WorldWideScience

Sample records for local air-sea interaction

  1. Air-Sea Interaction

    Science.gov (United States)

    Csanady, G. T.

    2001-03-01

    In recent years air-sea interaction has emerged as a subject in its own right, encompassing small-scale and large-scale processes in both air and sea. Air-Sea Interaction: Laws and Mechanisms is a comprehensive account of how the atmosphere and the ocean interact to control the global climate, what physical laws govern this interaction, and its prominent mechanisms. The topics covered range from evaporation in the oceans, to hurricanes, and on to poleward heat transport by the oceans. By developing the subject from basic physical (thermodynamic) principles, the book is accessible to graduate students and research scientists in meteorology, oceanography, and environmental engineering. It will also be of interest to the broader physics community involved in the treatment of transfer laws, and thermodynamics of the atmosphere and ocean.

  2. Field Observations of Coastal Air-Sea Interaction

    Science.gov (United States)

    Ortiz-Suslow, D. G.; Haus, B. K.; Williams, N. J.; Graber, H. C.

    2016-12-01

    In the nearshore zone wind, waves, and currents generated from different forcing mechanisms converge in shallow water. This can profoundly affect the physical nature of the ocean surface, which can significantly modulate the exchange of momentum, heat, and mass across the air-sea interface. For decades, the focus of air-sea interaction research has been on the open ocean while the shallow water regime has been relatively under-explored. This bears implications for efforts to understand and model various coastal processes, such as mixing, surface transport, and air-sea gas flux. The results from a recent study conducted at the New River Inlet in North Carolina showed that directly measured air-sea flux parameters, such as the atmospheric drag coefficient, are strong functions of space as well as the ambient conditions (i.e. wind speed and direction). The drag is typically used to parameterize the wind stress magnitude. It is generally assumed that the wind direction is the direction of the atmospheric forcing (i.e. wind stress), however significant wind stress steering off of the azimuthal wind direction was observed and was found to be related to the horizontal surface current shear. The authors have just returned from a field campaign carried out within Monterey Bay in California. Surface observations made from two research vessels were complimented by an array of beach and inland flux stations, high-resolution wind forecasts, and satellite image acquisitions. This is a rich data set and several case studies will be analyzed to highlight the importance of various processes for understanding the air-sea fluxes. Preliminary findings show that interactions between the local wind-sea and the shoaling, incident swell can have a profound effect on the wind stress magnitude. The Monterey Bay coastline contains a variety of topographical features and the importance of land-air-sea interactions will also be investigated.

  3. Remote ENSO forcing versus local air-sea interaction in QTCM: a sensitivity study to intraseasonal variability

    Directory of Open Access Journals (Sweden)

    D. Gushchina

    2006-01-01

    Full Text Available The skill of a newly designed global atmospheric model of intermediate complexity - QTCM (for quasi-equilibrium tropical circulation model in simulating the teleconnections is investigated. The role of the ENSO remote forcing over the Pacific surrounding regions is emphasized from sensitivity experiments to critical parameters of the model. The role of the tropical intraseasonal variability (ITV on the simulated ENSO teleconnection pattern is estimated using the methodology proposed by Lin et al. (2000 allowing to damp the energy of ITV in the model. The reduction of intraseasonal variability allows emphasizing the forced response of the atmosphere and eases the detection of local coupled atmosphere-ocean patterns. It was shown that the simulated ITV has an impact on the ENSO teleconnection pattern both in the mid-latitudes and in regions of ascending and descending branches of Walker circulation cells in the tropics.

  4. Air-Sea Interactions in the Marginal Ice Zone

    Science.gov (United States)

    2016-03-31

    elementascience.org Air-sea interactions in the marginal ice zoneAir-Sea interactions in the Marginal Ice Zone Seth Zippel1* • Jim Thomson1 1Applied...Bidlot, 2013; Collins -III et al., 2015). Spectral wave directions and spread are given in Figure 5, where the difference in wave and wind direction...359219a0. Chalikov DV, Belevich MY. 1993. One-dimensional theory of the wave boundary layer. Bound-Lay Meteor 63: 65–96. Collins -III CO, Rogers WE

  5. Air-Sea Interaction in the Somali Current Region

    Science.gov (United States)

    Jensen, T. G.; Rydbeck, A.

    2017-12-01

    The western Indian Ocean is an area of high eddy-kinetic energy generated by local wind-stress curl, instability of boundary currents as well as Rossby waves from the west coast of India and the equatorial wave guide as they reflect off the African coast. The presence of meso-scale eddies and coastal upwelling during the Southwest Monsoon affects the air-sea interaction on those scales. The U.S. Navy's Coupled Ocean-Atmosphere Mesoscale Prediction System (COAMPS) is used to understand and quantify the surface flux, effects on surface waves and the role of Sea Surface Temperature anomalies on ocean-atmosphere coupling in that area. The COAMPS atmosphere model component with 9 km resolution is fully coupled to the Navy Coastal Ocean Model (NCOM) with 3.5 km resolution and the Simulating WAves Nearshore (SWAN) wave model with 10 km resolution. Data assimilation using a 3D-variational approach is included in hindcast runs performed daily since June 1, 2015. An interesting result is that a westward jet associated with downwelling equatorial Rossy waves initiated the reversal from the southward Somali Current found during the northeast monsoon to a northward flow in March 2016 more than a month before the beginning of the southwest monsoon. It is also found that warm SST anomalies in the Somali Current eddies, locally increase surface wind speed due to an increase in the atmospheric boundary layer height. This results in an increase in significant wave height and also an increase in heat flux to the atmosphere. Cold SST anomalies over upwelling filaments have the opposite impacts on air-sea fluxes.

  6. Air-sea interactions in the marginal ice zone

    Directory of Open Access Journals (Sweden)

    Seth Zippel

    2016-03-01

    Full Text Available Abstract The importance of waves in the Arctic Ocean has increased with the significant retreat of the seasonal sea-ice extent. Here, we use wind, wave, turbulence, and ice measurements to evaluate the response of the ocean surface to a given wind stress within the marginal ice zone, with a focus on the local wind input to waves and subsequent ocean surface turbulence. Observations are from the Beaufort Sea in the summer and early fall of 2014, with fractional ice cover of up to 50%. Observations showed strong damping and scattering of short waves, which, in turn, decreased the wind energy input to waves. Near-surface turbulent dissipation rates were also greatly reduced in partial ice cover. The reductions in waves and turbulence were balanced, suggesting that a wind-wave equilibrium is maintained in the marginal ice zone, though at levels much less than in open water. These results suggest that air-sea interactions are suppressed in the marginal ice zone relative to open ocean conditions at a given wind forcing, and this suppression may act as a feedback mechanism in expanding a persistent marginal ice zone throughout the Arctic.

  7. Tropical Cyclone Induced Air-Sea Interactions Over Oceanic Fronts

    Science.gov (United States)

    Shay, L. K.

    2012-12-01

    Recent severe tropical cyclones underscore the inherent importance of warm background ocean fronts and their interactions with the atmospheric boundary layer. Central to the question of heat and moisture fluxes, the amount of heat available to the tropical cyclone is predicated by the initial mixed layer depth and strength of the stratification that essentially set the level of entrainment mixing at the base of the mixed layer. In oceanic regimes where the ocean mixed layers are thin, shear-induced mixing tends to cool the upper ocean to form cold wakes which reduces the air-sea fluxes. This is an example of negative feedback. By contrast, in regimes where the ocean mixed layers are deep (usually along the western part of the gyres), warm water advection by the nearly steady currents reduces the levels of turbulent mixing by shear instabilities. As these strong near-inertial shears are arrested, more heat and moisture transfers are available through the enthalpy fluxes (typically 1 to 1.5 kW m-2) into the hurricane boundary layer. When tropical cyclones move into favorable or neutral atmospheric conditions, tropical cyclones have a tendency to rapidly intensify as observed over the Gulf of Mexico during Isidore and Lili in 2002, Katrina, Rita and Wilma in 2005, Dean and Felix in 2007 in the Caribbean Sea, and Earl in 2010 just north of the Caribbean Islands. To predict these tropical cyclone deepening (as well as weakening) cycles, coupled models must have ocean models with realistic ocean conditions and accurate air-sea and vertical mixing parameterizations. Thus, to constrain these models, having complete 3-D ocean profiles juxtaposed with atmospheric profiler measurements prior, during and subsequent to passage is an absolute necessity framed within regional scale satellite derived fields.

  8. Diagnosing Air-Sea Interactions on Intraseasonal Timescales

    Science.gov (United States)

    DeMott, C. A.

    2014-12-01

    What is the role of ocean coupling in the Madden Julian Oscillation (MJO)? Consensus thinking holds that the essential physics of the MJO involve interactions between convection, atmospheric wave dynamics, and boundary layer and free troposphere moisture. However, many modeling studies demonstrate improved MJO simulation when an atmosphere-only general circulation model (AGCM) is coupled to an ocean model, so feedbacks from the ocean are probably not negligible. Assessing the importance and processes of these feedbacks is challenging for at least two reasons. First, observations of the MJO only sample the fully coupled ocean-atmosphere system; there is no "uncoupled" MJO in nature. Second, the practice of analyzing the MJO in uncoupled and coupled GCMs (CGCMs) involves using imperfect tools to study the problem. Although MJO simulation is improving in many models, shortcomings remain in both AGCMs and CGCMs, making it difficult to determine if changes brought about through coupling reflect critical air-sea interactions or are simply part of the collective idiosyncracies of a given model. For the atmosphere, ocean feedbacks from intraseasonal sea surface temperature (SST) variations are communicated through their effects on surface fluxes of heat and moisture. This presentation suggests a set of analysis tools for diagnosing the impact of an interactive ocean on surface latent and sensible heat fluxes, including their mean, variance, spectral characteristics, and phasing with respect to wind, SST, and MJO convection. The diagnostics are demonstrated with application to several CMIP5 models, and reveal a variety of responses to coupled ocean feedbacks.

  9. Role of North Indian Ocean Air-Sea Interaction in Summer Monsoon Intraseasonal Oscillation

    Science.gov (United States)

    Zhang, L.; Han, W.; Li, Y.

    2017-12-01

    Air-sea coupling processes over the North Indian Ocean associated with Indian summer monsoon intraseasonal oscillation (MISO) are analyzed. Observations show that MISO convection anomalies affect underlying sea surface temperature (SST) through changes in surface shortwave radiation (via cloud cover change) and surface latent heat flux (associated with surface wind speed change). In turn, SST anomalies determine the changing rate of MISO precipitation (dP/dt): warm (cold) SST anomalies cause increasing (decreasing) precipitation rate through increasing (decreasing) surface convergence. Air-sea interaction gives rise to a quadrature relationship between MISO precipitation and SST anomalies. A local air-sea coupling model (LACM) is established based on these observed physical processes, which is a damped oscillatory system with no external forcing. The period of LACM is proportional to the square root of mean state mixed layer depth , assuming other physical parameters remain unchanged. Hence, LACM predicts a relatively short (long) MISO period over the North Indian Ocean during the May-June monsoon developing (July-August mature) phase when is shallow (deep). This result is consistent with observed MISO statistics. An oscillatory external forcing of a typical 30-day period is added to LACM, representing intraseasonal oscillations originated from the equatorial Indian Ocean and propagate into the North Indian Ocean. The period of LACM is then determined by both the inherent period associated with local air-sea coupling and the period of external forcing. It is found that resonance occurs when , amplifying the MISO in situ. This result explains the larger MISO amplitude during the monsoon developing phase compared to the mature phase, which is associated with seasonal cycle of . LACM, however, fails to predict the observed small MISO amplitude during the September-October monsoon decaying phase, when is also shallow. This deficiency might be associated with the

  10. Regimes of seasonal air-sea interaction and implications for performance of forced simulations

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Renguang [Center for Ocean-Land-Atmosphere Studies, Calverton, MD (United States); Kirtman, Ben P. [Center for Ocean-Land-Atmosphere Studies, Calverton, MD (United States); George Mason University, School of Computational Sciences, Fairfax, VA (United States)

    2007-09-15

    Sea surface temperature (SST) anomalies can induce anomalous convection through surface evaporation and low-level moisture convergence. This SST forcing of the atmosphere is indicated in a positive local rainfall-SST correlation. Anomalous convection can feedback on SST through cloud-radiation and wind-evaporation effects and wind-induced oceanic mixing and upwelling. These atmospheric feedbacks are reflected in a negative local rainfall-SST tendency correlation. As such, the simultaneous rainfall-SST and rainfall-SST tendency correlations can indicate the nature of local air-sea interactions. Based on the magnitude of simultaneous rainfall-SST and rainfall-SST tendency correlations, the present study identifies three distinct regimes of local air-sea interactions. The relative importance of SST forcing and atmospheric forcing differs in these regimes. In the equatorial central-eastern Pacific and, to a smaller degree, in the western equatorial Indian Ocean, SST forcing dominates throughout the year and the surface heat flux acts mainly as a damping term. In the tropical Indo-western Pacific Ocean regions, SST forcing and atmospheric forcing dominate alternatively in different seasons. Atmospheric forcing dominates in the local warm/rainy season. SST forcing dominates with a positive wind-evaporation feedback during the transition to the cold/dry season. SST forcing also dominates during the transition to the warm/rainy season but with a negative cloud-radiation feedback. The performance of atmospheric general circulation model simulations forced by observed SST is closely linked to the regime of air-sea interaction. The forced simulations have good performance when SST forcing dominates. The performance is low or poor when atmospheric forcing dominates. (orig.)

  11. Coastal Land Air Sea Interaction: "the" beach towers

    Science.gov (United States)

    MacMahan, J. H.; Koscinski, J. S.; Ortiz-Suslow, D. G.; Haus, B. K.; Thornton, E. B.

    2016-12-01

    As part of the Coastal Land Air Sea Interaction (CLASI) experiment, an alongshore array of 6-m high towers instrumented with ultrasonic 3D anemometers and temperature-relative humidity sensors were deployed at five sandy beaches near the high-tide line in Monterey Bay, CA, in May-June 2016. A cross-shore array of towers was also deployed from within the active surfzone to the toe of the dune at one beach. In addition, waves and ocean temperature were obtained along the 10m isobath for each beach. The dissipative surfzone was O(80m) wide. The wave energy varies among the beaches owing to sheltering and refraction by the Monterey Canyon and headlands. The tides are semi-diurnal mixed, meso-tidal with a maximum tidal range of 2m. This results in a variable beach width from the tower to the tidal line. Footprint analysis for estimating the source region for the turbulent momentum fluxes, suggests that the observations represent three scenarios described as primarily ocean, mixed beach and ocean, and primarily beach. The direct-estimate of the atmospheric stability by the sonic anemometer suggest that all of the beaches are mostly unstable except for a few occurrences in the evening during low wind conditions. The onshore neutral drag coefficient (Cd) estimated at 10m heights is 3-5 times larger than open ocean estimates. Minimal variability was found in Cd based on the footprint analysis. Beach-specific spatial variability in Cd was found related to atmospheric stability and wave energy.

  12. Air-sea interactions during strong winter extratropical storms

    Science.gov (United States)

    Nelson, Jill; He, Ruoying; Warner, John C.; Bane, John

    2014-01-01

    A high-resolution, regional coupled atmosphere–ocean model is used to investigate strong air–sea interactions during a rapidly developing extratropical cyclone (ETC) off the east coast of the USA. In this two-way coupled system, surface momentum and heat fluxes derived from the Weather Research and Forecasting model and sea surface temperature (SST) from the Regional Ocean Modeling System are exchanged via the Model Coupling Toolkit. Comparisons are made between the modeled and observed wind velocity, sea level pressure, 10 m air temperature, and sea surface temperature time series, as well as a comparison between the model and one glider transect. Vertical profiles of modeled air temperature and winds in the marine atmospheric boundary layer and temperature variations in the upper ocean during a 3-day storm period are examined at various cross-shelf transects along the eastern seaboard. It is found that the air–sea interactions near the Gulf Stream are important for generating and sustaining the ETC. In particular, locally enhanced winds over a warm sea (relative to the land temperature) induce large surface heat fluxes which cool the upper ocean by up to 2 °C, mainly during the cold air outbreak period after the storm passage. Detailed heat budget analyses show the ocean-to-atmosphere heat flux dominates the upper ocean heat content variations. Results clearly show that dynamic air–sea interactions affecting momentum and buoyancy flux exchanges in ETCs need to be resolved accurately in a coupled atmosphere–ocean modeling framework.

  13. Air-sea interaction in the tropical Pacific Ocean

    Science.gov (United States)

    Allison, L. J.; Steranka, J.; Holub, R. J.; Hansen, J.; Godshall, F. A.; Prabhakara, C.

    1972-01-01

    Charts of 3-month sea surface temperature (SST) anomalies in the eastern tropical Pacific Ocean were produced for the period 1949 to 1970. The anomalies along the United States and South American west coasts and in the eastern tropical Pacific appeared to be oscillating in phase during this period. Similarly, the satellite-derived cloudiness for each of four quadrants of the Pacific Ocean (130 deg E to 100 deg W, 30 deg N to 25 deg S) appeared to be oscillating in phase. In addition, a global tropical cloudiness oscillation from 30 deg N to 30 deg S was noted from 1965 to 1970, by using monthly satellite television nephanalyses. The SST anomalies were found to have a good degree of correlation both positive and negative with the following monthly geophysical parameters: (1) satellite-derived cloudiness, (2) strength of the North and South Pacific semipermanent anticyclones, (3) tropical Pacific island rainfall, and (4) Darwin surface pressure. Several strong direct local and crossequatorial relationships were noted. In particular, the high degree of correlation between the tropical island rainfall and the SST anomalies (r = +0.93) permitted the derivation of SST's for the tropical Pacific back to 1905. The close occurrence of cold tropical SST and North Pacific 700-mb positive height anomalies with central United States drought conditions was noted.

  14. REGIONAL AIR-SEA INTERACTION (RASI) GAP WIND AND COASTAL UPWELLING EVENTS CLIMATOLOGY GULF OF PAPAGAYO, COSTA RICA V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The Regional Air-Sea Interactions (RASI) Gap Wind and Coastal Upwelling Events Climatology Gulf of Papagayo, Costa Rica dataset was created using an automated...

  15. Interannual-to-decadal air-sea interactions in the tropical Atlantic region

    Science.gov (United States)

    Ruiz-Barradas, Alfredo

    2001-09-01

    The present research identifies modes of atmosphere-ocean interaction in the tropical Atlantic region and the mechanisms by which air-sea interactions influence the regional climate. Novelties of the present work are (1)the use of relevant ocean and atmosphere variables important to identity coupled variability in the system. (2)The use of new data sets, including realistic diabatic heating. (3)The study of interactions between ocean and atmosphere relevant at interannual-to-decadal time scales. Two tropical modes of variability are identified during the period 1958-1993, the Atlantic Niño mode and the Interhemispheric mode. Those modes have defined structures in both ocean and atmosphere. Anomalous sea surface temperatures and winds are associated to anomalous placement of the Intertropical Convergence Zone (ITCZ). They develop maximum amplitude during boreal summer and spring, respectively. The anomalous positioning of the ITCZ produces anomalous precipitation in some places like Nordeste, Brazil and the Caribbean region. Through the use of a diagnostic primitive equation model, it is found that the most important terms controlling local anomalous surface winds over the ocean are boundary layer temperature gradients and diabatic heating anomalies at low levels (below 780 mb). The latter is of particular importance in the deep tropics in producing the anomalous meridional response to the surface circulation. Simulated latent heat anomalies indicate that a thermodynamic feedback establishes positive feedbacks at both sides of the equator and west of 20°W in the deep tropics and a negative feedback in front of the north west coast of Africa for the Interhemispheric mode. This thermodynamic feedback only establishes negative feedbacks for the Atlantic Niño mode. Transients establish some connection between the tropical Atlantic and other basins. Interhemispheric gradients of surface temperature in the tropical Atlantic influence winds in the midlatitude North

  16. Assessing Air-Sea Interaction in the Evolving NASA GEOS Model

    Science.gov (United States)

    Clayson, Carol Anne; Roberts, J. Brent

    2015-01-01

    In order to understand how the climate responds to variations in forcing, one necessary component is to understand the full distribution of variability of exchanges of heat and moisture between the atmosphere and ocean. Surface heat and moisture fluxes are critical to the generation and decay of many coupled air-sea phenomena. These mechanisms operate across a number of scales and contain contributions from interactions between the anomalous (i.e. non-mean), often extreme-valued, flux components. Satellite-derived estimates of the surface turbulent and radiative heat fluxes provide an opportunity to assess results from modeling systems. Evaluation of only time mean and variability statistics, however only provides limited traceability to processes controlling what are often regime-dependent errors. This work will present an approach to evaluate the representation of the turbulent fluxes at the air-sea interface in the current and evolving Goddard Earth Observing System (GEOS) model. A temperature and moisture vertical profile-based clustering technique is used to identify robust weather regimes, and subsequently intercompare the turbulent fluxes and near-surface parameters within these regimes in both satellite estimates and GEOS-driven data sets. Both model reanalysis (MERRA) and seasonal-to-interannual coupled GEOS model simulations will be evaluated. Particular emphasis is placed on understanding the distribution of the fluxes including extremes, and the representation of near-surface forcing variables directly related to their estimation. Results from these analyses will help identify the existence and source of regime-dependent biases in the GEOS model ocean surface turbulent fluxes. The use of the temperature and moisture profiles for weather-state clustering will be highlighted for its potential broad application to 3-D output typical of model simulations.

  17. A climatic atlas of the air-sea interaction parameters and fluxes of the oceans using satellite data

    Digital Repository Service at National Institute of Oceanography (India)

    RameshKumar, M.R.; Schulz, J.; Jost, V.

    . It is intended to provide a climatological data base for scientists in the field of climatology and air-sea interaction. It is hoped that this atlas will serve as a reference to the students as well as the scientists working in the fields of Climatology...

  18. Study of the air-sea interactions at the mesoscale: the SEMAPHORE experiment

    Directory of Open Access Journals (Sweden)

    L. Eymard

    1996-09-01

    Full Text Available The SEMAPHORE (Structure des Echanges Mer-Atmosphère, Propriétés des Hétérogénéités Océaniques: Recherche Expérimentale experiment has been conducted from June to November 1993 in the Northeast Atlantic between the Azores and Madeira. It was centered on the study of the mesoscale ocean circulation and air-sea interactions. The experimental investigation was achieved at the mesoscale using moorings, floats, and ship hydrological survey, and at a smaller scale by one dedicated ship, two instrumented aircraft, and surface drifting buoys, for one and a half month in October-November (IOP: intense observing period. Observations from meteorological operational satellites as well as spaceborne microwave sensors were used in complement. The main studies undertaken concern the mesoscale ocean, the upper ocean, the atmospheric boundary layer, and the sea surface, and first results are presented for the various topics. From data analysis and model simulations, the main characteristics of the ocean circulation were deduced, showing the close relationship between the Azores front meander and the occurrence of Mediterranean water lenses (meddies, and the shift between the Azores current frontal signature at the surface and within the thermocline. Using drifting buoys and ship data in the upper ocean, the gap between the scales of the atmospheric forcing and the oceanic variability was made evident. A 2 °C decrease and a 40-m deepening of the mixed layer were measured within the IOP, associated with a heating loss of about 100 W m-2. This evolution was shown to be strongly connected to the occurrence of storms at the beginning and the end of October. Above the surface, turbulent measurements from ship and aircraft were analyzed across the surface thermal front, showing a 30% difference in heat fluxes between both sides during a 4-day period, and the respective contributions of the wind and the surface temperature were evaluated. The classical

  19. Study of the air-sea interactions at the mesoscale: the SEMAPHORE experiment

    Science.gov (United States)

    Eymard, L.; Planton, S.; Durand, P.; Le Visage, C.; Le Traon, P. Y.; Prieur, L.; Weill, A.; Hauser, D.; Rolland, J.; Pelon, J.; Baudin, F.; Bénech, B.; Brenguier, J. L.; Caniaux, G.; de Mey, P.; Dombrowski, E.; Druilhet, A.; Dupuis, H.; Ferret, B.; Flamant, C.; Flamant, P.; Hernandez, F.; Jourdan, D.; Katsaros, K.; Lambert, D.; Lefèvre, J. M.; Le Borgne, P.; Le Squere, B.; Marsoin, A.; Roquet, H.; Tournadre, J.; Trouillet, V.; Tychensky, A.; Zakardjian, B.

    1996-09-01

    The SEMAPHORE (Structure des Echanges Mer-Atmosphère, Propriétés des Hétérogénéités Océaniques: Recherche Expérimentale) experiment has been conducted from June to November 1993 in the Northeast Atlantic between the Azores and Madeira. It was centered on the study of the mesoscale ocean circulation and air-sea interactions. The experimental investigation was achieved at the mesoscale using moorings, floats, and ship hydrological survey, and at a smaller scale by one dedicated ship, two instrumented aircraft, and surface drifting buoys, for one and a half month in October-November (IOP: intense observing period). Observations from meteorological operational satellites as well as spaceborne microwave sensors were used in complement. The main studies undertaken concern the mesoscale ocean, the upper ocean, the atmospheric boundary layer, and the sea surface, and first results are presented for the various topics. From data analysis and model simulations, the main characteristics of the ocean circulation were deduced, showing the close relationship between the Azores front meander and the occurrence of Mediterranean water lenses (meddies), and the shift between the Azores current frontal signature at the surface and within the thermocline. Using drifting buoys and ship data in the upper ocean, the gap between the scales of the atmospheric forcing and the oceanic variability was made evident. A 2 °C decrease and a 40-m deepening of the mixed layer were measured within the IOP, associated with a heating loss of about 100 W m-2. This evolution was shown to be strongly connected to the occurrence of storms at the beginning and the end of October. Above the surface, turbulent measurements from ship and aircraft were analyzed across the surface thermal front, showing a 30% difference in heat fluxes between both sides during a 4-day period, and the respective contributions of the wind and the surface temperature were evaluated. The classical momentum flux bulk

  20. Study of the air-sea interactions at the mesoscale: the SEMAPHORE experiment

    Directory of Open Access Journals (Sweden)

    L. Eymard

    Full Text Available The SEMAPHORE (Structure des Echanges Mer-Atmosphère, Propriétés des Hétérogénéités Océaniques: Recherche Expérimentale experiment has been conducted from June to November 1993 in the Northeast Atlantic between the Azores and Madeira. It was centered on the study of the mesoscale ocean circulation and air-sea interactions. The experimental investigation was achieved at the mesoscale using moorings, floats, and ship hydrological survey, and at a smaller scale by one dedicated ship, two instrumented aircraft, and surface drifting buoys, for one and a half month in October-November (IOP: intense observing period. Observations from meteorological operational satellites as well as spaceborne microwave sensors were used in complement. The main studies undertaken concern the mesoscale ocean, the upper ocean, the atmospheric boundary layer, and the sea surface, and first results are presented for the various topics. From data analysis and model simulations, the main characteristics of the ocean circulation were deduced, showing the close relationship between the Azores front meander and the occurrence of Mediterranean water lenses (meddies, and the shift between the Azores current frontal signature at the surface and within the thermocline. Using drifting buoys and ship data in the upper ocean, the gap between the scales of the atmospheric forcing and the oceanic variability was made evident. A 2 °C decrease and a 40-m deepening of the mixed layer were measured within the IOP, associated with a heating loss of about 100 W m-2. This evolution was shown to be strongly connected to the occurrence of storms at the beginning and the end of October. Above the surface, turbulent measurements from ship and aircraft were analyzed across the surface thermal front, showing a 30% difference in heat fluxes between both sides during a 4-day period, and the respective contributions of the wind and the surface temperature were evaluated. The

  1. Cruise and Data Report of USA-PRC Joint Air-Sea Interaction Studies in the Western Pacific Ocean (NODC Accession 8700374)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The USA-PRC Joint Program on Air-Sea Interaction Studies in the Tropical Western Pacific is a component of the Protocol on Cooperation in the Field of Marine and...

  2. Air-sea interaction over the Indian Ocean during the two contrasting monsoon years 1987 and 1988 studied with satellite data

    Digital Repository Service at National Institute of Oceanography (India)

    RameshKumar, M.R.; Schluessel, P.

    The air-sea interaction processes over the tropical Indian Ocean region are studied using sea surface temperature data from the Advanced Very High Resolution Radiometer sensor onboard the NOAA series of satellites. The columnar water-vapour content...

  3. Air-sea interaction and formation of the Asian summer monsoon onset vortex over the Bay of Bengal

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Guoxiong; Liu, Yimin; Mao, Jiangyu [Chinese Academy of Sciences, State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics (LASG), Institute of Atmospheric Physics, P.O. Box 9804, Beijing (China); Guan, Yue [Chinese Academy of Sciences, State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics (LASG), Institute of Atmospheric Physics, P.O. Box 9804, Beijing (China); Graduate University of Chinese Academy of Sciences, Beijing (China); Yan, Jinghui [China Meteorological Administration, National Climate Center, Beijing (China)

    2012-01-15

    In spring over the southern Bay of Bengal (BOB), a vortex commonly develops, followed by the Asian summer monsoon onset. An analysis of relevant data and a case study reveals that the BOB monsoon onset vortex is formed as a consequence of air-sea interaction over BOB, which is modulated by Tibetan Plateau forcing and the land-sea thermal contrast over the South Asian area during the spring season. Tibetan Plateau forcing in spring generates a prevailing cold northwesterly over India in the lower troposphere. Strong surface sensible heating is then released, forming a prominent surface cyclone with a strong southwesterly along the coastal ocean in northwestern BOB. This southwesterly induces a local offshore current and upwelling, resulting in cold sea surface temperatures (SSTs). The southwesterly, together with the near-equatorial westerly, also results in a surface anticyclone with descending air over most of BOB and a cyclone with ascending air over the southern part of BOB. In the eastern part of central BOB, where sky is clear, surface wind is weak, and ocean mixed layer is shallow, intense solar radiation and low energy loss due to weak surface latent and sensible heat fluxes act onto a thin ocean layer, resulting in the development of a unique BOB warm pool in spring. Near the surface, water vapor is transferred from northern BOB and other regions to southeastern BOB, where surface sensible heating is relatively high. The atmospheric available potential energy is generated and converted to kinetic energy, thereby resulting in vortex formation. The vortex then intensifies and moves northward, where SST is higher and surface sensible heating is stronger. Meanwhile, the zonal-mean kinetic energy is converted to eddy kinetic energy in the area east of the vortex, and the vortex turns eastward. Eventually, southwesterly sweeps over eastern BOB and merges with the subtropical westerly, leading to the onset of the Asian summer monsoon. (orig.)

  4. Understanding the Role of Air-Sea Interaction on Extreme Rainfall in Aquaplanet and Earth-like CESM2

    Science.gov (United States)

    Benedict, J. J.; Clement, A. C.; Medeiros, B.

    2017-12-01

    Extreme precipitation events are associated with anomalous, latitudinally dependent dynamical and convective weather systems. For example, plumes of excessive poleward water vapor transport and topographical effects drive extreme precipitation events in the midlatitudes, while intense tropical precipitation is associated with organized convective systems. In both cases, air-sea fluxes have the potential to contribute significantly to the moisture budget of these storms, but the roles of surface fluxes and upper-ocean processes and their impact on precipitation extremes have yet to be explored in sufficient detail. To examine such mechanisms, we implement a climate model hierarchy that encompasses a spectrum of ocean models, from prescribed-SST to fully dynamic, as well as both aquaplanet and Earth-like lower boundary types within version 2 of the Community Earth System Model (CESM2). Using the CESM2 hierarchy and comparing to observations, we identify key moisture processes and related air-sea interactions that drive extreme precipitation events across different latitudes in Earth-like models and then generalize the analyses in aquaplanet configurations to highlight the most salient features. The analyses are applied to both present-day and global warming conditions to investigate how these fundamental mechanisms might change extreme precipitation events in the future climate.

  5. MP3 - A Meteorology and Physical Properties Package to explore Air:Sea interaction on Titan

    Science.gov (United States)

    Lorenz, R. D.

    2012-04-01

    The exchange of mass, heat and momentum at the air:sea interface are profound influences on our environment. Titan presents us with an opportunity to study these processes in a novel physical context. The MP3 instrument, under development for the proposed Discovery mission TiME (Titan Mare Explorer) is an integrated suite of small, simple sensors that combines the a traditional meteorology package with liquid physical properties and depth-sounding. In TiME's 6-Titan-day (96-day) nominal mission, MP3 will have an extended measurement opportunity in one of the most evocative environments in the solar system. The mission and instrument benefit from APL's expertise and experience in marine as well as space systems. The topside meteorology sensors (METH, WIND, PRES, TEMP) will yield the first long-duration in-situ data to constrain Global Circulation Models. The sea sensors (TEMP, TURB, DIEL, SOSO) allow high cadence bulk composition measurements to detect heterogeneities as the TiME capsule drifts across Ligeia, while a depth sounder (SONR) will measure the bottom profile. The combination of these sensors (and vehicle dynamics, ACCL) will characterize air:sea exchange. In addition to surface data, a measurement subset (ACCL, PRES, METH, TEMP) is made during descent to characterize the structure of the polar troposphere and marine boundary layer. A single electronics box inside the vehicle performs supervising and data handling functions and is connected to the sensors on the exterior via a wire and fiber optic harness. ACCL: MEMS accelerometers and angular rate sensors measure the vehicle motion during descent and on the surface, to recover wave amplitude and period and to correct wind measurements for vehicle motion. TEMP: Precision sensors are installed at several locations above and below the 'waterline' to measure air and sea temperatures. Installation of topside sensors at several locations ensures that at least one is on the upwind side of the vehicle. PRES: The

  6. Observed Seasonal Variations of the Upper Ocean Structure and Air-Sea Interactions in the Andaman Sea

    Science.gov (United States)

    Liu, Yanliang; Li, Kuiping; Ning, Chunlin; Yang, Yang; Wang, Haiyuan; Liu, Jianjun; Skhokiattiwong, Somkiat; Yu, Weidong

    2018-02-01

    The Andaman Sea (AS) is a poorly observed basin, where even the fundamental physical characteristics have not been fully documented. Here the seasonal variations of the upper ocean structure and the air-sea interactions in the central AS were studied using a moored surface buoy. The seasonal double-peak pattern of the sea surface temperature (SST) was identified with the corresponding mixed layer variations. Compared with the buoys in the Bay of Bengal (BOB), the thermal stratification in the central AS was much stronger in the winter to spring, when a shallower isothermal layer and a thinner barrier layer were sustained. The temperature inversion was strongest from June to July because of substantial surface heat loss and subsurface prewarming. The heat budget analysis of the mixed layer showed that the net surface heat fluxes dominated the seasonal SST cycle. Vertical entrainment was significant from April to July. It had a strong cooling effect from April to May and a striking warming effect from June to July. A sensitivity experiment highlighted the importance of salinity. The AS warmer surface water in the winter was associated with weak heat loss caused by weaker longwave radiation and latent heat losses. However, the AS latent heat loss was larger than the BOB in summer due to its lower relative humidity.

  7. Effects of air-sea interaction on extended-range prediction of geopotential height at 500 hPa over the northern extratropical region

    Science.gov (United States)

    Wang, Xujia; Zheng, Zhihai; Feng, Guolin

    2018-04-01

    The contribution of air-sea interaction on the extended-range prediction of geopotential height at 500 hPa in the northern extratropical region has been analyzed with a coupled model form Beijing Climate Center and its atmospheric components. Under the assumption of the perfect model, the extended-range prediction skill was evaluated by anomaly correlation coefficient (ACC), root mean square error (RMSE), and signal-to-noise ratio (SNR). The coupled model has a better prediction skill than its atmospheric model, especially, the air-sea interaction in July made a greater contribution for the improvement of prediction skill than other months. The prediction skill of the extratropical region in the coupled model reaches 16-18 days in all months, while the atmospheric model reaches 10-11 days in January, April, and July and only 7-8 days in October, indicating that the air-sea interaction can extend the prediction skill of the atmospheric model by about 1 week. The errors of both the coupled model and the atmospheric model reach saturation in about 20 days, suggesting that the predictable range is less than 3 weeks.

  8. Impact of surface sensible heating over the Tibetan Plateau on the western Pacific subtropical high: A land-air-sea interaction perspective

    Science.gov (United States)

    Duan, Anmin; Sun, Ruizao; He, Jinhai

    2017-02-01

    The impact of surface sensible heating over the Tibetan Plateau (SHTP) on the western Pacific subtropical high (WPSH) with and without air-sea interaction was investigated in this study. Data analysis indicated that SHTP acts as a relatively independent factor in modulating the WPSH anomaly compared with ENSO events. Stronger spring SHTP is usually followed by an enhanced and westward extension of the WPSH in summer, and vice versa. Numerical experiments using both an AGCM and a CGCM confirmed that SHTP influences the large-scale circulation anomaly over the Pacific, which features a barotropic anticyclonic response over the northwestern Pacific and a cyclonic response to the south. Owing to different background circulation in spring and summer, such a response facilitates a subdued WPSH in spring but an enhanced WPSH in summer. Moreover, the CGCM results showed that the equatorial low-level westerly at the south edge of the cyclonic anomaly brings about a warm SST anomaly (SSTA) in the equatorial central Pacific via surface warm advection. Subsequently, an atmospheric Rossby wave is stimulated to the northwest of the warm SSTA, which in turn enhances the atmospheric dipole anomalies over the western Pacific. Therefore, the air-sea feedbacks involved tend to reinforce the effect of SHTP on the WPSH anomaly, and the role of SHTP on general circulation needs to be considered in a land-air-sea interaction framework.

  9. Laboratory modeling of air-sea interaction under severe wind conditions

    Science.gov (United States)

    Troitskaya, Yuliya; Vasiliy, Kazakov; Nicolay, Bogatov; Olga, Ermakova; Mikhail, Salin; Daniil, Sergeev; Maxim, Vdovin

    2010-05-01

    Wind-wave interaction at extreme wind speed is of special interest now in connection with the problem of explanation of the sea surface drag saturation at the wind speed exceeding 30 m/s. The idea on saturation (and even reduction) of the coefficient of aerodynamic resistance of the sea surface at hurricane wind speed was first suggested by Emanuel (1995) on the basis of theoretical analysis of sensitivity of maximum wind speed in a hurricane to the ratio of the enthalpy and momentum exchange coefficients. Both field (Powell, Vickery, Reinhold, 2003, French et al, 2007, Black, et al, 2007) and laboratory (Donelan et al, 2004) experiments confirmed that at hurricane wind speed the sea surface drag coefficient is significantly reduced in comparison with the parameterization obtained at moderate to strong wind conditions. Two groups of possible theoretical mechanisms for explanation of the effect of the sea surface drag reduction can be specified. In the first group of models developed by Kudryavtsev & Makin (2007) and Kukulka,Hara Belcher (2007), the sea surface drag reduction is explained by peculiarities of the air flow over breaking waves. Another approach more appropriate for the conditions of developed sea exploits the effect of sea drops and sprays on the wind-wave momentum exchange (Andreas, 2004; Makin, 2005; Kudryavtsev, 2006). The main objective of this work is investigation of factors determining momentum exchange under high wind speeds basing on the laboratory experiment in a well controlled environment. The experiments were carried out in the Thermo-Stratified WInd-WAve Tank (TSWIWAT) of the Institute of Applied Physics. The parameters of the facility are as follows: airflow 0 - 25 m/s (equivalent 10-m neutral wind speed U10 up to 60 m/s), dimensions 10m x 0.4m x 0.7 m, temperature stratification of the water layer. Simultaneous measurements of the airflow velocity profiles and wind waves were carried out in the wide range of wind velocities. Airflow

  10. Air-sea interactions of semi-volatile organic compounds in the tropical environment of Southeast Asia

    Directory of Open Access Journals (Sweden)

    Balasubramanian R.

    2010-12-01

    Full Text Available Major urban and industrial centers increase loadings of semi-volatile organic compounds (SVOCs to proximate sea waters through riverine transport, atmospheric deposition via dry particle deposition, wet deposition, and air-sea gas exchange. In addition to acting as sinks for SVOCs, oceans can act as sources of SVOCs to coastal atmospheres and play important roles in the global biogeochemistry of SVOCs. Particle-sorbed SVOCs can settle to the ocean surface by dry particle deposition, a uni-directional advective transport process from the atmosphere to the water, the removal rate by which is a function of the physical and chemical properties of the aerosols and bound pollutants, meteorological conditions and surface characteristics. In addition, SVOCs are removed from the atmosphere and transported to the waters by precipitation scavenging of atmospheric vapors and particles, which are incorporated into the rain within or below the clouds. After SVOCs are deposited into the bulk seawater, water-column partitioning can affect the distribution of pollutants between the dissolved aqueous and the solid phases and eventually impact the fate of these compounds in oceans. Other than the abovementioned processes, air-sea exchange can make SVOCs diffuse across the air-sea interface; however, the sea surface microlayer (SML, a unique compartment at the air-sea boundary defined operationally as the upper millimeter (1 ∼ 1000 μm of the sea surface, has large storage capacity to delay the transport of SVOCs across the interface. This article reports the dry particle deposition and wet deposition of selected SVOCs based on an extensive set of yearly data collected in Singapore. Singapore, a representative country of Southeast Asia (SEA, is a small but highly developed island with dense industrial parks in the Southwestern part, where the terrestrial sources affect the surrounding coasts. In this study, Singapore’s Southern coastline was chosen during

  11. Oceanographic, Air-sea Interaction, and Environmental Aspects of Artificial Upwelling Produced by Wave-Inertia Pumps for Potential Hurricane Intensity Mitigation

    Science.gov (United States)

    Soloviev, A.; Dean, C.

    2017-12-01

    The artificial upwelling system consisting of the wave-inertia pumps driven by surface waves can produce flow of cold deep water to the surface. One of the recently proposed potential applications of the artificial upwelling system is the hurricane intensity mitigation. Even relatively small reduction of intensity may provide significant benefits. The ocean heat content (OHC) is the "fuel" for hurricanes. The OHC can be reduced by mixing of the surface layer with the cold water produced by wave-inertia pumps. Implementation of this system for hurricane mitigation has several oceanographic and air-sea interaction aspects. The cold water brought to the surface from a deeper layer has higher density than the surface water and, therefore, tends to sink back down. The mixing of the cold water produced by artificial upwelling depends on environmental conditions such as stratification, regional ocean circulation, and vertical shear. Another aspect is that as the sea surface temperature drops below the air temperature, the stable stratification develops in the atmospheric boundary layer. The stable atmospheric stratification suppresses sensible and latent heat air-sea fluxes and reduces the net longwave irradiance from the sea surface. As a result, the artificial upwelling may start increasing the OHC (though still reducing the sea surface temperature). In this work, the fate of the cold water in the stratified environment with vertical shear has been studied using computational fluid dynamics (CFD) tools. A 3D large eddy simulation model is initialized with observational temperature, salinity, and current velocity data from a sample location in the Straits of Florida. A periodic boundary condition is set along the direction of the current, which allows us to simulate infinite fetch. The model results indicate that the cold water brought to the sea surface by a wave-inertia pump forms a convective jet. This jet plunges into the upper ocean mixed layer and penetrates the

  12. Air-sea exchange of carbon dioxide

    Energy Technology Data Exchange (ETDEWEB)

    Bakker, D C.E.; De Baar, H J.W.; De Jong, E; Koning, F A [Netherlands Institute for Sea Research NIOZ, Den Burg Texel (Netherlands)

    1996-12-31

    The greenhouse gas carbon dioxide is emitted by anthropogenic activities. The oceans presumably serve as a net sink for 17 to 39% of these emissions. The objective of this project is to quantify more accurately the locality, seasonality and magnitude of the net air-sea flux of CO2 with emphasis on the South Atlantic Ocean. In situ measurements of the fugacity of CO2 in surface water and marine air, of total dissolved inorganic carbon, alkalinity and of air-sea exchange of CO2 have been made at four Atlantic crossings, in the Southern Ocean, in a Norwegian fjord and in the Dutch coastal zone. Skin temperature was detected during several of the cruises. The data collected in the course of the project support and refine previous findings. Variability of dissolved CO2 in surface water is related in a complex way to biological and physical factors. The carbonate equilibria cause dissolved gaseous CO2 to react in an intricate manner to disturbances. Dissolved gaseous CO2 hardly ever attains equilibrium with the atmospheric CO2 content by means of air-sea exchange, before a new disturbance occurs. Surface water fCO2 changes could be separated in those caused by seasonal warming and those by biological uptake in a Southern Ocean spring. Incorporation of a thermal skin effect and a change of the wind speed interval strongly increased the small net oceanic uptake for the area. The Atlantic crossings point to a relationship between water mass history and surface water CO2 characteristics. In particular, current flow and related heat fluxes leave their imprint on the concentration dissolved gaseous CO2 and on air-sea exchange. In the Dutch coastal zone hydrography and inorganic carbon characteristics of the water were heterogeneous, which yielded variable air-sea exchange of CO2. figs., tabs., refs.

  13. The relationship between the microwave radar cross section and both wind speed and stress: Model function studies using Frontal Air-Sea Interaction Experiment data

    Science.gov (United States)

    Weissman, David E.; Davidson, Kenneth L.; Brown, Robert A.; Friehe, Carl A.; Li, Fuk

    1994-01-01

    The Frontal Air-Sea Interaction Experiment (FASINEX) provided a unique data set with coincident airborne scatterometer measurements of the ocean surface radar cross section (RCS)(at Ku band) and near-surface wind and wind stress. These data have been analyzed to study new model functions which relate wind speed and surface friction velocity (square root of the kinematic wind stress) to the radar cross section and to better understand the processes in the boundary layer that have a strong influence on the radar backscatter. Studies of data from FASINEX indicate that the RCS has a different relation to the friction velocity than to the wind speed. The difference between the RCS models using these two variables depends on the polarization and the incidence angle. The radar data have been acquired from the Jet Propulsion Laboratory airborne scatterometer. These data span 10 different flight days. Stress measurements were inferred from shipboard instruments and from aircraft flying at low altitudes, closely following the scatterometer. Wide ranges of radar incidence angles and environmental conditions needed to fully develop algorithms are available from this experiment.

  14. Air-sea interaction regimes in the sub-Antarctic Southern Ocean and Antarctic marginal ice zone revealed by icebreaker measurements

    Science.gov (United States)

    Yu, Lisan; Jin, Xiangze; Schulz, Eric W.; Josey, Simon A.

    2017-08-01

    This study analyzed shipboard air-sea measurements acquired by the icebreaker Aurora Australis during its off-winter operation in December 2010 to May 2012. Mean conditions over 7 months (October-April) were compiled from a total of 22 ship tracks. The icebreaker traversed the water between Hobart, Tasmania, and the Antarctic continent, providing valuable in situ insight into two dynamically important, yet poorly sampled, regimes: the sub-Antarctic Southern Ocean and the Antarctic marginal ice zone (MIZ) in the Indian Ocean sector. The transition from the open water to the ice-covered surface creates sharp changes in albedo, surface roughness, and air temperature, leading to consequential effects on air-sea variables and fluxes. Major effort was made to estimate the air-sea fluxes in the MIZ using the bulk flux algorithms that are tuned specifically for the sea-ice effects, while computing the fluxes over the sub-Antarctic section using the COARE3.0 algorithm. The study evidenced strong sea-ice modulations on winds, with the southerly airflow showing deceleration (convergence) in the MIZ and acceleration (divergence) when moving away from the MIZ. Marked seasonal variations in heat exchanges between the atmosphere and the ice margin were noted. The monotonic increase in turbulent latent and sensible heat fluxes after summer turned the MIZ quickly into a heat loss regime, while at the same time the sub-Antarctic surface water continued to receive heat from the atmosphere. The drastic increase in turbulent heat loss in the MIZ contrasted sharply to the nonsignificant and seasonally invariant turbulent heat loss over the sub-Antarctic open water.Plain Language SummaryThe icebreaker Aurora Australis is a research and supply vessel that is regularly chartered by the Australian Antarctic Division during the southern summer to operate in waters between Hobart, Tasmania, and Antarctica. The vessel serves as the main lifeline to three permanent research stations on the

  15. Potential regulation on the climatic effect of Tibetan Plateau heating by tropical air-sea coupling in regional models

    Science.gov (United States)

    Wang, Ziqian; Duan, Anmin; Yang, Song

    2018-05-01

    Based on the conventional weather research and forecasting (WRF) model and the air-sea coupled mode WRF-OMLM, we investigate the potential regulation on the climatic effect of Tibetan Plateau (TP) heating by the air-sea coupling over the tropical Indian Ocean and western Pacific. Results indicate that the TP heating significantly enhances the southwesterly monsoon circulation over the northern Indian Ocean and the South Asia subcontinent. The intensified southwesterly wind cools the sea surface mainly through the wind-evaporation-SST (sea surface temperature) feedback. Cold SST anomaly then weakens monsoon convective activity, especially that over the Bay of Bengal, and less water vapor is thus transported into the TP along its southern slope from the tropical oceans. As a result, summer precipitation decreases over the TP, which further weakens the TP local heat source. Finally, the changed TP heating continues to influence the summer monsoon precipitation and atmospheric circulation. To a certain extent, the air-sea coupling over the adjacent oceans may weaken the effect of TP heating on the mean climate in summer. It is also implied that considerations of air-sea interaction are necessary in future simulation studies of the TP heating effect.

  16. Observations and Modeling of Turbulent Air-Sea Coupling in Coastal and Strongly Forced Condition

    Science.gov (United States)

    Ortiz-Suslow, David G.

    The turbulent fluxes of momentum, mass, and energy across the ocean-atmosphere boundary are fundamental to our understanding of a myriad of geophysical processes, such as wind-wave generation, oceanic circulation, and air-sea gas transfer. In order to better understand these fluxes, empirical relationships were developed to quantify the interfacial exchange rates in terms of easily observed parameters (e.g., wind speed). However, mounting evidence suggests that these empirical formulae are only valid over the relatively narrow parametric space, i.e. open ocean conditions in light to moderate winds. Several near-surface processes have been observed to cause significant variance in the air-sea fluxes not predicted by the conventional functions, such as a heterogeneous surfaces, swell waves, and wave breaking. Further study is needed to fully characterize how these types of processes can modulate the interfacial exchange; in order to achieve this, a broad investigation into air-sea coupling was undertaken. The primary focus of this work was to use a combination of field and laboratory observations and numerical modeling, in regimes where conventional theories would be expected to breakdown, namely: the nearshore and in very high winds. These seemingly disparate environments represent the marine atmospheric boundary layer at its physical limit. In the nearshore, the convergence of land, air, and sea in a depth-limited domain marks the transition from a marine to a terrestrial boundary layer. Under extreme winds, the physical nature of the boundary layer remains unknown as an intermediate substrate layer, sea spray, develops between the atmosphere and ocean surface. At these ends of the MABL physical spectrum, direct measurements of the near-surface processes were made and directly related to local sources of variance. Our results suggest that the conventional treatment of air-sea fluxes in terms of empirical relationships developed from a relatively narrow set of

  17. Results of the Royal Society Joint Air-Sea Interaction Project (JASIN): proceedings of a Royal Society discussion meeting held on 2 and 3 June 1982

    National Research Council Canada - National Science Library

    Charnock, H; Pollard, R. T

    1983-01-01

    ... of the North Atlantic about 150 km across with use of buoys, ships, balloons and aircraft to observe the structure of the upper ocean and the lower atmosphere, and their interaction with each other and with...

  18. The potential role of sea spray droplets in facilitating air-sea gas transfer

    Science.gov (United States)

    Andreas, E. L.; Vlahos, P.; Monahan, E. C.

    2016-05-01

    For over 30 years, air-sea interaction specialists have been evaluating and parameterizing the role of whitecap bubbles in air-sea gas exchange. To our knowledge, no one, however, has studied the mirror image process of whether sea spray droplets can facilitate air-sea gas exchange. We are therefore using theory, data analysis, and numerical modeling to quantify the role of spray on air-sea gas transfer. In this, our first formal work on this subject, we seek the rate-limiting step in spray-mediated gas transfer by evaluating the three time scales that govern the exchange: τ air , which quantifies the rate of transfer between the atmospheric gas reservoir and the surface of the droplet; τ int , which quantifies the exchange rate across the air-droplet interface; and τ aq , which quantifies gas mixing within the aqueous solution droplet.

  19. Influence of the monsoon trough on air-sea interaction in the head of the Bay of Bengal during the southwest monsoon of 1990 (monsoon trough boundary layer experiment - 90)

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, Y.V.B.; Seetaramayya, P.; Murty, V.S.N.; Rao, D.P.

    programme reveals considerable temporal variability in sea-level pressure, sea-surface temperature (SST) and the fluxes of heat and momentum at the air-sea interface. This variability is related closely to the north-south movement of the monsoon trough...

  20. Air-sea interactions and exchanges

    Digital Repository Service at National Institute of Oceanography (India)

    Naqvi, S.W.A

    To support the idea that the Arabian Sea makes a significant contribution to biogeochemical ocean-atmosphere transfer processes, quantification of parameters such as carbon dioxide, nitrous oxide, methane, ammonia and dimethylsulphide was carried...

  1. RV SONNE SO243 Cruise Report / Fahrtbericht Guayaquil, Ecuador: 05. October 2015 Antofagasta, Chile: 22. October 2015 SO243 ASTRA-OMZ: AIR SEA INTERACTION OF TRACE ELEMENTS IN OXYGEN MINIMUM ZONES

    OpenAIRE

    Marandino, Christa A.

    2016-01-01

    The ASTRA-OMZ SO243 cruise on board the R/V Sonne took place between the 5th and 22nd October 2015 from Guayaquil, Ecuador to Antofagasta, Chile. Scientists from Germany, the U.S.A, and Norway participated, spanning chemical, biological, and physical oceanography, as well as atmospheric science. The main goal of the cruise was to determine the impact of low oxygen conditions on trace element cycling and distributions, as well as to determine how air-sea exchange of trace elements is influence...

  2. Tracers of air-sea gas exchange

    International Nuclear Information System (INIS)

    Liss, P.S.

    1988-01-01

    The flux of gas across the air-sea interface is determined by the product of the interfacial concentration difference driving the exchange and a rate constant, often termed the transfer velocity. The concentration-difference term is generally obtained by direct measurement, whereas more indirect approaches are required to estimate the transfer velocity and its variation as a function of controlling parameters such as wind and sea state. Radioactive tracers have proved particularly useful in the estimation of air-sea transfer velocities and, recently, stable purposeful tracers have also started to be used. In this paper the use of the following tracers to determine transfer velocities at the sea surface is discussed: natural and bomb-produced 14 C, dissolved oxygen, 222 Rn and sulphur hexafluoride. Other topics covered include the relation between transfer velocity and wind speed as deduced from tracer and wind-tunnel studies, and the discrepancy between transfer velocities determined by using tracers and from eddy correlation measurements in the atmosphere. (author)

  3. Air-Sea Momentum and Enthalpy Exchange in Coupled Atmosphere-Wave-Ocean Modeling of Tropical Cyclones

    Science.gov (United States)

    Curcic, M.; Chen, S. S.

    2016-02-01

    The atmosphere and ocean are coupled through momentum, enthalpy, and mass fluxes. Accurate representation of these fluxes in a wide range of weather and climate conditions is one of major challenges in prediction models. Their current parameterizations are based on sparse observations in low-to-moderate winds and are not suited for high wind conditions such as tropical cyclones (TCs) and winter storms. In this study, we use the Unified Wave INterface - Coupled Model (UWIN-CM), a high resolution, fully-coupled atmosphere-wave-ocean model, to better understand the role of ocean surface waves in mediating air-sea momentum and enthalpy exchange in TCs. In particular, we focus on the explicit treatment of wave growth and dissipation for calculating atmospheric and oceanic stress, and its role in upper ocean mixing and surface cooling in the wake of the storm. Wind-wave misalignment and local wave disequilibrium result in difference between atmospheric and oceanic stress being largest on the left side of the storm. We find that explicit wave calculation in the coupled model reduces momentum transfer into the ocean by more than 10% on average, resulting in reduced cooling in TC's wake and subsequent weakening of the storm. We also investigate the impacts of sea surface temperature and upper ocean parameterization on air-sea enthalpy fluxes in the fully coupled model. High-resolution UWIN-CM simulations of TCs with various intensities and structure are conducted in this study to better understand the complex TC-ocean interaction and improve the representation of air-sea coupling processes in coupled prediction models.

  4. Air-sea heat exchange, an element of the water cycle

    Science.gov (United States)

    Chahine, M. T.

    1984-01-01

    The distribution and variation of water vapor, clouds and precipitation are examined. Principal driving forces for these distributions are energy exchange and evaporation at the air-sea interface, which are also important elements of air-sea interaction studies. The overall aim of air-sea interaction studies is to quantitatively determine mass, momentum and energy fluxes, with the goal of understanding the mechanisms controlling them. The results of general circulation simulations indicate that the atmosphere in mid-latitudes responds to changes in the oceanic surface conditions in the tropics. This correlation reflects the strong interaction between tropical and mid-latitude conditions caused by the transport of heat and momentum from the tropics. Studies of air-sea exchanges involve a large number of physica, chemical and dynamical processes including heat flux, radiation, sea-surface temperature, precipitation, winds and ocean currents. The fluxes of latent heat are studied and the potential use of satellite data in determining them evaluated. Alternative ways of inferring heat fluxes will be considered.

  5. Effects of air-sea coupling on the boreal summer intraseasonal oscillations over the tropical Indian Ocean

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Ailan [CMA, Key Open Laboratory for Tropical Monsoon, Institute of Tropical and Marine Meteorology, Guangzhou (China); Li, Tim [CMA, Key Open Laboratory for Tropical Monsoon, Institute of Tropical and Marine Meteorology, Guangzhou (China); University of Hawaii, IPRC, Honolulu, Hawaii (United States); University of Hawaii, Department of Meteorology, Honolulu, Hawaii (United States); Fu, Xiouhua [University of Hawaii, IPRC, Honolulu, Hawaii (United States); Luo, Jing-Jia; Masumoto, Yukio [Research Institute for Global Change, JAMSTEC, Yokohama (Japan)

    2011-12-15

    The effects of air-sea coupling over the tropical Indian Ocean (TIO) on the eastward- and northward-propagating boreal summer intraseasonal oscillation (BSISO) are investigated by comparing a fully coupled (CTL) and a partially decoupled Indian Ocean (pdIO) experiment using SINTEX-F coupled GCM. Air-sea coupling over the TIO significantly enhances the intensity of both the eastward and northward propagations of the BSISO. The maximum spectrum differences of the northward- (eastward-) propagating BSISO between the CTL and pdIO reach 30% (25%) of their respective climatological values. The enhanced eastward (northward) propagation is related to the zonal (meridional) asymmetry of sea surface temperature anomaly (SSTA). A positive SSTA appears to the east (north) of the BSISO convection, which may positively feed back to the BSISO convection. In addition, air-sea coupling may enhance the northward propagation through the changes of the mean vertical wind shear and low-level specific humidity. The interannual variations of the TIO regulate the air-sea interaction effect. Air-sea coupling enhances (reduces) the eastward-propagating spectrum during the negative Indian Ocean dipole (IOD) mode, positive Indian Ocean basin (IOB) mode and normal years (during positive IOD and negative IOB years). Such phase dependence is attributed to the role of the background mean westerly in affecting the wind-evaporation-SST feedback. A climatological weak westerly in the equatorial Indian Ocean can be readily reversed by anomalous zonal SST gradients during the positive IOD and negative IOB events. Although the SSTA is always positive to the northeast of the BSISO convection for all interannual modes, air-sea coupling reduces the zonal asymmetry of the low-level specific humidity and thus the eastward propagation spectrum during the positive IOD and negative IOB modes, while strengthening them during the other modes. Air-sea coupling enhances the northward propagation under all

  6. Satellite Observations of Imprint of Oceanic Current on Wind Stress by Air-Sea Coupling.

    Science.gov (United States)

    Renault, Lionel; McWilliams, James C; Masson, Sebastien

    2017-12-18

    Mesoscale eddies are present everywhere in the ocean and partly determine the mean state of the circulation and ecosystem. The current feedback on the surface wind stress modulates the air-sea transfer of momentum by providing a sink of mesoscale eddy energy as an atmospheric source. Using nine years of satellite measurements of surface stress and geostrophic currents over the global ocean, we confirm that the current-induced surface stress curl is linearly related to the current vorticity. The resulting coupling coefficient between current and surface stress (s τ [N s m -3 ]) is heterogeneous and can be roughly expressed as a linear function of the mean surface wind. s τ expresses the sink of eddy energy induced by the current feedback. This has important implications for air-sea interaction and implies that oceanic mean and mesoscale circulations and their effects on surface-layer ventilation and carbon uptake are better represented in oceanic models that include this feedback.

  7. A Unified Air-Sea Interface in Fully Coupled Atmosphere-Wave-Ocean Models for Data Assimilation and Ensemble Prediction

    Science.gov (United States)

    Chen, Shuyi; Curcic, Milan; Donelan, Mark; Campbell, Tim; Smith, Travis; Chen, Sue; Allard, Rick; Michalakes, John

    2014-05-01

    The goals of this study are to 1) better understand the physical processes controlling air-sea interaction and their impact on coastal marine and storm predictions, 2) explore the use of coupled atmosphere-ocean observations in model verification and data assimilation, and 3) develop a physically based and computationally efficient coupling at the air-sea interface that is flexible for use in a multi-model system and portable for transition to the next generation research and operational coupled atmosphere-wave-ocean-land models. We have developed a unified air-sea interface module that couples multiple atmosphere, wave, and ocean models using the Earth System Modeling Framework (ESMF). This standardized coupling framework allows researchers to develop and test air-sea coupling parameterizations and coupled data assimilation, and to better facilitate research-to-operation activities. It also allows for future ensemble forecasts using coupled models that can be used for coupled data assimilation and assessment of uncertainties in coupled model predictions. The current component models include two atmospheric models (WRF and COAMPS), two ocean models (HYCOM and NCOM), and two wave models (UMWM and SWAN). The coupled modeling systems have been tested and evaluated using the coupled air-sea observations (e.g., GPS dropsondes and AXBTs, drifters and floats) collected in recent field campaigns in the Gulf of Mexico and tropical cyclones in the Atlantic and Pacific basins. This talk will provide an overview of the unified air-sea interface model and fully coupled atmosphere-wave-ocean model predictions over various coastal regions and tropical cyclones in the Pacific and Atlantic basins including an example from coupled ensemble prediction of Superstorm Sandy (2012).

  8. Kolmogorov's constant and local interactions

    International Nuclear Information System (INIS)

    Kraichnan, R.H.

    1987-01-01

    Suppose that all the wave-vector triad interactions that involve no wavenumber ratio that exceeds β are removed from the Navier--Stokes equation. Within a class of closures, the paradoxical effect is to enhance energy cascade through the Kolmogorov inertial range for 1<β<β/sub c/, where β/sub c/ may be as large as 8. This may have implications with regard to force-free structures in the true Navier--Stokes dynamics

  9. Global changes and the air-sea exchange of chemicals

    International Nuclear Information System (INIS)

    1991-01-01

    Present and potential future changes to the global environment have important implications for marine pollution and for the air-sea exchange of both anthropogenic and natural substances. This report addresses three issues related to the potential impact of global change on the air-sea exchange of chemicals: Global change and the air-sea transfer of the nutrients nitrogen and iron. Global change and the air-sea exchange of gases. Oceanic responses to radiative and oxidative changes in the atmosphere. The deposition of atmospheric anthropogenic nitrogen has probably increased biological productivity in coastal regions along many continental margins. Atmospheric deposition of new nitrogen may also have increased productivity somewhat in mid-ocean regions. The projected future increases of nitrogen oxide emissions from Asia, Africa and South America will provide significant increases in the rate of deposition of oxidized nitrogen to the central North Pacific, the equatorial Atlantic, and the equatorial and central South Indian Oceans. Atmospheric iron may be an important nutrient in certain open regions. Future changes will likely occur if there are changing patterns of aridity and wind speed as a result of climate change. The most important future effects on surface ocean p CO2 will likely be caused by changes in ocean circulation. The pH of the ocean would decrease by ∼0.3 units for a doubling of p CO2 , reducing the capacity of the ocean to take up CO 2 . There is increasing evidence that dimethyl sulfide from the ocean is a source of cloud condensation nuclei and thus a factor controlling cloud albedo. By 2060 in the southern hemisphere reduction in total column stratospheric ozone from recent levels could reach 2 to 5% in the tropics, 10% at mid latitudes, and over 20% at 60 deg C. S. In this same time frame increases in ground-level effective UV-B radiation could reach 5%, 26% and 66%, at low, mid, and high latitudes in the southern hemisphere. Changes in

  10. CLOUDS, AEROSOLS, RADIATION AND THE AIR-SEA INTERFACE OF THE SOUTHERN OCEAN: ESTABLISHING DIRECTIONS FOR FUTURE RESEARCH

    Energy Technology Data Exchange (ETDEWEB)

    Wood, Robert [University of Washington; Bretherton, Chris [University of Washington; McFarquhar, Greg [University of Illinois - Urbana; Protat, Alain [Bureau of Meteorology - Melbourne; Quinn, Patricia [NOAA PMEL; Siems, Steven [Monash Univ., Melbourne, VIC (Australia); Jakob, Christian [Monash Univ., Melbourne, VIC (Australia); Alexander, Simon [Australian Antarctic Division; Weller, Bob [Woods Hole Oceanographic Institute

    2014-09-29

    A workshop sponsored by the Department of Energy was convened at the University of Washington to discuss the state of knowledge of clouds, aerosols and air-sea interaction over the Southern Ocean and to identify strategies for reducing uncertainties in their representation in global and regional models. The Southern Ocean plays a critical role in the global climate system and is a unique pristine environment, yet other than from satellite, there have been sparse observations of clouds, aerosols, radiation and the air-sea interface in this region. Consequently, much is unknown about atmospheric and oceanographic processes and their linkage in this region. Approximately 60 scientists, including graduate students, postdoctoral fellows and senior researchers working in atmospheric and oceanic sciences at U.S. and foreign universities and government laboratories, attended the Southern Ocean Workshop. It began with a day of scientific talks, partly in plenary and partly in two parallel sessions, discussing the current state of the science for clouds, aerosols and air-sea interaction in the Southern Ocean. After the talks, attendees broke into two working groups; one focused on clouds and meteorology, and one focused on aerosols and their interactions with clouds. This was followed by more plenary discussion to synthesize the two working group discussions and to consider possible plans for organized activities to study clouds, aerosols and the air-sea interface in the Southern Ocean. The agenda and talk slides, including short summaries of the highlights of the parallel session talks developed by the session chars, are available at http://www.atmos.washington.edu/socrates/presentations/SouthernOceanPresentations/.

  11. Local simulation algorithms for Coulombic interactions

    Indian Academy of Sciences (India)

    We consider a problem in dynamically constrained Monte Carlo dynamics and show that this leads to the generation of long ranged effective interactions. This allows us to construct a local algorithm for the simulation of charged systems without ever having to evaluate pair potentials or solve the Poisson equation.

  12. Air-Sea Interaction Measurements from the Controlled Towed Vehicle

    Science.gov (United States)

    Khelif, D.; Bluth, R. T.; Jonsson, H.; Barge, J.

    2014-12-01

    The Controlled Towed Vehicle (CTV) uses improved towed drone technology to actively maintain via a radar altimeter and controllable wing a user-set height that can be as low as the canonical reference height of 10 m above the sea surface. After take-off, the drone is released from the tow aircraft on a ~700-m stainless steel cable. We have instrumented the 0.23 m diameter and 2.13 m long drone with high fidelity instruments to measure the means and turbulent fluctuations of 3-D wind vector, temperature, humidity, pressure, CO2 and IR sea surface temperature. Data are recorded internally at 40 Hz and simultaneously transmitted to the tow aircraft via dedicated wireless Ethernet link. The CTV accommodates 40 kg of instrument payload and provides it with 250 W of continuous power through a ram air propeller-driven generator. Therefore its endurance is only limited by that of the tow aircraft.We will discuss the CTV development, the engineering challenges and solutions that have been successfully implemented to overcome them. We present results from recent flights as low as 9 m over the coastal ocean and comparisons of profiles and turbulent fluxes from the CTV and the tow aircraft. Manned aircraft operation at low-level boundary-layer flights is very limited. Dropsondes and UAS (Unmanned Aerial Systems) and UAS are alternates for measurements near the ocean surface. However, dropsondes have limited sensor capability and do not measure fluxes, and most present UAS vehicles do not have the payload and power capacity nor the low-flying ability in high winds over the oceans. The CTV therefore, fills a needed gap between the dropsondes, in situ aircraft, and UAS. The payload, capacity and power of the CTV makes it suitable for a variety of atmospheric research measurements. Other sensors to measure aerosol, chemistry, radiation, etc., could be readily accommodated in the CTV.

  13. Air sea interaction during summer monsoon period of 1979

    Digital Repository Service at National Institute of Oceanography (India)

    RameshKumar, M.R.

    The present study highlights the utility of satellite derived parameters like SST, precipitation, CMV winds in the lower troposphere etc. in supplementing the in-situ observations. This information can lead to a better understanding of the monsoon...

  14. The Effect of Breaking Waves on CO_2 Air-Sea Fluxes in the Coastal Zone

    Science.gov (United States)

    Gutiérrez-Loza, Lucía; Ocampo-Torres, Francisco J.; García-Nava, Héctor

    2018-03-01

    The influence of wave-associated parameters controlling turbulent CO_2 fluxes through the air-sea interface is investigated in a coastal region. A full year of high-quality data of direct estimates of air-sea CO_2 fluxes based on eddy-covariance measurements is presented. The study area located in Todos Santos Bay, Baja California, Mexico, is a net sink of CO_2 with a mean flux of -1.3 μmol m^{-2}s^{-1} (-41.6 mol m^{-2}yr^{-1} ). The results of a quantile-regression analysis computed between the CO_2 flux and, (1) wind speed, (2) significant wave height, (3) wave steepness, and (4) water temperature, suggest that the significant wave height is the most correlated parameter with the magnitude of the flux but the behaviour of the relation varies along the probability distribution function, with the slopes of the regression lines presenting both positive and negative values. These results imply that the presence of surface waves in coastal areas is the key factor that promotes the increase of the flux from and into the ocean. Further analysis suggests that the local characteristics of the aqueous and atmospheric layers might determine the direction of the flux.

  15. Avoiding Local Optima with Interactive Evolutionary Robotics

    Science.gov (United States)

    2012-07-09

    the top of a flight of stairs selects for climbing ; suspending the robot and the target object above the ground and creating rungs between the two will...REPORT Avoiding Local Optimawith Interactive Evolutionary Robotics 14. ABSTRACT 16. SECURITY CLASSIFICATION OF: The main bottleneck in evolutionary... robotics has traditionally been the time required to evolve robot controllers. However with the continued acceleration in computational resources, the

  16. High air-sea CO 2 uptake rates in nearshore and shelf areas of Southern Greenland: Temporal and spatial variability

    DEFF Research Database (Denmark)

    Rysgaard, Søren; Mortensen, J.; Juul-Pedersen, T.

    2012-01-01

    significant correlation between average annual gross primary production and annual air-sea flux during 2005-2010, which suggests that regulation of pCO 2 in the fjord is more complex. Despite three confined periods with supersaturated pCO 2 conditions in surface waters during 2005-2010, Godthåbsfjord can......The present study is based on hourly samplings of wind speed, monthly sampling sessions of temperature, salinity, dissolved inorganic carbon, alkalinity, nutrients, primary productivity and vertical export in the outer sill region (station GF3) of a sub-arctic SW Greenland fjord (Godthåbsfjord......) through 2005-2010. Air-sea CO 2 fluxes varied at GF3 from c. -20gCm -2month -1 (uptake from the atmosphere) to 25gCm -2month -1 (release to the atmosphere) during 2005-10. The average annual air-sea CO 2 flux of -83 to -108gCm -2yr -1 was within the range of the local gross annual primary productivity...

  17. Carbon dioxide in northern high latitude oceans: Anthropogenic increase and air-sea flux variability

    International Nuclear Information System (INIS)

    Omar, Abdirahman M.

    2003-01-01

    variability of about + - 10 % (paper IV). This was studied by using an empirical relationship between seawater fCO2 and SST. Gridded data of SST, sea level pressure, and wind speed were used in combination with data for atmospheric mole fraction of CO, to calculate the air-sea flux in the time period 1981 until 2001. Locally, and on a monthly time scale, the interannual variability is found to be higher, typically 20 - 40 %. Changes in wind speed and fCO2 in the atmosphere account for most of the interannual variations. (Author)

  18. Carbon dioxide in northern high latitude oceans: Anthropogenic increase and air-sea flux variability

    Energy Technology Data Exchange (ETDEWEB)

    Omar, Abdirahman M.

    2003-07-01

    flux in the northern North Atlantic is found to be 0.1 G ton, with an interannual variability of about {sup +}- 10 % (paper IV). This was studied by using an empirical relationship between seawater fCO2 and SST. Gridded data of SST, sea level pressure, and wind speed were used in combination with data for atmospheric mole fraction of CO, to calculate the air-sea flux in the time period 1981 until 2001. Locally, and on a monthly time scale, the interannual variability is found to be higher, typically 20 - 40 %. Changes in wind speed and fCO2 in the atmosphere account for most of the interannual variations. (Author)

  19. User localization during human-robot interaction.

    Science.gov (United States)

    Alonso-Martín, F; Gorostiza, Javi F; Malfaz, María; Salichs, Miguel A

    2012-01-01

    This paper presents a user localization system based on the fusion of visual information and sound source localization, implemented on a social robot called Maggie. One of the main requisites to obtain a natural interaction between human-human and human-robot is an adequate spatial situation between the interlocutors, that is, to be orientated and situated at the right distance during the conversation in order to have a satisfactory communicative process. Our social robot uses a complete multimodal dialog system which manages the user-robot interaction during the communicative process. One of its main components is the presented user localization system. To determine the most suitable allocation of the robot in relation to the user, a proxemic study of the human-robot interaction is required, which is described in this paper. The study has been made with two groups of users: children, aged between 8 and 17, and adults. Finally, at the end of the paper, experimental results with the proposed multimodal dialog system are presented.

  20. Using eddy covariance to measure the dependence of air-sea CO2 exchange rate on friction velocity

    Science.gov (United States)

    Landwehr, Sebastian; Miller, Scott D.; Smith, Murray J.; Bell, Thomas G.; Saltzman, Eric S.; Ward, Brian

    2018-03-01

    Parameterisation of the air-sea gas transfer velocity of CO2 and other trace gases under open-ocean conditions has been a focus of air-sea interaction research and is required for accurately determining ocean carbon uptake. Ships are the most widely used platform for air-sea flux measurements but the quality of the data can be compromised by airflow distortion and sensor cross-sensitivity effects. Recent improvements in the understanding of these effects have led to enhanced corrections to the shipboard eddy covariance (EC) measurements.Here, we present a revised analysis of eddy covariance measurements of air-sea CO2 and momentum fluxes from the Southern Ocean Surface Ocean Aerosol Production (SOAP) study. We show that it is possible to significantly reduce the scatter in the EC data and achieve consistency between measurements taken on station and with the ship underway. The gas transfer velocities from the EC measurements correlate better with the EC friction velocity (u*) than with mean wind speeds derived from shipboard measurements corrected with an airflow distortion model. For the observed range of wind speeds (u10 N = 3-23 m s-1), the transfer velocities can be parameterised with a linear fit to u*. The SOAP data are compared to previous gas transfer parameterisations using u10 N computed from the EC friction velocity with the drag coefficient from the Coupled Ocean-Atmosphere Response Experiment (COARE) model version 3.5. The SOAP results are consistent with previous gas transfer studies, but at high wind speeds they do not support the sharp increase in gas transfer associated with bubble-mediated transfer predicted by physically based models.

  1. Effect of coulomb interaction on Anderson localization

    International Nuclear Information System (INIS)

    Waintal, X.

