating results from a single or few stations to the scale of the entire fjord.

Archaea in metazoan diets: implications for food webs and biogeochemical cycling.

Science.gov (United States)

Thurber, Andrew R; Levin, Lisa A; Orphan, Victoria J; Marlow, Jeffrey J

2012-08-01

Although the importance of trophic linkages, including 'top-down forcing', on energy flow and ecosystem productivity is recognized, the influence of metazoan grazing on Archaea and the biogeochemical processes that they mediate is unknown. Here, we test if: (1) Archaea provide a food source sufficient to allow metazoan fauna to complete their life cycle; (2) neutral lipid biomarkers (including crocetane) can be used to identify Archaea consumers; and (3) archaeal aggregates are a dietary source for methane seep metazoans. In the laboratory, we demonstrated that a dorvilleid polychaete, Ophryotrocha labronica, can complete its life cycle on two strains of Euryarchaeota with the same growth rate as when fed bacterial and eukaryotic food. Archaea were therefore confirmed as a digestible and nutritious food source sufficient to sustain metazoan populations. Both strains of Euryarchaeota used as food sources had unique lipids that were not incorporated into O. labronica tissues. At methane seeps, sulfate-reducing bacteria that form aggregations and live syntrophically with anaerobic-methane oxidizing Archaea contain isotopically and structurally unique fatty acids (FAs). These biomarkers were incorporated into tissues of an endolithofaunal dorvilleid polychaete species from Costa Rica (mean bulk δ(13)C=-92±4‰; polar lipids -116‰) documenting consumption of archaeal-bacterial aggregates. FA composition of additional soft-sediment methane seep species from Oregon and California provided evidence that consumption of archaeal-bacterial aggregates is widespread at methane seeps. This work is the first to show that Archaea are consumed by heterotrophic metazoans, a trophic process we coin as 'archivory'.

Tracing the incorporation of carbon into benthic foraminiferal calcite following the Deepwater Horizon event.

Science.gov (United States)

Schwing, Patrick T; Chanton, Jeffrey P; Romero, Isabel C; Hollander, David J; Goddard, Ethan A; Brooks, Gregg R; Larson, Rebekka A

2018-06-01

Following the Deepwater Horizon (DWH) event in 2010, hydrocarbons were deposited on the continental slope in the northeastern Gulf of Mexico through marine oil snow sedimentation and flocculent accumulation (MOSSFA). The objective of this study was to test the hypothesis that benthic foraminiferal δ 13 C would record this depositional event. From December 2010 to August 2014, a time-series of sediment cores was collected at two impacted sites and one control site in the northeastern Gulf of Mexico. Short-lived radioisotopes ( 210 Pb and 234 Th) were employed to establish the pre-DWH, DWH, and post-DWH intervals. Benthic foraminifera (Cibicidoides spp. and Uvigerina spp.) were isolated from these intervals for δ 13 C measurement. A modest (0.2-0.4‰), but persistent δ 13 C depletion in the DWH intervals of impacted sites was observed over a two-year period. This difference was significantly beyond the pre-DWH (background) variability and demonstrated that benthic foraminiferal calcite recorded the depositional event. The longevity of the depletion in the δ 13 C record suggested that benthic foraminifera may have recorded the change in organic matter caused by MOSSFA from 2010 to 2012. These findings have implications for assessing the subsurface spatial distribution of the DWH MOSSFA event. Copyright © 2018 Elsevier Ltd. All rights reserved.

Bioavailability of sediment-bound contaminants to marine organisms

Energy Technology Data Exchange (ETDEWEB)

Brown, B. [Battelle/Marine Sciences Lab., Sequim, WA (United States)]|[Colby Coll., Waterville, ME (United States); Neff, J. [Battelle/Marine Sciences Lab., Sequim, WA (United States)]|[Battelle Ocean Sciences, Duxbury, MA (United States)

1993-09-01

The bioavailability of sediment-bound contaminants to marine organisms indicates that there exists a potential for transfer of these contaminants through marine food webs to commercial fisheries products consumed by humans. However, there has been relatively little effort to combine and synthesize data on chemical/biological interactions between benthic animals and seagrasses and the sediments in which they reside on the one hand, and on the chemistry of bioaccumulation on the other. This report provides a conceptual basis for an approach to bioavailability and biomagnification of sediment-bound contaminants that reviews biological and chemical approaches.

Pacific Reef Assessment and Monitoring Program: Towed-diver Surveys of Benthic Habitats, Key Benthic Species, and Marine Debris Sightings of the U.S. Pacific Reefs from 2000-09-09 to 2012-05-19 (NCEI Accession 0163745)

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National Oceanic and Atmospheric Administration, Department of Commerce — The towed-diver method is used to conduct benthic surveys, assessing large-scale disturbances (e.g., bleaching) and quantifying benthic components such as habitat...

Benthic foraminifera

Digital Repository Service at National Institute of Oceanography (India)

Saraswat, R.; Nigam, R.

(Nolet and Corliss, 1990). Differences in the abundance of oxygen-sensitive and dissolution-prone benthic foraminiferal species between the Last Glacial Maximum (LGM) and the Holocene in the abyssal waters of the southwestern Gulf of Mexico were used... (2009) Deep-sea benthic diversity linked to seasonality of pelagic productivity. Deep Sea Research Part I: Oceanographic Research Papers 56: 835-841. Culver S (1988) New foraminiferal depth zonation of the northwestern Gulf of Mexico. Palaios 3: 69...

Replacement of benthic communities in two Neoproterozoic-Cambrian subtropical-to-temperate rift basins, High Atlas and Anti-Atlas, Morocco

Science.gov (United States)

Clausen, Sébastien; Álvaro, J. Javier; Zamora, Samuel

2014-10-01

The ‘Cambrian explosion’ is often introduced as a major shift in benthic marine communities with a coeval decline of microbial consortia related to the diversification of metazoans and development of bioturbation (‘Agronomic Revolution’). Successive community replacements have been reported along with ecosystem diversification and increase in guild complexity from Neoproterozoic to Cambrian times. This process is recorded worldwide but with regional diachroneities, some of them directly controlled by the geodynamic conditions of sedimentary basins. The southern High Atlas and Anti-Atlas of Morocco record development of two rifts, Tonian (?) - early Cryogenian and latest Ediacarian-Cambrian in age, separated by the onset of the Pan-African Orogeny. This tectonically controlled, regional geodynamic change played a primary control on pattern and timing of benthic ecosystem replacements. Benthic communities include microbial consortia, archaeocyathan-thromboid reefal complexes, chancelloriid-echinoderm-sponge meadows, and deeper offshore echinoderm-dominated communities. Microbial consortia appeared in deeper parts of the Tonian (?) - early Cryogenian fluvio-deltaic progradational rift sequences, lacustrine environments of the Ediacaran Volcanic Atlasic Chain (Ouarzazate Supergroup) and the Ediacaran-Cambrian boundary interval, characterized by the peritidal-dominated Tifnout Member (Adoudou Formation). They persisted and were largely significant until Cambrian Age 3, as previous restricted marine conditions precluded the immigration of shelly metazoans in the relatively shallow epeiric parts of the Cambrian Atlas Rift. Successive Cambrian benthic communities were replaced as a result of distinct hydrodynamic and substrate conditions, which allow identification of biotic (e.g., antagonistic relationships between microbial consortia and echinoderms, and taphonomic feedback patterns in chancelloriid-echinoderm-sponge meadows) and abiotic (e.g., rifting

Residual concentrations of micropollutants in benthic mussels in the coastal areas of Bohai Sea, North China

International Nuclear Information System (INIS)

Liu Wenxin; Chen Jianglin; Lin Xiumei; Fan Yongsheng; Tao Shu

2007-01-01

Studies of heavy metals and organic pollutants in different benthic mussel species from Bohai Sea show that concentrations of Cd in mussels commonly exceed national biological quality standards. In addition, a site located in Laizhou Bay exhibits higher average concentrations of As, Hg and Pb with respect to the other sites. Residual levels of petroleum hydrocarbons at several sites in Liaodong Bay also exceed quality guidelines. Contents and compositional characteristics of DDT and its metabolites in mussels suggest the probability of recent inputs and potential ecological risks to the local benthic environment. - Residual Cd contents of mussels at many sites in Bohai Sea exceed national marine biological quality standard and compositions of DDT metabolites indicate recent inputs and potential risk

PROCEDURES FOR THE DERIVATION OF EQUILIBRIUM PARTITIONING SEDIMENT BENCHMARKS (ESBS) FOR THE PROTECTION OF BENTHIC ORGANISMS: COMPENDIUM OF TIER 2 VALUES FOR NONIONIC ORGANICS

Science.gov (United States)

This equilibrium partitioning sediment benchmark (ESB) document describes procedures to derive concentrations for 32 nonionic organic chemicals in sediment which are protective of the presence of freshwater and marine benthic organisms. The equilibrium partitioning (EqP) approach...

