Multi-Grid Lanczos

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Clark M. A.

2018-01-01

Full Text Available We present a Lanczos algorithm utilizing multiple grids that reduces the memory requirements both on disk and in working memory by one order of magnitude for RBC/UKQCD’s 48I and 64I ensembles at the physical pion mass. The precision of the resulting eigenvectors is on par with exact deflation.

A look-ahead variant of the Lanczos algorithm and its application to the quasi-minimal residual method for non-Hermitian linear systems. Ph.D. Thesis - Massachusetts Inst. of Technology, Aug. 1991

Science.gov (United States)

Nachtigal, Noel M.

1991-01-01

The Lanczos algorithm can be used both for eigenvalue problems and to solve linear systems. However, when applied to non-Hermitian matrices, the classical Lanczos algorithm is susceptible to breakdowns and potential instabilities. In addition, the biconjugate gradient (BCG) algorithm, which is the natural generalization of the conjugate gradient algorithm to non-Hermitian linear systems, has a second source of breakdowns, independent of the Lanczos breakdowns. Here, we present two new results. We propose an implementation of a look-ahead variant of the Lanczos algorithm which overcomes the breakdowns by skipping over those steps where a breakdown or a near-breakdown would occur. The new algorithm can handle look-ahead steps of any length and requires the same number of matrix-vector products and inner products per step as the classical Lanczos algorithm without look-ahead. Based on the proposed look-ahead Lanczos algorithm, we then present a novel BCG-like approach, the quasi-minimal residual (QMR) method, which avoids the second source of breakdowns in the BCG algorithm. We present details of the new method and discuss some of its properties. In particular, we discuss the relationship between QMR and BCG, showing how one can recover the BCG iterates, when they exist, from the QMR iterates. We also present convergence results for QMR, showing the connection between QMR and the generalized minimal residual (GMRES) algorithm, the optimal method in this class of methods. Finally, we give some numerical examples, both for eigenvalue computations and for non-Hermitian linear systems.

Application of spectral Lanczos decomposition method to large scale problems arising geophysics

Energy Technology Data Exchange (ETDEWEB)

Tamarchenko, T. [Western Atlas Logging Services, Houston, TX (United States)

1996-12-31

This paper presents an application of Spectral Lanczos Decomposition Method (SLDM) to numerical modeling of electromagnetic diffusion and elastic waves propagation in inhomogeneous media. SLDM approximates an action of a matrix function as a linear combination of basis vectors in Krylov subspace. I applied the method to model electromagnetic fields in three-dimensions and elastic waves in two dimensions. The finite-difference approximation of the spatial part of differential operator reduces the initial boundary-value problem to a system of ordinary differential equations with respect to time. The solution to this system requires calculating exponential and sine/cosine functions of the stiffness matrices. Large scale numerical examples are in a good agreement with the theoretical error bounds and stability estimates given by Druskin, Knizhnerman, 1987.

The Lanczos and Conjugate Gradient Algorithms in Finite Precision Arithmetic

Czech Academy of Sciences Publication Activity Database

Meurant, G.; Strakoš, Zdeněk

2006-01-01

Roč. 15, - (2006), s. 471-542 ISSN 0962-4929 R&D Projects: GA AV ČR 1ET400300415 Institutional research plan: CEZ:AV0Z10300504 Keywords : Lanczos method * conjugate gradient method * finite precision arithmetic * numerical stability * iterative methods Subject RIV: BA - General Mathematics

The Physical Interpretation of the Lanczos Tensor

OpenAIRE

Roberts, Mark D.

1999-01-01

The field equations of general relativity can be written as first order differential equations in the Weyl tensor, the Weyl tensor in turn can be written as a first order differential equation in a three index tensor called the Lanczos tensor. The Lanczos tensor plays a similar role in general relativity to that of the vector potential in electro-magnetic theory. The Aharonov-Bohm effect shows that when quantum mechanics is applied to electro-magnetic theory the vector potential is dynamicall...

The Lanczos algorithm for extensive many-body systems in the thermodynamic limit

International Nuclear Information System (INIS)

Witte, N.S.; Bessis, D.

1999-01-01

We establish rigorously the scaling properties of the Lanczos process applied to an arbitrary extensive Many-Body System which is carried to convergence n → ∞ and the thermodynamic limit N → ∞ taken. In this limit the solution for the limiting Lanczos coefficients are found exactly and generally through two equivalent sets of equations, given initial knowledge of the exact cumulant generating function. The measure and the Orthogonal Polynomial System associated with the Lanczos process in this regime are also given explicitly. Some important representations of these Lanczos functions are provided, including Taylor series expansions, and the theorems controlling their general properties are proven. (authors)

On a new implementation of the Lanczos algorithm

International Nuclear Information System (INIS)

Caurier, E.; Zuker, A.P.; Poves, A.