    1999-01-01

    We study the quantum mechanics of interacting particles in a disordered system, and in particular, what happens to Anderson localisation when interaction is taken into account. In the first part, one looks at the excited states of two particles in one dimension. For this model, it has been shown (Shepelyansky 1994) that a local repulsive interaction can partially destroy Anderson localisation. Here, we show that this model has similarities with the three-dimensional Anderson model at the metal-insulator transition. In particular, the maximum of rigidity obtained in the spectral statistics correspond to some intermediary statistics that cannot be described by random matrix theory neither by a Poisson statistics. The wave functions show a multifractal behaviour and the spreading of the center of mass of a wave packet is logarithmic in time. The second part deals with the ground state of a finite density of spinless fermions in two dimensions. After the scaling theory of localisation, it was commonly accepted that there was no metal in two dimensions. This idea has been challenged by the observation of a metal-insulator transition in low density electron gas (Kravchenko et al. 1994). We propose a scenario in which a metallic phase occurs between the Anderson insulator and the pinned Wigner crystal. This intermediate phase is characterized by an alignment of the local currents flowing in the system. (author)

  2. Air-sea exchange over Black Sea estimated from high resolution regional climate simulations

    Science.gov (United States)

    Velea, Liliana; Bojariu, Roxana; Cica, Roxana

    2013-04-01

    Black Sea is an important influencing factor for the climate of bordering countries, showing cyclogenetic activity (Trigo et al, 1999) and influencing Mediterranean cyclones passing over. As for other seas, standard observations of the atmosphere are limited in time and space and available observation-based estimations of air-sea exchange terms present quite large ranges of uncertainty. The reanalysis datasets (e.g. ERA produced by ECMWF) provide promising validation estimates of climatic characteristics against the ones in available climatic data (Schrum et al, 2001), while cannot reproduce some local features due to relatively coarse horizontal resolution. Detailed and realistic information on smaller-scale processes are foreseen to be provided by regional climate models, due to continuous improvements of physical parameterizations and numerical solutions and thus affording simulations at high spatial resolution. The aim of the study is to assess the potential of three regional climate models in reproducing known climatological characteristics of air-sea exchange over Black Sea, as well as to explore the added value of the model compared to the input (reanalysis) data. We employ results of long-term (1961-2000) simulations performed within ENSEMBLE project (http://ensemblesrt3.dmi.dk/) using models ETHZ-CLM, CNRM-ALADIN, METO-HadCM, for which the integration domain covers the whole area of interest. The analysis is performed for the entire basin for several variables entering the heat and water budget terms and available as direct output from the models, at seasonal and annual scale. A comparison with independent data (ERA-INTERIM) and findings from other studies (e.g. Schrum et al, 2001) is also presented. References: Schrum, C., Staneva, J., Stanev, E. and Ozsoy, E., 2001: Air-sea exchange in the Black Sea estimated from atmospheric analysis for the period 1979-1993, J. Marine Systems, 31, 3-19 Trigo, I. F., T. D. Davies, and G. R. Bigg (1999): Objective

  3. Intense air-sea exchanges and heavy orographic precipitation over Italy: The role of Adriatic sea surface temperature uncertainty

    Science.gov (United States)

    Stocchi, Paolo; Davolio, Silvio

    2017-11-01

    Strong and persistent low-level winds blowing over the Adriatic basin are often associated with intense precipitation events over Italy. Typically, in case of moist southeasterly wind (Sirocco), rainfall affects northeastern Italy and the Alpine chain, while with cold northeasterly currents (Bora) precipitations are localized along the eastern slopes of the Apennines and central Italy coastal areas. These events are favoured by intense air-sea interactions and it is reasonable to hypothesize that the Adriatic sea surface temperature (SST) can affect the amount and location of precipitation. High-resolution simulations of different Bora and Sirocco events leading to severe precipitation are performed using a convection-permitting model (MOLOCH). Sensitivity experiments varying the SST initialization field are performed with the aim of evaluating the impact of SST uncertainty on precipitation forecasts, which is a relevant topic for operational weather predictions, especially at local scales. Moreover, diagnostic tools to compute water vapour fluxes across the Italian coast and atmospheric water budget over the Adriatic Sea have been developed and applied in order to characterize the air mass that feeds the precipitating systems. Finally, the investigation of the processes through which the SST influences location and intensity of heavy precipitation allows to gain a better understanding on mechanisms conducive to severe weather in the Mediterranean area and in the Adriatic basin in particular. Results show that the effect of the Adriatic SST (uncertainty) on precipitation is complex and can vary considerably among different events. For both Bora and Sirocco events, SST does not influence markedly the atmospheric water budget or the degree of moistening of air that flows over the Adriatic Sea. SST mainly affects the stability of the atmospheric boundary layer, thus influencing the flow dynamics and the orographic flow regime, and in turn, the precipitation pattern.

  4. Internal Guidelines for interactions with communities and local governments

    International Nuclear Information System (INIS)

    1985-11-01

    These Guidelines provide principles for interactions with local populations. Interaction with communities and local govenments are the responsibility of the Office of Civilian Radioactive Wastes Management program's implementing offices. The Guidelines provide policy direction to these implementing offices, while preserving their ability to tailor local interactions to fit a given situation, taking into account the social and political context and the history of local involvement in the program. Project Offices conduct community and local interactions within overall program resources which must be husbanded prudently. Careful planning by implementing offices should ensure that adequate resources are available to foster effective interactions with local representatives

  5. An analysis of warm pool and cold tongue El Ninos: air-sea coupling processes, global influences, and recent trends

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Zeng-Zhen; Kumar, Arun; Wang, Wanqiu [NCEP/NWS/NOAA, Climate Prediction Center, Camp Springs, MD (United States); Jha, Bhaskar; Huang, Boyin [NCEP/NWS/NOAA, Climate Prediction Center, Camp Springs, MD (United States); Wyle Information Systems, Camp Springs, MD (United States); Huang, Bohua [George Mason University, Department of Atmospheric, Oceanic, and Earth Sciences, College of Science, Fairfax, VA (United States); Center for Ocean-Land-Atmosphere Studies, Calverton, MD (United States)

    2012-05-15

    The differences in tropical air-sea interactions and global climate connection as well as the hindcast skills for the warm pool (WP) and cold tongue (CT) El Ninos are investigated based on observed, (re)analyzed, and model hindcast data. The robustness of observed global climate connection is established from the model simulations. Lastly, variations of atmosphere and ocean conditions in the recent decades, and their possible connection with the frequency increase of the WP El Nino are discussed. Consistent with previous results, our individual case study and composite results suggest that stronger (weaker) and more eastward extended (westward confined) westerly wind along the equatorial Pacific in early months of a year is associated with active (suppressed) air-sea interaction over the cold tongue/the Intertropical Convergence Zone complex, as well as more (less) intensive oceanic thermocline feedback, favoring the CT (WP) El Nino development. The preceding westerly wind signal and air-sea interaction differences may be responsible for the predication skill difference with higher (lower) overall hindcast skill for the CT (WP) El Nino in the Climate Forecast System of National Centers for Environmental Prediction. Our model experiments show that, in addition to the tropics, the eastern Pacific, North America and North Atlantic are the major regions having robust climate differences between the CT and WP El Ninos. Nevertheless, the climate contrasts seem not robust over the Eurasian continent. Also, the frequency increase of the WP El Nino in the recent decades may not be directly connected with the linear trend of the tropical climate. (orig.)

  6. Bottom-Up Determination of Air-Sea Momentum Exchange Under a Major Tropical Cyclone

    National Research Council Canada - National Science Library

    Jarosz, Ewa; Mitchell, Douglas A; Wang, David W; Teague, William J

    2007-01-01

    .... Using current observations recorded during a major tropical cyclone, we have estimated this momentum transfer from the ocean side of the air-sea interface, and we discuss it in terms of the drag coefficient...

  7. Meaningful Interaction in a Local Context

    DEFF Research Database (Denmark)

    Holck, Ulla

    2006-01-01

    This keynote is based on a Ph.D. thesis on development of socially meaningful interaction in music therapy with children with very poor communication skills (Holck 2002). The aim was to identify some of the conditions, whereby actions can be understood as meaningful - that is, whereby the child......’ Samspil i Musikterapi [Eng.: ’Commusical’ Interplay in Music Therapy. Qualitative Video Analyses of Musical and Gestural Interactions with Children with Severe Functional Limitations, including Children with Autism]. Unpubl. PhD thesis, Aalborg Universitet. Holck, U. (2004) Interaction Themes in Music...

  8. Interaction of Number Magnitude and Auditory Localization.

    Science.gov (United States)

    Golob, Edward J; Lewald, Jörg; Jungilligens, Johannes; Getzmann, Stephan

    2016-01-01

    The interplay of perception and memory is very evident when we perceive and then recognize familiar stimuli. Conversely, information in long-term memory may also influence how a stimulus is perceived. Prior work on number cognition in the visual modality has shown that in Western number systems long-term memory for the magnitude of smaller numbers can influence performance involving the left side of space, while larger numbers have an influence toward the right. Here, we investigated in the auditory modality whether a related effect may bias the perception of sound location. Subjects (n = 28) used a swivel pointer to localize noise bursts presented from various azimuth positions. The noise bursts were preceded by a spoken number (1-9) or, as a nonsemantic control condition, numbers that were played in reverse. The relative constant error in noise localization (forward minus reversed speech) indicated a systematic shift in localization toward more central locations when the number was smaller and toward more peripheral positions when the preceding number magnitude was larger. These findings do not support the traditional left-right number mapping. Instead, the results may reflect an overlap between codes for number magnitude and codes for sound location as implemented by two channel models of sound localization, or possibly a categorical mapping stage of small versus large magnitudes. © The Author(s) 2015.

  9. Air-sea fluxes of CO2 and CH4 from the Penlee Point Atmospheric Observatory on the south-west coast of the UK

    Science.gov (United States)

    Yang, Mingxi; Bell, Thomas G.; Hopkins, Frances E.; Kitidis, Vassilis; Cazenave, Pierre W.; Nightingale, Philip D.; Yelland, Margaret J.; Pascal, Robin W.; Prytherch, John; Brooks, Ian M.; Smyth, Timothy J.

    2016-05-01

    We present air-sea fluxes of carbon dioxide (CO2), methane (CH4), momentum, and sensible heat measured by the eddy covariance method from the recently established Penlee Point Atmospheric Observatory (PPAO) on the south-west coast of the United Kingdom. Measurements from the south-westerly direction (open water sector) were made at three different sampling heights (approximately 15, 18, and 27 m above mean sea level, a.m.s.l.), each from a different period during 2014-2015. At sampling heights ≥ 18 m a.m.s.l., measured fluxes of momentum and sensible heat demonstrate reasonable ( ≤ ±20 % in the mean) agreement with transfer rates over the open ocean. This confirms the suitability of PPAO for air-sea exchange measurements in shelf regions. Covariance air-sea CO2 fluxes demonstrate high temporal variability. Air-to-sea transport of CO2 declined from spring to summer in both years, coinciding with the breakdown of the spring phytoplankton bloom. We report, to the best of our knowledge, the first successful eddy covariance measurements of CH4 emissions from a marine environment. Higher sea-to-air CH4 fluxes were observed during rising tides (20 ± 3; 38 ± 3; 29 ± 6 µmole m-2 d-1 at 15, 18, 27 m a.m.s.l.) than during falling tides (14 ± 2; 22 ± 2; 21 ± 5 µmole m-2 d-1), consistent with an elevated CH4 source from an estuarine outflow driven by local tidal circulation. These fluxes are a few times higher than the predicted CH4 emissions over the open ocean and are significantly lower than estimates from other aquatic CH4 hotspots (e.g. polar regions, freshwater). Finally, we found the detection limit of the air-sea CH4 flux by eddy covariance to be 20 µmole m-2 d-1 over hourly timescales (4 µmole m-2 d-1 over 24 h).

  10. A generalized model for the air-sea transfer of dimethyl sulfide at high wind speeds

    Science.gov (United States)

    Vlahos, Penny; Monahan, Edward C.

    2009-11-01

    The air-sea exchange of dimethyl sulfide (DMS) is an important component of ocean biogeochemistry and global climate models. Both laboratory experiments and field measurements of DMS transfer rates have shown that the air-sea flux of DMS is analogous to that of other significant greenhouse gases such as CO2 at low wind speeds (10 m/s. The result is an attenuation of the dimensionless Henry's Law constant (H) where (Heff = H/(1 + (Cmix/Cw) ΦB) by a solubility enhancement Cmix/Cw, and the fraction of bubble surface area per m2 surface ocean.

  11. Changes in ocean circulation and carbon storage are decoupled from air-sea CO2 fluxes

    Science.gov (United States)

    Marinov, I.; Gnanadesikan, A.

    2011-02-01

    The spatial distribution of the air-sea flux of carbon dioxide is a poor indicator of the underlying ocean circulation and of ocean carbon storage. The weak dependence on circulation arises because mixing-driven changes in solubility-driven and biologically-driven air-sea fluxes largely cancel out. This cancellation occurs because mixing driven increases in the poleward residual mean circulation result in more transport of both remineralized nutrients and heat from low to high latitudes. By contrast, increasing vertical mixing decreases the storage associated with both the biological and solubility pumps, as it decreases remineralized carbon storage in the deep ocean and warms the ocean as a whole.

  12. Managing for interactions between local and global stressors of ecosystems.

    Science.gov (United States)

    Brown, Christopher J; Saunders, Megan I; Possingham, Hugh P; Richardson, Anthony J

    2013-01-01

    Global stressors, including climate change, are a major threat to ecosystems, but they cannot be halted by local actions. Ecosystem management is thus attempting to compensate for the impacts of global stressors by reducing local stressors, such as overfishing. This approach assumes that stressors interact additively or synergistically, whereby the combined effect of two stressors is at least the sum of their isolated effects. It is not clear, however, how management should proceed for antagonistic interactions among stressors, where multiple stressors do not have an additive or greater impact. Research to date has focussed on identifying synergisms among stressors, but antagonisms may be just as common. We examined the effectiveness of management when faced with different types of interactions in two systems--seagrass and fish communities--where the global stressor was climate change but the local stressors were different. When there were synergisms, mitigating local stressors delivered greater gains, whereas when there were antagonisms, management of local stressors was ineffective or even degraded ecosystems. These results suggest that reducing a local stressor can compensate for climate change impacts if there is a synergistic interaction. Conversely, if there is an antagonistic interaction, management of local stressors will have the greatest benefits in areas of refuge from climate change. A balanced research agenda, investigating both antagonistic and synergistic interaction types, is needed to inform management priorities.

  13. Managing for interactions between local and global stressors of ecosystems.

    Directory of Open Access Journals (Sweden)

    Christopher J Brown

    Full Text Available Global stressors, including climate change, are a major threat to ecosystems, but they cannot be halted by local actions. Ecosystem management is thus attempting to compensate for the impacts of global stressors by reducing local stressors, such as overfishing. This approach assumes that stressors interact additively or synergistically, whereby the combined effect of two stressors is at least the sum of their isolated effects. It is not clear, however, how management should proceed for antagonistic interactions among stressors, where multiple stressors do not have an additive or greater impact. Research to date has focussed on identifying synergisms among stressors, but antagonisms may be just as common. We examined the effectiveness of management when faced with different types of interactions in two systems--seagrass and fish communities--where the global stressor was climate change but the local stressors were different. When there were synergisms, mitigating local stressors delivered greater gains, whereas when there were antagonisms, management of local stressors was ineffective or even degraded ecosystems. These results suggest that reducing a local stressor can compensate for climate change impacts if there is a synergistic interaction. Conversely, if there is an antagonistic interaction, management of local stressors will have the greatest benefits in areas of refuge from climate change. A balanced research agenda, investigating both antagonistic and synergistic interaction types, is needed to inform management priorities.

  14. Structure of local interactions in complex financial dynamics.

    Science.gov (United States)

    Jiang, X F; Chen, T T; Zheng, B

    2014-06-17

    With the network methods and random matrix theory, we investigate the interaction structure of communities in financial markets. In particular, based on the random matrix decomposition, we clarify that the local interactions between the business sectors (subsectors) are mainly contained in the sector mode. In the sector mode, the average correlation inside the sectors is positive, while that between the sectors is negative. Further, we explore the time evolution of the interaction structure of the business sectors, and observe that the local interaction structure changes dramatically during a financial bubble or crisis.

  15. STABLE STATIONARY STATES OF NON-LOCAL INTERACTION EQUATIONS

    KAUST Repository

    FELLNER, KLEMENS; RAOUL, GAË L

    2010-01-01

    .r.t. shifts and reallocations of individual Dirac masses, and (iii) show that these linear stability conditions imply local non-linear stability. Finally, we show that for regular repulsive interaction potential Wε converging to a singular repulsive

  16. Localization of weakly interacting Bose gas in quasiperiodic potential

    International Nuclear Information System (INIS)

    Ray, Sayak; Pandey, Mohit; Ghosh, Anandamohan; Sinha, Subhasis

    2016-01-01

    We study the localization properties of weakly interacting Bose gas in a quasiperiodic potential. The Hamiltonian of the non-interacting system reduces to the well known ‘Aubry–André model’, which shows the localization transition at a critical strength of the potential. In the presence of repulsive interaction we observe multi-site localization and obtain a phase diagram of the dilute Bose gas by computing the superfluid fraction and the inverse participation ratio. We construct a low-dimensional classical Hamiltonian map and show that the onset of localization is manifested by the chaotic phase space dynamics. The level spacing statistics also identify the transition to localized states resembling a Poisson distribution that are ubiquitous for both non-interacting and interacting systems. We also study the quantum fluctuations within the Bogoliubov approximation and compute the quasiparticle energy spectrum. Enhanced quantum fluctuation and multi-site localization phenomenon of non-condensate density are observed above the critical coupling of the potential. We briefly discuss the effect of the trapping potential on the localization of matter wave. (paper)

  17. Dimensionality of Local Minimizers of the Interaction Energy

    KAUST Repository

    Balagué, D.

    2013-05-22

    In this work we consider local minimizers (in the topology of transport distances) of the interaction energy associated with a repulsive-attractive potential. We show how the dimensionality of the support of local minimizers is related to the repulsive strength of the potential at the origin. © 2013 Springer-Verlag Berlin Heidelberg.

  18. Dimensionality of Local Minimizers of the Interaction Energy

    KAUST Repository

    Balagué , D.; Carrillo, J. A.; Laurent, T.; Raoul, G.

    2013-01-01

    In this work we consider local minimizers (in the topology of transport distances) of the interaction energy associated with a repulsive-attractive potential. We show how the dimensionality of the support of local minimizers is related to the repulsive strength of the potential at the origin. © 2013 Springer-Verlag Berlin Heidelberg.

  19. The Philosophy of Local Studies in the Interactive Age

    Science.gov (United States)

    Reid, Peter H.; Macafee, Caroline

    2007-01-01

    The authors examine strategic priorities for local studies libraries in the context of the interactive Web. They examine the implications for access, investigations and the needs of different users. The philosophy that has previously guided local studies is articulated as a number of maxims, taking into account also social inclusion and lifelong…

  20. Regional air-sea coupled model simulation for two types of extreme heat in North China

    Science.gov (United States)

    Li, Donghuan; Zou, Liwei; Zhou, Tianjun

    2018-03-01

    Extreme heat (EH) over North China (NC) is affected by both large scale circulations and local topography, and could be categorized into foehn favorable and no-foehn types. In this study, the performance of a regional coupled model in simulating EH over NC was examined. The effects of regional air-sea coupling were also investigated by comparing the results with the corresponding atmosphere-alone regional model. On foehn favorable (no-foehn) EH days, a barotropic cyclonic (anticyclonic) anomaly is located to the northeast (northwest) of NC, while anomalous northwesterlies (southeasterlies) prevail over NC in the lower troposphere. In the uncoupled simulation, barotropic anticyclonic bias occurs over China on both foehn favorable and no-foehn EH days, and the northwesterlies in the lower troposphere on foehn favorable EH days are not obvious. These biases are significantly reduced in the regional coupled simulation, especially on foehn favorable EH days with wind anomalies skill scores improving from 0.38 to 0.47, 0.47 to 0.61 and 0.38 to 0.56 for horizontal winds at 250, 500 and 850 hPa, respectively. Compared with the uncoupled simulation, the reproduction of the longitudinal position of Northwest Pacific subtropical high (NPSH) and the spatial pattern of the low-level monsoon flow over East Asia are improved in the coupled simulation. Therefore, the anticyclonic bias over China is obviously reduced, and the proportion of EH days characterized by anticyclonic anomaly is more appropriate. The improvements in the regional coupled model indicate that it is a promising choice for the future projection of EH over NC.

  1. Impacts of ENSO on air-sea oxygen exchange: Observations and mechanisms

    Science.gov (United States)

    Eddebbar, Yassir A.; Long, Matthew C.; Resplandy, Laure; Rödenbeck, Christian; Rodgers, Keith B.; Manizza, Manfredi; Keeling, Ralph F.

    2017-05-01

    Models and observations of atmospheric potential oxygen (APO ≃ O2 + 1.1 * CO2) are used to investigate the influence of El Niño-Southern Oscillation (ENSO) on air-sea O2 exchange. An atmospheric transport inversion of APO data from the Scripps flask network shows significant interannual variability in tropical APO fluxes that is positively correlated with the Niño3.4 index, indicating anomalous ocean outgassing of APO during El Niño. Hindcast simulations of the Community Earth System Model (CESM) and the Institut Pierre-Simon Laplace model show similar APO sensitivity to ENSO, differing from the Geophysical Fluid Dynamics Laboratory model, which shows an opposite APO response. In all models, O2 accounts for most APO flux variations. Detailed analysis in CESM shows that the O2 response is driven primarily by ENSO modulation of the source and rate of equatorial upwelling, which moderates the intensity of O2 uptake due to vertical transport of low-O2 waters. These upwelling changes dominate over counteracting effects of biological productivity and thermally driven O2 exchange. During El Niño, shallower and weaker upwelling leads to anomalous O2 outgassing, whereas deeper and intensified upwelling during La Niña drives enhanced O2 uptake. This response is strongly localized along the central and eastern equatorial Pacific, leading to an equatorial zonal dipole in atmospheric anomalies of APO. This dipole is further intensified by ENSO-related changes in winds, reconciling apparently conflicting APO observations in the tropical Pacific. These findings suggest a substantial and complex response of the oceanic O2 cycle to climate variability that is significantly (>50%) underestimated in magnitude by ocean models.

  2. Local and dynamic properties of light interacting with subwavelength holes

    NARCIS (Netherlands)

    Prangsma, Jord

    2009-01-01

    The discovery of the extraordinary transmission phenomena has initiated an intense study of the interaction of light with subwavelength holes. In this thesis the dynamic and local properties of light interacting with subwavelength holes are investigated. First of all the role of hole shape on the

  3. Observational analysis of air-sea fluxes and sea water temperature offshore South China Sea

    Science.gov (United States)

    Bi, X.; Huang, J.; Gao, Z.; Liu, Y.

    2017-12-01

    This paper investigates the air-sea fluxes (momentum flux, sensible heat flux and latent heat flux) from eddy covariance method based on data collected at an offshore observation tower in the South China Sea from January 2009 to December 2016 and sea water temperature (SWT) on six different levels based on data collected from November 2011 to June 2013. The depth of water at the tower over the sea averages about 15 m. This study presents the in-situ measurements of continuous air-sea fluxes and SWT at different depths. Seasonal and diurnal variations in air-sea fluxes and SWT on different depths are examined. Results show that air-sea fluxes and all SWT changed seasonally; sea-land breeze circulation appears all the year round. Unlike winters where SWT on different depths are fairly consistent, the difference between sea surface temperature (SST) and sea temperature at 10 m water depth fluctuates dramatically and the maximum value reaches 7 °C during summer.

  4. TropFlux: air-sea fluxes for the global tropical oceans-description and evaluation

    Digital Repository Service at National Institute of Oceanography (India)

    PraveenKumar, B.; Vialard, J.; Lengaigne, M.; Murty, V.S.N.; McPhaden, M.J.

    This paper evaluates several timely, daily air-sea heat flux products (NCEP, NCEP2, ERA-Interim and OAFlux/ISCCP) against observations and present the newly developed TropFlux product. This new product uses bias-corrected ERA-interim and ISCCP data...

  5. New approaches for air-sea fluxes in the Southern Ocean

    CSIR Research Space (South Africa)

    Gille, S

    2016-05-01

    Full Text Available Air-sea exchanges in the Southern Ocean of momentum, heat, freshwater, carbon dioxide, and other gases are not well documented because fluxes are sparsely sampled (see Figure 1) and because high winds, high sea state, and lack of calibration...

  6. Interplay of Anderson localization and strong interaction in disordered systems

    International Nuclear Information System (INIS)

    Henseler, Peter

    2010-01-01

    We study the interplay of disorder localization and strong local interactions within the Anderson-Hubbard model. Taking into account local Mott-Hubbard physics and static screening of the disorder potential, the system is mapped onto an effective single-particle Anderson model, which is studied within the self-consistent theory of electron localization. For fermions, we find rich nonmonotonic behavior of the localization length ξ, particularly in two-dimensional systems, including an interaction-induced exponential enhancement of ξ for small and intermediate disorders and a strong reduction of ξ due to hopping suppression by strong interactions. In three dimensions, we identify for half filling a Mott-Hubbard-assisted Anderson localized phase existing between the metallic and the Mott-Hubbard-gapped phases. For small U there is re-entrant behavior from the Anderson localized phase to the metallic phase. For bosons, the unrestricted particle occupation number per lattice site yields a monotonic enhancement of ξ as a function of decreasing interaction, which we assume to persist until the superfluid Bose-Einstein condensate phase is entered. Besides, we study cold atomic gases expanding, by a diffusion process, in a weak random potential. We show that the density-density correlation function of the expanding gas is strongly affected by disorder and we estimate the typical size of a speckle spot, i.e., a region of enhanced or depleted density. Both a Fermi gas and a Bose-Einstein condensate (in a mean-field approach) are considered. (orig.)

  7. Interplay of Anderson localization and strong interaction in disordered systems

    Energy Technology Data Exchange (ETDEWEB)

    Henseler, Peter

    2010-01-15

    We study the interplay of disorder localization and strong local interactions within the Anderson-Hubbard model. Taking into account local Mott-Hubbard physics and static screening of the disorder potential, the system is mapped onto an effective single-particle Anderson model, which is studied within the self-consistent theory of electron localization. For fermions, we find rich nonmonotonic behavior of the localization length {xi}, particularly in two-dimensional systems, including an interaction-induced exponential enhancement of {xi} for small and intermediate disorders and a strong reduction of {xi} due to hopping suppression by strong interactions. In three dimensions, we identify for half filling a Mott-Hubbard-assisted Anderson localized phase existing between the metallic and the Mott-Hubbard-gapped phases. For small U there is re-entrant behavior from the Anderson localized phase to the metallic phase. For bosons, the unrestricted particle occupation number per lattice site yields a monotonic enhancement of {xi} as a function of decreasing interaction, which we assume to persist until the superfluid Bose-Einstein condensate phase is entered. Besides, we study cold atomic gases expanding, by a diffusion process, in a weak random potential. We show that the density-density correlation function of the expanding gas is strongly affected by disorder and we estimate the typical size of a speckle spot, i.e., a region of enhanced or depleted density. Both a Fermi gas and a Bose-Einstein condensate (in a mean-field approach) are considered. (orig.)

  8. STABLE STATIONARY STATES OF NON-LOCAL INTERACTION EQUATIONS

    KAUST Repository

    FELLNER, KLEMENS

    2010-12-01

    In this paper, we are interested in the large-time behaviour of a solution to a non-local interaction equation, where a density of particles/individuals evolves subject to an interaction potential and an external potential. It is known that for regular interaction potentials, stable stationary states of these equations are generically finite sums of Dirac masses. For a finite sum of Dirac masses, we give (i) a condition to be a stationary state, (ii) two necessary conditions of linear stability w.r.t. shifts and reallocations of individual Dirac masses, and (iii) show that these linear stability conditions imply local non-linear stability. Finally, we show that for regular repulsive interaction potential Wε converging to a singular repulsive interaction potential W, the Dirac-type stationary states ρ̄ ε approximate weakly a unique stationary state ρ̄ ∈ L∞. We illustrate our results with numerical examples. © 2010 World Scientific Publishing Company.

  9. Air-sea exchange studies at the North Sea

    NARCIS (Netherlands)

    Leeuw, G. de; Eijk, A.M.J. van; Kunz, G.J.; Veefkind, P.J.

    1996-01-01

    The North Sea can be considered as a local 'inner' sea in which many processes are quite different from these over the open ocean. The surrounding land has a major influence, being the source for man-made aerosols and gases, whereas the North Sea acts as a sink for these. At the same time the North

  10. Interactive Cosegmentation Using Global and Local Energy Optimization

    OpenAIRE

    Xingping Dong,; Jianbing Shen,; Shao, Ling; Yang, Ming-Hsuan

    2015-01-01

    We propose a novel interactive cosegmentation method using global and local energy optimization. The global energy includes two terms: 1) the global scribbled energy and 2) the interimage energy. The first one utilizes the user scribbles to build the Gaussian mixture model and improve the cosegmentation performance. The second one is a global constraint, which attempts to match the histograms of common objects. To minimize the local energy, we apply the spline regression to learn the smoothne...

  11. Mathematical models and methods of localized interaction theory

    CERN Document Server

    Bunimovich, AI

    1995-01-01

    The interaction of the environment with a moving body is called "localized" if it has been found or assumed that the force or/and thermal influence of the environment on each body surface point is independent and can be determined by the local geometrical and kinematical characteristics of this point as well as by the parameters of the environment and body-environment interactions which are the same for the whole surface of contact.Such models are widespread in aerodynamics and gas dynamics, covering supersonic and hypersonic flows, and rarefied gas flows. They describe the influence of light

  12. Separable expansions for local potentials with Coulomb interactions

    International Nuclear Information System (INIS)

    Adhikari, S.K.

    1976-01-01

    If two particles are interacting via a short range potential and a repulsive Coulomb potential the t matrix can be written as a sum of the Coulomb and the ''nuclear'' t matrices. In order to solve the three-nucleon problem with Coulomb interactions usually we need a separable representation of this ''nuclear'' t matrix. A recently proposed method for finding a separable expansion for local potentials is here extended to find a rapidly convergent separable expansion, with analytic form factors, for the ''nuclear'' part of the t matrix of a local potential, in the presence of Coulomb interactions. The method is illustrated for a two-term Malfliet-Tjon potential. In each rank the ''nuclear'' phase shift is close to the corresponding phase shift when the Coulomb interaction is switched off

  13. Localized bound states of fermions interacting via massive vector bosons

    International Nuclear Information System (INIS)

    Ionescu, D.C.; Reinhardt, J.; Mueller, B.; Greiner, W.; Soff, G.

    1988-11-01

    A model for composite consisting of fermions with internal degrees of freedom interacting via intermediate vector bosons (IVB) is constructed. We find highly localized, low-mass bound states in the Hartree-Fock approximation. We investigate the dependence of these states as function of the coupling constant and vector boson mass. In the limit of infinite vector boson mass the interaction is described by Fermi-type contact forces. (orig.)

  14. Nonequilibrium localization and the interplay between disorder and interactions

    International Nuclear Information System (INIS)

    Mascarenhas, Eduardo; Bragança, Helena; Aguiar, M C O; França Santos, M; Drumond, R

    2016-01-01

    We study the nonequilibrium interplay between disorder and interactions in a closed quantum system. We base our analysis on the notion of dynamical state-space localization, calculated via the Loschmidt echo. Although real-space and state-space localization are independent concepts in general, we show that both perspectives may be directly connected through a specific choice of initial states, namely, maximally localized states (ML-states). We show numerically that in the noninteracting case the average echo is found to be monotonically increasing with increasing disorder; these results are in agreement with an analytical evaluation in the single particle case in which the echo is found to be inversely proportional to the localization length. We also show that for interacting systems, the length scale under which equilibration may occur is upper bounded and such bound is smaller the greater the average echo of ML-states. When disorder and interactions, both being localization mechanisms, are simultaneously at play the echo features a non-monotonic behaviour indicating a non-trivial interplay of the two processes. This interplay induces delocalization of the dynamics which is accompanied by delocalization in real-space. This non-monotonic behaviour is also present in the effective integrability which we show by evaluating the gap statistics. (paper)

  15. Nonequilibrium localization and the interplay between disorder and interactions.

    Science.gov (United States)

    Mascarenhas, Eduardo; Bragança, Helena; Drumond, R; Aguiar, M C O; França Santos, M

    2016-05-18

    We study the nonequilibrium interplay between disorder and interactions in a closed quantum system. We base our analysis on the notion of dynamical state-space localization, calculated via the Loschmidt echo. Although real-space and state-space localization are independent concepts in general, we show that both perspectives may be directly connected through a specific choice of initial states, namely, maximally localized states (ML-states). We show numerically that in the noninteracting case the average echo is found to be monotonically increasing with increasing disorder; these results are in agreement with an analytical evaluation in the single particle case in which the echo is found to be inversely proportional to the localization length. We also show that for interacting systems, the length scale under which equilibration may occur is upper bounded and such bound is smaller the greater the average echo of ML-states. When disorder and interactions, both being localization mechanisms, are simultaneously at play the echo features a non-monotonic behaviour indicating a non-trivial interplay of the two processes. This interplay induces delocalization of the dynamics which is accompanied by delocalization in real-space. This non-monotonic behaviour is also present in the effective integrability which we show by evaluating the gap statistics.

  16. Changes in ocean circulation and carbon storage are decoupled from air-sea CO2 fluxes

    Directory of Open Access Journals (Sweden)

    A. Gnanadesikan

    2011-02-01

    Full Text Available The spatial distribution of the air-sea flux of carbon dioxide is a poor indicator of the underlying ocean circulation and of ocean carbon storage. The weak dependence on circulation arises because mixing-driven changes in solubility-driven and biologically-driven air-sea fluxes largely cancel out. This cancellation occurs because mixing driven increases in the poleward residual mean circulation result in more transport of both remineralized nutrients and heat from low to high latitudes. By contrast, increasing vertical mixing decreases the storage associated with both the biological and solubility pumps, as it decreases remineralized carbon storage in the deep ocean and warms the ocean as a whole.

  17. Biopolymers form a gelatinous microlayer at the air-sea interface when Arctic sea ice melts.

    Science.gov (United States)

    Galgani, Luisa; Piontek, Judith; Engel, Anja

    2016-07-20

    The interface layer between ocean and atmosphere is only a couple of micrometers thick but plays a critical role in climate relevant processes, including the air-sea exchange of gas and heat and the emission of primary organic aerosols (POA). Recent findings suggest that low-level cloud formation above the Arctic Ocean may be linked to organic polymers produced by marine microorganisms. Sea ice harbors high amounts of polymeric substances that are produced by cells growing within the sea-ice brine. Here, we report from a research cruise to the central Arctic Ocean in 2012. Our study shows that microbial polymers accumulate at the air-sea interface when the sea ice melts. Proteinaceous compounds represented the major fraction of polymers supporting the formation of a gelatinous interface microlayer and providing a hitherto unrecognized potential source of marine POA. Our study indicates a novel link between sea ice-ocean and atmosphere that may be sensitive to climate change.

  18. Modeling the air-sea feedback system of Madeira Island

    Science.gov (United States)

    Pullen, Julie; Caldeira, Rui; Doyle, James D.; May, Paul; Tomé, Ricardo

    2017-07-01

    A realistic nested data-assimilating two-way coupled ocean/atmosphere modeling study (highest resolution 2 km) of Madeira Island was conducted for June 2011, when conditions were favorable for atmospheric vortex shedding. The simulation's island lee region exhibited relatively cloud-free conditions, promoting warmer ocean temperatures (˜2°C higher than adjacent waters). The model reasonably reproduced measured fields at 14 meteorological stations, and matched the dimensions and magnitude of the warm sea surface temperature (SST) wake imaged by satellite. The warm SSTs in the wake are shown to imprint onto the atmospheric boundary layer (ABL) over several diurnal cycles by modulating the ABL depth up to ˜200-500 m. The erosion and dissipation of the warm ocean wake overnight was aided by atmospheric drainage flow and offshore advection of cold air (ΔT = 2°C) that produced strong upward heat fluxes (˜50 W/m2 sensible and ˜250 W/m2 latent) on an episodic basis. Nevertheless, the warm wake was never entirely eroded at night due to the cumulative effect of the diurnal cycle. The spatial pattern of the diurnal warming varied day-to-day in location and extent. Significant mutual interaction of the oceanic and atmospheric boundary layers was diagnosed via fluxes and temperature cross sections and reinforced by sensitivity runs. The simulation produces for the first time the interactive nature of the ocean and atmosphere boundary layers in the warm wake region of an island with complex terrain.

  19. Spume Drops: Their Potential Role in Air-Sea Gas Exchange

    Science.gov (United States)

    Monahan, Edward C.; Staniec, Allison; Vlahos, Penny

    2017-12-01

    After summarizing the time scales defining the change of the physical properties of spume and other droplets cast up from the sea surface, the time scales governing drop-atmosphere gas exchange are compared. Following a broad review of the spume drop production functions described in the literature, a subset of these functions is selected via objective criteria, to represent typical, upper bound, and lower bound production functions. Three complementary mechanisms driving spume-atmosphere gas exchange are described, and one is then used to estimate the relative importance, over a broad range of wind speeds, of this spume drop mechanism compared to the conventional, diffusional, sea surface mechanism in air-sea gas exchange. While remaining uncertainties in the wind dependence of the spume drop production flux, and in the immediate sea surface gas flux, preclude a definitive conclusion, the findings of this study strongly suggest that, at high wind speeds (>20 m s-1 for dimethyl sulfide and >30 m s-1 for gases such a carbon dioxide), spume drops do make a significant contribution to air-sea gas exchange.Plain Language SummaryThis paper evaluates the existing spume drop generation functions available to date and selects a reasonable upper, lower and mid range function that are reasonable for use in air sea exchange models. Based on these the contribution of spume drops to overall air sea gas exchange at different wind speeds is then evaluated to determine the % contribution of spume. Generally below 20ms-1 spume drops contribute <1% of gas exchange but may account for a significant amount of gas exchange at higher wind speeds.

  20. Biopolymers form a gelatinous microlayer at the air-sea interface when Arctic sea ice melts

    OpenAIRE

    Galgani, Luisa; Piontek, Judith; Engel, Anja

    2016-01-01

    The interface layer between ocean and atmosphere is only a couple of micrometers thick but plays a critical role in climate relevant processes, including the air-sea exchange of gas and heat and the emission of primary organic aerosols (POA). Recent findings suggest that low-level cloud formation above the Arctic Ocean may be linked to organic polymers produced by marine microorganisms. Sea ice harbors high amounts of polymeric substances that are produced by cells growing within the sea-ice ...

  1. Global changes and the air-sea exchange of chemicals. Reports and studies. No. 48

    Energy Technology Data Exchange (ETDEWEB)

    GESAMP-IMO/FAO/UNESCO/WMO/WHO/IAEA/UN/UNEP Joint Group of Experts on the Scientific Aspects of Marine Pollution

    1992-12-31

    Present and future changes to global environment have implications for marine pollution and for air-sea exchange of both anthropogenic and natural substances. This report addresses 3 issues related to potential impact of global change on air-sea exchange of chemicals: Global change and air-sea transfer of nutrients nitrogen and iron. Global change and air-sea exchange of gases. Oceanic responses to radiative and oxidative changes in atmosphere. Deposition of atmospheric anthropogenic nitrogen has probably increased bio- productivity in coastal regions along continental margins. Atmospheric deposition of new nitrogen may also have increased productivity somewhat in mid-ocean regions. Projected future increases of N oxide emissions from Asia, Africa and South America will increase the rate of deposition of oxidized nitrogen to central North Pacific, equatorial Atlantic, and equatorial and central South Indian Oceans. Atmospheric iron may be an important nutrient in certain open regions. Future changes will likely occur from changed aridity and wind speed as a result of climate change. The most important future effects on surface ocean p{sub CO2} will likely be caused by changes in ocean circulation. The pH of ocean would decrease by {approx}0.3 units for a doubling of p{sub CO2}, reducing the capacity of the ocean to take up CO{sub 2}. There is evidence that dimethyl sulfide from ocean is a source of cloud condensation nuclei and thus a factor controlling cloud albedo. By 2060 in the southern hemisphere reduction in total column stratospheric ozone from recent levels could reach 2 to 5% in the tropics, 10% at mid latitudes, and over 20% at 60 deg C. S. Increases in ground-level effective UV-B radiation could also reach 5%, 26% and 66%, at low, mid, and high latitudes in southern hemisphere. Changes in photochemical processes in the surface waters of the ocean could also happen.

  2. Atmospheric deposition and air-sea gas exchange fluxes of DDT and HCH in the Yangtze River Estuary, East China Sea

    Science.gov (United States)

    Li, Zhongxia; Lin, Tian; Li, Yuanyuan; Jiang, Yuqing; Guo, Zhigang

    2017-07-01

    The Yangtze River Estuary (YRE) is strongly influenced by the Yangtze River and lies on the pathway of the East Asian Monsoon. This study examined atmospheric deposition and air-sea gas exchange fluxes of dichlorodiphenyltrichloroethane (DDT) and hexachlorocyclohexane (HCH) to determine whether the YRE is a sink or source of selected pesticides at the air-water interface under the influences of river input and atmospheric transport. The air-sea gas exchange of DDT was characterized by net volatilization with a marked difference in its fluxes between summer (140 ng/m2/d) and the other three seasons (12 ng/m2/d), possibly due to the high surface seawater temperatures and larger riverine input in summer. However, there was no obvious seasonal variation in the atmospheric HCH deposition, and the air-sea gas exchange reached equilibrium because of low HCH levels in the air and seawater after the long-term banning of HCH and the degradation. The gas exchange flux of HCH was comparable to the dry and wet deposition fluxes at the air-water interface. This suggests that the influences from the Yangtze River input and East Asian continental outflow on the fate of HCH in the YRE were limited. The gas exchange flux of DDT was about fivefold higher than the total dry and wet deposition fluxes. DDT residues in agricultural soil transported by enhanced riverine runoff were responsible for sustaining such a high net volatilization in summer. Moreover, our results indicated that there were fresh sources of DDT from the local environment to sustain net volatilization throughout the year.

  3. Changes in ocean circulation and carbon storage are decoupled from air-sea CO2 fluxes

    OpenAIRE

    A. Gnanadesikan; I. Marinov

    2010-01-01

    The spatial distribution of the air-sea flux of carbon dioxide is a poor indicator of the underlying ocean circulation and of ocean carbon storage. The weak dependence on circulation arises because mixing-driven changes in solubility-driven and biologically-driven air-sea fluxes largely cancel out. This cancellation occurs because mixing driven increases in the poleward residual mean circulation results in more transport of both remineralized nutrients and heat from low to high latitudes. By ...

  4. Analytical local electron-electron interaction model potentials for atoms

    International Nuclear Information System (INIS)

    Neugebauer, Johannes; Reiher, Markus; Hinze, Juergen

    2002-01-01

    Analytical local potentials for modeling the electron-electron interaction in an atom reduce significantly the computational effort in electronic structure calculations. The development of such potentials has a long history, but some promising ideas have not yet been taken into account for further improvements. We determine a local electron-electron interaction potential akin to those suggested by Green et al. [Phys. Rev. 184, 1 (1969)], which are widely used in atom-ion scattering calculations, electron-capture processes, and electronic structure calculations. Generalized Yukawa-type model potentials are introduced. This leads, however, to shell-dependent local potentials, because the origin behavior of such potentials is different for different shells as has been explicated analytically [J. Neugebauer, M. Reiher, and J. Hinze, Phys. Rev. A 65, 032518 (2002)]. It is found that the parameters that characterize these local potentials can be interpolated and extrapolated reliably for different nuclear charges and different numbers of electrons. The analytical behavior of the corresponding localized Hartree-Fock potentials at the origin and at long distances is utilized in order to reduce the number of fit parameters. It turns out that the shell-dependent form of Green's potential, which we also derive, yields results of comparable accuracy using only one shell-dependent parameter

  5. Self-interaction corrected local spin density calculations of actinides

    DEFF Research Database (Denmark)

    Petit, Leon; Svane, Axel; Szotek, Z

    2010-01-01

    We use the self-interaction corrected local spin-density approximation in order to describe localization-delocalization phenomena in the strongly correlated actinide materials. Based on total energy considerations, the methodology enables us to predict the ground-state valency configuration...... of the actinide ions in these compounds from first principles. Here we review a number of applications, ranging from electronic structure calculations of actinide metals, nitrides and carbides to the behaviour under pressure of intermetallics, and O vacancies in PuO2....

  6. More about the comparison of local and non-local NN interaction models

    International Nuclear Information System (INIS)

    Amghar, A.; Desplanques, B.

    2003-01-01

    The effect of non-locality in the NN interaction with an off-energy shell character has been studied in the past in relation with the possibility that some models could be approximately phase-shifts equivalent. This work is extended to a non-locality implying terms that involve an anticommutator with the operator p 2 . It includes both scalar and tensor components. The most recent 'high accuracy' models are considered in the analysis. After studying the deuteron wave functions, electromagnetic properties of various models are compared with the idea that these ones differ by their non-locality but are equivalent up to a unitary transformation. It is found that the extra non-local tensor interaction considered in this work tends to re-enforce the role of the term considered in previous works, allowing one to explain almost completely the difference in the deuteron D-state probabilities evidenced by the comparison of the Bonn-QB and Paris models for instance. Conclusions for the effect of the non-local scalar interaction are not so clear. In many cases, it was found that these terms could explain part of the differences that the comparison of predictions for various models evidences but cases where they could not were also found. Some of these last ones have been analyzed in order to pointing out the origin of the failure

  7. Prediction of localization and interactions of apoptotic proteins

    Directory of Open Access Journals (Sweden)

    Matula Pavel

    2009-07-01

    Full Text Available Abstract During apoptosis several mitochondrial proteins are released. Some of them participate in caspase-independent nuclear DNA degradation, especially apoptosis-inducing factor (AIF and endonuclease G (endoG. Another interesting protein, which was expected to act similarly as AIF due to the high sequence homology with AIF is AIF-homologous mitochondrion-associated inducer of death (AMID. We studied the structure, cellular localization, and interactions of several proteins in silico and also in cells using fluorescent microscopy. We found the AMID protein to be cytoplasmic, most probably incorporated into the cytoplasmic side of the lipid membranes. Bioinformatic predictions were conducted to analyze the interactions of the studied proteins with each other and with other possible partners. We conducted molecular modeling of proteins with unknown 3D structures. These models were then refined by MolProbity server and employed in molecular docking simulations of interactions. Our results show data acquired using a combination of modern in silico methods and image analysis to understand the localization, interactions and functions of proteins AMID, AIF, endonuclease G, and other apoptosis-related proteins.

  8. Does air-sea coupling influence model projections of the effects of the Paris Agreement?

    Science.gov (United States)

    Klingaman, Nicholas; Suckling, Emma; Sutton, Rowan; Dong, Buwen

    2017-04-01

    The 2015 Paris Agreement includes the long-term goal to hold global-mean temperature to "well below 2°C above pre-industrial levels", with the further stated aim of limiting the global-mean warming to 1.5°C, in the belief that this would "significantly reduce the risks and impacts of climate change". However, it is not clear which risks and impacts would be avoided, or reduced, by achieving a 1.5°C warming instead of a 2.0°C warming. Initial efforts to quantify changes in risk have focused on analysis of existing CMIP5 simulations at levels of global-mean warming close to 1.5°C or 2.0°C, by taking averages over ≈20 year periods. This framework suffers from several drawbacks, however, including the effect of model internal multi-decadal variability, the influence of coupled-model systematic errors on regional circulation patterns, and the presence of a warming trend across the averaging period (i.e., the model is not in steady state). To address these issues, the "Half a degree Additional warming, Prognosis and Projected Impacts" (HAPPI) project is performing large ensembles of atmosphere-only experiments with prescribed sea-surface temperatures (SSTs) for present-day and 1.5°C and 2.0°C scenarios. While these experiments reduce the complications from a limited dataset and coupled-model systematic errors, the use of atmosphere-only models neglects feedbacks between the atmosphere and ocean, which may have substantial effects on the representation of local and regional extremes, and hence on the response of these extremes to global-mean warming. We introduce a set of atmosphere-ocean coupled simulations that incorporate much of the HAPPI experiment design, yet retain a representation of air-sea feedbacks. We use the Met Office Unified Model Global Ocean Mixed Layer (MetUM-GOML) model, which comprises the MetUM atmospheric model coupled to many columns of the one-dimensional K Profile Parameterization mixed-layer ocean. Critically, the MetUM-GOML ocean mean

  9. Fluxes and exchange rates of radon and oxygen across an air-sea interface

    International Nuclear Information System (INIS)

    Duenas, C.; Fernandez, M.C.; La Torre, M. de

    1986-01-01

    The flux of 222 Rn and O 2 from shallow water off the Bay of Malaga has been measured. The mean value of flux of 222 Rn is evaluated to be 74 atoms/m 2 · s. The Bay is a weak source of oxygen to the atmosphere, where the net production of oxygen is found to be 1.82 mol/m 2 · y. Moreover, the gas exchange rates of 222 Rn and O 2 across the air-sea interface has been determined by the radon method. The gas exchange rates and the wind speed have been estimated. (author)

  10. Air-sea exchanges of materials in the Indian Ocean: Concerns and strategies

    Digital Repository Service at National Institute of Oceanography (India)

    DileepKumar, M.

    biological production is entirely due to leakage of agricultural effluents into coastal waters, as the present knowledge on the seasonal variability of nutrients and biological production in waters along the Indian coast is still limited. If this theory... to gaseous CO2 with minor reduction in pH. The gaseous CO2 in seawater determines the extent of air-sea exchange. But small changes in temperature or pH can modify gaseous CO2 content in seawater. Thus shifts in physico- chemical and biological regimes...

  11. Emergence of global preferential attachment from local interaction

    International Nuclear Information System (INIS)

    Li Menghui; Fan Ying; Wu Jinshan; Di Zengru; Gao Liang

    2010-01-01

    Global degree/strength-based preferential attachment is widely used as an evolution mechanism of networks. But it is hard to believe that any individual can get global information and shape the network architecture based on it. In this paper, it is found that the global preferential attachment emerges from the local interaction models, including the distance-dependent preferential attachment (DDPA) evolving model of weighted networks (Li et al 2006 New J. Phys. 8 72), the acquaintance network model (Davidsen et al 2002 Phys. Rev. Lett. 88 128701) and the connecting nearest-neighbor (CNN) model (Vazquez 2003 Phys. Rev. E 67 056104). For the DDPA model and the CNN model, the attachment rate depends linearly on the degree or vertex strength, whereas for the acquaintance network model, the dependence follows a sublinear power law. It implies that for the evolution of social networks, local contact could be more fundamental than the presumed global preferential attachment.

  12. Coulomb interactions via local dynamics: a molecular-dynamics algorithm

    International Nuclear Information System (INIS)

    Pasichnyk, Igor; Duenweg, Burkhard

    2004-01-01

    We derive and describe in detail a recently proposed method for obtaining Coulomb interactions as the potential of mean force between charges which are dynamically coupled to a local electromagnetic field. We focus on the molecular dynamics version of the method and show that it is intimately related to the Car-Parrinello approach, while being equivalent to solving Maxwell's equations with a freely adjustable speed of light. Unphysical self-energies arise as a result of the lattice interpolation of charges, and are corrected by a subtraction scheme based on the exact lattice Green function. The method can be straightforwardly parallelized using standard domain decomposition. Some preliminary benchmark results are presented

  13. Can the hadron effective interaction be local in inclusive process

    International Nuclear Information System (INIS)

    Logunov, A.A.; Mestvirishvily, M.A.; Petrov, V.A.

    1974-01-01

    The behaviour of the inclusive spectrum fsub(ab→c) in the asymptotic region is discussed. On the basis of the Jost-Lehmann-Dyson representation it is shown that inclusive processes are described by some structure functions, depending only on ν, q 2 (ν=2psub(b)(psub(a)-psub(c)); q 2 =(psub(a)-psub(c)) 2 ) under certain restrictions on the J-L-D spectral functions. As these dynamical characteristics (structure functions) do not depend on the sum(psub(a)+psub(c)), the effective interaction of hadrons ''a'' and ''c'' is as if local

  14. Local condensate depletion at trap center under strong interactions

    Science.gov (United States)

    Yukalov, V. I.; Yukalova, E. P.

    2018-04-01

    Cold trapped Bose-condensed atoms, interacting via hard-sphere repulsive potentials are considered. Simple mean-field approximations show that the condensate distribution inside a harmonic trap always has the shape of a hump with the maximum condensate density occurring at the trap center. However, Monte Carlo simulations at high density and strong interactions display the condensate depletion at the trap center. The explanation of this effect of local condensate depletion at trap center is suggested in the frame of self-consistent theory of Bose-condensed systems. The depletion is shown to be due to the existence of the anomalous average that takes into account pair correlations and appears in systems with broken gauge symmetry.

  15. Photometric observations of local rocket-atmosphere interactions

    Science.gov (United States)

    Greer, R. G. H.; Murtagh, D. P.; Witt, G.; Stegman, J.

    1983-06-01

    Photometric measurements from rocket flights which recorded a strong foreign luminance in the altitude region between 90 and 130 km are reported. From one Nike-Orion rocket the luminance appeared on both up-leg and down-leg; from a series of Petrel rockets the luminance was apparent only on the down-leg. The data suggest that the luminance may be distributed mainly in the wake region along the rocket trajectory. The luminance is believed to be due to a local interaction between the rocket and the atmosphere although the precise nature of the interaction is unknown. It was measured at wavelengths ranging from 275 nm to 1.61 microns and may be caused by a combination of reactions.

  16. Localized-overlap approach to calculations of intermolecular interactions

    Science.gov (United States)

    Rob, Fazle

    Symmetry-adapted perturbation theory (SAPT) based on the density functional theory (DFT) description of the monomers [SAPT(DFT)] is one of the most robust tools for computing intermolecular interaction energies. Currently, one can use the SAPT(DFT) method to calculate interaction energies of dimers consisting of about a hundred atoms. To remove the methodological and technical limits and extend the size of the systems that can be calculated with the method, a novel approach has been proposed that redefines the electron densities and polarizabilities in a localized way. In the new method, accurate but computationally expensive quantum-chemical calculations are only applied for the regions where it is necessary and for other regions, where overlap effects of the wave functions are negligible, inexpensive asymptotic techniques are used. Unlike other hybrid methods, this new approach is mathematically rigorous. The main benefit of this method is that with the increasing size of the system the calculation scales linearly and, therefore, this approach will be denoted as local-overlap SAPT(DFT) or LSAPT(DFT). As a byproduct of developing LSAPT(DFT), some important problems concerning distributed molecular response, in particular, the unphysical charge-flow terms were eliminated. Additionally, to illustrate the capabilities of SAPT(DFT), a potential energy function has been developed for an energetic molecular crystal of 1,1-diamino-2,2-dinitroethylene (FOX-7), where an excellent agreement with the experimental data has been found.

  17. Attractive electron-electron interactions within robust local fitting approximations.

    Science.gov (United States)

    Merlot, Patrick; Kjærgaard, Thomas; Helgaker, Trygve; Lindh, Roland; Aquilante, Francesco; Reine, Simen; Pedersen, Thomas Bondo

    2013-06-30

    An analysis of Dunlap's robust fitting approach reveals that the resulting two-electron integral matrix is not manifestly positive semidefinite when local fitting domains or non-Coulomb fitting metrics are used. We present a highly local approximate method for evaluating four-center two-electron integrals based on the resolution-of-the-identity (RI) approximation and apply it to the construction of the Coulomb and exchange contributions to the Fock matrix. In this pair-atomic resolution-of-the-identity (PARI) approach, atomic-orbital (AO) products are expanded in auxiliary functions centered on the two atoms associated with each product. Numerical tests indicate that in 1% or less of all Hartree-Fock and Kohn-Sham calculations, the indefinite integral matrix causes nonconvergence in the self-consistent-field iterations. In these cases, the two-electron contribution to the total energy becomes negative, meaning that the electronic interaction is effectively attractive, and the total energy is dramatically lower than that obtained with exact integrals. In the vast majority of our test cases, however, the indefiniteness does not interfere with convergence. The total energy accuracy is comparable to that of the standard Coulomb-metric RI method. The speed-up compared with conventional algorithms is similar to the RI method for Coulomb contributions; exchange contributions are accelerated by a factor of up to eight with a triple-zeta quality basis set. A positive semidefinite integral matrix is recovered within PARI by introducing local auxiliary basis functions spanning the full AO product space, as may be achieved by using Cholesky-decomposition techniques. Local completion, however, slows down the algorithm to a level comparable with or below conventional calculations. Copyright © 2013 Wiley Periodicals, Inc.

  18. Eddy-Kuroshio Interactions: Local and Remote Effects

    Science.gov (United States)

    Jan, Sen; Mensah, Vigan; Andres, Magdalena; Chang, Ming-Huei; Yang, Yiing Jang

    2017-12-01

    western North Pacific, is important in redistributing ocean energy and, in turn, shaping the large scale ocean circulation. This study focuses on the processes underlying the interaction of nonlinear mesoscale eddies with the Kuroshio, which have not yet been thoroughly investigated in the literature. Using pressure-sensor equipped echo sounder and satellite observations interpreted in the context of semi-idealized numerical simulations, this study find (1) locally, eddy arrivals modify velocity structure in the Kuroshio first, followed by changes in sea level and isopycnal depths leading to seesaw-like variations of the sea level and density slopes across the Kuroshio, and (2) modeled remote effects, i.e., Kuroshio intrusions, manifest in the Luzon Strait and on the East China Sea shelf and depend on the eddies' impingement latitude, strength, and polarity.

  19. Air-sea interaction over the Indian Ocean due to variations in the Indonesian throughflow

    Science.gov (United States)

    Wajsowicz, R. C.

    The effects of the Indonesian throughflow on the upper thermocline circulation and surface heat flux over the Indian Ocean are presented for a 3-D ocean model forced by two different monthly wind-stress climatologies, as they show interesting differences, which could have implications for long-term variability in the Indian and Australasian monsoons. The effects are determined by contrasting a control run with a run in which the throughflow is blocked by an artificial land-bridge across the exit channels into the Indian Ocean. In the model forced by ECMWF wind stresses, there is little impact on the annual mean surface heat flux in the region surrounding the throughflow exit straits, whereas in the model forced by SSM/I-based wind stresses, a modest throughflow of less than 5 ×106 m3s-1 over the upper 300 m induces an extra 10-50 Wm-2 output. In the SSM/I-forced model, there is insignificant penetration of the throughflow into the northern Indian Ocean. However, in the ECMWF-forced model, the throughflow induces a 5-10 Wm-2 reduction in heat input into the ocean, i.e., an effective output, over the Somali Current in the annual mean. These differences are attributed to differences in the strength and direction of the Ekman transport of the ambient flow, and the vertical structure of the transport and temperature anomalies associated with the throughflow. In both models, the throughflow induces a 5-30 Wm-2 increase in net output over a broad swathe of the southern Indian Ocean, and a reduction in heat output of 10-60 Wm-2 in a large L-shaped band around Tasmania. Effective increases in throughflow-induced net output reach up to 40 (60) Wm-2 over the Agulhas Current retroflection in the ECMWF (SSM/I)-forced model. Seasonal variations in the throughflow's effect on the net surface heat flux are attributed to seasonal variations in the ambient circulation of the Indian Ocean, specifically in coastal upwelling along the south Javan, west Australian, and Somalian coasts, and in the depth of convective overturning between 40°S to 50°S, and its sensing of the mean throughflow's thermal anomaly. The seasonal anomalies plus annual mean yield maximum values for the throughflow-induced net surface heat output in boreal summer. Values may exceed 40 Wm-2 in the southern Indian Ocean interior in both models, exceed 60 Wm-2 over the Agulhas retroflection and immediate vicinity of the exit channels in the SSM/I-forced model, and reach 30 Wm-2 over the Somali jet in the ECMWF-forced model.

  20. Regional Responses to Black Carbon Aerosols: The Importance of Air-Sea Interaction

    Science.gov (United States)

    Gnanadesikan, A.; Scott, A. A.; Pradal, M.-A.; Seviour, W. J. M.; Waugh, D. W.

    2017-12-01

    The impact of modern black carbon aerosols on climate via their changes in radiative balance is studied using a coupled model where sea surface temperatures (SSTs) are allowed to vary and an atmosphere-only version of the same model where SSTs are held fixed. Allowing the ocean to respond is shown to have a profound impact on the pattern of temperature change. Particularly, large impacts are found in the North Pacific (which cools by up to 1 K in the coupled model) and in north central Asia (which warms in the coupled simulation and cools in the fixed SST simulation). Neither set of experiments shows large changes in surface temperatures in the Southeast Asian region where the atmospheric burden of black carbon is highest. These results are related to the stabilization of the atmosphere and changes in oceanic heat transport. Over the North Pacific, atmospheric stabilization results in an increase in stratiform clouds. The resulting shading reduces evaporation, freshening the surface layer of the ocean and reducing the inflow of warm subtropical waters. Over the land, a delicate balance between greater atmospheric absorption, shading of the surface and changes in latent cooling of the surface helps to determine whether warming or cooling is seen. Our results emphasize the importance of coupling in determining the response of the climate system to black carbon and suggest that black carbon may play an important role in modulating climate change over the North Pacific.

  1. Air-sea interaction over the tropical Indian Ocean during several contrasting monsoon seasons

    Digital Repository Service at National Institute of Oceanography (India)

    RameshKumar, M.R.; Sastry, J.S.

    stream_size 12 stream_content_type text/plain stream_name Proc_Indian_Acad_Sci_(EPS)_99_393.pdf.txt stream_source_info Proc_Indian_Acad_Sci_(EPS)_99_393.pdf.txt Content-Encoding ISO-8859-1 Content-Type text/plain; charset=ISO-8859-1 ...

  2. Effects of the surface waves on air-sea interactions of the sea spray

    NARCIS (Netherlands)

    Francius, M.J.; Eijk, A.M.J. van

    2006-01-01

    Aerosols are important to a large number of processes in the marine boundary layer. On a micro-meteorological scale, they influence the heat and moisture budgets near the sea surface. Since the ocean acts both as a source and a sink for aerosols, the sea spray droplets may transfer water vapour and

  3. Experimental sea slicks: Their practical applications and utilization for basic studies of air-sea interactions

    Science.gov (United States)

    Hühnerfuss, Heinrich; Garrett, W. D.

    1981-01-01

    Practical applications of organic surface films added to the sea surface date back to ancient times. Aristotle, Plutarch, and Pliny the Elder describe the seaman's practice of calming waves in a storm by pouring oil onto the sea [Scott, 1977]. It was also noted that divers released oil beneath the water surface so that it could rise and spread over the sea surface, thereby suppressing the irritating flicker associated with the passage of light through a rippled surface. From a scientific point of view, Benjamin Franklin was the first to perform experiments with oils on natural waters. His experiment with a `teaspoonful of oil' on Clapham pond in 1773 inspired many investigators to consider sea surface phenomena or to conduct experiments with oil films. This early research has been reviewed by Giles [1969], Giles and Forrester [1970], and Scott [1977]. Franklin's studies with experimental slicks can be regarded as the beginning of surface film chemistry. His speculations on the wave damping influence of oil induced him to perform the first qualitative experiment with artificial sea slicks at Portsmouth (England) in October of 1773. Although the sea was calmed and very few white caps appeared in the oil-covered area, the swell continued through the oiled area to Franklin's great disappointment.

  4. Air Sea Interaction Over the Indian Ocean During the Contrasting Monsoon Years 2002 and 2003

    Digital Repository Service at National Institute of Oceanography (India)

    RameshKumar, M.R.; Sankar, S.; Fennig, K.; Pai, S.; Schulz, J.

    dataset ? HOAPS II (http://www.hoaps.zmaw.de). More details can be had from Jost et al., [2002], Grassl et al., [2000]. The specific humidity and zonal wind were obtained from NCEP/NCAR Reanalysis [Kalnay et al., 1996] website ftp://ftp.cdc... in Environmental Sciences) Climate Diagnostics Center, Boulder, Colorado, from their website http://www.cdc.noaa.gov [Gruber and Krueger, 1984]. 3. Results [7] Krishnan et al. [2003] have studied the influence of positive SST anomalies over...

  5. Mesoscale air-sea interactions related to tropical and extratropical storms in the Gulf of Mexico

    Science.gov (United States)

    Lewis, James K.; Hsu, S. A.

    1992-01-01

    Observations of the lower atmosphere of the northwestern Gulf of Mexico from November 1982 to mid-February 1983 were studied in which seven significant cyclones were generated in the northwestern gulf. It was found that all seven storms occurred when the vorticity correlate of the horizontal air temperature difference was about 3-5 C above the climatological mean difference. It is shown that a maximum in the frequency of tropical storms within the Gulf of Mexico exists some 275 km south of the Mississippi delta at 27 deg N, 90 deg W. This maximum is a result of only those storms which originate within the gulf. Two plausible effects of the Loop Current and its rings on tropical storms are discussed. One is that these ocean features are large and consolidated heat and moisture sources from which a nearby slowly moving atmospheric disturbance can extract energy. The second is that of the cyclonic vorticity that can be generated in the lower atmosphere by such oceanographic features.

  6. Gas exchange at the air-sea interface: a technique for radon measurements in seawater

    International Nuclear Information System (INIS)

    Queirazza, G.; Roveri, M.

    1991-01-01

    The rate of exchange of various gas species, such as O 2 , CO 2 etc. across the air-water interface can be evaluated from the 222 Rn vertical profiles in the water column. Radon profiles were measured in 4 stations in the NW Adriatic Sea, in September 1990, using solvent extraction and liquid scintillation counting techniques, directly on board the ship. The radiochemical procedure is described in detail. The lower limit of detection is approximately 0.4 mBq 1 -1 . The radon deficiency in the profiles gives estimates of the gas transfer rate across the air-sea interface ranging from 0.9 to 7.0 m d -1 . The suitability of the radon deficiency method in shallow water, enclosed seas is briefly discussed. (Author)

  7. Effects of air-sea coupling over the North Sea and the Baltic Sea on simulated summer precipitation over Central Europe

    Science.gov (United States)

    Ho-Hagemann, Ha Thi Minh; Gröger, Matthias; Rockel, Burkhardt; Zahn, Matthias; Geyer, Beate; Meier, H. E. Markus

    2017-12-01

    . However, the COSTRICE simulations are generally more accurate than the atmosphere-only CCLM simulations if extreme precipitation is considered, particularly under Northerly Circulation conditions, in which the airflow from the North Atlantic Ocean passes the North Sea in the coupling domain. The air-sea feedback (e.g., wind, evaporation and sea surface temperature) and land-sea interactions are better reproduced with the COSTRICE model system than the atmosphere-only CCLM and lead to an improved simulation of large-scale moisture convergence from the sea to land and, consequently, increased heavy precipitation over Central Europe.

  8. Oxygen in the Southern Ocean From Argo Floats: Determination of Processes Driving Air-Sea Fluxes

    Science.gov (United States)

    Bushinsky, Seth M.; Gray, Alison R.; Johnson, Kenneth S.; Sarmiento, Jorge L.

    2017-11-01

    The Southern Ocean is of outsized significance to the global oxygen and carbon cycles with relatively poor measurement coverage due to harsh winters and seasonal ice cover. In this study, we use recent advances in the parameterization of air-sea oxygen fluxes to analyze 9 years of oxygen data from a recalibrated Argo oxygen data set and from air-calibrated oxygen floats deployed as part of the Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) project. From this combined data set of 150 floats, we find a total Southern Ocean oxygen sink of -183 ± 80 Tmol yr-1 (positive to the atmosphere), greater than prior estimates. The uptake occurs primarily in the Polar-Frontal Antarctic Zone (PAZ, -94 ± 30 Tmol O2 yr-1) and Seasonal Ice Zone (SIZ, -111 ± 9.3 Tmol O2 yr-1). This flux is driven by wintertime ventilation, with a large portion of the flux in the SIZ passing through regions with fractional sea ice. The Subtropical Zone (STZ) is seasonally driven by thermal fluxes and exhibits a net outgassing of 47 ± 29 Tmol O2 yr-1 that is likely driven by biological production. The Subantarctic Zone (SAZ) uptake is -25 ± 12 Tmol O2 yr-1. Total oxygen fluxes were separated into a thermal and nonthermal component. The nonthermal flux is correlated with net primary production and mixed layer depth in the STZ, SAZ, and PAZ, but not in the SIZ where seasonal sea ice slows the air-sea gas flux response to the entrainment of deep, low-oxygen waters.

  9. Wintertime Air-Sea Gas Transfer Rates and Air Injection Fluxes at Station Papa in the NE Pacific

    Science.gov (United States)

    McNeil, C.; Steiner, N.; Vagle, S.

    2008-12-01

    In recent studies of air-sea fluxes of N2 and O2 in hurricanes, McNeil and D'Asaro (2007) used a simplified model formulation of air-sea gas flux to estimate simultaneous values of gas transfer rate, KT, and air injection flux, VT. The model assumes air-sea gas fluxes at high to extreme wind speeds can be explained by a combination of two processes: 1) air injection, by complete dissolution of small bubbles drawn down into the ocean boundary layer by turbulent currents, and 2) near-surface equilibration processes, such as occurs within whitecaps. This analysis technique relies on air-sea gas flux estimates for two gases, N2 and O2, to solve for the two model parameters, KT and VT. We present preliminary results of similar analysis of time series data collected during winter storms at Station Papa in the NE Pacific during 2003/2004. The data show a clear increase in KT and VT with increasing NCEP derived wind speeds and acoustically measured bubble penetration depth.

  10. Dynamic interaction between localized magnetic moments in carbon nanotubes

    International Nuclear Information System (INIS)

    Costa, A T; Muniz, R B; Ferreira, M S

    2008-01-01

    Magnetic moments dilutely dispersed in a metallic host tend to be coupled through the conduction electrons of the metal. This indirect exchange coupling (IEC), known to occur for a variety of magnetic materials embedded in several different metallic structures, is of rather long range, especially for low-dimensional structures like carbon nanotubes. Motivated by recent claims that the indirect coupling between magnetic moments in precessional motion has a much longer range than its static counterpart, we consider here how magnetic atoms adsorbed to the walls of a metallic nanotube respond to a time-dependent perturbation that induces their magnetic moments to precess. By calculating the frequency-dependent spin susceptibility, we are able to identify resonant peaks whose respective widths provide information about the dynamic aspect of the IEC. We show that by departing from a purely static representation to another in which the moments are allowed to precess, we change from what is already considered a long-range interaction to another whose range is far superior. In other words, localized magnetic moments embedded in a metallic structure can feel each other's presence more easily when they are set in precessional motion. We argue that such an effect can have useful applications leading to large-scale spintronics devices

  11. Interaction between local hydrodynamics and algal community in epilithic biofilm.

    Science.gov (United States)

    Graba, Myriam; Sauvage, Sabine; Moulin, Frédéric Y; Urrea, Gemma; Sabater, Sergi; Sanchez-Pérez, José Miguel

    2013-05-01

    Interactions between epilithic biofilm and local hydrodynamics were investigated in an experimental flume. Epilithic biofilm from a natural river was grown over a 41-day period in three sections with different flow velocities (0.10, 0.25 and 0.40 m s(-1) noted LV, IV and HV respectively). Friction velocities u* and boundary layer parameters were inferred from PIV measurement in the three sections and related to the biofilm structure. The results show that there were no significant differences in Dry Mass and Ash-Free Dry Mass (g m(-2)) at the end of experiment, but velocity is a selective factor in algal composition and the biofilms' morphology differed according to differences in water velocity. A hierarchical agglomerative cluster analysis (Bray-Curtis distances) and an Indicator Species Analysis (IndVal) showed that the indicator taxa were Fragilaria capucina var. mesolepta in the low-velocity (u*. = 0.010-0.012 m s(-1)), Navicula atomus, Navicula capitatoradiata and Nitzschia frustulum in the intermediate-velocity (u*. = 0.023-0.030 m s(-1)) and Amphora pediculus, Cymbella proxima, Fragilaria capucina var. vaucheriae and Surirella angusta in the high-velocity (u*. = 0.033-0.050 m s(-1)) sections. A sloughing test was performed on 40-day-old biofilms in order to study the resistance of epilithic biofilms to higher hydrodynamic regimes. The results showed an inverse relationship between the proportion of detached biomass and the average value of friction velocity during growth. Therefore, water velocity during epilithic biofilm growth conditioned the structure and algal composition of biofilm, as well as its response (ability to resist) to higher shear stresses. This result should be considered in modelling epilithic biofilm dynamics in streams subject to a variable hydrodynamics regime. Copyright © 2013 Elsevier Ltd. All rights reserved.

  12. The Response of the Ocean Thermal Skin Layer to Air-Sea Surface Heat Fluxes

    Science.gov (United States)

    Wong, Elizabeth Wing-See

    There is much evidence that the ocean is heating as a result of an increase in concentrations of greenhouse gases (GHGs) in the atmosphere from human activities. GHGs absorb infrared radiation and re-emit infrared radiation back to the ocean's surface which is subsequently absorbed. However, the incoming infrared radiation is absorbed within the top micrometers of the ocean's surface which is where the thermal skin layer exists. Thus the incident infrared radiation does not directly heat the upper few meters of the ocean. We are therefore motivated to investigate the physical mechanism between the absorption of infrared radiation and its effect on heat transfer at the air-sea boundary. The hypothesis is that since heat lost through the air-sea interface is controlled by the thermal skin layer, which is directly influenced by the absorption and emission of infrared radiation, the heat flow through the thermal skin layer adjusts to maintain the surface heat loss, assuming the surface heat loss does not vary, and thus modulates the upper ocean heat content. This hypothesis is investigated through utilizing clouds to represent an increase in incoming longwave radiation and analyzing retrieved thermal skin layer vertical temperature profiles from a shipboard infrared spectrometer from two research cruises. The data are limited to night-time, no precipitation and low winds of less than 2 m/s to remove effects of solar radiation, wind-driven shear and possibilities of thermal skin layer disruption. The results show independence of the turbulent fluxes and emitted radiation on the incident radiative fluxes which rules out the immediate release of heat from the absorption of the cloud infrared irradiance back into the atmosphere through processes such as evaporation and increase infrared emission. Furthermore, independence was confirmed between the incoming and outgoing radiative flux which implies the heat sink for upward flowing heat at the air-sea interface is more

  13. Understanding Protein-Protein Interactions Using Local Structural Features

    DEFF Research Database (Denmark)

    Planas-Iglesias, Joan; Bonet, Jaume; García-García, Javier

    2013-01-01

    Protein-protein interactions (PPIs) play a relevant role among the different functions of a cell. Identifying the PPI network of a given organism (interactome) is useful to shed light on the key molecular mechanisms within a biological system. In this work, we show the role of structural features...... interacting and non-interacting protein pairs to classify the structural features that sustain the binding (or non-binding) behavior. Our study indicates that not only the interacting region but also the rest of the protein surface are important for the interaction fate. The interpretation...... to score the likelihood of the interaction between two proteins and to develop a method for the prediction of PPIs. We have tested our method on several sets with unbalanced ratios of interactions and non-interactions to simulate real conditions, obtaining accuracies higher than 25% in the most unfavorable...

  14. Local and non-local deficits in amblyopia: acuity and spatial interactions.

    Science.gov (United States)

    Bonneh, Yoram S; Sagi, Dov; Polat, Uri

    2004-12-01

    Amblyopic vision is thought to be limited by abnormal long-range spatial interactions, but their exact mode of action and relationship to the main amblyopic deficit in visual acuity is largely unknown. We studied this relationship in a group (N=59) of anisometropic (N=21) and strabismic (or combined, N=38) subjects, using (1) a single and multi-pattern (crowded) computerized static Tumbling-E test with scaled spacing of two pattern widths (TeVA), in addition to an optotype (ETDRS chart) acuity test (VA) and (2) contrast detection of Gabor patches with lateral flankers (lateral masking) along the horizontal and vertical axes as well as in collinear and parallel configurations. By correlating the different measures of visual acuity and contrast suppression, we found that (1) the VA of the strabismic subjects could be decomposed into two uncorrelated components measured in TeVA: acuity for isolated patterns and acuity reduction due to flanking patterns. The latter comprised over 60% of the VA magnitude, on the average and accounted for over 50% of its variance. In contrast, a slight reduction in acuity was found in the anisometropic subjects, and the acuity for a single pattern could account for 70% of the VA variance. (2) The lateral suppression (contrast threshold elevation) in a parallel configuration along the horizontal axis was correlated with the VA (R2=0.7), as well as with the crowding effect (TeVA elevation, R2=0.5) for the strabismic group. Some correlation with the VA was also found for the collinear configuration in the anisometropic group, but less suppression and no correlation were found for all the vertical configurations in all the groups. The results indicate the existence of a specific non-local component of the strabismic deficit, in addition to the local acuity deficit in all amblyopia types. This deficit might reflect long-range lateral inhibition, or alternatively, an inaccurate and scattered top-down attentional selection mechanism.