A Pliocene marine diatom δ18O record of terrestrial-marine feedbacks and orbitally-paced cryogenic brine formation in the McMurdo Dry Valleys

Science.gov (United States)

Dodd, J. P.; Abbott, T.; Gibbons, J. A.

2017-12-01

Orbital frequencies are well documented in a number of terrestrial and marine climate records throughout the Cenozoic; however, assessing the feedbacks and timing of terrestrial-marine systems on glacial-interglacial timescales is often challenging. This is particularly the case in high-latitude, near-shore environments where traditional proxy records like benthic foraminifera are absent. Here we present oxygen isotope (δ18O and δ17O) values from marine diatom silica in the mid-Pliocene (3.5 - 4.7Ma) section of the AND-1B core from McMurdo Sound, Antarctica. Diatom silica δ18O values range between +28.1 and +36.4‰ VSMOW. Over a range of temperatures (0 to 10°C) that reflect both growth and shallow (fall on a mixing line between marine and meteoric waters, which also supports our cryogenic brine hypothesis. The AND-1B δ18O values have an inverse relationship with the stacked benthic foraminifera δ18O record where lower δ18O values in the AND-1B diatom silica correspond with colder intervals, and we interpret variations in the diatom δ18O values as increased brine flux from the MDV to McMurdo Sound. Currently, subsurface brines in the MDV are hydrologically connected with McMurdo Sound. Density-driven transport of these brines from the MDV to the marine costal environments during the warm mid-Pliocene indicate a potentially overlooked terrestrial source of hypersaline waters. Although the lateral extent of these brines is not known, mixing between the terrestrial cryogenic brines and seawater may represent a significant flux of hypersaline water to the marine environment during warmer-than-present global conditions.

Global patterns in marine predatory fish

DEFF Research Database (Denmark)

van Denderen, Pieter Daniël; Lindegren, Martin; MacKenzie, Brian

2017-01-01

known. Here, we show how latitudinal differences in predatory fish can essentially be explained by the inflow of energy at the base of the pelagic and benthic food chain. A low productive benthic energy pathway favours large pelagic species, whereas equal productivities support large demersal......Large teleost (bony) fish are a dominant group of predators in the oceans and constitute a major source of food and livelihood for humans. These species differ markedly in morphology and feeding habits across oceanic regions; large pelagic species such as tunas and billfish typically occur...... in the tropics, whereas demersal species of gadoids and flatfish dominate boreal and temperate regions. Despite their importance for fisheries and the structuring of marine ecosystems, the underlying factors determining the global distribution and productivity of these two groups of teleost predators are poorly...

United States of America. Report 1 [Marine Radioecology. Current Research and Future Scope

International Nuclear Information System (INIS)

Nakatani, R.E.

1967-01-01

Biology Department's aquatic research activities are primarily in freshwater radioecology and not in marine radioecology. The major reason for this lack of marine work is geographical location of our laboratory on the banks of the Columbia River, roughly 300 miles from the ocean. Recently, however, we have completed some preliminary work with 65 Zn metabolism in Anonyx sp., a marine benthic amphipod. Lake some inland laboratories, we have found that limited marine work can be done by hauling in sea water. We have been able to maintain the amphipods in a reasonably healthy state in our laboratory for about four weeks

Regeneration and abnormality in benthic foraminifer Rosalina leei: Implications in reconstructing past salinity changes

Digital Repository Service at National Institute of Oceanography (India)

Kurtarkar, S.R.; Nigam, R.; Saraswat, R.; Linshy, V.N.

water, especially in regions where rivers meet the ocean. Benthic foraminifera, preferentially marine microorganisms with a hard calcareous or agglutinated exoskeleton known as the test, are one of the most abundant groups of microorganisms... temperature under incubators and under 12 hour light -12 hour dark condition throughout the experiment. In order to avoid evaporation, culture trays were wrapped in thin polythene film, immediately after changing the culture media. Culture media was changed...

Sensitivity of heterogeneous marine benthic habitats to subtle stressors.

Directory of Open Access Journals (Sweden)

Iván F Rodil

Full Text Available It is important to understand the consequences of low level disturbances on the functioning of ecological communities because of the pervasiveness and frequency of this type of environmental change. In this study we investigated the response of a heterogeneous, subtidal, soft-sediment habitat to small experimental additions of organic matter and calcium carbonate to examine the sensitivity of benthic ecosystem functioning to changes in sediment characteristics that relate to the environmental threats of coastal eutrophication and ocean acidification. Our results documented significant changes between key biogeochemical and sedimentary variables such as gross primary production, ammonium uptake and dissolved reactive phosphorus flux following treatment additions. Moreover, the application of treatments affected relationships between macrofauna communities, sediment characteristics (e.g., chlorophyll a content and biogeochemical processes (oxygen and nutrient fluxes. In this experiment organic matter and calcium carbonate showed persistent opposing effects on sedimentary processes, and we demonstrated that highly heterogeneous sediment habitats can be surprisingly sensitive to subtle perturbations. Our results have important biological implications in a world with relentless anthropogenic inputs of atmospheric CO2 and nutrients in coastal waters.

Experimental studies on californium bioavailability to marine benthic invertebrates

International Nuclear Information System (INIS)

Fowler, S.W.; Carvalho, F.P.; Aston, S.R.

1986-01-01

252 Cf is readily taken up by benthic invertebrates from sea water, reaching whole-body concentration factors of 763 in the polychaete Hermione hystrix, 220 in the shrimp Lysmata seticaudata, 665 in the crab Pilumnus hirtellus and 78 in the bivalve mollusc Venerupis decussata after 3 weeks exposure. Surface sorption plays a predominant role in the uptake process. Depuration in clean sea water was a relatively slow process. The shrimp Lysmata eliminated 252 Cf very rapidly due to moulting. Absorption coefficients for ingested 252 Cf were high, approx. 23% in crabs and approx. 97% in brittlestars. The absorbed fraction was excreted twice as fast from crabs as brittlestars. Exposure of organisms to labelled sediment resulted in low transfer factors that were species dependent. There is some evidence to suggest that uptake from sediments is primarily due to 252 Cf transfer from the pore water. Comparison of these results with published experimental data on other transuranic nuclides in the same or similar species suggests that californium bioavailability is roughly equivalent to that of plutonium and americium. (author)

Image subsampling and point scoring approaches for large-scale marine benthic monitoring programs

Science.gov (United States)

Perkins, Nicholas R.; Foster, Scott D.; Hill, Nicole A.; Barrett, Neville S.

2016-07-01

Benthic imagery is an effective tool for quantitative description of ecologically and economically important benthic habitats and biota. The recent development of autonomous underwater vehicles (AUVs) allows surveying of spatial scales that were previously unfeasible. However, an AUV collects a large number of images, the scoring of which is time and labour intensive. There is a need to optimise the way that subsamples of imagery are chosen and scored to gain meaningful inferences for ecological monitoring studies. We examine the trade-off between the number of images selected within transects and the number of random points scored within images on the percent cover of target biota, the typical output of such monitoring programs. We also investigate the efficacy of various image selection approaches, such as systematic or random, on the bias and precision of cover estimates. We use simulated biotas that have varying size, abundance and distributional patterns. We find that a relatively small sampling effort is required to minimise bias. An increased precision for groups that are likely to be the focus of monitoring programs is best gained through increasing the number of images sampled rather than the number of points scored within images. For rare species, sampling using point count approaches is unlikely to provide sufficient precision, and alternative sampling approaches may need to be employed. The approach by which images are selected (simple random sampling, regularly spaced etc.) had no discernible effect on mean and variance estimates, regardless of the distributional pattern of biota. Field validation of our findings is provided through Monte Carlo resampling analysis of a previously scored benthic survey from temperate waters. We show that point count sampling approaches are capable of providing relatively precise cover estimates for candidate groups that are not overly rare. The amount of sampling required, in terms of both the number of images and

Evolutionary insights from studies on viruses of hyperthermophilic archaea.