1991-01-01

The new implementation proposed is based on a block labelling scheme described in detail. Time reversal, f-projection, sum rule pivots and strength functions are discussed by the aid of the new implementation of the Lanczos algorithm. Energetics and magnetic dipole behaviour of 48 Ti are studied as examples illustrating the applications of the method. (G.P.) 9 refs.; 4 figs.; 1 tab

Inversion of the fermion matrix and the equivalence of the conjugate gradient and Lanczos algorithms

International Nuclear Information System (INIS)

Burkitt, A.N.; Irving, A.C.

1990-01-01

The Lanczos and conjugate gradient algorithms are widely used in lattice QCD calculations. The previously known close relationship between the two methods is explored and two commonly used implementations are shown to give identically the same results at each iteration, in exact arithmetic, for matrix inversion. The identities between the coefficients of the two algorithms are given, and many of the features of the two algorithms can now be combined. The effects of finite arithmetic are investigated and the particular Lanczos formulation is found to be most stable with respect to rounding errors. (orig.)

Lanczos Tridiagonalization and Core Problems

Czech Academy of Sciences Publication Activity Database

Hnětynková, Iveta; Strakoš, Zdeněk

2007-01-01

Roč. 421, č. 2-3 (2007), s. 243-251 ISSN 0024-3795 R&D Projects: GA AV ČR 1ET400300415 Institutional research plan: CEZ:AV0Z10300504 Keywords : linear approximation problem * orthogonal transformation * core problem * Golub-Kahan bidiagonalization * Lanczos tridiagonalization * Jacobi matrix Subject RIV: BA - General Mathematics Impact factor: 0.702, year: 2007

Use of Lanczos vectors in fluid/structure interaction problems

International Nuclear Information System (INIS)

Jeans, R.; Mathews, I.C.

1992-01-01

The goals of any numerical computational technique used for the solution of structural acoustics problems in the exterior infinite domain should be of accuracy with rapid convergence, robustness, and computational efficiency. A computer program has been developed to achieve each of these three goals. Accuracy and robustness in the numerical representation of the integral equations used to represent the infinite fluid was attained through the use of boundary element implementations of the surface Helmholtz integral equations. The computational efficiency was resolved through the use of Lanczos vectors to model the deformation characteristics of the structure. The authors have developed collocation and variational techniques to overcome the difficulties previously encountered in the numerical implementation of the hypersingular integral operator. The Cauchy singularity present in the integral formulation is made numerically amenable through the use of tangential derivatives in both the collocation and variational techniques. The variational approach has the advantage that the resulting added fluid mass term is symmetric and combines efficiently with a finite element approximation of the structural elastic response. Several different strategies making use of the Lanczos vectors have been investigated. The first involved the use of Lanczos vectors solely to characterize the structural response. This reduced form of the structural dynamical matrix was then substituted back into a Burton and Miller formulation of the acoustic problem. The second strategy investigated involved forming the complex Lanzcos vectors of the dynamical matrix formed from the addition of a symmetrical added fluid matrix to the structural mass matrix. The size of resultant matrix equation set solved at each frequency for this strategy is determined by the number of Lanczos vectors used. 19 refs., 10 figs., 2 tabs

Resolving the issue of branched Hamiltonian in modified Lanczos-Lovelock gravity

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Ruz, Soumendranath; Mandal, Ranajit; Debnath, Subhra; Sanyal, Abhik Kumar

2016-07-01

The Hamiltonian constraint H_c = N{H} = 0, defines a diffeomorphic structure on spatial manifolds by the lapse function N in general theory of relativity. However, it is not manifest in Lanczos-Lovelock gravity, since the expression for velocity in terms of the momentum is multivalued. Thus the Hamiltonian is a branch function of momentum. Here we propose an extended theory of Lanczos-Lovelock gravity to construct a unique Hamiltonian in its minisuperspace version, which results in manifest diffeomorphic invariance and canonical quantization.

Recursion relations for the overlap of a Morse continuum state with a Lanczos basis state

International Nuclear Information System (INIS)

Lutrus, C.K.; Suck Salk, S.H.

1988-01-01

In the resonant reactive scattering theory of Mundel, Berman, and Domcke [Phys. Rev. A 32, 181 (1985)], the overlap of a Morse continuum state and a Lanczos basis state appears in the expression of transition amplitude. In their study, recursion relations for Green's functions in the Lanczos basis were used for computational efficiency. In this paper we derive new recursion relations specifically for the evaluation of overlap between the Morse continuum wave and Lanczos basis state that appears in the transition amplitude of resonant scattering. They are found to be simple to use with great accuracy

Realization of preconditioned Lanczos and conjugate gradient algorithms on optical linear algebra processors.

Science.gov (United States)

Ghosh, A

1988-08-01

Lanczos and conjugate gradient algorithms are important in computational linear algebra. In this paper, a parallel pipelined realization of these algorithms on a ring of optical linear algebra processors is described. The flow of data is designed to minimize the idle times of the optical multiprocessor and the redundancy of computations. The effects of optical round-off errors on the solutions obtained by the optical Lanczos and conjugate gradient algorithms are analyzed, and it is shown that optical preconditioning can improve the accuracy of these algorithms substantially. Algorithms for optical preconditioning and results of numerical experiments on solving linear systems of equations arising from partial differential equations are discussed. Since the Lanczos algorithm is used mostly with sparse matrices, a folded storage scheme to represent sparse matrices on spatial light modulators is also described.