  15. The global climatology of an interannually varying air-sea flux data set

    Energy Technology Data Exchange (ETDEWEB)

    Large, W.G.; Yeager, S.G. [National Center for Atmospheric Research, Boulder, CO (United States)

    2009-08-15

    The air-sea fluxes of momentum, heat, freshwater and their components have been computed globally from 1948 at frequencies ranging from 6-hourly to monthly. All fluxes are computed over the 23 years from 1984 to 2006, but radiation prior to 1984 and precipitation before 1979 are given only as climatological mean annual cycles. The input data are based on NCEP reanalysis only for the near surface vector wind, temperature, specific humidity and density, and on a variety of satellite based radiation, sea surface temperature, sea-ice concentration and precipitation products. Some of these data are adjusted to agree in the mean with a variety of more reliable satellite and in situ measurements, that themselves are either too short a duration, or too regional in coverage. The major adjustments are a general increase in wind speed, decrease in humidity and reduction in tropical solar radiation. The climatological global mean air-sea heat and freshwater fluxes (1984-2006) then become 2 W/m{sup 2} and -0.1 mg/m{sup 2} per second, respectively, down from 30 W/m{sup 2} and 3.4 mg/m{sup 2} per second for the unaltered data. However, decadal means vary from 7.3 W/m{sup 2} (1977-1986) to -0.3 W/m{sup 2} (1997-2006). The spatial distributions of climatological fluxes display all the expected features. A comparison of zonally averaged wind stress components across ocean sub-basins reveals large differences between available products due both to winds and to the stress calculation. Regional comparisons of the heat and freshwater fluxes reveal an alarming range among alternatives; typically 40 W/m{sup 2} and 10 mg/m{sup 2} per second, respectively. The implied ocean heat transports are within the uncertainty of estimates from ocean observations in both the Atlantic and Indo-Pacific basins. They show about 2.4 PW of tropical heating, of which 80% is transported to the north, mostly in the Atlantic. There is similar good agreement in freshwater transport at many latitudes in both

  16. Air-sea exchange fluxes of synthetic polycyclic musks in the North Sea and the Arctic.

    Science.gov (United States)

    Xie, Zhiyong; Ebinghaus, Ralf; Temme, Christian; Heemken, Olaf; Ruck, Wolfgang

    2007-08-15

    Synthetic polycyclic musk fragrances Galaxolide (HHCB) and Tonalide (AHTN) were measured simultaneously in air and seawater in the Arctic and the North Sea and in the rural air of northern Germany. Median concentrations of gas-phase HHCB and AHTN were 4 and 18 pg m(-3) in the Arctic, 28 and 18 pg m(-3) in the North Sea, and 71 and 21 pg m(-3) in northern Germany, respectively. Various ratios of HHCB/AHTN implied that HHCB is quickly removed by atmospheric degradation, while AHTN is relatively persistent in the atmosphere. Dissolved concentrations ranged from 12 to 2030 pg L(-1) for HHCB and from below the method detection limit (3 pg L(-1)) to 965 pg L(-1) for AHTN with median values of 59 and 23 pg L(-1), respectively. The medians of volatilization fluxes for HHCB and AHTN were 27.2 and 14.2 ng m(-2) day(-1) and the depositional fluxes were 5.9 and 3.3 ng m(-2) day(-1), respectively, indicating water-to-air volatilization is a significant process to eliminate HHCB and AHTN from the North Sea. In the Arctic, deposition fluxes dominated the air-sea gas exchange of HHCB and AHTN, suggesting atmospheric input controls the levels of HHCB and AHTN in the polar region.

  17. Mississippi State University Center for Air Sea Technology FY95 Research Program

    Science.gov (United States)

    Yeske, Lanny; Corbin, James H.

    1995-01-01

    The Mississippi State University (MSU) Center for Air Sea Technology (CAST) evolved from the Institute for Naval Oceanography's (INO) Experimental Center for Mesoscale Ocean Prediction (ECMOP) which was started in 1989. MSU CAST subsequently began operation on 1 October 1992 under an Office of Naval Research (ONR) two-year grant which ended on 30 September 1994. In FY95 MSU CAST was successful in obtaining five additional research grants from ONR, as well as several other research contracts from the Naval Oceanographic Office via NASA, the Naval Research Laboratory, the Army Corps of Engineers, and private industry. In the past, MSU CAST technical research and development has produced tools, systems, techniques, and procedures that improve efficiency and overcome deficiency for both the operational and research communities residing with the Department of Defense, private industry, and university ocean modeling community. We continued this effort with the following thrust areas: to develop advanced methodologies and tools for model evaluation, validation and visualization, both oceanographic and atmospheric; to develop a system-level capability for conducting temporally and ; spatially scaled ocean simulations driven by or are responsive to ocean models, and take into consideration coupling to atmospheric models; to continue the existing oceanographic/atmospheric data management task with emphasis on distributed databases in a network environment, with database optimization and standardization, including use of Mosaic and World Wide Web (WWW) access; and to implement a high performance parallel computing technology for CAST ocean models

  18. Local tax interaction with multiple tax instruments: evidence from Flemish municipalities

    OpenAIRE

    S. VAN PARYS; B. MERLEVEDE; T. VERBEKE

    2010-01-01

    We investigate the long run result of strategic interaction among local jurisdictions using multiple tax instruments. Most studies about local policy interaction only consider a single policy instrument. With multiple tax instruments, however, tax interaction is more complex. We construct a simple theoretical framework based on a basic spillover model, with two tax rates and immobile resources. We show that the signs of within and cross tax interaction crucially depend on the extent to which ...

  19. Sea ice contribution to the air-sea CO(2) exchange in the Arctic and Southern Oceans

    DEFF Research Database (Denmark)

    Rysgaard...[], Søren; Bendtsen, Jørgen; Delille, B.

    2011-01-01

    Although salt rejection from sea ice is a key process in deep-water formation in ice-covered seas, the concurrent rejection of CO(2) and the subsequent effect on air-sea CO(2) exchange have received little attention. We review the mechanisms by which sea ice directly and indirectly controls the air......-sea CO(2) exchange and use recent measurements of inorganic carbon compounds in bulk sea ice to estimate that oceanic CO(2) uptake during the seasonal cycle of sea-ice growth and decay in ice-covered oceanic regions equals almost half of the net atmospheric CO(2) uptake in ice-free polar seas. This sea......-sea CO(2) exchange during winter, and (3) release of CO(2)-depleted melt water with excess total alkalinity during sea-ice decay and (4) biological CO(2) drawdown during primary production in sea ice and surface oceanic waters....

  20. Estimating the Local Size and Coverage of Interaction Network Regions

    Science.gov (United States)

    Eagle, Michael; Barnes, Tiffany

    2015-01-01

    Interactive problem solving environments, such as intelligent tutoring systems and educational video games, produce large amounts of transactional data which make it a challenge for both researchers and educators to understand how students work within the environment. Researchers have modeled the student-tutor interactions using complex network…

  1. The Interaction of Local Context and Cultural Background

    DEFF Research Database (Denmark)

    Nielsen, Rikke Skovgaard; Holmqvist, Emma; Dhalman, Hanna

    2015-01-01

    Immigrants' housing position is often explained by (lack of) resources or differences in cultural backgrounds. Recent studies have included the importance of local context. The aim of this paper is to examine Somalis' perceptions of their possibilities in four Nordic capitals' housing markets...... and sometimes conflict with each other, but that the negotiation between cultural background and local context was individual. The conclusion is that local context and cultural background are important factors for understanding differences between Somalis on different housing markets, thus emphasising...

  2. A Survey of Scattering, Attenuation, and Size Spectra Studies of Bubble Layers and Plumes Beneath the Air-Sea Interface.

    Science.gov (United States)

    1991-08-30

    soluble iron in the ocean [201] - a factor which may have global ecological implications since these creatures may account for a significant removal...submerged plateau) and seamount -dense environments. In these contexts the existing measurements in lakes and shallow water need follow-up work in...Studies of Bubble Layers and Plumes Beneath the Air-Sea Interface EDWARD POWELL Acoustic Svstems Branch Acoustics Division August 30, 1991 Si~ T 91-10188

  3. Air/sea DMS gas transfer in the North Atlantic: evidence for limited interfacial gas exchange at high wind speed

    Science.gov (United States)

    Bell, T. G.; De Bruyn, W.; Miller, S. D.; Ward, B.; Christensen, K.; Saltzman, E. S.

    2013-05-01

    Shipboard measurements of eddy covariance DMS air/sea fluxes and seawater concentration were carried out in the North Atlantic bloom region in June/July 2011. Gas transfer coefficients (k660) show a linear dependence on mean horizontal wind speed at wind speeds up to 11 m s-1. At higher wind speeds the relationship between k660 and wind speed weakens. At high winds, measured DMS fluxes were lower than predicted based on the linear relationship between wind speed and interfacial stress extrapolated from low to intermediate wind speeds. In contrast, the transfer coefficient for sensible heat did not exhibit this effect. The apparent suppression of air/sea gas flux at higher wind speeds appears to be related to sea state, as determined from shipboard wave measurements. These observations are consistent with the idea that long waves suppress near surface water side turbulence, and decrease interfacial gas transfer. This effect may be more easily observed for DMS than for less soluble gases, such as CO2, because the air/sea exchange of DMS is controlled by interfacial rather than bubble-mediated gas transfer under high wind speed conditions.

  4. Response of air-sea carbon fluxes and climate to orbital forcing changes in the Community Climate System Model

    Science.gov (United States)

    Jochum, M.; Peacock, S.; Moore, K.; Lindsay, K.

    2010-07-01

    A global general circulation model coupled to an ocean ecosystem model is used to quantify the response of carbon fluxes and climate to changes in orbital forcing. Compared to the present-day simulation, the simulation with the Earth's orbital parameters from 115,000 years ago features significantly cooler northern high latitudes but only moderately cooler southern high latitudes. This asymmetry is explained by a 30% reduction of the strength of the Atlantic Meridional Overturning Circulation that is caused by an increased Arctic sea ice export and a resulting freshening of the North Atlantic. The strong northern high-latitude cooling and the direct insolation induced tropical warming lead to global shifts in precipitation and winds to the order of 10%-20%. These climate shifts lead to regional differences in air-sea carbon fluxes of the same order. However, the differences in global net air-sea carbon fluxes are small, which is due to several effects, two of which stand out: first, colder sea surface temperature leads to a more effective solubility pump but also to increased sea ice concentration which blocks air-sea exchange, and second, the weakening of Southern Ocean winds that is predicted by some idealized studies occurs only in part of the basin, and is compensated by stronger winds in other parts.

  5. Sea ice contribution to the air-sea CO{sub 2} exchange in the Arctic and Southern Oceans

    Energy Technology Data Exchange (ETDEWEB)

    Rysgaard, Soeren (Greenland Climate Research Centre, Greenland Inst. of Natural Resources, Nuuk, Greenland (Denmark); Centre for Earth Observation Science, CHR Faculty of Environment Earth and Resources, Univ. of Manitoba, Winnipeg (Canada)), e-mail: rysgaard@natur.gl; Bendtsen, Joergen (Greenland Climate Research Centre, Greenland Inst. of Natural Resources, Nuuk, Greenland (Denmark); Centre for Ice and Climate, Niels Bohr Inst., Univ. of Copenhagen, Copenhagen O (Denmark)); Delille, Bruno (Unit' e d' Oceanographie Chimique, Interfacultary Centre for Marine Research, Universite de Liege, Liege (Belgium)); Dieckmann, Gerhard S. (Alfred Wegener Inst. for Polar and Marine Research, Bremerhaven (Germany)); Glud, Ronnie N. (Greenland Climate Research Centre, Greenland Inst. of Natural Resources, Nuuk, Greenland (Denmark); Scottish Association of Marine Sciences, Scotland UK, Southern Danish Univ. and NordCee, Odense M (Denmark)); Kennedy, Hilary; Papadimitriou, Stathys (School of Ocean Sciences, Bangor Univ., Menai Bridge, Anglesey, Wales (United Kingdom)); Mortensen, John (Greenland Climate Research Centre, Greenland Inst. of Natural Resources, Nuuk, Greenland (Denmark)); Thomas, David N. (School of Ocean Sciences, Bangor Univ., Menai Bridge, Anglesey, Wales (United Kingdom); Finnish Environment Inst. (SYKE), Marine Research Centre, Helsinki (Finland)); Tison, Jean-Louis (Glaciology Unit, Dept. of Earth and Environmental Sciences, Universite Libre de Bruxelles, Bruxelles, (Belgium))

    2011-11-15

    Although salt rejection from sea ice is a key process in deep-water formation in ice-covered seas, the concurrent rejection of CO{sub 2} and the subsequent effect on air-sea CO{sub 2} exchange have received little attention. We review the mechanisms by which sea ice directly and indirectly controls the air-sea CO{sub 2} exchange and use recent measurements of inorganic carbon compounds in bulk sea ice to estimate that oceanic CO{sub 2} uptake during the seasonal cycle of sea-ice growth and decay in ice-covered oceanic regions equals almost half of the net atmospheric CO{sub 2} uptake in ice-free polar seas. This sea-ice driven CO{sub 2} uptake has not been considered so far in estimates of global oceanic CO{sub 2} uptake. Net CO{sub 2} uptake in sea-ice-covered oceans can be driven by; (1) rejection during sea-ice formation and sinking of CO{sub 2}-rich brine into intermediate and abyssal oceanic water masses, (2) blocking of air-sea CO{sub 2} exchange during winter, and (3) release of CO{sub 2}-depleted melt water with excess total alkalinity during sea-ice decay and (4) biological CO{sub 2} drawdown during primary production in sea ice and surface oceanic waters

  6. Relationships Between the Bulk-Skin Sea Surface Temperature Difference, Wind, and Net Air-Sea Heat Flux

    Science.gov (United States)

    Emery, William J.; Castro, Sandra L.; Lindstrom, Eric (Technical Monitor)

    2002-01-01

    The primary purpose of this project was to evaluate and improve models for the bulk-skin temperature difference to the point where they could accurately and reliably apply under a wide variety of environmental conditions. To accomplish this goal, work was conducted in three primary areas. These included production of an archive of available data sets containing measurements of the skin and bulk temperatures and associated environmental conditions, evaluation of existing skin layer models using the compiled data archive, and additional theoretical work on the development of an improved model using the data collected under diverse environmental conditions. In this work we set the basis for a new physical model of renewal type, and propose a parameterization for the temperature difference across the cool skin of the ocean in which the effects of thermal buoyancy, wind stress, and microscale breaking are all integrated by means of the appropriate renewal time scales. Ideally, we seek to obtain a model that will accurately apply under a wide variety of environmental conditions. A summary of the work in each of these areas is included in this report. A large amount of work was accomplished under the support of this grant. The grant supported the graduate studies of Sandra Castro and the preparation of her thesis which will be completed later this year. This work led to poster presentations at the 1999 American Geophysical Union Fall Meeting and 2000 IGARSS meeting. Additional work will be presented in a talk at this year's American Meteorological Society Air-Sea Interaction Meeting this May. The grant also supported Sandra Castro during a two week experiment aboard the R/P Flip (led by Dr. Andrew Jessup of the Applied Physics Laboratory) to help obtain additional shared data sets and to provide Sandra with a fundamental understanding of the physical processes needed in the models. In a related area, the funding also partially supported Dr. William Emery and Daniel

  7. Identification of mannose interacting residues using local composition.

    Directory of Open Access Journals (Sweden)

    Sandhya Agarwal

    Full Text Available BACKGROUND: Mannose binding proteins (MBPs play a vital role in several biological functions such as defense mechanisms. These proteins bind to mannose on the surface of a wide range of pathogens and help in eliminating these pathogens from our body. Thus, it is important to identify mannose interacting residues (MIRs in order to understand mechanism of recognition of pathogens by MBPs. RESULTS: This paper describes modules developed for predicting MIRs in a protein. Support vector machine (SVM based models have been developed on 120 mannose binding protein chains, where no two chains have more than 25% sequence similarity. SVM models were developed on two types of datasets: 1 main dataset consists of 1029 mannose interacting and 1029 non-interacting residues, 2 realistic dataset consists of 1029 mannose interacting and 10320 non-interacting residues. In this study, firstly, we developed standard modules using binary and PSSM profile of patterns and got maximum MCC around 0.32. Secondly, we developed SVM modules using composition profile of patterns and achieved maximum MCC around 0.74 with accuracy 86.64% on main dataset. Thirdly, we developed a model on a realistic dataset and achieved maximum MCC of 0.62 with accuracy 93.08%. Based on this study, a standalone program and web server have been developed for predicting mannose interacting residues in proteins (http://www.imtech.res.in/raghava/premier/. CONCLUSIONS: Compositional analysis of mannose interacting and non-interacting residues shows that certain types of residues are preferred in mannose interaction. It was also observed that residues around mannose interacting residues have a preference for certain types of residues. Composition of patterns/peptide/segment has been used for predicting MIRs and achieved reasonable high accuracy. It is possible that this novel strategy may be effective to predict other types of interacting residues. This study will be useful in annotating the function

  8. Distribution and air-sea exchange of mercury (Hg) in polluted marine environments

    Science.gov (United States)

    Bagnato, E.; Sprovieri, M.; Bitetto, M.; Bonsignore, M.; Calabrese, S.; Di Stefano, V.; Oliveri, E.; Parello, F.; Mazzola, S.

    2012-04-01

    Mercury (Hg) is emitted in the atmosphere by anthropogenic and natural sources, these last accounting for one third of the total emissions. Since the pre-industrial age, the atmospheric deposition of mercury have increased notably, while ocean emissions have doubled owing to the re-emission of anthropogenic mercury. Exchange between the atmosphere and ocean plays an important role in cycling and transport of mercury. We present the preliminary results from a study on the distribution and evasion flux of mercury at the atmosphere/sea interface in the Augusta basin (SE Sicily, southern Italy), a semi-enclosed marine area affected by a high degree of contamination (heavy metals and PHA) due to the oil refineries placed inside its commercial harbor. It seems that the intense industrial activity of the past have lead to an high Hg pollution in the bottom sediments of the basin, whose concentrations are far from the background mercury value found in most of the Sicily Strait sediments. The release of mercury into the harbor seawater and its dispersion by diffusion from sediments to the surface, make the Augusta basin a potential supplier of mercury both to the Mediterranean Sea and the atmosphere. Based on these considerations, mercury concentration and flux at the air-sea interface of the Bay have been estimated using a real-time atomic adsorption spectrometer (LUMEX - RA915+) and an home-made accumulation chamber, respectively. Estimated Total Atmospheric Mercury (TGM) concentrations during the cruise on the bay were in the range of 1-3 ng · m-3, with a mean value of about 1.4 ng · m-3. These data well fit with the background Hgatm concentration values detected on the land (1-2 ng · m-3, this work), and, more in general, with the background atmospheric TGM levels found in the North Hemisphere (1.5-1.7 ng · m-3)a. Besides, our measurements are in the range of those reported for other important polluted marine areas. The mercury evasion flux at the air-sea interface

  9. Is local equilibrium a useful concept in hadronic interactions

    International Nuclear Information System (INIS)

    Carruthers, P.

    1984-01-01

    Aspects of multiparticle production phenomena are reviewed, which bear on the existence of local equilibrium in all or part of a collision event. Several universal features of purely hadronic events, such as the p/sub perpendicular/ distribution of secondaries, the independence of multiplicities and multiplicity distributions on the quantum numbers of the colliding particles are easily interpreted by postulating the existence of local thermodynamic equilibrium for the dominant nondiffractive events. Except in the case of the multiplicity distribution, other interpretations often do not exist. Equilibration mechanisms which might establish local equilibrium are examined. We point out that several mechanisms besides the usual kinetic relaxation have not been seriously studied. These include collective instabilities, turbulence and chaos, which could be more effective in establishing equilibrium. Developments in the use of the hydrodynamic model are reviewed, with particular attention to the initial conditions appropriate to hadronic and nuclear collisions. We conclude that local equilibrium is indeed a useful concept but that much effort is needed to assess its accuracy and domain of applicability

  10. Mechanism of air-sea momentum flux from low to high winds

    Science.gov (United States)

    Zhao, Dongliang

    2017-04-01

    In the condition of wind speed less than 20 m/s, many studies have shown that drag coefficient roughly increases linearly with wind speed, which is usually extrapolated to high winds in practice. Since the pioneer work of Powell et al. (2003), both field and laboratory studies have indicated that the drag coefficient begins to decrease or saturate when wind speed is greater than a critical value such as 30 m/s. All the reduction mechanisms proposed up to now are related to the effect of sea spray induced by wave breaking in high winds. This study tries to propose another mechanism that is directly related to wave breaking. Based on the wind-wave growth relations, it is found that drag coefficient increases simultaneously with wave age and wave steepness. The reduction of drag coefficient with wave age that has been shown by previous studies mainly reflect the wind effect because the phase speeds of waves vary in a very narrow range, and can be roughly regarded as constant. It is indicated that two parameters including wave age and wave steepness together control the momentum transfer through air-sea interface. The wave age and wave steepness represent the abilities of wind input and wave receiving energy, respectively. In general, the two parameters are well correlated and can be replaced one another in the condition of low and moderate winds, in which the wave steepness decreases with the increasing wave age. In the condition of high winds, the wave steepness reaches to its upper threshold due to wave breaking, in which wave steepness cannot increase with the decreasing of wave age. At the same time, wave ages become very small, thus drag coefficients begin to decrease with wind speed. It is further suggested that there are two different upper thresholds of wave steepness for laboratory and field waves, which can be applied to explain the reduction of drag coefficient either in laboratory or in field

  11. Air--sea gaseous exchange of PCB at the Venice lagoon (Italy).

    Science.gov (United States)

    Manodori, L; Gambaro, A; Moret, I; Capodaglio, G; Cescon, P

    2007-10-01

    Water bodies are important storage media for persistent organic pollutants (POPs) such as polychlorinated biphenyls (PCBs) and this function is increased in coastal regions because their inputs are higher than those to the open sea. The air-water interface is extensively involved with the global cycling of PCBs because it is the place where they accumulate due to depositional processes and where they may be emitted by gaseous exchange. In this work the parallel collection of air, microlayer and sub-superficial water samples was performed in July 2005 at a site in the Venice lagoon to evaluate the summer gaseous flux of PCBs. The total concentration of PCBs (sum of 118 congeners) in air varies from 87 to 273 pg m(-3), whereas in the operationally defined dissolved phase of microlayer and sub-superficial water samples it varies from 159 to 391 pg L(-1). No significant enrichment of dissolved PCB into the microlayer has been observed, although a preferential accumulation of most hydrophobic congeners occurs. Due to this behaviour, we believe that the modified two-layer model was the most suitable approach for the evaluation of the flux at the air-sea interface, because it takes into account the influence of the microlayer. From its application it appears that PCB volatilize from the lagoon waters with a net flux varying from 58 to 195 ng m(-2)d(-1) (uncertainty: +/-50-64%) due to the strong influence of wind speed. This flux is greater than those reported in the literature for the atmospheric deposition and rivers input and reveals that PCB are actively emitted from the Venice lagoon in summer months.

  12. The air-sea exchange of mercury in the low latitude Pacific and Atlantic Oceans

    Science.gov (United States)

    Mason, Robert P.; Hammerschmidt, Chad R.; Lamborg, Carl H.; Bowman, Katlin L.; Swarr, Gretchen J.; Shelley, Rachel U.

    2017-04-01

    Air-sea exchange is an important component of the global mercury (Hg) cycle as it mediates the rate of increase in ocean Hg, and therefore the rate of change in levels of methylmercury (MeHg), the most toxic and bioaccumulative form of Hg in seafood and the driver of human health concerns. Gas evasion of elemental Hg (Hg0) from the ocean is an important sink for ocean Hg with previous studies suggesting that evasion is not uniform across ocean basins. To understand further the factors controlling Hg0 evasion, and its relationship to atmospheric Hg deposition, we made measurements of dissolved Hg0 (DHg0) in surface waters, along with measurements of Hg in precipitation and on aerosols, and Hg0 in marine air, during two GEOTRACES cruises; GP16 in the equatorial South Pacific and GA03 in the North Atlantic. We contrast the concentrations and estimated evasion fluxes of Hg0 during these cruises, and the factors influencing this exchange. Concentrations of DHg0 and fluxes were lower during the GP16 cruise than during the GA03 cruise, and likely reflect the lower atmospheric deposition in the South Pacific. An examination of Hg/Al ratios for aerosols from the cruises suggests that they were anthropogenically-enriched relative to crustal material, although to a lesser degree for the South Pacific than the aerosols over the North Atlantic. Both regions appear to be net sources of Hg0 to the atmosphere (evasion>deposition) and the reasons for this are discussed. Overall, the studies reported here provide further clarification on the factors controlling evasion of Hg0 from the ocean surface, and the role of anthropogenic inputs in influencing ocean Hg concentrations.

  13. Nonlinear localized excitations in magnets with a weak exchange interaction as a soliton problem

    International Nuclear Information System (INIS)

    Gvozdikova, M.V.; Kovalev, A.S.

    1998-01-01

    The spin dynamics of soliton-like localized excitations in a discrete ferromagnet chain with an easy axis anisotropy and a weak exchange interaction is studied. The connection of these excitations with longwave magnetic solitons is discussed. The localized excitation frequency dependence on exchange interaction is found for a fixed number of spin deviation. It is shown that this dependence modifies essentially when the exchange interaction becomes comparable with an anisotropy value

  14. Weak solutions for Euler systems with non-local interactions

    Czech Academy of Sciences Publication Activity Database

    Carrillo, J. A.; Feireisl, Eduard; Gwiazda, P.; Swierczewska-Gwiazda, A.

    2017-01-01

    Roč. 95, č. 3 (2017), s. 705-724 ISSN 0024-6107 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : Euler system * dissipative solutions * Newtonian interaction Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 0.895, year: 2016 http://onlinelibrary.wiley.com/doi/10.1112/jlms.12027/abstract

  15. The Development of Interactive Mathematics Learning Material Based on Local Wisdom with .swf Format

    Science.gov (United States)

    Abadi, M. K.; Asih, E. C. M.; Jupri, A.

    2018-05-01

    Learning materials used by students and schools in Serang district are lacking because they do not contain local wisdom content. The aim of this study is to improve the deficiencies in learning materials used by students by making interactive materials based on local wisdom content with format .swf. The method in this research is research and development (RnD) with ADDIE model. In making this interactive learning materials in accordance with the stages of the ADDIE study. The results of this study include interactive learning materials based on local wisdom. This learning material is suitable for digital students.

  16. Semi-local invariance in Ising models with multi-spin interaction

    International Nuclear Information System (INIS)

    Lipowski, A.

    1996-08-01

    We examine implications of semi-local invariance in Ising models with multispin interaction. In ergodic models all spin-spin correlation functions vanish and the local symmetry is the same as in locally gauge-invariant models. The d = 3 model with four-spin interaction is nonergodic at low temperature but the magnetic symmetry remains unbroken. The d = 3 model with eight-spin interaction is ergodic but undergoes the phase transition and most likely its low-temperature phase is characterized by a nonlocal order parameter. (author). 7 refs, 1 fig

  17. The human core exosome interacts with differentially localized processive RNases

    DEFF Research Database (Denmark)

    Tomecki, Rafal; Kristiansen, Maiken Søndergaard; Lykke-Andersen, Søren

    2010-01-01

    The eukaryotic RNA exosome is a ribonucleolytic complex involved in RNA processing and turnover. It consists of a nine-subunit catalytically inert core that serves a structural function and participates in substrate recognition. Best defined in Saccharomyces cerevisiae, enzymatic activity comes...... from the associated subunits Dis3p (Rrp44p) and Rrp6p. The former is a nuclear and cytoplasmic RNase II/R-like enzyme, which possesses both processive exo- and endonuclease activities, whereas the latter is a distributive RNase D-like nuclear exonuclease. Although the exosome core is highly conserved......, identity and arrangements of its catalytic subunits in different vertebrates remain elusive. Here, we demonstrate the association of two different Dis3p homologs--hDIS3 and hDIS3L--with the human exosome core. Interestingly, these factors display markedly different intracellular localizations: hDIS3...

  18. Distribution and air-sea exchange of mercury (Hg in the Yellow Sea

    Directory of Open Access Journals (Sweden)

    Z. J. Ci

    2011-03-01

    Full Text Available The Yellow Sea, surrounded by East China and the Korea Peninsula, is a potentially important receptor for anthropogenic mercury (Hg emissions from East Asia. However, there is little documentation about the distribution and cycle of Hg in this marine system. During the cruise covering the Yellow Sea in July 2010, gaseous elemental mercury (GEM or Hg(0 in the atmosphere, total Hg (THg, reactive Hg (RHg and dissolved gaseous mercury (DGM, largely Hg(0 in the waters were measured aboard the R/V Kexue III. The mean (±SD concentration of GEM over the entire cruise was 2.61 ± 0.50 ng m−3 (range: 1.68 to 4.34 ng m−3, which were generally higher than other open oceans. The spatial distribution of GEM generally reflected a clear gradient with high levels near the coast of East China and low levels in open waters, suggesting the significant atmospheric Hg outflow from East China. The mean concentration of THg in the surface waters was 1.69 ± 0.35 ng l−1 and the RHg accounted for a considerable fraction of THg (RHg: 1.08 ± 0.28 ng l−1, %RHg/THg = 63.9%. The mean concentration of DGM in the surface waters was 63.9 ± 13.7 pg l−1 and always suggested the supersaturation of Hg(0 in the surface waters with respect to Hg(0 in the atmosphere (the degree of saturation: 7.8 ± 2.3 with a range of 3.6–14.0. The mean Hg(0 flux at the air-sea interface was estimated to be 18.3 ± 11.8 ng m−2 h−1 based on a two-layer exchange model. The high wind speed and DGM levels induced the extremely high Hg(0 emission rates. Measurements at three stations showed no clear vertical patterns of DGM, RHg and THg in the water column. Overall, the elevated Hg levels in the Yellow Sea compared with other open oceans suggested that the human activity has influenced the oceanic Hg cycle downwind of East Asia.

  19. Elemental mercury in coastal seawater of Yellow Sea, China: Temporal variation and air-sea exchange

    Science.gov (United States)

    Ci, Zhijia; Zhang, Xiaoshan; Wang, Zhangwei

    2011-01-01

    Dissolved gaseous mercury (DGM, largely Hg(0)) in coastal seawater and gaseous elemental mercury (GEM or Hg(0)) in the atmosphere were simultaneously measured on the coast of the Yellow Sea, China in four different seasons (2008-09). Mean concentrations (±SD) of DGM and GEM over the study period were 34.0 ± 26.1 pg L -1 and 2.55 ± 0.98 ng m -3, respectively. DGM concentrations and the degree of DGM saturation ( Sa) exhibited distinct seasonal variation with the order of summer (DGM: 69.0 ± 23.3 pg L -1, Sa: 11.00 ± 5.92) > fall (27.0 ± 16.4 pg L -1, 3.50 ± 2.60) > spring (23.0 ± 8.7 pg L -1, 2.00 ± 0.98) > winter (16.0 ± 6.0 pg L -1, 0.96 ± 0.39). Under typical meteorological condition with low wind speed and intensive solar radiation in warm seasons, DGM usually exhibited the clear diurnal variation with elevated levels around noon and low levels in morning and afternoon. The diurnal and seasonal variation of DGM indicated the importance of photochemical DGM formation in the seawater. A consistent low DGM levels in high wind speed condition suggested that the biological activity probably influenced the DGM formation. There was no significant correlation between DGM and total mercury (THg), reactive mercury (RHg), dissolved organic carbon (DOC) in the seawater, indicating that THg/RHg and DOC might be not the controlling factors for the DGM formation in our study region. Based on the data of DGM and GEM and a two-layer gas exchange model, Hg(0) fluxes (in the unit of ng m -2 h -1) at air-sea interface were 0.51 ± 1.29 over the entire study period with 0.89 ± 1.84 in fall, 0.88 ± 1.38 in summer, 0.32 ± 0.71 in spring, and -0.06 ± 0.64, a slightly net Hg(0) deposition rate, in winter, respectively.

  20. Local thermodynamics and the generalized Gibbs-Duhem equation in systems with long-range interactions.

    Science.gov (United States)

    Latella, Ivan; Pérez-Madrid, Agustín

    2013-10-01

    The local thermodynamics of a system with long-range interactions in d dimensions is studied using the mean-field approximation. Long-range interactions are introduced through pair interaction potentials that decay as a power law in the interparticle distance. We compute the local entropy, Helmholtz free energy, and grand potential per particle in the microcanonical, canonical, and grand canonical ensembles, respectively. From the local entropy per particle we obtain the local equation of state of the system by using the condition of local thermodynamic equilibrium. This local equation of state has the form of the ideal gas equation of state, but with the density depending on the potential characterizing long-range interactions. By volume integration of the relation between the different thermodynamic potentials at the local level, we find the corresponding equation satisfied by the potentials at the global level. It is shown that the potential energy enters as a thermodynamic variable that modifies the global thermodynamic potentials. As a result, we find a generalized Gibbs-Duhem equation that relates the potential energy to the temperature, pressure, and chemical potential. For the marginal case where the power of the decaying interaction potential is equal to the dimension of the space, the usual Gibbs-Duhem equation is recovered. As examples of the application of this equation, we consider spatially uniform interaction potentials and the self-gravitating gas. We also point out a close relationship with the thermodynamics of small systems.

  1. Positronium annihilation in liquids in the framework of non-local interaction

    International Nuclear Information System (INIS)

    Mukherjee, Tapas; Dutta, Dhanadeep

    2012-01-01

    In the bubble model of ortho positronium (o-Ps) annihilation in liquid the origin of the trapping of o-Ps is the electron-exchange repulsive interaction between the electron of o-Ps and the electron of the medium. The corresponding effective interaction is non-local in nature. However, in the prevalent bubble model, this effective interaction is usually treated as local (model) potential (sharp or smooth). In the present study, we have taken an approach to consider this trapping interaction as non-local in nature, which is included through a model separable non-local function to tackle the problem in analytically solvable manner. The analytical calculations show that this non-local interaction effectively acts as a gauge potential in the energy of the Ps atom in parameter (bubble radius) space. The computed bubble variables obtained using experimental Ps annihilation data are shown. A comparison between the present data with the calculated results using prevalent bubble model has been presented. Discussions have been made on the input parameter dependencies of the computed data. - Highlights: ► Bubble model has been modified by considering positronium-atom non-local interaction. ► No straight forward correlation between bubble size and effective potential is observed. ► Non-local potential acts as a guage potential.

  2. Characteristics of low-frequency oscillation intensity of air-sea turbulent heat fluxes over the northwest Pacific

    Institute of Scientific and Technical Information of China (English)

    LI Gen; REN BaoHua; ZHENG JianOiu; WANG Jun

    2009-01-01

    Based on the daily turbulent heat fluxes and related meteorological variables dataeets (1985-2006) from Objectively Analyzed air-sea Fluxes (OAFlux) Project of Woods Hole Oceanographic Institution (WHOI), characteristics of low-frequency oscillation intensity of air-sea turbulent heat fluxes over the northwest Pacific are analyzed by linear perturbation method and correlation analysis. It can be concluded that: 1) the distribution of low-frequency oscillation intensity of latent heat flux (LHF) over the northwest Pacific is mainly affected by that of low-frequency oscillation intensity of anomalous air-eea humidity gradient (△q') as well as mean air-eea humidity gradient (△q), while the distribution of low-frequency oscillation Intensity of sensible heat flux (SHF) is mainly affected by that of low-frequency oscillation intensity of anomalous air-sea temperature gradient (△T'). 2) The low-frequency oscillation of turbulent heat fluxes over the northwest Pacific is the strongest in winter and the weakest in summer. And the seasonal transition of low-frequency oscillation intensity of LHF is jointly influenced by those of low-frequency oscillation intensity of △q', low-frequency oscillation intensity of anomalous wind speed (U'), △q and mean wind speed (U), while the seasonal transition of low-frequency oscillation intensity of SHF is mainly influenced by those of low-frequency oscillation Intensity of △T' and U. 3) Over the tropical west Pacific and sea areas north of 20ON, the low-frequency oscillation of LHF (SHF) is mainly influenced by atmospheric variables qa' (Ta') and U', indicating an oceanic response to overlying atmospheric forcing. In contrast, over the tropical eastern and central Pacific south of 20°N, qs' (Ts') also greatly influences the low-frequency oscillation of LHF (SHF).

  3. Air-sea heat flux control on the Yellow Sea Cold Water Mass intensity and implications for its prediction

    Science.gov (United States)

    Zhu, Junying; Shi, Jie; Guo, Xinyu; Gao, Huiwang; Yao, Xiaohong

    2018-01-01

    The Yellow Sea Cold Water Mass (YSCWM), which occurs during summer in the central Yellow Sea, plays an important role in the hydrodynamic field, nutrient cycle and biological species. Based on water temperature observations during the summer from 1978 to 1998 in the western Yellow Sea, five specific YSCWM years were identified, including two strong years (1984 and 1985), two weak years (1989 and 1995) and one normal year (1992). Using a three-dimensional hydrodynamic model, the YSCWM formation processes in these five years were simulated and compared with observations. In general, the YSCWM began forming in spring, matured in summer and gradually disappeared in autumn of every year. The 8 °C isotherm was used to indicate the YSCWM boundary. The modelled YSCWM areas in the two strong years were approximately two times larger than those in the two weak years. Based on the simulations in the weak year of 1995, ten numerical experiments were performed to quantify the key factors influencing the YSCWM intensity by changing the initial water condition in the previous autumn, air-sea heat flux, wind, evaporation, precipitation and sea level pressure to those in the strong year of 1984, respectively. The results showed that the air-sea heat flux was the dominant factor influencing the YSCWM intensity, which contributed about 80% of the differences of the YSCWM average water temperature at a depth of 50 m. In addition, the air-sea heat flux in the previous winter had a determining effect, contributing more than 50% of the differences between the strong and weak YSCWM years. Finally, a simple formula for predicting the YSCWM intensity was established by using the key influencing factors, i.e., the sea surface temperature before the cooling season and the air-sea heat flux during the cooling season from the previous December to the current February. With this formula, instead of a complicated numerical model, we were able to roughly predict the YSCWM intensity for the

  4. APO observations in Southern Greenland: evaluation of modelled air-sea O2 and CO2 fluxes

    Science.gov (United States)

    Bonne, Jean-Louis; Bopp, Laurent; Delmotte, Marc; Cadule, Patricia; Resplandy, Laure; Nevison, Cynthia; Manizza, Manfredi; Valentin Lavric, Jost; Manning, Andrew C.; Masson-Delmotte, Valérie

    2014-05-01

    Since September 2007, the atmospheric CO2 mole fraction and O2/N2 ratio (a proxy for O2 concentration) have been monitored continuously at the coastal site of Ivittuut, southern Greenland (61.21° N, 48.17° W). From 2007 to 2013, our measurements show multi-annual trends of +2.0 ppm/year and -20 per meg/year respectively for CO2 and O2/N2, with annual average peak-to-peak seasonal amplitudes of 14+/-1 ppm and 130+/-15 per meg. We investigate the implications of our data set in terms of APO (Atmospheric Potential Oxygen). This tracer, obtained by a linear combination of CO2 and O2/N2 data, is invariant to CO2 and O2 exchanges in the land biota, but sensitive to the oceanic component of the O2 cycle. It is used as a bridge to evaluate air-sea CO2 and O2 fluxes from atmospheric variations of CO2 and O2/N2. Global ocean biogeochemical models produce estimates of CO2 and O2 air-sea fluxes. Atmospheric APO variations can be simulated through transportation of these fluxes in the atmosphere by Eulerian transport models. Thus, model values of atmospheric APO can be extracted at the station location. This study is based on air-sea flux outputs from CMIP5 simulations. After atmospheric transportation, they give access to atmospheric APO climatologies which can be compared, in terms of seasonal cycles and inter-annual variability, to the in situ observations. A preliminary study is based on the CCSM ocean model air-sea fluxes transported in the atmosphere with the MATCH transport model, over the period 1979-2004. The amplitude of the APO seasonal cycle is correctly captured, but year to year variations on this seasonal cycle appears to be underestimated compared to observations. The LMDZ atmospheric transport model is also used to transport the ocean fluxes from five CMIP5 models, over the period 1979-2005, showing different amplitudes and timings of APO seasonal cycles. This methodology is a first step to evaluate the origin of observed APO variations at our site and then

  5. Carbon isotope evidence for the latitudinal distribution and wind speed dependence of the air-sea gas transfer velocity

    International Nuclear Information System (INIS)

    Krakauer, Nir Y.

    2006-01-01

    The air-sea gas transfer velocity is an important determinant of the exchange of gases, including CO 2 , between the atmosphere and ocean, but the magnitude of the transfer velocity and what factors control it remains poorly known. Here, we use oceanic and atmospheric observations of 14 C and 13 C to constrain the global mean gas transfer velocity as well as the exponent of its wind speed dependence, utilizing the distinct signatures left by the air-sea exchange of 14 CO 2 and 13 CO 2 . While the atmosphere and ocean inventories of 14 CO 2 and 13 CO 2 constrain the mean gas transfer velocity, the latitudinal pattern in the atmospheric and oceanic 14 C and 13 C distributions contain information about the wind speed dependence. We computed the uptake of bomb 14 C by the ocean for different transfer velocity patterns using pulse response functions from an ocean general circulation model, and evaluated the match between the predicted bomb 14 C concentrations and observationally based estimates for the 1970s-1990s. Using a wind speed climatology based on satellite measurements, we solved either for the best-fit global relationship between gas exchange and mean wind speed or for the mean gas transfer velocity over each of 11 ocean regions. We also compared the predicted consequences of different gas exchange relationships on the rate of change and interhemisphere gradient of 14 C in atmospheric CO 2 with tree-ring and atmospheric measurements. Our results suggest that globally, the dependence of the air-sea gas transfer velocity on wind speed is close to linear, with an exponent of 0.5 ± 0.4, and that the global mean gas transfer velocity at a Schmidt number of 660 is 20 ± 3 cm/hr, similar to the results of previous analyses. We find that the air-sea flux of 13 C estimated from atmosphere and ocean observations also suggests a lower than quadratic dependence of gas exchange on wind speed

  6. The Green-Kubo formula for locally interacting fermionic open systems

    CERN Document Server

    Jaksic, V; Pillet, C A

    2006-01-01

    We consider a model describing finitely many free Fermi gas reservoirs coupled by local interactions and prove the Green-Kubo formulas and the Onsager reciprocity relations for heat and charge fluxes generated by temperature and chemical potential differentials.

  7. Local shell-to-shell energy transfer via nonlocal interactions in fluid ...

    Indian Academy of Sciences (India)

    However, the shell-to-shell energy transfer rate is found to be local and forward. .... interaction was strong, but the energy exchange occurred predominantly between ..... The wave-number range considered is in the inverse cascade regime.

  8. New interaction paths in the energy landscape: the role of local energy initiatives

    OpenAIRE

    de Boer, Jessica; Zuidema, Christian; Gugerell, Katharina

    2018-01-01

    Energy transition is an encompassing process which not only involves the energy system but also the landscape in which the energy system is embedded. Renewable energy is triggering new interactions with local landscapes in physical, socio-economic and institutional senses. We capture these interactions using the energy landscape concept, which expresses the interdependence of the energy system with the landscape. We aim to understand whether and how local energy initiatives facilitate this in...

  9. Return on interactivity? The characteristics and effectiveness of Web sites during the 2010 Dutch local elections

    NARCIS (Netherlands)

    van Noort, G.; Vliegenthart, R.; Kruikemeier, S.

    2016-01-01

    This article examines the use of interactive features (i.e., discussion and participation features) on the Web sites of Dutch political parties during the 2010 local elections campaign and investigates whether a relationship exists between interactivity and election results. A manual content

  10. Air-Sea CO2 fluxes in the Atlantic as measured during boreal spring and autumn

    Directory of Open Access Journals (Sweden)

    A. F. Ríos

    2010-05-01

    Full Text Available A total of fourteen hydrographic cruises from 2000 to 2008 were conducted during the spring and autumn seasons between Spain and the Southern Ocean under the framework of the Spanish research project FICARAM. The underway measurements were processed and analysed to describe the meridional air-sea CO2 fluxes (FCO2 in the covered sector of the Atlantic Ocean. The data has been grouped into different biogeochemical oceanographic provinces based on thermohaline characteristics. The spatial and temporal distributions of FCO2 followed expected distributions and annual trends reproducing the recent climatological ΔfCO2 estimations with a mean difference of −3 ± 18 μatm (Takahashi et al., 2009. The reduction in the CO2 saturation along the meridional FICARAM cruises represented an increase of 0.02 ± 0.14 mol m−2 yr−1 in the ocean uptake of atmospheric CO2. The subtropical waters in both Hemispheres acted as a sink of atmospheric CO2 during the successive spring seasons and as a source in autumn. The coarse reduction of the ocean uptake of atmospheric CO2 observed in the North Atlantic Ocean was linked to conditions of negative phase of the North Atlantic Oscillation that prevailed during the FICARAM period. Surface waters in the North Equatorial Counter Current revealed a significant long-term decrease of sea surface salinity of −0.16 ± 0.01 yr−1 coinciding with a declination of −3.5 ± 0.9 μatm yr−1 in the air–sea disequilibrium of CO2 fugacity and a rise of oceanic CO2 uptake of −0.09 ± 0.03 mol m−2 yr−1. The largest CO2 source was located in the equatorial upwelling system. These tropical waters that reached emissions of 0.7 ± 0.5 and 1.0 ± 0.7 mol m−2 y−1 in spring and autumn, respectively, showed an interannual warming of 0.11 ± 0.03 °C yr−1 and a wind speed decrease of −0.58 ± 0.14 m s−1 yr−1 in spring cruises which suggest the weakening of upwelling events associated with warm El Niño – Southern

  11. Stability of stationary states of non-local equations with singular interaction potentials

    KAUST Repository

    Fellner, Klemens

    2011-04-01

    We study the large-time behaviour of a non-local evolution equation for the density of particles or individuals subject to an external and an interaction potential. In particular, we consider interaction potentials which are singular in the sense that their first derivative is discontinuous at the origin.For locally attractive singular interaction potentials we prove under a linear stability condition local non-linear stability of stationary states consisting of a finite sum of Dirac masses. For singular repulsive interaction potentials we show the stability of stationary states of uniformly bounded solutions under a convexity condition.Finally, we present numerical simulations to illustrate our results. © 2010 Elsevier Ltd.

  12. Many-body Anderson localization of strongly interacting bosons in random lattices

    International Nuclear Information System (INIS)

    Katzer, Roman

    2015-05-01

    In the present work, we investigate the problem of many-body localization of strongly interacting bosons in random lattices within the disordered Bose-Hubbard model. This involves treating both the local Mott-Hubbard physics as well as the non-local quantum interference processes, which give rise to the phenomenon of Anderson localization, within the same theory. In order to determine the interaction induced transition to the Mott insulator phase, it is necessary to treat the local particle interaction exactly. Therefore, here we use a mean-field approach that approximates only the kinetic term of the Hamiltonian. This way, the full problem of interacting bosons on a random lattice is reduced to a local problem of a single site coupled to a particle bath, which has to be solved self-consistently. In accordance to previous works, we find that a finite disorder width leads to a reduced size of the Mott insulating regions. The transition from the superfluid phase to the Bose glass phase is driven by the non-local effect of Anderson localization. In order to describe this transition, one needs to work within a theory that is non-local as well. Therefore, here we introduce a new approach to the problem. Based on the results for the local excitation spectrum obtained within the mean-field theory, we reduce the full, interacting model to an effective, non-interacting model by applying a truncation scheme to the Hilbert space. Evaluating the long-ranged current density within this approximation, we identify the transition from the Bose glass to the superfluid phase with the Anderson transition of the effective model. Resolving this transition using the self-consistent theory of localization, we obtain the full phase diagram of the disordered Bose-Hubbard model in the regime of strong interaction and larger disorder. In accordance to the theorem of inclusions, we find that the Mott insulator and the superfluid phase are always separated by the compressible, but insulating

  13. SMYD3 interacts with HTLV-1 Tax and regulates subcellular localization of Tax.

    Science.gov (United States)

    Yamamoto, Keiyu; Ishida, Takaomi; Nakano, Kazumi; Yamagishi, Makoto; Yamochi, Tadanori; Tanaka, Yuetsu; Furukawa, Yoichi; Nakamura, Yusuke; Watanabe, Toshiki

    2011-01-01

    HTLV-1 Tax deregulates signal transduction pathways, transcription of genes, and cell cycle regulation of host cells, which is mainly mediated by its protein-protein interactions with host cellular factors. We previously reported an interaction of Tax with a histone methyltransferase (HMTase), SUV39H1. As the interaction was mediated by the SUV39H1 SET domain that is shared among HMTases, we examined the possibility of Tax interaction with another HMTase, SMYD3, which methylates histone H3 lysine 4 and activates transcription of genes, and studied the functional effects. Expression of endogenous SMYD3 in T cell lines and primary T cells was confirmed by immunoblotting analysis. Co-immuno-precipitaion assays and in vitro pull-down assay indicated interaction between Tax and SMYD3. The interaction was largely dependent on the C-terminal 180 amino acids of SMYD3, whereas the interacting domain of Tax was not clearly defined, although the N-terminal 108 amino acids were dispensable for the interaction. In the cotransfected cells, colocalization of Tax and SMYD3 was indicated in the cytoplasm or nuclei. Studies using mutants of Tax and SMYD3 suggested that SMYD3 dominates the subcellular localization of Tax. Reporter gene assays showed that nuclear factor-κB activation promoted by cytoplasmic Tax was enhanced by the presence of SMYD3, and attenuated by shRNA-mediated knockdown of SMYD3, suggesting an increased level of Tax localization in the cytoplasm by SMYD3. Our study revealed for the first time Tax-SMYD3 direct interaction, as well as apparent tethering of Tax by SMYD3, influencing the subcellular localization of Tax. Results suggested that SMYD3-mediated nucleocytoplasmic shuttling of Tax provides one base for the pleiotropic effects of Tax, which are mediated by the interaction of cellular proteins localized in the cytoplasm or nucleus. © 2010 Japanese Cancer Association.

  14. Ways of Civil Society Institutes Interaction with Local Governments in the Sphere of Anti-Corruption

    Directory of Open Access Journals (Sweden)

    Kristina V. Кondrashova

    2016-06-01

    Full Text Available In this article author analyzes ways of civil society institutes interaction with local government bodies in the sphere of anti-corruption, legal regulation in the sphere of anti-corruption is analyzed (including the Federal law of December 25, 2008 No. 273-FZ "About anti-corruption", opinions of scientists-jurists are researched. In the conclusion the author reviews 4 examples mutually beneficial cooperation of institutes of civil society and local government bodies.

  15. Fire Danger of Interaction Processes of Local Sources with a Limited Energy Capacity and Condensed Substances

    OpenAIRE

    Glushkov, Dmitry Olegovich; Strizhak, Pavel Alexandrovich; Vershinina, Kseniya Yurievna

    2015-01-01

    Numerical investigation of flammable interaction processes of local energy sources with liquid condensed substances has been carried out. Basic integrated characteristic values of process have been defined – ignition delay time at different energy sources parameters. Recommendations have been formulated to ensure fire safety of technological processes, characterized by possible local heat sources formation (cutting, welding, friction, metal grinding etc.) in the vicinity of storage areas, tra...

  16. Fire Danger of Interaction Processes of Local Sources with a Limited Energy Capacity and Condensed Substances

    Directory of Open Access Journals (Sweden)

    Glushkov Dmitrii O.

    2015-01-01

    Full Text Available Numerical investigation of flammable interaction processes of local energy sources with liquid condensed substances has been carried out. Basic integrated characteristic values of process have been defined – ignition delay time at different energy sources parameters. Recommendations have been formulated to ensure fire safety of technological processes, characterized by possible local heat sources formation (cutting, welding, friction, metal grinding etc. in the vicinity of storage areas, transportation, transfer and processing of flammable liquids (gasoline, kerosene, diesel fuel.

  17. Theoretical Bases of the Model of Interaction of the Government and Local Government Creation

    OpenAIRE

    Nikolay I. Churinov

    2015-01-01

    Article is devoted to questions of understanding of a theoretical component: systems of interaction of bodies of different levels of the government. Author researches historical basis of the studied subject by research of foreign and domestic scientific experience in area of the theory of the state and the law. Much attention is paid to the scientific aspect of the question. By empirical approach interpretation of the theory of interaction of public authorities and local government, and also ...

  18. Calculations of hyperfine interactions in transition metal compounds in the local density approximation

    International Nuclear Information System (INIS)

    Guenzburger, D.J.R.

    1982-01-01

    A survey is made of some theoretical calculations of electrostatic and magnetic hyperfine interactions in transition metal compounds and complex irons. The molecular orbital methods considered are the Multiple Scattering and Discrete Variational, in which the local Xα approximation for the exchange interaction is employed. Emphasis is given to the qualitative informations, derived from the calculations, relating the hyperfine parameters to characteristics of the chemical bonds. (Author) [pt

  19. Using wind setdown and storm surge on Lake Erie to calibrate the air-sea drag coefficient.

    Science.gov (United States)

    Drews, Carl

    2013-01-01

    The air-sea drag coefficient controls the transfer of momentum from wind to water. In modeling storm surge, this coefficient is a crucial parameter for estimating the surge height. This study uses two strong wind events on Lake Erie to calibrate the drag coefficient using the Coupled Ocean Atmosphere Wave Sediment Transport (COAWST) modeling system and the the Regional Ocean Modeling System (ROMS). Simulated waves are generated on the lake with Simulating WAves Nearshore (SWAN). Wind setdown provides the opportunity to eliminate wave setup as a contributing factor, since waves are minimal at the upwind shore. The study finds that model results significantly underestimate wind setdown and storm surge when a typical open-ocean formulation without waves is used for the drag coefficient. The contribution of waves to wind setdown and storm surge is 34.7%. Scattered lake ice also increases the effective drag coefficient by a factor of 1.1.

  20. Distribution and air-sea exchange of current-use pesticides (CUPs) from East Asia to the high Arctic Ocean.

    Science.gov (United States)

    Zhong, Guangcai; Xie, Zhiyong; Cai, Minghong; Möller, Axel; Sturm, Renate; Tang, Jianhui; Zhang, Gan; He, Jianfeng; Ebinghaus, Ralf

    2012-01-03

    Surface seawater and marine boundary layer air samples were collected on the ice-breaker R/V Xuelong (Snow Dragon) from the East China Sea to the high Arctic (33.23-84.5° N) in July to September 2010 and have been analyzed for six current-use pesticides (CUPs): trifluralin, endosulfan, chlorothalonil, chlorpyrifos, dacthal, and dicofol. In all oceanic air samples, the six CUPs were detected, showing highest level (>100 pg/m(3)) in the Sea of Japan. Gaseous CUPs basically decreased from East Asia (between 36.6 and 45.1° N) toward Bering and Chukchi Seas. The dissolved CUPs in ocean water ranged widely from air. Trifluralin in seawater was relatively high in the Sea of Japan (35.2° N) and evenly distributed between 36.9 and 72.5° N, but it remained below the detection limit at the highest northern latitudes in Chukchi Sea. In contrast with other CUPs, concentrations of chlorothalonil and dacthal were more abundant in Chukchi Sea and in East Asia. The air-sea gas exchange of CUPs was generally dominated by net deposition. Latitudinal trends of fugacity ratios of α-endosulfan, chlorothalonil, and dacthal showed stronger deposition of these compounds in East Asia than in Chukchi Sea, while trifluralin showed stronger deposition in Chukchi Sea (-455 ± 245 pg/m(2)/day) than in the North Pacific (-241 ± 158 pg/m(2)/day). Air-sea gas exchange of chlorpyrifos varied from net volatilizaiton in East Asia (<40° N) to equilibrium or net deposition in the North Pacific and the Arctic.

  1. Community metabolism and air-sea CO[sub 2] fluxes in a coral reef ecosystem (Moorea, French Polynesia)

    Energy Technology Data Exchange (ETDEWEB)

    Gattuso, J P; Pichon, M; Delesalle, B; Frankignoulle, M [Observatory of European Oceanology (Monaco)

    1993-06-01

    Community metabolism (primary production, respiration and calcification) and air-sea CO[sub 2] fluxes of the 'Tiahura barrier reef' (Moorea, French Polynesia) were investigated in November and December 1991. Gross production and respiration were respectively 640.2 to 753 and 590.4 to 641.5 mmol (O[sub 2] or CO[sub 2]) m[sup 2] d[sup -1] (7.7 to 9.0 and 7.1 to 7.7 g C m)[sup 2] d[sup -1] and the reef displayed a slightly negative excess (net) production. The contribution of planktonic primary production to reef metabolism was negligible (0.15% of total gross production). Net calcification was positive both during the day and at night; its daily value was 243 mmol CaCO[sub 3] m[sup 2] d[sup -1] (24.3 g CaCO)[sub 3] m[sup -2] d[sup -1]. Reef metabolism decreased seawater total CO[sub 2] by 433.3 mmol m[sup 2] d[sup -1]. The air-sea CO[sub 2] fluxes were close to zero in the ocean but displayed a strong daily pattern at the reef front and the back reef. Fluxes were positive (CO[sub 2] evasion) at night, decreased as irradiance increased and were negative during the day (CO[sub 2] invasion). Integration of the fluxes measured during a 24 h experiment at the back reef showed that the reef was a source of CO[sub 2] to the atmosphere (1.5 mmol m[sup 2] d[sup -1]).

  2. A quantum annealing architecture with all-to-all connectivity from local interactions

    Science.gov (United States)

    Lechner, Wolfgang; Hauke, Philipp; Zoller, Peter

    2015-01-01

    Quantum annealers are physical devices that aim at solving NP-complete optimization problems by exploiting quantum mechanics. The basic principle of quantum annealing is to encode the optimization problem in Ising interactions between quantum bits (qubits). A fundamental challenge in building a fully programmable quantum annealer is the competing requirements of full controllable all-to-all connectivity and the quasi-locality of the interactions between physical qubits. We present a scalable architecture with full connectivity, which can be implemented with local interactions only. The input of the optimization problem is encoded in local fields acting on an extended set of physical qubits. The output is—in the spirit of topological quantum memories—redundantly encoded in the physical qubits, resulting in an intrinsic fault tolerance. Our model can be understood as a lattice gauge theory, where long-range interactions are mediated by gauge constraints. The architecture can be realized on various platforms with local controllability, including superconducting qubits, NV-centers, quantum dots, and atomic systems. PMID:26601316

  3. A quantum annealing architecture with all-to-all connectivity from local interactions.

    Science.gov (United States)

    Lechner, Wolfgang; Hauke, Philipp; Zoller, Peter

    2015-10-01

    Quantum annealers are physical devices that aim at solving NP-complete optimization problems by exploiting quantum mechanics. The basic principle of quantum annealing is to encode the optimization problem in Ising interactions between quantum bits (qubits). A fundamental challenge in building a fully programmable quantum annealer is the competing requirements of full controllable all-to-all connectivity and the quasi-locality of the interactions between physical qubits. We present a scalable architecture with full connectivity, which can be implemented with local interactions only. The input of the optimization problem is encoded in local fields acting on an extended set of physical qubits. The output is-in the spirit of topological quantum memories-redundantly encoded in the physical qubits, resulting in an intrinsic fault tolerance. Our model can be understood as a lattice gauge theory, where long-range interactions are mediated by gauge constraints. The architecture can be realized on various platforms with local controllability, including superconducting qubits, NV-centers, quantum dots, and atomic systems.

  4. Short range part of the NN interaction: Equivalent local potentials from quark exchange kernels

    International Nuclear Information System (INIS)

    Suzuk, Y.; Hecht, K.T.

    1983-01-01

    To focus on the nature of the short range part of the NN interaction, the intrinsically nonlocal interaction among the quark constituents of colorless nucleons is converted to an equivalent local potential using resonating group kernels which can be evaluated in analytic form. The WKB approximation based on the Wigner transform of the nonlocal kernels has been used to construct the equivalent potentials without recourse to the long range part of the NN interaction. The relative importance of the various components of the exchange kernels can be examined: The results indicate the importance of the color magnetic part of the exchange kernel for the repulsive part in the (ST) = (10), (01) channels, in particular since the energy dependence of the effective local potentials seems to be set by this term. Large cancellations of color Coulombic and quark confining contributions, together with the kinetic energy and norm exchange terms, indicate that the exact nature of the equivalent local potential may be sensitive to the details of the parametrization of the underlying quark-quark interaction. The equivalent local potentials show some of the characteristics of the phenomenological short range terms of the Paris potential

  5. New interaction paths in the energy landscape: the role of local energy initiatives

    NARCIS (Netherlands)

    de Boer, Jessica; Zuidema, Christian; Gugerell, Katharina

    2018-01-01

    Energy transition is an encompassing process which not only involves the energy system but also the landscape in which the energy system is embedded. Renewable energy is triggering new interactions with local landscapes in physical, socio-economic and institutional senses. We capture these

  6. Chimera regimes in a ring of oscillators with local nonlinear interaction

    Science.gov (United States)

    Shepelev, Igor A.; Zakharova, Anna; Vadivasova, Tatiana E.

    2017-03-01

    One of important problems concerning chimera states is the conditions of their existence and stability. Until now, it was assumed that chimeras could arise only in ensembles with nonlocal character of interactions. However, this assumption is not exactly right. In some special cases chimeras can be realized for local type of coupling [1-3]. We propose a simple model of ensemble with local coupling when chimeras are realized. This model is a ring of linear oscillators with the local nonlinear unidirectional interaction. Chimera structures in the ring are found using computer simulations for wide area of values of parameters. Diagram of the regimes on plane of control parameters is plotted and scenario of chimera destruction are studied when the parameters are changed.

  7. Local versus global interactions in nonequilibrium transitions: A model of social dynamics

    Science.gov (United States)

    González-Avella, J. C.; Eguíluz, V. M.; Cosenza, M. G.; Klemm, K.; Herrera, J. L.; San Miguel, M.

    2006-04-01

    A nonequilibrium system of locally interacting elements in a lattice with an absorbing order-disorder phase transition is studied under the effect of additional interacting fields. These fields are shown to produce interesting effects in the collective behavior of this system. Both for autonomous and external fields, disorder grows in the system when the probability of the elements to interact with the field is increased. There exists a threshold value of this probability beyond which the system is always disordered. The domain of parameters of the ordered regime is larger for nonuniform local fields than for spatially uniform fields. However, the zero field limit is discontinous. In the limit of vanishingly small probability of interaction with the field, autonomous or external fields are able to order a system that would fall in a disordered phase under local interactions of the elements alone. We consider different types of fields which are interpreted as forms of mass media acting on a social system in the context of Axelrod’s model for cultural dissemination.

  8. Seasonal atmospheric deposition and air-sea gas exchange of polycyclic aromatic hydrocarbons over the Yangtze River Estuary, East China Sea: Implications for source-sink processes

    Science.gov (United States)

    Jiang, Yuqing; Lin, Tian; Wu, Zilan; Li, Yuanyuan; Li, Zhongxia; Guo, Zhigang; Yao, Xiaohong

    2018-04-01

    In this work, air samples and surface seawater samples covering four seasons from March 2014 to January 2015 were collected from a background receptor site in the YRE to explore the seasonal fluxes of air-sea gas exchange and dry and wet deposition of 15 polycyclic aromatic hydrocarbons (PAHs) and their source-sink processes at the air-sea interface. The average dry and wet deposition fluxes of 15 PAHs were estimated as 879 ± 1393 ng m-2 d-1 and 755 ± 545 ng m-2 d-1, respectively. Gaseous PAH release from seawater to the atmosphere averaged 3114 ± 1999 ng m-2 d-1 in a year round. The air-sea gas exchange of PAHs was the dominant process at the air-sea interface in the YRE as the magnitude of volatilization flux of PAHs exceeded that of total dry and wet deposition. The gas PAH exchange flux was dominated by three-ring PAHs, with the highest value in summer and lowest in winter, indicating a marked seasonal variation owing to differences in Henry's law constants associated with temperature, as well as wind speed and gaseous-dissolved gradient among seasons. Based on the simplified mass balance estimation, a net 11 tons y-1 of PAHs (mainly three-ring PAHs) were volatilized from seawater to the atmosphere in a ∼20,000 km2 area in the YRE. Other than the year-round Yangtze River input and ocean ship emissions, the selective release of low-molecular-weight PAHs from bottom sediments in winter due to resuspension triggered by the East Asian winter monsoon is another potential source of PAHs. This work suggests that the source-sink processes of PAHs at the air-sea interface in the YRE play a crucial role in regional cycling of PAHs.

  9. Importance of the correlation contribution for local hybrid functionals: range separation and self-interaction corrections.

    Science.gov (United States)

    Arbuznikov, Alexei V; Kaupp, Martin

    2012-01-07

    Local hybrid functionals with their position-dependent exact-exchange admixture are a conceptually simple and promising extension of the concept of a hybrid functional. Local hybrids based on a simple mixing of the local spin density approximation (LSDA) with exact exchange have been shown to be successful for thermochemistry, reaction barriers, and a range of other properties. So far, the combination of this generation of local hybrids with an LSDA correlation functional has been found to give the most favorable results for atomization energies, for a range of local mixing functions (LMFs) governing the exact-exchange admixture. Here, we show that the choice of correlation functional to be used with local hybrid exchange crucially influences the parameterization also of the exchange part as well as the overall performance. A novel ansatz for the correlation part of local hybrids is suggested based on (i) range-separation of LSDA correlation into short-range (SR) and long-range (LR) parts, and (ii) partial or full elimination of the one-electron self-correlation from the SR part. It is shown that such modified correlation functionals allow overall larger exact exchange admixture in thermochemically competitive local hybrids than before. This results in improvements for reaction barriers and for other properties crucially influenced by self-interaction errors, as demonstrated by a number of examples. Based on the range-separation approach, a fresh view on the breakdown of the correlation energy into dynamical and non-dynamical parts is suggested.

  10. Helical chirality: a link between local interactions and global topology in DNA.

    Directory of Open Access Journals (Sweden)

    Youri Timsit

    Full Text Available DNA supercoiling plays a major role in many cellular functions. The global DNA conformation is however intimately linked to local DNA-DNA interactions influencing both the physical properties and the biological functions of the supercoiled molecule. Juxtaposition of DNA double helices in ubiquitous crossover arrangements participates in multiple functions such as recombination, gene regulation and DNA packaging. However, little is currently known about how the structure and stability of direct DNA-DNA interactions influence the topological state of DNA. Here, a crystallographic analysis shows that due to the intrinsic helical chirality of DNA, crossovers of opposite handedness exhibit markedly different geometries. While right-handed crossovers are self-fitted by sequence-specific groove-backbone interaction and bridging Mg(2+ sites, left-handed crossovers are juxtaposed by groove-groove interaction. Our previous calculations have shown that the different geometries result in differential stabilisation in solution, in the presence of divalent cations. The present study reveals that the various topological states of the cell are associated with different inter-segmental interactions. While the unstable left-handed crossovers are exclusively formed in negatively supercoiled DNA, stable right-handed crossovers constitute the local signature of an unusual topological state in the cell, such as the positively supercoiled or relaxed DNA. These findings not only provide a simple mechanism for locally sensing the DNA topology but also lead to the prediction that, due to their different tertiary intra-molecular interactions, supercoiled molecules of opposite signs must display markedly different physical properties. Sticky inter-segmental interactions in positively supercoiled or relaxed DNA are expected to greatly slow down the slithering dynamics of DNA. We therefore suggest that the intrinsic helical chirality of DNA may have oriented the early

  11. Intraseasonal variability in the far-east pacific: investigation of the role of air-sea coupling in a regional coupled model

    Energy Technology Data Exchange (ETDEWEB)

    Small, R.J. [Naval Research Laboratory, Jacobs Technology, Stennis Space Center, MS (United States); University of Hawaii, International Pacific Research Center, POST 401, Honolulu, HI (United States); Xie, Shang-Ping [University of Hawaii, International Pacific Research Center, POST 401, Honolulu, HI (United States); University of Hawaii, Department of Meteorology, School of Ocean and Earth Science and Technology, Honolulu, HI (United States); Maloney, Eric D. [Colorado State University, Department of Atmospheric Science, Fort Collins, CO (United States); Szoeke, Simon P. de [Oregon State University, College of Oceanic and Atmospheric Sciences, Corvallis, OR (United States); Miyama, Toru [Frontier Research for Global Change, Yokohama (Japan)

    2011-03-15

    Intraseasonal variability in the eastern Pacific warm pool in summer is studied, using a regional ocean-atmosphere model, a linear baroclinic model (LBM), and satellite observations. The atmospheric component of the model is forced by lateral boundary conditions from reanalysis data. The aim is to quantify the importance to atmospheric deep convection of local air-sea coupling. In particular, the effect of sea surface temperature (SST) anomalies on surface heat fluxes is examined. Intraseasonal (20-90 day) east Pacific warm-pool zonal wind and outgoing longwave radiation (OLR) variability in the regional coupled model are correlated at 0.8 and 0.6 with observations, respectively, significant at the 99% confidence level. The strength of the intraseasonal variability in the coupled model, as measured by the variance of outgoing longwave radiation, is close in magnitude to that observed, but with a maximum located about 10 further west. East Pacific warm pool intraseasonal convection and winds agree in phase with those from observations, suggesting that remote forcing at the boundaries associated with the Madden-Julian oscillation determines the phase of intraseasonal convection in the east Pacific warm pool. When the ocean model component is replaced by weekly reanalysis SST in an atmosphere-only experiment, there is a slight improvement in the location of the highest OLR variance. Further sensitivity experiments with the regional atmosphere-only model in which intraseasonal SST variability is removed indicate that convective variability has only a weak dependence on the SST variability, but a stronger dependence on the climatological mean SST distribution. A scaling analysis confirms that wind speed anomalies give a much larger contribution to the intraseasonal evaporation signal than SST anomalies, in both model and observations. A LBM is used to show that local feedbacks would serve to amplify intraseasonal convection and the large-scale circulation. Further

  12. The effect of coolant quantity on local fuel–coolant interactions in a molten pool

    International Nuclear Information System (INIS)

    Cheng, Songbai; Matsuba, Ken-ichi; Isozaki, Mikio; Kamiyama, Kenji; Suzuki, Tohru; Tobita, Yoshiharu

    2015-01-01

    Highlights: • We investigate local fuel–coolant interactions in a molten pool. • As water volume increases, limited pressurization and mechanical energy observed. • Only a part of water is evaporated and responsible for the pressurization. - Abstract: Studies on local fuel–coolant interactions (FCI) in a molten pool are important for severe accident analyses of sodium-cooled fast reactors (SFRs). Motivated by providing some evidence for understanding this interaction, in this study several experimental tests, with comparatively larger difference in coolant volumes, were conducted by delivering a given quantity of water into a simulated molten fuel pool (formed with a low-melting-point alloy). Interaction characteristics including the pressure-buildup as well as mechanical energy release and its conversion efficiency are evaluated and compared. It is found that as water quantity increases, a limited pressure-buildup and the resultant mechanical energy release are observable. The performed analyses also suggest that only a part of water is probably vaporized during local FCIs and responsible for the pressurization and mechanical energy release, especially for those cases with much larger water volumes

  13. High-precision spatial localization of mouse vocalizations during social interaction.

    Science.gov (United States)

    Heckman, Jesse J; Proville, Rémi; Heckman, Gert J; Azarfar, Alireza; Celikel, Tansu; Englitz, Bernhard

    2017-06-07

    Mice display a wide repertoire of vocalizations that varies with age, sex, and context. Especially during courtship, mice emit ultrasonic vocalizations (USVs) of high complexity, whose detailed structure is poorly understood. As animals of both sexes vocalize, the study of social vocalizations requires attributing single USVs to individuals. The state-of-the-art in sound localization for USVs allows spatial localization at centimeter resolution, however, animals interact at closer ranges, involving tactile, snout-snout exploration. Hence, improved algorithms are required to reliably assign USVs. We develop multiple solutions to USV localization, and derive an analytical solution for arbitrary vertical microphone positions. The algorithms are compared on wideband acoustic noise and single mouse vocalizations, and applied to social interactions with optically tracked mouse positions. A novel, (frequency) envelope weighted generalised cross-correlation outperforms classical cross-correlation techniques. It achieves a median error of ~1.4 mm for noise and ~4-8.5 mm for vocalizations. Using this algorithms in combination with a level criterion, we can improve the assignment for interacting mice. We report significant differences in mean USV properties between CBA mice of different sexes during social interaction. Hence, the improved USV attribution to individuals lays the basis for a deeper understanding of social vocalizations, in particular sequences of USVs.

  14. Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes.

    Directory of Open Access Journals (Sweden)

    Jiawei Luo

    Full Text Available Computational approaches aided by computer science have been used to predict essential proteins and are faster than expensive, time-consuming, laborious experimental approaches. However, the performance of such approaches is still poor, making practical applications of computational approaches difficult in some fields. Hence, the development of more suitable and efficient computing methods is necessary for identification of essential proteins.In this paper, we propose a new method for predicting essential proteins in a protein interaction network, local interaction density combined with protein complexes (LIDC, based on statistical analyses of essential proteins and protein complexes. First, we introduce a new local topological centrality, local interaction density (LID, of the yeast PPI network; second, we discuss a new integration strategy for multiple bioinformatics. The LIDC method was then developed through a combination of LID and protein complex information based on our new integration strategy. The purpose of LIDC is discovery of important features of essential proteins with their neighbors in real protein complexes, thereby improving the efficiency of identification.Experimental results based on three different PPI(protein-protein interaction networks of Saccharomyces cerevisiae and Escherichia coli showed that LIDC outperformed classical topological centrality measures and some recent combinational methods. Moreover, when predicting MIPS datasets, the better improvement of performance obtained by LIDC is over all nine reference methods (i.e., DC, BC, NC, LID, PeC, CoEWC, WDC, ION, and UC.LIDC is more effective for the prediction of essential proteins than other recently developed methods.

  15. Localization of Bogoliubov quasiparticles in interacting Bose gases with correlated disorder

    International Nuclear Information System (INIS)

    Lugan, P.; Sanchez-Palencia, L.

    2011-01-01

    We study the Anderson localization of Bogoliubov quasiparticles (elementary many-body excitations) in a weakly interacting Bose gas of chemical potential μ subjected to a disordered potential V. We introduce a general mapping (valid for weak inhomogeneous potentials in any dimension) of the Bogoliubov-de Gennes equations onto a single-particle Schroedinger-like equation with an effective potential. For disordered potentials, the Schroedinger-like equation accounts for the scattering and localization properties of the Bogoliubov quasiparticles. We derive analytically the localization lengths for correlated disordered potentials in the one-dimensional geometry. Our approach relies on a perturbative expansion in V/μ, which we develop up to third order, and we discuss the impact of the various perturbation orders. Our predictions are shown to be in very good agreement with direct numerical calculations. We identify different localization regimes: For low energy, the effective disordered potential exhibits a strong screening by the quasicondensate density background, and localization is suppressed. For high-energy excitations, the effective disordered potential reduces to the bare disordered potential, and the localization properties of quasiparticles are the same as for free particles. The maximum of localization is found at intermediate energy when the quasicondensate healing length is of the order of the disorder correlation length. Possible extensions of our work to higher dimensions are also discussed.

  16. Air-Sea Interaction Processes in Low and High-Resolution Coupled Climate Model Simulations for the Southeast Pacific

    Science.gov (United States)

    Porto da Silveira, I.; Zuidema, P.; Kirtman, B. P.