Science.gov (United States)

Prangishvili, David

2003-05-01

The morphological diversity of viruses which parasitize hyperthermophilic archaea thriving at temperatures > or = 80 degrees C appears to exceed that of viruses of prokaryotes living at lower temperatures. Based on assumptions of the existence of viruses in the prebiotic phase of evolution and hot origins of cellular life, we suggest that this remarkable diversity could have its source in ancestral diversity of viral morphotypes in hot environments. Attempts are made to trace evolutionary relationships of viruses of hyperthermophilic archaea with other viruses.

Checklist of the benthic marine and brackish Galician algae (NW Spain

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Bárbara, Ignacio

2005-06-01

Full Text Available We present an annotated checklist of the benthic marine and brackish algae of the Galician coasts (Spain based on literature records and new collections. This checklist includes 618 species: 118 Cyanophyta, 296 Rhodophyta, 127 Ochrophyta, and 77 Chlorophyta. The number of specific, infraspecific taxa, and stages is 643: 121 Cyanophyta, 309 Rhodophyta, 135 Ochrophyta, and 79 Chlorophyta. Hyella caespitosa var. nitida, Calothrix fasciculata, Gracilariopsis longissima, Compsonema minutum, and Sphacelaria tribuloides are new records for Galicia, and there are also some new provincial records. We state the presence of each species for Lugo (Lu, A Coruña (Co, and Pontevedra (Po provinces. The number of species found in Galicia is high, since 85% of the species recorded for the warm-temperate NE Atlantic Ocean grow in Galicia. Biogeographical comments comparing the Galician data with the neighboring areas of Britain and Ireland, Basque coast, Portugal, southern Iberian Peninsula, Canary Islands and Atlantic coast of Morocco are given. Finally, we present lists of cold-temperate, warm-temperate, Lusitanic Province endemics, and alien species growing in Galicia.Se presenta una lista comentada de las especies de algas bentónicas marinas y salobres de la costa de Galicia (España basada en citas bibliográficas y nuevos datos de los autores. La lista contiene 618 especies: 118 Cyanophyta, 296 Rhodophyta, 127 Ochrophyta y 77 Chlorophyta. El número de taxa específicos e infraespecíficos asciende a 643: 121 Cyanophyta, 309 Rhodophyta, 135 Ochrophyta y 79 Chlorophyta. Hyella caespitosa var. nitida, Calothrix fasciculata, Gracilariopsis longissima, Compsonema minutum y Sphacelaria tribuloides son nuevas citas para Galicia, y algunas nuevas citas provinciales. Para cada especie se especifica su presencia en las provincias de Lugo (Lu, A Coruña (Co y Pontevedra (Po. El número de especies encontradas en Galicia es elevado, ya que se conocen el 85% de las

Hyperspectral Imaging Sensors and the Marine Coastal Zone

Science.gov (United States)

Richardson, Laurie L.

2000-01-01

Hyperspectral imaging sensors greatly expand the potential of remote sensing to assess, map, and monitor marine coastal zones. Each pixel in a hyperspectral image contains an entire spectrum of information. As a result, hyperspectral image data can be processed in two very different ways: by image classification techniques, to produce mapped outputs of features in the image on a regional scale; and by use of spectral analysis of the spectral data embedded within each pixel of the image. The latter is particularly useful in marine coastal zones because of the spectral complexity of suspended as well as benthic features found in these environments. Spectral-based analysis of hyperspectral (AVIRIS) imagery was carried out to investigate a marine coastal zone of South Florida, USA. Florida Bay is a phytoplankton-rich estuary characterized by taxonomically distinct phytoplankton assemblages and extensive seagrass beds. End-member spectra were extracted from AVIRIS image data corresponding to ground-truth sample stations and well-known field sites. Spectral libraries were constructed from the AVIRIS end-member spectra and used to classify images using the Spectral Angle Mapper (SAM) algorithm, a spectral-based approach that compares the spectrum, in each pixel of an image with each spectrum in a spectral library. Using this approach different phytoplankton assemblages containing diatoms, cyanobacteria, and green microalgae, as well as benthic community (seagrasses), were mapped.

amoA Gene abundances and nitrification potential rates suggest that benthic ammonia-oxidizing bacteria and not Archaea dominate N cycling in the Colne Estuary, United Kingdom.

Science.gov (United States)

Li, Jialin; Nedwell, David B; Beddow, Jessica; Dumbrell, Alex J; McKew, Boyd A; Thorpe, Emma L; Whitby, Corinne

2015-01-01

Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw](-1) day(-1) in June, increasing to 37.4 μmol N gdw(-1) day(-1) in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw(-1) day(-1) in June, increasing to 11.7 μmol N gdw(-1) day(-1) in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Olympic Coast National Marine Sanctuary - hab110_0204b - Habitat polygons for survey area 0204b

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS). OCNMS has collected multibeam backscatter, multibeam...

Olympic Coast National Marine Sanctuary - hab110_0204a - Habitat polygons for area 110_0204a

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS). OCNMS has collected multibeam backscatter, multibeam...

Do Changes in Current Flow as a Result of Arrays of Tidal Turbines Have an Effect on Benthic Communities?

Science.gov (United States)

Kregting, Louise; Elsaesser, Bjoern; Kennedy, Robert; Smyth, David; O'Carroll, Jack; Savidge, Graham

2016-01-01

Arrays of tidal energy converters have the potential to provide clean renewable energy for future generations. Benthic communities may, however, be affected by changes in current speeds resulting from arrays of tidal converters located in areas characterised by strong currents. Current speed, together with bottom type and depth, strongly influence benthic community distributions; however the interaction of these factors in controlling benthic dynamics in high energy environments is poorly understood. The Strangford Lough Narrows, the location of SeaGen, the world's first single full-scale, grid-compliant tidal energy extractor, is characterised by spatially heterogenous high current flows. A hydrodynamic model was used to select a range of benthic community study sites that had median flow velocities between 1.5-2.4 m/s in a depth range of 25-30 m. 25 sites were sampled for macrobenthic community structure using drop down video survey to test the sensitivity of the distribution of benthic communities to changes in the flow field. A diverse range of species were recorded which were consistent with those for high current flow environments and corresponding to very tide-swept faunal communities in the EUNIS classification. However, over the velocity range investigated, no changes in benthic communities were observed. This suggested that the high physical disturbance associated with the high current flows in the Strangford Narrows reflected the opportunistic nature of the benthic species present with individuals being continuously and randomly affected by turbulent forces and physical damage. It is concluded that during operation, the removal of energy by marine tidal energy arrays in the far-field is unlikely to have a significant effect on benthic communities in high flow environments. The results are of major significance to developers and regulators in the tidal energy industry when considering the environmental impacts for site licences.

Anthropogenic impacts on marine ecosystems in Antarctica.

Science.gov (United States)

Aronson, Richard B; Thatje, Sven; McClintock, James B; Hughes, Kevin A

2011-03-01

Antarctica is the most isolated continent on Earth, but it has not escaped the negative impacts of human activity. The unique marine ecosystems of Antarctica and their endemic faunas are affected on local and regional scales by overharvesting, pollution, and the introduction of alien species. Global climate change is also having deleterious impacts: rising sea temperatures and ocean acidification already threaten benthic and pelagic food webs. The Antarctic Treaty System can address local- to regional-scale impacts, but it does not have purview over the global problems that impinge on Antarctica, such as emissions of greenhouse gases. Failure to address human impacts simultaneously at all scales will lead to the degradation of Antarctic marine ecosystems and the homogenization of their composition, structure, and processes with marine ecosystems elsewhere. © 2011 New York Academy of Sciences.

Morphological deformities of benthic foraminifera in response to nearshore pollution of the Red Sea, Egypt.

Science.gov (United States)

El-Kahawy, R; El-Shafeiy, M; Helal, S A; Aboul-Ela, N; El-Wahab, M Abd

2018-04-28

The Red Sea encompasses a wide range of tropical marine habitats that are stressed due to anthropogenic activities. The main anthropogenic activities are hydrocarbon exploration and important trading harbors. This work aims to assess the influence of the Red Sea coastal heavy metal contamination on the marine meiofauna along three sites (Ras Gharib, Safaga, and Quseir). Eight heavy metal (Cu, Cd, Zn, Pb, Cr, Co, Ni, and Mn) contents are considered in four benthic foraminiferal species (Elphidium striatopunctatum, Amphistegina lobifera, Amphisorus hemprichii, and Ammonia beccarii). Quseir Harbor showed the highest level of pollution followed by Safaga and Ras Gharib sites. The analyzed benthic foraminiferal tests displayed noteworthy high concentrations of Cd, Zn, and Pb in Quseir Harbor which could be attributed to the anthropogenic activities in the nearshore areas. Some foraminiferal tests exhibited abnormalities in their apertures, coiling, and shape of chambers. A comparison between normal and deformed foraminiferal tests revealed that the deformed ones are highly contaminated with elevated heavy metal contents such as Fe, Mn, Ni, and Cd. Statistics in addition to geo-accumulation and pollution load indices reveal a whistling alarm for the Quseir harbor. The present data are necessary to improve conservation and management of the Red Sea ecosystem in the near future.