Projective block Lanczos algorithm for dense, Hermitian eigensystems

International Nuclear Information System (INIS)

Webster, F.; Lo, G.C.

1996-01-01

Projection operators are used to effect open-quotes deflation by restrictionclose quotes and it is argued that this is an optimal Lanczos algorithm for memory minimization. Algorithmic optimization is constrained to dense, Hermitian eigensystems where a significant number of the extreme eigenvectors must be obtained reliably and completely. The defining constraints are operator algebra without a matrix representation and semi-orthogonalization without storage of Krylov vectors. other semi-orthogonalization strategies for Lanczos algorithms and conjugate gradient techniques are evaluated within these constraints. Large scale, sparse, complex numerical experiments are performed on clusters of magnetic dipoles, a quantum many-body system that is not block-diagonalizable. Plane-wave, density functional theory of beryllium clusters provides examples of dense complex eigensystems. Use of preconditioners and spectral transformations is evaluated in a preprocessor prior to a high accuracy self-consistent field calculation. 25 refs., 3 figs., 5 tabs

A novel derivation of the boundary term for the action in Lanczos-Lovelock gravity

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Chakraborty, Sumanta; Parattu, Krishnamohan; Padmanabhan, T.

2017-09-01

We present a novel derivation of the boundary term for the action in Lanczos-Lovelock gravity, starting from the boundary contribution in the variation of the Lanczos-Lovelock action. The derivation presented here is straightforward, i.e., one starts from the Lanczos-Lovelock action principle and the action itself dictates the boundary structure and hence the boundary term one needs to add to the action to make it well-posed. It also gives the full structure of the contribution at the boundary of the complete action, enabling us to read off the degrees of freedom to be fixed at the boundary, their corresponding conjugate momenta and the total derivative contribution on the boundary. We also provide a separate derivation of the Gauss-Bonnet case.

The Non–Symmetric s–Step Lanczos Algorithm: Derivation of Efficient Recurrences and Synchronization–Reducing Variants of BiCG and QMR

Directory of Open Access Journals (Sweden)

Feuerriegel Stefan

2015-12-01

Full Text Available The Lanczos algorithm is among the most frequently used iterative techniques for computing a few dominant eigenvalues of a large sparse non-symmetric matrix. At the same time, it serves as a building block within biconjugate gradient (BiCG and quasi-minimal residual (QMR methods for solving large sparse non-symmetric systems of linear equations. It is well known that, when implemented on distributed-memory computers with a huge number of processes, the synchronization time spent on computing dot products increasingly limits the parallel scalability. Therefore, we propose synchronization-reducing variants of the Lanczos, as well as BiCG and QMR methods, in an attempt to mitigate these negative performance effects. These so-called s-step algorithms are based on grouping dot products for joint execution and replacing time-consuming matrix operations by efficient vector recurrences. The purpose of this paper is to provide a rigorous derivation of the recurrences for the s-step Lanczos algorithm, introduce s-step BiCG and QMR variants, and compare the parallel performance of these new s-step versions with previous algorithms.

The intrinsic nature of things the life and science of Cornelius Lanczos

CERN Document Server

Gellai, Barbara

2010-01-01

This book recounts the extraordinary personal journey and scientific story of Hungarian-born mathematician and physicist Cornelius Lanczos. His life and his mathematical accomplishments are inextricably linked, reflecting the social upheavals and historical events that shaped his odyssey in 20th-century Hungary, Germany, the United States, and Ireland. In his life Lanczos demonstrated a remarkable ability to be at the right place, or work with the right person, at the right time. At the start of his scientific career in Germany he worked as Einstein's assistant for one year and stayed in touch

Some uses of the symmetric Lanczos algorithm - and why it works!

Energy Technology Data Exchange (ETDEWEB)

Druskin, V.L. [Schlumberger-Doll Research, Ridgefield, CT (United States); Greenbaum, A. [Courant Institute of Mathematical Sciences, New York, NY (United States); Knizhnerman, L.A. [Central Geophysical Expedition, Moscow (Russian Federation)

1996-12-31

The Lanczos algorithm uses a three-term recurrence to construct an orthonormal basis for the Krylov space corresponding to a symmetric matrix A and a starting vector q{sub 1}. The vectors and recurrence coefficients produced by this algorithm can be used for a number of purposes, including solving linear systems Au = {var_phi} and computing the matrix exponential e{sup -tA}{var_phi}. Although the vectors produced in finite precision arithmetic are not orthogonal, we show why they can still be used effectively for these purposes. The reason is that the 2-norm of the residual is essentially determined by the tridiagonal matrix and the next recurrence coefficient produced by the finite precision Lanczos computation. It follows that if the same tridiagonal matrix and recurrence coefficient are produced by the exact Lanczos algorithm applied to some other problem, then exact arithmetic bounds on the residual for that problem will hold for the finite precision computation. In order to establish exact arithmetic bounds for the different problem, it is necessary to have some information about the eigenvalues of the new coefficient matrix. Here we make use of information already established in the literature, and we also prove a new result for indefinite matrices.