    2017-12-01

    The rugged topography of the Andes Cordillera along with strong coastal upwelling, strong sea surface temperatures (SST) gradients and extensive but geometrically-thin stratocumulus decks turns the Southeast Pacific (SEP) into a challenge for numerical modeling. In this study, hindcast simulations using the Community Climate System Model (CCSM4) at two resolutions were analyzed to examine the importance of resolution alone, with the parameterizations otherwise left unchanged. The hindcasts were initialized on January 1 with the real-time oceanic and atmospheric reanalysis (CFSR) from 1982 to 2003, forming a 10-member ensemble. The two resolutions are (0.1o oceanic and 0.5o atmospheric) and (1.125o oceanic and 0.9o atmospheric). The SST error growth in the first six days of integration (fast errors) and those resulted from model drift (saturated errors) are assessed and compared towards evaluating the model processes responsible for the SST error growth. For the high-resolution simulation, SST fast errors are positive (+0.3oC) near the continental borders and negative offshore (-0.1oC). Both are associated with a decrease in cloud cover, a weakening of the prevailing southwesterly winds and a reduction of latent heat flux. The saturated errors possess a similar spatial pattern, but are larger and are more spatially concentrated. This suggests that the processes driving the errors already become established within the first week, in contrast to the low-resolution simulations. These, instead, manifest too-warm SSTs related to too-weak upwelling, driven by too-strong winds and Ekman pumping. Nevertheless, the ocean surface tends to be cooler in the low-resolution simulation than the high-resolution due to a higher cloud cover. Throughout the integration, saturated SST errors become positive and could reach values up to +4oC. These are accompanied by upwelling dumping and a decrease in cloud cover. High and low resolution models presented notable differences in how SST errors variability drove atmospheric changes, especially because the high resolution is sensitive to resurgence regions. This allows the model to resolve cloud heights and establish different radiative feedbacks.

  17. Local cell metrics: a novel method for analysis of cell-cell interactions.

    Science.gov (United States)

    Su, Jing; Zapata, Pedro J; Chen, Chien-Chiang; Meredith, J Carson

    2009-10-23

    The regulation of many cell functions is inherently linked to cell-cell contact interactions. However, effects of contact interactions among adherent cells can be difficult to detect with global summary statistics due to the localized nature and noise inherent to cell-cell interactions. The lack of informatics approaches specific for detecting cell-cell interactions is a limitation in the analysis of large sets of cell image data, including traditional and combinatorial or high-throughput studies. Here we introduce a novel histogram-based data analysis strategy, termed local cell metrics (LCMs), which addresses this shortcoming. The new LCM method is demonstrated via a study of contact inhibition of proliferation of MC3T3-E1 osteoblasts. We describe how LCMs can be used to quantify the local environment of cells and how LCMs are decomposed mathematically into metrics specific to each cell type in a culture, e.g., differently-labelled cells in fluorescence imaging. Using this approach, a quantitative, probabilistic description of the contact inhibition effects in MC3T3-E1 cultures has been achieved. We also show how LCMs are related to the naïve Bayes model. Namely, LCMs are Bayes class-conditional probability functions, suggesting their use for data mining and classification. LCMs are successful in robust detection of cell contact inhibition in situations where conventional global statistics fail to do so. The noise due to the random features of cell behavior was suppressed significantly as a result of the focus on local distances, providing sensitive detection of cell-cell contact effects. The methodology can be extended to any quantifiable feature that can be obtained from imaging of cell cultures or tissue samples, including optical, fluorescent, and confocal microscopy. This approach may prove useful in interpreting culture and histological data in fields where cell-cell interactions play a critical role in determining cell fate, e.g., cancer, developmental

  18. Local Interactions of Hydrometeors by Diffusion in Mixed-Phase Clouds

    Science.gov (United States)

    Baumgartner, Manuel; Spichtinger, Peter

    2017-04-01

    Mixed-phase clouds, containing both ice particles and liquid droplets, are important for the Earth-Atmosphere system. They modulate the radiation budget by a combination of albedo effect and greenhouse effect. In contrast to liquid water clouds, the radiative impact of clouds containing ice particles is still uncertain. Scattering and absorption highly depends in microphysical properties of ice crystals, e.g. size and shape. In addition, most precipitation on Earth forms via the ice phase. Thus, better understanding of ice processes as well as their representation in models is required. A key process for determining shape and size of ice crystals is diffusional growth. Diffusion processes in mixed-phase clouds are highly uncertain; in addition they are usually highly simplified in cloud models, especially in bulk microphysics parameterizations. The direct interaction between cloud droplets and ice particles, due to spatial inhomogeneities, is ignored; the particles can only interact via their environmental conditions. Local effects as supply of supersaturation due to clusters of droplets around ice particles are usually not represented, although they form the physical basis of the Wegener-Bergeron-Findeisen process. We present direct numerical simulations of the interaction of single ice particles and droplets, especially their local competition for the available water vapor. In addition, we show an approach to parameterize local interactions by diffusion. The suggested parameterization uses local steady-state solutions of the diffusion equations for water vapor for an ice particle as well as a droplet. The individual solutions are coupled together to obtain the desired interaction. We show some results of the scheme as implemented in a parcel model.

  19. Global product development interaction between local networks: A study of the Danish food industry

    DEFF Research Database (Denmark)

    Kristensen, Preben Sander

    A study of the Danish foods industry shows that producers of food products largely ignore home marekt demand in their product development activities. They have built up and maintain development of end-user products in interaction with customers in distant sophisticated markets. Concurrently...... view of actors in the global end-user customer market and companies' euclidean view of actors in thelocal business-to-business market. In pr companies combine these two market views by interacting in networks: The global industrial network links various functions which again are each part of a local...... their development of end-user pr through global interaction. It is precisely by not interacting with home market end-user demand, but rather by deriving an industrial home market demand from changing end-user markets that the complex has avoided being insulated....

  20. Symmetry breaking in a localized interacting binary Bose-Einstein condensate in a bichromatic optical lattice

    International Nuclear Information System (INIS)

    Cheng Yongshan; Adhikari, S. K.

    2010-01-01

    By direct numerical simulation of the time-dependent Gross-Pitaevskii equation using the split-step Fourier spectral method, we study different aspects of the localization of a cigar-shaped interacting binary (two-component) Bose-Einstein condensate (BEC) in a one-dimensional bichromatic quasiperiodic optical-lattice potential, as used in a recent experiment on the localization of a BEC [Roati et al., Nature 453, 895 (2008)]. We consider two types of localized states: (i) when both localized components have a maximum of density at the origin x=0, and (ii) when the first component has a maximum of density and the second a minimum of density at x=0. In the noninteracting case, the density profiles are symmetric around x=0. We numerically study the breakdown of this symmetry due to interspecies and intraspecies interactions acting on the two components. Where possible, we have compared the numerical results with a time-dependent variational analysis. We also demonstrate the stability of the localized symmetry-broken BEC states under small perturbation.

  1. Turbulence structure and CO2 transfer at the air-sea interface and turbulent diffusion in thermally-stratified flows

    International Nuclear Information System (INIS)

    Komori, S.

    1996-01-01

    A supercomputer is a nice tool for simulating environmental flows. The Center for Global Environmental Research (CGER) of the National Institute for Environmental Studies purchased a supercomputer SX-3 of CGER about three years ago, and it has been used for various environmental simulations since. Although one of the main purposes for which the supercomputer was used was to simulate global warming with a general circulation model (GCM), our research organization used the supercomputer for more fundamental work to investigate heat and mass transfer mechanisms in environmental flows. Our motivations for this work was the fact that GCMs involve a number of uncertain submodels related to heat and mass transfer in turbulent atmospheric and oceanic flows. It may be easy to write research reports by running GCMs which were developed in western countries, but it is difficult for numerical scientists to do original work with such second-hand GCMs. In this sense, we thought that it would be more original to study the fundamentals of heat and mass transfer mechanisms in environmental flows rather than to run a GCM. Therefore, we tried to numerically investigate turbulence structure and scalar transfer both at the air-sea interface and in thermally stratified flows, neither of which were well modeled by GCMs. We also employed laboratory experiments to clarify the turbulence structure and scalar transfer mechanism, since numerical simulations are not sufficiently powerful to clarify all aspects of turbulence structure and scalar transfer mechanisms. A numerical technique is a promising tool to complement measurements of processes that cannot be clarified by turbulence measurements in environmental flows. It should also be noted that most of the interesting phenomena in environmental flows can be elucidated by laboratory or field measurements but not by numerical simulations alone. Thus, it is of importance to combine laboratory or field measurements with numerical simulations

  2. Correlating Nitrile IR Frequencies to Local Electrostatics Quantifies Noncovalent Interactions of Peptides and Proteins.

    Science.gov (United States)

    Deb, Pranab; Haldar, Tapas; Kashid, Somnath M; Banerjee, Subhrashis; Chakrabarty, Suman; Bagchi, Sayan

    2016-05-05

    Noncovalent interactions, in particular the hydrogen bonds and nonspecific long-range electrostatic interactions are fundamental to biomolecular functions. A molecular understanding of the local electrostatic environment, consistently for both specific (hydrogen-bonding) and nonspecific electrostatic (local polarity) interactions, is essential for a detailed understanding of these processes. Vibrational Stark Effect (VSE) has proven to be an extremely useful method to measure the local electric field using infrared spectroscopy of carbonyl and nitrile based probes. The nitrile chemical group would be an ideal choice because of its absorption in an infrared spectral window transparent to biomolecules, ease of site-specific incorporation into proteins, and common occurrence as a substituent in various drug molecules. However, the inability of VSE to describe the dependence of IR frequency on electric field for hydrogen-bonded nitriles to date has severely limited nitrile's utility to probe the noncovalent interactions. In this work, using infrared spectroscopy and atomistic molecular dynamics simulations, we have reported for the first time a linear correlation between nitrile frequencies and electric fields in a wide range of hydrogen-bonding environments that may bridge the existing gap between VSE and H-bonding interactions. We have demonstrated the robustness of this field-frequency correlation for both aromatic nitriles and sulfur-based nitriles in a wide range of molecules of varying size and compactness, including small molecules in complex solvation environments, an amino acid, disordered peptides, and structured proteins. This correlation, when coupled to VSE, can be used to quantify noncovalent interactions, specific or nonspecific, in a consistent manner.

  3. Theoretical Bases of the Model of Interaction of the Government and Local Government Creation

    Directory of Open Access Journals (Sweden)

    Nikolay I. Churinov

    2015-09-01

    Full Text Available Article is devoted to questions of understanding of a theoretical component: systems of interaction of bodies of different levels of the government. Author researches historical basis of the studied subject by research of foreign and domestic scientific experience in area of the theory of the state and the law. Much attention is paid to the scientific aspect of the question. By empirical approach interpretation of the theory of interaction of public authorities and local government, and also subjective estimated opinion of the author is given.

  4. Surfactant control of air-sea gas exchange from North Sea coastal waters and the Atlantic Meridional Transect

    Science.gov (United States)

    Pereira, R.

    2016-02-01

    suppression and SA is much weaker (r2 = <0.01, n = 22). While organic matter composition and sources may have variable control on air-sea gas exchange between the provinces, the poor relationship observed between SA and k660 suggests that other environmental factors maybe more influential on air-sea gas exchange in the open ocean compared to North Sea coastal waters.

  5. ‘Initiative-Decision’ Typology of New Product Launching (NPL into Local Market: Toward Interaction Mechanism

    Directory of Open Access Journals (Sweden)

    Firmanzah

    2009-12-01

    Full Text Available New product launching (NPL process in subsidiaries is very complex, expensive and risky. This process is marked by the problem of role partition between headquarter and subsidiaries. This research emphasizes the quality of relation between subsidiaries and headquarter which determines the qualities of NPL process into local market. Typology of initiative-decision during NPL process has been documented. Using cluster analysis, three clusters of ‘initiative-decision’ during NPL are found in this research: ‘headquarters domination’, ‘mix-initiative’ and ‘interaction’. Using ANOVA analysis, this research found that interaction between subsidiary and headquarter managers positively increases the effectiveness of marketing-strategy during NPL process. This finding suggests that interaction mechanism between subsidiary and headquarter is the best solution to launch a new product to the local market.

  6. Non-fragile consensus algorithms for a network of diffusion PDEs with boundary local interaction

    Science.gov (United States)

    Xiong, Jun; Li, Junmin

    2017-07-01

    In this study, non-fragile consensus algorithm is proposed to solve the average consensus problem of a network of diffusion PDEs, modelled by boundary controlled heat equations. The problem deals with the case where the Neumann-type boundary controllers are corrupted by additive persistent disturbances. To achieve consensus between agents, a linear local interaction rule addressing this requirement is given. The proposed local interaction rules are analysed by applying a Lyapunov-based approach. The multiplicative and additive non-fragile feedback control algorithms are designed and sufficient conditions for the consensus of the multi-agent systems are presented in terms of linear matrix inequalities, respectively. Simulation results are presented to support the effectiveness of the proposed algorithms.

  7. Understanding the nanoscale local buckling behavior of vertically aligned MWCNT arrays with van der Waals interactions

    Science.gov (United States)

    Li, Yupeng; Kim, Hyung-Ick; Wei, Bingqing; Kang, Junmo; Choi, Jae-Boong; Nam, Jae-Do; Suhr, Jonghwan

    2015-08-01

    The local buckling behavior of vertically aligned carbon nanotubes (VACNTs) has been investigated and interpreted in the view of a collective nanotube response by taking van der Waals interactions into account. To the best of our knowledge, this is the first report on the case of collective VACNT behavior regarding van der Waals force among nanotubes as a lateral support effect during the buckling process. The local buckling propagation and development of VACNTs were experimentally observed and theoretically analyzed by employing finite element modeling with lateral support from van der Waals interactions among nanotubes. Both experimental and theoretical analyses show that VACNTs buckled in the bottom region with many short waves and almost identical wavelengths, indicating a high mode buckling. Furthermore, the propagation and development mechanism of buckling waves follow the wave damping effect.The local buckling behavior of vertically aligned carbon nanotubes (VACNTs) has been investigated and interpreted in the view of a collective nanotube response by taking van der Waals interactions into account. To the best of our knowledge, this is the first report on the case of collective VACNT behavior regarding van der Waals force among nanotubes as a lateral support effect during the buckling process. The local buckling propagation and development of VACNTs were experimentally observed and theoretically analyzed by employing finite element modeling with lateral support from van der Waals interactions among nanotubes. Both experimental and theoretical analyses show that VACNTs buckled in the bottom region with many short waves and almost identical wavelengths, indicating a high mode buckling. Furthermore, the propagation and development mechanism of buckling waves follow the wave damping effect. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr03581c

  8. Local Interaction Simulation Approach for Fault Detection in Medical Ultrasonic Transducers

    Directory of Open Access Journals (Sweden)

    Z. Hashemiyan

    2015-01-01

    Full Text Available A new approach is proposed for modelling medical ultrasonic transducers operating in air. The method is based on finite elements and the local interaction simulation approach. The latter leads to significant reductions of computational costs. Transmission and reception properties of the transducer are analysed using in-air reverberation patterns. The proposed approach can help to provide earlier detection of transducer faults and their identification, reducing the risk of misdiagnosis due to poor image quality.

  9. Local free energies for the coarse-graining of adsorption phenomena: The interacting pair approximation

    Science.gov (United States)

    Pazzona, Federico G.; Pireddu, Giovanni; Gabrieli, Andrea; Pintus, Alberto M.; Demontis, Pierfranco

    2018-05-01

    We investigate the coarse-graining of host-guest systems under the perspective of the local distribution of pore occupancies, along with the physical meaning and actual computability of the coarse-interaction terms. We show that the widely accepted approach, in which the contributions to the free energy given by the molecules located in two neighboring pores are estimated through Monte Carlo simulations where the two pores are kept separated from the rest of the system, leads to inaccurate results at high sorbate densities. In the coarse-graining strategy that we propose, which is based on the Bethe-Peierls approximation, density-independent interaction terms are instead computed according to local effective potentials that take into account the correlations between the pore pair and its surroundings by means of mean-field correction terms without the need for simulating the pore pair separately. Use of the interaction parameters obtained this way allows the coarse-grained system to reproduce more closely the equilibrium properties of the original one. Results are shown for lattice-gases where the local free energy can be computed exactly and for a system of Lennard-Jones particles under the effect of a static confining field.

  10. Local structure theory: calculation on hexagonal arrays, and interaction of rule and lattice

    International Nuclear Information System (INIS)

    Gutowitz, H.A.; Victor, J.D.

    1989-01-01

    Local structure theory calculations are applied to the study of cellular automata on the two-dimensional hexagonal lattice. A particular hexagonal lattice rule denoted (3422) is considered in detail. This rule has many features in common with Conway's Life. The local structure theory captures many of the statistical properties of this rule; this supports hypotheses raised by a study of Life itself. As in Life, the state of a cell under (3422) depends only on the state of the cell itself and the sum of states in its neighborhood at the previous time step. This property implies that evolution rules which operate in the same way can be studied on different lattices. The differences between the behavior of these rules on different lattices are dramatic. The mean field theory cannot reflect these differences. However, a generalization of the mean field theory, the local structure theory, does account for the rule-lattice interaction

  11. Solitons in quasi-one-dimensional Bose-Einstein condensates with competing dipolar and local interactions

    International Nuclear Information System (INIS)

    Cuevas, J.; Malomed, Boris A.; Kevrekidis, P. G.; Frantzeskakis, D. J.

    2009-01-01

    We study families of one-dimensional matter-wave bright solitons supported by the competition of contact and dipole-dipole (DD) interactions of opposite signs. Soliton families are found, and their stability is investigated in the free space and in the presence of an optical lattice (OL). Free-space solitons may exist with an arbitrarily weak local attraction if the strength of the DD repulsion is fixed. In the case of the DD attraction, solitons do not exist beyond a maximum value of the local-repulsion strength. In the system which includes the OL, a stability region for subfundamental solitons is found in the second finite band gap. For the existence of gap solitons (GSs) under the attractive DD interaction, the contact repulsion must be strong enough. In the opposite case of the DD repulsion, GSs exist if the contact attraction is not too strong. Collisions between solitons in the free space are studied too. In the case of the local attraction, they merge or pass through each other at small and large velocities, respectively. In the presence of the local repulsion, slowly moving solitons bounce from each other.

  12. Localization enhanced and degraded topological order in interacting p -wave wires

    Science.gov (United States)

    Kells, G.; Moran, N.; Meidan, D.

    2018-02-01

    We numerically study the effect of disorder on the stability of the many-body zero mode in a Kitaev chain with local interactions. Our numerical procedure allows us to resolve the position space and multiparticle structure of the zero modes, as well as providing estimates for the mean energy splitting between pairs of states of opposite fermion parity, over the full many-body spectrum. We find that the parameter space of a clean system can be divided into regions where interaction induced decay transitions are suppressed (region I) and where they are not (region II). In region I we observe that disorder has an adverse effect on the zero mode, which extends further into the bulk and is accompanied by an increased energy splitting between pairs of states of opposite parity. Conversely region II sees a more intricate effect of disorder, showing an enhancement of localization at the system's end accompanied by a reduction in the mean pairwise energy splitting. We discuss our results in the context of the many-body localization (MBL). We show that while the mechanism that drives the MBL transition also contributes to the fock-space localization of the many-body zero modes, measures that characterize the degree of MBL do not necessarily correlate with an enhancement of the zero mode or an improved stability of the topological region.

  13. Properties of Nuclei up to A =16 using Local Chiral Interactions

    Science.gov (United States)

    Lonardoni, D.; Carlson, J.; Gandolfi, S.; Lynn, J. E.; Schmidt, K. E.; Schwenk, A.; Wang, X. B.

    2018-03-01

    We report accurate quantum Monte Carlo calculations of nuclei up to A =16 based on local chiral two- and three-nucleon interactions up to next-to-next-to-leading order. We examine the theoretical uncertainties associated with the chiral expansion and the cutoff in the theory, as well as the associated operator choices in the three-nucleon interactions. While in light nuclei the cutoff variation and systematic uncertainties are rather small, in O 16 these can be significant for large coordinate-space cutoffs. Overall, we show that chiral interactions constructed to reproduce properties of very light systems and nucleon-nucleon scattering give an excellent description of binding energies, charge radii, and form factors for all these nuclei, including open-shell systems in A =6 and 12.

  14. Effect of wind waves on air-sea gas exchange: proposal of an overall CO2 transfer velocity formula as a function of breaking-wave parameter

    International Nuclear Information System (INIS)

    Zhao, D.; Suzuki, Y.; Komori, S.

    2003-01-01

    A new formula for gas transfer velocity as a function of the breaking-wave parameter is proposed based on correlating gas transfer with whitecap coverage. The new formula for gas transfer across an air-sea interface depends not only on wind speed but also on wind-wave state. At the same wind speed, a higher gas transfer velocity will be obtained for a more developed wind-sea, which is represented by a smaller spectral peak frequency of wind waves. We suggest that the large uncertainties in the traditional relationship of gas transfer velocity with wind speed be ascribed to the neglect of the effect of wind waves. The breaking-wave parameter can be regarded as a Reynolds number that characterizes the intensity of turbulence associated with wind waves in the downward-bursting boundary layer (DBBL). DBBL provides an effective way to exchange gas across the air-sea interface, which might be related to the surface renewal

  15. Tiny changes in local order identify the cluster formation threshold in model fluids with competing interactions.

    Science.gov (United States)

    Bomont, Jean-Marc; Costa, Dino; Bretonnet, Jean-Louis

    2017-06-14

    We use Monte Carlo simulations to carry out a thorough analysis of structural correlations arising in a relatively dense fluid of rigid spherical particles with prototype competing interactions (short-range attractive and long-range repulsive two-Yukawa model). As the attraction strength increases, we show that the local density of the fluid displays a tiny reversal of trend within specific ranges of interparticle distances, whereupon it decreases first and increases afterwards, passing through a local minimum. Particles involved in this trend display, accordingly, distinct behaviours: for a sufficiently weak attraction, they seem to contribute to the long-wave oscillations typically heralding the formation of patterns in such fluids; for a stronger attraction, after the reversal of the local density has occurred, they form an outer shell of neighbours stabilizing the existing aggregation seeds. Following the increment of attraction, precisely in correspondence of the local density reversal, the local peak developed in the structure factor at small wavevectors markedly rises, signalling-in agreement with recent structural criteria-the onset of a clustered state. A detailed cluster analysis of microscopic configurations fully validates this picture.

  16. Using Interactive Case Studies to Support Students Understandings of Local Environmental Problems

    Directory of Open Access Journals (Sweden)

    Z. Kostova

    2012-12-01

    Full Text Available The article presents designed and refined an interactive-enhanced curriculum module for 9th grade secondary school students in Bulgaria, based on environmental case studies. In the module activities students from two schools studied the local environments, performed observations and experiments, collected and analyzed data, prepared and presented posters and role plays, made connections between scientific processes and socio-scientific issues and drew conclusions about the global effects of locally created environmental problems. The students’ critical observations of the quality of their surroundings helped them to make a list of local environmental problems, to apply interactive strategies in studying them and to propose rational scientifically based solutions. In the study the attention was directed to the advantages and disadvantages of poster presentations and role playing and to the specific learning difficulties that students had to overcome. Students’ achievements from the two experimental schools were assessed independently in order to give us insights into the details of learning using different interactive strategies and into the acquired performance skills, dependant on students’ interests and personal abilities. The three versions of the module (traditional, dominated by teacher presentation; poster preparation and presentation in which students imitate scientific team research; and role playing in which students not only study the local environmental problems but assume social roles to cope with them demonstrate three levels of students learning independence. Specific assessment tests and check lists were developed for analyzing, evaluating and comparing students’ achievements in each version of the module and in each school. Ecological knowledge assessment tests were based on Bloom’s taxonomy of educational objectives. Poster and role playing preparations and presentations were assessed by specific criteria, shown in the

  17. CCHCR1 interacts with EDC4, suggesting its localization in P-bodies

    Energy Technology Data Exchange (ETDEWEB)

    Ling, Y.H.; Wong, C.C. [School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong (China); Li, K.W. [Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Neuroscience Campus Amsterdam, VU University, 1081 HV Amsterdam (Netherlands); Chan, K.M. [School of Life Sciences, Faculty of Science, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong (China); Boukamp, P. [Division of Genetics of Skin Carcinogenesis, A110 German Cancer Research Center, Im Neuenheimer Feld 280, D-69120 Heidelberg (Germany); Liu, W.K., E-mail: ken-liu@cuhk.edu.hk [School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong (China)

    2014-09-10

    Coiled‐coil alpha‐helical rod protein 1 (CCHCR1) is suggested as a candidate biomarker for psoriasis for more than a decade but its function remains poorly understood because of the inconsistent findings in the literature. CCHCR1 protein is suggested to be localized in the cytoplasm, nucleus, mitochondria, or centrosome and to regulate various cellular functions, including steroidogenesis, proliferation, differentiation, and cytoskeleton organization. In this study, we attempted to find a consensus between these findings by identifying the interaction partners of CCHCR1 using co-immunoprecipiation with a stable cell line expressing EGFP-tagged CCHCR1. Out of more than 100 co-immunoprecipitants identified by liquid chromatography-tandem mass spectrometry (LC-MS/MS), the enhancer of mRNA-decapping protein 4 (EDC4), which is a processing body (P-body) component, was particularly found to be the major interacting partner of CCHCR1. Confocal imaging confirmed the localization of CCHCR1 in P-bodies and its N-terminus is required for this subcellular localization, suggesting that CCHCR1 is a novel P-body component. As P-bodies are the site for mRNA metabolism, our findings provide a molecular basis for the function of CCHCR1, any disruption of which may affect the transcriptome of the cell, and causing abnormal cell functions. - Highlights: • We identified CCHCR1 as a novel P-body component. • We identified EDC4 as the major interacting partner of CCHCR1. • N-terminus of CCHCR1 protein is required for its P-bodies localization.

  18. Air-sea Exchange of Polycyclic Aromatic Hydrocarbons (PAHs), Polychlorinated Biphenyls (PCBs), Organochlorine Pesticides (OCPs) and Polybrominated Diphenyl Ethers (PBDEs) in the Mediterranean Sea

    Science.gov (United States)

    Lammel, G. P.; Heil, A.; Kukucka, P.; Meixner, F. X.; Mulder, M. D.; Prybilova, P.; Prokes, R.; Rusina, T. S.; Song, G. Z.; Vrana, B.

    2015-12-01

    The marine atmospheric environment is a receptor for persistent organic pollutants (POPs) which are advected from sources on land, primary, such as biomass burning by-products (PAHs, dioxins), and secondary, such as volatilization from contaminated soils (PCBs, pesticides). Primary sources do not exist in the marine environment, except for PAHs (ship engines) but following previous atmospheric deposition, the sea surface may turn to a secondary source by reversal of diffusive air-sea mass exchange. No monitoring is in place. We studied the vertical fluxes of a wide range of primary and secondary emitted POPs based on measurements in air and surface seawater at a remote coastal site in the eastern Mediterranean (2012). To this end, silicon rubbers were used as passive water samplers, vertical concentration gradients were determined in air and fluxes were quantified based on Eddy covariance. Diffusive air-sea exchange fluxes of hexachlorocyclohexanes (HCHs) and semivolatile PAHs were found close to phase equilibrium, except one PAH, retene, a wood burning tracer, was found seasonally net-volatilisational. Some PCBs, p,p'-DDE, penta- and hexachlorobenzene (PeCB, HCB) were mostly net-depositional, while PBDEs were net-volatilizational. Fluxes determined at a a remote coastal site ranged -33 - +2.4 µg m-2 d-1 for PAHs and -4.0 - +0.3 µg m-2 d-1for halogenated compounds ( 0 means net-volatilization). It is concluded that nowadays in open seas more pollutants are undergoing reversal of the direction of air-sea exchange. Recgional fire activity records in combination with box model simulations suggest that deposition of retene during summer is followed by a reversal of air-sea exchange. The seawater surface as secondary source of pollution should be assessed based on flux measurements across seasons and over longer time periods.

  19. Air-sea dimethylsulfide (DMS) gas transfer in the North Atlantic: evidence for limited interfacial gas exchange at high wind speed

    Science.gov (United States)

    Bell, T. G.; De Bruyn, W.; Miller, S. D.; Ward, B.; Christensen, K.; Saltzman, E. S.

    2013-11-01

    Shipboard measurements of eddy covariance dimethylsulfide (DMS) air-sea fluxes and seawater concentration were carried out in the North Atlantic bloom region in June/July 2011. Gas transfer coefficients (k660) show a linear dependence on mean horizontal wind speed at wind speeds up to 11 m s-1. At higher wind speeds the relationship between k660 and wind speed weakens. At high winds, measured DMS fluxes were lower than predicted based on the linear relationship between wind speed and interfacial stress extrapolated from low to intermediate wind speeds. In contrast, the transfer coefficient for sensible heat did not exhibit this effect. The apparent suppression of air-sea gas flux at higher wind speeds appears to be related to sea state, as determined from shipboard wave measurements. These observations are consistent with the idea that long waves suppress near-surface water-side turbulence, and decrease interfacial gas transfer. This effect may be more easily observed for DMS than for less soluble gases, such as CO2, because the air-sea exchange of DMS is controlled by interfacial rather than bubble-mediated gas transfer under high wind speed conditions.

  20. Measure solutions for non-local interaction PDEs with two species

    Energy Technology Data Exchange (ETDEWEB)

    Francesco, Marco Di [Department of Mathematical and Statistical Sciences, University of Bath, Claverton Down, Bath, BA2 7AY (United Kingdom); Fagioli, Simone [DISIM—Department of Information Engineering, Computer Science and Mathematics, University of L' Aquila, Via Vetoio 1 (Coppito) 67100 L' Aquila (AQ) (Italy)

    2013-10-01

    This paper presents a systematic existence and uniqueness theory of weak measure solutions for systems of non-local interaction PDEs with two species, which are the PDE counterpart of systems of deterministic interacting particles with two species. The main motivations behind those models arise in cell biology, pedestrian movements, and opinion formation. In case of symmetrizable systems (i.e. with cross-interaction potentials one multiple of the other), we provide a complete existence and uniqueness theory within (a suitable generalization of) the Wasserstein gradient flow theory in Ambrosio et al (2008 Gradient Flows in Metric Spaces and in the Space of Probability Measures (Lectures in Mathematics ETH Zürich) 2nd edn (Basel: Birkhäuser)) and Carrillo et al (2011 Duke Math. J. 156 229–71), which allows the consideration of interaction potentials with a discontinuous gradient at the origin. In the general case of non-symmetrizable systems, we provide an existence result for measure solutions which uses a semi-implicit version of the Jordan–Kinderlehrer–Otto (JKO) scheme (Jordan et al 1998 SIAM J. Math. Anal. 29 1–17), which holds in a reasonable non-smooth setting for the interaction potentials. Uniqueness in the non-symmetrizable case is proven for C{sup 2} potentials using a variant of the method of characteristics. (paper)

  1. Measure solutions for non-local interaction PDEs with two species

    International Nuclear Information System (INIS)

    Francesco, Marco Di; Fagioli, Simone

    2013-01-01

    This paper presents a systematic existence and uniqueness theory of weak measure solutions for systems of non-local interaction PDEs with two species, which are the PDE counterpart of systems of deterministic interacting particles with two species. The main motivations behind those models arise in cell biology, pedestrian movements, and opinion formation. In case of symmetrizable systems (i.e. with cross-interaction potentials one multiple of the other), we provide a complete existence and uniqueness theory within (a suitable generalization of) the Wasserstein gradient flow theory in Ambrosio et al (2008 Gradient Flows in Metric Spaces and in the Space of Probability Measures (Lectures in Mathematics ETH Zürich) 2nd edn (Basel: Birkhäuser)) and Carrillo et al (2011 Duke Math. J. 156 229–71), which allows the consideration of interaction potentials with a discontinuous gradient at the origin. In the general case of non-symmetrizable systems, we provide an existence result for measure solutions which uses a semi-implicit version of the Jordan–Kinderlehrer–Otto (JKO) scheme (Jordan et al 1998 SIAM J. Math. Anal. 29 1–17), which holds in a reasonable non-smooth setting for the interaction potentials. Uniqueness in the non-symmetrizable case is proven for C 2 potentials using a variant of the method of characteristics. (paper)

  2. Local cell metrics: a novel method for analysis of cell-cell interactions

    Directory of Open Access Journals (Sweden)

    Chen Chien-Chiang

    2009-10-01

    Full Text Available Abstract Background The regulation of many cell functions is inherently linked to cell-cell contact interactions. However, effects of contact interactions among adherent cells can be difficult to detect with global summary statistics due to the localized nature and noise inherent to cell-cell interactions. The lack of informatics approaches specific for detecting cell-cell interactions is a limitation in the analysis of large sets of cell image data, including traditional and combinatorial or high-throughput studies. Here we introduce a novel histogram-based data analysis strategy, termed local cell metrics (LCMs, which addresses this shortcoming. Results The new LCM method is demonstrated via a study of contact inhibition of proliferation of MC3T3-E1 osteoblasts. We describe how LCMs can be used to quantify the local environment of cells and how LCMs are decomposed mathematically into metrics specific to each cell type in a culture, e.g., differently-labelled cells in fluorescence imaging. Using this approach, a quantitative, probabilistic description of the contact inhibition effects in MC3T3-E1 cultures has been achieved. We also show how LCMs are related to the naïve Bayes model. Namely, LCMs are Bayes class-conditional probability functions, suggesting their use for data mining and classification. Conclusion LCMs are successful in robust detection of cell contact inhibition in situations where conventional global statistics fail to do so. The noise due to the random features of cell behavior was suppressed significantly as a result of the focus on local distances, providing sensitive detection of cell-cell contact effects. The methodology can be extended to any quantifiable feature that can be obtained from imaging of cell cultures or tissue samples, including optical, fluorescent, and confocal microscopy. This approach may prove useful in interpreting culture and histological data in fields where cell-cell interactions play a critical

  3. Communicative Interaction among Local Editorial Staff Members: Current Situation and the Ways of its Improving

    Directory of Open Access Journals (Sweden)

    Mariya V. Korotitskaya

    2017-06-01

    Full Text Available Communication between management and employees is very important in organizations. However, communication problems might be more felt in any media organization as a whole and in the local media staff in particular. It’s obvious that news workers have everyday communicative interaction with different newsmakers. The article deals with the study and analysis of the communicative interaction between the local editorial creative staff members. Internal and external organizational understanding data are considered. It is determined that the level of organizational communication development influences the local editorial success and employees’ performance. Mutual understanding as the basic criterion of effective communication has several forms. The subject of our study is organizational understanding, that is, a special type of editorial staff relationship which is limited by the boundaries of the organization and is essential for its successful functioning and development. The analysis of empirical data allowed to identify the main problematic aspects and to work out the recommendations for vertical and horizontal communication development.

  4. Large-eddy simulation of wind turbine wake interactions on locally refined Cartesian grids

    Science.gov (United States)

    Angelidis, Dionysios; Sotiropoulos, Fotis

    2014-11-01

    Performing high-fidelity numerical simulations of turbulent flow in wind farms remains a challenging issue mainly because of the large computational resources required to accurately simulate the turbine wakes and turbine/turbine interactions. The discretization of the governing equations on structured grids for mesoscale calculations may not be the most efficient approach for resolving the large disparity of spatial scales. A 3D Cartesian grid refinement method enabling the efficient coupling of the Actuator Line Model (ALM) with locally refined unstructured Cartesian grids adapted to accurately resolve tip vortices and multi-turbine interactions, is presented. Second order schemes are employed for the discretization of the incompressible Navier-Stokes equations in a hybrid staggered/non-staggered formulation coupled with a fractional step method that ensures the satisfaction of local mass conservation to machine zero. The current approach enables multi-resolution LES of turbulent flow in multi-turbine wind farms. The numerical simulations are in good agreement with experimental measurements and are able to resolve the rich dynamics of turbine wakes on grids containing only a small fraction of the grid nodes that would be required in simulations without local mesh refinement. This material is based upon work supported by the Department of Energy under Award Number DE-EE0005482 and the National Science Foundation under Award number NSF PFI:BIC 1318201.

  5. Dirac bi-spinor entanglement under local noise and its simulation by Jaynes-Cummings interactions

    Science.gov (United States)

    Bittencourt, Victor A. S. V.; Bernardini, Alex E.

    2017-08-01

    A description of the effects of the local noise on the quantum entanglement constraining the internal degrees of freedom of Dirac bi-spinor structures driven by arbitrary Poincaré invariant potentials is proposed. Given that the Dirac equation dynamics including external potentials can be simulated by a suitable four level trapped ion setup, quantum entanglement of two-qubit ionic states with quantum numbers related to the total angular momentum and to its projection onto the direction of the external magnetic field (used for lift the ions degeneracy), are recovered by means of a suitable ansatz. This formalism allows the inclusion of noise effects, which leads to disentanglement in the four level trapped ion quantum system. Our results indicate the role of interactions in bi-spinor entanglement, as well as the description of disentanglement in ionic states under local noises. For a state prepared initially in one of the ionic levels, local noise induces entanglement sudden death followed by sudden revivals driven by the noiseless dynamics of the state. Residual quantum correlations are observed in the intervals where such state is separable. Schrödinger cat and Werner states partially loose their initial entanglement content due to the interaction with the noisy environment but presenting entanglement oscillations without sudden death. Because Dirac equation describes low energy excitations of mono layer and bi-layer graphene, the formalism can also be applied to compute, for instance, electron-hole or electron/electron entanglement in various circumstances.

  6. Impact of air-sea drag coefficient for latent heat flux on large scale climate in coupled and atmosphere stand-alone simulations

    Science.gov (United States)

    Torres, Olivier; Braconnot, Pascale; Marti, Olivier; Gential, Luc

    2018-05-01

    The turbulent fluxes across the ocean/atmosphere interface represent one of the principal driving forces of the global atmospheric and oceanic circulation. Despite decades of effort and improvements, representation of these fluxes still presents a challenge due to the small-scale acting turbulent processes compared to the resolved scales of the models. Beyond this subgrid parameterization issue, a comprehensive understanding of the impact of air-sea interactions on the climate system is still lacking. In this paper we investigates the large-scale impacts of the transfer coefficient used to compute turbulent heat fluxes with the IPSL-CM4 climate model in which the surface bulk formula is modified. Analyzing both atmosphere and coupled ocean-atmosphere general circulation model (AGCM, OAGCM) simulations allows us to study the direct effect and the mechanisms of adjustment to this modification. We focus on the representation of latent heat flux in the tropics. We show that the heat transfer coefficients are highly similar for a given parameterization between AGCM and OAGCM simulations. Although the same areas are impacted in both kind of simulations, the differences in surface heat fluxes are substantial. A regional modification of heat transfer coefficient has more impact than uniform modification in AGCM simulations while in OAGCM simulations, the opposite is observed. By studying the global energetics and the atmospheric circulation response to the modification, we highlight the role of the ocean in dampening a large part of the disturbance. Modification of the heat exchange coefficient modifies the way the coupled system works due to the link between atmospheric circulation and SST, and the different feedbacks between ocean and atmosphere. The adjustment that takes place implies a balance of net incoming solar radiation that is the same in all simulations. As there is no change in model physics other than drag coefficient, we obtain similar latent heat flux

  7. The Fanconi anemia proteins FANCD2 and FANCJ interact and regulate each other's chromatin localization.

    Science.gov (United States)

    Chen, Xiaoyong; Wilson, James B; McChesney, Patricia; Williams, Stacy A; Kwon, Youngho; Longerich, Simonne; Marriott, Andrew S; Sung, Patrick; Jones, Nigel J; Kupfer, Gary M

    2014-09-12

    Fanconi anemia is a genetic disease resulting in bone marrow failure, birth defects, and cancer that is thought to encompass a defect in maintenance of genomic stability. Mutations in 16 genes (FANCA, B, C, D1, D2, E, F, G, I, J, L, M, N, O, P, and Q) have been identified in patients, with the Fanconi anemia subtype J (FA-J) resulting from homozygous mutations in the FANCJ gene. Here, we describe the direct interaction of FANCD2 with FANCJ. We demonstrate the interaction of FANCD2 and FANCJ in vivo and in vitro by immunoprecipitation in crude cell lysates and from fractions after gel filtration and with baculovirally expressed proteins. Mutation of the monoubiquitination site of FANCD2 (K561R) preserves interaction with FANCJ constitutively in a manner that impedes proper chromatin localization of FANCJ. FANCJ is necessary for FANCD2 chromatin loading and focus formation in response to mitomycin C treatment. Our results suggest not only that FANCD2 regulates FANCJ chromatin localization but also that FANCJ is necessary for efficient loading of FANCD2 onto chromatin following DNA damage caused by mitomycin C treatment. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

  8. Interaction of nucleosome assembly proteins abolishes nuclear localization of DGKζ by attenuating its association with importins

    International Nuclear Information System (INIS)

    Okada, Masashi; Hozumi, Yasukazu; Ichimura, Tohru; Tanaka, Toshiaki; Hasegawa, Hiroshi; Yamamoto, Masakazu; Takahashi, Nobuya; Iseki, Ken; Yagisawa, Hitoshi; Shinkawa, Takashi; Isobe, Toshiaki; Goto, Kaoru

    2011-01-01

    Diacylglycerol kinase (DGK) is involved in the regulation of lipid-mediated signal transduction through the metabolism of a second messenger diacylglycerol. Of the DGK family, DGKζ, which contains a nuclear localization signal, localizes mainly to the nucleus but translocates to the cytoplasm under pathological conditions. However, the detailed mechanism of translocation and its functional significance remain unclear. To elucidate these issues, we used a proteomic approach to search for protein targets that interact with DGKζ. Results show that nucleosome assembly protein (NAP) 1-like 1 (NAP1L1) and NAP1-like 4 (NAP1L4) are identified as novel DGKζ binding partners. NAP1Ls constitutively shuttle between the nucleus and the cytoplasm in transfected HEK293 cells. The molecular interaction of DGKζ and NAP1Ls prohibits nuclear import of DGKζ because binding of NAP1Ls to DGKζ blocks import carrier proteins, Qip1 and NPI1, to interact with DGKζ, leading to cytoplasmic tethering of DGKζ. In addition, overexpression of NAP1Ls exerts a protective effect against doxorubicin-induced cytotoxicity. These findings suggest that NAP1Ls are involved in a novel molecular basis for the regulation of nucleocytoplasmic shuttling of DGKζ and provide a clue to examine functional significance of its translocation under pathological conditions.

  9. Effects of Sea-Surface Waves and Ocean Spray on Air-Sea Momentum Fluxes

    Science.gov (United States)

    Zhang, Ting; Song, Jinbao

    2018-04-01

    The effects of sea-surface waves and ocean spray on the marine atmospheric boundary layer (MABL) at different wind speeds and wave ages were investigated. An MABL model was developed that introduces a wave-induced component and spray force to the total surface stress. The theoretical model solution was determined assuming the eddy viscosity coefficient varied linearly with height above the sea surface. The wave-induced component was evaluated using a directional wave spectrum and growth rate. Spray force was described using interactions between ocean-spray droplets and wind-velocity shear. Wind profiles and sea-surface drag coefficients were calculated for low to high wind speeds for wind-generated sea at different wave ages to examine surface-wave and ocean-spray effects on MABL momentum distribution. The theoretical solutions were compared with model solutions neglecting wave-induced stress and/or spray stress. Surface waves strongly affected near-surface wind profiles and sea-surface drag coefficients at low to moderate wind speeds. Drag coefficients and near-surface wind speeds were lower for young than for old waves. At high wind speeds, ocean-spray droplets produced by wind-tearing breaking-wave crests affected the MABL strongly in comparison with surface waves, implying that wave age affects the MABL only negligibly. Low drag coefficients at high wind caused by ocean-spray production increased turbulent stress in the sea-spray generation layer, accelerating near-sea-surface wind. Comparing the analytical drag coefficient values with laboratory measurements and field observations indicated that surface waves and ocean spray significantly affect the MABL at different wind speeds and wave ages.

  10. Interactions and Localization of Escherichia coli Error-Prone DNA Polymerase IV after DNA Damage.

    Science.gov (United States)

    Mallik, Sarita; Popodi, Ellen M; Hanson, Andrew J; Foster, Patricia L

    2015-09-01

    Escherichia coli's DNA polymerase IV (Pol IV/DinB), a member of the Y family of error-prone polymerases, is induced during the SOS response to DNA damage and is responsible for translesion bypass and adaptive (stress-induced) mutation. In this study, the localization of Pol IV after DNA damage was followed using fluorescent fusions. After exposure of E. coli to DNA-damaging agents, fluorescently tagged Pol IV localized to the nucleoid as foci. Stepwise photobleaching indicated ∼60% of the foci consisted of three Pol IV molecules, while ∼40% consisted of six Pol IV molecules. Fluorescently tagged Rep, a replication accessory DNA helicase, was recruited to the Pol IV foci after DNA damage, suggesting that the in vitro interaction between Rep and Pol IV reported previously also occurs in vivo. Fluorescently tagged RecA also formed foci after DNA damage, and Pol IV localized to them. To investigate if Pol IV localizes to double-strand breaks (DSBs), an I-SceI endonuclease-mediated DSB was introduced close to a fluorescently labeled LacO array on the chromosome. After DSB induction, Pol IV localized to the DSB site in ∼70% of SOS-induced cells. RecA also formed foci at the DSB sites, and Pol IV localized to the RecA foci. These results suggest that Pol IV interacts with RecA in vivo and is recruited to sites of DSBs to aid in the restoration of DNA replication. DNA polymerase IV (Pol IV/DinB) is an error-prone DNA polymerase capable of bypassing DNA lesions and aiding in the restart of stalled replication forks. In this work, we demonstrate in vivo localization of fluorescently tagged Pol IV to the nucleoid after DNA damage and to DNA double-strand breaks. We show colocalization of Pol IV with two proteins: Rep DNA helicase, which participates in replication, and RecA, which catalyzes recombinational repair of stalled replication forks. Time course experiments suggest that Pol IV recruits Rep and that RecA recruits Pol IV. These findings provide in vivo evidence

  11. The role of local interaction mechanics in fiber optic smart structures

    Science.gov (United States)

    Sirkis, J. S.; Dasgupta, A.

    1993-04-01

    The concept of using 'smart' composite materials/structures with built-in self-diagnostic capabilities for health monitoring involves embedding discrete and/or distributed sensory networks in the host composite material, along with a central and/or distributed artificial intelligence capability for signal processing, data collection, interpretation and diagnostic evaluations. This article concentrates on the sensory functions in 'smart' structure applications and concentrates in particular on optical fiber sensors. Specifically, we present an overview of recent research dealing with the basic mechanics of local interactions between the embedded optical fiber sensors and the surrounding host composite. The term 'local' is defined by length scales on the order of several optical fiber diameters. We examine some generic issues, such as the 'calibration' and 'obtrusivity' of the sensor, and the inherent damage caused by the sensor inclusions to the surrounding host and vice-versa under internal and/or external applied loads. Analytical, numerical and experimental results are presented regarding the influence of local strain concentrations caused by the sensory inclusions on sensor and host performance. The important issues examined are the local mechanistic effects of optical fiber coatings on the behavior of the sensor and the host, and mechanical survivability of optical fibers experiencing quasi-static and time-varying thermomechanical loading.

  12. Gender-specific hierarchy in nuage localization of PIWI-interacting RNA factors in Drosophila

    Directory of Open Access Journals (Sweden)

    Mikiko C Siomi

    2011-08-01

    Full Text Available PIWI-interacting RNAs (piRNAs are germline-specific small non-coding RNAs that form piRNA-induced silencing complexes (piRISCs by associating with PIWI proteins, a subclade of the Argonaute proteins predominantly expressed in the germline. piRISCs protect the integrity of the germline genome from invasive transposable DNA elements by silencing them. Multiple piRNA biogenesis factors have been identified in Drosophila. The majority of piRNA factors are localized in the nuage, electron-dense non-membranous cytoplasmic structures located in the perinuclear regions of germ cells. Thus, piRNA biogenesis is thought to occur in the nuage in germ cells. Immunofluorescence analyses of ovaries from piRNA factor mutants have revealed a localization hierarchy of piRNA factors in female nuage. However, whether this hierarchy is female-specific or can also be applied in male gonads remains undetermined. Here, we show by immunostaining of both ovaries and testes from piRNA factor mutants that the molecular hierarchy of piRNA factors shows gender-specificity, especially for Krimper (Krimp, a Tudor-domain containing protein of unknown function(s: Krimp is dispensable for PIWI protein Aubergine (Aub nuage localization in ovaries but Krimp and Aub require each other for their proper nuage localization in testes. This suggests that the functional requirement of Krimp in piRNA biogenesis may be different in male and female gonads.

  13. Organising for Co-Production: Local Interaction Platforms for Urban Sustainability

    Directory of Open Access Journals (Sweden)

    Beth Perry

    2018-04-01

    Full Text Available Urban sustainability is a wicked issue unsuited to management through traditional decision-making structures. Co-productive arrangements, spaces and processes are inscribed in new organisational forms to bridge between diverse forms of knowledge and expertise. This article suggests that local interaction platforms (LIPs are innovative responses to these challenges, developed in two African and two European cities between 2010 and 2014. Through elaborating the design and practice of the LIPs, the article concludes that the value of this approach lies in its context-sensitivity and iterative flexibility to articulate between internationally shared challenges and distinctive local practices. Six necessary conditions for the evolution of LIPs are presented: anchorage, co-constitution, context-sensitivity, alignment, connection and shared functions. In the context of increased uncertainty, complexity and the demand for transdisciplinary knowledge production, the platform concept has wider relevance in surfacing the challenges and possibilities for more adaptive urban governance.

  14. CellMap visualizes protein-protein interactions and subcellular localization

    Science.gov (United States)

    Dallago, Christian; Goldberg, Tatyana; Andrade-Navarro, Miguel Angel; Alanis-Lobato, Gregorio; Rost, Burkhard

    2018-01-01

    Many tools visualize protein-protein interaction (PPI) networks. The tool introduced here, CellMap, adds one crucial novelty by visualizing PPI networks in the context of subcellular localization, i.e. the location in the cell or cellular component in which a PPI happens. Users can upload images of cells and define areas of interest against which PPIs for selected proteins are displayed (by default on a cartoon of a cell). Annotations of localization are provided by the user or through our in-house database. The visualizer and server are written in JavaScript, making CellMap easy to customize and to extend by researchers and developers. PMID:29497493

  15. Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks.

    Directory of Open Access Journals (Sweden)

    Xiaoqing Peng

    Full Text Available Essential proteins are indispensable for living organisms to maintain life activities and play important roles in the studies of pathology, synthetic biology, and drug design. Therefore, besides experiment methods, many computational methods are proposed to identify essential proteins. Based on the centrality-lethality rule, various centrality methods are employed to predict essential proteins in a Protein-protein Interaction Network (PIN. However, neglecting the temporal and spatial features of protein-protein interactions, the centrality scores calculated by centrality methods are not effective enough for measuring the essentiality of proteins in a PIN. Moreover, many methods, which overfit with the features of essential proteins for one species, may perform poor for other species. In this paper, we demonstrate that the centrality-lethality rule also exists in Protein Subcellular Localization Interaction Networks (PSLINs. To do this, a method based on Localization Specificity for Essential protein Detection (LSED, was proposed, which can be combined with any centrality method for calculating the improved centrality scores by taking into consideration PSLINs in which proteins play their roles. In this study, LSED was combined with eight centrality methods separately to calculate Localization-specific Centrality Scores (LCSs for proteins based on the PSLINs of four species (Saccharomyces cerevisiae, Homo sapiens, Mus musculus and Drosophila melanogaster. Compared to the proteins with high centrality scores measured from the global PINs, more proteins with high LCSs measured from PSLINs are essential. It indicates that proteins with high LCSs measured from PSLINs are more likely to be essential and the performance of centrality methods can be improved by LSED. Furthermore, LSED provides a wide applicable prediction model to identify essential proteins for different species.

  16. Transition, coexistence, and interaction of vector localized waves arising from higher-order effects

    International Nuclear Information System (INIS)

    Liu, Chong; Yang, Zhan-Ying; Zhao, Li-Chen; Yang, Wen-Li

    2015-01-01

    We study vector localized waves on continuous wave background with higher-order effects in a two-mode optical fiber. The striking properties of transition, coexistence, and interaction of these localized waves arising from higher-order effects are revealed in combination with corresponding modulation instability (MI) characteristics. It shows that these vector localized wave properties have no analogues in the case without higher-order effects. Specifically, compared to the scalar case, an intriguing transition between bright–dark rogue waves and w-shaped–anti-w-shaped solitons, which occurs as a result of the attenuation of MI growth rate to vanishing in the zero-frequency perturbation region, is exhibited with the relative background frequency. In particular, our results show that the w-shaped–anti-w-shaped solitons can coexist with breathers, coinciding with the MI analysis where the coexistence condition is a mixture of a modulation stability and MI region. It is interesting that their interaction is inelastic and describes a fusion process. In addition, we demonstrate an annihilation phenomenon for the interaction of two w-shaped solitons which is identified essentially as an inelastic collision in this system. -- Highlights: •Vector rogue wave properties induced by higher-order effects are studied. •A transition between vector rogue waves and solitons is obtained. •The link between the transition and modulation instability (MI) is demonstrated. •The coexistence of vector solitons and breathers coincides with the MI features. •An annihilation phenomenon for the vector two w-shaped solitons is presented.

  17. Transition, coexistence, and interaction of vector localized waves arising from higher-order effects

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Chong [School of Physics, Northwest University, Xi’an 710069 (China); Yang, Zhan-Ying, E-mail: zyyang@nwu.edu.cn [School of Physics, Northwest University, Xi’an 710069 (China); Zhao, Li-Chen, E-mail: zhaolichen3@163.com [School of Physics, Northwest University, Xi’an 710069 (China); Yang, Wen-Li [Institute of Modern Physics, Northwest University, Xi’an 710069 (China)

    2015-11-15

    We study vector localized waves on continuous wave background with higher-order effects in a two-mode optical fiber. The striking properties of transition, coexistence, and interaction of these localized waves arising from higher-order effects are revealed in combination with corresponding modulation instability (MI) characteristics. It shows that these vector localized wave properties have no analogues in the case without higher-order effects. Specifically, compared to the scalar case, an intriguing transition between bright–dark rogue waves and w-shaped–anti-w-shaped solitons, which occurs as a result of the attenuation of MI growth rate to vanishing in the zero-frequency perturbation region, is exhibited with the relative background frequency. In particular, our results show that the w-shaped–anti-w-shaped solitons can coexist with breathers, coinciding with the MI analysis where the coexistence condition is a mixture of a modulation stability and MI region. It is interesting that their interaction is inelastic and describes a fusion process. In addition, we demonstrate an annihilation phenomenon for the interaction of two w-shaped solitons which is identified essentially as an inelastic collision in this system. -- Highlights: •Vector rogue wave properties induced by higher-order effects are studied. •A transition between vector rogue waves and solitons is obtained. •The link between the transition and modulation instability (MI) is demonstrated. •The coexistence of vector solitons and breathers coincides with the MI features. •An annihilation phenomenon for the vector two w-shaped solitons is presented.

  18. Superconductivity in narrow-band systems with local nonretarded attractive interactions

    International Nuclear Information System (INIS)

    Micnas, R.; Ranninger, J.; Robaszkiewicz, S.

    1990-01-01

    In narrow-band systems electrons can interact with each other via a short-range nonretarded attractive potential. The origin of such an effective local attraction can be polaronic or it can be due to a coupling between electrons and excitons or plasmons. It can also result from purely chemical (electronic) mechanisms, especially in compounds with elements favoring disproportionation of valent states. These mechanisms are discussed and an exhaustive list of materials in which such local electron pairing occurs is given. The authors review the thermodynamic and electromagnetic properties of such systems in several limiting scenarios: (i) Systems with on-site pairing which can be described by the extended negative-U Hubbard model. The strong-attraction limit of this model, at which it reduces to a system of tightly bound electron pairs (bipolarons) on a lattice, is extensively discussed. These electron pairs behaving as hard-core charged bosons can exhibit a superconducting state analogous to that of superfluid 4 He II. The changeover from weak-attraction BCS-like superconductivity to the superfluidity of charged hard-core bosons is examined. (ii) Systems with intersite pairing described by an extended Hubbard model with U>0 and nearest-neighbor attraction and/or nearest-neighbor spin exchange as well as correlated hopping. (iii) A mixture of local pairs and itinerant electrons interacting via a charge-exchange mechanism giving rise to a mutually induced superconductivity in both subsystems. The authors discuss to what extent the picture of local pairing, and in particular superfluidity of hard-core charged bosons on a lattice, can be an explanation for the superconducting and normal-state properties of the high-T c oxides: doped BaBiO 3 and the cuprates

  19. Seasonal atmospheric deposition and air-sea gaseous exchange of polycyclic aromatic hydrocarbons over the Yangtze River Estuary, East China Sea: Implication for the source-sink processes

    Science.gov (United States)

    Jiang, Y.; Guo, Z.

    2017-12-01

    As the home of the largest port in the world, the Yangtze River Estuary (YRE) in the East China Sea (ECS) is adjacent to the largest economic zone in China with more than 10% of Chinese population and provides one-fifth of national GDP. The YRE is under the path of contaminated East Asian continental outflow. These make the YRE unique for the pollutant biogeochemical cycling in the world. In this work, 94 pairs of air samples and 20 surface seawater samples covering four seasons were collected from a remote receptor site in the YRE from March 2014 to January 2015, in order to explore the seasonal fluxes of air-sea gaseous exchange and atmospheric dry and wet deposition of 15 polycyclic aromatic hydrocarbons (PAHs) and their source-sink processes at the air-sea interface. The average dry and wet deposition fluxes of 15 PAHs were estimated as 879 ± 1393 ng m-2 d-1 and 755 ± 545 ng m-2 d-1, respectively. The gaseous PAHs were released from seawater to atmosphere during the whole year with an average of 3039 ± 2030 ng m-2 d-1. The gaseous exchange of PAHs was referred as the dominant process at the air-sea interface in the YRE as the magnitude of volatilization flux of PAHs exceeded that of the total dry and wet deposition. The gaseous PAH exchange flux was dominated by 3-ring PAHs, with the highest value in summer while lowest in winter, depicting a strong seasonal variation due to temperature, wind speed and air-sea concentration gradient difference among seasons. Based on the simplified mass balance estimation, net 9.6 tons/y of PAHs was volatilized from seawater to atmosphere with an area of approximately 20000 km2 in the YRE. Apart from Yangtze River input and ocean ship emissions in the entire year, the selective release of low molecular weight PAHs from sediments in winter due to re-suspension triggered by the East Asian winter monsoon could be another possible source for dissolved PAHs. This work suggests that the source-sink processes of PAHs at air-sea

  20. Fabrication Localized Surface Plasmon Resonance sensor chip of gold nanoparticles and detection lipase–osmolytes interaction

    Energy Technology Data Exchange (ETDEWEB)

    Ghodselahi, T., E-mail: t_ghodselahi@yahoo.com [Nano Mabna Iranian Inc., PO Box 1676664116, Tehran (Iran, Islamic Republic of); School of Physics, Institute for Research in Fundamental Sciences, PO Box 19395-5531, Tehran (Iran, Islamic Republic of); Hoornam, S. [Nano Mabna Iranian Inc., PO Box 1676664116, Tehran (Iran, Islamic Republic of); School of Physics, Institute for Research in Fundamental Sciences, PO Box 19395-5531, Tehran (Iran, Islamic Republic of); Department of Science, Central Tehran Branch, Islamic Azad University, Tehran (Iran, Islamic Republic of); Vesaghi, M.A. [Department of Physics, Sharif University of Technology, PO Box 11365-9161, Tehran (Iran, Islamic Republic of); Ranjbar, B.; Azizi, A. [Department of Biophysics, Tarbiat Modares University, Tehran (Iran, Islamic Republic of); Mobasheri, H. [Laboratory of Membrane Biophysics, Institute of Biochemistry and Biophysics, University of Tehran, PO Box 13145-1384, Tehran (Iran, Islamic Republic of); Biomaterials Research Institute (BRC), University of Tehran, Tehran (Iran, Islamic Republic of)

    2014-09-30

    Highlights: • We synthesized localized surface plasmon resonance sensor of gold nanoparticles by RF-sputtering and RF-PECVD. • LSPR sensor was characterized by TEM, XPS, AFM. • LSPR sensor was utilized to detect interaction between sorbitol and trehalose, with Pesudomonace Cepacia Lipase (PCL). • Unlike to trehalose, sorbitol interacts with the PCL. • Refractive index of PCL was obtained by Mie theory modeling. - Abstract: Co-deposition of RF-sputtering and RF-PECVD from acetylene gas and Au target were used to prepare sensor chip of gold nanoparticles (Au NPs). Deposition conditions were optimized to reach a Localized Surface Plasmon Resonance (LSPR) sensor chip of Au NPs with particle size less than 10 nm. The RF power was set at 180 W and the initial gas pressure was set at 0.035 mbar. Transmission Electron Microscopy (TEM) images and Atomic Force Microscopy (AFM) data were used to investigate particles size and surface morphology of LSPR sensor chip. The Au and C content of the LSPR sensor chip of Au NPs was obtained from X-ray photoelectron spectroscopy (XPS). The hydrogenated amorphous carbon (a-C:H) thin film was used as intermediate material to immobilize Au NPs on the SiO{sub 2} substrate. The interaction between two types of osmolytes, i.e. sorbitol and trehalose, with Pseudomonas cepacia lipase (PCL) were detected by the prepared LSPR biosensor chip. The detection mechanism is based on LSPR spectroscopy in which the wavelength of absorption peak is sensitive to the refractive index of the environment of the Au NPs. This mechanism eliminates the use of a probe or immobilization of PCL on the Au NPs of LSPR sensor chip. The interaction between PCL and osmolytes can change refractive index of the mixture or solution. We found that unlike to trehalose, sorbitol interacts with the PCL. This interaction increases refractive index of the PCL and sorbitol mixture. Refractive index of PCL in the presence of different concentration of sorbitol was

  1. Rescaled Local Interaction Simulation Approach for Shear Wave Propagation Modelling in Magnetic Resonance Elastography

    Directory of Open Access Journals (Sweden)

    Z. Hashemiyan

    2016-01-01

    Full Text Available Properties of soft biological tissues are increasingly used in medical diagnosis to detect various abnormalities, for example, in liver fibrosis or breast tumors. It is well known that mechanical stiffness of human organs can be obtained from organ responses to shear stress waves through Magnetic Resonance Elastography. The Local Interaction Simulation Approach is proposed for effective modelling of shear wave propagation in soft tissues. The results are validated using experimental data from Magnetic Resonance Elastography. These results show the potential of the method for shear wave propagation modelling in soft tissues. The major advantage of the proposed approach is a significant reduction of computational effort.

  2. Intermolecular interaction potentials of the methane dimer from the local density approximation

    International Nuclear Information System (INIS)

    Chen Xiangrong; Bai Yulin; Zhu Jun; Yang Xiangdong

    2004-01-01

    The intermolecular interaction potentials of methane (CH 4 ) dimer are calculated within the density functional theory in the local density approximation (LDA). It is found that the calculated potentials have minima when the intermolecular distance of CH 4 dimer is about 7.0 a.u., which is in good agreement with the experiment. The depth of the potential is 0.017 eV. The results obtained by our LDA calculations seem to agree well with those obtained by MP2, MP3, and CCSD from the Moeller-Plesset and coupled cluster methods by Tsuzuki et al. and with the experimental data

  3. Rescaled Local Interaction Simulation Approach for Shear Wave Propagation Modelling in Magnetic Resonance Elastography

    Science.gov (United States)

    Packo, P.; Staszewski, W. J.; Uhl, T.

    2016-01-01

    Properties of soft biological tissues are increasingly used in medical diagnosis to detect various abnormalities, for example, in liver fibrosis or breast tumors. It is well known that mechanical stiffness of human organs can be obtained from organ responses to shear stress waves through Magnetic Resonance Elastography. The Local Interaction Simulation Approach is proposed for effective modelling of shear wave propagation in soft tissues. The results are validated using experimental data from Magnetic Resonance Elastography. These results show the potential of the method for shear wave propagation modelling in soft tissues. The major advantage of the proposed approach is a significant reduction of computational effort. PMID:26884808

  4. Covariant interactions of two spinless particles: all local solutions of the angular condition

    International Nuclear Information System (INIS)

    Leutwyler, H.; Stern, J.

    1977-06-01

    The solutions of the algebraic problem posed by covariant Hamiltonian quantum mechanics are discussed. If, in the transverse relative coordinates, the mass and spin operators are differential operators of at most second order, the system is shown to be described by a manifestly covariant wave equation supplemented with a covariant constraint. If, in addition, one requires the wave equation and the constraint to be local in the coordinates of both particles, the freedom left in the interaction reduces to four constants. The resulting class of systems represents a generalization of the relativistic oscillator of Feynman, Kislinger and Ravndal

  5. Interaction and activity coordination of territorial customs bodies of the State fiscal service of Ukraine with local state administrations and local self-government bodies

    Directory of Open Access Journals (Sweden)

    Олексій Павлович Федотов

    2016-06-01

    Based on the results of the study the author notes that the interaction of the Ukrainian SFS customs offices and local state administrations with local self-government bodies is an inherent quality, link and component of the Ukrainian SFS Customs offices functioning organization, which aims to improve the state customs service implementation standards by the Ukrainian SFS customs houses and to ensure the said implementation efficiency. However, in the course of interaction of the Ukrainian SFS customs with local state administrations and local self-government bodies each of the mentioned organizations specializes in solving their specific tasks in accordance with their subject expertise, and forms a clear organizational system. The complementarity of such kind helps to improve the state customs affairs conductance quality and is realized through the coordination of performance of the Ukrainian SFS customs offices, local state administrations and local self-government bodies as the interaction subjects through normative, informational and analytical provision for the interaction and concretization of the activities of each subject within the planned activities.

  6. Retarded Local Dynamics of Single Fluorescent Probes in Polymeric Glass due to Interaction Strengthening

    Science.gov (United States)

    Zhang, Hao; Yang, Jingfa; Zhao, Jiang

    The effect of strengthening of interaction between single fluorescent probes and polymer matrix to the probes dynamics is investigated using single molecule fluorescence defocus microscopy. By introducing multiple hydroxyl groups to the fluorescent probes, which builds up hydrogen bonds between the probe and polymer matrix, the dynamics is discovered to be retarded. This is evidenced by the lowering of the frequency of the vibrational modes in the power spectra of the rotation trajectories of individual fluorescent probes, and also by the lowering of population of rotating probes. The results show that by strengthening the probe-matrix interaction, the local dynamics detected by the probes is equivalent to that detected by a bigger probe, due to the enhanced friction between the probe and the polymer matrix. the National Basic Research Program of China (2012CB821500).

  7. A USABILITY OF GRAPHIC DESIGN WITH LOCAL CONTENT IN THE INTERACTIVE MULTIMEDIA DESIGN FOR INDONESIAN STORYTELLING

    Directory of Open Access Journals (Sweden)

    Listia Natadjaja

    2004-01-01

    Full Text Available As the computer becomes a trend%2C interactive multimedia design can be one media to communicate the cultural knowledge. A folktale can be a one of the powerful materials to show a country’s culture. The folktale content can be understood effectively by implementing some cultural information background. The main aim of using the local content is to give a vision of the richness culture through graphic design in interactive multimedia technology. By implementing local graphic design based on the cultural background%2C user can have different feeling about the graphic style and the Indonesian richness culture. This method can also help the user to understand the interactive multimedia content easily. Finally%2C graphic design with local content is very effective for a transferring the richness culture. In order to make a good interactive multimedia design content based on a cultural background%2C a designer should need to understand about users%2C culture%2C technology and the whole design process. Abstract in Bahasa Indonesia : Seiring dengan berkembangnya penggunaan komputer menjadi suatu trend%2C interaktif multimedia desain dapat menjadi suatu media untuk mengkomunikasikan suatu pengetahuan mengenai suatu kebudayaan. Cerita rakyat%2C dapat merupakan kekuatan untuk menunjukan budaya suatu negara. Isi dari suatu cerita rakyat dapat dimengerti secara efektif dengan implementasi beberapa latar belakang budaya. Tujuan utama dari penggunaan muatan lokal adalah untuk memberikan suatu visi tentang kekayaan budaya melalui desain grafis dalam teknologi interaktif multimedia. .Dengan mengimplementasikan desain grafis lokal berdasar pada latar belakang budaya%2C pengguna multimedia dapat mempunyai perasaan yang berbeda terhadap gaya desain dan kekayaan budaya Indonesia. Metode ini diharapkan juga dapat membantu pengguna untuk mengerti isi suatu interaktif multimedia secara mudah. Pada akhirnya%2C dapat dikatakan bahwa muatan lokal sangatlah bermanfaat

  8. Gaseous elemental mercury in the marine boundary layer and air-sea flux in the Southern Ocean in austral summer.

    Science.gov (United States)

    Wang, Jiancheng; Xie, Zhouqing; Wang, Feiyue; Kang, Hui

    2017-12-15

    Gaseous elemental mercury (GEM) in the marine boundary layer (MBL), and dissolved gaseous mercury (DGM) in surface seawater of the Southern Ocean were measured in the austral summer from December 13, 2014 to February 1, 2015. GEM concentrations in the MBL ranged from 0.4 to 1.9ngm -3 (mean±standard deviation: 0.9±0.2ngm -3 ), whereas DGM concentrations in surface seawater ranged from 7.0 to 75.9pgL -1 (mean±standard deviation: 23.7±13.2pgL -1 ). The occasionally observed low GEM in the MBL suggested either the occurrence of atmospheric mercury depletion in summer, or the transport of GEM-depleted air from the Antarctic Plateau. Elevated GEM concentrations in the MBL and DGM concentrations in surface seawater were consistently observed in the ice-covered region of the Ross Sea implying the influence of the sea ice environment. Diminishing sea ice could cause more mercury evasion from the ocean to the air. Using the thin film gas exchange model, the air-sea fluxes of gaseous mercury in non-ice-covered area during the study period were estimated to range from 0.0 to 6.5ngm -2 h -1 with a mean value of 1.5±1.8ngm -2 h -1 , revealing GEM (re-)emission from the East Southern Ocean in summer. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. The Arctic Ocean marine carbon cycle: evaluation of air-sea CO2 exchanges, ocean acidification impacts and potential feedbacks

    Directory of Open Access Journals (Sweden)

    N. R. Bates

    2009-11-01

    Full Text Available At present, although seasonal sea-ice cover mitigates atmosphere-ocean gas exchange, the Arctic Ocean takes up carbon dioxide (CO2 on the order of −66 to −199 Tg C year−1 (1012 g C, contributing 5–14% to the global balance of CO2 sinks and sources. Because of this, the Arctic Ocean has an important influence on the global carbon cycle, with the marine carbon cycle and atmosphere-ocean CO2 exchanges sensitive to Arctic Ocean and global climate change feedbacks. In the near-term, further sea-ice loss and increases in phytoplankton growth rates are expected to increase the uptake of CO2 by Arctic Ocean surface waters, although mitigated somewhat by surface warming in the Arctic. Thus, the capacity of the Arctic Ocean to uptake CO2 is expected to alter in response to environmental changes driven largely by climate. These changes are likely to continue to modify the physics, biogeochemistry, and ecology of the Arctic Ocean in ways that are not yet fully understood. In surface waters, sea-ice melt, river runoff, cooling and uptake of CO2 through air-sea gas exchange combine to decrease the calcium carbonate (CaCO3 mineral saturation states (Ω of seawater while seasonal phytoplankton primary production (PP mitigates this effect. Biological amplification of ocean acidification effects in subsurface waters, due to the remineralization of organic matter, is likely to reduce the ability of many species to produce CaCO3 shells or tests with profound implications for Arctic marine ecosystems

  10. Brain Interaction during Cooperation: Evaluating Local Properties of Multiple-Brain Network.

    Science.gov (United States)

    Sciaraffa, Nicolina; Borghini, Gianluca; Aricò, Pietro; Di Flumeri, Gianluca; Colosimo, Alfredo; Bezerianos, Anastasios; Thakor, Nitish V; Babiloni, Fabio

    2017-07-21

    Subjects' interaction is the core of most human activities. This is the reason why a lack of coordination is often the cause of missing goals, more than individual failure. While there are different subjective and objective measures to assess the level of mental effort required by subjects while facing a situation that is getting harder, that is, mental workload, to define an objective measure based on how and if team members are interacting is not so straightforward. In this study, behavioral, subjective and synchronized electroencephalographic data were collected from couples involved in a cooperative task to describe the relationship between task difficulty and team coordination, in the sense of interaction aimed at cooperatively performing the assignment. Multiple-brain connectivity analysis provided information about the whole interacting system. The results showed that averaged local properties of a brain network were affected by task difficulty. In particular, strength changed significantly with task difficulty and clustering coefficients strongly correlated with the workload itself. In particular, a higher workload corresponded to lower clustering values over the central and parietal brain areas. Such results has been interpreted as less efficient organization of the network when the subjects' activities, due to high workload tendencies, were less coordinated.

  11. Protein-Protein Interactions Prediction Using a Novel Local Conjoint Triad Descriptor of Amino Acid Sequences

    Directory of Open Access Journals (Sweden)

    Jun Wang

    2017-11-01

    Full Text Available Protein-protein interactions (PPIs play crucial roles in almost all cellular processes. Although a large amount of PPIs have been verified by high-throughput techniques in the past decades, currently known PPIs pairs are still far from complete. Furthermore, the wet-lab experiments based techniques for detecting PPIs are time-consuming and expensive. Hence, it is urgent and essential to develop automatic computational methods to efficiently and accurately predict PPIs. In this paper, a sequence-based approach called DNN-LCTD is developed by combining deep neural networks (DNNs and a novel local conjoint triad description (LCTD feature representation. LCTD incorporates the advantage of local description and conjoint triad, thus, it is capable to account for the interactions between residues in both continuous and discontinuous regions of amino acid sequences. DNNs can not only learn suitable features from the data by themselves, but also learn and discover hierarchical representations of data. When performing on the PPIs data of Saccharomyces cerevisiae, DNN-LCTD achieves superior performance with accuracy as 93.12%, precision as 93.75%, sensitivity as 93.83%, area under the receiver operating characteristic curve (AUC as 97.92%, and it only needs 718 s. These results indicate DNN-LCTD is very promising for predicting PPIs. DNN-LCTD can be a useful supplementary tool for future proteomics study.

  12. Localized Modeling of Biochemical and Flow Interactions during Cancer Cell Adhesion.

    Directory of Open Access Journals (Sweden)

    Julie Behr

    Full Text Available This work focuses on one component of a larger research effort to develop a simulation tool to model populations of flowing cells. Specifically, in this study a local model of the biochemical interactions between circulating melanoma tumor cells (TC and substrate adherent polymorphonuclear neutrophils (PMN is developed. This model provides realistic three-dimensional distributions of bond formation and attendant attraction and repulsion forces that are consistent with the time dependent Computational Fluid Dynamics (CFD framework of the full system model which accounts local pressure, shear and repulsion forces. The resulting full dynamics model enables exploration of TC adhesion to adherent PMNs, which is a known participating mechanism in melanoma cell metastasis. The model defines the adhesion molecules present on the TC and PMN cell surfaces, and calculates their interactions as the melanoma cell flows past the PMN. Biochemical rates of reactions between individual molecules are determined based on their local properties. The melanoma cell in the model expresses ICAM-1 molecules on its surface, and the PMN expresses the β-2 integrins LFA-1 and Mac-1. In this work the PMN is fixed to the substrate and is assumed fully rigid and of a prescribed shear-rate dependent shape obtained from micro-PIV experiments. The melanoma cell is transported with full six-degrees-of-freedom dynamics. Adhesion models, which represent the ability of molecules to bond and adhere the cells to each other, and repulsion models, which represent the various physical mechanisms of cellular repulsion, are incorporated with the CFD solver. All models are general enough to allow for future extensions, including arbitrary adhesion molecule types, and the ability to redefine the values of parameters to represent various cell types. The model presented in this study will be part of a clinical tool for development of personalized medical treatment programs.