Lipidomic Analysis: From Archaea to Mammals

Czech Academy of Sciences Publication Activity Database

Řezanka, Tomáš; Kolouchová, I.; Gharwalová, L.; Palyzová, Andrea; Sigler, Karel

2018-01-01

Roč. 53, č. 1 (2018), s. 5-25 ISSN 0024-4201 R&D Projects: GA ČR(CZ) GA17-00027S Institutional support: RVO:61388971 Keywords : Algae * Animals * Archaea Subject RIV: EE - Microbiology, Virology OBOR OECD: Microbiology Impact factor: 1.934, year: 2016

Heavy metals in benthic organisms from Todos os Santos Bay, Brazil

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GM. Amado-Filho

Full Text Available The marine ecosystems of Todos os Santos Bay (TSB, The State of Bahia, Brazil have been impacted by the presence on its coast of a large metropolitan area as well as of chemical and petrochemical activities. Despite its ecological importance, there is a lack of scientific information concerning metal contamination in TSB marine biota. Thus, we analyzed concentrations of metals in four species of marine benthic organisms (two seaweeds, Padina gymnospora and Sargassum sp. one seagrass, Halodule wrightii and one oyster, Crassostrea rhizophorae in three sites from the TSB region that have been most affected by industrial activities. The concentrations of Al, Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn were determined by Atomic Absorption Spectrophometry. The obtained data indicates that cadmium and copper in seaweeds, oysters and seagrass, as well as Ni concentrations in oysters, were in range of contaminated coastal areas. Cadmium and copper are available to organisms through suspended particles, dissolved fraction of water column and bottom sediment interstitial water. As oysters and other mollusks are used as food sources by the local population, the metal levels found in oysters in TSB may constitute a health risk for this population. Our results suggest implanting a heavy metals biomonitoring program in the TSB marine ecosystems.

Sediment impacts on marine sponges.

Science.gov (United States)

Bell, James J; McGrath, Emily; Biggerstaff, Andrew; Bates, Tracey; Bennett, Holly; Marlow, Joseph; Shaffer, Megan

2015-05-15

Changes in sediment input to marine systems can influence benthic environments in many ways. Sponges are important components of benthic ecosystems world-wide and as sessile suspension feeders are likely to be impacted by changes in sediment levels. Despite this, little is known about how sponges respond to changes in settled and suspended sediment. Here we review the known impacts of sedimentation on sponges and their adaptive capabilities, whilst highlighting gaps in our understanding of sediment impacts on sponges. Although the literature clearly shows that sponges are influenced by sediment in a variety of ways, most studies confer that sponges are able to tolerate, and in some cases thrive, in sedimented environments. Critical gaps exist in our understanding of the physiological responses of sponges to sediment, adaptive mechanisms, tolerance limits, and the particularly the effect of sediment on early life history stages. Copyright © 2015 Elsevier Ltd. All rights reserved.

Olympic Coast National Marine Sanctuary - hab122_0702 - Habitat polygons for HMPR-122-2007-02 survey

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS). OCNMS has collected side scan sonar, multibeam...

Anthropogenic infilling of a Bermudian sinkhole and its impact on sedimentation and benthic foraminifera in the adjacent anchialine cave environment

Directory of Open Access Journals (Sweden)

Jacquelyn N. Cresswell

2017-09-01

Full Text Available In the mid-20th century, an inland brackish pond from Bermuda, known as Eve’s Pond, was filled with marine sediment from an adjacent coastal lagoon. At this time, an eyewitness reported “…sediment billowing out of the Green Bay Cave for days…”, which is a marine-dominated anchialine cave located proximal to the former location of Eve’s Pond (~200 m. The purpose of this study was to evaluate the potential impact of this infilling event on cave sedimentation and benthic meiofaunal communities, as proxied by the unicellular protists foraminifera that remain preserved in the sediment record. Eight sediment cores were collected from an underwater passage in Green Bay Cave in a transect towards the location where Eve’s Pond was surveyed in 1901 CE. The sediment cores were analyzed for visual and density changes (photography, X-radiography, textural variability, benthic foraminifera fauna and diversity, and radiocarbon dating. The recovered sediment cores mostly sampled a late Holocene carbonate mud facies that had been described during previous research in the cave, with benthic foraminiferal assemblages post-dating the onset of seawater circulating between the saline groundwater flooding the cave and the adjacent Harrington Sound ~1,900 years ago. However, two cores located further into the cave (cores 13 and 17 contain a carbonate sand layer with lagoon foraminifera that is anomalous with respect to the Holocene depositional history of the cave and is most likely related to the mid-20th century infilling of Eve’s Pond. Examination of these two cores showed that after the infilling event, the community of benthic foraminifera rapidly reverted to pre-impact assemblages with foraminiferal stygophiles (e.g., Spirophthalmidium emaciatum, Sigmoilina tenuis, which were not displaced by new colonizers introduced into the cave by the dredge spoils. We caution that the results cannot be extrapolated to the pelagic crustacean community, but the

Benthic biodiversity and ecological gradients in the Seno Magdalena (Puyuhuapi Fjord, Chile)

Science.gov (United States)

Betti, F.; Bavestrello, G.; Bo, M.; Enrichetti, F.; Loi, A.; Wanderlingh, A.; Pérez-Santos, I.; Daneri, G.

2017-11-01

Due to its complex hydrological, geomorphological and climatic features, the Chilean fjords region is considered among the most productive areas of the world. The benthic fauna of this region accounts for more than 1600 species showing marked latitudinal biogeographic differences characterizing this as one of the most important hotspot of biodiversity of cold-temperate environments. Despite numerous studies have been conducted to depict the biological characteristics of the fjords, the present situation is strongly unbalanced towards specific taxa. Hence, this study takes into consideration a community approach, highlighting the distribution of six benthic assemblages thriving on vertical walls along the Seno Magdalena fjord (Aysen region). Underwater pictures were used to characterize the trends in abundance and diversity of the main taxa showing distinct responses to salinity and turbidity. Among the less tolerant taxa to high fresh water inputs there are encrusting algae, mainly found in the most external sites lashed by outer currents, far from the estuarine plume. The bathymetric zonation of the assemblages, instead, is characterized by a dense mussel belt in the first 10 m, within a thick layer of low-salinity, nutrient-enriched waters. Rich assemblages of sponges, brachiopods, gorgonians and scleractinians thrive in deeper, marine, clear waters. The evaluation of the ecological role of benthic species leads both to the definition of potential bioindicator taxa responding to anthropic disturbances and to the promotion of protected areas.

Benthic Foraminifera as bio-indicators of anthropogenic impacts in coastal environments: Acqua dei Corsari area case study (Palermo, Italy).

Science.gov (United States)

Musco, Marianna; Cuttitta, Angela; Bicchi, Erica; Quinci, Enza Maria; Sprovieri, Mario; Tranchida, Giorgio; Giaramita, Luigi; Traina, Anna; Salvagio Manta, Daniela; Gherardi, Serena; Mercurio, Pietro; Siragusa, Angelo; Mazzola, Salvatore

2017-04-15

This study investigates living benthic foraminiferal assemblages as bio-indicators of anthropogenic activities in a coastal area within the Gulf of Palermo (Sicily, Italy), affected by industrial and urban activities, and evaluates the environmental quality through the calibration of a Tolerant Species index (%TS std ). Sediments from 6 stations were sampled along a bathymetric transect from the coast to offshore. Sediment grain size, TOC, major, minor and trace elements and polycyclic aromatic hydrocarbons (PAHs) were compared to benthic foraminiferal assemblages and species at each station. Diversity and density of benthic foraminiferal assemblages were not affected by the presence of pollutants, while tolerant species increased with organic (TOC and PAHs) or chemical (As and Pb) concentrations. Moreover, the calibration of the %TS std formula to >125μm foraminiferal assemblage, gives a detailed description of environmental quality along the transect, representing a good and sensitive tool to evaluate marine coastal environment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Functional group diversity is key to Southern Ocean benthic carbon pathways.