An application of the discrete-time Toda lattice to the progressive algorithm by Lanczos and related problems

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Nakamura, Yoshimasa; Sekido, Hiroto

2018-04-01

The finite or the semi-infinite discrete-time Toda lattice has many applications to various areas in applied mathematics. The purpose of this paper is to review how the Toda lattice appears in the Lanczos algorithm through the quotient-difference algorithm and its progressive form (pqd). Then a multistep progressive algorithm (MPA) for solving linear systems is presented. The extended Lanczos parameters can be given not by computing inner products of the extended Lanczos vectors but by using the pqd algorithm with highly relative accuracy in a lower cost. The asymptotic behavior of the pqd algorithm brings us some applications of MPA related to eigenvectors.

LBAS: Lanczos Bidiagonalization with Subspace Augmentation for Discrete Inverse Problems

DEFF Research Database (Denmark)

Hansen, Per Christian; Abe, Kyniyoshi

The regularizing properties of Lanczos bidiagonalization are powerful when the underlying Krylov subspace captures the dominating components of the solution. In some applications the regularized solution can be further improved by augmenting the Krylov subspace with a low-dimensional subspace tha...

Lanczos potentials and a definition of gravitational entropy for perturbed Friedman-Lemaitre-Robertson-Walker spacetimes

International Nuclear Information System (INIS)

Mena, Filipe C; Tod, Paul

2007-01-01

We give a prescription for constructing a Lanczos potential for a cosmological model which is a purely gravitational perturbation of a Friedman-Lemaitre-Robertson-Walker spacetime. For the radiation equation of state, we find the Lanczos potential explicitly via Fourier transforms. As an application, we follow up a suggestion of Penrose (1979 Singularities and time-asymmetry General Relativity: An Einstein Centenary Survey ed S W Hawking and W Israel (Cambridge: Cambridge University Press)) and propose a definition of gravitational entropy for these cosmologies. With this definition, the gravitational entropy initially is finite if and only if the initial Weyl tensor is finite

Algoritmo de lanczos na variedade de grassmann

OpenAIRE

Lopes, Ana Paula Ferreira Fernandes; Viamonte, Ana Júlia; Pascoal, António José

2008-01-01

O problema do cálculo de valores próprios, vectores próprios e subespaços invariantes está presente em áreas tão diversas como Engenharia, Física, Ciências de Computação e Matemática. Considerando a importância deste problema em tantas aplicações práticas, não é de surpreender que tenha sido e continue a ser objecto de intensa investigação, dando corpo a uma literatura muito vasta. Desenvolvemos um novo algoritmo de Lanczos na variedade de Grassmann. Este trabalho surgiu na ...

Estimation and calibration of observation impact signals using the Lanczos method in NOAA/NCEP data assimilation system

Directory of Open Access Journals (Sweden)

M. Wei

2012-09-01

Full Text Available Despite the tremendous progress that has been made in data assimilation (DA methodology, observing systems that reduce observation errors, and model improvements that reduce background errors, the analyses produced by the best available DA systems are still different from the truth. Analysis error and error covariance are important since they describe the accuracy of the analyses, and are directly related to the future forecast errors, i.e., the forecast quality. In addition, analysis error covariance is critically important in building an efficient ensemble forecast system (EFS.

Estimating analysis error covariance in an ensemble-based Kalman filter DA is straightforward, but it is challenging in variational DA systems, which have been in operation at most NWP (Numerical Weather Prediction centers. In this study, we use the Lanczos method in the NCEP (the National Centers for Environmental Prediction Gridpoint Statistical Interpolation (GSI DA system to look into other important aspects and properties of this method that were not exploited before. We apply this method to estimate the observation impact signals (OIS, which are directly related to the analysis error variances. It is found that the smallest eigenvalue of the transformed Hessian matrix converges to one as the number of minimization iterations increases. When more observations are assimilated, the convergence becomes slower and more eigenvectors are needed to retrieve the observation impacts. It is also found that the OIS over data-rich regions can be represented by the eigenvectors with dominant eigenvalues.

Since only a limited number of eigenvectors can be computed due to computational expense, the OIS is severely underestimated, and the analysis error variance is consequently overestimated. It is found that the mean OIS values for temperature and wind components at typical model levels are increased by about 1.5 times when the number of eigenvectors is doubled

2D XXZ model ground state properties using an analytic Lanczos expansion

International Nuclear Information System (INIS)

Witte, N.S.; Hollenberg, L.C.L.; Weihong Zheng

1997-01-01

A formalism was developed for calculating arbitrary expectation values for any extensive lattice Hamiltonian system using a new analytic Lanczos expansion, or plaquette expansion, and a recently proved exact theorem for ground state energies. The ground state energy, staggered magnetisation and the excited state gap of the 2D anisotropic antiferromagnetic Heisenberg Model are then calculated using this expansion for a range of anisotropy parameters and compared to other moment based techniques, such as the t-expansion, and spin-wave theory and series expansion methods. It was found that far from the isotropic point all moment methods give essentially very similar results, but near the isotopic point the plaquette expansion is generally better than the others. 20 refs., 6 tabs