  13. Network model of top-down influences on local gain and contextual interactions in visual cortex.

    Science.gov (United States)

    Piëch, Valentin; Li, Wu; Reeke, George N; Gilbert, Charles D

    2013-10-22

    The visual system uses continuity as a cue for grouping oriented line segments that define object boundaries in complex visual scenes. Many studies support the idea that long-range intrinsic horizontal connections in early visual cortex contribute to this grouping. Top-down influences in primary visual cortex (V1) play an important role in the processes of contour integration and perceptual saliency, with contour-related responses being task dependent. This suggests an interaction between recurrent inputs to V1 and intrinsic connections within V1 that enables V1 neurons to respond differently under different conditions. We created a network model that simulates parametrically the control of local gain by hypothetical top-down modification of local recurrence. These local gain changes, as a consequence of network dynamics in our model, enable modulation of contextual interactions in a task-dependent manner. Our model displays contour-related facilitation of neuronal responses and differential foreground vs. background responses over the neuronal ensemble, accounting for the perceptual pop-out of salient contours. It quantitatively reproduces the results of single-unit recording experiments in V1, highlighting salient contours and replicating the time course of contextual influences. We show by means of phase-plane analysis that the model operates stably even in the presence of large inputs. Our model shows how a simple form of top-down modulation of the effective connectivity of intrinsic cortical connections among biophysically realistic neurons can account for some of the response changes seen in perceptual learning and task switching.

  14. Localized Modeling of Biochemical and Flow Interactions during Cancer Cell Adhesion.

    Science.gov (United States)

    Behr, Julie; Gaskin, Byron; Fu, Changliang; Dong, Cheng; Kunz, Robert

    2015-01-01

    This work focuses on one component of a larger research effort to develop a simulation tool to model populations of flowing cells. Specifically, in this study a local model of the biochemical interactions between circulating melanoma tumor cells (TC) and substrate adherent polymorphonuclear neutrophils (PMN) is developed. This model provides realistic three-dimensional distributions of bond formation and attendant attraction and repulsion forces that are consistent with the time dependent Computational Fluid Dynamics (CFD) framework of the full system model which accounts local pressure, shear and repulsion forces. The resulting full dynamics model enables exploration of TC adhesion to adherent PMNs, which is a known participating mechanism in melanoma cell metastasis. The model defines the adhesion molecules present on the TC and PMN cell surfaces, and calculates their interactions as the melanoma cell flows past the PMN. Biochemical rates of reactions between individual molecules are determined based on their local properties. The melanoma cell in the model expresses ICAM-1 molecules on its surface, and the PMN expresses the β-2 integrins LFA-1 and Mac-1. In this work the PMN is fixed to the substrate and is assumed fully rigid and of a prescribed shear-rate dependent shape obtained from micro-PIV experiments. The melanoma cell is transported with full six-degrees-of-freedom dynamics. Adhesion models, which represent the ability of molecules to bond and adhere the cells to each other, and repulsion models, which represent the various physical mechanisms of cellular repulsion, are incorporated with the CFD solver. All models are general enough to allow for future extensions, including arbitrary adhesion molecule types, and the ability to redefine the values of parameters to represent various cell types. The model presented in this study will be part of a clinical tool for development of personalized medical treatment programs.

  15. Positive interactions between desert granivores: localized facilitation of harvester ants by kangaroo rats.

    Directory of Open Access Journals (Sweden)

    Andrew J Edelman

    Full Text Available Facilitation, when one species enhances the environment or performance of another species, can be highly localized in space. While facilitation in plant communities has been intensely studied, the role of facilitation in shaping animal communities is less well understood. In the Chihuahuan Desert, both kangaroo rats and harvester ants depend on the abundant seeds of annual plants. Kangaroo rats, however, are hypothesized to facilitate harvester ants through soil disturbance and selective seed predation rather than competing with them. I used a spatially explicit approach to examine whether a positive or negative interaction exists between banner-tailed kangaroo rat (Dipodomys spectabilis mounds and rough harvester ant (Pogonomyrmex rugosus colonies. The presence of a scale-dependent interaction between mounds and colonies was tested by comparing fitted spatial point process models with and without interspecific effects. Also, the effect of proximity to a mound on colony mortality and spatial patterns of surviving colonies was examined. The spatial pattern of kangaroo rat mounds and harvester ant colonies was consistent with a positive interspecific interaction at small scales (<10 m. Mortality risk of vulnerable, recently founded harvester ant colonies was lower when located close to a kangaroo rat mound and proximity to a mound partly predicted the spatial pattern of surviving colonies. My findings support localized facilitation of harvester ants by kangaroo rats, likely mediated through ecosystem engineering and foraging effects on plant cover and composition. The scale-dependent effect of kangaroo rats on abiotic and biotic factors appears to result in greater founding and survivorship of young colonies near mounds. These results suggest that soil disturbance and foraging by rodents can have subtle impacts on the distribution and demography of other species.

  16. Modeling of fatigue crack induced nonlinear ultrasonics using a highly parallelized explicit local interaction simulation approach

    Science.gov (United States)

    Shen, Yanfeng; Cesnik, Carlos E. S.

    2016-04-01

    This paper presents a parallelized modeling technique for the efficient simulation of nonlinear ultrasonics introduced by the wave interaction with fatigue cracks. The elastodynamic wave equations with contact effects are formulated using an explicit Local Interaction Simulation Approach (LISA). The LISA formulation is extended to capture the contact-impact phenomena during the wave damage interaction based on the penalty method. A Coulomb friction model is integrated into the computation procedure to capture the stick-slip contact shear motion. The LISA procedure is coded using the Compute Unified Device Architecture (CUDA), which enables the highly parallelized supercomputing on powerful graphic cards. Both the explicit contact formulation and the parallel feature facilitates LISA's superb computational efficiency over the conventional finite element method (FEM). The theoretical formulations based on the penalty method is introduced and a guideline for the proper choice of the contact stiffness is given. The convergence behavior of the solution under various contact stiffness values is examined. A numerical benchmark problem is used to investigate the new LISA formulation and results are compared with a conventional contact finite element solution. Various nonlinear ultrasonic phenomena are successfully captured using this contact LISA formulation, including the generation of nonlinear higher harmonic responses. Nonlinear mode conversion of guided waves at fatigue cracks is also studied.

  17. Measuring the interactions between different locations in a muscle to monitor localized muscle fatigue.

    Science.gov (United States)

    Bingham, Adrian; Arjunan, Sridhar P; Kumar, Dinesh K

    2017-07-01

    In this study we investigated a technique for estimating the progression of localized muscle fatigue. This technique measures the dependence between motor units using high density surface electromyogram (HD-sEMG) and is based on the Normalized Mutual Information (NMI) measure. The NMI between every pair combination of the electrode array is computed to measure the interactions between electrodes. Participants in the experiment had an array of 64 electrodes (16 by 4) placed over the TA of their dominate leg such that the columns of the array ran parallel with the muscle fibers. The HD-sEMG was recorded whilst the participants maintained an isometric dorsiflexion with their dominate foot until task failure at 40% and 80% of their maximum voluntary contraction (MVC). The interactions between different locations over the muscle were computed using the recorded HD-sEMG signals. The results show that the average interactions between various locations over the TA significantly increased during fatigue at both levels of contraction. This can be attributed to the dependence in the motor units.

  18. local

    Directory of Open Access Journals (Sweden)

    Abílio Amiguinho

    2005-01-01

    Full Text Available The process of socio-educational territorialisation in rural contexts is the topic of this text. The theme corresponds to a challenge to address it having as main axis of discussion either the problem of social exclusion or that of local development. The reasons to locate the discussion in this last field of analysis are discussed in the first part of the text. Theoretical and political reasons are there articulated because the question is about projects whose intentions and practices call for the political both in the theoretical debate and in the choices that anticipate intervention. From research conducted for several years, I use contributions that aim at discuss and enlighten how school can be a potential locus of local development. Its identification and recognition as local institution (either because of those that work and live in it or because of those that act in the surrounding context are crucial steps to progressively constitute school as a partner for development. The promotion of the local values and roots, the reconstruction of socio-personal and local identities, the production of sociabilities and the equation and solution of shared problems were the dimensions of a socio-educative intervention, markedly globalising. This scenario, as it is argued, was also, intentionally, one of transformation and of deliberate change of school and of the administration of the educative territoires.

  19. Interaction between a plasma membrane-localized ankyrin-repeat protein ITN1 and a nuclear protein RTV1

    Energy Technology Data Exchange (ETDEWEB)

    Sakamoto, Hikaru [Department of Bioproduction, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri-shi, Hokkaido 093-2422 (Japan); Sakata, Keiko; Kusumi, Kensuke [Department of Biology, Faculty of Sciences, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581 (Japan); Kojima, Mikiko; Sakakibara, Hitoshi [RIKEN Plant Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045 (Japan); Iba, Koh, E-mail: koibascb@kyushu-u.org [Department of Biology, Faculty of Sciences, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581 (Japan)

    2012-06-29

    Highlights: Black-Right-Pointing-Pointer ITN1, a plasma membrane ankyrin protein, interacts with a nuclear DNA-binding protein RTV1. Black-Right-Pointing-Pointer The nuclear transport of RTV1 is partially inhibited by interaction with ITN1. Black-Right-Pointing-Pointer RTV1 can promote the nuclear localization of ITN1. Black-Right-Pointing-Pointer Both overexpression of RTV1 and the lack of ITN1 increase salicylic acids sensitivity in plants. -- Abstract: The increased tolerance to NaCl 1 (ITN1) protein is a plasma membrane (PM)-localized protein involved in responses to NaCl stress in Arabidopsis. The predicted structure of ITN1 is composed of multiple transmembrane regions and an ankyrin-repeat domain that is known to mediate protein-protein interactions. To elucidate the molecular functions of ITN1, we searched for interacting partners using a yeast two-hybrid assay, and a nuclear-localized DNA-binding protein, RTV1, was identified as a candidate. Bimolecular fluorescence complementation analysis revealed that RTV1 interacted with ITN1 at the PM and nuclei in vivo. RTV1 tagged with red fluorescent protein localized to nuclei and ITN1 tagged with green fluorescent protein localized to PM; however, both proteins localized to both nuclei and the PM when co-expressed. These findings suggest that RTV1 and ITN1 regulate the subcellular localization of each other.

  20. Copper plasmonics and catalysis: role of electron-phonon interactions in dephasing localized surface plasmons

    Science.gov (United States)

    Sun, Qi-C.; Ding, Yuchen; Goodman, Samuel M.; H. Funke, Hans; Nagpal, Prashant

    2014-10-01

    Copper metal can provide an important alternative for the development of efficient, low-cost and low-loss plasmonic nanoparticles, and selective nanocatalysts. However, poor chemical stability and lack of insight into photophysics and plasmon decay mechanisms has impeded study. Here, we use smooth conformal ALD coating on copper nanoparticles to prevent surface oxidation, and study dephasing time for localized surface plasmons on different sized copper nanoparticles. Using dephasing time as a figure of merit, we elucidate the role of electron-electron, electron-phonon, impurity, surface and grain boundary scattering on the decay of localized surface plasmon waves. Using our quantitative analysis and different temperature dependent measurements, we show that electron-phonon interactions dominate over other scattering mechanisms in dephasing plasmon waves. While interband transitions in copper metal contributes substantially to plasmon losses, tuning surface plasmon modes to infrared frequencies leads to a five-fold enhancement in the quality factor. These findings demonstrate that conformal ALD coatings can improve the chemical stability for copper nanoparticles, even at high temperatures (>300 °C) in ambient atmosphere, and nanoscaled copper is a good alternative material for many potential applications in nanophotonics, plasmonics, catalysis and nanoscale electronics.Copper metal can provide an important alternative for the development of efficient, low-cost and low-loss plasmonic nanoparticles, and selective nanocatalysts. However, poor chemical stability and lack of insight into photophysics and plasmon decay mechanisms has impeded study. Here, we use smooth conformal ALD coating on copper nanoparticles to prevent surface oxidation, and study dephasing time for localized surface plasmons on different sized copper nanoparticles. Using dephasing time as a figure of merit, we elucidate the role of electron-electron, electron-phonon, impurity, surface and grain

  1. Aerosol-Cloud Interactions During Puijo Cloud Experiments - The effects of weather and local sources

    Science.gov (United States)

    Komppula, Mika; Portin, Harri; Leskinen, Ari; Romakkaniemi, Sami; Brus, David; Neitola, Kimmo; Hyvärinen, Antti-Pekka; Kortelainen, Aki; Hao, Liqing; Miettinen, Pasi; Jaatinen, Antti; Ahmad, Irshad; Lihavainen, Heikki; Laaksonen, Ari; Lehtinen, Kari E. J.

    2013-04-01

    The Puijo measurement station has provided continuous data on aerosol-cloud interactions since 2006. The station is located on top of the Puijo observation tower (306 m a.s.l, 224 m above the surrounding lake level) in Kuopio, Finland. The top of the tower is covered by cloud about 15 % of the time, offering perfect conditions for studying aerosol-cloud interactions. With a twin-inlet setup (total and interstitial inlets) we are able to separate the activated particles from the interstitial (non-activated) particles. The continuous twin-inlet measurements include aerosol size distribution, scattering and absorption. In addition cloud droplet number and size distribution are measured continuously with weather parameters. During the campaigns the twin-inlet system was additionally equipped with aerosol mass spectrometer (AMS) and Single Particle Soot Photometer (SP-2). This way we were able to define the differences in chemical composition of the activated and non-activated particles. Potential cloud condensation nuclei (CCN) in different supersaturations were measured with two CCN counters (CCNC). The other CCNC was operated with a Differential Mobility Analyzer (DMA) to obtain size selected CCN spectra. Other additional measurements included Hygroscopic Tandem Differential Mobility Analyzer (HTDMA) for particle hygroscopicity. Additionally the valuable vertical wind profiles (updraft velocities) are available from Halo Doppler lidar during the 2011 campaign. Cloud properties (droplet number and effective radius) from MODIS instrument onboard Terra and Aqua satellites were retrieved and compared with the measured values. This work summarizes the two latest intensive campaigns, Puijo Cloud Experiments (PuCE) 2010 & 2011. We study especially the effect of the local sources on the cloud activation behaviour of the aerosol particles. The main local sources include a paper mill, a heating plant, traffic and residential areas. The sources can be categorized and identified

  2. The air-sea equilibrium and time trend of hexachlorocyclohexanes in the Atlantic Ocean between the Arctic and Antarctica.

    Science.gov (United States)

    Lakaschus, Sonke; Weber, Kurt; Wania, Frank; Bruhn, Regina; Schrems, Otto

    2002-01-15

    Hexachlorocyclohexanes (HCHs) were determined simultaneously in air and seawater during two cruises across the Atlantic Ocean between the Arctic Ocean (Ny-Alesund/ Svalbard, 79 degrees N; 12 degrees E) and the Antarctic Continent (Neumayer Station/ Ekstroem Ice Shelf, 70 degrees S; 8.2 degrees W) in 1999/ 2000. The concentrations of alpha-HCH and gamma-HCH in air and surface waters of the Arctic exceeded those in Antarctica by 1-2 orders of magnitude. The gaseous concentrations of gamma-HCH were highest above the North Sea and between 20 degrees N and 30 degrees S. Fugacity fractions were used to estimate the direction of the air-sea gas exchange. These showed for alpha-HCH thatthe measured concentrations in both phases were close to equilibrium in the North Atlantic (78 degrees N-40 degrees N), slightly undersaturated between 30 degrees N and 10 degrees S and again close to equilibrium between 20 degrees S and 50 degrees S. Y-HCH has reached phase equilibrium in the North Atlantic as alpha-HCH, but the surface waters of the tropical and southern Atlantic were strongly undersaturated with y-HCH, especially between 30 degrees N and 20 degrees S. These findings are significantly different from two earlier estimates around 1990 as a result of global emission changes within the past decade. Therefore, we investigated the time trend of the HCHs in the surface waters of the Atlantic between 50 degrees N and 60 degrees S on the basis of archived samples taken in 1987-1997 and those from 1999. A decrease of alpha-HCH by a factor of approximately 4 is observed at all sampling locations. No decrease of gamma-HCH occurred between 30 degrees N and 30 degrees S, but there was a decrease in the North Atlantic, North Sea, and in the South Atlantic south of 40 degrees S. The constant level of gamma-HCH in the tropical Atlantic confirms the conclusion that the tropical Atlantic acts as a sink for y-HCH at present time. The measured alpha-HCH seawater concentrations were compared

  3. Solar wind/local interstellar medium interaction including charge exchange with neural hydrogen

    Science.gov (United States)

    Pauls, H. Louis; Zank, Gary P.

    1995-01-01

    We present results from a hydrodynamic model of the interaction of the solar wind with the local interstellar medium (LISM), self-consistently taking into account the effects of charge exchange between the plasma component and the interstellar neutrals. The simulation is fully time dependent, and is carried out in two or three dimensions, depending on whether the helio-latitudinal dependence of the solar wind speed and number density (both giving rise to three dimensional effects) are included. As a first approximation it is assumed that the neutral component of the flow can be described by a single, isotropic fluid. Clearly, this is not the actual situation, since charge exchange with the supersonic solar wind plasma in the region of the nose results in a 'second' neutral fluid propagating in the opposite direction as that of the LISM neutrals.

  4. Collective behaviour of climate indices in the North Pacific air-sea system and its potential relationships with decadal climate changes

    Institute of Scientific and Technical Information of China (English)

    Wang Xiao-Juan; Zhi Rong; He Wen-Ping; Gong Zhi-Qiang

    2012-01-01

    A climate network of six climate indices of the North Pacific air-sea system is constructed during the period of 1948-2009.In order to find out the inherent relationship between the intrinsic mechanism of climate index network and the important climate shift,the synchronization behaviour and the coupling behaviour of these indices are investigated.Results indicate that climate network synchronization happened around the beginning of the 1960s,in the middle of the 1970s and at the beginnings of the 1990s and the 2000s separately.These synchronization states were always followed by the decrease of the coupling coefficient.Each synchronization of the network was well associated with the abrupt phase or trend changes of annually accumulated abnormal vaiues of North Pacific sea-surface temperature and 500-hPa height,among which the one that happened in the middle of the 1970s is the most noticeable climate shift.We can also obtain this mysterious shift from the first mode of the empirical orthogonal function of six indices.That is to say,abrupt climate shift in North Pacific air-sea system is not only shown by the phase or trend changes of climate indices,but also night be indicated by the synchronizing and the coupling of climate indices.Furthermore,at the turning point of 1975,there are also abrupt correlation changes in the yearly mode of spatial degree distribution of the sea surface temperature and 500-hPa height in the region of the North Pacific,which further proves the probability of climate index synchronization and coupling shift in air-sea systems.

  5. Air-sea exchange and gas-particle partitioning of polycyclic aromatic hydrocarbons over the northwestern Pacific Ocean: Role of East Asian continental outflow

    Science.gov (United States)

    Wu, Z.; Guo, Z.

    2017-12-01

    We measured 15 parent polycyclic aromatic hydrocarbons (PAHs) in atmosphere and water during a research cruise from the East China Sea (ECS) to the northwestern Pacific Ocean (NWP) in the spring of 2015 to investigate the occurrence, air-sea gas exchange, and gas-particle partitioning of PAHs with a particular focus on the influence of East Asian continental outflow. The gaseous PAH composition and identification of sources were consistent with PAHs from the upwind area, indicating that the gaseous PAHs (three- to five-ring PAHs) were influenced by upwind land pollution. In addition, air-sea exchange fluxes of gaseous PAHs were estimated to be -54.2 to 107.4 ng m-2 d-1, and was indicative of variations of land-based PAH inputs. The logarithmic gas-particle partition coefficient (logKp) of PAHs regressed linearly against the logarithmic subcooled liquid vapor pressure, with a slope of -0.25. This was significantly larger than the theoretical value (-1), implying disequilibrium between the gaseous and particulate PAHs over the NWP. The non-equilibrium of PAH gas-particle partitioning was shielded from the volatilization of three-ring gaseous PAHs from seawater and lower soot concentrations in particular when the oceanic air masses prevailed. Modeling PAH absorption into organic matter and adsorption onto soot carbon revealed that the status of PAH gas-particle partitioning deviated more from the modeling Kp for oceanic air masses than those for continental air masses, which coincided with higher volatilization of three-ring PAHs and confirmed the influence of air-sea exchange. Meanwhile, significant linear regressions between logKp and logKoa (logKsa) for PAHs were observed for continental air masses, suggesting the dominant effect of East Asian continental outflow on atmospheric PAHs over the NWP during the sampling campaign.

  6. Air-sea exchange of CO2 in the Gulf of Kutch, northern Arabian Sea based on bomb-carbon in corals and tree rings

    International Nuclear Information System (INIS)

    Chakraborty, S.; Ramesh, R.; Krishnaswami, S.

    1994-01-01

    Radiocarbon analyses were carried out in the annual bands of a 40 year old coral collected from the Gulf of Kutch (22.6degN, 70degE) in the northern Arabian Sea and in the annual rings of a teak tree from Thane (19deg14'N, 73deg24'E) near Bombay. These measurements were made in order to obtain the rates of air-sea exchange of CO 2 and the advective mixing of water in the Gulf of Kutch. The Δ 14 C peak in the Thane tree occurs in the year 1964, with a value of ∼630 part per thousand, significantly lower than that of the mean atmospheric Δ 14 C of the northern hemisphere (∼1000 part per thousand). The radiocarbon time series of the coral was modelled considering the supply of carbon and radiocarbon to the gulf through air-sea exchange and advective water transport from the open Arabian Sea. A reasonable fit for the coral data was obtained with an air-sea CO 2 exchange rate of 11-12 mol m -2 yr -1 , and an advective velocity of 28 m yr -1 between the Arabian Sea and the Gulf of Kutch; this was based on a model generated time series for radiocarbon in the Arabian Sea. The deduced velocity (∼ 28 m yr -1 ) of the advective transport of water between the Gulf and the Arabian Sea is much lower than the surface tidal current velocity in this region, but can be understood in terms of net fluxes of carbon and radiocarbon to the gulf to match the observed coral Δ 14 C time series. (author). 30 refs., 7 figs., 2 tabs

  7. Collective Behaviors in Spatially Extended Systems with Local Interactions and Synchronous Updating

    Science.gov (United States)

    ChatÉ, H.; Manneville, P.

    1992-01-01

    Assessing the extent to which dynamical systems with many degrees of freedom can be described within a thermodynamics formalism is a problem that currently attracts much attention. In this context, synchronously updated regular lattices of identical, chaotic elements with local interactions are promising models for which statistical mechanics may be hoped to provide some insights. This article presents a large class of cellular automata rules and coupled map lattices of the above type in space dimensions d = 2 to 6.Such simple models can be approached by a mean-field approximation which usually reduces the dynamics to that of a map governing the evolution of some extensive density. While this approximation is exact in the d = infty limit, where macroscopic variables must display the time-dependent behavior of the mean-field map, basic intuition from equilibrium statistical mechanics rules out any such behavior in a low-dimensional systems, since it would involve the collective motion of locally disordered elements.The models studied are chosen to be as close as possible to mean-field conditions, i.e., rather high space dimension, large connectivity, and equal-weight coupling between sites. While the mean-field evolution is never observed, a new type of non-trivial collective behavior is found, at odds with the predictions of equilibrium statistical mechanics. Both in the cellular automata models and in the coupled map lattices, macroscopic variables frequently display a non-transient, time-dependent, low-dimensional dynamics emerging out of local disorder. Striking examples are period 3 cycles in two-state cellular automata and a Hopf bifurcation for a d = 5 lattice of coupled logistic maps. An extensive account of the phenomenology is given, including a catalog of behaviors, classification tables for the celular automata rules, and bifurcation diagrams for the coupled map lattices.The observed underlying dynamics is accompanied by an intrinsic quasi-Gaussian noise

  8. Interaction of Local Anesthetics with Biomembranes Consisting of Phospholipids and Cholesterol: Mechanistic and Clinical Implications for Anesthetic and Cardiotoxic Effects

    Directory of Open Access Journals (Sweden)

    Hironori Tsuchiya

    2013-01-01

    Full Text Available Despite a long history in medical and dental application, the molecular mechanism and precise site of action are still arguable for local anesthetics. Their effects are considered to be induced by acting on functional proteins, on membrane lipids, or on both. Local anesthetics primarily interact with sodium channels embedded in cell membranes to reduce the excitability of nerve cells and cardiomyocytes or produce a malfunction of the cardiovascular system. However, the membrane protein-interacting theory cannot explain all of the pharmacological and toxicological features of local anesthetics. The administered drug molecules must diffuse through the lipid barriers of nerve sheaths and penetrate into or across the lipid bilayers of cell membranes to reach the acting site on transmembrane proteins. Amphiphilic local anesthetics interact hydrophobically and electrostatically with lipid bilayers and modify their physicochemical property, with the direct inhibition of membrane functions, and with the resultant alteration of the membrane lipid environments surrounding transmembrane proteins and the subsequent protein conformational change, leading to the inhibition of channel functions. We review recent studies on the interaction of local anesthetics with biomembranes consisting of phospholipids and cholesterol. Understanding the membrane interactivity of local anesthetics would provide novel insights into their anesthetic and cardiotoxic effects.

  9. Interacting factors and cellular localization of SR protein-specific kinase Dsk1

    International Nuclear Information System (INIS)

    Tang, Zhaohua; Luca, Maria; Taggart-Murphy, Laura; Portillio, Jessica; Chang, Cathey; Guven, Ayse; Lin, Ren-Jang; Murray, Johanne; Carr, Antony

    2012-01-01

    Schizosaccharomyces pombe Dsk1 is an SR protein-specific kinase (SRPK), whose homologs have been identified in every eukaryotic organism examined. Although discovered as a mitotic regulator with protein kinase activity toward SR splicing factors, it remains largely unknown about what and how Dsk1 contributes to cell cycle and pre-mRNA splicing. In this study, we investigated the Dsk1 function by determining interacting factors and cellular localization of the kinase. Consistent with its reported functions, we found that pre-mRNA processing and cell cycle factors are prominent among the proteins co-purified with Dsk1. The identification of these factors led us to find Rsd1 as a novel Dsk1 substrate, as well as the involvement of Dsk1 in cellular distribution of poly(A) + RNA. In agreement with its role in nuclear events, we also found that Dsk1 is mainly localized in the nucleus during G 2 phase and at mitosis. Furthermore, we revealed the oscillation of Dsk1 protein in a cell cycle-dependent manner. This paper marks the first comprehensive analysis of in vivo Dsk1-associated proteins in fission yeast. Our results reflect the conserved role of SRPK family in eukaryotic organisms, and provide information about how Dsk1 functions in pre-mRNA processing and cell-division cycle.

  10. Interacting factors and cellular localization of SR protein-specific kinase Dsk1

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Zhaohua, E-mail: ztang@jsd.claremont.edu [W.M. Keck Science Center, The Claremont Colleges, Claremont, CA 91711 (United States); Luca, Maria; Taggart-Murphy, Laura; Portillio, Jessica; Chang, Cathey; Guven, Ayse [W.M. Keck Science Center, The Claremont Colleges, Claremont, CA 91711 (United States); Lin, Ren-Jang [Department of Molecular and Cellular Biology, Beckman Research Institute of the City of Hope, Duarte, CA 91010 (United States); Murray, Johanne; Carr, Antony [Genome Damage and Stability Center, University of Sussex, Falmer, BN1 9RQ (United Kingdom)

    2012-10-01

    Schizosaccharomyces pombe Dsk1 is an SR protein-specific kinase (SRPK), whose homologs have been identified in every eukaryotic organism examined. Although discovered as a mitotic regulator with protein kinase activity toward SR splicing factors, it remains largely unknown about what and how Dsk1 contributes to cell cycle and pre-mRNA splicing. In this study, we investigated the Dsk1 function by determining interacting factors and cellular localization of the kinase. Consistent with its reported functions, we found that pre-mRNA processing and cell cycle factors are prominent among the proteins co-purified with Dsk1. The identification of these factors led us to find Rsd1 as a novel Dsk1 substrate, as well as the involvement of Dsk1 in cellular distribution of poly(A){sup +} RNA. In agreement with its role in nuclear events, we also found that Dsk1 is mainly localized in the nucleus during G{sub 2} phase and at mitosis. Furthermore, we revealed the oscillation of Dsk1 protein in a cell cycle-dependent manner. This paper marks the first comprehensive analysis of in vivo Dsk1-associated proteins in fission yeast. Our results reflect the conserved role of SRPK family in eukaryotic organisms, and provide information about how Dsk1 functions in pre-mRNA processing and cell-division cycle.

  11. Local interaction simulation approach to modelling nonclassical, nonlinear elastic behavior in solids.

    Science.gov (United States)

    Scalerandi, Marco; Agostini, Valentina; Delsanto, Pier Paolo; Van Den Abeele, Koen; Johnson, Paul A

    2003-06-01

    Recent studies show that a broad category of materials share "nonclassical" nonlinear elastic behavior much different from "classical" (Landau-type) nonlinearity. Manifestations of "nonclassical" nonlinearity include stress-strain hysteresis and discrete memory in quasistatic experiments, and specific dependencies of the harmonic amplitudes with respect to the drive amplitude in dynamic wave experiments, which are remarkably different from those predicted by the classical theory. These materials have in common soft "bond" elements, where the elastic nonlinearity originates, contained in hard matter (e.g., a rock sample). The bond system normally comprises a small fraction of the total material volume, and can be localized (e.g., a crack in a solid) or distributed, as in a rock. In this paper a model is presented in which the soft elements are treated as hysteretic or reversible elastic units connected in a one-dimensional lattice to elastic elements (grains), which make up the hard matrix. Calculations are performed in the framework of the local interaction simulation approach (LISA). Experimental observations are well predicted by the model, which is now ready both for basic investigations about the physical origins of nonlinear elasticity and for applications to material damage diagnostics.

  12. Coccolithophore surface distributions in the North Atlantic and their modulation of the air-sea flux of CO2 from 10 years of satellite Earth observation data

    Directory of Open Access Journals (Sweden)

    J. D. Shutler

    2013-04-01

    Full Text Available Coccolithophores are the primary oceanic phytoplankton responsible for the production of calcium carbonate (CaCO3. These climatically important plankton play a key role in the oceanic carbon cycle as a major contributor of carbon to the open ocean carbonate pump (~50% and their calcification can affect the atmosphere-to-ocean (air-sea uptake of carbon dioxide (CO2 through increasing the seawater partial pressure of CO2 (pCO2. Here we document variations in the areal extent of surface blooms of the globally important coccolithophore, Emiliania huxleyi, in the North Atlantic over a 10-year period (1998–2007, using Earth observation data from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS. We calculate the annual mean sea surface areal coverage of E. huxleyi in the North Atlantic to be 474 000 ± 104 000 km2, which results in a net CaCO3 carbon (CaCO3-C production of 0.14–1.71 Tg CaCO3-C per year. However, this surface coverage (and, thus, net production can fluctuate inter-annually by −54/+8% about the mean value and is strongly correlated with the El Niño/Southern Oscillation (ENSO climate oscillation index (r=0.75, pE. huxleyi blooms in the North Atlantic can increase the pCO2 and, thus, decrease the localised air-sea flux of atmospheric CO2. In regions where the blooms are prevalent, the average reduction in the monthly air-sea CO2 flux can reach 55%. The maximum reduction of the monthly air-sea CO2 flux in the time series is 155%. This work suggests that the high variability, frequency and distribution of these calcifying plankton and their impact on pCO2 should be considered if we are to fully understand the variability of the North Atlantic air-to-sea flux of CO2. We estimate that these blooms can reduce the annual N. Atlantic net sink atmospheric CO2 by between 3–28%.

  13. Interactions of tailings leachate with local liner materials found at Canonsburg, Pennsylvania

    International Nuclear Information System (INIS)

    Dodson, M.E.; Gee, G.W.; Serne, R.J.

    1984-04-01

    The mill tailings site at Canonsburg, Pennsylvania is the first mill site to receive remedial action under the Department of Energy's Uranium Mill Tailings Remedial Action Program. Part of this remedial action will require excavating the 53,500 m 3 (70,000 yd 3 ) of tailings on the site having a specific activity exceeding 100 pCi/g, and encapsulating these contaminated tailings in a clay-lined cell. As part of the remedial action effort, Pacific Northwest Laboratory has been studying the interactions of tailings and tailings leachate with locally occurring clays proposed for liner materials. These studies include physical and chemical characterization of amended and unamended local clays, chemical characterization of the tailings, column studies of tailings leached with deionized water, and column studies of clays contacted with tailings solutions to determine the attenuation properties of the proposed liner materials. Column studies of tailings leached with deionized water indicated that the Canonsburg tailings could represent a source of soluble radium-226 and uranium-238, several trace metals, cations, and the anions SO 4 , NO 3 , and Cl. Of these soluble contaminants, uranium-238, radium-226, the trace metals As and Mo, and the anions F and SO 4 were present at levels exceeding maximum concentration levels in the tailings leaching column effluents. However, local clays, both in amended and unamended form were effective in attenuating contaminant migration. The soil amendments tested failed to increase radium attenuation. The tailings leaching studies indicated that the tailings will produce leachates of neutral pH and relatively low contaminant levels for at least 200 years. We believe that compacting the tailings within the encapsulation cell will help to reduce leaching of contaminants from the liner system, since very low permeabilities ( -8 cm/s) were observed for even slightly compacted tailings materials

  14. Weak Localization and Antilocalization in Topological Materials with Impurity Spin-Orbit Interactions

    Science.gov (United States)

    Hankiewicz, Ewelina M.; Culcer, Dimitrie

    2017-01-01

    Topological materials have attracted considerable experimental and theoretical attention. They exhibit strong spin-orbit coupling both in the band structure (intrinsic) and in the impurity potentials (extrinsic), although the latter is often neglected. In this work, we discuss weak localization and antilocalization of massless Dirac fermions in topological insulators and massive Dirac fermions in Weyl semimetal thin films, taking into account both intrinsic and extrinsic spin-orbit interactions. The physics is governed by the complex interplay of the chiral spin texture, quasiparticle mass, and scalar and spin-orbit scattering. We demonstrate that terms linear in the extrinsic spin-orbit scattering are generally present in the Bloch and momentum relaxation times in all topological materials, and the correction to the diffusion constant is linear in the strength of the extrinsic spin-orbit. In topological insulators, which have zero quasiparticle mass, the terms linear in the impurity spin-orbit coupling lead to an observable density dependence in the weak antilocalization correction. They produce substantial qualitative modifications to the magnetoconductivity, differing greatly from the conventional Hikami-Larkin-Nagaoka formula traditionally used in experimental fits, which predicts a crossover from weak localization to antilocalization as a function of the extrinsic spin-orbit strength. In contrast, our analysis reveals that topological insulators always exhibit weak antilocalization. In Weyl semimetal thin films having intermediate to large values of the quasiparticle mass, we show that extrinsic spin-orbit scattering strongly affects the boundary of the weak localization to antilocalization transition. We produce a complete phase diagram for this transition as a function of the mass and spin-orbit scattering strength. Throughout the paper, we discuss implications for experimental work, and, at the end, we provide a brief comparison with transition metal

  15. Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks

    Science.gov (United States)

    LAVALLÉE-ADAM, MATHIEU; COULOMBE, BENOIT; BLANCHETTE, MATHIEU

    2015-01-01

    High-throughput methods for identifying protein-protein interactions produce increasingly complex and intricate interaction networks. These networks are extremely rich in information, but extracting biologically meaningful hypotheses from them and representing them in a human-readable manner is challenging. We propose a method to identify Gene Ontology terms that are locally over-represented in a subnetwork of a given biological network. Specifically, we propose several methods to evaluate the degree of clustering of proteins associated to a particular GO term in both weighted and unweighted PPI networks, and describe efficient methods to estimate the statistical significance of the observed clustering. We show, using Monte Carlo simulations, that our best approximation methods accurately estimate the true p-value, for random scale-free graphs as well as for actual yeast and human networks. When applied to these two biological networks, our approach recovers many known complexes and pathways, but also suggests potential functions for many subnetworks. Online Supplementary Material is available at www.liebertonline.com. PMID:20377456

  16. Comment on "Many-body localization in Ising models with random long-range interactions"

    Science.gov (United States)

    Maksymov, Andrii O.; Rahman, Noah; Kapit, Eliot; Burin, Alexander L.

    2017-11-01

    This Comment is dedicated to the investigation of many-body localization in a quantum Ising model with long-range power-law interactions r-α, relevant for a variety of systems ranging from electrons in Anderson insulators to spin excitations in chains of cold atoms. It has earlier been argued [arXiv:cond-mat/0611387 (2005); Phys. Rev. B 91, 094202 (2015), 10.1103/PhysRevB.91.094202] that this model obeys the dimensional constraint suggesting the delocalization of all finite-temperature states in the thermodynamic limit for α ≤2 d in a d -dimensional system. This expectation conflicts with the recent numerical studies of the specific interacting spin model of Li et al. [Phys. Rev. A 94, 063625 (2016), 10.1103/PhysRevA.94.063625]. To resolve this controversy we reexamine the model of Li et al. [Phys. Rev. A 94, 063625 (2016), 10.1103/PhysRevA.94.063625] and demonstrate that the infinite-temperature states there obey the dimensional constraint. The earlier developed scaling theory for the critical system size required for delocalization is extended to small exponents 0 ≤α ≤d . The disagreements between the two works are explained by the nonstandard selection of investigated states in the ordered phase in the work of Li et al. [Phys. Rev. A 94, 063625 (2016)type="doi" specific-use="suppress-display">10.1103/PhysRevA.94.063625].

  17. Interaction study of rice stripe virus proteins reveals a region of the nucleocapsid protein (NP) required for NP self-interaction and nuclear localization.

    Science.gov (United States)

    Lian, Sen; Cho, Won Kyong; Jo, Yeonhwa; Kim, Sang-Min; Kim, Kook-Hyung

    2014-04-01

    Rice stripe virus (RSV), which belongs to the genus Tenuivirus, is an emergent virus problem. The RSV genome is composed of four single-strand RNAs (RNA1-RNA4) and encodes seven proteins. We investigated interactions between six of the RSV proteins by yeast-two hybrid (Y2H) assay in vitro and by bimolecular fluorescence complementation (BiFC) in planta. Y2H identified self-interaction of the nucleocapsid protein (NP) and NS3, while BiFC revealed self-interaction of NP, NS3, and NCP. To identify regions(s) and/or crucial amino acid (aa) residues required for NP self-interaction, we generated various truncated and aa substitution mutants. Y2H assay showed that the N-terminal region of NP (aa 1-56) is necessary for NP self-interaction. Further analysis with substitution mutants demonstrated that additional aa residues located at 42-47 affected their interaction with full-length NP. These results indicate that the N-terminal region (aa 1-36 and 42-47) is required for NP self-interaction. BiFC and co-localization studies showed that the region required for NP self-interaction is also required for NP localization at the nucleus. Overall, our results indicate that the N-terminal region (aa 1-47) of the NP is important for NP self-interaction and that six aa residues (42-47) are essential for both NP self-interaction and nuclear localization. Copyright © 2014 Elsevier B.V. All rights reserved.

  18. Effects of Rashba and Dresselhaus spin-orbit interactions on the ground state of two-dimensional localized spins.

    Science.gov (United States)

    Oh, J H; Lee, K-J; Lee, Hyun-Woo; Shin, M

    2014-05-14

    Starting with the indirect exchange model influenced by the Rashba and the Dresselhaus spin-orbit interactions, we derive the Dzyaloshinskii-Moriya interaction of localized spins. The strength of the Dzyaloshinskii-Moriya interaction is compared with that of the Heisenberg exchange term as a function of atomic distance. Using the calculated interaction strengths, we discuss the formation of various atomic ground states as a function of temperature and external magnetic field. By plotting the magnetic field-temperature phase diagram, we present approximate phase boundaries between the spiral, Skyrmion and ferromagnetic states of the two-dimensional weak ferromagnetic system.

  19. Effects of Rashba and Dresselhaus spin–orbit interactions on the ground state of two-dimensional localized spins

    International Nuclear Information System (INIS)

    Oh, J H; Shin, M; Lee, K-J; Lee, Hyun-Woo

    2014-01-01

    Starting with the indirect exchange model influenced by the Rashba and the Dresselhaus spin–orbit interactions, we derive the Dzyaloshinskii–Moriya interaction of localized spins. The strength of the Dzyaloshinskii–Moriya interaction is compared with that of the Heisenberg exchange term as a function of atomic distance. Using the calculated interaction strengths, we discuss the formation of various atomic ground states as a function of temperature and external magnetic field. By plotting the magnetic field–temperature phase diagram, we present approximate phase boundaries between the spiral, Skyrmion and ferromagnetic states of the two-dimensional weak ferromagnetic system. (paper)

  20. Variability of 14C reservoir age and air-sea flux of CO2 in the Peru-Chile upwelling region during the past 12,000 years

    Science.gov (United States)

    Carré, Matthieu; Jackson, Donald; Maldonado, Antonio; Chase, Brian M.; Sachs, Julian P.

    2016-01-01

    The variability of radiocarbon marine reservoir age through time and space limits the accuracy of chronologies in marine paleo-environmental archives. We report here new radiocarbon reservoir ages (ΔR) from the central coast of Chile ( 32°S) for the Holocene period and compare these values to existing reservoir age reconstructions from southern Peru and northern Chile. Late Holocene ΔR values show little variability from central Chile to Peru. Prior to 6000 cal yr BP, however, ΔR values were markedly increased in southern Peru and northern Chile, while similar or slightly lower-than-modern ΔR values were observed in central Chile. This extended dataset suggests that the early Holocene was characterized by a substantial increase in the latitudinal gradient of marine reservoir age between central and northern Chile. This change in the marine reservoir ages indicates that the early Holocene air-sea flux of CO2 could have been up to five times more intense than in the late Holocene in the Peruvian upwelling, while slightly reduced in central Chile. Our results show that oceanic circulation changes in the Humboldt system during the Holocene have substantially modified the air-sea carbon flux in this region.

  1. Interactive Exhibits Foster Partnership and Engage Diverse Learners at Their Local Libraries

    Science.gov (United States)

    LaConte, K.; Dusenbery, P.; Fitzhugh, G.; Harold, J. B.; Holland, A.

    2016-12-01

    Learners frequently need to access increasingly complex information to help them understand our changing world. More and more libraries are transforming themselves into places where learners not only access STEM information, but interact with professionals and undertake hands-on learning. Libraries are beginning to position themselves as part of learning ecosystems that contribute to a collective impact on the community. Traveling STEM exhibits are catalyzing these partnerships and engaging students, families, and adults in repeat visits through an accessible venue: their public library. The impact of the STAR Library Education Network's (STAR_Net) Discover Earth: A Century of Change exhibit on partnerships, the circulation of STEM resources, and the engagement of learners was studied by an external evaluation team. The STAR_Net project's summative evaluation utilized mixed methods to investigate project implementation and its outcomes. Methods included pre- and post-exhibit surveys administered to staff from each library that hosted the exhibits; interviews with staff from host libraries; patron surveys; exhibit-related circulation records; web metrics regarding the online STAR_Net community of practice; and site visits. A subset of host libraries recruited professionals, who delivered programming that connected Earth systems science, weather, climate, and conservation themes from the exhibit to local issues. Library patrons improved their knowledge about STEM topics presented in the exhibits and associated programming, and patrons viewing the exhibit reflected the demographics of their communities. In a follow-up survey, patrons reported spending an average of 60 minutes looking at the exhibit over their cumulative visits to the library. In contrast, visitors might visit a museum only once to look at a comparably-sized traveling exhibit due to barriers such as cost and distance. Exhibit host libraries reported an increase in the circulation of Earth science

  2. Control of a shock wave-boundary layer interaction using localized arc filament plasma actuators

    Science.gov (United States)

    Webb, Nathan Joseph

    Supersonic flight is currently possible, but expensive. Inexpensive supersonic travel will require increased efficiency of high-speed air entrainment, an integral part of air-breathing propulsion systems. Although mixed compression inlet geometry can significantly improve entrainment efficiency, numerous Shock Wave-Boundary Layer Interactions (SWBLIs) are generated in this configuration. The boundary layer must therefore develop through multiple regions of adverse pressure gradient, causing it to thicken, and, in severe cases, separate. The associated increase in unsteadiness can have adverse effects on downstream engine hardware. The most severe consequence of these interactions is the increased aerodynamic blockage generated by the thickened boundary layer. If the increase is sufficient, it can choke the flow, causing inlet unstart, and resulting in a loss of thrust and high transient forces on the engine, airframe, and aircraft occupants. The potentially severe consequences associated with SWBLIs require flow control to ensure proper operation. Traditionally, boundary layer bleed has been used to control the interaction. Although this method is effective, it has inherent efficiency penalties. Localized Arc Filament Plasma Actuators (LAFPAs) are designed to generate perturbations for flow control. Natural flow instabilities act to amplify certain perturbations, allowing the LAFPAs to control the flow with minimal power input. LAFPAs also have the flexibility to maintain control over a variety of operating conditions. This work seeks to examine the effectiveness of LAFPAs as a separation control method for an oblique, impinging SWBLI. The low frequency unsteadiness in the reflected shock was thought to be the natural manifestation of a Kelvin-Helmholtz instability in the shear layer above the separation region. The LAFPAs were therefore placed upstream of the interaction to allow their perturbations to convect to the receptivity region (near the shear layer origin

  3. Surface and interfacial interactions of multilayer graphitic structures with local environment

    International Nuclear Information System (INIS)

    Mazzocco, R.; Robinson, B.J.; Rabot, C.; Delamoreanu, A.; Zenasni, A.; Dickinson, J.W.; Boxall, C.; Kolosov, O.V.

    2015-01-01

    In order to exploit the potential of graphene in next-generation devices, such as supercapacitors, rechargeable batteries, displays and ultrathin sensors, it is crucial to understand the solvent interactions with the graphene surface and interlayers, especially where the latter may be in competition with the former, in the medium of application deployment. In this report, we combine quartz crystal microbalance (QCM) and ultrasonic force microscopy methods to investigate the changes in the film–substrate and film–environment interfaces of graphene and graphene oxide films, produced by diverse scalable routes, in both polar (deionised water) and non-polar (dodecane) liquid and vapour environments. In polar liquid environments, we observe nanobubble adsorption/desorption on the graphene film corresponding to a surface coverage of up to 20%. As no comparable behaviour is observed for non-polar environment, we conclude that nanobubble formation is directly due to the hydrophobic nature of graphene with direct consequences for electrode structures immersed in electrolyte solutions. The amount of water adsorbed by the graphene films was found to vary considerably from 0.012 monolayers of water per monolayer of reduced graphene oxide to 0.231 monolayers of water per monolayer of carbon diffusion growth graphene. This is supported by direct nanomechanical mapping of the films immersed in water where an increased variation of local stiffness suggests water propagation within the film and/or between the film and substrate. Transferred film thickness calculations performed for QCM, atomic force microscopy topography and optical transmission measurements, returns results an order of magnitude larger (46 ± 1 layers) than Raman spectroscopy (1 - 2 graphene layers) on pristine pre-transferred films due to contamination during transfer and possible turbostratic structures of large areas. - Highlights: • Exploring interaction of graphene films with polar and nonpolar liquids

  4. New procedure to synthesize silver nanoparticles and their interaction with local anesthetics

    Directory of Open Access Journals (Sweden)

    Mocanu A

    2013-10-01

    Full Text Available Aurora Mocanu,1 Roxana Diana Pasca,1 Gheorghe Tomoaia,2 Corina Garbo,1 Petre T Frangopol,1 Ossi Horovitz,1 Maria Tomoaia-Cotisel11Chemical Engineering Department, Babes-Bolyai University, 2Orthopedic Department, Iuliu Hatieganu University of Medicine and Pharmacy, Cluj-Napoca, RomaniaAbstract: Silver nanoparticles (AgNPs were prepared in aqueous colloid dispersions by the reduction of Ag+ with glucose in alkaline medium. Tetraethyl orthosilicate and l-asparagine were added as stabilizers of NPs. The AgNPs were characterized, and their interaction with three local anesthetics (procaine, dibucaine, or tetracaine was investigated. Optical spectra show the characteristic absorption band of AgNPs, due to surface plasmon resonance. Modifications in the position and shape of this band reflect the self-assembly of metal NPs mediated by anesthetic molecules and the progress in time of the aggregation process. Zeta-potential measuring was applied in order to characterize the electrostatic stability of the NPs. The size and shape of the AgNPs, as well as the features of the assemblies formed by their association in the presence of anesthetics, were evidenced by transmission electron microscopy images. Atomic force microscopy images showed the characteristics of the films of AgNPs deposited on glass support. The effect of the anesthetics could be described in terms of electrostatic forces between the negatively charged AgNPs and the anesthetic molecules, existing also in their cationic form at the working pH. But also hydrophobic and hydrogen bonding interactions between the coated nanoparticles and anesthetics molecular species should be considered.Keywords: self-assembled nanostructures, UV-vis spectra, TEM, AFM, zeta potential

  5. Localization of electrons by electron-electron interaction in an Anderson model

    International Nuclear Information System (INIS)

    Ritala, R.K.; Kurkijaervi, J.

    1981-01-01

    We study the effect of attractive Hubbard interaction on disordered electron system. We map the interacting system back to noninteracting one and determine self-consistently the disorder change due to interaction in the system. (author)

  6. Bam35 tectivirus intraviral interaction map unveils new function and localization of phage ORFan proteins.

    Science.gov (United States)

    Berjón-Otero, Mónica; Lechuga, Ana; Mehla, Jitender; Uetz, Peter; Salas, Margarita; Redrejo-Rodríguez, Modesto

    2017-07-26

    function.Comprehensive protein-protein interaction (PPI) analysis among viral proteins can eventually disclose biological mechanisms and thus provide new insights into protein function unattainable by studying proteins one by one. Here we comprehensively describe intraviral PPIs among tectivirus Bam35 proteins using multi-vector yeast two-hybrid screening that was further supported by co-immunoprecipitation assays and protein structural models. This approach allowed us to propose new functions for known proteins and hypothesize on the biological role localization within the viral particle of some viral ORFan proteins that will be helpful for understanding the biology of Gram-positive tectivirus. Copyright © 2017 American Society for Microbiology.

  7. Propagation of the state change induced by external forces in local interactions

    Science.gov (United States)

    Lu, Jianjun; Tokinaga, Shozo

    2016-10-01

    This paper analyses the propagation of the state changes of agents that are induced by external forces applied to a plane. In addition, we propose two models for the behavior of the agents placed on a lattice plane, both of which are affected by local interactions. We first assume that agents are allowed to move to another site to maximise their satisfaction. Second, we utilise a model in which the agents choose activities on each site. The results show that the migration (activity) patterns of agents in both models achieve stability without any external forces. However, when we apply an impulsive external force to the state of the agents, we then observe the propagation of the changes in the agents' states. Using simulation studies, we show the conditions for the propagation of the state changes of the agents. We also show the propagation of the state changes of the agents allocated in scale-free networks and discuss the estimation of the agents' decisions in real state changes. Finally, we discuss the estimation of the agents' decisions in real state temporal changes using economic and social data from Japan and the United States.

  8. Unravelling the local structure of topological crystalline insulators using hyperfine interactions

    CERN Multimedia

    Phenomena emerging from relativistic electrons in solids have become one the main topical subjects in condensed matter physics. Among a wealth of intriguing new phenomena, several classes of materials have emerged including graphene, topological insulators and Dirac semi-metals. This project is devoted to one such class of materials, in which a subtle distortion of the crystalline lattice drives a material through different topological phases: Z$_{2}$ topological insulator (Z$_{2}$-TI), topological crystalline insulator (TCI), or ferroelectric Rashba semiconductor (FERS). We propose to investigate the local structure of Pb$_{1-x}$Sn$_{x}$Te and Ge$_{1-x}$Sn$_{x}$Te (with $\\textit{x}$ from 0 to 1) using a combination of experimental techniques based on hyperfine interactions: emission Mössbauer spectroscopy (eMS) and perturbed angular correlation spectroscopy (PAC). In particular, we propose to study the effect of composition ($\\textit{x}$ in Pb$_{1-x}$Sn$_{x}$Te and Ge$_{1-x}$Sn$_{x}$Te) on: \\\\ \\\\(1) the mag...

  9. Anomalous van der Waals-Casimir interactions on graphene: A concerted effect of temperature, retardation, and non-locality

    Science.gov (United States)

    Ambrosetti, Alberto; Silvestrelli, Pier Luigi

    2018-04-01

    Dispersion forces play a major role in graphene, largely influencing adhesion of adsorbate moieties and stabilization of functional multilayered structures. However, the reliable prediction of dispersion interactions on graphene up to the relevant ˜10 nm scale is an extremely challenging task: in fact, electromagnetic retardation effects and the highly non-local character of π electrons can imply sizeable qualitative variations of the interaction with respect to known pairwise approaches. Here we address both issues, determining the finite-temperature van der Waals (vdW)-Casimir interaction for point-like and extended adsorbates on graphene, explicitly accounting for the non-local dielectric permittivity. We find that temperature, retardation, and non-locality play a crucial role in determining the actual vdW scaling laws and the stability of both atomic and larger molecular adsorbates. Our results highlight the importance of these effects for a proper description of systems of current high interest, such as graphene interacting with biomolecules, and self-assembly of complex nanoscale structures. Due to the generality of our approach and the observed non-locality of other 2D materials, our results suggest non-trivial vdW interactions from hexagonal mono-layered materials from group 14 of the periodic table, to transition metal dichalcogenides.

  10. Interactions between global processes and local health problems. A human ecology approach to health among indigenous groups in the Amazon

    Directory of Open Access Journals (Sweden)

    Maj-Lis Follér

    Full Text Available This article deals with methodological issues and how to link global processes - social and ecological - with environmental changes and human health in local communities. The discussion concerns how interdisciplinary approaches can help us find tools to develop new knowledge. Scientific knowledge and local knowledge are not seen as opposite epistemological forms, but as socially and culturally constructed. Power and social legitimacy have to be included when analyzing how to deal with the interaction between global processes and local environmental change and the health/disease interface.

  11. Local hybrid functionals with orbital-free mixing functions and balanced elimination of self-interaction error

    International Nuclear Information System (INIS)

    Silva, Piotr de; Corminboeuf, Clémence

    2015-01-01

    The recently introduced density overlap regions indicator (DORI) [P. de Silva and C. Corminboeuf, J. Chem. Theory Comput. 10(9), 3745–3756 (2014)] is a density-dependent scalar field revealing regions of high density overlap between shells, atoms, and molecules. In this work, we exploit its properties to construct local hybrid exchange-correlation functionals aiming at balanced reduction of the self-interaction error. We show that DORI can successfully replace the ratio of the von Weizsäcker and exact positive-definite kinetic energy densities, which is commonly used in mixing functions of local hybrids. Additionally, we introduce several semi-empirical parameters to control the local and global admixture of exact exchange. The most promising of our local hybrids clearly outperforms the underlying semi-local functionals as well as their global hybrids

  12. Air-sea exchange and gas-particle partitioning of polycyclic aromatic hydrocarbons over the northwestern Pacific Ocean: Role of East Asian continental outflow.

    Science.gov (United States)

    Wu, Zilan; Lin, Tian; Li, Zhongxia; Jiang, Yuqing; Li, Yuanyuan; Yao, Xiaohong; Gao, Huiwang; Guo, Zhigang

    2017-11-01

    We measured 15 parent polycyclic aromatic hydrocarbons (PAHs) in atmosphere and water during a research cruise from the East China Sea (ECS) to the northwestern Pacific Ocean (NWP) in the spring of 2015 to investigate the occurrence, air-sea gas exchange, and gas-particle partitioning of PAHs with a particular focus on the influence of East Asian continental outflow. The gaseous PAH composition and identification of sources were consistent with PAHs from the upwind area, indicating that the gaseous PAHs (three-to five-ring PAHs) were influenced by upwind land pollution. In addition, air-sea exchange fluxes of gaseous PAHs were estimated to be -54.2-107.4 ng m -2 d -1 , and was indicative of variations of land-based PAH inputs. The logarithmic gas-particle partition coefficient (logK p ) of PAHs regressed linearly against the logarithmic subcooled liquid vapor pressure (logP L 0 ), with a slope of -0.25. This was significantly larger than the theoretical value (-1), implying disequilibrium between the gaseous and particulate PAHs over the NWP. The non-equilibrium of PAH gas-particle partitioning was shielded from the volatilization of three-ring gaseous PAHs from seawater and lower soot concentrations in particular when the oceanic air masses prevailed. Modeling PAH absorption into organic matter and adsorption onto soot carbon revealed that the status of PAH gas-particle partitioning deviated more from the modeling K p for oceanic air masses than those for continental air masses, which coincided with higher volatilization of three-ring PAHs and confirmed the influence of air-sea exchange. Meanwhile, significant linear regressions between logK p and logK oa (logK sa ) for PAHs were observed for continental air masses, suggesting the dominant effect of East Asian continental outflow on atmospheric PAHs over the NWP during the sampling campaign. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Similarity-transformed perturbation theory on top of truncated local coupled cluster solutions: Theory and applications to intermolecular interactions

    Energy Technology Data Exchange (ETDEWEB)

    Azar, Richard Julian, E-mail: julianazar2323@berkeley.edu; Head-Gordon, Martin, E-mail: mhg@cchem.berkeley.edu [Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California and Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720 (United States)

    2015-05-28

    Your correspondents develop and apply fully nonorthogonal, local-reference perturbation theories describing non-covalent interactions. Our formulations are based on a Löwdin partitioning of the similarity-transformed Hamiltonian into a zeroth-order intramonomer piece (taking local CCSD solutions as its zeroth-order eigenfunction) plus a first-order piece coupling the fragments. If considerations are limited to a single molecule, the proposed intermolecular similarity-transformed perturbation theory represents a frozen-orbital variant of the “(2)”-type theories shown to be competitive with CCSD(T) and of similar cost if all terms are retained. Different restrictions on the zeroth- and first-order amplitudes are explored in the context of large-computation tractability and elucidation of non-local effects in the space of singles and doubles. To accurately approximate CCSD intermolecular interaction energies, a quadratically growing number of variables must be included at zeroth-order.

  14. Localization and interaction effects in GaAs/AlGaAs heterostructures modified by 4He-ion implantation

    International Nuclear Information System (INIS)

    Taboryski, R.; Veje, E.; Lindelof, P.E.

    1990-01-01

    Magnetoresistance is used to study localization and interaction in the 2-dimensional electron layer of 4 He-ion implanted GaAs/AlGaAs modulation doped heterostructures. At very low magnetic fields weak localization magnetoresistance can be fitted to theory, thereby determining the diffusion constant and the phase relaxation rate. An unexpected saturation of the phase relaxation rate at low temperature was found to have an interesting relation to mobility and sample size. In the magnetic field range, where the cyclotron radius becomes of the order of the mean free path, the magnetoresistance was related to the effect of electron-electron interaction. By comparison of the magnetoresistance at different implantation doses, we extracted a remnant quantum correction to the conductivity, which has no earlier been noticed. In samples with two subbands populated interband scattering is observed to cause spin-orbit effects in the weak localization magnetoresistance. (orig.)

  15. Interaction, coalescence, and collapse of localized patterns in a quasi-one-dimensional system of interacting particles

    Science.gov (United States)

    Dessup, Tommy; Coste, Christophe; Saint Jean, Michel

    2017-01-01

    We study the path toward equilibrium of pairs of solitary wave envelopes (bubbles) that modulate a regular zigzag pattern in an annular channel. We evidence that bubble pairs are metastable states, which spontaneously evolve toward a stable single bubble. We exhibit the concept of topological frustration of a bubble pair. A configuration is frustrated when the particles between the two bubbles are not organized in a modulated staggered row. For a nonfrustrated (NF) bubble pair configuration, the bubbles interaction is attractive, whereas it is repulsive for a frustrated (F) configuration. We describe a model of interacting solitary wave that provides all qualitative characteristics of the interaction force: It is attractive for NF systems and repulsive for F systems and decreases exponentially with the bubbles distance. Moreover, for NF systems, the bubbles come closer and eventually merge as a single bubble, in a coalescence process. We also evidence a collapse process, in which one bubble shrinks in favor of the other one, overcoming an energetic barrier in phase space. This process is relevant for both NF systems and F systems. In NF systems, the coalescence prevails at low temperature, whereas thermally activated jumps make the collapse prevail at high temperature. In F systems, the path toward equilibrium involves a collapse process regardless of the temperature.

  16. How do Greenhouse Gases Warm the Ocean? Investigation of the Response of the Ocean Thermal Skin Layer to Air-Sea Surface Heat Fluxes.

    Science.gov (United States)

    Wong, E.; Minnett, P. J.

    2016-12-01

    There is much evidence that the ocean is heating due to an increase in concentrations of greenhouse gases (GHG) in the atmosphere from human activities. GHGs absorbs infrared (IR) radiation and re-emits the radiation back to the ocean's surface which is subsequently absorbed resulting in a rise in the ocean heat content. However, the incoming longwave radiation, LWin, is absorbed within the top micrometers of the ocean's surface, where the thermal skin layer (TSL) exists and does not directly heat the upper few meters of the ocean. We are therefore motivated to investigate the physical mechanism between the absorption of IR radiation and its effect on heat transfer at the air-sea boundary. The hypothesis is that since heat lost through the air-sea interface is controlled by the TSL, which is directly influenced by the absorption and emission of IR radiation, the heat flow through the TSL adjusts to maintain the surface heat loss, and thus modulates the upper ocean heat content. This hypothesis is investigated through utilizing clouds to represent an increase in LWin and analyzing retrieved TSL vertical profiles from a shipboard IR spectrometer from two research cruises. The data is limited to night-time, no precipitation and low winds of heat from the absorption of the cloud infrared irradiance back into the atmosphere through processes such as evaporation. Instead, we observe the surplus energy, from absorbing increasing levels of LWin, adjusts the curvature of the TSL such that there is a lower gradient at the interface between the TSL and the mixed layer. The release of heat stored within the mixed layer is therefore hindered while the additional energy within the TSL is cycled back into the atmosphere. This results in heat beneath the TSL, which is a product of the absorption of solar radiation during the day, to be retained and cause an increase in upper ocean heat content.

  17. Accounting for observation uncertainties in an evaluation metric of low latitude turbulent air-sea fluxes: application to the comparison of a suite of IPSL model versions

    Science.gov (United States)

    Servonnat, Jérôme; Găinuşă-Bogdan, Alina; Braconnot, Pascale

    2017-09-01

    Turbulent momentum and heat (sensible heat and latent heat) fluxes at the air-sea interface are key components of the whole energetic of the Earth's climate. The evaluation of these fluxes in the climate models is still difficult because of the large uncertainties associated with the reference products. In this paper we present an objective metric accounting for reference uncertainties to evaluate the annual cycle of the low latitude turbulent fluxes of a suite of IPSL climate models. This metric consists in a Hotelling T 2 test between the simulated and observed field in a reduce space characterized by the dominant modes of variability that are common to both the model and the reference, taking into account the observational uncertainty. The test is thus more severe when uncertainties are small as it is the case for sea surface temperature (SST). The results of the test show that for almost all variables and all model versions the model-reference differences are not zero. It is not possible to distinguish between model versions for sensible heat and meridional wind stress, certainly due to the large observational uncertainties. All model versions share similar biases for the different variables. There is no improvement between the reference versions of the IPSL model used for CMIP3 and CMIP5. The test also reveals that the higher horizontal resolution fails to improve the representation of the turbulent surface fluxes compared to the other versions. The representation of the fluxes is further degraded in a version with improved atmospheric physics with an amplification of some of the biases in the Indian Ocean and in the intertropical convergence zone. The ranking of the model versions for the turbulent fluxes is not correlated with the ranking found for SST. This highlights that despite the fact that SST gradients are important for the large-scale atmospheric circulation patterns, other factors such as wind speed, and air-sea temperature contrast play an

  18. Human Sirtuin 2 Localization, Transient Interactions, and Impact on the Proteome Point to Its Role in Intracellular Trafficking.

    Science.gov (United States)

    Budayeva, Hanna G; Cristea, Ileana M

    2016-10-01

    Human sirtuin 2 (SIRT2) is an NAD + -dependent deacetylase that primarily functions in the cytoplasm, where it can regulate α-tubulin acetylation levels. SIRT2 is linked to cancer progression, neurodegeneration, and infection with bacteria or viruses. However, the current knowledge about its interactions and the means through which it exerts its functions has remained limited. Here, we aimed to gain a better understanding of its cellular functions by characterizing SIRT2 subcellular localization, the identity and relative stability of its protein interactions, and its impact on the proteome of primary human fibroblasts. To assess the relative stability of SIRT2 interactions, we used immunoaffinity purification in conjunction with both label-free and metabolic labeling quantitative mass spectrometry. In addition to the expected associations with cytoskeleton proteins, including its known substrate TUBA1A, our results reveal that SIRT2 specifically interacts with proteins functioning in membrane trafficking, secretory processes, and transcriptional regulation. By quantifying their relative stability, we found most interactions to be transient, indicating a dynamic SIRT2 environment. We discover that SIRT2 localizes to the ER-Golgi intermediate compartment (ERGIC), and that this recruitment requires an intact ER-Golgi trafficking pathway. Further expanding these findings, we used microscopy and interaction assays to establish the interaction and coregulation of SIRT2 with liprin-β1 scaffolding protein (PPFiBP1), a protein with roles in focal adhesions disassembly. As SIRT2 functions may be accomplished via interactions, enzymatic activity, and transcriptional regulation, we next assessed the impact of SIRT2 levels on the cellular proteome. SIRT2 knockdown led to changes in the levels of proteins functioning in membrane trafficking, including some of its interaction partners. Altogether, our study expands the knowledge of SIRT2 cytoplasmic functions to define a

  19. Multi-Locality Based Local and Symbiotic Computing for Interactively fast On-Demand Weather Forecasting for Small Regions, Short Durations, and Very High-Resolutions

    OpenAIRE

    Fjukstad, Bård

    2014-01-01

    Papers 1, 3 and 4 are not available in Munin: 1: Bård Fjukstad, Tor-Magne Stien Hagen, Daniel Stødle, Phuong Hoai Ha, John Markus Bjørndalen, and Otto Anshus: ‘Interactive Weather Simulation and Visualization on a Display Wall with Many-Core Compute Nodes’, in K. Jónasson (ed.): PARA 2010, Part I, LNCS 7133, pp. 142–151, 2012, © Springer-Verlag Berlin Heidelberg 3: Bård Fjukstad, John Markus Bjørndalen and Otto Anshus: ‘Accurate Weather Forecasting Through Locality Based Collaborative Computi...

  20. High resolution modelling of aerosol dispersion regimes during the CAPITOUL field experiment: from regional to local scale interactions

    Directory of Open Access Journals (Sweden)

    B. Aouizerats

    2011-08-01

    Full Text Available High resolution simulation of complex aerosol particle evolution and gaseous chemistry over an atmospheric urban area is of great interest for understanding air quality and processes. In this context, the CAPITOUL (Canopy and Aerosol Particle Interactions in the Toulouse Urban Layer field experiment aims at a better understanding of the interactions between the urban dynamics and the aerosol plumes. During a two-day Intensive Observational Period, a numerical model experiment was set up to reproduce the spatial distribution of specific particle pollutants, from the regional scales and the interactions between different cities, to the local scales with specific turbulent structures. Observations show that local dynamics depends on the day-regime, and may lead to different mesoscale dynamical structures. This study focuses on reproducing these fine scale dynamical structures, and investigate the impact on the aerosol plume dispersion. The 500-m resolution simulation manages to reproduce convective rolls at local scale, which concentrate most of the aerosol particles and can locally affect the pollutant dispersion and air quality.

  1. Interaction quench dynamics in the Kondo model in the presence of a local magnetic field.

    Science.gov (United States)

    Heyl, M; Kehrein, S

    2010-09-01

    In this work we investigate the quench dynamics in the Kondo model on the Toulouse line in the presence of a local magnetic field. It is shown that this setup can be realized by either applying the local magnetic field directly or by preparing the system in a macroscopically spin-polarized initial state. In the latter case, the magnetic field results from a subtlety in applying the bosonization technique where terms that are usually referred to as finite-size corrections become important in the present non-equilibrium setting. The transient dynamics are studied by analyzing exact analytical results for the local spin dynamics. The timescale for the relaxation of the local dynamical quantities turns out to be exclusively determined by the Kondo scale. In the transient regime, one observes damped oscillations in the local correlation functions with a frequency set by the magnetic field.

  2. Modulational instability and nano-scale energy localization in ferromagnetic spin chain with higher order dispersive interactions

    International Nuclear Information System (INIS)

    Kavitha, L.; Mohamadou, A.; Parasuraman, E.; Gopi, D.; Akila, N.; Prabhu, A.

    2016-01-01

    The nonlinear localization phenomena in ferromagnetic spin lattices have attracted a steadily growing interest and their existence has been predicted in a wide range of physical settings. We investigate the onset of modulational instability of a plane wave in a discrete ferromagnetic spin chain with physically significant higher order dispersive octupole–dipole and dipole–dipole interactions. We derive the discrete nonlinear equation of motion with the aid of Holstein–Primakoff (H–P) transformation combined with Glauber's coherent state representation. We show that the discrete ferromagnetic spin dynamics is governed by an entirely new discrete NLS model with complex coefficients not reported so far. We report the study of modulational instability (MI) of the ferromagnetic chain with long range dispersive interactions both analytically in the frame work of linear stability analysis and numerically by means of molecular dynamics (MD) simulations. Our numerical simulations explore that the analytical predictions correctly describe the onset of instability. It is found that the presence of the various exchange and dispersive higher order interactions systematically favors the local gathering of excitations and thus supports the growth of high amplitude, long-lived discrete breather (DB) excitations. We analytically compute the strongly localized odd and even modes. Further, we employ the Jacobi elliptic function method to solve the nonlinear evolution equation and an exact propagating bubble-soliton solution is explored. - Highlights: • Higher order dispersive interactions plays significant role in ferromagnetic spin chain. • The energy localization is studied both analytically and numerically. • The existence of DBs are studied under the effect of higher order dispersive interaction.

  3. Exact Local Correlations and Full Counting Statistics for Arbitrary States of the One-Dimensional Interacting Bose Gas

    Science.gov (United States)

    Bastianello, Alvise; Piroli, Lorenzo; Calabrese, Pasquale

    2018-05-01

    We derive exact analytic expressions for the n -body local correlations in the one-dimensional Bose gas with contact repulsive interactions (Lieb-Liniger model) in the thermodynamic limit. Our results are valid for arbitrary states of the model, including ground and thermal states, stationary states after a quantum quench, and nonequilibrium steady states arising in transport settings. Calculations for these states are explicitly presented and physical consequences are critically discussed. We also show that the n -body local correlations are directly related to the full counting statistics for the particle-number fluctuations in a short interval, for which we provide an explicit analytic result.

  4. A study of topological quantum phase transition and Majorana localization length for the interacting helical liquid system

    International Nuclear Information System (INIS)

    Dey, Dayasindhu; Saha, Sudip Kumar; Deo, P. Singha; Kumar, Manoranjan; Sarkar, Sujit

    2017-01-01

    We study the topological quantum phase transition and also the nature of this transition using the density matrix renormalization group method. We observe the existence of topological quantum phase transition for repulsive interaction, however this phase is more stable for the attractive interaction. The length scale dependent study shows many new and important results and we show explicitly that the major contribution to the excitation comes from the edge of the system when the system is in the topological state. We also show the dependence of Majorana localization length for various values of chemical potential. (author)

  5. Sensitivity of the CSR self-interaction to the local longitudinal charge concentration of an electron bunch

    CERN Document Server

    Li, R

    2001-01-01

    Recent measurements of the coherent synchrotron radiation (CSR) effects indicated that the observed emittance growth and energy modulation due to the orbit-curvature-induced bunch self-interaction are sometimes bigger than predictions based on Gaussian longitudinal charge distributions. In this paper, by performing a model study, we show both analytically and numerically that when the longitudinal bunch charge distribution involves concentration of charges in a small fraction of the bunch length, enhancement of the CSR self-interaction beyond the Gaussian prediction may occur. The level of this enhancement is sensitive to the level of the local charge concentration.

  6. On the non-local obstruction to interacting higher spins in flat space

    Energy Technology Data Exchange (ETDEWEB)

    Taronna, Massimo [Physique Théorique et Mathématique,Université Libre de Bruxelles and International Solvay Institutes,ULB-Campus Plaine CP231, 1050 Brussels (Belgium)

    2017-05-04

    Owing to a renewed interest in flat space higher spin gauge theories, in this note we provide further details and clarifications on the results presented in arXiv:1107.5843 and arXiv: 1209.5755, which investigated their locality properties. Focusing, for simplicity, on quartic couplings with one of the external legs having non-zero integer spin (which can be considered as a prototype for Weinberg-type arguments), we review the appearance of 1/◻ non-localities. In particular, we emphasise that it appears to be not possible to eliminate all of the aforementioned non-localities in the general quartic Noether procedure solution with a judicious choice of coupling constants and spectrum. We also discuss the light-cone gauge fixing in d=4, and argue that the non-local obstruction discussed in the covariant language cannot be avoided using light-cone gauge formalism.

  7. Maintenance of asymmetric cellular localization of an auxin transport protein through interaction with the actin cytoskeleton

    Science.gov (United States)

    Muday, G. K.

    2000-01-01

    In shoots, polar auxin transport is basipetal (that is, from the shoot apex toward the base) and is driven by the basal localization of the auxin efflux carrier complex. The focus of this article is to summarize the experiments that have examined how the asymmetric distribution of this protein complex is controlled and the significance of this polar distribution. Experimental evidence suggests that asymmetries in the auxin efflux carrier may be established through localized secretion of Golgi vesicles, whereas an attachment of a subunit of the efflux carrier to the actin cytoskeleton may maintain this localization. In addition, the idea that this localization of the efflux carrier may control both the polarity of auxin movement and more globally regulate developmental polarity is explored. Finally, evidence indicating that the gravity vector controls auxin transport polarity is summarized and possible mechanisms for the environmentally induced changes in auxin transport polarity are discussed.

  8. Off-shell t-matrix for an exponential potential with non-local core interaction

    International Nuclear Information System (INIS)

    Sarkar, S.B.; Talukdar, B.; Chattarji, D.

    1975-01-01

    The wave function approach of Van Leeuwen and Reiner to the t-matrix is generalized to the case of a non-local potential. The transition matrix element for this potential is obtained. The results are used to compute the s-wave part of the t-matrix for a non-local square well potential combined with an outside exponential potential. (Auth.)

  9. Intracellular Localization and Cellular Factors Interaction of HTLV-1 and HTLV-2 Tax Proteins: Similarities and Functional Differences

    Directory of Open Access Journals (Sweden)

    Maria Grazia Romanelli

    2011-05-01

    Full Text Available Human T-lymphotropic viruses type 1 (HTLV-1 and type 2 (HTLV-2 present very similar genomic structures but HTLV-1 is more pathogenic than HTLV-2. Is this difference due to their transactivating Tax proteins, Tax-1 and Tax-2, which are responsible for viral and cellular gene activation? Do Tax-1 and Tax-2 differ in their cellular localization and in their interaction pattern with cellular factors? In this review, we summarize Tax-1 and Tax-2 structural and phenotypic properties, their interaction with factors involved in signal transduction and their localization-related behavior within the cell. Special attention will be given to the distinctions between Tax-1 and Tax-2 that likely play an important role in their transactivation activity.

  10. Promoting interactions between local climate change mitigation, sustainable energy development, and rural development policies in Lithuania

    International Nuclear Information System (INIS)

    Streimikiene, Dalia; Baležentis, Tomas; Kriščiukaitienė, Irena

    2012-01-01

    Lithuania has developed several important climate change mitigation policy documents however there are no attempts in Lithuania to develop local climate change mitigation policies or to decentralize climate change mitigation policy. Seeking to achieve harmonization and decentralization of climate change mitigation and energy policies in Lithuania the framework for local climate change mitigation strategy need to be developed taking into account requirements, targets and measures set in national climate change mitigation and energy policy documents. The paper will describe how national climate change mitigation and energy policies can be implemented via local energy and climate change mitigation plans. The aim of the paper is to analyze the climate change mitigation policy and its relationship with policies promoting sustainable energy development in Lithuania and to present a framework for local approaches to climate change mitigation in Lithuania, in the context of the existing national and supra-national energy, climate change, and rural development policies. - Highlights: ► The framework for local energy action plans is offered. ► The structural support possibilities are assessed with respect to the Lithuanian legal base. ► The proposals are given for further promotion of sustainable energy at the local level.

  11. Effect of interactions on the localization of a Bose-Einstein condensate in a quasi-periodic lattice

    OpenAIRE

    Lye, J. E.; Fallani, L.; Fort, C.; Guarrera, V.; Modugno, M.; Wiersma, D. S.; Inguscio, M.