Directory of Open Access Journals (Sweden)

David K A Barnes

Full Text Available High latitude benthos are globally important in terms of accumulation and storage of ocean carbon, and the feedback this is likely to have on regional warming. Understanding this ecosystem service is important but difficult because of complex taxonomic diversity, history and geography of benthic biomass. Using South Georgia as a model location (where the history and geography of benthic biology is relatively well studied we investigated whether the composition of functional groups were critical to benthic accumulation, immobilization and burial pathway to sequestration-and also aid their study through simplification of identification. We reclassified [1], [2] morphotype and carbon mass data to 13 functional groups, for each sample of 32 sites around the South Georgia continental shelf. We investigated the influence on carbon accumulation, immobilization and sequestration estimate by multiple factors including the compositions of functional groups. Functional groups showed high diversity within and between sites, and within and between habitat types. Carbon storage was not linked to a functional group in particular but accumulation and immobilization increased with the number of functional groups present and the presence of hard substrata. Functional groups were also important to carbon burial rate, which increased with the presence of mixed (hard and soft substrata. Functional groups showed high surrogacy for taxonomic composition and were useful for examining contrasting habitat categorization. Functional groups not only aid marine carbon storage investigation by reducing time and the need for team size and speciality, but also important to benthic carbon pathways per se. There is a distinct geography to seabed carbon storage; seabed boulder-fields are hotspots of carbon accumulation and immobilization, whilst the interface between such boulder-fields and sediments are key places for burial and sequestration.

Experimental Evaluation of Seaweeds as a Vector for Microplastics into Marine Food Webs.

Science.gov (United States)

Gutow, Lars; Eckerlebe, Antonia; Giménez, Luis; Saborowski, Reinhard

2016-01-19

The ingestion of microplastics has been shown for a great variety of marine organisms. However, benthic marine mesoherbivores such as the common periwinkle Littorina littorea have been largely disregarded in studies about the effects of microplastics on the marine biota, probably because the pathway for microplastics to this functional group of organisms was not obvious. In laboratory experiments we showed that the seaweed Fucus vesiculosus retains suspended microplastics on its surface. The numbers of microplastics that adhered to the algae correlated with the concentrations of suspended particles in the water. In choice feeding assays L. littorea did not distinguish between algae with adherent microplastics and clean algae without microplastics, indicating that the snails do not recognize solid nonfood particles in the submillimeter size range as deleterious. In periwinkles that were feeding on contaminated algae, microplastics were found in the stomach and in the gut. However, no microplastics were found in the midgut gland, which is the principle digestive organ of gastropods. Microplastics in the fecal pellets of the periwinkles indicate that the particles do not accumulate rapidly inside the animals but are mostly released with the feces. Our results provide the first evidence that seaweeds may represent an efficient pathway for microplastics from the water to marine benthic herbivores.

Add-on conservation benefits of marine territorial user rights fishery policies in central Chile.

Science.gov (United States)

Gelcich, Stefan; Godoy, Natalio; Prado, Luis; Castilla, Juan Carlos

2008-01-01

To combine the rational use of marine benthic resources and economic development of small-scale fishers, Chile passed legislation in 1991 establishing a comanagement policy that grants exclusive territorial user rights for fisheries (TURFs) to artisanal fisher organizations in well-defined inshore coastal areas, known as Management and Exploitation Areas for Benthic Resources (MEABRs). In general the policy has been proclaimed a management and economic success because benthic resource abundances have increased inside MEABRs in comparison with open-access areas. However, there is a lack of studies assessing the impact of this management policy on nontargeted subtidal species and community assemblages and the policy's implications for biodiversity and conservation. This study starts to fill this gap and links the allocation of TURFs for benthic resources with add-on conservation benefits for species that are not directly linked with the fishery policy. Comparative subtidal surveys inside vs. outside MEABRs were used to assess the effects of three MEABRs on managed targeted benthic species, biodiversity (species richness), and community assemblages in central Chile. Surveys focused exclusively on subtidal kelp forest habitats dominated by Lessonia trabeculata, spanning 4-12 m in depth and with similar levels of habitat complexity. The study comprised: (1) quantification of kelp forest complexity, (2) understory survey of sessile species, (3) quantification of conspicuous benthic macroinvertebrates, including those under management, and (4) quantification of reef-fish species inside the kelp habitat. Results showed population enhancement of target-managed invertebrates inside MEABRs. Moreover, reef-fish species were significantly more diverse and abundant inside MEABRs, and community assemblages of nontarget benthic invertebrates and reef fish were significantly different inside vs. outside MEABRs. The comanagement of inshore benthic resources in Chile, through MEABRs

Managing mangroves with benthic biodiversity in mind: Moving beyond roving banditry

Science.gov (United States)

Ellison, Aaron M.

2008-02-01

This review addresses mangrove management activities in the broader context of the diversity of the mangrove benthos. Goals for mangrove ecosystem management include silviculture, aquaculture, or 'ecosystem services' such as coastal protection. Silvicultural management of mangroves generally neglects the benthos, although benthic invertebrates may affect tree establishment and growth, and community composition of benthic invertebrates may be a reliable indicator of the state of managed mangrove forests. Similarly, mangrove aquaculture focuses on particular species with little attention paid either to impacts on other trophic levels or to feedbacks with the trees. Exploitation of mangrove-associated prawns, crabs, and molluscs has a total economic value > US $4 billion per year. These aquaculture operations still rely on wild-collected stock; world-wide patterns of exploitation fit the well-known process of 'roving banditry', where mobile agents move from location to location, rapidly exploiting and depleting local resources before moving on to other, as-yet unprotected grounds. Collection of brood stock and fishing for other external inputs required by aquaculture (e.g., 'trash fish') removes intermediate trophic levels from marine food webs, may destabilize them, and lead to secondary extinctions of higher-order predators. Increased attention being paid to the role of mangroves in coastal protection following the 2004 Indian Ocean tsunami provides an opportunity to reassess the relative merits of management focused on short-term economic gains. Managing for ecosystem services may ultimately preserve benthic biodiversity in mangrove ecosystems.

Diversity and activity of benthic microbial communities at the North Alex mud volcano, Eastern Mediterranean

Science.gov (United States)

Makarow, Dorothee; Feseker, Tomas; Schmitz, Ruth; Treude, Tina

2010-05-01

North Alex mud volcano, located on the upper slope of the western Nile deep-sea fan, is characterized by an active seepage center transporting pore fluids, hydrocarbons and gases from deep subsurface sources to the sediment-water interface. Surface sediments feature steep temperature gradient of 8.5°C m-1. We sampled the top 40 cm of the sediments at different locations between the center and rim of the mud volcano to study the diversity, activity, and physiological characteristics of benthic microorganisms. The sediments revealed the activity of anaerobic oxidation of methane coupled to sulfate reduction with a mesophilic temperature optimum. Organisms involved in the process include consortia of methanotrophic archaea (ANME-2 group) and an unknown bacterial partner. Besides methanotrophic organisms the sediments harbored a variety of other bacterial and archaeal groups - including potentially thermophilic bacteria that could be involved in sulfur cycling. This poster presentation will provide an overview of microbial activities and community compositions of North Alex mud volcano sediments.

Olympic Coast National Marine Sanctuary - hab110_0204c - Habitat polygons for survey area 110_0204c

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS). OCNMS has collected multibeam backscatter, multibeam...

Olympic Coast National Marine Sanctuary - area110_0204a - Survey footprint for area 110_0204a

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS).In 2002, approximately 42 km2 of multibeam bathymetry...

Olympic Coast National Marine Sanctuary - area110_0204c - Survey footprint of area 110_0204c

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS).In 2003, approximately 49 km2 of multibeam bathymetry...

Olympic Coast National Marine Sanctuary - area110_0204b - Survey footprint of area 110_0204b

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast National Marine Sanctuary (OCNMS).In 2003, approximately 49 km2 of multibeam bathymetry...

Effect factors for marine eutrophication in LCIA based on species sensitivity to hypoxia

DEFF Research Database (Denmark)

Cosme, Nuno Miguel Dias; Hauschild, Michael Zwicky

2016-01-01

Hypoxia is an important environmental stressor to marine species, especially in benthic coastal waters. Increasing anthropogenic emissions of nutrients and organic matter contribute to the depletion of dissolved oxygen (DO). Biotic sensitivity to low levels of DO is determined by the organisms...