Conjugate gradient type methods for linear systems with complex symmetric coefficient matrices

Science.gov (United States)

Freund, Roland

1989-01-01

We consider conjugate gradient type methods for the solution of large sparse linear system Ax equals b with complex symmetric coefficient matrices A equals A(T). Such linear systems arise in important applications, such as the numerical solution of the complex Helmholtz equation. Furthermore, most complex non-Hermitian linear systems which occur in practice are actually complex symmetric. We investigate conjugate gradient type iterations which are based on a variant of the nonsymmetric Lanczos algorithm for complex symmetric matrices. We propose a new approach with iterates defined by a quasi-minimal residual property. The resulting algorithm presents several advantages over the standard biconjugate gradient method. We also include some remarks on the obvious approach to general complex linear systems by solving equivalent real linear systems for the real and imaginary parts of x. Finally, numerical experiments for linear systems arising from the complex Helmholtz equation are reported.

Preconditioned Krylov subspace methods for eigenvalue problems

Energy Technology Data Exchange (ETDEWEB)

Wu, Kesheng; Saad, Y.; Stathopoulos, A. [Univ. of Minnesota, Minneapolis, MN (United States)

1996-12-31

Lanczos algorithm is a commonly used method for finding a few extreme eigenvalues of symmetric matrices. It is effective if the wanted eigenvalues have large relative separations. If separations are small, several alternatives are often used, including the shift-invert Lanczos method, the preconditioned Lanczos method, and Davidson method. The shift-invert Lanczos method requires direct factorization of the matrix, which is often impractical if the matrix is large. In these cases preconditioned schemes are preferred. Many applications require solution of hundreds or thousands of eigenvalues of large sparse matrices, which pose serious challenges for both iterative eigenvalue solver and preconditioner. In this paper we will explore several preconditioned eigenvalue solvers and identify the ones suited for finding large number of eigenvalues. Methods discussed in this paper make up the core of a preconditioned eigenvalue toolkit under construction.

Identity of the conjugate gradient and Lanczos algorithms for matrix inversion in lattice fermion calculations

International Nuclear Information System (INIS)

Burkitt, A.N.; Irving, A.C.

1988-01-01

Two of the methods that are widely used in lattice gauge theory calculations requiring inversion of the fermion matrix are the Lanczos and the conjugate gradient algorithms. Those algorithms are already known to be closely related. In fact for matrix inversion, in exact arithmetic, they give identical results at each iteration and are just alternative formulations of a single algorithm. This equivalence survives rounding errors. We give the identities between the coefficients of the two formulations, enabling many of the best features of them to be combined. (orig.)

Total photoionization cross-sections of excited electronic states by the algebraic diagrammatic construction-Stieltjes-Lanczos method.

Science.gov (United States)

Ruberti, M; Yun, R; Gokhberg, K; Kopelke, S; Cederbaum, L S; Tarantelli, F; Averbukh, V

2014-05-14

Here, we extend the L2 ab initio method for molecular photoionization cross-sections introduced in Gokhberg et al. [J. Chem. Phys. 130, 064104 (2009)] and benchmarked in Ruberti et al. [J. Chem. Phys. 139, 144107 (2013)] to the calculation of total photoionization cross-sections of molecules in electronically excited states. The method is based on the ab initio description of molecular electronic states within the many-electron Green's function approach, known as algebraic diagrammatic construction (ADC), and on the application of Stieltjes-Chebyshev moment theory to Lanczos pseudospectra of the ADC electronic Hamiltonian. The intermediate state representation of the dipole operator in the ADC basis is used to compute the transition moments between the excited states of the molecule. We compare the results obtained using different levels of the many-body theory, i.e., ADC(1), ADC(2), and ADC(2)x for the first two excited states of CO, N2, and H2O both at the ground state and the excited state equilibrium or saddle point geometries. We find that the single excitation ADC(1) method is not adequate even at the qualitative level and that the inclusion of double electronic excitations for description of excited state photoionization is essential. Moreover, we show that the use of the extended ADC(2)x method leads to a substantial systematic difference from the strictly second-order ADC(2). Our calculations demonstrate that a theoretical modelling of photoionization of excited states requires an intrinsically double excitation theory with respect to the ground state and cannot be achieved by the standard single excitation methods with the ground state as a reference.

Implementation of the Lanczos algorithm for the Hubbard model on the Connection Machine system

International Nuclear Information System (INIS)

Leung, P.W.; Oppenheimer, P.E.