    2006-01-01

    The transport properties of a Bose-Einstein condensate in a 1D incommensurate bichromatic lattice are investigated both theoretically and experimentally. We observe a blockage of the center of mass motion with low atom number, and a return of motion when the atom number is increased. Solutions of the Gross-Pitaevskii equation show how the localization due to the quasi-disorder introduced by the incommensurate bichromatic lattice is affected by the interactions.

  12. Spacetime from locality of interactions in deformations of special relativity: The example of κ -Poincaré Hopf algebra

    Science.gov (United States)

    Carmona, J. M.; Cortés, J. L.; Relancio, J. J.

    2018-03-01

    A new proposal for the notion of spacetime in a relativistic generalization of special relativity based on a modification of the composition law of momenta is presented. Locality of interactions is the principle which defines the spacetime structure for a system of particles. The formulation based on κ -Poincaré Hopf algebra is shown to be contained in this framework as a particular example.

  13. Using interactive modeling tools to engage with, inform and empower decision making in local communities of landscape managers

    DEFF Research Database (Denmark)

    Christensen, Andreas Aagaard

    During the last decade digital modelling tools for environmental impact assessment have become increasingly interactive, agile and user-oriented. This has made it possible to implement models in situ, using them in live scenario situations with local stakeholders. As a result modelling tools......- and long term environmental impact of landscape management. This opens up a number of questions regarding the status and consequence of scientific data and modelled impact estimates as compared to locally held knowledge and expertise. It also opens up questions regarding how the injection of modelling...... for modelling the effect of agricultural land use decisions on nitrogen emission to the environment at landscape scales. Recently Danish authorities proposed to shift the scale of regulation from national regulatory instruments to a more local level to better fit relevant socio-political and agro-environmental...

  14. Stability of stationary states of non-local equations with singular interaction potentials

    KAUST Repository

    Fellner, Klemens; Raoul, Gaë l

    2011-01-01

    repulsive interaction potentials we show the stability of stationary states of uniformly bounded solutions under a convexity condition.Finally, we present numerical simulations to illustrate our results. © 2010 Elsevier Ltd.

  15. Effect of coulomb interaction on Anderson localization; Effet de l'interaction coulombienne sur la localisation d'Anderson dans des systemes de basses dimensions

    Energy Technology Data Exchange (ETDEWEB)

    Waintal, X

    1999-09-10

    We study the quantum mechanics of interacting particles in a disordered system, and in particular, what happens to Anderson localisation when interaction is taken into account. In the first part,one looks at the excited states of two particles in one dimension. For this model, it has been shown (Shepelyansky 1994) that a local repulsive interaction can partially destroy Anderson localisation. Here, we show that this model has similarities with the three-dimensional Anderson model at the metal-insulator transition. In particular, the maximum of rigidity obtained in the spectral statistics correspond to some intermediary statistics that cannot be described by random matrix theory neither by a Poisson statistics. The wave functions show a multifractal behaviour and the spreading of the center of mass of a wave packet is logarithmic in time. The second part deals with the ground state of a finite density of spinless fermions in two dimensions. After the scaling theory of localisation, it was commonly accepted that there was no metal in two dimensions. This idea has been challenged by the observation of a metal-insulator transition in low density electron gas (Kravchenko et al. 1994). We propose a scenario in which a metallic phase occurs between the Anderson insulator and the pinned Wigner crystal. This intermediate phase is characterized by an alignment of the local currents flowing in the system. (author)

  16. The effect of six-point one-particle reducible local interactions in the dual fermion approach

    International Nuclear Information System (INIS)

    Katanin, A A

    2013-01-01

    We formulate the dual fermion approach for strongly correlated electronic systems in terms of the lattice and dual effective interactions, obtained by using the covariation splitting formula. This allows us to consider the effect of six-point one-particle reducible interactions, which are usually neglected by the dual fermion approach. We show that the consideration of one-particle reducible six-point (as well as higher order) vertices is crucially important for the diagrammatic consistency of this approach. In particular, the relation between the dual and lattice self-energy, derived in the dual fermion approach, implicitly accounts for the effect of the diagrams, containing six-point and higher order local one-particle reducible vertices, and should be applied with caution, if these vertices are neglected. Apart from that, the treatment of the self-energy feedback is also modified by six-point and higher order vertices; these vertices are also important to account for some non-local corrections to the lattice self-energy, which have the same order in the local four-point vertices as the diagrams usually considered in the approach. These observations highlight an importance of six-point and higher order vertices in the dual fermion approach, and call for the development of new schemes of treatment of non-local fluctuations, which are based on one-particle irreducible quantities. (paper)

  17. Inquiry in interaction: How local adaptations of curricula shape classroom communities

    Science.gov (United States)

    Enyedy, Noel; Goldberg, Jennifer

    2004-11-01

    In this study, we seek a better understanding of how individuals and their daily interactions shape and reshape social structures that constitute a classroom community. Moreover, we provide insight into how discourse and classroom interactions shape the nature of a learning community, as well as which aspects of the classroom culture may be consequential for learning. The participants in this study include two teachers who are implementing a new environmental science program, Global Learning through Observation to Benefit the Environment (GLOBE), and interacting with 54 children in an urban middle school. Both qualitative and quantitative data are analyzed and presented. To gain a better understanding of the inquiry teaching within classroom communities, we compare and contrast the discourse and interactions of the two teachers during three parallel environmental science lessons. The focus of our analysis includes (1) how the community identifies the object or goal of its activity; and (2) how the rights, rules, and roles for members are established and inhabited in interaction. Quantitative analyses of student pre- and posttests suggest greater learning for students in one classroom over the other, providing support for the influence of the classroom community and interactional choices of the teacher on student learning. Implications of the findings from this study are discussed in the context of curricular design, professional development, and educational reform. ? 2004 Wiley Periodicals, Inc. J Res Sci Teach 41: 905-935, 2004.

  18. Local magnetic divertor for control of the plasma--limiter interaction in a tokamak

    International Nuclear Information System (INIS)

    Zweben, S.J.; Liewer, P.C.; Gould, R.W.

    1984-01-01

    An experiment is described in which plasma flow to a tokamak limiter is controlled through the use of a local toroidal divertor coil mounted inside the limiter itself. This coil produces a local perturbed field B/sub C/ approximately equal to the local unperturbed toroidal field B/sub T/approx. =3 kG, such that when B/sub C/ adds to B/sub T/ the field lines move into the limiter and the local plasma flow to it increases by a factor as great as 1.6, and when B/sub C/ subtracts from B/sub T/ the field lines move away from the limiter and the local plasma flow to it decreases by as much as a factor of 4. A simple theoretical model is used to interpret these results. Since these changes occur without significantly affecting global plasma confinement, such a control scheme may be useful for optimizing the performance of pumped limiters

  19. New periodic wave solutions, localized excitations and their interaction for (2+1)-dimensional Burgers equation

    International Nuclear Information System (INIS)

    Ma Hongcai; Ge Dongjie; Yu Yaodong

    2008-01-01

    Based on the Bäcklund method and the multilinear variable separation approach (MLVSA), this paper nds a general solution including two arbitrary functions for the (2+1)-dimensional Burgers equations. Then a class of new doubly periodic wave solutions for (2+1)-dimensional Burgers equations is obtained by introducing appropriate Jacobi elliptic functions, Weierstrass elliptic functions and their combination in the general solutions (which contains two arbitrary functions). Two types of limit cases are considered. Firstly, taking one of the moduli to be unity and the other zero, it obtains particular wave (called semi-localized) patterns, which is periodic in one direction, but localized in the other direction. Secondly, if both moduli are tending to 1 as a limit, it derives some novel localized excitations (two-dromion solution). (general)

  20. An interactive local flattening operator to support digital investigations on artwork surfaces.

    Science.gov (United States)

    Pietroni, Nico; Massimiliano, Corsini; Cignoni, Paolo; Scopigno, Roberto

    2011-12-01

    Analyzing either high-frequency shape detail or any other 2D fields (scalar or vector) embedded over a 3D geometry is a complex task, since detaching the detail from the overall shape can be tricky. An alternative approach is to move to the 2D space, resolving shape reasoning to easier image processing techniques. In this paper we propose a novel framework for the analysis of 2D information distributed over 3D geometry, based on a locally smooth parametrization technique that allows us to treat local 3D data in terms of image content. The proposed approach has been implemented as a sketch-based system that allows to design with a few gestures a set of (possibly overlapping) parameterizations of rectangular portions of the surface. We demonstrate that, due to the locality of the parametrization, the distortion is under an acceptable threshold, while discontinuities can be avoided since the parametrized geometry is always homeomorphic to a disk. We show the effectiveness of the proposed technique to solve specific Cultural Heritage (CH) tasks: the analysis of chisel marks over the surface of a unfinished sculpture and the local comparison of multiple photographs mapped over the surface of an artwork. For this very difficult task, we believe that our framework and the corresponding tool are the first steps toward a computer-based shape reasoning system, able to support CH scholars with a medium they are more used to. © 2011 IEEE

  1. Air-sea exchange of gaseous mercury in the tropical coast (Luhuitou fringing reef) of the South China Sea, the Hainan Island, China.

    Science.gov (United States)

    Ci, Zhijia; Zhang, Xiaoshan; Wang, Zhangwei

    2016-06-01

    The air-sea exchange of gaseous mercury (mainly Hg(0)) in the tropical ocean is an important part of the global Hg biogeochemical cycle, but the related investigations are limited. In this study, we simultaneously measured Hg(0) concentrations in surface waters and overlaying air in the tropical coast (Luhuitou fringing reef) of the South China Sea (SCS), Hainan Island, China, for 13 days on January-February 2015. The purpose of this study was to explore the temporal variation of Hg(0) concentrations in air and surface waters, estimate the air-sea Hg(0) flux, and reveal their influencing factors in the tropical coastal environment. The mean concentrations (±SD) of Hg(0) in air and total Hg (THg) in waters were 2.34 ± 0.26 ng m(-3) and 1.40 ± 0.48 ng L(-1), respectively. Both Hg(0) concentrations in waters (53.7 ± 18.8 pg L(-1)) and Hg(0)/THg ratios (3.8 %) in this study were significantly higher than those of the open water of the SCS in winter. Hg(0) in waters usually exhibited a clear diurnal variation with increased concentrations in daytime and decreased concentrations in nighttime, especially in cloudless days with low wind speed. Linear regression analysis suggested that Hg(0) concentrations in waters were positively and significantly correlated to the photosynthetically active radiation (PAR) (R (2) = 0.42, p sea Hg(0) fluxes were estimated to be 1.73 ± 1.25 ng m(-2) h(-1) with a large range between 0.01 and 6.06 ng m(-2) h(-1). The high variation of Hg(0) fluxes was mainly attributed to the greatly temporal variation of wind speed.

  2. Temporal and spatial variations of oceanic pCO2 and air-sea CO2 flux in th Greenland Sea and the Barents Sea

    International Nuclear Information System (INIS)

    Nakaoka, Shin-Ichiro; Aoki, Shuji; Nakazawa, Takakiyo; Yoshikawa-Inoue, Hisayuki

    2006-01-01

    In order to elucidate the seasonal and inter annual variations of oceanic CO 2 uptake in the Greenland Sea and the Barents Sea, the partial pressure of CO 2 in the surface ocean (pCO 2 sea ) was measured in all seasons between 1992 and 2001. We derived monthly varying relationships between pCO 2 sea and sea surface temperature (SST) and combined them with the SST data from the NCEP/NCAR reanalysis to determine pCO 2 sea and air-sea CO 2 flux in these seas. The pCO 2 sea values were normalized to the year 1995 by assuming that pCO 2 sea increased at the same growth rate (1.5 μatm/yr) of the pCO 2 in the air (pCO 2 air ) between 1992 and 2001. In 1995, the annual net air-sea CO 2 fluxes were evaluated to be 52 ± 20 gC/m 2 /yr in the Greenland Sea and 46 ± 18 gC/m 2 /yr in the Barents Sea. The CO 2 flux into the ocean reached its maximum in winter and minimum in summer. The wind speed and (delta)pCO 2 (=pCO 2 air -pCO 2 sea ) exerted a greater influence on the seasonal variation than the sea ice coverage. The annual CO 2 uptake examined in this study (70-80 deg N, 20 deg W-40 deg E) was estimated to be 0.050 ± 0.020 GtC/yr in 1995. The inter annual variation in the annual CO 2 uptake was found to be positively correlated with the North Atlantic Oscillation Index (NAOI) via wind strength but negatively correlated with (delta)pCO 2 and the sea ice coverage. The present results indicate that the variability in wind speed and sea ice coverage play a major role, while that in (delta)pCO 2 plays a minor role, in determining the interannual variation of CO 2 uptake in this area

  3. Interannual variations of net community production and air-sea CO2 flux from winter to spring in the western subarctic North Pacific

    International Nuclear Information System (INIS)

    Midorikawa, Takashi; Ogawa, Kan; Nemoto, Kazuhiro; Kamiya, Hitomi; Umeda, Takafumi; Hiraishi, Naotaka; Wada, Akira; Ishii, Masao

    2003-01-01

    The role of spring biological production for the air-sea CO 2 flux was quantified in the Western Subarctic Gyre (48 deg N, 165 deg E), where the vertical profile of temperature revealed the existence of a temperature minimum (Tmin) layer in the North Pacific. The vertical profiles of temperature, salinity, dissolved oxygen, nutrients and dissolved inorganic carbon, DIC, in the upper water column were significantly variable year by year in spring, 1996-2000. Correspondingly, surface seawater at this site in spring was supersaturated with CO 2 in 1997, 1999 and 2000, but was undersaturated in 1996 and 1998. The concentrations of DIC and nutrients in the winter mixed layer were estimated from those in the Tmin layer in spring with a correction for particle decomposition based on the apparent oxygen utilization. The net community production (NCP) and air-sea CO 2 flux from winter to spring were calculated from the vertically integrated deficits of DIC and nutrients in the upper water column between the two seasons. The calculation of the carbon budget indicated large interannual variations of NCP (0-13 mmol/m 2 /d) and CO 2 efflux (4-16 mmol/m 2 /d) for this period. The CO 2 efflux was generally low in the year when NCP was high. The close coupling between biological production and CO 2 efflux suggested the important role of the changes in the mixed-layer depth, as a key process controlling both processes, especially of the timing, so that a decrease in the mixed-layer depth could result in the activation of biological production. The early biological consumption of the surface DIC concentration could shorten the period for acting as a source for atmospheric CO 2 and depress the CO 2 efflux in the Western Subarctic Gyre from winter to spring in 1996 and 1998. On the contrary, in 1997, persistently deep vertical mixing until late spring could suppress the biological activity and give rise to long-lasting CO 2 efflux

  4. Assessing the acceptability and usability of an interactive serious game in aiding treatment decisions for patients with localized prostate cancer.

    Science.gov (United States)

    Reichlin, Lindsey; Mani, Nithya; McArthur, Kara; Harris, Amy M; Rajan, Nithin; Dacso, Clifford C

    2011-01-12

    Men diagnosed with localized prostate cancer face a potentially life-altering treatment decision that can be overwhelming. Enhancing patient knowledge through education can significantly reduce feelings of uncertainty while simultaneously increasing confidence in decision making. Serious games have been shown in other populations to increase health knowledge and assist with the health decision-making process. We developed an interactive serious game, Time After Time, which translates evidence-based treatment outcome data into an accessible and understandable format that men can utilize in their prostate cancer treatment decision-making process. The game specifically aims to raise men's awareness and understanding of the impact of health-related quality of life issues associated with the major treatment options and to enrich their conversations with their health care providers. This study determined the acceptability and usability of the alpha version of Time After Time, an interactive decision aid for men diagnosed with localized prostate cancer, in order to inform future iterations of the serious game. The study employed a mixed methods approach to assess the acceptability and usability of the Time After Time serious game using qualitative focus groups and a quantitative Likert scale survey. A total of 13 men who had already completed treatment for localized prostate cancer completed the survey and participated in focus group meetings. The majority of the study participants rated Time After Time as an appropriate decision tool for localized prostate cancer and verified that it meets its goals of increasing focus on side effects and generating questions for the patient's health care team. However, participants also expressed concerns about game usability and the diversity of information covered regarding treatment options and potential treatment outcomes. Serious games are a promising approach to health education and decision support for older men. Participants

  5. Phase precession through acceleration of local theta rhythm: a biophysical model for the interaction between place cells and local inhibitory neurons.

    Science.gov (United States)

    Castro, Luísa; Aguiar, Paulo

    2012-08-01

    Phase precession is one of the most well known examples within the temporal coding hypothesis. Here we present a biophysical spiking model for phase precession in hippocampal CA1 which focuses on the interaction between place cells and local inhibitory interneurons. The model's functional block is composed of a place cell (PC) connected with a local inhibitory cell (IC) which is modulated by the population theta rhythm. Both cells receive excitatory inputs from the entorhinal cortex (EC). These inputs are both theta modulated and space modulated. The dynamics of the two neuron types are described by integrate-and-fire models with conductance synapses, and the EC inputs are described using non-homogeneous Poisson processes. Phase precession in our model is caused by increased drive to specific PC/IC pairs when the animal is in their place field. The excitation increases the IC's firing rate, and this modulates the PC's firing rate such that both cells precess relative to theta. Our model implies that phase coding in place cells may not be independent from rate coding. The absence of restrictive connectivity constraints in this model predicts the generation of phase precession in any network with similar architecture and subject to a clocking rhythm, independently of the involvement in spatial tasks.

  6. Investigating local network interactions underlying first- and second-order processing.

    Science.gov (United States)

    Ellemberg, Dave; Allen, Harriet A; Hess, Robert F

    2004-01-01

    We compared the spatial lateral interactions for first-order cues to those for second-order cues, and investigated spatial interactions between these two types of cues. We measured the apparent modulation depth of a target Gabor at fixation, in the presence and the absence of horizontally flanking Gabors. The Gabors' gratings were either added to (first-order) or multiplied with (second-order) binary 2-D noise. Apparent "contrast" or modulation depth (i.e., the perceived difference between the high and low luminance regions for the first-order stimulus, or between the high and low contrast regions for the second-order stimulus) was measured with a modulation depth-matching paradigm. For each observer, the first- and second-order Gabors were equated for apparent modulation depth without the flankers. Our results indicate that at the smallest inter-element spacing, the perceived reduction in modulation depth is significantly smaller for the second-order than for the first-order stimuli. Further, lateral interactions operate over shorter distances and the spatial frequency and orientation tuning of the suppression effect are broader for second- than first-order stimuli. Finally, first- and second-order information interact in an asymmetrical fashion; second-order flankers do not reduce the apparent modulation depth of the first-order target, whilst first-order flankers reduce the apparent modulation depth of the second-order target.

  7. Multimodal Interaction in Ambient Intelligence Environments Using Speech, Localization and Robotics

    Science.gov (United States)

    Galatas, Georgios

    2013-01-01

    An Ambient Intelligence Environment is meant to sense and respond to the presence of people, using its embedded technology. In order to effectively sense the activities and intentions of its inhabitants, such an environment needs to utilize information captured from multiple sensors and modalities. By doing so, the interaction becomes more natural…

  8. Localized excitations in discrete nonlinear Schrodinger systems: Effects of nonlocal dispersive interactions and noise

    DEFF Research Database (Denmark)

    Rasmussen, Kim; Christiansen, Peter Leth; Johansson, Magnus

    1998-01-01

    A one-dimensional discrete nonlinear Schrodinger (DNLS) model with the power dependence, r(-s) on the distance r, of dispersive interactions is proposed. The stationary states of the system are studied both analytically and numerically. Two kinds of trial functions, exp-like and sech-like are exp...

  9. Predator-prey interaction reveals local effects of high-altitude insect migration

    Science.gov (United States)

    High-altitude nocturnal insect migrations represent significant pulses of resources, yet are difficult to study and poorly understood. Predator-prey interactions, specifically migratory moth consumption by high-flying bats, potentially reveal flows of migratory insects across a landscape. In North...

  10. Local versus nonlocal αα interactions in a 3α description of 12C

    International Nuclear Information System (INIS)

    Suzuki, Y.; Matsumura, H.; Orabi, M.; Fujiwara, Y.; Descouvemont, P.; Theeten, M.; Baye, D.

    2008-01-01

    Local αα potentials reproducing the αα phase shifts fail to describe 12 C as a 3α system. Nonlocal αα potentials that renormalize the energy-dependent kernel of the resonating group method allow interpreting simultaneously the ground state and 0 2 + resonance of 12 C as 3α states. A comparison with fully microscopic calculations provides a measure of the importance of three-cluster exchanges in those states

  11. Pellet-plasma interaction: Local disturbances caused by pellet ablation in tokamaks

    International Nuclear Information System (INIS)

    Lengyel, L.L.

    1989-01-01

    The local disturbance amplitudes caused by ablating pellets in tokamaks are computed in the framework of a magnetohydrodynamic model supplemented by the neutral gas plasma shielding ablation model. The model computes, for a given number of pellet particles locally deposited, the time histories of the ablatant cloud parameters, such as cloud radius, cloud length, electron density, temperature and cloud beta, at a succession of magnetic flux surfaces. The cloud radius thus determined may be fed back into the ablation model, thus adjusting the effect of the shielding cloud on the ablation rate. The model is applied to typical plasma parameter ranges of existing and planned tokamaks. The results show that the ablating pellets may cause massive local disturbances in tokamaks, depending upon the number of particles locally deposited. The peaks of these disturbances are of a spike nature, lasting only a few microseconds (Alfven time-scale). The characteristic decay time of the 'quasi-steady' disturbance values that characterize the after-spike period is of the order of several milliseconds (hydrodynamic time-scale). The peak electron density values may be as high as 10 23 to 10 25 m -3 , with the associated beta peaks exceeding unity. The 'quasi-steady' values of the electron density and the ablatant beta may be of the order of 10 22 to 10 24 m -3 and unity, respectively. Furthermore, the results show the strong dependence of the ablation rate on the dynamic characteristics of the ablatant cloud surrounding the pellet. (author). 25 refs, 6 figs, 2 tabs

  12. KINEMATIC CLASSIFICATIONS OF LOCAL INTERACTING GALAXIES: IMPLICATIONS FOR THE MERGER/DISK CLASSIFICATIONS AT HIGH-z

    International Nuclear Information System (INIS)

    Hung, Chao-Ling; Larson, Kirsten L.; Sanders, D. B.; Rich, Jeffrey A.; Yuan, Tiantian; Kewley, Lisa J.; Casey, Caitlin M.; Smith, Howard A.; Hayward, Christopher C.

    2015-01-01

    The classification of galaxy mergers and isolated disks is key for understanding the relative importance of galaxy interactions and secular evolution during the assembly of galaxies. Galaxy kinematics as traced by emission lines have been used to suggest the existence of a significant population of high-z star-forming galaxies consistent with isolated rotating disks. However, recent studies have cautioned that post-coalescence mergers may also display disk-like kinematics. To further investigate the robustness of merger/disk classifications based on kinematic properties, we carry out a systematic classification of 24 local (U)LIRGs spanning a range of morphologies: from isolated spiral galaxies, ongoing interacting systems, to fully merged remnants. We artificially redshift the Wide Field Spectrograph observations of these local (U)LIRGs to z = 1.5 to make a realistic comparison with observations at high-z, and also to ensure that all galaxies have the same spatial sampling of ∼900 pc. Using both kinemetry-based and visual classifications, we find that the reliability of kinematic classification shows a strong trend with the interaction stage of galaxies. Mergers with two nuclei and tidal tails have the most distinct kinematics compared to isolated disks, whereas a significant population of the interacting disks and merger remnants are indistinguishable from isolated disks. The high fraction of mergers displaying disk-like kinematics reflects the complexity of the dynamics during galaxy interactions. Additional merger indicators such as morphological properties traced by stars or molecular gas are required to further constrain the merger/disk classifications at high-z

  13. The effect of interacting dark energy on local measurements of the Hubble constant

    International Nuclear Information System (INIS)

    Odderskov, Io; Baldi, Marco; Amendola, Luca

    2016-01-01

    In the current state of cosmology, where cosmological parameters are being measured to percent accuracy, it is essential to understand all sources of error to high precision. In this paper we present the results of a study of the local variations in the Hubble constant measured at the distance scale of the Coma Cluster, and test the validity of correcting for the peculiar velocities predicted by gravitational instability theory. The study is based on N-body simulations, and includes models featuring a coupling between dark energy and dark matter, as well as two ΛCDM simulations with different values of σ 8 . It is found that the variance in the local flows is significantly larger in the coupled models, which increases the uncertainty in the local measurements of the Hubble constant in these scenarios. By comparing the results from the different simulations, it is found that most of the effect is caused by the higher value of σ 8 in the coupled cosmologies, though this cannot account for all of the additional variance. Given the discrepancy between different estimates of the Hubble constant in the universe today, cosmological models causing a greater cosmic variance is something that we should be aware of.

  14. The effect of interacting dark energy on local measurements of the Hubble constant

    Energy Technology Data Exchange (ETDEWEB)

    Odderskov, Io [Department of Physics and Astronomy, University of Aarhus, Ny Munkegade 120, Aarhus C (Denmark); Baldi, Marco [Dipartimento di Fisica e Astronomia, Alma Mater Studiorum Università di Bologna, viale Berti Pichat 6/2, I-40127, Bologna (Italy); Amendola, Luca, E-mail: isho07@phys.au.dk, E-mail: marco.baldi5@unibo.it, E-mail: l.amendola@thphys.uni-heidelberg.de [Institut für Theoretische Physik, Ruprecht-Karls-Universität Heidelberg, Philosophenweg 16, 69120 Heidelberg (Germany)

    2016-05-01

    In the current state of cosmology, where cosmological parameters are being measured to percent accuracy, it is essential to understand all sources of error to high precision. In this paper we present the results of a study of the local variations in the Hubble constant measured at the distance scale of the Coma Cluster, and test the validity of correcting for the peculiar velocities predicted by gravitational instability theory. The study is based on N-body simulations, and includes models featuring a coupling between dark energy and dark matter, as well as two ΛCDM simulations with different values of σ{sub 8}. It is found that the variance in the local flows is significantly larger in the coupled models, which increases the uncertainty in the local measurements of the Hubble constant in these scenarios. By comparing the results from the different simulations, it is found that most of the effect is caused by the higher value of σ{sub 8} in the coupled cosmologies, though this cannot account for all of the additional variance. Given the discrepancy between different estimates of the Hubble constant in the universe today, cosmological models causing a greater cosmic variance is something that we should be aware of.

  15. Interaction of nucleosome assembly proteins abolishes nuclear localization of DGK{zeta} by attenuating its association with importins

    Energy Technology Data Exchange (ETDEWEB)

    Okada, Masashi; Hozumi, Yasukazu [Department of Anatomy and Cell Biology, Yamagata University School of Medicine, Yamagata 990-9585 (Japan); Ichimura, Tohru [Department of Chemistry, Graduate School of Sciences and Engineering, Tokyo Metropolitan University, Hachioji 192-0397 (Japan); Tanaka, Toshiaki; Hasegawa, Hiroshi; Yamamoto, Masakazu; Takahashi, Nobuya [Department of Anatomy and Cell Biology, Yamagata University School of Medicine, Yamagata 990-9585 (Japan); Iseki, Ken [Department of Emergency and Critical Care Medicine, Yamagata University School of Medicine, Yamagata 990-9585 (Japan); Yagisawa, Hitoshi [Laboratory of Biological Signaling, Graduate School of Life Science, University of Hyogo, Hyogo 678-1297 (Japan); Shinkawa, Takashi; Isobe, Toshiaki [Department of Chemistry, Graduate School of Sciences and Engineering, Tokyo Metropolitan University, Hachioji 192-0397 (Japan); Goto, Kaoru, E-mail: kgoto@med.id.yamagata-u.ac.jp [Department of Anatomy and Cell Biology, Yamagata University School of Medicine, Yamagata 990-9585 (Japan)

    2011-12-10

    Diacylglycerol kinase (DGK) is involved in the regulation of lipid-mediated signal transduction through the metabolism of a second messenger diacylglycerol. Of the DGK family, DGK{zeta}, which contains a nuclear localization signal, localizes mainly to the nucleus but translocates to the cytoplasm under pathological conditions. However, the detailed mechanism of translocation and its functional significance remain unclear. To elucidate these issues, we used a proteomic approach to search for protein targets that interact with DGK{zeta}. Results show that nucleosome assembly protein (NAP) 1-like 1 (NAP1L1) and NAP1-like 4 (NAP1L4) are identified as novel DGK{zeta} binding partners. NAP1Ls constitutively shuttle between the nucleus and the cytoplasm in transfected HEK293 cells. The molecular interaction of DGK{zeta} and NAP1Ls prohibits nuclear import of DGK{zeta} because binding of NAP1Ls to DGK{zeta} blocks import carrier proteins, Qip1 and NPI1, to interact with DGK{zeta}, leading to cytoplasmic tethering of DGK{zeta}. In addition, overexpression of NAP1Ls exerts a protective effect against doxorubicin-induced cytotoxicity. These findings suggest that NAP1Ls are involved in a novel molecular basis for the regulation of nucleocytoplasmic shuttling of DGK{zeta} and provide a clue to examine functional significance of its translocation under pathological conditions.

  16. Local anesthetics: interaction with human erythrocyte membranes as studied by 1H and 31P nuclear magnetic resonance

    International Nuclear Information System (INIS)

    Fraceto, Leonardo Fernandes; Paula, Eneida de

    2004-01-01

    The literature carries many theories about the mechanism of action of local anesthetics (LA). We can highlight those focusing the direct effect of LA on the sodium channel protein and the ones that consider the interaction of anesthetic molecules with the lipid membrane phase. The interaction between local anesthetics and human erythrocyte membranes has been studied by 1 H and 31 P nuclear magnetic resonance spectroscopy. It was found that lidocaine (LDC) and benzocaine (BZC) bind to the membranes, increase the mobility of the protons of the phospholipids acyl chains, and decrease the mobility and/or change the structure of the polar head groups. The results indicate that lidocaine molecules are inserted across the polar and liquid interface of the membrane, establishing both electrostatic (charged form) and hydrophobic (neutral form) interactions. Benzocaine locates itself a little deeper in the bilayer, between the interfacial glycerol region and the hydrophobic core. These changes in mobility or conformation of membrane lipids could affect the Na + -channel protein insertion in the bilayer, stabilizing it in the inactivated state, thus causing anesthesia. (author)

  17. The relative role of dispersal and local interactions for alpine plant community diversity under simulated climate warming

    Energy Technology Data Exchange (ETDEWEB)

    Klanderud, K.; Totland, Oe. [Norwegian Univ. of Life Science, Dept. of Ecology and Natural Resource Management, Aas (Norway)

    2007-08-15

    Most studies on factors determining diversity are conducted in temperate or warm regions, whereas studies in climatically harsh and low productivity areas, such as alpine regions, are rare. We examined the relative roles of seed availability and different biotic and abiotic factors for the diversity of an alpine plant community in southern Norway. Furthermore, because climate warming is predicted to be an important driver of alpine species diversity, we assessed how the relative impacts of dispersal and local interactions on diversity might change under experimental warming (open top chambers, OTCs). Addition of seeds from 27 regional species increased community diversity. The establishment of the species was negatively related both to the diversity of the existing system and the cover of the abundant dwarf shrub Dryas octopetala. These results show that both species dispersal limitation and local biotic interactions are important factors for alpine plant community diversity. Despite relatively harsh environmental conditions and low productivity, competition from the resident vegetation appeared to have a greater role for species establishment and diversity than facilitation and experimental warming. Higher temperature appeared to increase the negative relationship between resident species diversity and species establishment. This may suggest that climate warming can increase the role of interspecific competition for alpine plant community structure, and thus alter the long-term effects of biotic interactions on diversity. (au)

  18. Weak localization and electron-electron interaction in modulation doped GaAs/AlGaAs heterostructures

    International Nuclear Information System (INIS)

    Taboryski, R.; Lindelof, P.E.

    1990-01-01

    The first heterostructure wafer only had one electronic subband at the GaAs/AlGaAs interface populated. Weak localization magnetoresistance was interpreted by a theory valid to relatively high magnetic fields and also valid for electrons with a long mean free path. The adjustable parameter in fitting the magnetoresistance was in each case the phasebreaking relaxation time, which could then subsequently be plotted as a function of temperature. The temperature dependence of the phasebreaking rate could be interpreted on the basic of existing theories, but the residual relaxation rate at the lowest temperature remains so far unexplained. Already at low magnetic fields the weak localization magnetoresistance saturates, indicating a complete quench of weak localization. We find that the value of saturation (i.e. the total weak localization at the appropriate temperature) was smaller than predicted by the existing theories. At magnetic fields of the order of the inverse electron mobility, a quadratic magnetoresistance show up in our experiments. This quadratic magnetoresistance corresponds to corrections to the conductivity of the order of e 2 /h. Whereas we find that the temperature dependence of this conductivity correction is well in agreement with predicted effects of electron-electron interaction, the dependence on mobility, which we can measure via our ion implantation, is larger than any existing theory predicts, yet still in the ballpark of the conductance quantum. (orig./BHO)

  19. Local moments, exchange interactions, and magnetic order in Mn-doped LaFe2Si2 alloys

    International Nuclear Information System (INIS)

    Turek, I.; Divis, M.; Niznansky, D.; Vejpravova, J.

    2007-01-01

    Formation of local magnetic moments in the intermetallic compound LaFe 2 Si 2 due to doping by a few at% of Mn has been investigated by theoretical and experimental tools. While a number of low-temperature experiments prove appearance of non-zero magnetic moments due to the Mn doping, the measured 57 Fe Moessbauer spectra rule out sizable local moments of Fe atoms. This conclusion is in agreement with results of first-principles electronic structure calculations that yield non-vanishing moments only on Mn atoms. The calculated Mn-Mn exchange interactions are of both signs which indicate a magnetically frustrated ground state, probably with a spin-glass-like arrangement of the Mn moments

  20. Arctic Ocean CO2 uptake: an improved multiyear estimate of the air-sea CO2 flux incorporating chlorophyll a concentrations

    Science.gov (United States)

    Yasunaka, Sayaka; Siswanto, Eko; Olsen, Are; Hoppema, Mario; Watanabe, Eiji; Fransson, Agneta; Chierici, Melissa; Murata, Akihiko; Lauvset, Siv K.; Wanninkhof, Rik; Takahashi, Taro; Kosugi, Naohiro; Omar, Abdirahman M.; van Heuven, Steven; Mathis, Jeremy T.

    2018-03-01

    We estimated monthly air-sea CO2 fluxes in the Arctic Ocean and its adjacent seas north of 60° N from 1997 to 2014. This was done by mapping partial pressure of CO2 in the surface water (pCO2w) using a self-organizing map (SOM) technique incorporating chlorophyll a concentration (Chl a), sea surface temperature, sea surface salinity, sea ice concentration, atmospheric CO2 mixing ratio, and geographical position. We applied new algorithms for extracting Chl a from satellite remote sensing reflectance with close examination of uncertainty of the obtained Chl a values. The overall relationship between pCO2w and Chl a was negative, whereas the relationship varied among seasons and regions. The addition of Chl a as a parameter in the SOM process enabled us to improve the estimate of pCO2w, particularly via better representation of its decline in spring, which resulted from biologically mediated pCO2w reduction. As a result of the inclusion of Chl a, the uncertainty in the CO2 flux estimate was reduced, with a net annual Arctic Ocean CO2 uptake of 180 ± 130 Tg C yr-1. Seasonal to interannual variation in the CO2 influx was also calculated.

  1. Three-body models of the 6ΛΛHe and 9ΛBe hypernuclei with non-local interactions

    International Nuclear Information System (INIS)

    Theeten, M.; Baye, D.; Descouvemont, P.

    2005-01-01

    A three-body model involving non-local interactions is developed in configuration space. It is based on a hyperspherical-harmonics expansion and the Lagrange-mesh method. The 6 ΛΛ He and 9 Λ Be hypernuclei are studied as three-body αΛΛ and ααΛ systems. Recently proposed quark-model based ΛN and ΛΛ interactions are used. A non-local Λα interaction is obtained by folding the ΛN interaction with a Gaussian α density. Various phenomenological αα interactions are employed. The results agree within 1 keV with recent Faddeev calculations in momentum space. Energies and radii of 6 ΛΛ He and 9 Λ Be are compared with a purely local model. The B(E2) between the 9 Λ Be bound states is also calculated. The role of non-locality is discussed

  2. An Amphiphysin-Like Domain in Fus2p Is Required for Rvs161p Interaction and Cortical Localization

    Directory of Open Access Journals (Sweden)

    Richard A. Stein

    2016-02-01

    Full Text Available Cell–cell fusion fulfils essential roles in fertilization, development and tissue repair. In the budding yeast, Saccharomyces cerevisiae, fusion between two haploid cells of opposite mating type generates the diploid zygote. Fus2p is a pheromone-induced protein that regulates cell wall removal during mating. Fus2p shuttles from the nucleus to localize at the shmoo tip, bound to Rvs161p, an amphiphysin. However, Rvs161p independently binds a second amphiphysin, Rvs167p, playing an essential role in endocytosis. To understand the basis of the Fus2p–Rvs161p interaction, we analyzed Fus2p structural domains. A previously described N-terminal domain (NTD is necessary and sufficient to regulate nuclear/cytoplasmic trafficking of Fus2p. The Dbl homology domain (DBH binds GTP-bound Cdc42p; binding is required for cell fusion, but not localization. We identified an approximately 200 amino acid region of Fus2p that is both necessary and sufficient for Rvs161p binding. The Rvs161p binding domain (RBD contains three predicted alpha-helices; structural modeling suggests that the RBD adopts an amphiphysin-like structure. The RBD contains a 13-amino-acid region, conserved with Rvs161p and other amphiphysins, which is essential for binding. Mutations in the RBD, predicted to affect membrane binding, abolish cell fusion without affecting Rvs161p binding. We propose that Fus2p/Rvs161p form a novel heterodimeric amphiphysin required for cell fusion. Rvs161p binding is required but not sufficient for Fus2p localization. Mutations in the C-terminal domain (CTD of Fus2p block localization, but not Rvs161p binding, causing a significant defect in cell fusion. We conclude that the Fus2p CTD mediates an additional, Rvs161p-independent interaction at the shmoo tip.

  3. GPU-based local interaction simulation approach for simplified temperature effect modelling in Lamb wave propagation used for damage detection

    International Nuclear Information System (INIS)

    Kijanka, P; Radecki, R; Packo, P; Staszewski, W J; Uhl, T

    2013-01-01

    Temperature has a significant effect on Lamb wave propagation. It is important to compensate for this effect when the method is considered for structural damage detection. The paper explores a newly proposed, very efficient numerical simulation tool for Lamb wave propagation modelling in aluminum plates exposed to temperature changes. A local interaction approach implemented with a parallel computing architecture and graphics cards is used for these numerical simulations. The numerical results are compared with the experimental data. The results demonstrate that the proposed approach could be used efficiently to produce a large database required for the development of various temperature compensation procedures in structural health monitoring applications. (paper)

  4. Oxygenated volatile organic carbon in the western Pacific convective center: ocean cycling, air-sea gas exchange and atmospheric transport

    Science.gov (United States)

    Schlundt, Cathleen; Tegtmeier, Susann; Lennartz, Sinikka T.; Bracher, Astrid; Cheah, Wee; Krüger, Kirstin; Quack, Birgit; Marandino, Christa A.

    2017-09-01

    A suite of oxygenated volatile organic compounds (OVOCs - acetaldehyde, acetone, propanal, butanal and butanone) were measured concurrently in the surface water and atmosphere of the South China Sea and Sulu Sea in November 2011. A strong correlation was observed between all OVOC concentrations in the surface seawater along the entire cruise track, except for acetaldehyde, suggesting similar sources and sinks in the surface ocean. Additionally, several phytoplankton groups, such as haptophytes or pelagophytes, were also correlated to all OVOCs, indicating that phytoplankton may be an important source of marine OVOCs in the South China and Sulu seas. Humic- and protein-like fluorescent dissolved organic matter (FDOM) components seemed to be additional precursors for butanone and acetaldehyde. The measurement-inferred OVOC fluxes generally showed an uptake of atmospheric OVOCs by the ocean for all gases, except for butanal. A few important exceptions were found along the Borneo coast, where OVOC fluxes from the ocean to the atmosphere were inferred. The atmospheric OVOC mixing ratios over the northern coast of Borneo were relatively high compared with literature values, suggesting that this coastal region is a local hotspot for atmospheric OVOCs. The calculated amount of OVOCs entrained into the ocean seemed to be an important source of OVOCs to the surface ocean. When the fluxes were out of the ocean, marine OVOCs were found to be enough to control the locally measured OVOC distribution in the atmosphere. Based on our model calculations, at least 0.4 ppb of marine-derived acetone and butanone can reach the upper troposphere, where they may have an important influence on hydrogen oxide radical formation over the western Pacific Ocean.

  5. Culture and Local Development: the Interaction of Cultural Heritage and Creative Industries

    OpenAIRE

    Valery Gordin; Marina Matetskaya

    2011-01-01

    The aim of the study is to examine the various forms of interaction between cultural heritage and creative industries to support the development of various types of cultural clusters in St. Petersburg. The study was based on a model, which provides several types of partnership cultural heritage (CH) could have with the creative industries (CI): CH as a “decoration” for the CI, as “content”, as a “brand”, as the creator of the needs. Authors’ classification of cultural clusters in St. Petersbu...

  6. Local Order in the Unfolded State: Conformational Biases and Nearest Neighbor Interactions

    Directory of Open Access Journals (Sweden)

    Siobhan Toal

    2014-07-01

    Full Text Available The discovery of Intrinsically Disordered Proteins, which contain significant levels of disorder yet perform complex biologically functions, as well as unwanted aggregation, has motivated numerous experimental and theoretical studies aimed at describing residue-level conformational ensembles. Multiple lines of evidence gathered over the last 15 years strongly suggest that amino acids residues display unique and restricted conformational preferences in the unfolded state of peptides and proteins, contrary to one of the basic assumptions of the canonical random coil model. To fully understand residue level order/disorder, however, one has to gain a quantitative, experimentally based picture of conformational distributions and to determine the physical basis underlying residue-level conformational biases. Here, we review the experimental, computational and bioinformatic evidence for conformational preferences of amino acid residues in (mostly short peptides that can be utilized as suitable model systems for unfolded states of peptides and proteins. In this context particular attention is paid to the alleged high polyproline II preference of alanine. We discuss how these conformational propensities may be modulated by peptide solvent interactions and so called nearest-neighbor interactions. The relevance of conformational propensities for the protein folding problem and the understanding of IDPs is briefly discussed.

  7. Culture and Local Development: the Interaction of Cultural Heritage and Creative Industries

    Directory of Open Access Journals (Sweden)

    Valery Gordin

    2011-10-01

    Full Text Available The aim of the study is to examine the various forms of interaction between cultural heritage and creative industries to support the development of various types of cultural clusters in St. Petersburg. The study was based on a model, which provides several types of partnership cultural heritage (CH could have with the creative industries (CI: CH as a “decoration” for the CI, as “content”, as a “brand”, as the creator of the needs. Authors’ classification of cultural clusters in St. Petersburg is described, including clusters of cultural heritage, ethnic cultural clusters, the mass-cultural (consumer-oriented cultural clusters, art - incubators. One of the main findings is the low willingness of many public cultural institutions to have any form of interaction with the creative industries. The second group of findings concerned the ability to attract creative industries to provide services for residents of St. Petersburg in cooperation with public institutions of culture. 

  8. Equilibration of a strongly interacting plasma: holographic analysis of local and nonlocal probes

    Directory of Open Access Journals (Sweden)

    Bellantuono Loredana

    2016-01-01

    Full Text Available The relaxation of a strongly coupled plasma towards the hydrodynamic regime is studied by analyzing the evolution of local and nonlocal observables in the holographic approach. The system is driven in an initial anisotropic and far-from equilibrium state through an impulsive time-dependent deformation (quench of the boundary spacetime geometry. Effective temperature and entropy density are related to the position and area of a black hole horizon, which has formed as a consequence of the distortion. The behavior of stress-energy tensor, equal-time correlation functions and Wilson loops of different shapes is examined, and a hierarchy among their thermalization times emerges: probes involving shorter length scales thermalize faster.

  9. DE-FORMALIZATION AND FORMALIZATION OF THE GOVERNMENT AND BUSINESS INTERACTION INSTITUTES AT THE LOCAL LEVEL

    Directory of Open Access Journals (Sweden)

    M.V. Kurbatova

    2008-12-01

    Full Text Available Russia currently faces the time when the new institutions emerge and develop. Thus there is a scientific problem that focuses on the explanation of deviations from institutional planning’s expected results. These deviations serve the purpose of solving current problems and maintaining the economic survival of the certain enterprises. It is especially noticeable at the municipal level where the opposite trends are quite interlaced. The article focuses on the example of Kemerovo region where local authorities derive adjacent institutions with small enterprises. The analysis is using the concept of rules; the extra attention is paid to the matter of regional market institutions foundation and the specifics of small mono-profile towns.

  10. Shear flows at the tokamak edge and their interaction with edge-localized modes

    International Nuclear Information System (INIS)

    Aydemir, A. Y.

    2007-01-01

    Shear flows in the scrape-off layer (SOL) and the edge pedestal region of tokamaks are shown to arise naturally out of transport processes in a magnetohydrodynamic model. In quasi-steady-state conditions, collisional resistivity coupled with a simple bootstrap current model necessarily leads to poloidal and toroidal flows, mainly localized to the edge and SOL. The role of these flows in the grad-B drift direction dependence of the power threshold for the L (low) to H (high) transition, and their effect on core rotation, are discussed. Theoretical predictions based on symmetries of the underlying equations, coupled with computational results, are found to be in agreement with observations in Alcator C-Mod [Phys. Plasmas 12, 056111 (2005)]. The effects of these self-consistent flows on linear peeling/ballooning modes and their nonlinear consequences are also examined

  11. Localized surface plasmon and exciton interaction in silver-coated cadmium sulphide quantum dots

    Energy Technology Data Exchange (ETDEWEB)

    Ghosh, P.; Rustagi, K. C.; Vasa, P.; Singh, B. P., E-mail: bhanuprs@gmail.com [Department of Physics, Indian Institute of Technology Bombay, Mumbai- 400076 (India)

    2015-05-15

    Localized surface plasmon and exciton coupling has been investigated on colloidal solutions of silver-coated CdS nanoparticles (NPs), synthesized by gamma irradiation. Two broad photoluminescence (PL) bands (blue/red) corresponding to band to band and defect state transitions have been observed for the bare and coated samples. In case of bare CdS NPs, the intensity of the red PL peak is about ten times higher than the blue PL peak intensity. However, on coating the CdS NPs with silver, the peak intensity of the blue PL band gets enhanced and becomes equal to that of the red PL band. High-resolution transmission electron microscopic (HRTEM) images adequately demonstrate size distribution of these metal/semiconductor nanocomposites. UV-Vis absorption studies show quantum confinement effect in these semiconductor quantum dot (SQD) systems. Absorption spectrum of silver-coated SQDs shows signature of surface plasmon-exciton coupling which has been theoretically verified.

  12. The Influence of Air-Sea Fluxes on Atmospheric Aerosols During the Summer Monsoon Over the Tropical Indian Ocean

    Science.gov (United States)

    Zavarsky, Alex; Booge, Dennis; Fiehn, Alina; Krüger, Kirstin; Atlas, Elliot; Marandino, Christa

    2018-01-01

    During the summer monsoon, the western tropical Indian Ocean is predicted to be a hot spot for dimethylsulfide emissions, the major marine sulfur source to the atmosphere, and an important aerosol precursor. Other aerosol relevant fluxes, such as isoprene and sea spray, should also be enhanced, due to the steady strong winds during the monsoon. Marine air masses dominate the area during the summer monsoon, excluding the influence of continentally derived pollutants. During the SO234-2/235 cruise in the western tropical Indian Ocean from July to August 2014, directly measured eddy covariance DMS fluxes confirm that the area is a large source of sulfur to the atmosphere (cruise average 9.1 μmol m-2 d-1). The directly measured fluxes, as well as computed isoprene and sea spray fluxes, were combined with FLEXPART backward and forward trajectories to track the emissions in space and time. The fluxes show a significant positive correlation with aerosol data from the Terra and Suomi-NPP satellites, indicating a local influence of marine emissions on atmospheric aerosol numbers.

  13. CONAN—The cruncher of local exchange coefficients for strongly interacting confined systems in one dimension

    DEFF Research Database (Denmark)

    Loft, Niels Jakob Søe; Kristensen, Lasse Bjørn; Thomsen, Anders

    2016-01-01

    We consider a one-dimensional system of particles with strong zero-range interactions. This system can be mapped onto a spin chain of the Heisenberg type with exchange coefficients that depend on the external trap. In this paper, we present an algorithm that can be used to compute these exchange...... coefficients. We introduce an open source code CONAN (Coefficients of One-dimensional N-Atom Networks) which is based on this algorithm. CONAN works with arbitrary external potentials and we have tested its reliability for system sizes up to around 35 particles. As illustrative examples, we consider a harmonic...... trap and a box trap with a superimposed asymmetric tilted potential. For these examples, the computation time typically scales with the number of particles as O(N3.5±0.4). Computation times are around 10 s for N=10 particles and less than 10 min for N=20 particles....

  14. Hydrogen-induced crack interaction and coalescence: the role of local crystallographic texture

    Energy Technology Data Exchange (ETDEWEB)

    Caleyo, F.; Hallen, J. M.; Venegas, V. [ESIQIE, Instituto Politecnico Nacional, Mexico, (Mexico); Baudin, T. [Universite de Paris Sud, Orsay, (France)

    2010-07-01

    Hydrogen induced cracking (HIC) is a big concern in pipeline industry specialized in sour service. The strategies to improve HIC resistance of pipeline steel have not been completely efficient. This study investigated the role of grain orientation in the interaction and coalescence of non-coplanar HIC cracks through experimental analysis. HIC samples of pipeline steels (API 5L X46 and ASME-A106) were studied using automated electron backscatter diffraction (EBSD) and orientation imaging microscopy (OIM). The results showed that the microtexture can play a significant role in the coalescence of closely spaced non-coplanar HIC cracks. It was also found that the presence of cleavage planes and slip systems correctly oriented to the mixed-mode stresses can activate low-resistance transgranular paths along in which cracks can merge. It is demonstrated that crystallographic texture must be considered in developing predictive models for the study of the stepwise propagation of HIC cracking in pipeline steels.

  15. Entanglement in bipartite pure states of an interacting boson gas obtained by local projective measurements

    International Nuclear Information System (INIS)

    Paraan, Francis N. C.; Korepin, Vladimir E.; Molina-Vilaplana, Javier; Bose, Sougato

    2011-01-01

    We quantify the extractable entanglement of excited states of a Lieb-Liniger gas that are obtained from coarse-grained measurements on the ground state in which the boson number in one of two complementary contiguous partitions of the gas is determined. Numerically exact results obtained from the coordinate Bethe ansatz show that the von Neumann entropy of the resulting bipartite pure state increases monotonically with the strength of repulsive interactions and saturates to the impenetrable-boson limiting value. We also present evidence indicating that the largest amount of entanglement can be extracted from the most probable projected state having half the number of bosons in a given partition. Our study points to a fundamental difference between the nature of the entanglement in free-bosonic and free-fermionic systems, with the entanglement in the former being zero after projection, while that in the latter (corresponding to the impenetrable-boson limit) being nonzero.

  16. Numerical study on interaction of local air cooler with stratified hydrogen cloud in a large vessel

    Energy Technology Data Exchange (ETDEWEB)

    Liang, Z. [Atomic Energy of Canada Limited, Chalk River Laboratories, ON K0J 1J0 (Canada); Andreani, M. [Laboratory for Thermal-Hydraulics, Paul Scherrer Institut, 5232 Villigen (Switzerland)

    2012-07-01

    Within the framework of the ERCOSAM project, planning calculations are performed to examine sensitivity parameters that can affect the break-up (erosion) of a helium layer by mitigation devices (i.e., cooler, spray, or Passive Autocatalytic Recombiner - PAR). This paper reports the GOTHIC analysis results for the cooler tests to be performed in the PANDA facility. The cooler elevation and geometry, helium layer thickness, steam distribution in the vessel, and the vessel geometry (inter-connected multi-compartments versus a single volume) on the erosion process as well as the cooling capacity are studied. This analysis is valuable because only a limited number of conditions will be examined in the planned experiments. The study provides a useful understanding of the interaction of a cooler with a stratified atmosphere. (authors)

  17. The Hamburg Ocean-Atmosphere Parameters and Fluxes from Satellite Data (HOAPS): A climatological atlas of satellite-derived air-sea interaction parameters over the world oceans

    Digital Repository Service at National Institute of Oceanography (India)

    Grassl, H.; Jost, V.; Schulz, J.; RameshKumar, M.R.; Bauer, P.; Schluessel, P.

    and the corresponding atmospheric circulation over this region has profound influence on the global weather and climate. In the past, several authors have made important contributions in the form of atlases mostly using ship data (Baumgartner and Reichel, 1975... available to interested users for non-commercial scientific research. For details of how to access the fields see: http:// www.mpimet.mpg.de/Depts/Physik/HOAPS. 1 Chapter I Introduction Oceans play a very important role in the global climate system...

  18. Air-Sea Interactions of Natural Long-Lived Greenhouse Gases (CO2, N2O, CH4) in a Changing Climate

    Digital Repository Service at National Institute of Oceanography (India)

    Bakker, D.C.E.; Bange, H.W.; Gruber, N.; Johannessen, T.; Upstill-Goddard, R.C.; Borges, A.V.; Delille, B.; Loscher, C.R.; Naqvi, S.W.A.; Omar, A.M.; Santana-Casiano, J.M.

    at m o sp h er ic li fe ti m es G as R o le in at m o sp h er ic ch em is tr y O ce an ic co n tr ib u ti o n to co n te m p o ra ry at m o sp h er ic b u d g et Im p ac t o f en v ir o n m en ta l ch an g e o n ai r- se a g as ex ch an g e in th e tw... en ty -fi rs t ce n tu ry G lo b al w ar m in g O ce an ac id ifi ca ti o n O p en o ce an d eo x y g en at io n C o as ta l eu tr o p h ic at io n an d h y p o x ia C O 2 In er t N et o ce an si n k fo r ab o u t 3 0 % o f C O 2 em is si o n s fr o m...

  19. Interaction of Sp1 zinc finger with transport factor in the nuclear localization of transcription factor Sp1

    International Nuclear Information System (INIS)

    Ito, Tatsuo; Kitamura, Haruka; Uwatoko, Chisana; Azumano, Makiko; Itoh, Kohji; Kuwahara, Jun

    2010-01-01

    Research highlights: → Sp1 zinc fingers themselves interact with importin α. → Sp1 zinc finger domains play an essential role as a nuclear localization signal. → Sp1 can be transported into the nucleus in an importin-dependent manner. -- Abstract: Transcription factor Sp1 is localized in the nucleus and regulates the expression of many cellular genes, but the nuclear transport mechanism of Sp1 is not well understood. In this study, we revealed that GST-fused Sp1 protein bound to endogenous importin α in HeLa cells via the Sp1 zinc finger domains, which comprise the DNA binding domain of Sp1. It was found that the Sp1 zinc finger domains directly interacted with a wide range of importin α including the armadillo (arm) repeat domain and the C-terminal acidic domain. Furthermore, it turned out that all three zinc fingers of Sp1 are essential for binding to importin α. Taken together, these results suggest that the Sp1 zinc finger domains play an essential role as a NLS and Sp1 can be transported into the nucleus in an importin-dependent manner even though it possesses no classical NLSs.

  20. Evidence from the Baltic Sea for an enhanced CO{sub 2} air-sea transfer velocity

    Energy Technology Data Exchange (ETDEWEB)

    Kuss, Joachim; Nagel, Klaus; Schneider, Bernd [Baltic Sea Research Institute, Warnemuende (Germany). Dept. of Marine Chemistry

    2004-04-01

    Surface water total CO{sub 2} concentrations (CT) and the CO{sub 2} partial pressure of the surface water and in the atmosphere were measured in the eastern Gotland Sea at approximately monthly intervals during five cruises in the winter of 1999/2000. Taking into account vertical/lateral exchange processes and the decomposition of organic matter, the monthly changes in CT were used to determine CO{sub 2} evasion fluxes. In addition, the CO{sub 2} fluxes were calculated on the basis of the CO{sub 2} partial pressure differences using local wind speed (u) records and different currently applied parametrizations of the gas exchange transfer velocity (k). The latter resulted in substantially lower monthly fluxes that indicated a considerable underestimation of k from the k(u) functions used. To achieve an optimal agreement between the flux calculations and the balance-derived CO{sub 2} fluxes, the coefficients of both a simple quadratic and cubic function k(u) were iterated using a least-squares fitting procedure. The resulting equations, which refer to short-term wind data and to the CO{sub 2} exchange at 20 deg C, were k= (0.45 {+-} 0.10)u{sup 2} and k(0.037 {+-} 0.008)u{sup 3} (k, cm/h; u, m/s) . These yielded higher k values than most of the previously proposed parametrizations. Unfortunately, our data did not allow us to decide whether the quadratic or cubic function is more appropriate to describe the gas exchange dynamics.

  1. Electromagnetic interaction between a rising spherical particle in a conducting liquid and a localized magnetic field

    Science.gov (United States)

    Lyu, Z.; Tran, N.; Boeck, T.; Karcher, C.

    2017-07-01

    Lorentz force velocimetry (LFV) is a non-contact electromagnetic flow measurement technique for electrically conductive liquids. It is based on measuring the flow-induced force acting on an external permanent magnet. Motivated by extending LFV to liquid metal two-phase flow measurement, in a first test we consider the free rising of a non-conductive spherical particle in a thin tube of liquid metal (GaInSn) initially at rest. Here the measured force is due to the displacement flow induced by the rising particle. In this paper, numerical results are presented for three different analytical solutions of flows around a moving sphere under a localized magnetic field. This simplification is made since the hydrodynamic flow is difficult to measure or to compute. The Lorentz forces are compared to experiments. The aim of the present work is to check if our simple numerical model can provide Lorentz forces comparable to the experiments. The results show that the peak values of the Lorentz force from the analytical velocity fields provide us an upper limit to the measurement results. In the case of viscous flow around a moving sphere we recover the typical time-scale of Lorentz force signals.

  2. Enhanced vibronic interaction caused by local lattice symmetry lowering in the (Fe, Mg)As2 ternary system

    Science.gov (United States)

    Pishtshev, A.; Rubin, P.

    2018-04-01

    By means of periodic density functional theory (DFT) electronic structure calculations, we investigate iron-site doping effects in a structural model of bulk FeAs2. Simulations performed within the projector augmented-wave method-Perdew-Burke-Ernzerhof (PBE) generalized gradient approximation (GGA) functional scheme reveal that the impacts of the two stoichiometric substitutions Fe → Mg and Fe → Ni are radically different with respect to the structural and electronic behavior of the dopants. In particular, unlike the Ni dopant, the Mg dopant incorporated in FeAs2 occupies a noncentral equilibrium position characterized by an off-center displacement from the reference higher-symmetry position. Analysis of the respective electron and vibrational factors allows us to explain this result in terms of the local pseudo Jahn-Teller effect (pJTE). On the basis of DFT calculations, we deduce which electron orbitals and lattice vibrational modes are appropriate for promoting the local instability at the origin of the pJTE. Quantitative evaluations of the pJTE parameters performed within the polyatomic formalism of an effective tight-binding model show that it is just the enhanced vibronic interaction in the Mg-[FeAs6] cluster that is responsible for the local lattice symmetry breaking.

  3. Stability of strong species interactions resist the synergistic effects of local and global pollution in kelp forests.

    Directory of Open Access Journals (Sweden)

    Laura J Falkenberg

    Full Text Available Foundation species, such as kelp, exert disproportionately strong community effects and persist, in part, by dominating taxa that inhibit their regeneration. Human activities which benefit their competitors, however, may reduce stability of communities, increasing the probability of phase-shifts. We tested whether a foundation species (kelp would continue to inhibit a key competitor (turf-forming algae under moderately increased local (nutrient and near-future forecasted global pollution (CO(2. Our results reveal that in the absence of kelp, local and global pollutants combined to cause the greatest cover and mass of turfs, a synergistic response whereby turfs increased more than would be predicted by adding the independent effects of treatments (kelp absence, elevated nutrients, forecasted CO(2. The positive effects of nutrient and CO(2 enrichment on turfs were, however, inhibited by the presence of kelp, indicating the competitive effect of kelp was stronger than synergistic effects of moderate enrichment of local and global pollutants. Quantification of physicochemical parameters within experimental mesocosms suggests turf inhibition was likely due to an effect of kelp on physical (i.e. shading rather than chemical conditions. Such results indicate that while forecasted climates may increase the probability of phase-shifts, maintenance of intact populations of foundation species could enable the continued strength of interactions and persistence of communities.

  4. Interactions between the invasive Burmese python, Python bivittatus Kuhl, and the local mosquito community in Florida, USA.

    Science.gov (United States)

    Reeves, Lawrence E; Krysko, Kenneth L; Avery, Michael L; Gillett-Kaufman, Jennifer L; Kawahara, Akito Y; Connelly, C Roxanne; Kaufman, Phillip E

    2018-01-01

    The Burmese python, Python bivittatus Kuhl, is a well-established invasive species in the greater Everglades ecosystem of southern Florida, USA. Most research on its ecological impacts focuses on its role as a predator and its trophic interactions with native vertebrate species, particularly mammals. Beyond predation, there is little known about the ecological interactions between P. bivittatus and native faunal communities. It is likely that established populations of P. bivittatus in southern Florida serve as hosts for native mosquito communities. To test this concept, we used mitochondrial cytochrome c oxidase subunit I DNA barcoding to determine the hosts of blood fed mosquitoes collected at a research facility in northern Florida where captive P. bivittatus and Argentine black and white tegu, Salvator merianae (Duméril and Bibron), are maintained in outdoor enclosures, accessible to local mosquitoes. We recovered python DNA from the blood meals of three species of Culex mosquitoes: Culex erraticus (Dyar and Knab), Culex quinquefasciatus Say, and Culex pilosus (Dyar and Knab). Culex erraticus conclusively (P = 0.001; Fisher's Exact Test) took more blood meals from P. bivittatus than from any other available host. While the majority of mosquito blood meals in our sample were derived from P. bivittatus, only one was derived from S. merianae. These results demonstrate that local mosquitoes will feed on invasive P. bivittatus, a recently introduced host. If these interactions also occur in southern Florida, P. bivittatus may be involved in the transmission networks of mosquito-vectored pathogens. Our results also illustrate the potential of detecting the presence of P. bivittatus in the field through screening mosquito blood meals for their DNA.

  5. Interactions between the invasive Burmese python, Python bivittatus Kuhl, and the local mosquito community in Florida, USA.

    Directory of Open Access Journals (Sweden)

    Lawrence E Reeves

    Full Text Available The Burmese python, Python bivittatus Kuhl, is a well-established invasive species in the greater Everglades ecosystem of southern Florida, USA. Most research on its ecological impacts focuses on its role as a predator and its trophic interactions with native vertebrate species, particularly mammals. Beyond predation, there is little known about the ecological interactions between P. bivittatus and native faunal communities. It is likely that established populations of P. bivittatus in southern Florida serve as hosts for native mosquito communities. To test this concept, we used mitochondrial cytochrome c oxidase subunit I DNA barcoding to determine the hosts of blood fed mosquitoes collected at a research facility in northern Florida where captive P. bivittatus and Argentine black and white tegu, Salvator merianae (Duméril and Bibron, are maintained in outdoor enclosures, accessible to local mosquitoes. We recovered python DNA from the blood meals of three species of Culex mosquitoes: Culex erraticus (Dyar and Knab, Culex quinquefasciatus Say, and Culex pilosus (Dyar and Knab. Culex erraticus conclusively (P = 0.001; Fisher's Exact Test took more blood meals from P. bivittatus than from any other available host. While the majority of mosquito blood meals in our sample were derived from P. bivittatus, only one was derived from S. merianae. These results demonstrate that local mosquitoes will feed on invasive P. bivittatus, a recently introduced host. If these interactions also occur in southern Florida, P. bivittatus may be involved in the transmission networks of mosquito-vectored pathogens. Our results also illustrate the potential of detecting the presence of P. bivittatus in the field through screening mosquito blood meals for their DNA.

  6. Human Mobility Analysis for Extracting Local Interactions under Rapid Socio-Economic Transformation in Dawei, Myanmar

    Directory of Open Access Journals (Sweden)

    Satomi Kimijima

    2017-09-01

    Full Text Available Understanding human mobility patterns provides knowledge about impacts of a socio-economic transformation in a rapidly urbanizing environment. This study assesses a long-term mobility data which uses a face-to-face questionnaire and GPS logger-based method of data collection for extracting socio-economic impacts from the rapid transformation. Conversion of mobility related information such as travel distance, direction, and time from the questionnaire survey into spatiotemporal information was carried out by developing an algorithm. To illustrate the proposed approach, a case study in Dawei Special Economic Zone, Myanmar was conducted. The results show that the questionnaire-based mobility data can be associated with GPS-based mobility data and diverse mobility patterns are found for different social groups in the stage of urban formation. The results enabled an understanding of the human dynamics in interactions, which can be used for monitoring rural sustainability and its challenges in the future with the background of the accelerated project development in the area.

  7. Interactive effect of aging and local muscle heating on renal vasoconstriction during isometric handgrip.

    Science.gov (United States)

    Kuipers, Nathan T; Sauder, Charity L; Kearney, Matthew L; Ray, Chester A

    2009-08-01

    The purpose of the study was to determine the interactive effect of aging and forearm muscle heating on renal vascular conductance and muscle sympathetic nerve activity (MSNA) during ischemic isometric handgrip. A tube-lined, water-perfused sleeve was used to heat the forearm in 12 young (27 +/- 1 yr) and 9 older (63 +/- 1 yr) subjects. Ischemic isometric handgrip was performed before and after heating. Muscle temperature (intramuscular thermistor) was 34.3 +/- 0.2 and 38.7 +/- 0.1 degrees C during normothermia and heating, respectively. At rest, heating had no effect on renal blood velocity (Doppler ultrasound) or renal vascular conductance in either group (young, n = 12; older, n = 8). Heating compared with normothermia caused a significantly greater increase in renal vasoconstriction during exercise and postexercise muscle ischemia (PEMI) in both groups. However, the increase in renal vasoconstriction during heating was greater in the older compared with the young subjects (18 +/- 3 vs. 8 +/- 3%). During handgrip, heating elicited greater increases in MSNA responses in the older group (young, n = 12; older, n = 6), whereas no statistical difference was observed between groups during PEMI. In summary, aging augments renal vascular responses to ischemic isometric handgrip during heating of the exercising muscle. The greater renal vasoconstriction was associated with augmented MSNA in the older subjects.

  8. Local ecological knowledge of artisanal fishermen in southern Bahia, Brazil, about trophic interactions of sharks

    Directory of Open Access Journals (Sweden)

    Márcio Luiz Vargas Barbosa Filho

    2016-09-01

    Full Text Available Despite the serious threats that affect shark species living along the central coast of Brazil, knowledge about the life history of these animals is still scarce. The present study describes the knowledge and perceptions of fishermen from southern Bahia, Brazil, on the trophic interactions of sharks. The objective of this work was to generate information that contributes to a better understanding of the life history of sharks from this poorly known region. In 2012, semi-structured interviews were conducted with 65 fishermen, with over 15 years of experience, about fisheries and aspects of shark feeding behavior. The study found that the participants have comprehensive ethno-ecological knowledge about shark feeding habits, describing 39 types of items as components of the diets of these animals. They are also able to recognize the favored items in the diet of each ethnospecies of shark. Similar studies about shark feeding habits along the Brazilian coast should be developed. This will generate more detailed knowledge and/or new scientific hypotheses about the interspecific relationships of these predators and their prey.

  9. Multiple roles for nuclear localization signal (NLS, aa 442-472) of receptor interacting protein 3 (RIP3)

    International Nuclear Information System (INIS)

    Li Mei; Feng Shanshan; Wu Mian

    2008-01-01

    RIP3, a Ser/Thr kinase of RIP (Receptor Interacting Protein) family, is recruited to the TNFR1 signaling complex through RIP and has been shown to mediate apoptosis induction and NF-κB activation. RIP3 is a nucleocytoplasmic shuttling protein and its unconventional nuclear localization signal (NLS, 442-472 aa) is sufficient to trigger apoptosis in the nucleus. In this study, we demonstrate that this NLS exhibits several other roles besides apoptotic function. Firstly, this NLS was found to be required for both RIP3-induced apoptosis and RIP3-mediated NF-κB activation. Next, similar to RHIM motif (RIP homotypic interaction motif), NLS of RIP3 was found to be involved in RIP3-RIP interaction. Furthermore, this NLS was found to be both sufficient and necessary for RIP3 self-association. Our primary data also showed that RIP3 might form a homodimer within cells, and its apoptotic activity may not be required for this dimerization, rather the intactness of NLS determines RIP3-induced apoptosis, since a point mutation at amino acid residue 452 (Ile to Ala) within NLS greatly reduced its apoptotic ability, despite that RIP3 point mutant RIP3/I452A is able to dimerize with wild type RIP3 or itself

  10. Fission, fusion and annihilation in the interaction of localized structures for the (2 + 1)-dimensional generalized Broer-Kaup system

    International Nuclear Information System (INIS)

    Yomba, Emmanuel; Peng, Yan-ze

    2006-01-01

    Based on the WTC truncation method and the general variable separation approach (GVSA), we have first found a general solution including three arbitrary functions for the (2 + 1)-dimensional simplified generalized Broer-Kaup (GBK) system (B = 0). A class of double periodic wave solutions is obtained by selecting these arbitrary functions appropriately. The interaction properties of the periodic waves are numerically studied and found to be non-elastic. Limit cases are considered and some new localized coherent structures are obtained, the interaction properties of these solutions reveal that some of them are completely elastic and some are non-completely elastic. After that, starting from the (2 + 1)-dimensional GBK system (B ≠ 0) and using the variable separation approach (VSA) including two arbitrary functions in the general solution, we have constructed by selecting the two arbitrary functions appropriately a rich variety of new coherent structures. The interaction properties of these structures reveal new physical properties like fusion, fission, or both and present mutual annihilation of these solutions as time increasing. The annihilation in this model has found to be rule by the parameter K 1 , when this parameter is taken to be zero, the annihilation disappears in this model and the above mentioned structures recover the solitonic structure properties

  11. Enhancing teen pregnancy prevention in local communities: capacity building using the interactive systems framework.

    Science.gov (United States)

    Duffy, Jennifer L; Prince, Mary Severson; Johnson, Erin E; Alton, Forrest L; Flynn, Shannon; Faye, Amy Mattison; Padgett, Polly Edwards; Rollison, Chris; Becker, Dana; Hinzey, Angela L

    2012-12-01

    Getting To Outcomes (GTO), an innovative framework for planning, implementing, evaluating, and sustaining interventions has been shown to be effective in helping community-based organizations (CBOs) introduce science-based approaches into their prevention work. However, the Interactive Systems Framework (ISF) suggests that adopting innovations like GTO requires a significant amount of capacity building through training and technical assistance (T/TA). In this study, 11 CBOs and three schools in South Carolina entered into a 3 year program of intense and proactive T/TA based on the ISF to learn how to apply an adaptation of GTO (Promoting Science-Based Approaches-Getting To Outcomes, PSBA-GTO) to their teen pregnancy prevention programs. Using semi-structured interviews, the partnering organizations were assessed at three points in time, pre-T/TA, 12 months, and post T/TA (30 months) for their performance of the steps of GTO in their work. The seven organizations which participated in T/TA until the end of the project received an average of 76 h of TA and 112 h of training per organization. Interview results showed increased performance of all 10 steps of PSBA-GTO by these organizations when conducting their teen pregnancy programs. These results suggest targeted and proactive T/TA can successfully bridge the gap between research and practice by using a three part delivery system, as prescribed in the ISF, which relies on an intermediary prevention support system to ensure accurate and effective translation of research to the everyday work of community-based practitioners.

  12. Interaction between local parameters of two-phase flow and random forces on a cylinder

    International Nuclear Information System (INIS)

    Sylviane Pascal-Ribot; Yves Blanchet; Franck Baj; Phillippe Piteau

    2005-01-01

    Full text of publication follows: In the frame of assessments of steam generator tube bundle vibrations, a study was conducted in order to investigate the effects of an air/water flow on turbulent buffeting forces induced on a cylinder. The main purpose is to relate the physical parameters characterizing an air/water two-phase crossflow with the structural loading of a fixed cylindrical tube. In this first approach, the experiments are carried out in a rectangular acrylic test section supplied with a vertical upward bubbly flow. This flow is transversally impeded by a fixed rigid 12,15 mm diameter cylinder. Different turbulence grids are used in order to modify two-phase characteristics such as bubble diameter, void fraction profile, fluctuation parameters. Preliminarily, a dimensional analysis of fluid-structure interaction under two-phase turbulent solicitations has enabled to identify a list of physically relevant variables which must be measured to evaluate the random forces. The meaning of these relevant parameters as well as the effect of flow patterns are discussed. Direct measurements of two-phase flow parameters are performed simultaneously with measurements of forces exerted on the cylinder. The main descriptive parameters of a two-phase flow are measured using a bi-optical probe, in particular void fraction profiles, interfacial velocities, bubble diameters, void fraction fluctuations. In the same time, the magnitude of random forces caused by two-phase flow is measured with a force transducer. A thorough analysis of the experimental data is then undertaken in order to correlate physical two-phase mechanisms with the random forces exerted on the cylinder. The hypotheses made while applying the dimensional analysis are verified and their pertinence is discussed. Finally, physical parameters involved in random buffeting forces applied on a transverse tube are proposed to scale the spectral magnitude of these forces and comparisons with other authors

  13. Posttranslational modifications, localization, and protein interactions of optineurin, the product of a glaucoma gene.

    Directory of Open Access Journals (Sweden)

    Hongyu Ying

    Full Text Available BACKGROUND: Glaucoma is a major blinding disease. The most common form of this disease, primary open angle glaucoma (POAG, is genetically heterogeneous. One of the candidate genes, optineurin, is linked principally to normal tension glaucoma, a subtype of POAG. The present study was undertaken to illustrate the basic characteristics of optineurin. METHODOLOGY/PRINCIPAL FINDINGS: Lysates from rat retinal ganglion RGC5 cells were subjected to N- or O-deglycosylation or membrane protein extraction. The phosphorylation status was evaluated after immunoprecipitation. It was found that while phosphorylated, optineurin was neither N- nor O-glycosylated, and was by itself not a membrane protein. RGC5 and human retinal pigment epithelial cells were double stained with anti-optineurin and anti-GM130. The endogenous optineurin exhibited a diffuse, cytoplasmic distribution, but a population of the protein was associated with the Golgi apparatus. Turnover experiments showed that the endogenous optineurin was relatively short-lived, with a half-life of approximately 8 hours. Native blue gel electrophoresis revealed that the endogenous optineurin formed homohexamers. Optineurin also interacted with molecules including Rab8, myosin VI, and transferrin receptor to assemble into supermolecular complexes. When overexpressed, optineurin-green fluorescence protein (GFP fusion protein formed punctate structures termed "foci" in the perinuclear region. Treatment of nocadazole resulted in dispersion of the optineurin foci. In addition, tetracycline-regulated optineurin-GFPs expressing RGC5 stable cell lines were established for the first time. CONCLUSIONS/SIGNIFICANCE: The present study provides new information regarding basic characteristics of optineurin that are important for future efforts in defining precisely how optineurin functions normally and how mutations may result in pathology. The inducible optineurin-GFP-expressing cell lines are also anticipated to

  14. Carbon dynamics and CO2 air-sea exchanges in the eutrophied coastal waters of the Southern Bight of the North Sea: a modelling study

    Directory of Open Access Journals (Sweden)

    N. Gypens

    2004-01-01

    Full Text Available A description of the carbonate system has been incorporated in the MIRO biogeochemical model to investigate the contribution of diatom and Phaeocystis blooms to the seasonal dynamics of air-sea CO2 exchanges in the Eastern Channel and Southern Bight of the North Sea, with focus on the eutrophied Belgian coastal waters. For this application, the model was implemented in a simplified three-box representation of the hydrodynamics with the open ocean boundary box ‘Western English Channel’ (WCH and the ‘French Coastal Zone’ (FCZ and ‘Belgian Coastal Zone’ (BCZ boxes receiving carbon and nutrients from the rivers Seine and Scheldt, respectively. Results were obtained by running the model for the 1996–1999 period. The simulated partial pressures of CO2 (pCO2 were successfully compared with data recorded over the same period in the central BCZ at station 330 (51°26.05′ N; 002°48.50′ E. Budget calculations based on model simulations of carbon flow rates indicated for BCZ a low annual sink of atmospheric CO2 (−0.17 mol C m-2 y-1. On the opposite, surface water pCO2 in WCH was estimated to be at annual equilibrium with respect to atmospheric CO2. The relative contribution of biological, chemical and physical processes to the modelled seasonal variability of pCO2 in BCZ was further explored by running model scenarios with separate closures of biological activities and/or river inputs of carbon. The suppression of biological processes reversed direction of the CO2 flux in BCZ that became, on an annual scale, a significant source for atmospheric CO2 (+0.53 mol C m-2 y-1. Overall biological activity had a stronger influence on the modelled seasonal cycle of pCO2 than temperature. Especially Phaeocystis colonies which growth in spring were associated with an important sink of atmospheric CO2 that counteracted the temperature-driven increase of pCO2 at this period of the year. However, river inputs of organic and inorganic carbon were

  15. Wind Speed and Sea State Dependencies of Air-Sea Gas Transfer: Results From the High Wind Speed Gas Exchange Study (HiWinGS)

    Science.gov (United States)

    Blomquist, B. W.; Brumer, S. E.; Fairall, C. W.; Huebert, B. J.; Zappa, C. J.; Brooks, I. M.; Yang, M.; Bariteau, L.; Prytherch, J.; Hare, J. E.; Czerski, H.; Matei, A.; Pascal, R. W.