Calcareous nannoplankton and benthic foraminiferal assemblages from the Nazare Canyon (Portuguese continental margin): Preliminary results

International Nuclear Information System (INIS)

Guerreiro, C; Oliveira, A; Rodrigues, A; Rosa, F; Cachao, M; Fatela, F

2009-01-01

Submarine canyons are assumed to play an important role in oceanic/neritic circulation, marine productivity and sedimentary processes, acting as preferential conduits between the littoral and deep oceanic domain. Here we present first results of a comparative micropalaeontological study on calcareous nannoplankton and benthic foraminifera from surface sediments from the surroundings of the upper Nazare Canyon (Portuguese continental margin) and from the shelf north of the canyon. Regardless of the difficulty to distinguish taphonomical from (palaeo)ecological effects in such a complex and still poorly known marine system, the first results suggest that the canyon's hydro-sedimentary dynamic regime act as a prolongation of the shore/inner shelf hydrodynamic conditions towards west, preventing deposition and/or preservation of the smaller and fragile species of calcareous nannoplankton (e.g. E. huxleyi and G. ericsonii) and enhancing the record of the larger and more opportunistic ones (e.g. G. oceanica); and disturbing benthic foraminiferal productivity and/or diversity, or their preservation in the fossil record. Both calcareous nannoplankton and benthic foraminifera are more abundant off the canyon's domain, suggesting that its highly energetic thalweg conditions are probably filtering the fossil record in the sediment. Still, preliminary results suggest that the occurrence of persistent physical phenomena related with the canyon's morphology and proximity to the coast (e.g. solitary internal waves) may be locally promoting favourable conditions for calcareous nannoplankton, as shown by high values of nannoliths, chlorophyll a and 19' hexanoyloxyfucoxantine (unpublished data) north of the canyon's head. It is our goal to test this hypothesis in the near future by (a) studying multicore and surficial sediments from more recent surveys, and (b) calibrating the sediment results with water column data presently in process at the Institute of Oceanography (IO).

Calcareous nannoplankton and benthic foraminiferal assemblages from the Nazare Canyon (Portuguese continental margin): Preliminary results

Energy Technology Data Exchange (ETDEWEB)

Guerreiro, C; Oliveira, A; Rodrigues, A [Division of Marine Geology, Portuguese Hydrographic Institute (IH), Rua das Trinas 49, 1249-093 Lisboa (Portugal); Rosa, F [CIACOMAR, Algarve University, Av. 16 de Julho s/n 8700-311 Olhao (Portugal); Cachao, M; Fatela, F [Geology Center and Geology Department, FCUL, Bloco C6, 3o Piso, sala 6.3.57 Campo Grande 1749-016 Lisboa (Portugal)], E-mail: catarina.guerreiro@hidrografico.pt

2009-01-01

Submarine canyons are assumed to play an important role in oceanic/neritic circulation, marine productivity and sedimentary processes, acting as preferential conduits between the littoral and deep oceanic domain. Here we present first results of a comparative micropalaeontological study on calcareous nannoplankton and benthic foraminifera from surface sediments from the surroundings of the upper Nazare Canyon (Portuguese continental margin) and from the shelf north of the canyon. Regardless of the difficulty to distinguish taphonomical from (palaeo)ecological effects in such a complex and still poorly known marine system, the first results suggest that the canyon's hydro-sedimentary dynamic regime act as a prolongation of the shore/inner shelf hydrodynamic conditions towards west, preventing deposition and/or preservation of the smaller and fragile species of calcareous nannoplankton (e.g. E. huxleyi and G. ericsonii) and enhancing the record of the larger and more opportunistic ones (e.g. G. oceanica); and disturbing benthic foraminiferal productivity and/or diversity, or their preservation in the fossil record. Both calcareous nannoplankton and benthic foraminifera are more abundant off the canyon's domain, suggesting that its highly energetic thalweg conditions are probably filtering the fossil record in the sediment. Still, preliminary results suggest that the occurrence of persistent physical phenomena related with the canyon's morphology and proximity to the coast (e.g. solitary internal waves) may be locally promoting favourable conditions for calcareous nannoplankton, as shown by high values of nannoliths, chlorophyll a and 19' hexanoyloxyfucoxantine (unpublished data) north of the canyon's head. It is our goal to test this hypothesis in the near future by (a) studying multicore and surficial sediments from more recent surveys, and (b) calibrating the sediment results with water column data presently in process at the Institute of

Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth.

Science.gov (United States)

Brown, Alastair; Thatje, Sven

2014-05-01

Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity-depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity-depth pattern over time. Thermal

Thermophilic anaerobic oxidation of methane by marine microbial consortia.

Science.gov (United States)

Holler, Thomas; Widdel, Friedrich; Knittel, Katrin; Amann, Rudolf; Kellermann, Matthias Y; Hinrichs, Kai-Uwe; Teske, Andreas; Boetius, Antje; Wegener, Gunter

2011-12-01

The anaerobic oxidation of methane (AOM) with sulfate controls the emission of the greenhouse gas methane from the ocean floor. AOM is performed by microbial consortia of archaea (ANME) associated with partners related to sulfate-reducing bacteria. In vitro enrichments of AOM were so far only successful at temperatures ≤25 °C; however, energy gain for growth by AOM with sulfate is in principle also possible at higher temperatures. Sequences of 16S rRNA genes and core lipids characteristic for ANME as well as hints of in situ AOM activity were indeed reported for geothermally heated marine environments, yet no direct evidence for thermophilic growth of marine ANME consortia was obtained to date. To study possible thermophilic AOM, we investigated hydrothermally influenced sediment from the Guaymas Basin. In vitro incubations showed activity of sulfate-dependent methane oxidation between 5 and 70 °C with an apparent optimum between 45 and 60 °C. AOM was absent at temperatures ≥75 °C. Long-term enrichment of AOM was fastest at 50 °C, yielding a 13-fold increase of methane-dependent sulfate reduction within 250 days, equivalent to an apparent doubling time of 68 days. The enrichments were dominated by novel ANME-1 consortia, mostly associated with bacterial partners of the deltaproteobacterial HotSeep-1 cluster, a deeply branching phylogenetic group previously found in a butane-amended 60 °C-enrichment culture of Guaymas sediments. The closest relatives (Desulfurella spp.; Hippea maritima) are moderately thermophilic sulfur reducers. Results indicate that AOM and ANME archaea could be of biogeochemical relevance not only in cold to moderate but also in hot marine habitats.

Benthic Ammonia Oxidizers Differ in Community Structure and Biogeochemical Potential Across a Riverine Delta

Directory of Open Access Journals (Sweden)

Julian eDamashek

2015-01-01

Full Text Available Nitrogen pollution in coastal zones is a widespread issue, particularly in ecosystems with urban or agricultural watersheds. California’s Sacramento-San Joaquin Delta, at the landward reaches of San Francisco Bay, is highly impacted by both agricultural runoff and sewage effluent, leading to chronically high nutrient loadings. In particular, the massive discharge of ammonium into the Sacramento River has altered this ecosystem by increasing ammonium concentrations and thus changing the stoichiometry of inorganic nitrogen stocks, with potential effects throughout the food web. To date, however, there has been little research examining N biogeochemistry or N-cycling microbial communities in this system. We report the first data on benthic ammonia-oxidizing microbial communities and potential nitrification rates for the Sacramento-San Joaquin Delta, focusing on the functional gene amoA (encoding the α-subunit of ammonia monooxygenase. There were stark regional differences in ammonia-oxidizing communities, with ammonia-oxidizing bacteria (AOB outnumbering ammonia-oxidizing archaea (AOA only in the ammonium-rich Sacramento River. High potential nitrification rates in the Sacramento River suggested these communities may be capable of oxidizing significant amounts of ammonium, compared to the San Joaquin River and the upper reaches of San Francisco Bay. Gene diversity also showed regional patterns, as well as phylogenetically unique ammonia oxidizers in the Sacramento River. The community structure and biogeochemical function of benthic ammonia oxidizers appears related to nutrient loadings. Unraveling the microbial ecology and biogeochemistry of N cycling pathways is a critical step toward understanding how such ecosystems respond to the changing environmental conditions wrought by human development and climate change.

Impacts of metal and metal oxide nanoparticles on marine organisms

International Nuclear Information System (INIS)

Baker, Tony J.; Tyler, Charles R.; Galloway, Tamara S.