1992-01-01

An implementation of the Lanczos algorithm for the exact diagonalization of the two dimensional Hubbard model on a 4x4 square lattice on the Connection Machine CM-2 system is described. The CM-2 is a massively parallel machine with distributed memory. The program is written in C/PARIS. This implementation minimizes memory usage by generating the matrix elements as needed instead of storing them. The Lanczos vectors are stored across the local memory of the processors. Using translational symmetry only, the dimension of the Hilbert space at half filling is more than 10 million. A speed of about 2.4 min per iteration is achieved on a 64K CM-2. This implementation is scalable. Running it on a bigger machine with more processors speeds up the process. The performance analysis of this implementation is shown and discuss its advantages and disadvantages are discussed

Shape coexistence, Lanczos techniques, and large-basis shell-model calculations

Energy Technology Data Exchange (ETDEWEB)

Haxton, W C [Washington Univ., Seattle, WA (United States). Dept. of Physics

1992-08-01

I discuss numerical many-body techniques based on the Lanczos algorithm and their applications to nuclear structure problems. Examples include shape coexistence, inclusive response functions, and weak interaction rates in {sup 16}O; weak-coupling descriptions of the O{sup +} bands in isotopes of Ge and Se; and the evaluation of the nuclear Green`s functions that arise in two-neutrino {beta}{beta} decay and in nuclear anapole and electric dipole moment calculations. (author). 11 refs., 2 tabs., 4 figs.

Overlapping domain decomposition preconditioners for the generalized Davidson method for the eigenvalue problem

Energy Technology Data Exchange (ETDEWEB)

Stathopoulos, A.; Fischer, C.F. [Vanderbilt Univ., Nashville, TN (United States); Saad, Y.

1994-12-31

The solution of the large, sparse, symmetric eigenvalue problem, Ax = {lambda}x, is central to many scientific applications. Among many iterative methods that attempt to solve this problem, the Lanczos and the Generalized Davidson (GD) are the most widely used methods. The Lanczos method builds an orthogonal basis for the Krylov subspace, from which the required eigenvectors are approximated through a Rayleigh-Ritz procedure. Each Lanczos iteration is economical to compute but the number of iterations may grow significantly for difficult problems. The GD method can be considered a preconditioned version of Lanczos. In each step the Rayleigh-Ritz procedure is solved and explicit orthogonalization of the preconditioned residual ((M {minus} {lambda}I){sup {minus}1}(A {minus} {lambda}I)x) is performed. Therefore, the GD method attempts to improve convergence and robustness at the expense of a more complicated step.

Photoionization cross section by Stieltjes imaging applied to coupled cluster Lanczos pseudo-spectra

Science.gov (United States)

Cukras, Janusz; Coriani, Sonia; Decleva, Piero; Christiansen, Ove; Norman, Patrick

2013-09-01

A recently implemented asymmetric Lanczos algorithm for computing (complex) linear response functions within the coupled cluster singles (CCS), coupled cluster singles and iterative approximate doubles (CC2), and coupled cluster singles and doubles (CCSD) is coupled to a Stieltjes imaging technique in order to describe the photoionization cross section of atoms and molecules, in the spirit of a similar procedure recently proposed by Averbukh and co-workers within the Algebraic Diagrammatic Construction approach. Pilot results are reported for the atoms He, Ne, and Ar and for the molecules H2, H2O, NH3, HF, CO, and CO2.

Photoionization cross section by Stieltjes imaging applied to coupled cluster Lanczos pseudo-spectra

International Nuclear Information System (INIS)

Cukras, Janusz; Coriani, Sonia; Decleva, Piero; Christiansen, Ove; Norman, Patrick

2013-01-01

A recently implemented asymmetric Lanczos algorithm for computing (complex) linear response functions within the coupled cluster singles (CCS), coupled cluster singles and iterative approximate doubles (CC2), and coupled cluster singles and doubles (CCSD) is coupled to a Stieltjes imaging technique in order to describe the photoionization cross section of atoms and molecules, in the spirit of a similar procedure recently proposed by Averbukh and co-workers within the Algebraic Diagrammatic Construction approach. Pilot results are reported for the atoms He, Ne, and Ar and for the molecules H 2 , H 2 O, NH 3 , HF, CO, and CO 2

The analytic Lanczos method

International Nuclear Information System (INIS)

Witte, N.S.

1998-01-01

The classical formalism of the Moment Problem has been combined with a cumulant approach and applied to the extensive many-body problem. This has yielded many new exact results for many-body systems in the thermodynamic limit - for the ground state energy, for excited state gaps, and for arbitrary ground state averages. The method applies to any extensive Hamiltonian system, for any phase or symmetry arising in the model, whether on a lattice or in the continuum, and for any dimensionality. The theorems are of a nonperturbative nature with respect to any couplings occuring in the model. (Copyright (1998) World Scientific Publishing Co. Pte. Ltd)

Photoionization cross section by Stieltjes imaging applied to coupled cluster Lanczos pseudo-spectra

Energy Technology Data Exchange (ETDEWEB)

Cukras, Janusz; Coriani, Sonia; Decleva, Piero [Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, via L. Giorgieri 1, I-34127 Trieste (Italy); Christiansen, Ove [Department of Chemistry, Aarhus University, DK-8000 Aarhus C (Denmark); Norman, Patrick [Department of Physics, Chemistry and Biology, Linköping University, SE-581 83 Linköping (Sweden)

2013-09-07

A recently implemented asymmetric Lanczos algorithm for computing (complex) linear response functions within the coupled cluster singles (CCS), coupled cluster singles and iterative approximate doubles (CC2), and coupled cluster singles and doubles (CCSD) is coupled to a Stieltjes imaging technique in order to describe the photoionization cross section of atoms and molecules, in the spirit of a similar procedure recently proposed by Averbukh and co-workers within the Algebraic Diagrammatic Construction approach. Pilot results are reported for the atoms He, Ne, and Ar and for the molecules H{sub 2}, H{sub 2}O, NH{sub 3}, HF, CO, and CO{sub 2}.