    2017-10-01

    A variety of physical mechanisms are jointly responsible for facilitating air-sea gas transfer through turbulent processes at the atmosphere-ocean interface. The nature and relative importance of these mechanisms evolves with increasing wind speed. Theoretical and modeling approaches are advancing, but the limited quantity of observational data at high wind speeds hinders the assessment of these efforts. The HiWinGS project successfully measured gas transfer coefficients (k660) with coincident wave statistics under conditions with hourly mean wind speeds up to 24 m s-1 and significant wave heights to 8 m. Measurements of k660 for carbon dioxide (CO2) and dimethylsulfide (DMS) show an increasing trend with respect to 10 m neutral wind speed (U10N), following a power law relationship of the form: k660 CO2˜U10N1.68 and k660 dms˜U10N1.33. Among seven high wind speed events, CO2 transfer responded to the intensity of wave breaking, which depended on both wind speed and sea state in a complex manner, with k660 CO2 increasing as the wind sea approaches full development. A similar response is not observed for DMS. These results confirm the importance of breaking waves and bubble injection mechanisms in facilitating CO2 transfer. A modified version of the Coupled Ocean-Atmosphere Response Experiment Gas transfer algorithm (COAREG ver. 3.5), incorporating a sea state-dependent calculation of bubble-mediated transfer, successfully reproduces the mean trend in observed k660 with wind speed for both gases. Significant suppression of gas transfer by large waves was not observed during HiWinGS, in contrast to results from two prior field programs.

  16. 3d-4f magnetic interaction with density functional theory plus u approach: local Coulomb correlation and exchange pathways.

    Science.gov (United States)

    Zhang, Yachao; Yang, Yang; Jiang, Hong

    2013-12-12

    The 3d-4f exchange interaction plays an important role in many lanthanide based molecular magnetic materials such as single-molecule magnets and magnetic refrigerants. In this work, we study the 3d-4f magnetic exchange interactions in a series of Cu(II)-Gd(III) (3d(9)-4f(7)) dinuclear complexes based on the numerical atomic basis-norm-conserving pseudopotential method and density functional theory plus the Hubbard U correction approach (DFT+U). We obtain improved description of the 4f electrons by including the semicore 5s5p states in the valence part of the Gd-pseudopotential. The Hubbard U correction is employed to treat the strongly correlated Cu-3d and Gd-4f electrons, which significantly improve the agreement of the predicted exchange constants, J, with experiment, indicating the importance of accurate description of the local Coulomb correlation. The high efficiency of the DFT+U approach enables us to perform calculations with molecular crystals, which in general improve the agreement between theory and experiment, achieving a mean absolute error smaller than 2 cm(-1). In addition, through analyzing the physical effects of U, we identify two magnetic exchange pathways. One is ferromagnetic and involves an interaction between the Cu-3d, O-2p (bridge ligand), and the majority-spin Gd-5d orbitals. The other one is antiferromagnetic and involves Cu-3d, O-2p, and the empty minority-spin Gd-4f orbitals, which is suppressed by the planar Cu-O-O-Gd structure. This study demonstrates the accuracy of the DFT+U method for evaluating the 3d-4f exchange interactions, provides a better understanding of the exchange mechanism in the Cu(II)-Gd(III) complexes, and paves the way for exploiting the magnetic properties of the 3d-4f compounds containing lanthanides other than Gd.

  17. NBS1 localizes to gamma-H2AX foci through interaction with the FHA/BRCT domain

    International Nuclear Information System (INIS)

    Kobayashi, J.; Chen, D.J.; Sakamoto, S.; Matsuura, S.; Tanimoto, K.; Komatsu, K.

    2003-01-01

    Full text: DNA double-strand breaks (DSBs) represent the most potentially serious damage to a genome, and hence, many repair proteins are recruited to nuclear damage sites by as yet poorly characterized sensor mechanisms. Histone H2AX, one of histone H2A family, is phosphorylated within a few minutes in response to ionizing radiation (IR) and the phosphorylated H2AX (gamma-H2AX) forms foci at the region of DSBs. Moreover, Histone H2AX is essential for the IR-induced focus formation of DNA repair proteins such as BRCA1, NBS1 and 53BP1. Hence, we investigated that the function of histone H2AX for the recruitment of NBS1/hMRE11/ hRAD50 complex to DSBs sites. We clarify that NBS1 physically interacts with histone H2AX independent of DNA. We also show that the NBS1-binding can occur in the absence of interaction with hMRE11 or BRCA1. Furthermore, this NBS1 physical interaction was reduced when anti-gamma-H2AX antibody was introduced into normal cells. We also demonstrate that the FHA/BRCT domain of NBS1 is essential for this physical interaction by the immunoprecipitation studies and a pull-down assay with recombinant FHA/BRCT domain. These findings suggest that the FHA/BRCT domain have a crucial role for both binding to histone and for re-localization of hMRE11/hRAD50 nuclease complex to the vicinity of DNA damage

  18. The Local ISM and its Interaction with the Winds of Nearby Late-type Stars

    Science.gov (United States)

    Wood, Brian E.; Linsky, Jeffrey L.

    1998-01-01

    We present new Goddard High-Resolution Spectrograph (GHRS) observations of the Ly-alpha and Mg II absorption lines seen toward the nearby stars 61 Cyg A and 40 Eri A. We use these data to measure interstellar properties along these lines of sight and to search for evidence of circumstellar hydrogen walls, which are produced by collisions between the stellar winds and the Local InterStellar Medium (LISM). We were able to model the Ly-alpha lines of both stars without hydrogen-wall absorption components, but for 61 Cyg A the fit required a stellar Ly-alpha, line profile with an improbably deep self-reversal, and for 40 Eri A the fit required a very low deuterium-to-hydrogen ratio that is inconsistent with previous GHRS measurements. Since these problems could be rectified simply by including stellar hydrogen-wall components with reasonable attributes, our preferred fits to the data include these components. We have explored several ways in which the hydrogen-wall properties measured here and in previous work can be used to study stellar winds and the LISM. We argue that the existence of a hydrogen wall around 40 Eri A and a low H I column density along that line of sight imply that either the interstellar density must decrease toward 40 Eri A or the hydrogen ionization fraction (chi) must increase. We find that hydrogen-wall temperatures are larger for stars with faster velocities through the LISM. The observed temperature-velocity relation is consistent with the predictions of hydromagnetic shock jump conditions. More precise comparison of the data and the jump conditions suggests crude upper limits for both chi and the ratio of magnetic to thermal pressure in the LISM (alpha): chi less than 0.6 and alpha less than 2. The latter upper limit corresponds to a limit on the LISM magnetic field of B less than 5 micro G. These results imply that the plasma Mach number of the interstellar wind flowing into the heliosphere is M(sub A) greater than 1.3, which indicates that

  19. Local and regional interactions between air quality and climate in New Delhi- A sector based analysis

    Science.gov (United States)

    Marrapu, Pallavi

    Deteriorating air quality is one of the major problems faced worldwide and in particular in Asia. The world's most polluted megacities are located in Asia highlighting the urgent need for efforts to improve the air quality. New Delhi (India), one of the world's most polluted cities, was the host of the Common Wealth Games during the period of 4-14 October 2010. This high profile event provided a good opportunity to accelerate efforts to improve air quality. Computational advances now allow air quality forecast models to fully couple the meteorology with chemical constituents within a unified modeling system that allows two-way interactions. The WRF-Chem model is used to simulate air quality in New Delhi. The thesis focuses on evaluating air quality and meteorology feedbacks. Four nested domains ranging from South Asia, Northern India, NCR Delhi and Delhi city at 45km, 15km, 5km and 1.67km resolution for a period of 20 day (26th Sep--15th Oct, 2010) are used in the study. The predicted mean surface concentrations of various pollutants show similar spatial distributions with peak values in the middle of the domain reflecting the traffic and population patterns in the city. Along with these activities, construction dust and industrial emissions contribute to high levels of criteria pollutants. The study evaluates the WRF-Chem capabilities using a new emission inventory developed over Delhi at a fine resolution of 1.67km and evaluating the results with observational data from 11 monitoring sties placed at various Game venues. The contribution of emission sectors including transportation, power, industry, and domestic to pollutant concentrations at targeted regions are studied and the results show that transportation and domestic sector are the major contributors to the pollution levels in Delhi, followed by industry. Apart from these sectors, emissions outside of Delhi contribute 20-50% to surface concentrations depending on the species. This indicates that pollution

  20. A localized interaction surface for voltage-sensing domains on the pore domain of a K+ channel.

    Science.gov (United States)

    Li-Smerin, Y; Hackos, D H; Swartz, K J

    2000-02-01

    Voltage-gated K+ channels contain a central pore domain and four surrounding voltage-sensing domains. How and where changes in the structure of the voltage-sensing domains couple to the pore domain so as to gate ion conduction is not understood. The crystal structure of KcsA, a bacterial K+ channel homologous to the pore domain of voltage-gated K+ channels, provides a starting point for addressing this question. Guided by this structure, we used tryptophan-scanning mutagenesis on the transmembrane shell of the pore domain in the Shaker voltage-gated K+ channel to localize potential protein-protein and protein-lipid interfaces. Some mutants cause only minor changes in gating and when mapped onto the KcsA structure cluster away from the interface between pore domain subunits. In contrast, mutants producing large changes in gating tend to cluster near this interface. These results imply that voltage-sensing domains interact with localized regions near the interface between adjacent pore domain subunits.

  1. Automatic mesh refinement and local multigrid methods for contact problems: application to the Pellet-Cladding mechanical Interaction

    International Nuclear Information System (INIS)

    Liu, Hao

    2016-01-01

    This Ph.D. work takes place within the framework of studies on Pellet-Cladding mechanical Interaction (PCI) which occurs in the fuel rods of pressurized water reactor. This manuscript focuses on automatic mesh refinement to simulate more accurately this phenomena while maintaining acceptable computational time and memory space for industrial calculations. An automatic mesh refinement strategy based on the combination of the Local Defect Correction multigrid method (LDC) with the Zienkiewicz and Zhu a posteriori error estimator is proposed. The estimated error is used to detect the zones to be refined, where the local sub-grids of the LDC method are generated. Several stopping criteria are studied to end the refinement process when the solution is accurate enough or when the refinement does not improve the global solution accuracy anymore. Numerical results for elastic 2D test cases with pressure discontinuity show the efficiency of the proposed strategy. The automatic mesh refinement in case of unilateral contact problems is then considered. The strategy previously introduced can be easily adapted to the multi-body refinement by estimating solution error on each body separately. Post-processing is often necessary to ensure the conformity of the refined areas regarding the contact boundaries. A variety of numerical experiments with elastic contact (with or without friction, with or without an initial gap) confirms the efficiency and adaptability of the proposed strategy. (author) [fr

  2. On the relation between orbital-localization and self-interaction errors in the density functional theory treatment of organic semiconductors.

    Science.gov (United States)

    Körzdörfer, T

    2011-03-07

    It is commonly argued that the self-interaction error (SIE) inherent in semilocal density functionals is related to the degree of the electronic localization. Yet at the same time there exists a latent ambiguity in the definitions of the terms "localization" and "self-interaction," which ultimately prevents a clear and readily accessible quantification of this relationship. This problem is particularly pressing for organic semiconductor molecules, in which delocalized molecular orbitals typically alternate with localized ones, thus leading to major distortions in the eigenvalue spectra. This paper discusses the relation between localization and SIEs in organic semiconductors in detail. Its findings provide further insights into the SIE in the orbital energies and yield a new perspective on the failure of self-interaction corrections that identify delocalized orbital densities with electrons. © 2011 American Institute of Physics.

  3. Identifying interactions in the time and frequency domains in local and global networks - A Granger Causality Approach.

    Science.gov (United States)

    Zou, Cunlu; Ladroue, Christophe; Guo, Shuixia; Feng, Jianfeng

    2010-06-21

    Reverse-engineering approaches such as Bayesian network inference, ordinary differential equations (ODEs) and information theory are widely applied to deriving causal relationships among different elements such as genes, proteins, metabolites, neurons, brain areas and so on, based upon multi-dimensional spatial and temporal data. There are several well-established reverse-engineering approaches to explore causal relationships in a dynamic network, such as ordinary differential equations (ODE), Bayesian networks, information theory and Granger Causality. Here we focused on Granger causality both in the time and frequency domain and in local and global networks, and applied our approach to experimental data (genes and proteins). For a small gene network, Granger causality outperformed all the other three approaches mentioned above. A global protein network of 812 proteins was reconstructed, using a novel approach. The obtained results fitted well with known experimental findings and predicted many experimentally testable results. In addition to interactions in the time domain, interactions in the frequency domain were also recovered. The results on the proteomic data and gene data confirm that Granger causality is a simple and accurate approach to recover the network structure. Our approach is general and can be easily applied to other types of temporal data.

  4. Identifying interactions in the time and frequency domains in local and global networks - A Granger Causality Approach

    Directory of Open Access Journals (Sweden)

    Guo Shuixia

    2010-06-01

    Full Text Available Abstract Background Reverse-engineering approaches such as Bayesian network inference, ordinary differential equations (ODEs and information theory are widely applied to deriving causal relationships among different elements such as genes, proteins, metabolites, neurons, brain areas and so on, based upon multi-dimensional spatial and temporal data. There are several well-established reverse-engineering approaches to explore causal relationships in a dynamic network, such as ordinary differential equations (ODE, Bayesian networks, information theory and Granger Causality. Results Here we focused on Granger causality both in the time and frequency domain and in local and global networks, and applied our approach to experimental data (genes and proteins. For a small gene network, Granger causality outperformed all the other three approaches mentioned above. A global protein network of 812 proteins was reconstructed, using a novel approach. The obtained results fitted well with known experimental findings and predicted many experimentally testable results. In addition to interactions in the time domain, interactions in the frequency domain were also recovered. Conclusions The results on the proteomic data and gene data confirm that Granger causality is a simple and accurate approach to recover the network structure. Our approach is general and can be easily applied to other types of temporal data.

  5. Centrobin-centrosomal protein 4.1-associated protein (CPAP) interaction promotes CPAP localization to the centrioles during centriole duplication.

    Science.gov (United States)

    Gudi, Radhika; Zou, Chaozhong; Dhar, Jayeeta; Gao, Qingshen; Vasu, Chenthamarakshan

    2014-05-30

    Centriole duplication is the process by which two new daughter centrioles are generated from the proximal end of preexisting mother centrioles. Accurate centriole duplication is important for many cellular and physiological events, including cell division and ciliogenesis. Centrosomal protein 4.1-associated protein (CPAP), centrosomal protein of 152 kDa (CEP152), and centrobin are known to be essential for centriole duplication. However, the precise mechanism by which they contribute to centriole duplication is not known. In this study, we show that centrobin interacts with CEP152 and CPAP, and the centrobin-CPAP interaction is critical for centriole duplication. Although depletion of centrobin from cells did not have an effect on the centriolar levels of CEP152, it caused the disappearance of CPAP from both the preexisting and newly formed centrioles. Moreover, exogenous expression of the CPAP-binding fragment of centrobin also caused the disappearance of CPAP from both the preexisting and newly synthesized centrioles, possibly in a dominant negative manner, thereby inhibiting centriole duplication and the PLK4 overexpression-mediated centrosome amplification. Interestingly, exogenous overexpression of CPAP in the centrobin-depleted cells did not restore CPAP localization to the centrioles. However, restoration of centrobin expression in the centrobin-depleted cells led to the reappearance of centriolar CPAP. Hence, we conclude that centrobin-CPAP interaction is critical for the recruitment of CPAP to procentrioles to promote the elongation of daughter centrioles and for the persistence of CPAP on preexisting mother centrioles. Our study indicates that regulation of CPAP levels on the centrioles by centrobin is critical for preserving the normal size, shape, and number of centrioles in the cell. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

  6. Alkyladenine DNA glycosylase (AAG) localizes to mitochondria and interacts with mitochondrial single-stranded binding protein (mtSSB).

    Science.gov (United States)

    van Loon, Barbara; Samson, Leona D

    2013-03-01

    Due to a harsh environment mitochondrial genomes accumulate high levels of DNA damage, in particular oxidation, hydrolytic deamination, and alkylation adducts. While repair of alkylated bases in nuclear DNA has been explored in detail, much less is known about the repair of DNA alkylation damage in mitochondria. Alkyladenine DNA glycosylase (AAG) recognizes and removes numerous alkylated bases, but to date AAG has only been detected in the nucleus, even though mammalian mitochondria are known to repair DNA lesions that are specific substrates of AAG. Here we use immunofluorescence to show that AAG localizes to mitochondria, and we find that native AAG is present in purified human mitochondrial extracts, as well as that exposure to alkylating agent promotes AAG accumulation in the mitochondria. We identify mitochondrial single-stranded binding protein (mtSSB) as a novel interacting partner of AAG; interaction between mtSSB and AAG is direct and increases upon methyl methanesulfonate (MMS) treatment. The consequence of this interaction is specific inhibition of AAG glycosylase activity in the context of a single-stranded DNA (ssDNA), but not a double-stranded DNA (dsDNA) substrate. By inhibiting AAG-initiated processing of damaged bases, mtSSB potentially prevents formation of DNA breaks in ssDNA, ensuring that base removal primarily occurs in dsDNA. In summary, our findings suggest the existence of AAG-initiated BER in mitochondria and further support a role for mtSSB in DNA repair. Copyright © 2012. Published by Elsevier B.V.

  7. Centrobin-Centrosomal Protein 4.1-associated Protein (CPAP) Interaction Promotes CPAP Localization to the Centrioles during Centriole Duplication*

    Science.gov (United States)

    Gudi, Radhika; Zou, Chaozhong; Dhar, Jayeeta; Gao, Qingshen; Vasu, Chenthamarakshan

    2014-01-01

    Centriole duplication is the process by which two new daughter centrioles are generated from the proximal end of preexisting mother centrioles. Accurate centriole duplication is important for many cellular and physiological events, including cell division and ciliogenesis. Centrosomal protein 4.1-associated protein (CPAP), centrosomal protein of 152 kDa (CEP152), and centrobin are known to be essential for centriole duplication. However, the precise mechanism by which they contribute to centriole duplication is not known. In this study, we show that centrobin interacts with CEP152 and CPAP, and the centrobin-CPAP interaction is critical for centriole duplication. Although depletion of centrobin from cells did not have an effect on the centriolar levels of CEP152, it caused the disappearance of CPAP from both the preexisting and newly formed centrioles. Moreover, exogenous expression of the CPAP-binding fragment of centrobin also caused the disappearance of CPAP from both the preexisting and newly synthesized centrioles, possibly in a dominant negative manner, thereby inhibiting centriole duplication and the PLK4 overexpression-mediated centrosome amplification. Interestingly, exogenous overexpression of CPAP in the centrobin-depleted cells did not restore CPAP localization to the centrioles. However, restoration of centrobin expression in the centrobin-depleted cells led to the reappearance of centriolar CPAP. Hence, we conclude that centrobin-CPAP interaction is critical for the recruitment of CPAP to procentrioles to promote the elongation of daughter centrioles and for the persistence of CPAP on preexisting mother centrioles. Our study indicates that regulation of CPAP levels on the centrioles by centrobin is critical for preserving the normal size, shape, and number of centrioles in the cell. PMID:24700465

  8. Air sea ratio reduction initiative

    Energy Technology Data Exchange (ETDEWEB)

    Oberle, Jean

    2010-09-15

    Airfreight is the most expensive mode of transportation as well as the most impacting in terms of CO{sup 2} emissions. It is 7 times more expensive on average to ship by air than shipping by sea 1. Airfreight transportation mode emits 30 times more CO{sup 2} than sea freight mode 2. These elements provided a compelling platform to design a global logistics program to initiate a modal shift from air to sea freight without compromising service to customers.

  9. Global-local interactions

    DEFF Research Database (Denmark)

    Larsen, Jytte Agergaard; Fold, Niels; Gough, Katherine

    2009-01-01

    , in the Central Highlands of Vietnam, produces more than 50% of Vietnam's coffee. As Vietnam is the world's largest exporter of Robusta coffee, Dak Lak is highly embedded in the dynamics of the world coffee market. Planned settlement in Dak Lak started in the 1950s and has continued in phases orchestrated...... coffee marketing chain.......Due to their dependence on a single crop, agricultural frontiers are often considered to be formed through phases of 'boom and bust'. These phases are closely related to fluctuations in world market prices of the commodity that constitutes the frontier's economic basis. This paper demonstrates how...

  10. [Distributions and air-sea fluxes of dissolved nitrous oxide in the Yangtze River estuary and its adjacent marine area in spring and summer].

    Science.gov (United States)

    Wang, Lan; Zhang, Gui-ling; Sun, Ming-shuang; Ren, Jing-ling

    2014-12-01

    Distributions and air-sea fluxes of nitrous oxide (N2O) in the seawaters of the Yangtze River estuary and its adjacent marine area were investigated during two cruises in March and July 2012. Dissolved N2O concentrations in surface waters ranged from 9.34 to 49.08 nmol x L(-1) with an average of (13.27 ± 6.40) nmol x L(-1) in spring and ranged from 7.27 to 27.81 nmol x L(-1) with an average of (10.62 ± 5.03) nmol x L(-1) in summer. There was no obvious difference between surface and bottom N2O concentrations. N2O concentrations in both surface and bottom waters decreased along the freshwater plume from the river mouth to the open sea. High values of dissolved N2O were found in turbidity maximum zone, which suggests that maximal turbidity enhances nitrification. Temperature had dual effects on dissolved N2O concentrations. N2O saturations in surface waters ranged from 86.9% to 351.3% with an average of (111.5 ± 41.4)% in spring and ranged from 111.7% to 396.0% with an average of (155.9 ± 68.4)% in summer. N2O were over-saturated at most stations. The sea-to-air fluxes of N2O were estimated to be (3.2 ± 10.9), (5.5 ± 19.3) and (12.2 ±52.3) μmol x (m2 x d)(-1) in spring and (7.3 ± 12.4), (12.7 ± 20.4) and (20.4 ± 35.9) μmol x (m2 x d)(-1) in summer using the LM86, W92 and RC01 relationships, respectively. The annual emissions of N2O from the Yangtze River estuary and its adjacent marine area were estimated to be 0.6 x 10(-2) Tg x a(-1) (LM86), 1.1 x 10(-2) Tg x a(-1) (W92) and 2.0 x 10(-2) Tg x a(-1) (RC01). Although the area of the Yangtze River estuary and its adjacent marine area only accounts for 0.02% of the total area of the world's oceans, their emission of N2O accounts for 0.06% of global oceanic N2O emission, indicating that the Yangtze River estuary and its adjacent marine area is an active area to produce and emit N2O.

  11. An assessment of TropFlux and NCEP air-sea fluxes on ROMS simulations over the Bay of Bengal region

    Science.gov (United States)

    Dey, Dipanjan; Sil, Sourav; Jana, Sudip; Pramanik, Saikat; Pandey, P. C.

    2017-12-01

    This study presents an assessment of the TropFlux and the National Centers for Environmental Prediction (NCEP) reanalysis air-sea fluxes in simulating the surface and subsurface oceanic parameters over the Bay of Bengal (BoB) region during 2002-2014 using the Regional Ocean Modelling System (ROMS). The assessment has been made by comparing the simulated fields with in-situ and satellite observations. The simulated surface and subsurface temperatures in the TropFlux forced experiment (TropFlux-E) show better agreement with the Research Moored Array for African-Asian-Australian Monsoon Analysis (RAMA) and Argo observations than the NCEP forced experiment (NCEP-E). The BoB domain averaged sea surface temperature (SST) simulated in the NCEP-E is consistently cooler than the satellite SST, with a root mean square error (RMSE) of 0.79 °C. Moreover, NCEP-E shows a limitation in simulating the observed seasonal cycle of the SST due to substantial underestimation of the pre-monsoon SST peak. These limitations are mostly due to the lower values of the NCEP net heat flux. The seasonal and interannual variations of SST in the TropFlux-E are better comparable to the observations with correlations and skills more than 0.80 and 0.90 respectively. However, SST is overestimated during summer monsoon periods mainly due to higher net heat flux. The superiority of TropFlux forcing over the NCEP reanalysis can also be seen when simulating the interannual variabilities of the magnitude and vertical extent of Wyrtki jets at two equatorial RAMA buoy locations. The jet is weaker in the NCEP-E relative to the TropFlux-E and observations. The simulated sea surface height anomalies (SSHA) from both the experiments are able to capture the regions of positive and negative SSHA with respect to satellite-derived altimeter data with better performance in the TropFlux-E. The speed of the westward propagating Rossby wave along 18°N in the TropFlux-E is found to be about 4.7 cm/s, which is close to

  12. A revised global ozone dry deposition estimate based on a new two-layer parameterisation for air-sea exchange and the multi-year MACC composition reanalysis

    Science.gov (United States)

    Luhar, Ashok K.; Woodhouse, Matthew T.; Galbally, Ian E.

    2018-03-01

    Dry deposition at the Earth's surface is an important sink of atmospheric ozone. Currently, dry deposition of ozone to the ocean surface in atmospheric chemistry models has the largest uncertainty compared to deposition to other surface types, with implications for global tropospheric ozone budget and associated radiative forcing. Most global models assume that the dominant term of surface resistance in the parameterisation of ozone dry deposition velocity at the oceanic surface is constant. There have been recent mechanistic parameterisations for air-sea exchange that account for the simultaneous waterside processes of ozone solubility, molecular diffusion, turbulent transfer, and first-order chemical reaction of ozone with dissolved iodide and other compounds, but there are questions about their performance and consistency. We present a new two-layer parameterisation scheme for the oceanic surface resistance by making the following realistic assumptions: (a) the thickness of the top water layer is of the order of a reaction-diffusion length scale (a few micrometres) within which ozone loss is dominated by chemical reaction and the influence of waterside turbulent transfer is negligible; (b) in the water layer below, both chemical reaction and waterside turbulent transfer act together and are accounted for; and (c) chemical reactivity is present through the depth of the oceanic mixing layer. The new parameterisation has been evaluated against dry deposition velocities from recent open-ocean measurements. It is found that the inclusion of only the aqueous iodide-ozone reaction satisfactorily describes the measurements. In order to better quantify the global dry deposition loss and its interannual variability, modelled 3-hourly ozone deposition velocities are combined with the 3-hourly MACC (Monitoring Atmospheric Composition and Climate) reanalysis ozone for the years 2003-2012. The resulting ozone dry deposition is found to be 98.4 ± 30.0 Tg O3 yr-1 for the ocean

  13. Interaction between extended and localized electronic states in the region of the metal to insulator transition in semiconductor alloys

    Energy Technology Data Exchange (ETDEWEB)

    Teubert, Joerg

    2008-07-01

    The first part of this work addresses the influence of those isovalent localized states on the electronic properties of (B,Ga,In)As. Most valuable were the measurements under hydrostatic pressure that revealed a pressure induced metal-insulator transition. One of the main ideas in this context is the trapping of carriers in localized B-related cluster states that appear in the bandgap at high pressure. The key conclusion that can be drawn from the experimental results is that boron atoms seem to have the character of isovalent electron traps, rendering boron as the first known isovalent trap induced by cationic substitution. In the second part, thermoelectric properties of (B,Ga,In)As and (Ga,In)(N,As) are studied. It was found that although the electric-field driven electronic transport in n-type (Ga,In)(N,As) and (B,Ga,In)As differs considerably from that of n-type GaAs, the temperature-gradient driven electronic transport is very similar for the three semiconductors, despite distinct differences in the conduction band structure of (Ga,In)(N,As) and (B,Ga,In)As compared to GaAs. The third part addresses the influence of magnetic interactions on the transport properties near the metal-insulator transition (MIT). Here, two scenarios are considered: Firstly the focus is set on ZnMnSe:Cl, a representative of so called dilute magnetic semiconductors (DMS). In this material Mn(2+) ions provide a large magnetic moment due to their half filled inner 3d-shell. It is shown that magnetic interactions in conjunction with disorder effects are responsible for the unusual magnetotransport behavior found in this and other II-Mn-VI semiconductor alloys. In the second scenario, a different magnetic compound, namely InSb:Mn, is of interest. It is a representative of the III-Mn-V DMS, where the magnetic impurity Mn serves both as the source of a large localized magnetic moment and as the source of a loosely bound hole due to its acceptor character. Up to now, little is known about

  14. Interaction between extended and localized electronic states in the region of the metal to insulator transition in semiconductor alloys

    International Nuclear Information System (INIS)

    Teubert, Joerg

    2008-01-01

    The first part of this work addresses the influence of those isovalent localized states on the electronic properties of (B,Ga,In)As. Most valuable were the measurements under hydrostatic pressure that revealed a pressure induced metal-insulator transition. One of the main ideas in this context is the trapping of carriers in localized B-related cluster states that appear in the bandgap at high pressure. The key conclusion that can be drawn from the experimental results is that boron atoms seem to have the character of isovalent electron traps, rendering boron as the first known isovalent trap induced by cationic substitution. In the second part, thermoelectric properties of (B,Ga,In)As and (Ga,In)(N,As) are studied. It was found that although the electric-field driven electronic transport in n-type (Ga,In)(N,As) and (B,Ga,In)As differs considerably from that of n-type GaAs, the temperature-gradient driven electronic transport is very similar for the three semiconductors, despite distinct differences in the conduction band structure of (Ga,In)(N,As) and (B,Ga,In)As compared to GaAs. The third part addresses the influence of magnetic interactions on the transport properties near the metal-insulator transition (MIT). Here, two scenarios are considered: Firstly the focus is set on ZnMnSe:Cl, a representative of so called dilute magnetic semiconductors (DMS). In this material Mn(2+) ions provide a large magnetic moment due to their half filled inner 3d-shell. It is shown that magnetic interactions in conjunction with disorder effects are responsible for the unusual magnetotransport behavior found in this and other II-Mn-VI semiconductor alloys. In the second scenario, a different magnetic compound, namely InSb:Mn, is of interest. It is a representative of the III-Mn-V DMS, where the magnetic impurity Mn serves both as the source of a large localized magnetic moment and as the source of a loosely bound hole due to its acceptor character. Up to now, little is known about

  15. Diagnosing the Sensitivity of Local Land-Atmosphere Coupling via the Soil Moisture-Boundary Layer Interaction

    Science.gov (United States)

    Santanello, Joseph A., Jr.; Peters-Lidard, Christa D.; Kumar, Sujay V.

    2011-01-01

    The inherent coupled nature of earth s energy and water cycles places significant importance on the proper representation and diagnosis of land atmosphere (LA) interactions in hydrometeorological prediction models. However, the precise nature of the soil moisture precipitation relationship at the local scale is largely determined by a series of nonlinear processes and feedbacks that are difficult to quantify. To quantify the strength of the local LA coupling (LoCo), this process chain must be considered both in full and as individual components through their relationships and sensitivities. To address this, recent modeling and diagnostic studies have been extended to 1) quantify the processes governing LoCo utilizing the thermodynamic properties of mixing diagrams, and 2) diagnose the sensitivity of coupled systems, including clouds and moist processes, to perturbations in soil moisture. This work employs NASA s Land Information System (LIS) coupled to the Weather Research and Forecasting (WRF) mesoscale model and simulations performed over the U.S. Southern Great Plains. The behavior of different planetary boundary layers (PBL) and land surface scheme couplings in LIS WRF are examined in the context of the evolution of thermodynamic quantities that link the surface soil moisture condition to the PBL regime, clouds, and precipitation. Specifically, the tendency toward saturation in the PBL is quantified by the lifting condensation level (LCL) deficit and addressed as a function of time and space. The sensitivity of the LCL deficit to the soil moisture condition is indicative of the strength of LoCo, where both positive and negative feedbacks can be identified. Overall, this methodology can be applied to any model or observations and is a crucial step toward improved evaluation and quantification of LoCo within models, particularly given the advent of next-generation satellite measurements of PBL and land surface properties along with advances in data assimilation

  16. Interactions of the local anesthetic tetracaine with membranes containing phosphatidylcholine and cholesterol: a 2H NMR study

    International Nuclear Information System (INIS)

    Auger, M.; Jarrell, H.C.; Smith, I.C.P.

    1988-01-01

    The interactions of local anesthetic tetracaine with multilamellar dispersions of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) and cholesterol have been investigated by deuterium nuclear magnetic resonance of specifically deuteriated tetracaines, DMPC and cholesterol. Experiments were performed at pH 5.5, when the anesthetic is primarily charged, and at pH 9.5, when it is primarily uncharged. The partition coefficients of the anesthetic in the membrane have been measured at both pH values for phosphatidylcholine bilayers with and without cholesterol. The higher partition coefficients obtained at pH 9.5 reflect the hydrophobic interactions between the uncharged form of the anesthetic and the hydrocarbon region of the bilayer. The lower partition coefficients for the DMPC/cholesterol system at both pH values suggest that cholesterol, which increases the order of the lipid chains, decreases the solubility of tetracaine into the bilayer. For phosphatidylcholine bilayers, it has been proposed that the charged tetracaine at low pH is located mostly at the phospholipid headgroup level while the uncharged tetracaine intercalates more deeply into the bilayer. The present study suggests that the location of tetracaine in the cholesterol-containing system is different from that in pure phosphatidylcholine bilayers: the anesthetic sits higher in the membrane. An increase in temperature results in a deeper penetration of the anesthetic into the bilayer. Moreover, the incorporation of the anesthetic into DMPC bilayers with or without cholesterol results in a reduction of the lipid order parameters both in the plateau and in the tail regions of the acyl chains, this effect being greater with the charged form of the anesthetic

  17. Elastic strain relaxation in interfacial dislocation patterns: II. From long- and short-range interactions to local reactions

    Science.gov (United States)

    Vattré, A.

    2017-08-01

    The long- and short-range interactions as well as planar reactions between two infinitely periodic sets of crossing dislocations are investigated using anisotropic elasticity theory in face- (fcc) and body- (bcc) centered cubic materials. Two preliminary cases are proposed to examine the substantial changes in the elastic stress states and the corresponding strain energies due to a slight rearrangement in the internal dislocation geometries and characters. In general, significant differences and discrepancies resulting from the considered cubic crystal structure and the approximation of isotropic elasticity are exhibited. In a third scenario, special attention is paid to connecting specific internal dislocation structures from the previous cases with non-equilibrium configurations predicted by the quantized Frank-Bilby equation for the (111) fcc and (110) bcc twist grain boundaries. The present solutions lead to the formation of energetically favorable dislocation junctions with non-randomly strain-relaxed configurations of lower energy. In particular, the local dislocation interactions and reactions form equilibrium hexagonal-shaped patterns with planar three-fold dislocation nodes without producing spurious far-field stresses.Numerical application results are presented from a selection of cubic metals including aluminum, copper, tantalum, and niobium. In contrast to the fcc materials, asymmetric dislocation nodes occur in the anisotropic bcc cases, within which the minimum-energy paths for predicting the fully strain-relaxed dislocation patterns depend on the Zener anisotropic factor with respect to unity. The associated changes in the dislocation structures as well as the removal of the elastic strain energy upon relaxations are quantified and also discussed.

  18. Interaction between Cities and Climate Change: Modelling Urban Morphology and Local Urban Planning Scenarios from Open Datasets across European Cities

    Science.gov (United States)

    Thomas, Bart; Stevens, Catherine; Grommen, Mart

    2015-04-01

    Cities are characterised by a large spatiotemporal diversity of local climates induced by a superposition of various factors and processes interacting at global and regional scales but also at the micro level such as the urban heat island effect. As urban areas are known as 'hot spots' prone to climate and its variability over time leading to changes in the severity and occurrence of extreme events such as heat waves, it is of crucial importance to capture the spatial heterogeneity resulting from variations in land use land cover (LULC) and urban morphology in an effective way to drive local urban climate simulations. The first part of the study conducted in the framework of the NACLIM FP7 project funded by the European Commission focusses on the extraction of land surface parameters linked to urban morphology characteristics from detailed 3D city models and their relationship with openly accessible European datasets such as the degree of soil sealing and disaggregated population densities from the European Environment Agency (EEA) and the Joint Research Centre (JRC). While it has been demonstrated that good correlations can be found between those datasets and the planar and frontal area indices, the present work has expanded the research to other urban morphology parameters including the average and variation of the building height and the sky view factor. Correlations up to 80% have been achieved depending on the considered parameter and the specific urban area including the cities of Antwerp (Belgium), Berlin (Germany) and Almada (Portugal) represented by different climate and urban characteristics. Moreover, the transferability of the established relations has been investigated across the various cities. Secondly, a flexible and scalable approach as a function of the required the level of detail has been elaborated to update the various morphology parameters in case of integration with urban planning data to analyse the local impact of future land use scenarios

  19. Subcellular localization, interactions and dynamics of the phage-shock protein-like Lia response in Bacillus subtilis.

    Science.gov (United States)

    Domínguez-Escobar, Julia; Wolf, Diana; Fritz, Georg; Höfler, Carolin; Wedlich-Söldner, Roland; Mascher, Thorsten

    2014-05-01

    The liaIH operon of Bacillus subtilis is the main target of the envelope stress-inducible two-component system LiaRS. Here, we studied the localization, interaction and cellular dynamics of Lia proteins to gain insights into the physiological role of the Lia response. We demonstrate that LiaI serves as the membrane anchor for the phage-shock protein A homologue LiaH. Under non-inducing conditions, LiaI locates in highly motile membrane-associated foci, while LiaH is dispersed throughout the cytoplasm. Under stress conditions, both proteins are strongly induced and colocalize in numerous distinct static spots at the cytoplasmic membrane. This behaviour is independent of MreB and does also not correlate with the stalling of the cell wall biosynthesis machinery upon antibiotic inhibition. It can be induced by antibiotics that interfere with the membrane-anchored steps of cell wall biosynthesis, while compounds that inhibit the cytoplasmic or extracytoplasmic steps do not trigger this response. Taken together, our data are consistent with a model in which the Lia system scans the cytoplasmic membrane for envelope perturbations. Upon their detection, LiaS activates the cognate response regulator LiaR, which in turn strongly induces the liaIH operon. Simultaneously, LiaI recruits LiaH to the membrane, presumably to protect the envelope and counteract the antibiotic-induced damage. © 2014 John Wiley & Sons Ltd.

  20. An integrated protein localization and interaction map for Potato yellow dwarf virus, type species of the genus Nucleorhabdovirus

    International Nuclear Information System (INIS)

    Bandyopadhyay, Anindya; Kopperud, Kristin; Anderson, Gavin; Martin, Kathleen; Goodin, Michael

    2010-01-01

    The genome of Potato yellow dwarf virus (PYDV; Nucleorhabdovirus type species) was determined to be 12,875 nucleotides (nt). The antigenome is organized into seven open reading frames (ORFs) ordered 3'-N-X-P-Y-M-G-L-5', which likely encode the nucleocapsid, phospho, movement, matrix, glyco and RNA-dependent RNA polymerase proteins, respectively, except for X, which is of unknown function. The ORFs are flanked by a 3' leader RNA of 149 nt and a 5' trailer RNA of 97 nt, and are separated by conserved intergenic junctions. Phylogenetic analyses indicated that PYDV is closely related to other leafhopper-transmitted rhabdoviruses. Functional protein assays were used to determine the subcellular localization of PYDV proteins. Surprisingly, the M protein was able to induce the intranuclear accumulation of the inner nuclear membrane in the absence of any other viral protein. Finally, bimolecular fluorescence complementation was used to generate the most comprehensive protein interaction map for a plant-adapted rhabdovirus to date.

  1. New Theoretical Developments in Exploring Electronically Excited States: Including Localized Configuration Interaction Singles and Application to Large Helium Clusters

    Science.gov (United States)

    Closser, Kristina Danielle

    This thesis presents new developments in excited state electronic structure theory. Contrasted with the ground state, the electronically excited states of atoms and molecules often are unstable and have short lifetimes, exhibit a greater diversity of character and are generally less well understood. The very unusual excited states of helium clusters motivated much of this work. These clusters consist of large numbers of atoms (experimentally 103--109 atoms) and bands of nearly degenerate excited states. For an isolated atom the lowest energy excitation energies are from 1s → 2s and 1s → 2 p transitions, and in clusters describing the lowest energy band minimally requires four states per atom. In the ground state the clusters are weakly bound by van der Waals interactions, however in the excited state they can form well-defined covalent bonds. The computational cost of quantum chemical calculations rapidly becomes prohibitive as the size of the systems increase. Standard excited-state methods such as configuration interaction singles (CIS) and time-dependent density functional theory (TD-DFT) can be used with ≈100 atoms, and are optimized to treat only a few states. Thus, one of our primary aims is to develop a method which can treat these large systems with large numbers of nearly degenerate excited states. Additionally, excited states are generally formed far from their equilibrium structures. Vertical excitations from the ground state induce dynamics in the excited states. Thus, another focus of this work is to explore the results of these forces and the fate of the excited states. Very little was known about helium cluster excited states when this work began, thus we first investigated the excitations in small helium clusters consisting of 7 or 25 atoms using CIS. The character of these excited states was determined using attachment/detachment density analysis and we found that in the n = 2 manifold the excitations could generally be interpreted as

  2. The local structure and magnetic interactions between Fe3+ and V4+ ions in lithium–phosphate glasses

    International Nuclear Information System (INIS)

    Andronache, Constantin I.

    2012-01-01

    Electron Paramagnetic Resonance (EPR) provides a useful tool not only as a probe of local structure and short range order in glasses, but also of magnetic interactions in the glasses containing suitable magnetic ions. We have analyzed the spectra of xFe 2 O 3 ·(100 − x)[P 2 O 5 ·Li 2 O] and x(Fe 2 O 3 ·V 2 O 5 )·(100 − x)[P 2 O 5 ·Li 2 O] glass systems, with 0 2 O 5 ·Li 2 O] stands for 50Li 2 O·50P 2 O 5 glass composition. For samples x > 50 mol % a study indicates the presence of crystalline α Fe 2 O 3 in the glasses. Observed spectra have resonance lines centered at g ∼ 4.3 and g ∼ 2.0 typical for Fe 3+ and V 4+ ions present in the oxide glasses. For low contend of transition metal (TM) oxides (Fe 2 O 3 or V 2 O 5 ·Fe 2 O 3 ) the spectra present a hyperfine structure typical for isolated V 4+ ions. With the increasing of TM content, the EPR absorption signal showing hyperfine structure superposed by a broad line without hyperfine structure characteristic for clustered ions. At high TM content, the vanadium hyperfine structure disappears and only the broad line can be observed in the spectra. -- Highlights: ► Lithium phosphate glass with Fe and V ions were investigated by means of EPR. ► The composition dependence of line intensity were investigated. ► The spin Hamiltonian parameters for VO 2+ were evaluated.

  3. Nitrosative/oxidative stress conditions regulate thioredoxin-interacting protein (TXNIP) expression and thioredoxin-1 (TRX-1) nuclear localization.

    Science.gov (United States)

    Ogata, Fernando Toshio; Batista, Wagner Luiz; Sartori, Adriano; Gesteira, Tarsis Ferreira; Masutani, Hiroshi; Arai, Roberto Jun; Yodoi, Junji; Stern, Arnold; Monteiro, Hugo Pequeno

    2013-01-01

    Thioredoxin (TRX-1) is a multifunctional protein that controls the redox status of other proteins. TRX-1 can be found in the extracellular milieu, cytoplasm and nucleus, and it has distinct functions in each environment. Previously, we studied the intracellular localization of TRX-1 and its relationship with the activation of the p21Ras-ERK1/2 MAP Kinases signaling pathway. In situations where this pathway was activated by stress conditions evoked by a nitrosothiol, S-nitroso-N-acetylpenicillamine (SNAP), TRX-1 accumulated in the nuclear compartment due to nitrosylation of p21Ras and activation of downstream ERK1/2 MAP kinases. Presently, we demonstrate that ERK1/2 MAP Kinases activation and spatial distribution within cells trigger TRX-1 nuclear translocation through down-regulation of the physiological inhibitor of TRX-1, Thioredoxin Interacting Protein (TXNIP). Once activated by the oxidants, SNAP and H₂O₂, the ERK1/2 MAP kinases migrate to the nucleus. This is correlated with down-regulation of TXNIP. In the presence of the MEK inhibitors (PD98059 or UO126), or in cells transfected with the Protein Enriched in Astrocytes (PEA-15), a cytoplasmic anchor of ERK1/2 MAP kinases, TRX-1 nuclear migration and TXNIP down-regulation are no longer observed in cells exposed to oxidants. On the other hand, over-expression of TXNIP abolishes nuclear migration of TRX-1 under nitrosative/oxidative stress conditions, whereas gene silencing of TXNIP facilitates nuclear migration even in the absence of stress conditions. Studies based on the TXNIP promoter support this regulation. In conclusion, changes in TRX-1 compartmentalization under nitrosative/oxidative stress conditions are dependent on the expression levels of TXNIP, which are regulated by cellular compartmentalization and activation of the ERK1/2 MAP kinases.

  4. Nitrosative/oxidative stress conditions regulate thioredoxin-interacting protein (TXNIP expression and thioredoxin-1 (TRX-1 nuclear localization.

    Directory of Open Access Journals (Sweden)

    Fernando Toshio Ogata

    Full Text Available Thioredoxin (TRX-1 is a multifunctional protein that controls the redox status of other proteins. TRX-1 can be found in the extracellular milieu, cytoplasm and nucleus, and it has distinct functions in each environment. Previously, we studied the intracellular localization of TRX-1 and its relationship with the activation of the p21Ras-ERK1/2 MAP Kinases signaling pathway. In situations where this pathway was activated by stress conditions evoked by a nitrosothiol, S-nitroso-N-acetylpenicillamine (SNAP, TRX-1 accumulated in the nuclear compartment due to nitrosylation of p21Ras and activation of downstream ERK1/2 MAP kinases. Presently, we demonstrate that ERK1/2 MAP Kinases activation and spatial distribution within cells trigger TRX-1 nuclear translocation through down-regulation of the physiological inhibitor of TRX-1, Thioredoxin Interacting Protein (TXNIP. Once activated by the oxidants, SNAP and H₂O₂, the ERK1/2 MAP kinases migrate to the nucleus. This is correlated with down-regulation of TXNIP. In the presence of the MEK inhibitors (PD98059 or UO126, or in cells transfected with the Protein Enriched in Astrocytes (PEA-15, a cytoplasmic anchor of ERK1/2 MAP kinases, TRX-1 nuclear migration and TXNIP down-regulation are no longer observed in cells exposed to oxidants. On the other hand, over-expression of TXNIP abolishes nuclear migration of TRX-1 under nitrosative/oxidative stress conditions, whereas gene silencing of TXNIP facilitates nuclear migration even in the absence of stress conditions. Studies based on the TXNIP promoter support this regulation. In conclusion, changes in TRX-1 compartmentalization under nitrosative/oxidative stress conditions are dependent on the expression levels of TXNIP, which are regulated by cellular compartmentalization and activation of the ERK1/2 MAP kinases.

  5. Contribution of the residue at position 4 within classical nuclear localization signals to modulating interaction with importins and nuclear targeting.

    Science.gov (United States)

    Smith, Kate M; Di Antonio, Veronica; Bellucci, Luca; Thomas, David R; Caporuscio, Fabiana; Ciccarese, Francesco; Ghassabian, Hanieh; Wagstaff, Kylie M; Forwood, Jade K; Jans, David A; Palù, Giorgio; Alvisi, Gualtiero

    2018-08-01

    Nuclear import involves the recognition by importin (IMP) superfamily members of nuclear localization signals (NLSs) within protein cargoes destined for the nucleus, the best understood being recognition of classical NLSs (cNLSs) by the IMPα/β1 heterodimer. Although the cNLS consensus [K-(K/R)-X-(K/R) for positions P2-P5] is generally accepted, recent studies indicated that the contribution made by different residues at the P4 position can vary. Here, we apply a combination of microscopy, molecular dynamics, crystallography, in vitro binding, and bioinformatics approaches to show that the nature of residues at P4 indeed modulates cNLS function in the context of a prototypical Simian Virus 40 large tumor antigen-derived cNLS (KKRK, P2-5). Indeed, all hydrophobic substitutions in place of R impaired binding to IMPα and nuclear targeting, with the largest effect exerted by a G residue at P4. Substitution of R with neutral hydrophobic residues caused the loss of electrostatic and van der Waals interactions between the P4 residue side chains and IMPα. Detailed bioinformatics analysis confirmed the importance of the P4 residue for cNLS function across the human proteome, with specific residues such as G being associated with low activity. Furthermore, we validate our findings for two additional cNLSs from human cytomegalovirus (HCMV) DNA polymerase catalytic subunit UL54 and processivity factor UL44, where a G residue at P4 results in a 2-3-fold decrease in NLS activity. Our results thus showed that the P4 residue makes a hitherto poorly appreciated contribution to nuclear import efficiency, which is essential to determining the precise nuclear levels of cargoes. Copyright © 2018 Elsevier B.V. All rights reserved.

  6. Identification of a novel nuclear localization signal and speckle-targeting sequence of tuftelin-interacting protein 11, a splicing factor involved in spliceosome disassembly

    Energy Technology Data Exchange (ETDEWEB)

    Tannukit, Sissada [Center for Craniofacial Molecular Biology, University of Southern California, 2250 Alcazar Street, CSA Rm103, Los Angeles, CA 90033-1004 (United States); Crabb, Tara L.; Hertel, Klemens J. [Department of Microbiology and Molecular Genetics, University of California Irvine, Irvine, CA 92697-4025 (United States); Wen, Xin [Center for Craniofacial Molecular Biology, University of Southern California, 2250 Alcazar Street, CSA Rm103, Los Angeles, CA 90033-1004 (United States); Jans, David A. [Department of Biochemistry and Molecular Biology, Nuclear Signalling Laboratory, Monash University, Clayton, Victoria 3800 (Australia); Paine, Michael L., E-mail: paine@usc.edu [Center for Craniofacial Molecular Biology, University of Southern California, 2250 Alcazar Street, CSA Rm103, Los Angeles, CA 90033-1004 (United States)

    2009-12-18

    Tuftelin-interacting protein 11 (TFIP11) is a protein component of the spliceosome complex that promotes the release of the lariat-intron during late-stage splicing through a direct recruitment and interaction with DHX15/PRP43. Expression of TFIP11 is essential for cell and organismal survival. TFIP11 contains a G-patch domain, a signature motif of RNA-processing proteins that is responsible for TFIP11-DHX15 interactions. No other functional domains within TFIP11 have been described. TFIP11 is localized to distinct speckled regions within the cell nucleus, although excluded from the nucleolus. In this study sequential C-terminal deletions and mutational analyses have identified two novel protein elements in mouse TFIP11. The first domain covers amino acids 701-706 (VKDKFN) and is an atypical nuclear localization signal (NLS). The second domain is contained within amino acids 711-735 and defines TFIP11's distinct speckled nuclear localization. The identification of a novel TFIP11 nuclear speckle-targeting sequence (TFIP11-STS) suggests that this domain directly interacts with additional spliceosomal components. These data help define the mechanism of nuclear/nuclear speckle localization of the splicing factor TFIP11, with implications for it's function.

  7. INTERACT

    DEFF Research Database (Denmark)

    Jochum, Elizabeth; Borggreen, Gunhild; Murphey, TD

    This paper considers the impact of visual art and performance on robotics and human-computer interaction and outlines a research project that combines puppetry and live performance with robotics. Kinesics—communication through movement—is the foundation of many theatre and performance traditions ...

  8. Variation Process of Radiation Belt Electron Fluxes due to Interaction With Chorus and EMIC Rising-tone Emissions Localized in Longitude

    Science.gov (United States)

    Kubota, Y.; Omura, Y.

    2017-12-01

    Using results of test particle simulations of a large number of electrons interacting with a pair of chorus emissions, we create Green's functions to model the electron distribution function after all of the possible interactions with the waves [Omura et al., 2015]. Assuming that the waves are generated in a localized range of longitudes in the dawn side, we repeat taking the convolution integral of the Green's function with the distribution function of the electrons injected into the generation region of the localized waves. From numerical and theoretical analyses, we find that electron acceleration process only takes place efficiently below 4 MeV. Because extremely relativistic electrons go through the wave generation region rapidly due to grad-B0 and curvature drift, they don't have enough interaction time to be accelerated. In setting up the electrons after all interaction with chorus emissions as initial electron distribution function, we also compute the loss process of radiation belt electron fluxes due to interaction with EMIC rising-tone emissions generated in a localized range of longitudes in the dusk side [Kubota and Omura,2017]. References: (1) Omura, Y., Y. Miyashita, M. Yoshikawa, D. Summers, M. Hikishima, Y. Ebihara, and Y. Kubota (2015), Formation process of relativistic electron flux through interaction with chorus emissions in the Earth's inner magnetosphere, J. Geophys. Res. Space Physics, 120, 9545-9562, doi:10.1002/2015JA021563. (2) Kubota, Y., and Y. Omura (2017), Rapid precipitation of radiation belt electrons induced by EMIC rising tone emissions localized in longitude inside and outside the plasmapause, J. Geophys. Res. Space Physics, 122, 293-309, doi:10.1002/2016JA023267.

  9. Air-sea heat fluxes associated to mesoscale eddies in the Southwestern Atlantic Ocean and their dependence on different regional conditions

    Science.gov (United States)

    Leyba, Inés M.; Saraceno, Martín; Solman, Silvina A.

    2017-10-01

    Heat fluxes between the ocean and the atmosphere largely represent the link between the two media. A possible mechanism of interaction is generated by mesoscale ocean eddies. In this work we evaluate if eddies in Southwestern Atlantic (SWA) Ocean may significantly affect flows between the ocean and the atmosphere. Atmospherics conditions associated with eddies were examined using data of sea surface temperature (SST), sensible (SHF) and latent heat flux (LHF) from NCEP-CFSR reanalysis. On average, we found that NCEP-CFSR reanalysis adequately reflects the variability expected from eddies in the SWA, considering the classical eddy-pumping theory: anticyclonic (cyclonic) eddies cause maximum positive (negative) anomalies with maximum mean anomalies of 0.5 °C (-0.5 °C) in SST, 6 W/m2 (-4 W/m2) in SHF and 12 W/m2 (-9 W/m2) in LHF. However, a regional dependence of heat fluxes associated to mesoscale cyclonic eddies was found: in the turbulent Brazil-Malvinas Confluence (BMC) region they are related with positive heat flux anomaly (ocean heat loss), while in the rest of the SWA they behave as expected (ocean heat gain). We argue that eddy-pumping do not cool enough the center of the cyclonic eddies in the BMC region simply because most of them trapped very warm waters when they originate in the subtropics. The article therefore concludes that in the SWA: (1) a robust link exists between the SST anomalies generated by eddies and the local anomalous heat flow between the ocean and the atmosphere; (2) in the BMC region cyclonic eddies are related with positive heat anomalies, contrary to what is expected.

  10. Electronic hole localization in rutile and anatase TiO2 - Self-interaction correction in Delta-SCF DFT

    DEFF Research Database (Denmark)

    Zawadzki, Pawel; Jacobsen, Karsten Wedel; Rossmeisl, Jan

    2011-01-01

    We study electronic hole localization in rutile and anatase titanium dioxide by means of Δ-Self-Consistent Field Density Functional Theory. In order to compare stabilities of the localized and the delocalized hole states we introduce a simple correction to the wrong description of the localizatio...

  11. The critical spot eraser—a method to interactively control the correction of local hot and cold spots in IMRT planning

    International Nuclear Information System (INIS)

    Süss, Philipp; Bortz, Michael; Küfer, Karl-Heinz; Thieke, Christian

    2013-01-01

    Common problems in inverse radiotherapy planning are localized dose insufficiencies like hot spots in organs at risk or cold spots inside targets. These are hard to correct since the optimization is based on global evaluations like maximum/minimum doses, equivalent uniform doses or dose–volume constraints for whole structures. In this work, we present a new approach to locally correct the dose of any given treatment plan. Once a treatment plan has been found that is acceptable in general but requires local corrections, these areas are marked by the planner. Then the system generates new plans that fulfil the local dose goals. Consequently, it is possible to interactively explore all plans between the locally corrected plans and the original treatment plan, allowing one to exactly adjust the degree of local correction and how the plan changes overall. Both the amount (in Gy) and the size of the local dose change can be navigated. The method is introduced formally as a new mathematical optimization setting, and is evaluated using a clinical example of a meningioma at the base of the skull. It was possible to eliminate a hot spot outside the target volume while controlling the dose changes to all other parts of the treatment plan. The proposed method has the potential to become the final standard step of inverse treatment planning. For more information on this article, see medicalphysicsweb.org (paper)

  12. Protein Kinase A (PKA) Type I Interacts with P-Rex1, a Rac Guanine Nucleotide Exchange Factor: EFFECT ON PKA LOCALIZATION AND P-Rex1 SIGNALING.

    Science.gov (United States)

    Chávez-Vargas, Lydia; Adame-García, Sendi Rafael; Cervantes-Villagrana, Rodolfo Daniel; Castillo-Kauil, Alejandro; Bruystens, Jessica G H; Fukuhara, Shigetomo; Taylor, Susan S; Mochizuki, Naoki; Reyes-Cruz, Guadalupe; Vázquez-Prado, José

    2016-03-18

    Morphology of migrating cells is regulated by Rho GTPases and fine-tuned by protein interactions and phosphorylation. PKA affects cell migration potentially through spatiotemporal interactions with regulators of Rho GTPases. Here we show that the endogenous regulatory (R) subunit of type I PKA interacts with P-Rex1, a Rac guanine nucleotide exchange factor that integrates chemotactic signals. Type I PKA holoenzyme interacts with P-Rex1 PDZ domains via the CNB B domain of RIα, which when expressed by itself facilitates endothelial cell migration. P-Rex1 activation localizes PKA to the cell periphery, whereas stimulation of PKA phosphorylates P-Rex1 and prevents its activation in cells responding to SDF-1 (stromal cell-derived factor 1). The P-Rex1 DEP1 domain is phosphorylated at Ser-436, which inhibits the DH-PH catalytic cassette by direct interaction. In addition, the P-Rex1 C terminus is indirectly targeted by PKA, promoting inhibitory interactions independently of the DEP1-PDZ2 region. A P-Rex1 S436A mutant construct shows increased RacGEF activity and prevents the inhibitory effect of forskolin on sphingosine 1-phosphate-dependent endothelial cell migration. Altogether, these results support the idea that P-Rex1 contributes to the spatiotemporal localization of type I PKA, which tightly regulates this guanine exchange factor by a multistep mechanism, initiated by interaction with the PDZ domains of P-Rex1 followed by direct phosphorylation at the first DEP domain and putatively indirect regulation of the C terminus, thus promoting inhibitory intramolecular interactions. This reciprocal regulation between PKA and P-Rex1 might represent a key node of integration by which chemotactic signaling is fine-tuned by PKA. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  13. The LSD1-Type Zinc Finger Motifs of Pisum sativa LSD1 Are a Novel Nuclear Localization Signal and Interact with Importin Alpha

    OpenAIRE

    He, Shanping; Huang, Kuowei; Zhang, Xu; Yu, Xiangchun; Huang, Ping; An, Chengcai

    2011-01-01

    BACKGROUND: Genetic studies of the Arabidopsis mutant lsd1 highlight the important role of LSD1 in the negative regulation of plant programmed cell death (PCD). Arabidopsis thaliana LSD1 (AtLSD1) contains three LSD1-type zinc finger motifs, which are involved in the protein-protein interaction. METHODOLOGY/PRINCIPAL FINDINGS: To further understand the function of LSD1, we have analyzed cellular localization and functional localization domains of Pisum sativa LSD1 (PsLSD1), which is a homolog ...

  14. Local particle densities and global multiplicities in central heavy ion interactions at 3.7, 14.6, 60 and 200 A GeV

    International Nuclear Information System (INIS)

    Adamovich, M.I.; Alexandrov, Y.A.; Aggarwal, M.M.

    1992-03-01

    The energy and centrality dependence of local particle pseudorapidity densities as well as validity of various parametrizations of the distributions are examined. The dispersion, σ, of the rapidity density distribution of produced particles varies slowly with centrality and is 0.80, 0.98, 1.21 and 1.41 for central interactions at 3.7, 14.6, 60 and 200 A GeV incident energy, respectively. σ is found to be independent of the size of the interacting system at fixed energy. A novel way of representing the window dependence of the multiplicity as normalized variance versus inverse average multiplicity is outlined. (au)

  15. Local particle densities and global multiplicities in central heavy ion interactions at 3.7, 14.6, 60 and 200 A GeV

    International Nuclear Information System (INIS)

    Adamovich, M.I.; Alexandrov, Y.A.; Chernyavsky, M.M.; Gerassimov, S.G.; Larionova, V.G.; Maslennikova, N.V.; Orlova, G.I.; Peresadko, N.G.; Rappoport, V.M.; Salmanova, N.A.; Tretyakova, M.I.; Aggarwal, M.M.; Arora, R.; Bhatia, V.S.; Mittra, I.S.; Andreeva, N.P.; Anson, Z.V.; Bubnov, V.I.; Chasnikov, I.Y.; Eligbaeva, G.Z.; Eremenko, L.E.; Gaitinov, A.S.; Kalyachkina, G.S.; Kanygina, E.K.; Lepetan, V.N.; Shakhova, T.I.; Avetyan, F.A.; Marutyan, N.A.; Sarkisova, L.G.; Sarkisyan, V.R.; Badyal, S.K.; Bhasin, A.; Gupta, V.K.; Kachroo, S.; Kaul, G.L.; Kitroo, S.; Mangotra, L.K.; Rao, N.K.; Basova, E.; Nasrulaeva, H.; Nasyrov, S.H.; Petrov, N.V.; Qarshiev, D.A.; Trofimova, T.P.; Tuleeva, U.; Bhalla, K.B.; Gupta, S.K.; Kumar, V.; Lal, P.; Lokanathan, S.; Mookerjee, S.; Palsania, H.S.; Raniwala, R.; Raniwala, S.; Bogdanaov, V.G.; Plyushchev, V.A.; Solovjeva, Z.I.; Burnett, T.H.; Grote, J.; Lord, J.; Skelding, D.; Wilkes, R.J.; Chernova, L.P.; Gulamov, K.G.; Lukicheva, N.S.; Navotny, V.S.; Saidkhanov, N.; Shpilev, S.N.; Surin, E.L.; Svechnikova, L.N.; Zhochova, S.I.; Ganssauge, E.R.; Rhee, J.T.; Garpman, S.; Jakobsson, B.; Nystrand, J.; Otterlund, I.; Soederstroem, K.; Stenlund, E.; Heckman, H.H.; Cai, X.; Huang, H.; Liu, L.S.; Qian, W.Y.; Wang, H.Q.; Zhou, D.C.; Judek, B.; Just, L.; Tothova, M.; Karabova, M.; Vokal, S.; Krasnov, S.A.; Kulikova, S.; Maksimkina, T.N.; Shabratova, G.S.; Tolstov, K.D.; Luo, S.B.; Qin, Y.M.; Zhang, D.H.; Weng, Z.Q.; Xia, Y.L.; Xu, G.F.; Zheng, P.Y.

    1992-01-01

    The energy and centrality dependence of local particle pseudorapidity densities as well as validity of various parameterizations of the distributions are examined. The dispersion, σ, of the rapidity density distribution of produced particles varies slowly with centrality and is 0.80, 0.98, 1.21 and 1.41 for central interactions at 3.7, 14.6, 60 and 200 A GeV incident energy, respectively, σ is found to be independent of the size of the interacting system at fixed energy. A novel, way of representing the window dependence of the multiplicity as normalized variance versus inverse average multiplicity is outlined. (orig.)

  16. Interaction between local and regional pollution during Escompte 2001: impact on surface ozone concentrations (IOP2a and 2b)

    Science.gov (United States)

    Cousin, F.; Tulet, P.; Rosset, R.

    2005-03-01

    Escompte, a European programme which took place in the Marseille region in June-July 2001, has been designed as an exhaustive database to be used for the development and validation of air pollution models. The air quality Mesoscale NonHydrostatic Chemistry model (Meso-NH-C) is used to simulate 2 days of an Intensive Observation Period (IOP) documented during the Escompte campaign, June 23 and 24, 2001. We first study the synoptic and local meteorological situation on June 23 and 24, using surface and aircraft measurements. Then, we focus on the pollution episode of June 24. This study emphasizes the deep impact of synoptic and local dynamics on observed ozone concentrations. It is shown that ozone levels are due both to regional and local factors, with highlights of the importance of ozone layering. More generally this confirms, even in an otherwise predominant local sea-breeze regime, the need to consider larger scale regional pollutant transport.

  17. Network models provide insights into how oriens–lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations

    Directory of Open Access Journals (Sweden)

    Katie A Ferguson

    2015-08-01

    Full Text Available Hippocampal theta is a 4-12 Hz rhythm associated with episodic memory, and although it has been studied extensively, the cellular mechanisms underlying its generation are unclear. The complex interactions between different interneuron types, such as those between oriens--lacunosum-moleculare (OLM interneurons and bistratified cells (BiCs, make their contribution to network rhythms difficult to determine experimentally. We created network models that are tied to experimental work at both cellular and network levels to explore how these interneuron interactions affect the power of local oscillations. Our cellular models were constrained with properties from patch clamp recordings in the CA1 region of an intact hippocampus preparation in vitro. Our network models are composed of three different types of interneurons: parvalbumin-positive (PV+ basket and axo-axonic cells (BC/AACs, PV+ BiCs, and somatostatin-positive OLM cells. Also included is a spatially extended pyramidal cell model to allow for a simplified local field potential representation, as well as experimentally-constrained, theta frequency synaptic inputs to the interneurons. The network size, connectivity, and synaptic properties were constrained with experimental data. To determine how the interactions between OLM cells and BiCs could affect local theta power, we explored a number of OLM-BiC connections and connection strengths.We found that our models operate in regimes in which OLM cells minimally or strongly affected the power of network theta oscillations due to balances that, respectively, allow compensatory effects or not. Inactivation of OLM cells could result in no change or even an increase in theta power. We predict that the dis-inhibitory effect of OLM cells to BiCs to pyramidal cell interactions plays a critical role in the power of network theta oscillations. Our network models reveal a dynamic interplay between different classes of interneurons in influencing local theta

  18. How well does wind speed predict air-sea gas transfer in the sea ice zone? A synthesis of radon deficit profiles in the upper water column of the Arctic Ocean

    Science.gov (United States)

    Loose, B.; Kelly, R. P.; Bigdeli, A.; Williams, W.; Krishfield, R.; Rutgers van der Loeff, M.; Moran, S. B.

    2017-05-01

    We present 34 profiles of radon-deficit from the ice-ocean boundary layer of the Beaufort Sea. Including these 34, there are presently 58 published radon-deficit estimates of air-sea gas transfer velocity (k) in the Arctic Ocean; 52 of these estimates were derived from water covered by 10% sea ice or more. The average value of k collected since 2011 is 4.0 ± 1.2 m d-1. This exceeds the quadratic wind speed prediction of weighted kws = 2.85 m d-1 with mean-weighted wind speed of 6.4 m s-1. We show how ice cover changes the mixed-layer radon budget, and yields an "effective gas transfer velocity." We use these 58 estimates to statistically evaluate the suitability of a wind speed parameterization for k, when the ocean surface is ice covered. Whereas the six profiles taken from the open ocean indicate a statistically good fit to wind speed parameterizations, the same parameterizations could not reproduce k from the sea ice zone. We conclude that techniques for estimating k in the open ocean cannot be similarly applied to determine k in the presence of sea ice. The magnitude of k through gaps in the ice may reach high values as ice cover increases, possibly as a result of focused turbulence dissipation at openings in the free surface. These 58 profiles are presently the most complete set of estimates of k across seasons and variable ice cover; as dissolved tracer budgets they reflect air-sea gas exchange with no impact from air-ice gas exchange.

  19. Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses

    Energy Technology Data Exchange (ETDEWEB)

    Bejerman, Nicolás, E-mail: n.bejerman@uq.edu.au [Instituto de Patología Vegetal (IPAVE), Centro de Investigaciones Agropecuarias (CIAP), Instituto Nacional de Tecnología Agropecuaria INTA, Camino a 60 Cuadras k 5,5, Córdoba X5020ICA (Argentina); Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD 4072 (Australia); Giolitti, Fabián; Breuil, Soledad de; Trucco, Verónica; Nome, Claudia; Lenardon, Sergio [Instituto de Patología Vegetal (IPAVE), Centro de Investigaciones Agropecuarias (CIAP), Instituto Nacional de Tecnología Agropecuaria INTA, Camino a 60 Cuadras k 5,5, Córdoba X5020ICA (Argentina); Dietzgen, Ralf G. [Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD 4072 (Australia)

    2015-09-15

    Summary: We have determined the full-length 14,491-nucleotide genome sequence of a new plant rhabdovirus, alfalfa dwarf virus (ADV). Seven open reading frames (ORFs) were identified in the antigenomic orientation of the negative-sense, single-stranded viral RNA, in the order 3′-N-P-P3-M-G-P6-L-5′. The ORFs are separated by conserved intergenic regions and the genome coding region is flanked by complementary 3′ leader and 5′ trailer sequences. Phylogenetic analysis of the nucleoprotein amino acid sequence indicated that this alfalfa-infecting rhabdovirus is related to viruses in the genus Cytorhabdovirus. When transiently expressed as GFP fusions in Nicotiana benthamiana leaves, most ADV proteins accumulated in the cell periphery, but unexpectedly P protein was localized exclusively in the nucleus. ADV P protein was shown to have a homotypic, and heterotypic nuclear interactions with N, P3 and M proteins by bimolecular fluorescence complementation. ADV appears unique in that it combines properties of both cytoplasmic and nuclear plant rhabdoviruses. - Highlights: • The complete genome of alfalfa dwarf virus is obtained. • An integrated localization and interaction map for ADV is determined. • ADV has a genome sequence similarity and evolutionary links with cytorhabdoviruses. • ADV protein localization and interaction data show an association with the nucleus. • ADV combines properties of both cytoplasmic and nuclear plant rhabdoviruses.

  20. Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses

    International Nuclear Information System (INIS)

    Bejerman, Nicolás; Giolitti, Fabián; Breuil, Soledad de; Trucco, Verónica; Nome, Claudia; Lenardon, Sergio; Dietzgen, Ralf G.

    2015-01-01

    Summary: We have determined the full-length 14,491-nucleotide genome sequence of a new plant rhabdovirus, alfalfa dwarf virus (ADV). Seven open reading frames (ORFs) were identified in the antigenomic orientation of the negative-sense, single-stranded viral RNA, in the order 3′-N-P-P3-M-G-P6-L-5′. The ORFs are separated by conserved intergenic regions and the genome coding region is flanked by complementary 3′ leader and 5′ trailer sequences. Phylogenetic analysis of the nucleoprotein amino acid sequence indicated that this alfalfa-infecting rhabdovirus is related to viruses in the genus Cytorhabdovirus. When transiently expressed as GFP fusions in Nicotiana benthamiana leaves, most ADV proteins accumulated in the cell periphery, but unexpectedly P protein was localized exclusively in the nucleus. ADV P protein was shown to have a homotypic, and heterotypic nuclear interactions with N, P3 and M proteins by bimolecular fluorescence complementation. ADV appears unique in that it combines properties of both cytoplasmic and nuclear plant rhabdoviruses. - Highlights: • The complete genome of alfalfa dwarf virus is obtained. • An integrated localization and interaction map for ADV is determined. • ADV has a genome sequence similarity and evolutionary links with cytorhabdoviruses. • ADV protein localization and interaction data show an association with the nucleus. • ADV combines properties of both cytoplasmic and nuclear plant rhabdoviruses

  1. PH Domain-Arf G Protein Interactions Localize the Arf-GEF Steppke for Cleavage Furrow Regulation in Drosophila.

    Directory of Open Access Journals (Sweden)

    Donghoon M Lee

    Full Text Available The recruitment of GDP/GTP exchange factors (GEFs to specific subcellular sites dictates where they activate small G proteins for the regulation of various cellular processes. Cytohesins are a conserved family of plasma membrane GEFs for Arf small G proteins that regulate endocytosis. Analyses of mammalian cytohesins have identified a number of recruitment mechanisms for these multi-domain proteins, but the conservation and developmental roles for these mechanisms are unclear. Here, we report how the pleckstrin homology (PH domain of the Drosophila cytohesin Steppke affects its localization and activity at cleavage furrows of the early embryo. We found that the PH domain is necessary for Steppke furrow localization, and for it to regulate furrow structure. However, the PH domain was not sufficient for the localization. Next, we examined the role of conserved PH domain amino acid residues that are required for mammalian cytohesins to bind PIP3 or GTP-bound Arf G proteins. We confirmed that the Steppke PH domain preferentially binds PIP3 in vitro through a conserved mechanism. However, disruption of residues for PIP3 binding had no apparent effect on GFP-Steppke localization and effects. Rather, residues for binding to GTP-bound Arf G proteins made major contributions to this Steppke localization and activity. By analyzing GFP-tagged Arf and Arf-like small G proteins, we found that Arf1-GFP, Arf6-GFP and Arl4-GFP, but not Arf4-GFP, localized to furrows. However, analyses of embryos depleted of Arf1, Arf6 or Arl4 revealed either earlier defects than occur in embryos depleted of Steppke, or no detectable furrow defects, possibly because of redundancies, and thus it was difficult to assess how individual Arf small G proteins affect Steppke. Nonetheless, our data show that the Steppke PH domain and its conserved residues for binding to GTP-bound Arf G proteins have substantial effects on Steppke localization and activity in early Drosophila embryos.

  2. Interference of HTLV-1 Tax Protein with Cell Polarity Regulators: Defining the Subcellular Localization of the Tax-DLG1 Interaction.

    Science.gov (United States)

    Marziali, Federico; Bugnon Valdano, Marina; Brunet Avalos, Clarisse; Moriena, Lucía; Cavatorta, Ana Laura; Gardiol, Daniela

    2017-11-23

    Human T cell leukemia virus (HTLV)-1 Tax (Tax) protein is very important in viral replication and cell transformation. Tax localizes in the nucleus and cytoplasm in association with organelles. Some activities of Tax depend on interactions with PDZ (PSD-95/Discs Large/Z0-1) domain-containing proteins such as Discs large protein 1 (DLG1) which is involved in cell polarity and proliferation. The DLG1 interaction results in a cytoplasmic co-localization pattern resembling vesicular aggregates, the nature of which is still unknown. To further explore the role of PDZ proteins in HTLV-1 cell transformation, we deeply investigated the Tax-DLG1 association. By fluorescence resonance energy transfer (FRET), we detected, for the first time, the direct binding of Tax to DLG1 within the cell. We showed that the interaction specifically affects the cellular distribution of not only DLG1, but also Tax. After studying different cell structures, we demonstrated that the aggregates distribute into the Golgi apparatus in spatial association with the microtubule-organizing center (MTOC). This study contributes to understand the biological significance of Tax-PDZ interactions.