2014-01-01

Increasing use of metal and metal oxide nanoparticles [Me(O)NPs] in products means many will inevitably find their way into marine systems. Their likely fate here is sedimentation following hetero-aggregation with natural organic matter and/or free anions, putting benthic, sediment-dwelling and filter feeding organisms most at risk. In marine systems, Me(O)NPs can absorb to micro-organisms with potential for trophic transfer following consumption. Filter feeders, especially bivalves, accumulate Me(O)NPs through trapping them in mucus prior to ingestion. Benthic in-fauna may directly ingest sedimented Me(O)NPs. In fish, uptake is principally via the gut following drinking, whilst Me(O)NPs caught in gill mucus may affect respiratory processes and ion transport. Currently, environmentally-realistic Me(O)NP concentrations are unlikely to cause significant adverse acute health problems, however sub-lethal effects e.g. oxidative stresses have been noted in many organisms, often deriving from dissolution of Ag, Cu or Zn ions, and this could result in chronic health impacts. -- Highlights: • Nanoparticle (NP) use increasing, and NPs ultimately discharged to marine systems. • Metal ion dissolution from NPs causes oxidative stress at relevant concentrations. • Bioaccumulation and trophic transfer of NPs likely at all levels of marine food webs. • Biofilms and filter feeders are major NP accumulators, but many Classes lack study. • Current release levels unlikely to cause chronic damage, but may be a future issue. -- Exposure to metal (oxide) nanoparticles causes sub-lethal effects in marine organisms, the extent of which is related principally to the organisms' feeding regime, habitat and lifestyle

A dataset on the species composition of amphipods (Crustacea) in a Mexican marine national park: Alacranes Reef, Yucatan

OpenAIRE

Paz,Carlos; Simões,Nuno; Pech,Daniel

2018-01-01

Abstract Background Alacranes Reef was declared as a National Marine Park in 1994. Since then, many efforts have been made to inventory its biodiversity. However, groups such as amphipods have been underestimated or not considered when benthic invertebrates were inventoried. Here we present a dataset that contributes to the knowledge of benthic amphipods ( Crustacea , Peracarida ) from the inner lagoon habitats from the Alacranes Reef National Park, the largest coral reef ecosystem in the Gul...

Viruses of the Archaea: a unifying view

DEFF Research Database (Denmark)

Prangishvili, David; Forterre, Patrick; Garrett, Roger Antony

2006-01-01

DNA viruses of the Archaea have highly diverse and often exceptionally complex morphotypes. Many have been isolated from geothermally heated hot environments, raising intriguing questions about their origins, and contradicting the widespread notion of limited biodiversity in extreme environments...

A small-scale, portable method for extracting microplastics from marine sediments.

Science.gov (United States)

Coppock, Rachel L; Cole, Matthew; Lindeque, Penelope K; Queirós, Ana M; Galloway, Tamara S

2017-11-01

Microplastics (plastic particles, 0.1 μm-5 mm in size) are widespread marine pollutants, accumulating in benthic sediments and shorelines the world over. To gain a clearer understanding of microplastic availability to marine life, and the risks they pose to the health of benthic communities, ecological processes and food security, it is important to obtain accurate measures of microplastic abundance in marine sediments. To date, methods for extracting microplastics from marine sediments have been disadvantaged by complexity, expense, low extraction efficiencies and incompatibility with very fine sediments. Here we present a new, portable method to separate microplastics from sediments of differing types, using the principle of density floatation. The Sediment-Microplastic Isolation (SMI) unit is a custom-built apparatus which consistently extracted microplastics from sediments in a single step, with a mean efficiency of 95.8% (±SE 1.6%; min 70%, max 100%). Zinc chloride, at a density of 1.5 g cm -3 , was deemed an effective and relatively inexpensive floatation media, allowing fine sediment to settle whilst simultaneously enabling floatation of dense polymers. The method was validated by artificially spiking sediment with low and high density microplastics, and its environmental relevance was further tested by extracting plastics present in natural sediment samples from sites ranging in sediment type; fine silt/clay (mean size 10.25 ± SD 3.02 μm) to coarse sand (mean size 149.3 ± SD 49.9 μm). The method presented here is cheap, reproducible and is easily portable, lending itself for use in the laboratory and in the field, eg. on board research vessels. By employing this method, accurate estimates of microplastic type, distribution and abundance in natural sediments can be achieved, with the potential to further our understanding of the availability of microplastics to benthic organisms. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All

Carotenoids from Marine Organisms: Biological Functions and Industrial Applications

Directory of Open Access Journals (Sweden)

Christian Galasso

2017-11-01

Full Text Available As is the case for terrestrial organisms, carotenoids represent the most common group of pigments in marine environments. They are generally biosynthesized by all autotrophic marine organisms, such as bacteria and archaea, algae and fungi. Some heterotrophic organisms also contain carotenoids probably accumulated from food or partly modified through metabolic reactions. These natural pigments are divided into two chemical classes: carotenes (such as lycopene and α- and β-carotene that are composed of hydrogen and carbon; xanthophylls (such as astaxanthin, fucoxanthin and lutein, which are constituted by hydrogen, carbon and oxygen. Carotenoids, as antioxidant compounds, assume a key role in the protection of cells. In fact, quenching of singlet oxygen, light capture and photosynthesis protection are the most relevant biological functions of carotenoids. The present review aims at describing (i the biological functions of carotenoids and their benefits for human health, (ii the most common carotenoids from marine organisms and (iii carotenoids having large success in pharmaceutical, nutraceutical and cosmeceutical industries, highlighting the scientific progress in marine species cultivation for natural pigments production.

Coverage hab108_0201 -- Habitat polygons for HMPR-108-2002-01 survey in Olympic Coast national marine sanctuary.

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat polygon coverages are being created for the Olympic Coast national marine sanctuary (OCNMS).ROV, towed camera sled, bathymetry data, sedimentary...

Sensitivity of the marine benthic copepod Tisbe biminiensis (copepoda, harpacticoida to potassium dichromate and sediment particle size

Directory of Open Access Journals (Sweden)

Cristiane M. V. Araújo-Castro

2009-03-01

Full Text Available For the future use of the marine benthic copepod Tisbe biminiensis in solid-phase sediment toxicological bioassays, the present study investigated the effect of muddy sediment from the Maracaípe estuary (northeastern Brazil, sediment particle size and the reference toxicant potassium dichromate on the species. Muddy sediment from Maracaípe can be used as control sediment, since it does not interfere in the copepod life-cycle and has metal contamination levels that are unlikely to produce any detrimental biological effects on benthic invertebrates. Neither survival nor fecundity was affected by grain size, suggesting that this species can be used with any kind of sediment from muddy to sandy. The sensitivity of T. biminiensis to K2Cr2O7 in acute tests was similar to that of other organisms. The LC50 (lethal concentration to 50% of the test organisms medium values for T. biminiensis were 7.51, 4.68 and 3.19 mg L-1 for Cr in 48, 72 and 96 h, respectively. These results suggest that T. biminiensis is a promising organism for use in solid-phase sediment toxicity assessments.Visando o uso futuro do copépodo marinho bentônico Tisbe biminiensis em bioensaios toxicológicos de sedimentos na fase sólida, o presente estudo investigou o efeito do sedimento lamoso do estuário de Maracaípe (Nordeste do Brasil. Foram considerados a granolometria e o tóxico de referência dicromato de potássio sobre a espécie. O sedimento lamoso de Maracaípe pode ser usado como controle, uma vez que não interfere no ciclo de vida do copépodo e possui níveis de contaminação de metais que não causariam efeitos biológicos em invertebrados bentônicos. Nem a sobrevivência ou fecundidade foi afetada pelo tamanho do grão, sugerindo que esta espécie pode ser usada com qualquer tipo de sedimento, de lama a areia. A sensibilidade de T. biminiensis ao K2Cr2O7 em testes agudos foi similar a de outros organismos. Os valores de CL50 (concentração letal a 50% dos

The functional significance of the spinose keel structure of benthic foraminifera: inferences from Miliolina cristata Millett, 1898 (Miliolida) from northeast Romania

Science.gov (United States)

Dumitriţa Dumitriu, Simina; Dubicka, Zofia; Ionesi, Viorel

2018-01-01

The paper presents Miocene (lower Sarmatian) benthic foraminifera from the FH3P1 Rădăuţi Core section from the northwestern part of the Moldavian Platform, Romania. Based on foraminiferal assemblages we infer sediments were deposited in shallow-water, including marine-marginal environments, of varying salinities from brackish to normal marine with some short and rather small sea-level changes. Moreover, we describe for the first time in the Moldavian Platform a very rare species, Miliolina cristata Millett, which presents a characteristic spinose keel. Based on a detailed study of the test morphology and its variability, observed in picked material as well as in thin sections, we discuss some palaeoecological aspects of these foraminifera. M. cristata probably does not constitute a distinctive species, but it is more probable that some miliolid taxa developed such an exoskeletal feature in response to new environmental conditions, such as more turbulent water. Accordingly, our study would support the thesis that one of the functions of the benthic foraminiferal spines is to stabilize foraminiferal tests found in sandy substrates from high-energy environments.