Lanczos-driven coupled-cluster damped linear response theory for molecules in polarizable environments

DEFF Research Database (Denmark)

List, Nanna Holmgaard; Coriani, Sonia; Kongsted, Jacob

2014-01-01

are specifically motivated by a twofold aim: (i) computation of core excitations in realistic surroundings and (ii) examination of the effect of the differential response of the environment upon excitation solely related to the CC multipliers (herein denoted the J matrix) in computations of excitation energies......We present an extension of a previously reported implementation of a Lanczos-driven coupled-cluster (CC) damped linear response approach to molecules in condensed phases, where the effects of a surrounding environment are incorporated by means of the polarizable embedding formalism. We...... and transition moments of polarizable-embedded molecules. Numerical calculations demonstrate that the differential polarization of the environment due to the first-order CC multipliers provides only minor contributions to the solvatochromic shift for all transitions considered. We thus complement previous works...

Extending the eigCG algorithm to nonsymmetric Lanczos for linear systems with multiple right-hand sides

Energy Technology Data Exchange (ETDEWEB)

Abdel-Rehim, A M; Stathopoulos, Andreas; Orginos, Kostas

2014-08-01

The technique that was used to build the EigCG algorithm for sparse symmetric linear systems is extended to the nonsymmetric case using the BiCG algorithm. We show that, similarly to the symmetric case, we can build an algorithm that is capable of computing a few smallest magnitude eigenvalues and their corresponding left and right eigenvectors of a nonsymmetric matrix using only a small window of the BiCG residuals while simultaneously solving a linear system with that matrix. For a system with multiple right-hand sides, we give an algorithm that computes incrementally more eigenvalues while solving the first few systems and then uses the computed eigenvectors to deflate BiCGStab for the remaining systems. Our experiments on various test problems, including Lattice QCD, show the remarkable ability of EigBiCG to compute spectral approximations with accuracy comparable to that of the unrestarted, nonsymmetric Lanczos. Furthermore, our incremental EigBiCG followed by appropriately restarted and deflated BiCGStab provides a competitive method for systems with multiple right-hand sides.

Brown-York quasilocal energy in Lanczos-Lovelock gravity and black hole horizons

Science.gov (United States)

Chakraborty, Sumanta; Dadhich, Naresh

2015-12-01

A standard candidate for quasilocal energy in general relativity is the Brown-York energy, which is essentially a two dimensional surface integral of the extrinsic curvature on the two-boundary of a spacelike hypersurface referenced to flat spacetime. Several years back one of us had conjectured that the black hole horizon is defined by equipartition of gravitational and non-gravitational energy. By employing the above definition of quasilocal Brown-York energy, we have verified the equipartition conjecture for static charged and charged axi-symmetric black holes in general relativity. We have further generalized the Brown-York formalism to all orders in Lanczos-Lovelock theories of gravity and have verified the conjecture for pure Lovelock charged black hole in all even d = 2 m + 2 dimensions, where m is the degree of Lovelock action. It turns out that the equipartition conjecture works only for pure Lovelock, and not for Einstein-Lovelock black holes.

Brown-York quasilocal energy in Lanczos-Lovelock gravity and black hole horizons

International Nuclear Information System (INIS)

Chakraborty, Sumanta; Dadhich, Naresh

2015-01-01

A standard candidate for quasilocal energy in general relativity is the Brown-York energy, which is essentially a two dimensional surface integral of the extrinsic curvature on the two-boundary of a spacelike hypersurface referenced to flat spacetime. Several years back one of us had conjectured that the black hole horizon is defined by equipartition of gravitational and non-gravitational energy. By employing the above definition of quasilocal Brown-York energy, we have verified the equipartition conjecture for static charged and charged axi-symmetric black holes in general relativity. We have further generalized the Brown-York formalism to all orders in Lanczos-Lovelock theories of gravity and have verified the conjecture for pure Lovelock charged black hole in all even d=2m+2 dimensions, where m is the degree of Lovelock action. It turns out that the equipartition conjecture works only for pure Lovelock, and not for Einstein-Lovelock black holes.

A numerical method for eigenvalue problems in modeling liquid crystals

Energy Technology Data Exchange (ETDEWEB)

Baglama, J.; Farrell, P.A.; Reichel, L.; Ruttan, A. [Kent State Univ., OH (United States); Calvetti, D. [Stevens Inst. of Technology, Hoboken, NJ (United States)

1996-12-31

Equilibrium configurations of liquid crystals in finite containments are minimizers of the thermodynamic free energy of the system. It is important to be able to track the equilibrium configurations as the temperature of the liquid crystals decreases. The path of the minimal energy configuration at bifurcation points can be computed from the null space of a large sparse symmetric matrix. We describe a new variant of the implicitly restarted Lanczos method that is well suited for the computation of extreme eigenvalues of a large sparse symmetric matrix, and we use this method to determine the desired null space. Our implicitly restarted Lanczos method determines adoptively a polynomial filter by using Leja shifts, and does not require factorization of the matrix. The storage requirement of the method is small, and this makes it attractive to use for the present application.