  3. Interference of HTLV-1 Tax Protein with Cell Polarity Regulators: Defining the Subcellular Localization of the Tax-DLG1 Interaction

    Directory of Open Access Journals (Sweden)

    Federico Marziali

    2017-11-01

    Full Text Available Human T cell leukemia virus (HTLV-1 Tax (Tax protein is very important in viral replication and cell transformation. Tax localizes in the nucleus and cytoplasm in association with organelles. Some activities of Tax depend on interactions with PDZ (PSD-95/Discs Large/Z0-1 domain–containing proteins such as Discs large protein 1 (DLG1 which is involved in cell polarity and proliferation. The DLG1 interaction results in a cytoplasmic co-localization pattern resembling vesicular aggregates, the nature of which is still unknown. To further explore the role of PDZ proteins in HTLV-1 cell transformation, we deeply investigated the Tax-DLG1 association. By fluorescence resonance energy transfer (FRET, we detected, for the first time, the direct binding of Tax to DLG1 within the cell. We showed that the interaction specifically affects the cellular distribution of not only DLG1, but also Tax. After studying different cell structures, we demonstrated that the aggregates distribute into the Golgi apparatus in spatial association with the microtubule-organizing center (MTOC. This study contributes to understand the biological significance of Tax-PDZ interactions.

  4. A DGTD method for the numerical modeling of the interaction of light with nanometer scale metallic structures taking into account non-local dispersion effects

    Energy Technology Data Exchange (ETDEWEB)

    Schmitt, Nikolai [Inria, 2004 Route des Lucioles, BP 93, 06902 Sophia Antipolis Cedex (France); Technische Universitaet Darmstadt, Institut fuer Theorie Elektromagnetischer Felder (TEMF), Schlossgartenstr. 8, 64289 Darmstadt (Germany); Scheid, Claire [Inria, 2004 Route des Lucioles, BP 93, 06902 Sophia Antipolis Cedex (France); University of Nice – Sophia Antipolis, Mathematics laboratory, Parc Valrose, 06108 Nice, Cedex 02 (France); Lanteri, Stéphane, E-mail: Stephane.Lanteri@inria.fr [Inria, 2004 Route des Lucioles, BP 93, 06902 Sophia Antipolis Cedex (France); Moreau, Antoine [Institut Pascal, Université Blaise Pascal, 24, avenue des Landais, 63171 Aubière Cedex (France); Viquerat, Jonathan [Inria, 2004 Route des Lucioles, BP 93, 06902 Sophia Antipolis Cedex (France)

    2016-07-01

    The interaction of light with metallic nanostructures is increasingly attracting interest because of numerous potential applications. Sub-wavelength metallic structures, when illuminated with a frequency close to the plasma frequency of the metal, present resonances that cause extreme local field enhancements. Exploiting the latter in applications of interest requires a detailed knowledge about the occurring fields which can actually not be obtained analytically. For the latter mentioned reason, numerical tools are thus an absolute necessity. The insight they provide is very often the only way to get a deep enough understanding of the very rich physics at play. For the numerical modeling of light-structure interaction on the nanoscale, the choice of an appropriate material model is a crucial point. Approaches that are adopted in a first instance are based on local (i.e. with no interaction between electrons) dispersive models, e.g. Drude or Drude–Lorentz models. From the mathematical point of view, when a time-domain modeling is considered, these models lead to an additional system of ordinary differential equations coupled to Maxwell's equations. However, recent experiments have shown that the repulsive interaction between electrons inside the metal makes the response of metals intrinsically non-local and that this effect cannot generally be overlooked. Technological achievements have enabled the consideration of metallic structures in a regime where such non-localities have a significant influence on the structures' optical response. This leads to an additional, in general non-linear, system of partial differential equations which is, when coupled to Maxwell's equations, significantly more difficult to treat. Nevertheless, dealing with a linearized non-local dispersion model already opens the route to numerous practical applications of plasmonics. In this work, we present a Discontinuous Galerkin Time-Domain (DGTD) method able to solve the system

  5. Direct interaction of the Golgi V-ATPase a-subunit isoform with PI(4)P drives localization of Golgi V-ATPases in yeast.

    Science.gov (United States)

    Banerjee, Subhrajit; Kane, Patricia M

    2017-09-15

    Luminal pH and phosphoinositide content are fundamental features of organelle identity. Vacuolar H + -ATPases (V-ATPases) drive organelle acidification in all eukaryotes, and membrane-bound a-subunit isoforms of the V-ATPase are implicated in organelle-specific targeting and regulation. Earlier work demonstrated that the endolysosomal lipid PI(3,5)P 2 activates V-ATPases containing the vacuolar a-subunit isoform in Saccharomyces cerevisiae Here we demonstrate that PI(4)P, the predominant Golgi phosphatidylinositol (PI) species, directly interacts with the cytosolic amino terminal (NT) domain of the yeast Golgi V-ATPase a-isoform Stv1. Lysine-84 of Stv1NT is essential for interaction with PI(4)P in vitro and in vivo, and interaction with PI(4)P is required for efficient localization of Stv1-containing V-ATPases. The cytosolic NT domain of the human V-ATPase a2 isoform specifically interacts with PI(4)P in vitro, consistent with its Golgi localization and function. We propose that NT domains of V o a-subunit isoforms interact specifically with PI lipids in their organelles of residence. These interactions can transmit organelle-specific targeting or regulation information to V-ATPases. © 2017 Banerjee and Kane. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).

  6. Local shifts in floral biotic interactions in habitat edges and their effect on quantity and quality of plant offspring

    Science.gov (United States)

    Fenu, Giuseppe; Bernardo, Liliana

    2017-01-01

    Abstract Spatial shifts in insect fauna due to ecological heterogeneity can severely constrain plant reproduction. Nonetheless, data showing effects of insect visit patterns and intensity of mutualistic and/or antagonistic plant–insect interactions on plant reproduction over structured ecological gradients remain scarce. We investigated how changes in flower-visitor abundance, identity and behaviour over a forest-open habitat gradient affect plant biotic interactions, and quantitative and qualitative fitness in the edge-specialist Dianthus balbisii. Composition and behaviour of the insects visiting flowers of D. balbisii strongly varied over the study gradient, influencing strength and patterns of plant biotic interactions (i.e. herbivory and pollination likelihood). Seed set comparison in free- and manually pollinated flowers suggested spatial variations in the extent of quantitative pollen limitation, which appeared more pronounced at the gradient extremes. Such variations were congruent to patterns of flower visit and plant biotic interactions. The analyses on seed and seedling viability evidenced that spatial variation in amount and type of pollinators, and frequency of herbivory affected qualitative fitness of D. balbisii by influencing selfing and outcrossing rates. Our work emphasizes the role of plant biotic interactions as a fine-scale mediator of plant fitness in ecotones, highlighting that optimal plant reproduction can take place into a restricted interval of the ecological gradients occurring at forest edges. Reducing the habitat complexity typical of such transition contexts can threat edge-adapted plants. PMID:28775831

  7. Subcellular fractionation and localization studies reveal a direct interaction of the Fragile X Mental Retardation Protein (FMRP) with nucleolin

    NARCIS (Netherlands)

    Taha, M.S.; Nouri, K.; Milroy, L.G.; Moll, J.M.; Herrmann, C.; Brunsveld, L.; Piekorz, R.P.; Ahmadian, M.R.

    2014-01-01

    Fragile X mental Retardation Protein (FMRP) is a well-known regulator of local translation of its mRNA targets in neurons. However, despite its ubiquitous expression, the role of FMRP remains ill-defined in other cell types. In this study we investigated the subcellular distribution of FMRP and its

  8. Numerical simulations (2D) on the influence of pre-existing local structures and seismic source characteristics in earthquake-volcano interactions

    Science.gov (United States)

    Farías, Cristian; Galván, Boris; Miller, Stephen A.

    2017-09-01

    Earthquake triggering of hydrothermal and volcanic systems is ubiquitous, but the underlying processes driving these systems are not well-understood. We numerically investigate the influence of seismic wave interaction with volcanic systems simulated as a trapped, high-pressure fluid reservoir connected to a fluid-filled fault system in a 2-D poroelastic medium. Different orientations and earthquake magnitudes are studied to quantify dynamic and static stress, and pore pressure changes induced by a seismic event. Results show that although the response of the system is mainly dominated by characteristics of the radiated seismic waves, local structures can also play an important role on the system dynamics. The fluid reservoir affects the seismic wave front, distorts the static overpressure pattern induced by the earthquake, and concentrates the kinetic energy of the incoming wave on its boundaries. The static volumetric stress pattern inside the fault system is also affected by the local structures. Our results show that local faults play an important role in earthquake-volcanic systems dynamics by concentrating kinetic energy inside and acting as wave-guides that have a breakwater-like behavior. This generates sudden changes in pore pressure, volumetric expansion, and stress gradients. Local structures also influence the regional Coulomb yield function. Our results show that local structures affect the dynamics of volcanic and hydrothermal systems, and should be taken into account when investigating triggering of these systems from nearby or distant earthquakes.

  9. Interactions between the introduced Pacific oyster Crassostrea gigas and the indigenous blue mussel Mytilus edulis. Local-scale food competition

    NARCIS (Netherlands)

    Hans, I.W.

    2004-01-01

    The aim of this study was to determine if food competition between mussels and oysters occurs, and how mussel and oyster growth is affected by this interaction. This was done by relating mussel growth to oyster density relating oyster growth to oyster biomass and perform a field control, by

  10. Interactive effects of soil-dwelling ants, ant mounds and simulated grazing on local plant community composition

    NARCIS (Netherlands)

    Veen, G.F.; Olff, H.

    2011-01-01

    Interactions between aboveground vertebrate herbivores and subterranean yellow meadow ants (Lasius flavus) can drive plant community patterns in grassland ecosystems. Here, we study the relative importance of the presence of ants (L. flavus) and ant mounds under different simulated grazing regimes

  11. Exploring the multiplicity of soil-human interactions: organic carbon content, agro-forest landscapes and the Italian local communities.

    Science.gov (United States)

    Salvati, Luca; Barone, Pier Matteo; Ferrara, Carlotta

    2015-05-01

    Topsoil organic carbon (TOC) and soil organic carbon (SOC) are fundamental in the carbon cycle influencing soil functions and attributes. Many factors have effects on soil carbon content such as climate, parent material, land topography and the human action including agriculture, which sometimes caused a severe loss in soil carbon content. This has resulted in a significant differentiation in TOC or SOC at the continental scale due to the different territorial and socioeconomic conditions. The present study proposes an exploratory data analysis assessing the relationship between the spatial distribution of soil organic carbon and selected socioeconomic attributes at the local scale in Italy with the aim to provide differentiated responses for a more sustainable use of land. A strengths, weaknesses, opportunities and threats (SWOT) analysis contributed to understand the effectiveness of local communities responses for an adequate comprehension of the role of soil as carbon sink.

  12. LOCAL LINEAR ANALYSIS OF INTERACTION BETWEEN A PLANET AND VISCOUS DISK AND AN IMPLICATION ON TYPE I PLANETARY MIGRATION

    International Nuclear Information System (INIS)

    Muto, Takayuki; Inutsuka, Shu-ichiro

    2009-01-01

    We investigate the effects of viscosity on disk-planet interaction and discuss how type I migration of planets is modified. We have performed a linear calculation using shearing-sheet approximation and obtained the detailed, high-resolution density structure around the planet embedded in a viscous disk with a wide range of viscous coefficients. We use a time-dependent formalism that is useful in investigating the effects of various physical processes on disk-planet interaction. We find that the density structure in the vicinity of the planet is modified and the main contribution to the torque comes from this region, in contrast to the inviscid case. Although it is not possible to derive total torque acting on the planet within the shearing-sheet approximation, the one-sided torque can be very different from the inviscid case, depending on the Reynolds number. This effect has been neglected so far but our results indicate that the interaction between a viscous disk and a planet can be qualitatively different from an inviscid case and the details of the density structure in the vicinity of the planet are critically important.

  13. Generation of Earthquake Ground Motion Considering Local Site Effects and Soil-Structure Interaction Analysis of Ancient Structures

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jae Kwan; Lee, J. S.; Yang, T. S.; Cho, J. R.; R, H. [Korea Atomic Energy Research Institute, Taejon (Korea, Republic of)

    1997-09-01

    In order to establish a correct correlation between them, mechanical characteristics of the ancient structures need to be investigated. Since sedimentary basins are preferred dwelling sites in ancient times, it is necessary to perform SSI analysis to derive correct correlation between the damage and ground motion intensity. Contents of Project are as follows: (1) Generation of stochastic earthquake ground motion considering source mechanism and site effects. (2) Analysis of seismic response of sedimentary basin. (3) Soil-structure interaction analysis of ancient structures (4) Investigation of dynamic response characteristics of ancient structure considering soil-structure interaction effects. A procedure is presented for generation of stochastic earthquake ground motion considering source mechanism and site effects. The simulation method proposed by Boore is used to generate the outcropping rock motion. The free field motion at the soil site is obtained by a convolution analysis. And for the study of wood structures, a nonlinear SDOF model is developed. The effects of soil-structure interaction on the behavior of the wood structures are found to be very minor. But the response can be significantly affected due to the intensity and frequency contents of the input motion. 13 refs., 6 tabs., 31 figs. (author)

  14. Angelman syndrome protein UBE3A interacts with primary microcephaly protein ASPM, localizes to centrosomes and regulates chromosome segregation.

    Directory of Open Access Journals (Sweden)

    Pooja Singhmar

    Full Text Available Many proteins associated with the phenotype microcephaly have been localized to the centrosome or linked to it functionally. All the seven autosomal recessive primary microcephaly (MCPH proteins localize at the centrosome. Microcephalic osteodysplastic primordial dwarfism type II protein PCNT and Seckel syndrome (also characterized by severe microcephaly protein ATR are also centrosomal proteins. All of the above findings show the importance of centrosomal proteins as the key players in neurogenesis and brain development. However, the exact mechanism as to how the loss-of-function of these proteins leads to microcephaly remains to be elucidated. To gain insight into the function of the most commonly mutated MCPH gene ASPM, we used the yeast two-hybrid technique to screen a human fetal brain cDNA library with an ASPM bait. The analysis identified Angelman syndrome gene product UBE3A as an ASPM interactor. Like ASPM, UBE3A also localizes to the centrosome. The identification of UBE3A as an ASPM interactor is not surprising as more than 80% of Angelman syndrome patients have microcephaly. However, unlike in MCPH, microcephaly is postnatal in Angelman syndrome patients. Our results show that UBE3A is a cell cycle regulated protein and its level peaks in mitosis. The shRNA knockdown of UBE3A in HEK293 cells led to many mitotic abnormalities including chromosome missegregation, abnormal cytokinesis and apoptosis. Thus our study links Angelman syndrome protein UBE3A to ASPM, centrosome and mitosis for the first time. We suggest that a defective chromosome segregation mechanism is responsible for the development of microcephaly in Angelman syndrome.

  15. Myosin heavy chain-like localizes at cell contact sites during Drosophila myoblast fusion and interacts in vitro with Rolling pebbles 7

    Energy Technology Data Exchange (ETDEWEB)

    Bonn, Bettina R.; Rudolf, Anja; Hornbruch-Freitag, Christina; Daum, Gabor; Kuckwa, Jessica; Kastl, Lena; Buttgereit, Detlev [Developmental Biology, Department of Biology, Philipps-Universität Marburg, Karl-von-Frisch-Strasse 8, 35037 Marburg (Germany); Renkawitz-Pohl, Renate, E-mail: renkawit@biologie.uni-marburg.de [Developmental Biology, Department of Biology, Philipps-Universität Marburg, Karl-von-Frisch-Strasse 8, 35037 Marburg (Germany)

    2013-02-15

    Besides representing the sarcomeric thick filaments, myosins are involved in many cellular transport and motility processes. Myosin heavy chains are grouped into 18 classes. Here we show that in Drosophila, the unconventional group XVIII myosin heavy chain-like (Mhcl) is transcribed in the mesoderm of embryos, most prominently in founder cells (FCs). An ectopically expressed GFP-tagged Mhcl localizes in the growing muscle at cell–cell contacts towards the attached fusion competent myoblast (FCM). We further show that Mhcl interacts in vitro with the essential fusion protein Rolling pebbles 7 (Rols7), which is part of a protein complex established at cell contact sites (Fusion-restricted Myogenic-Adhesive Structure or FuRMAS). Here, branched F-actin is likely needed to widen the fusion pore and to integrate the myoblast into the growing muscle. We show that the localization of Mhcl is dependent on the presence of Rols7, and we postulate that Mhcl acts at the FuRMAS as an actin motor protein. We further show that Mhcl deficient embryos develop a wild-type musculature. We thus propose that Mhcl functions redundantly to other myosin heavy chains in myoblasts. Lastly, we found that the protein is detectable adjacent to the sarcomeric Z-discs, suggesting an additional function in mature muscles. - Highlights: ► The class XVIII myosin encoding gene Mhcl is transcribed in the mesoderm. ► Mhcl localization at contact sites of fusing myoblasts depends on Rols7. ► Mhcl interacts in vitro with Rols7 which is essential for myogenesis. ► Functional redundancy with other myosins is likely as mutants show no muscle defects. ► Mhcl localizes adjacent to Z-discs of sarcomeres and might support muscle integrity.

  16. Myosin heavy chain-like localizes at cell contact sites during Drosophila myoblast fusion and interacts in vitro with Rolling pebbles 7

    International Nuclear Information System (INIS)

    Bonn, Bettina R.; Rudolf, Anja; Hornbruch-Freitag, Christina; Daum, Gabor; Kuckwa, Jessica; Kastl, Lena; Buttgereit, Detlev; Renkawitz-Pohl, Renate

    2013-01-01

    Besides representing the sarcomeric thick filaments, myosins are involved in many cellular transport and motility processes. Myosin heavy chains are grouped into 18 classes. Here we show that in Drosophila, the unconventional group XVIII myosin heavy chain-like (Mhcl) is transcribed in the mesoderm of embryos, most prominently in founder cells (FCs). An ectopically expressed GFP-tagged Mhcl localizes in the growing muscle at cell–cell contacts towards the attached fusion competent myoblast (FCM). We further show that Mhcl interacts in vitro with the essential fusion protein Rolling pebbles 7 (Rols7), which is part of a protein complex established at cell contact sites (Fusion-restricted Myogenic-Adhesive Structure or FuRMAS). Here, branched F-actin is likely needed to widen the fusion pore and to integrate the myoblast into the growing muscle. We show that the localization of Mhcl is dependent on the presence of Rols7, and we postulate that Mhcl acts at the FuRMAS as an actin motor protein. We further show that Mhcl deficient embryos develop a wild-type musculature. We thus propose that Mhcl functions redundantly to other myosin heavy chains in myoblasts. Lastly, we found that the protein is detectable adjacent to the sarcomeric Z-discs, suggesting an additional function in mature muscles. - Highlights: ► The class XVIII myosin encoding gene Mhcl is transcribed in the mesoderm. ► Mhcl localization at contact sites of fusing myoblasts depends on Rols7. ► Mhcl interacts in vitro with Rols7 which is essential for myogenesis. ► Functional redundancy with other myosins is likely as mutants show no muscle defects. ► Mhcl localizes adjacent to Z-discs of sarcomeres and might support muscle integrity

  17. Interaction of Nickel and Manganese in Accumulation and Localization in Leaves of the Ni Hyperaccumulators Alyssum murale and Alyssum corsicum

    Energy Technology Data Exchange (ETDEWEB)

    Broadhurst, C.; Tappero, R; Maugel, T; Erbe, E; Sparks, D; Chaney, R

    2009-01-01

    The genus Alyssum contains >50 Ni hyperaccumulator species; many can achieve >2.5% Ni in dry leaf. In soils with normal Mn levels, Alyssum trichome bases were previously observed to accumulate Ni and Mn to high levels. Here we report concentration and localization patterns in A. murale and A. corsicum grown in soils with nonphytotoxic factorial additions of Ni and Mn salts. Four leaf type subsets based on size and age accumulated Ni and Mn similarly. The greatest Mn accumulation (10 times control) was observed in A. corsicum with 40 mmol Mn kg-1 and 40 mmol Ni kg-1 added to potting soil. Whole leaf Ni concentrations decreased as Mn increased. Synchrotron X-ray fluorescence mapping of whole fresh leaves showed localized in distinct high-concentration Mn spots associated with trichomes, Ni and Mn distributions were strongly spatially correlated. Standard X-ray fluorescence point analysis/mapping of cryofractured and freeze-dried samples found that Ni and Mn were co-located and strongly concentrated only in trichome bases and in cells adjacent to trichomes. Nickel concentration was also strongly spatially correlated with sulfur. Results indicate that maximum Ni phytoextraction by Alyssum may be reduced in soils with higher phytoavailable Mn, and suggest that Ni hyperaccumulation in Alyssum species may have developed from a Mn handling system.

  18. Conceptual aspects of fiscal interactions between local governments and federally-owned, high-level radioactive waste-isolation facilities

    International Nuclear Information System (INIS)

    Bjornstad, D.J.; Johnson, K.E.

    1981-01-01

    This paper examines a number of ways to transfer revenues between a federally-owned high level radioactive waste isolation facility (hereafter simply, facility) and local governments. Such payments could be used to lessen fiscal disincentives or to provide fiscal incentives for communities to host waste isolation facilities. Two facility characteristics which necessitate these actions are singled out for attention. First, because the facility is federally owned, it is not liable for state and local taxes and may be viewed by communities as a fiscal liability. Several types of payment plans to correct this deficiency are examined. The major conclusion is that while removal of disincentives or creation of incentives is possible, plans based on cost compensation that fail to consider opportunity costs cannot create incentives and are likely to create disincentives. Second, communities other than that in which the facility is sited may experience costs due to the siting and may, therefore, oppose it. These costs (which also accrue to the host community) arise due to the element of risk which the public generally associates with proximity to the transport and storage of radioactive materials. It is concluded that under certain circumstances compensatory payments are possible, but that measuring these costs will pose difficulty

  19. Dynamic localization and interaction with other Bacillus subtilis actin-like proteins are important for the function of MreB.

    Science.gov (United States)

    Defeu Soufo, Hervé Joël; Graumann, Peter L

    2006-12-01

    Bacterial actin-like proteins play a key role in cell morphology and in chromosome segregation. Many bacteria, like Bacillus subtilis, contain three genes encoding actin-like proteins, called mreB, mbl and mreBH in B. subtilis. We show that MreB and Mbl colocalize extensively within live cells, and that all three B. subtilis actin paralogues interact with each other underneath the cell membrane. A mutation in the phosphate 2 motif of MreB had a dominant negative effect on cell morphology and on chromosome segregation. Expression of this mutant allele of MreB interfered with the dynamic localization of Mbl. These experiments show that the interaction between MreB and Mbl has physiological significance. An mreB deletion strain can grow under special media conditions, however, depletion of Mbl in this mutant background abolished growth, indicating that actin paralogues can partially complement each other. The membrane protein MreC was found to interact with Mbl, but not with MreB, revealing a clear distinction between the function of the two paralogues. The phosphate 2 mutant MreB protein allowed for filament formation of mutant or wild-type MreB, but abolished the dynamic reorganization of the filaments. The latter mutation led to a strong reduction, but not complete loss, of function of MreB, both in terms of chromosome segregation and of cell morphology. Our work shows that that the dynamic localization of MreB is essential for the proper activity of the actin-like protein and that the interactions between MreB paralogues have important physiological significance.

  20. LMKB/MARF1 localizes to mRNA processing bodies, interacts with Ge-1, and regulates IFI44L gene expression.

    Directory of Open Access Journals (Sweden)

    Donald B Bloch

    Full Text Available The mRNA processing body (P-body is a cellular structure that regulates the stability of cytoplasmic mRNA. MARF1 is a murine oocyte RNA-binding protein that is associated with maintenance of mRNA homeostasis and genomic stability. In this study, autoantibodies were used to identify Limkain B (LMKB, the human orthologue of MARF1, as a P-body component. Indirect immunofluorescence demonstrated that Ge-1 (a central component of the mammalian core-decapping complex co-localized with LMKB in P-bodies. Two-hybrid and co-immunoprecipitation assays were used to demonstrate interaction between Ge-1 and LMKB. The C-terminal 120 amino acids of LMKB mediated interaction with Ge-1 and the N-terminal 1094 amino acids of Ge-1 were required for interaction with LMKB. LMKB is the first protein identified to date that interacts with this portion of Ge-1. LMKB was expressed in human B and T lymphocyte cell lines; depletion of LMKB increased expression of IFI44L, a gene that has been implicated in the cellular response to Type I interferons. The interaction between LMKB/MARF1, a protein that contains RNA-binding domains, and Ge-1, which interacts with core-decapping proteins, suggests that LMKB has a role in the regulation of mRNA stability. LMKB appears to have different functions in different cell types: maintenance of genomic stability in developing oocytes and possible dampening of the inflammatory response in B and T cells.

  1. Enhancing non-local correlations in the bipartite partitions of two qubit-system with non-mutual interaction

    Energy Technology Data Exchange (ETDEWEB)

    Mohamed, A.-B.A., E-mail: abdelbastm@yahoo.com [College of Sciences and Humanities, Prince Sattam Bin Abdulaziz University, Al-Aflaj (Saudi Arabia); Faculty of Science, Assiut University, Assiut (Egypt); Joshi, A., E-mail: mcbamji@gmail.com [Physics Department, Adelphi University Garden City, NY 11530 (United States); Department of Physics and Optical Engineering, RHIT, Terra Haute IN 47803 (United States); Hassan, S.S., E-mail: shoukryhassan@hotmail.com [Department of Mathematics, College of Science, University of Bahrain, P.O. Box 32038 (Bahrain)

    2016-03-15

    Several quantum-mechanical correlations, notably, quantum entanglement, measurement-induced nonlocality and Bell nonlocality are studied for a two qubit-system having no mutual interaction. Analytical expressions for the measures of these quantum-mechanical correlations of different bipartite partitions of the system are obtained, for initially two entangled qubits and the two photons are in their vacuum states. It is found that the qubits-fields interaction leads to the loss and gain of the initial quantum correlations. The lost initial quantum correlations transfer from the qubits to the cavity fields. It is found that the maximal violation of Bell’s inequality is occurring when the quantum correlations of both the logarithmic negativity and measurement-induced nonlocality reach particular values. The maximal violation of Bell’s inequality occurs only for certain bipartite partitions of the system. The frequency detuning leads to quick oscillations of the quantum correlations and inhibits their transfer from the qubits to the cavity modes. It is also found that the dynamical behavior of the quantum correlation clearly depends on the qubit distribution angle.

  2. PL-PatchSurfer: a novel molecular local surface-based method for exploring protein-ligand interactions.

    Science.gov (United States)

    Hu, Bingjie; Zhu, Xiaolei; Monroe, Lyman; Bures, Mark G; Kihara, Daisuke

    2014-08-27

    Structure-based computational methods have been widely used in exploring protein-ligand interactions, including predicting the binding ligands of a given protein based on their structural complementarity. Compared to other protein and ligand representations, the advantages of a surface representation include reduced sensitivity to subtle changes in the pocket and ligand conformation and fast search speed. Here we developed a novel method named PL-PatchSurfer (Protein-Ligand PatchSurfer). PL-PatchSurfer represents the protein binding pocket and the ligand molecular surface as a combination of segmented surface patches. Each patch is characterized by its geometrical shape and the electrostatic potential, which are represented using the 3D Zernike descriptor (3DZD). We first tested PL-PatchSurfer on binding ligand prediction and found it outperformed the pocket-similarity based ligand prediction program. We then optimized the search algorithm of PL-PatchSurfer using the PDBbind dataset. Finally, we explored the utility of applying PL-PatchSurfer to a larger and more diverse dataset and showed that PL-PatchSurfer was able to provide a high early enrichment for most of the targets. To the best of our knowledge, PL-PatchSurfer is the first surface patch-based method that treats ligand complementarity at protein binding sites. We believe that using a surface patch approach to better understand protein-ligand interactions has the potential to significantly enhance the design of new ligands for a wide array of drug-targets.

  3. Applications of electrical resistivity imaging for characterizing groundwater-surface water interactions from local to regional scales

    Science.gov (United States)

    Cardenas, M. B.; Befus, K. M.; Zamora, P. B.; Ong, J.; Zlotnik, V. A.; Cook, P. L.; Tait, D. R.; Erler, D.; Santos, I. R.; Siringan, F. P.

    2012-12-01

    Surface water (SW) and groundwater (GW) interact across multiple spatial and temporal scales and their interaction is important for ecological and biogeochemical functions. The mixing of GW and SW has been challenging to simultaneously map with sufficient detail and coverage. Fortunately, ambient differences in salinity of waters occupying geologic formations and sediment are an ideal target for electrical resistivity imaging (ERI). We present examples of the application of ERI for mapping GW discharge and for understanding GW-SW interactions at: (1) a large regulated river, (2) neighboring lakes with differing salinity, (3) fringing coral reefs and lagoons, (4) beaches, and (5) estuaries. In all these cases, the ER tomograms were critical for improving conceptual understanding of GW-SW interactions. At the Lower Colorado River in Austin, Texas (USA), time-lapse ERI was conducted across a 12-hour dam-release cycle when the river stage varied by 0.7 m. Using temporal variability in electrical resistivity (ER) signatures, we identified a shallow well-flushed hyporheic zone, a transition zone where SW and GW mix, and a stable deep zone hosting only GW. In alkaline lakes in the Nebraska Sand Hills (Nebraska, USA), ER surveys using boat-towed cables allowed for mapping the 3D electrical structure underneath the lake. The tomograms were used to distinguish flow-through lakes, which have decreasing subsurface ER from GW inflow to outflow area, from pure GW discharge lakes, which have uniformly stratified increasing-with-depth ER profiles. Moreover, GW plumes in both discharge and recharge zones were clearly outlined underneath the lake. More than 30 km of ER profiles collected via boat-towed surveys over a fringing coral reef in the Philippines identified areas of high ER within the reef that coincide with resistive zones in the seawater. Analysis of 222Rn of bottom waters and vertical conductivity-temperature-depth measurements show the persistence of fresh GW input into

  4. Varying Herbivore Population Structure Correlates with Lack of Local Adaptation in a Geographic Variable Plant-Herbivore Interaction

    Science.gov (United States)

    Cogni, Rodrigo; Trigo, José R.; Futuyma, Douglas J.

    2011-01-01

    Local adaptation of parasites to their hosts due to coevolution is a central prediction of many theories in evolutionary biology. However, empirical studies looking for parasite local adaptation show great variation in outcomes, and the reasons for such variation are largely unknown. In a previous study, we showed adaptive differentiation in the arctiid moth Utetheisa ornatrix to its host plant, the pyrrolizidine alkaloid-bearing legume Crotalaria pallida, at the continental scale, but found no differentiation at the regional scale. In the present study, we sampled the same sites to investigate factors that may contribute to the lack of differentiation at the regional scale. We performed field observations that show that specialist and non-specialist polyphagous herbivore incidence varies among populations at both scales. With a series of common-garden experiments we show that some plant traits that may affect herbivory (pyrrolizidine alkaloids and extrafloral nectaries) vary at the regional scale, while other traits (trichomes and nitrogen content) just vary at the continental scale. These results, combined with our previous evidence for plant population differentiation based on larval performance on fresh fruits, suggest that U. ornatrix is subjected to divergent selection even at the regional scale. Finally, with a microsatellite study we investigated population structure of U. ornatrix. We found that population structure is not stable over time: we found population differentiation at the regional scale in the first year of sampling, but not in the second year. Unstable population structure of the herbivore is the most likely cause of the lack of regional adaptation. PMID:22220208

  5. Varying herbivore population structure correlates with lack of local adaptation in a geographic variable plant-herbivore interaction.

    Directory of Open Access Journals (Sweden)

    Rodrigo Cogni

    Full Text Available Local adaptation of parasites to their hosts due to coevolution is a central prediction of many theories in evolutionary biology. However, empirical studies looking for parasite local adaptation show great variation in outcomes, and the reasons for such variation are largely unknown. In a previous study, we showed adaptive differentiation in the arctiid moth Utetheisa ornatrix to its host plant, the pyrrolizidine alkaloid-bearing legume Crotalaria pallida, at the continental scale, but found no differentiation at the regional scale. In the present study, we sampled the same sites to investigate factors that may contribute to the lack of differentiation at the regional scale. We performed field observations that show that specialist and non-specialist polyphagous herbivore incidence varies among populations at both scales. With a series of common-garden experiments we show that some plant traits that may affect herbivory (pyrrolizidine alkaloids and extrafloral nectaries vary at the regional scale, while other traits (trichomes and nitrogen content just vary at the continental scale. These results, combined with our previous evidence for plant population differentiation based on larval performance on fresh fruits, suggest that U. ornatrix is subjected to divergent selection even at the regional scale. Finally, with a microsatellite study we investigated population structure of U. ornatrix. We found that population structure is not stable over time: we found population differentiation at the regional scale in the first year of sampling, but not in the second year. Unstable population structure of the herbivore is the most likely cause of the lack of regional adaptation.

  6. Localization of aPKC lambda/iota and its interacting protein, Lgl2, is significantly associated with lung adenocarcinoma progression.

    Science.gov (United States)

    Imamura, Naoko; Horikoshi, Yosuke; Matsuzaki, Tomohiko; Toriumi, Kentaro; Kitatani, Kanae; Ogura, Go; Masuda, Ryota; Nakamura, Naoya; Takekoshi, Susumu; Iwazaki, Masayuki

    2013-12-20

    Atypical protein kinase C lambda/iota (aPKC λ/ι) is expressed in several human cancers; however, the correlation between aPKC λ/ι localization and cancer progression in human lung adenocarcinoma (LAC) remains to be clarified. We found that patients with a high level of aPKC λ/ι expression in LAC had significantly shorter overall survival than those with a low level of aPKC λ/ι expression. In addition, localization of aPKC λ/ι in the apical membrane or at the cell-cell contact was associated with both lymphatic invasion and metastasis. The intercellular adhesion molecule, E-cadherin, was decreased in LACs with highly expressed aPKC λ/ι at the invasion site of tumor cells. This result suggested that the expression levels of aPKC λ/ι and E-cadherin reflect the progression of LAC. On double-immunohistochemical analysis, aPKC λ/ι and Lgl2, a protein that interacts with aPKC λ/ι, were co-localized within LACs. Furthermore, we found that Lgl2 bound the aPKC λ/ι-Par6 complex in tumor tissue by immune-cosedimentation analysis. Apical membrane localization of Lgl2 was correlated with lymphatic invasion and lymph node metastasis. These results thus indicate that aPKC λ/ι expression is altered upon the progression of LAC. This is also the first evidence to show aPKC λ/ι overexpression in LAC and demonstrates that aPKC λ/ι localization at the apical membrane or cell-cell contact is associated with lymphatic invasion and metastasis of the tumor.

  7. The Epstein-Barr virus BFRF1 and BFLF2 proteins interact and coexpression alters their cellular localization

    International Nuclear Information System (INIS)

    Lake, Cathleen M.; Hutt-Fletcher, Lindsey M.

    2004-01-01

    The BFRF1 protein of Epstein-Barr virus (EBV) is a recently identified membrane protein that is the homolog of the alphaherpesvirus UL34 gene product. We report here that a yeast two-hybrid screen identified the BFLF2 gene product, a homolog of alphaherpesvirus UL31, as a protein that interacts with BFRF1. Expression of BFLF2 in mammalian cells revealed a protein of approximately 28 kDa that associated with BFRF1 in a noncovalently linked complex. When expressed alone, the BFRF1 protein was found in the cytoplasm and perinuclear region. BFLF2 was found diffusely in the nucleus in the absence of BFRF1, but coexpression of BFRF1 and BFLF2 resulted in colocalization of the two proteins at the nuclear rim. These data recapitulate the behavior of the alphaherpesvirus homologs of BFRF1 and BFLF2 and suggest that functional as well as structural and positional homology may be conserved

  8. Precise Placement of Metallic Nanowires on a Substrate by Localized Electric Fields and Inter-Nanowire Electrostatic Interaction

    Directory of Open Access Journals (Sweden)

    U Hyeok Choi

    2017-10-01

    Full Text Available Placing nanowires at the predetermined locations on a substrate represents one of the significant hurdles to be tackled for realization of heterogeneous nanowire systems. Here, we demonstrate spatially-controlled assembly of a single nanowire at the photolithographically recessed region at the electrode gap with high integration yield (~90%. Two popular routes, such as protruding electrode tips and recessed wells, for spatially-controlled nanowire alignment, are compared to investigate long-range dielectrophoretic nanowire attraction and short-range nanowire-nanowire electrostatic interaction for determining the final alignment of attracted nanowires. Furthermore, the post-assembly process has been developed and tested to make a robust electrical contact to the assembled nanowires, which removes any misaligned ones and connects the nanowires to the underlying electrodes of circuit.

  9. Quasicontinuum analysis of dislocation-coherent twin boundary interaction to provide local rules to discrete dislocation dynamics

    Science.gov (United States)

    Tran, H.-S.; Tummala, H.; Duchene, L.; Pardoen, T.; Fivel, M.; Habraken, A. M.

    2017-10-01

    The interaction of a pure screw dislocation with a Coherent Twin Boundary Σ3 in copper was studied using the Quasicontinuum method. Coherent Twin Boundary behaves as a strong barrier to dislocation glide and prohibits slip transmission across the boundary. Dislocation pileup modifies the stress field at its intersection with the Grain Boundary (GB). A methodology to estimate the strength of the barrier for a dislocation to slip across CTB is proposed. A screw dislocation approaching the boundary from one side either propagates into the adjacent twin grain by cutting through the twin boundary or is stopped and increases the dislocation pileup amplitude at the GB. Quantitative estimation of the critical stress for transmission was performed using the virial stress computed by Quasicontinuum method. The transmission mechanism and critical stress are in line with the literature. Such information can be used as input for dislocation dynamic simulations for a better modeling of grain boundaries.

  10. Analysis of two way fluid structure interaction and local material properties of brazed joints for estimation of mechanical integrity

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Seok Hoon; Park, Sang Hu; Son, Chang Min; Ha, Man Young; Min, June Kee; Jeong, Ho Sung [Pusan Nat' l Univ., Busan (Korea, Republic of); Cho, Jongrae [Korea Maritime Univ., Busan (Korea, Republic of); Kim, Hyun Jun [Donghwa Entec Co., Ltd., Busan (Korea, Republic of)

    2013-01-15

    Recent years have witnessed a strong need for eco friendly and energy efficient systems owing to global environmental problems. A heat exchanger is a well known mechanical rig that has long been used in many energy systems. The use of a heat exchanger in an airplane engine has been attempted. In this case, the heat exchanger should be redesigned to be compact, lightweight, and highly reliable, and the issue of mechanical integrity gains importance. Therefore, in this study, we proposed a method for evaluating the mechanical integrity of a tube type heat exchanger. A U shaped single tube was used as an example, and its behavior and stress distribution were studied using fluid structure interaction (FSI) analysis.

  11. PL-PatchSurfer: A Novel Molecular Local Surface-Based Method for Exploring Protein-Ligand Interactions

    Directory of Open Access Journals (Sweden)

    Bingjie Hu

    2014-08-01

    Full Text Available Structure-based computational methods have been widely used in exploring protein-ligand interactions, including predicting the binding ligands of a given protein based on their structural complementarity. Compared to other protein and ligand representations, the advantages of a surface representation include reduced sensitivity to subtle changes in the pocket and ligand conformation and fast search speed. Here we developed a novel method named PL-PatchSurfer (Protein-Ligand PatchSurfer. PL-PatchSurfer represents the protein binding pocket and the ligand molecular surface as a combination of segmented surface patches. Each patch is characterized by its geometrical shape and the electrostatic potential, which are represented using the 3D Zernike descriptor (3DZD. We first tested PL-PatchSurfer on binding ligand prediction and found it outperformed the pocket-similarity based ligand prediction program. We then optimized the search algorithm of PL-PatchSurfer using the PDBbind dataset. Finally, we explored the utility of applying PL-PatchSurfer to a larger and more diverse dataset and showed that PL-PatchSurfer was able to provide a high early enrichment for most of the targets. To the best of our knowledge, PL-PatchSurfer is the first surface patch-based method that treats ligand complementarity at protein binding sites. We believe that using a surface patch approach to better understand protein-ligand interactions has the potential to significantly enhance the design of new ligands for a wide array of drug-targets.

  12. Useful lower limits to polarization contributions to intermolecular interactions using a minimal basis of localized orthogonal orbitals: theory and analysis of the water dimer.

    Science.gov (United States)

    Azar, R Julian; Horn, Paul Richard; Sundstrom, Eric Jon; Head-Gordon, Martin

    2013-02-28

    The problem of describing the energy-lowering associated with polarization of interacting molecules is considered in the overlapping regime for self-consistent field wavefunctions. The existing approach of solving for absolutely localized molecular orbital (ALMO) coefficients that are block-diagonal in the fragments is shown based on formal grounds and practical calculations to often overestimate the strength of polarization effects. A new approach using a minimal basis of polarized orthogonal local MOs (polMOs) is developed as an alternative. The polMO basis is minimal in the sense that one polarization function is provided for each unpolarized orbital that is occupied; such an approach is exact in second-order perturbation theory. Based on formal grounds and practical calculations, the polMO approach is shown to underestimate the strength of polarization effects. In contrast to the ALMO method, however, the polMO approach yields results that are very stable to improvements in the underlying AO basis expansion. Combining the ALMO and polMO approaches allows an estimate of the range of energy-lowering due to polarization. Extensive numerical calculations on the water dimer using a large range of basis sets with Hartree-Fock theory and a variety of different density functionals illustrate the key considerations. Results are also presented for the polarization-dominated Na(+)CH4 complex. Implications for energy decomposition analysis of intermolecular interactions are discussed.

  13. Drifts and Environmental Disturbances in Atomic Clock Subsystems: Quantifying Local Oscillator, Control Loop, and Ion Resonance Interactions.

    Science.gov (United States)

    Enzer, Daphna G; Diener, William A; Murphy, David W; Rao, Shanti R; Tjoelker, Robert L

    2017-03-01

    Linear ion trap frequency standards are among the most stable continuously operating frequency references and clocks. Depending on the application, they have been operated with a variety of local oscillators (LOs), including quartz ultrastable oscillators, hydrogen-masers, and cryogenic sapphire oscillators. The short-, intermediate-, and long-term stability of the frequency output is a complicated function of the fundamental performances, the time dependence of environmental disturbances, the atomic interrogation algorithm, the implemented control loop, and the environmental sensitivity of the LO and the atomic system components. For applications that require moving these references out of controlled lab spaces and into less stable environments, such as fieldwork or spaceflight, a deeper understanding is needed of how disturbances at different timescales impact the various subsystems of the clock and ultimately the output stability. In this paper, we analyze which perturbations have an impact and to what degree. We also report on a computational model of a control loop, which keeps the microwave source locked to the ion resonance. This model is shown to agree with laboratory measurements of how well the feedback removes various disturbances and also with a useful analytic approach we developed for predicting these impacts.

  14. Using the Relevance Vector Machine Model Combined with Local Phase Quantization to Predict Protein-Protein Interactions from Protein Sequences

    Directory of Open Access Journals (Sweden)

    Ji-Yong An

    2016-01-01

    Full Text Available We propose a novel computational method known as RVM-LPQ that combines the Relevance Vector Machine (RVM model and Local Phase Quantization (LPQ to predict PPIs from protein sequences. The main improvements are the results of representing protein sequences using the LPQ feature representation on a Position Specific Scoring Matrix (PSSM, reducing the influence of noise using a Principal Component Analysis (PCA, and using a Relevance Vector Machine (RVM based classifier. We perform 5-fold cross-validation experiments on Yeast and Human datasets, and we achieve very high accuracies of 92.65% and 97.62%, respectively, which is significantly better than previous works. To further evaluate the proposed method, we compare it with the state-of-the-art support vector machine (SVM classifier on the Yeast dataset. The experimental results demonstrate that our RVM-LPQ method is obviously better than the SVM-based method. The promising experimental results show the efficiency and simplicity of the proposed method, which can be an automatic decision support tool for future proteomics research.

  15. ‘Man-eaters’ in the Media: Representation of Human-leopard Interactions in India Across Local, National, and International Media

    Directory of Open Access Journals (Sweden)

    Crystal A Crown

    2017-01-01

    Full Text Available Interactions between humans and wildlife are frequent in India, requiring stakeholders to devise mitigation strategies that benefit both humans and wildlife. Success of such initiatives can be impacted by stakeholders' perceptions of species and related issues, which may be unduly influenced by the media. This paper explores media representation of Human-Leopard Interactions (HLI in India, focusing on detecting agenda-setting and framing in articles, and whether these differ with the level of association with HLI. To accomplish this, we coded articles (n=291 from three media-distribution levels with increasing detachment to HLI events: local news, Indian national news, and international news, and compared the types of agenda-setting and framing found across the three. Overall, international media had the most negative portrayal of leopards and HLI, while national had the most balanced. Local and international media included 'man-eater' framing in the majority of their stories; whereas stories of leopards as victims were most prominent in local news, and victim framing was most frequent in national. These results suggest that agenda-setting and framing may vary with association with HLI. Despite differences between sources, our findings suggest that all media distributions focused primarily on stories of leopards causing trouble (e.g., attacks and incursions, or in ways viewed as troublesome (e.g. incursions with few stories of leopards as victims or informational pieces. The largely negative depiction, and differences in representation between geographic locations, could hinder mitigation strategies and policy through presenting stakeholders with incomplete information.

  16. Non-local correlations via Wigner-Yanase skew information in two SC-qubit having mutual interaction under phase decoherence

    Science.gov (United States)

    Mohamed, Abdel-Baset A.

    2017-10-01

    An analytical solution of the master equation that describes a superconducting cavity containing two coupled superconducting charge qubits is obtained. Quantum-mechanical correlations based on Wigner-Yanase skew information, as local quantum uncertainty and uncertainty-induced quantum non-locality, are compared to the concurrence under the effects of the phase decoherence. Local quantum uncertainty exhibits sudden changes during its time evolution and revival process. Sudden death and sudden birth occur only for entanglement, depending on the initial state of the two coupled charge qubits, while the correlations of skew information does not vanish. The quantum correlations of skew information are found to be sensitive to the dephasing rate, the photons number in the cavity, the interaction strength between the two qubits, and the qubit distribution angle of the initial state. With a proper initial state, the stationary correlation of the skew information has a non-zero stationary value for a long time interval under the phase decoherence, that it may be useful in quantum information and computation processes.

  17. Characterization of the genome of a phylogenetically distinct tospovirus and its interactions with the local lesion-induced host Chenopodium quinoa by whole-transcriptome analyses.

    Science.gov (United States)

    Chou, Wan-Chen; Lin, Shih-Shun; Yeh, Shyi-Dong; Li, Siang-Ling; Peng, Ying-Che; Fan, Ya-Hsu; Chen, Tsung-Chi

    2017-01-01

    Chenopodium quinoa is a natural local lesion host of numerous plant viruses, including tospoviruses (family Bunyaviridae). Groundnut chlorotic fan-spot tospovirus (GCFSV) has been shown to consistently induce local lesions on the leaves of C. quinoa 4 days post-inoculation (dpi). To reveal the whole genome of GCFSV and its interactions with C. quinoa, RNA-seq was performed to determine the transcriptome profiles of C. quinoa leaves. The high-throughput reads from infected C. quinoa leaves were used to identify the whole genome sequence of GCFSV and its single nucleotide polymorphisms. Our results indicated that GCFSV is a phylogenetically distinct tospovirus. Moreover, 27,170 coding and 29,563 non-coding sequences of C. quinoa were identified through de novo assembly, mixing reads from mock and infected samples. Several key genes involved in the modulation of hypersensitive response (HR) were identified. The expression levels of 4,893 deduced complete genes annotated using the Arabidopsis genome indicated that several HR-related orthologues of pathogenesis-related proteins, transcription factors, mitogen-activated protein kinases, and defense proteins were significantly expressed in leaves that formed local lesions. Here, we also provide new insights into the replication progression of a tospovirus and the molecular regulation of the C. quinoa response to virus infection.

  18. ARP2/3 localization in Arabidopsis leaf pavement cells: a diversity of intracellular pools and cytoskeletal interactions.

    Science.gov (United States)

    Zhang, Chunhua; Mallery, Eileen L; Szymanski, Daniel B

    2013-01-01

    In plant cells the actin cytoskeleton adopts many configurations, but is best understood as an unstable, interconnected track that rearranges to define the patterns of long distance transport of organelles during growth. Actin filaments do not form spontaneously; instead filament nucleators, such as the evolutionarily conserved actin-related protein (ARP) 2/3 complex, can efficiently generate new actin filament networks when in a fully activated state. A growing number of genetic experiments have shown that ARP2/3 is necessary for morphogenesis in processes that range from tip growth during root nodule formation to the diffuse polarized growth of leaf trichomes and pavement cells. Although progress has been rapid in the identification of proteins that function in series to positively regulate ARP2/3, less has been learned about the actual function of ARP2/3 in cells. In this paper, we analyze the localization of ARP2/3 in Arabidopsis leaf pavement cells. We detect a pool of ARP2/3 in the nucleus, and also find that ARP2/3 is efficiently and specifically clustered on multiple organelle surfaces and associates with both the actin filament and microtubule cytoskeletons. Our mutant analyses and ARP2/3 and actin double labeling experiments indicate that the clustering of ARP2/3 on organelle surfaces and an association with actin bundles does not necessarily reflect an active pool of ARP2/3, and instead most of the complex appears to exist as a latent organelle-associated pool.

  19. Highly localized interactions between sensory neurons and sprouting sympathetic fibers observed in a transgenic tyrosine hydroxylase reporter mouse

    Directory of Open Access Journals (Sweden)

    Zhang Jun-Ming

    2011-07-01

    Full Text Available Abstract Background Sprouting of sympathetic fibers into sensory ganglia occurs in many preclinical pain models, providing a possible anatomical substrate for sympathetically enhanced pain. However, the functional consequences of this sprouting have been controversial. We used a transgenic mouse in which sympathetic fibers expressed green fluorescent protein, observable in live tissue. Medium and large diameter lumbar sensory neurons with and without nearby sympathetic fibers were recorded in whole ganglion preparations using microelectrodes. Results After spinal nerve ligation, sympathetic sprouting was extensive by 3 days. Abnormal spontaneous activity increased to 15% and rheobase was reduced. Spontaneously active cells had Aαβ conduction velocities but were clustered near the medium/large cell boundary. Neurons with sympathetic basket formations had a dramatically higher incidence of spontaneous activity (71% and had lower rheobase than cells with no sympathetic fibers nearby. Cells with lower density nearby fibers had intermediate phenotypes. Immunohistochemistry of sectioned ganglia showed that cells surrounded by sympathetic fibers were enriched in nociceptive markers TrkA, substance P, or CGRP. Spontaneous activity began before sympathetic sprouting was observed, but blocking sympathetic sprouting on day 3 by cutting the dorsal ramus in addition to the ventral ramus of the spinal nerve greatly reduced abnormal spontaneous activity. Conclusions The data suggest that early sympathetic sprouting into the sensory ganglia may have highly localized, excitatory effects. Quantitatively, neurons with sympathetic basket formations may account for more than half of the observed spontaneous activity, despite being relatively rare. Spontaneous activity in sensory neurons and sympathetic sprouting may be mutually re-enforcing.

  20. Fermi LAT Observation of Diffuse Gamma-Rays Produced through Interactions Between Local Interstellar Matter and High Energy Cosmic Rays

    Energy Technology Data Exchange (ETDEWEB)

    Abdo, A.A.; /Naval Research Lab, Wash., D.C. /Federal City Coll.; Ackermann, M.; /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Ajello, M.; /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Atwood, W.B.; /UC, Santa Cruz; Axelsson, M.; /Stockholm U. /Stockholm U., OKC; Baldini, L.; /INFN, Pisa; Ballet, J.; /DAPNIA, Saclay; Barbiellini, G.; /INFN, Trieste /Trieste U.; Bastieri, D.; /INFN, Padua /Padua U.; Baughman, B.M.; /Ohio State U.; Bechtol, K.; /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Bellazzini, R.; /INFN, Pisa; Berenji, B.; /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Bloom, E.D.; /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Bonamente, E.; /INFN, Perugia /Perugia U.; Borgland, A.W.; /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Bregeon, J.; /INFN, Pisa; Brez, A.; /INFN, Pisa; Brigida, M.; /Bari U. /INFN, Bari; Bruel, P.; /Ecole Polytechnique; Burnett, T.H.; /Washington U., Seattle /Bari U. /INFN, Bari /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /IASF, Milan /Milan Polytechnic /Royal Inst. Tech., Stockholm /Stockholm U., OKC /DAPNIA, Saclay /INFN, Perugia /Perugia U. /NASA, Goddard /Naval Research Lab, Wash., D.C. /George Mason U. /NASA, Goddard /INFN, Perugia /Perugia U. /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /Montpellier U. /Stockholm U. /Stockholm U., OKC /Royal Inst. Tech., Stockholm /ASDC, Frascati /Naval Research Lab, Wash., D.C. /INFN, Trieste /Bari U. /INFN, Bari /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /CENBG, Gradignan /CENBG, Gradignan /Montpellier U. /Bari U. /INFN, Bari /Ecole Polytechnique /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /INFN, Trieste /Hiroshima U. /Stanford U., HEPL /KIPAC, Menlo Park /Stanford U., Phys. Dept. /Bari U. /INFN, Bari /INFN, Bari; /more authors..

    2012-03-30

    Observations by the Large Area Telescope (LAT) on the Fermi mission of diffuse {gamma}-rays in a mid-latitude region in the third quadrant (Galactic longitude l from 200{sup o} to 260{sup o} and latitude |b| from 22{sup o} to 60{sup o}) are reported. The region contains no known large molecular cloud and most of the atomic hydrogen is within 1 kpc of the solar system. The contributions of {gamma}-ray point sources and inverse Compton scattering are estimated and subtracted. The residual {gamma}-ray intensity exhibits a linear correlation with the atomic gas column density in energy from 100 MeV to 10 GeV. The measured integrated {gamma}-ray emissivity is (1.63 {+-} 0.05) x 10{sup -26} photons s{sup -1}sr{sup -1} H-atom{sup -1} and (0.66 {+-} 0.02) x 10{sup -26} photons s{sup -1}sr{sup -1} H-atom{sup -1} above 100 MeV and above 300 MeV, respectively, with an additional systematic error of {approx}10%. The differential emissivity from 100 MeV to 10 GeV agrees with calculations based on cosmic ray spectra consistent with those directly measured, at the 10% level. The results obtained indicate that cosmic ray nuclei spectra within 1 kpc from the solar system in regions studied are close to the local interstellar spectra inferred from direct measurements at the Earth within {approx}10%.

  1. Interaction of HSP20 with a viral RdRp changes its sub-cellular localization and distribution pattern in plants.

    Science.gov (United States)

    Li, Jing; Xiang, Cong-Ying; Yang, Jian; Chen, Jian-Ping; Zhang, Heng-Mu

    2015-09-11

    Small heat shock proteins (sHSPs) perform a fundamental role in protecting cells against a wide array of stresses but their biological function during viral infection remains unknown. Rice stripe virus (RSV) causes a severe disease of rice in Eastern Asia. OsHSP20 and its homologue (NbHSP20) were used as baits in yeast two-hybrid (YTH) assays to screen an RSV cDNA library and were found to interact with the viral RNA-dependent RNA polymerase (RdRp) of RSV. Interactions were confirmed by pull-down and BiFC assays. Further analysis showed that the N-terminus (residues 1-296) of the RdRp was crucial for the interaction between the HSP20s and viral RdRp and responsible for the alteration of the sub-cellular localization and distribution pattern of HSP20s in protoplasts of rice and epidermal cells of Nicotiana benthamiana. This is the first report that a plant virus or a viral protein alters the expression pattern or sub-cellular distribution of sHSPs.

  2. Local equilibrium

    Energy Technology Data Exchange (ETDEWEB)

    Anon.

    1984-12-15

    From 3-6 September the First International Workshop on Local Equilibrium in Strong Interaction Physics took place in Bad-Honnef at the Physics Centre of the German Physical Society. A number of talks covered the experimental and theoretical investigation of the 'hotspots' effect, both in high energy particle physics and in intermediate energy nuclear physics.

  3. Ageing, exposure to pollution, and interactions between climate change and local seasons as oxidant conditions predicting incident hematologic malignancy at KINSHASA University clinics, Democratic Republic of CONGO (DRC).

    Science.gov (United States)

    Nkanga, Mireille Solange Nganga; Longo-Mbenza, Benjamin; Adeniyi, Oladele Vincent; Ngwidiwo, Jacques Bikaula; Katawandja, Antoine Lufimbo; Kazadi, Paul Roger Beia; Nzonzila, Alain Nganga

    2017-08-23

    The global burden of hematologic malignancy (HM) is rapidly rising with aging, exposure to polluted environments, and global and local climate variability all being well-established conditions of oxidative stress. However, there is currently no information on the extent and predictors of HM at Kinshasa University Clinics (KUC), DR Congo (DRC). This study evaluated the impact of bio-clinical factors, exposure to polluted environments, and interactions between global climate changes (EL Nino and La Nina) and local climate (dry and rainy seasons) on the incidence of HM. This hospital-based prospective cohort study was conducted at Kinshasa University Clinics in DR Congo. A total of 105 black African adult patients with anaemia between 2009 and 2016 were included. HM was confirmed by morphological typing according to the French-American-British (FAB) Classification System. Gender, age, exposure to traffic pollution and garages/stations, global climate variability (El Nino and La Nina), and local climate (dry and rainy seasons) were potential independent variables to predict incident HM using Cox regression analysis and Kaplan Meier curves. Out of the total 105 patients, 63 experienced incident HM, with an incidence rate of 60%. After adjusting for gender, HIV/AIDS, and other bio-clinical factors, the most significant independent predictors of HM were age ≥ 55 years (HR = 2.4; 95% CI 1.4-4.3; P = 0.003), exposure to pollution and garages or stations (HR = 4.9; 95% CI 2-12.1; P pollution, combined local dry season + La Nina and combined local dry season + El Nino were the most significant predictors of incident hematologic malignancy. These findings highlight the importance of aging, pollution, the dry season, El Nino and La Nina as related to global warming as determinants of hematologic malignancies among African patients from Kinshasa, DR Congo. Cancer registries in DRC and other African countries will provide more robust database for future researches on

  4. Reticulomics: Protein-Protein Interaction Studies with Two Plasmodesmata-Localized Reticulon Family Proteins Identify Binding Partners Enriched at Plasmodesmata, Endoplasmic Reticulum, and the Plasma Membrane.

    Science.gov (United States)

    Kriechbaumer, Verena; Botchway, Stanley W; Slade, Susan E; Knox, Kirsten; Frigerio, Lorenzo; Oparka, Karl; Hawes, Chris

    2015-11-01

    The endoplasmic reticulum (ER) is a ubiquitous organelle that plays roles in secretory protein production, folding, quality control, and lipid biosynthesis. The cortical ER in plants is pleomorphic and structured as a tubular network capable of morphing into flat cisternae, mainly at three-way junctions, and back to tubules. Plant reticulon family proteins (RTNLB) tubulate the ER by dimerization and oligomerization, creating localized ER membrane tensions that result in membrane curvature. Some RTNLB ER-shaping proteins are present in the plasmodesmata (PD) proteome and may contribute to the formation of the desmotubule, the axial ER-derived structure that traverses primary PD. Here, we investigate the binding partners of two PD-resident reticulon proteins, RTNLB3 and RTNLB6, that are located in primary PD at cytokinesis in tobacco (Nicotiana tabacum). Coimmunoprecipitation of green fluorescent protein-tagged RTNLB3 and RTNLB6 followed by mass spectrometry detected a high percentage of known PD-localized proteins as well as plasma membrane proteins with putative membrane-anchoring roles. Förster resonance energy transfer by fluorescence lifetime imaging microscopy assays revealed a highly significant interaction of the detected PD proteins with the bait RTNLB proteins. Our data suggest that RTNLB proteins, in addition to a role in ER modeling, may play important roles in linking the cortical ER to the plasma membrane. © 2015 American Society of Plant Biologists. All Rights Reserved.

  5. A self-interaction-free local hybrid functional: Accurate binding energies vis-à-vis accurate ionization potentials from Kohn-Sham eigenvalues

    International Nuclear Information System (INIS)

    Schmidt, Tobias; Kümmel, Stephan; Kraisler, Eli; Makmal, Adi; Kronik, Leeor

    2014-01-01

    We present and test a new approximation for the exchange-correlation (xc) energy of Kohn-Sham density functional theory. It combines exact exchange with a compatible non-local correlation functional. The functional is by construction free of one-electron self-interaction, respects constraints derived from uniform coordinate scaling, and has the correct asymptotic behavior of the xc energy density. It contains one parameter that is not determined ab initio. We investigate whether it is possible to construct a functional that yields accurate binding energies and affords other advantages, specifically Kohn-Sham eigenvalues that reliably reflect ionization potentials. Tests for a set of atoms and small molecules show that within our local-hybrid form accurate binding energies can be achieved by proper optimization of the free parameter in our functional, along with an improvement in dissociation energy curves and in Kohn-Sham eigenvalues. However, the correspondence of the latter to experimental ionization potentials is not yet satisfactory, and if we choose to optimize their prediction, a rather different value of the functional's parameter is obtained. We put this finding in a larger context by discussing similar observations for other functionals and possible directions for further functional development that our findings suggest

  6. Local unitary transformation method for large-scale two-component relativistic calculations. II. Extension to two-electron Coulomb interaction.

    Science.gov (United States)

    Seino, Junji; Nakai, Hiromi

    2012-10-14

    The local unitary transformation (LUT) scheme at the spin-free infinite-order Douglas-Kroll-Hess (IODKH) level [J. Seino and H. Nakai, J. Chem. Phys. 136, 244102 (2012)], which is based on the locality of relativistic effects, has been extended to a four-component Dirac-Coulomb Hamiltonian. In the previous study, the LUT scheme was applied only to a one-particle IODKH Hamiltonian with non-relativistic two-electron Coulomb interaction, termed IODKH/C. The current study extends the LUT scheme to a two-particle IODKH Hamiltonian as well as one-particle one, termed IODKH/IODKH, which has been a real bottleneck in numerical calculation. The LUT scheme with the IODKH/IODKH Hamiltonian was numerically assessed in the diatomic molecules HX and X(2) and hydrogen halide molecules, (HX)(n) (X = F, Cl, Br, and I). The total Hartree-Fock energies calculated by the LUT method agree well with conventional IODKH/IODKH results. The computational cost of the LUT method is reduced drastically compared with that of the conventional method. In addition, the LUT method achieves linear-scaling with respect to the system size and a small prefactor.

  7. Localization and interaction effects during superconductor-insulator transition of Bi2Sr2Ca1-xGdxCu2O8+d

    International Nuclear Information System (INIS)

    Jayaram, B.; Lanchester, P.C.; Weller, M.T.

    1991-01-01

    An extensive study has been made of the resistivity of superconducting and semiconducting samples of the Bi 2 Sr 2 Ca 1-x Gd x Cu 2 O 8+d system. The effect of changing the Gd concentration and the annealing conditions is found to be a gradual change in the normal-state resistivity measured at 280 K (ρ n ). With the increase in ρ n , T c is depressed. The form of the T c depression is found to be consistent with a theory of localization and interaction effects on the superconductivity. In the insulator regime, however, the resistivity is due to variable-range hopping (VRH), the dimensionality of which changes from two to three as the ρ n increases away from the superconductor-insulator boundary. The observation of the two-dimensional VRH behavior in juxtaposition with the superconductivity is in qualitative agreement with a theoretical model that considers the competition between superconductivity and localization in a disordered system. When ρ n >1 Ω cm, the resistivity variation is found to be dominated by multiphonon-assisted hopping

  8. Electronic structure of PrBa2Cu3O7: A local-spin-density approximation with on-site Coulomb interaction

    International Nuclear Information System (INIS)

    Biagini, M.; Calandra, C.; Ossicini, S.

    1995-01-01

    Electronic structure calculations based on the local-spin-density approximation (LSDA) fail to reproduce the antiferromagnetic ground state of PrBa 2 Cu 3 O 7 (PBCO). We have performed linear muffin-tin orbital--atomic sphere approximation calculations, based on the local-spin-density approximation with on-site Coulomb correlation applied to Cu(1) and Cu(2) 3d states. We have found that inclusion of the on-site Coulomb interaction modifies qualitatively the electronic structure of PBCO with respect to the LSDA results, and gives Cu spin moments in good agreement with the experimental values. The Cu(2) upper Hubbard band lies about 1 eV above the Fermi energy, indicating a Cu II oxidation state. On the other hand, the Cu(1) upper Hubbard band is located across the Fermi level, which implies an intermediate oxidation state for the Cu(1) ion, between Cu I and Cu II . The metallic character of the CuO chains is preserved, in agreement with optical reflectivity [K. Takenaka et al., Phys. Rev. B 46, 5833 (1992)] and positron annihilation experiments [L. Hoffmann et al., Phys. Rev. Lett. 71, 4047 (1993)]. These results support the view of an extrinsic origin of the insulating character of PrBa 2 Cu 3 O 7

  9. COROTATING INTERACTION REGION ASSOCIATED SUPRATHERMAL HELIUM ION ENHANCEMENTS AT 1 AU: EVIDENCE FOR LOCAL ACCELERATION AT THE COMPRESSION REGION TRAILING EDGE

    International Nuclear Information System (INIS)

    Ebert, R. W.; Dayeh, M. A.; Desai, M. I.; Mason, G. M.

    2012-01-01

    We examined the temporal profiles and peak intensities for 73 corotating interaction region (CIR)-associated suprathermal (∼0.1-8 MeV nucleon –1 ) helium (He) ion enhancements identified at STEREO-A, STEREO-B, and/or Advanced Composition Explorer between 2007 and 2010. We found that in most events the peak He intensity times were well organized by the CIR compression region trailing edge, regardless of whether or not a reverse shock was present. Out of these events, 19% had their 0.193 MeV nucleon –1 He intensities peak within 1 hr and 50% within 4.75 hr of the CIR trailing edge, the distribution having a 1σ value of 7.3 hr. Events with a 0.193 MeV nucleon –1 He intensity peak time within 1σ of the CIR trailing edge showed a positive correlation between the ∼0.1 and 0.8 MeV nucleon –1 He peak intensities and magnetic compression ratios in events both with and without a reverse shock. The peak intensities in all other events showed little to moderate correlation between these parameters. Our results provide evidence that some fraction of the CIR-associated –1 He intensity enhancements observed at 1 AU are locally driven. We suggest an extended source for the CIR-associated energetic particles observed at 1 AU where the –1 ions are accelerated locally at or near the CIR trailing edge, the intensities being proportional to the local compression ratio strength, while the >MeV particles are likely accelerated at CIR-driven shocks beyond Earth orbit.

  10. Land-atmosphere-ocean interactions in the southeastern Atlantic: interannual variability

    Science.gov (United States)

    Sun, Xiaoming; Vizy, Edward K.; Cook, Kerry H.

    2018-02-01

    Land-atmosphere-ocean interactions in the southeastern South Atlantic and their connections to interannual variability are examined using a regional climate model coupled with an intermediate-level ocean model. In austral summer, zonal displacements of the South Atlantic subtropical high (SASH) can induce variations of mixed-layer currents in the Benguela upwelling region through surface wind stress curl anomalies near the Namibian coast, and an eastward shifted SASH is related to the first Pacific-South American mode. When the SASH is meridionally displaced, mixed layer vertically-integrated Ekman transport anomalies are mainly a response to the change of alongshore surface wind stress. The latitudinal shift of the SASH tends to dampen the anomalous alongshore wind by modulating the land-sea thermal contrast, while opposed by oceanic diffusion. Although the position of the SASH is closely linked to the phase of El Niño-Southern Oscillation (ENSO) and the southern annular mode (SAM) in austral summer, an overall relationship between Benguela upwelling strength and ENSO or SAM is absent. During austral winter, variations of the mixed layer Ekman transport in the Benguela upwelling region are connected to the strength of the SASH through its impact on both coastal wind stress curl and alongshore surface wind stress. Compared with austral summer, low-level cloud cover change plays a more important role. Although wintertime sea surface temperature fluctuations in the equatorial Atlantic are strong and may act to influence variability over the northern Benguela area, the surface heat budget analysis suggests that local air-sea interactions dominate.

  11. Aircraft-based investigation of Dynamics-Aerosol-Chemistry-Cloud Interactions in Southern West Africa

    Science.gov (United States)

    Flamant, Cyrille

    2017-04-01

    The EU-funded project DACCIWA (Dynamics-Aerosol-Chemistry-Cloud Interactions in West Africa, http://www.dacciwa.eu) is investigating the relationship between weather, climate and air pollution in southern West Africa. The air over the coastal region of West Africa is a unique mixture of natural and anthropogenic gases, liquids and particles, emitted in an environment, in which multi-layer cloud decks frequently form. These exert a large influence on the local weather and climate, mainly due to their impact on radiation, the surface energy balance and thus the diurnal cycle of the atmospheric boundary layer. The main objective for the aircraft detachment was to build robust statistics of cloud properties in southern West Africa in different chemical landscapes to investigate the physical processes involved in their life cycle in such a complex chemical environment. As part of the DACCIWA field campaigns, three European aircraft (the German DLR Falcon 20, the French SAFIRE ATR 42 and the British BAS Twin Otter) conducted a total of 50 research flights across Ivory Coast, Ghana, Togo, and Benin from 27 June to 16 July 2016 for a total of 155 flight hours, including hours sponsored through 3 EUFAR projects. The aircraft were used in different ways based on their strengths, but all three had comparable instrumentation with the the capability to do gas-phase chemistry, aerosol and clouds, thereby generating a rich dataset of atmospheric conditions across the region. Eight types of flight objectives were conducted to achieve the goals of the DACCIWA: (i) Stratus clouds, (ii) Land-sea breeze clouds, (iii) Mid-level clouds, (iv) Biogenic emission, (v) City emissions, (vi) Flaring and ship emissions, (vii) Dust and biomass burning aerosols, and (viii) air-sea interactions. An overview of the DACCIWA aircraft campaign as well as first highlights from the airborne observations will be presented.

  12. Stripe rust and leaf rust resistance QTL mapping, epistatic interactions, and co-localization with stem rust resistance loci in spring wheat evaluated over three continents.

    Science.gov (United States)

    Singh, A; Knox, R E; DePauw, R M; Singh, A K; Cuthbert, R D; Campbell, H L; Shorter, S; Bhavani, S

    2014-11-01

    In wheat, advantageous gene-rich or pleiotropic regions for stripe, leaf, and stem rust and epistatic interactions between rust resistance loci should be accounted for in plant breeding strategies. Leaf rust (Puccinia triticina Eriks.) and stripe rust (Puccinia striiformis f. tritici Eriks) contribute to major production losses in many regions worldwide. The objectives of this research were to identify and study epistatic interactions of quantitative trait loci (QTL) for stripe and leaf rust resistance in a doubled haploid (DH) population derived from the cross of Canadian wheat cultivars, AC Cadillac and Carberry. The relationship of leaf and stripe rust resistance QTL that co-located with stem rust resistance QTL previously mapped in this population was also investigated. The Carberry/AC Cadillac population was genotyped with DArT(®) and simple sequence repeat markers. The parents and population were phenotyped for stripe rust severity and infection response in field rust nurseries in Kenya (Njoro), Canada (Swift Current), and New Zealand (Lincoln); and for leaf rust severity and infection response in field nurseries in Canada (Swift Current) and New Zealand (Lincoln). AC Cadillac was a source of stripe rust resistance QTL on chromosomes 2A, 2B, 3A, 3B, 5B, and 7B; and Carberry was a source of resistance on chromosomes 2B, 4B, and 7A. AC Cadillac contributed QTL for resistance to leaf rust on chromosome 2A and Carberry contributed QTL on chromosomes 2B and 4B. Stripe rust resistance QTL co-localized with previously reported stem rust resistance QTL on 2B, 3B, and 7B, while leaf rust resistance QTL co-localized with 4B stem rust resistance QTL. Several epistatic interactions were identified both for stripe and leaf rust resistance QTL. We have identified useful combinations of genetic loci with main and epistatic effects. Multiple disease resistance regions identified on chromosomes 2A, 2B, 3B, 4B, 5B, and 7B are prime candidates for further investigation and

  13. Seasonal variation of air-sea CO2 fluxes in the Terra Nova Bay of the Ross Sea, Antarctica, based on year-round pCO2 observations

    Science.gov (United States)

    Zappa, C. J.; Rhee, T. S.; Kwon, Y. S.; Choi, T.; Yang, E. J.; Kim, J.

    2017-12-01

    The polar oceans are rapidly changing in response to climate variability. In particular, augmented inflow of glacial melt water and shrinking sea-ice extent impacts the polar coastal oceans, which may in turn shift the biogeochemistry into an unprecedented paradigm not experienced previously. Nonetheless, most research in the polar oceans is limited to the summer season. Here, we present the first direct observations of ocean and atmospheric pCO2 measured near the coast of Terra Nova Bay in the Ross Sea, Antarctica, ongoing since February, 2015 at Jang Bogo Station. The coastal area is covered by landfast sea-ice from spring to fall while continually exposed to the atmosphere during summer season only. The pCO2 in seawater swung from 120 matm in February to 425 matm in early October. Although sea-ice still covers the coastal area, pCO2 already started decreasing after reaching the peak in October. In November, the pCO2 suddenly dropped as much as 100 matm in a week. This decrease of pCO2 continued until late February when the sea-ice concentration was minimal. With growing sea ice, the pCO2 increased logarithmically reaching the atmospheric concentration in June/July, depending on the year, and continued to increase until October. Daily mean air-sea CO2 flux in the coastal area widely varied from -70 mmol m-2 d-1 to 20 mmol m-2 d-1. Based on these observations of pCO2 in Terra Nova Bay, the annual uptake of CO2 is 8 g C m-2, estimated using the fraction of sea-ice concentration estimated from AMSR2 microwave emission imagery. Extrapolating to all polynyas surrounding Antarctica, we expect the annual uptake of 8 Tg C in the atmosphere. This is comparable to the amount of CO2 degassed into the atmosphere south of the Antarctic Polar Front (62°S).

  14. Immunohistochemical localization of integrin alpha V beta 3 and osteopontin suggests that they do not interact during embryo implantation in ruminants

    Directory of Open Access Journals (Sweden)

    MacLaren Leslie A

    2004-04-01

    Full Text Available Abstract Background It has been suggested that trophoblast attachment requires co-expression of integrin alpha V beta 3 and its ligand osteopontin at the fetal-maternal interface. Until now the expression patterns of integrin alpha V beta 3 and osteopontin in the pregnant bovine uterus were unknown. The objectives of this study were to localize integrin alpha V beta 3 and osteopontin in bovine and sheep endometrium during the periimplantation period and to compare the distribution patterns using antibodies that had not yet been tested in sheep. Methods Cell compartments within endometrial tissue sections were scored for immunohistochemical staining intensity and data were analyzed to determine the effects of day of pregnancy or cycle. Results In pregnant bovine endometrium, integrin alpha V beta 3 was detected in luminal epithelium, stroma, myometrium and smooth muscle. A strong band of immunoreactivity was observed in the subepithelial stroma of intercaruncular regions, but there was reduced reactivity in the caruncles and glands. Bovine trophoblast did not express integrin alpha V beta 3 at any stage of pregnancy. In ovine endometrium a different pattern of staining for integrin alpha V beta 3 was observed. Reactivity was not present in the luminal epithelium or trophoblast. There was strong staining of the deep glands and no reactivity in the superficial glands. Osteopontin distribution was similar for sheep and cattle. For both species, apical staining was present on the luminal epithelium and glands and on embryonic tissues. Conclusion In ruminants, integrin alpha V beta 3 and osteopontin do not co-localize at the fetal-maternal interface indicating that these proteins could not interact to facilitate embryo attachment as has been proposed in other species.