A comparison of the marine and estuarine benthic fauna of the nearshore regions of the Arabian Sea.

Digital Repository Service at National Institute of Oceanography (India)

Desai, B.N.; Kutty, M.K.

The distribution and abundance of the benthic fauna of the Arabian sea were studied in the nearshore region at a depth of 10 fathoms, about 7 miles off Cochin. The results showed that the macrofauna was more abundant than the meiofauna...

Distribution of Metabolically Active Prokaryotes (Archaea and Bacteria) throughout the Profiles of Chernozem and Brown Semidesert Soil

Science.gov (United States)

Semenov, M. V.; Manucharova, N. A.; Stepanov, A. L.

2016-02-01

The distribution of metabolically active cells of archaea and bacteria in the profiles of typical chernozems (Voronezh oblast) and brown semidesert soils (Astrakhan oblast) of natural and agricultural ecosystems was studied using the method of fluorescent in situ hybridization (FISH). The studied soils differed sharply in the microbial biomass and in the numbers of metabolically active cells of archaea and bacteria. The number of active bacterial cells was 3.5-7.0 times greater than that of archaea. In the arable chernozem, the numbers of active cells of archaea and bacteria were 2.6 and 1.5 times, respectively, lower than those in the chernozem under the shelterbelt. The agricultural use of the brown semidesert soil had little effect on the abundances of bacteria and archaea. The soil organic carbon content was the major factor controlling the numbers of metabolically active cells of both domains. However, the dependence of the abundance of bacteria on the organic matter content was more pronounced. The decrease in the organic carbon and total nitrogen contents down the soil profiles was accompanied by the decrease in the bacteria: archaea ratio attesting to a better adaptation of archaea to the permanent deficiency of carbon and nitrogen. The bacteria: archaea ratio can serve as an ecotrophic indicator of the state of soil microbial communities.

A hierarchical classification of benthic biodiversity and assessment of protected areas in the Southern Ocean.

Directory of Open Access Journals (Sweden)

Lucinda L Douglass

Full Text Available An international effort is underway to establish a representative system of marine protected areas (MPAs in the Southern Ocean to help provide for the long-term conservation of marine biodiversity in the region. Important to this undertaking is knowledge of the distribution of benthic assemblages. Here, our aim is to identify the areas where benthic marine assemblages are likely to differ from each other in the Southern Ocean including near-shore Antarctica. We achieve this by using a hierarchical spatial classification of ecoregions, bathomes and environmental types. Ecoregions are defined according to available data on biogeographic patterns and environmental drivers on dispersal. Bathomes are identified according to depth strata defined by species distributions. Environmental types are uniquely classified according to the geomorphic features found within the bathomes in each ecoregion. We identified 23 ecoregions and nine bathomes. From a set of 28 types of geomorphic features of the seabed, 562 unique environmental types were classified for the Southern Ocean. We applied the environmental types as surrogates of different assemblages of biodiversity to assess the representativeness of existing MPAs. We found that 12 ecoregions are not represented in MPAs and that no ecoregion has their full range of environmental types represented in MPAs. Current MPA planning processes, if implemented, will substantially increase the representation of environmental types particularly within 8 ecoregions. To meet internationally agreed conservation goals, additional MPAs will be needed. To assist with this process, we identified 107 spatially restricted environmental types, which should be considered for inclusion in future MPAs. Detailed supplementary data including a spatial dataset are provided.

Study on the spatial distribution of 137Cs content in bottom sediment and benthic species of Mumbai off Coast

International Nuclear Information System (INIS)

Sugandhi, S.; Joshi, V.M.; Jha, S.K.; Tripathi, R.M.

2014-01-01

The sediment compartment in marine system is receptor of radionuclides, is considered as indicator matrice. 137 Cs is globally distributed in the environment as a fallout of atmospheric nuclear explosions carried out in 60 s by USA,USSR and in 70 s by China. Bottom sediment and benthic species from various locations of Mumbai off coast were collected between 2007 to 2012 and the observed 137 Cs content in them varied between 2 to 370.3 Bq/kg (dry) , (wet) respectively. The average estimated ingestion dose to 'general public' due to the consumption of benthic species is 0.02-0.03 μSv/y, is infinitesimally smaller in comparison to the internationally accepted public dose limit of 1000 μSv/y. (author)

Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?

Science.gov (United States)

Ozuolmez, Derya; Na, Hyunsoo; Lever, Mark A; Kjeldsen, Kasper U; Jørgensen, Bo B; Plugge, Caroline M

2015-01-01

Acetate is a major product of fermentation processes and an important substrate for sulfate reducing bacteria and methanogenic archaea. Most studies on acetate catabolism by sulfate reducers and methanogens have used pure cultures. Less is known about acetate conversion by mixed pure cultures and the interactions between both groups. We tested interspecies hydrogen transfer and coexistence between marine methanogens and sulfate reducers using mixed pure cultures of two types of microorganisms. First, Desulfovibrio vulgaris subsp. vulgaris (DSM 1744), a hydrogenotrophic sulfate reducer, was cocultured together with the obligate aceticlastic methanogen Methanosaeta concilii using acetate as carbon and energy source. Next, Methanococcus maripaludis S2, an obligate H2- and formate-utilizing methanogen, was used as a partner organism to M. concilii in the presence of acetate. Finally, we performed a coexistence experiment between M. concilii and an acetotrophic sulfate reducer Desulfobacter latus AcSR2. Our results showed that D. vulgaris was able to reduce sulfate and grow from hydrogen leaked by M. concilii. In the other coculture, M. maripaludis was sustained by hydrogen leaked by M. concilii as revealed by qPCR. The growth of the two aceticlastic microbes indicated co-existence rather than competition. Altogether, our results indicate that H2 leaking from M. concilii could be used by efficient H2-scavengers. This metabolic trait, revealed from coculture studies, brings new insight to the metabolic flexibility of methanogens and sulfate reducers residing in marine environments in response to changing environmental conditions and community compositions. Using dedicated physiological studies we were able to unravel the occurrence of less obvious interactions between marine methanogens and sulfate-reducing bacteria.

Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?

Directory of Open Access Journals (Sweden)

Derya eOzuolmez

2015-05-01

Full Text Available Acetate is a major product of fermentation processes and an important substrate for sulfate reducing bacteria and methanogenic archaea. Most studies on acetate catabolism by sulfate reducers and methanogens have used pure cultures. Less is known about acetate conversion by mixed pure cultures and the interactions between both groups. We tested interspecies hydrogen transfer and coexistence between marine methanogens and sulfate reducers using mixed pure cultures of two types of microorganisms. First, Desulfovibrio vulgaris subsp. vulgaris (DSM 1744, a hydrogenotrophic sulfate reducer, was cocultured together with the obligate aceticlastic methanogen Methanosaeta concilii using acetate as carbon and energy source. Next, Methanococcus maripaludis S2, an obligate H2- and formate-utilizing methanogen, was used as a partner organism to M. concilii in the presence of acetate. Finally, we performed a coexistence experiment between M. concilii and an acetotrophic sulfate reducer Desulfobacter latus AcSR2. Our results showed that D. vulgaris was able to reduce sulfate and grow from hydrogen leaked by M. concilii. In the other coculture, M. maripaludis was sustained by hydrogen leaked by M. concilii as revealed by qPCR. The growth of the two aceticlastic microbes indicated co-existence rather than competition. Altogether, our results indicate that H2 leaking from M. concilii could be used by efficient H2-scavengers. This metabolic trait, revealed from coculture studies, brings new insight to the metabolic flexibility of methanogens and sulfate reducers residing in marine environments in response to changing environmental conditions and community compositions. Using dedicated physiological studies we were able to unravel the occurrence of less obvious interactions between marine methanogens and sulfate-reducing bacteria.

Engineering of β-glycosidases from hyperthermophilic Archaea

NARCIS (Netherlands)

Kaper, T.

2001-01-01

Hyperthermophilic Archaea are microorganisms that grow optimally above 80°C. To be able to live at these temperature extremes their cell components display extreme resistance towards thermal degradation. This characteristic is an attractive feature