Thick restarting of the Davidson method: An extension to implicit restarting

Energy Technology Data Exchange (ETDEWEB)

Stathopoulos, A.; Yousef Saad; Wu, Kesheng [Univ. of Minnesota, Minneapolis, MN (United States)

1996-12-31

The solution of the large, sparse, eigenvalue problem Ax = {lambda}x, for a few eigenpairs is central to many scientific applications. The Arnoldi method, and its equivalent in the symmetric case the Lanczos method, have been the traditional approach to solving these problems. Preconditioning, through some shift-and-invert technique, is frequently employed, because of the difficulty of these problems. A different approach is followed by the Generalized Davidson (GD) method which is a popular preconditioned variant of the Lanczos iteration. Instead of using a three-term recurrence to build an orthonormal basis for the Krylov subspace, the GD algorithm obtains the next basis vector by explicitly orthogonalizing the preconditioned residual (M - {lambda}I){sup -1} (A - {lambda}I)x against the existing basis. A straightforward extension to the non-symmetric case has also been studied in. The GD method can be regarded as a way of improving convergence and robustness at the expense of a more complicated step.

Variable scaling method and Stark effect in hydrogen atom

International Nuclear Information System (INIS)

Choudhury, R.K.R.; Ghosh, B.

1983-09-01

By relating the Stark effect problem in hydrogen-like atoms to that of the spherical anharmonic oscillator we have found simple formulas for energy eigenvalues for the Stark effect. Matrix elements have been calculated using 0(2,1) algebra technique after Armstrong and then the variable scaling method has been used to find optimal solutions. Our numerical results are compared with those of Hioe and Yoo and also with the results obtained by Lanczos. (author)

Study on non-universal critical behaviour in Ising model with defects

International Nuclear Information System (INIS)

Guimaraes, L.G.

1986-01-01

One-dimensional quantum analogous of two-dimensional Ising models with line and step type linear defects are studied. The phenomenological renormalization group was approached using conformal invariance for relating critical exponent N sup(*) sub(H). Aiming to obtain the Hamiltonian diagonal, Lanczos tridiagonal method was used. (H.C.K.)

Three-dimensional magnetotelluric modeling using SLDM method; Supekutoru bunkai wo fukashita ranchosu process ni motozuku MT ho sanjigen keisan

Energy Technology Data Exchange (ETDEWEB)

Yamane, K; Takasugi, S [GERD Geothermal Energy Research and Development Co. Ltd., Tokyo (Japan)

1996-10-01

For 3-D magnetotelluric (MT) modeling, spectral Lanczos decomposition method (SLDM) was applied as high-speed high- accuracy modeling algorithm. SLDM was developed by Druskin to reduce computational time considerably by obtaining responses in the whole frequency domain all at once. The computational time of 3-D modeling was reduced by introducing Maxwell`s equation and Lanczos matrix as transformation matrix. The computation was carried out on the 1km{times}2km{times}2km low resistivity model body of 5 ohm{center_dot}m supposed in the uniform ground of 100 ohm{center_dot}m using 43{times}43{times}31 nodes at 17 frequencies ranging from 0.01Hz to 100Hz. Apparent resistivity at lower frequency decreased with approach to the low resistivity body. The computational time amounted to 6 hours 14 minutes. The 3-D MT modeling using SLDM method was independent of frequency, and its algorithm was superior in computational speed, however, it was inferior in computational time as the number of measuring nodes increased. 2 refs., 3 figs.

A direct recursive residue generation method: application to photoionization of hydrogen in static electric fields

International Nuclear Information System (INIS)

Karlsson, H.O.; Goscinski, O.

1994-01-01

In studies of hydrogenic systems via the recursive residue generation method (RRGM) the major bottleneck is the matrix vector product HC, between the Hamiltonian matrix H and a Lanczos vector C. For highly excited states and/or strong perturbations the size of H grows fast leading to storage problems. By making use of direct methods, i.e. avoidance of explicit construction of large Hamiltonian matrices, such problems can be overcome. Utilizing the underlying analytical properties of the Laguerre basis e -λr L k 2l+2 (2λr) a direct RRGM (D-RRGM) for the unperturbed hydrogenic Hamiltonian is derived, changing the storage needs from scaling as N 2 to 4N where N is the number of radial functions for each factorized H o (l,m) block with the possibility of parallel processing. A further computational simplification is introduced by putting the expression for the photoionization (PI) cross section in the rational form conventionally used in the representation of density of states (DOS). This allows the construction of the PI cross section directly from the tridiagonal Lanczos matrix avoiding the explicit calculation of individual eigen values and eigenvectors. (Author)

New Parallel Algorithms for Structural Analysis and Design of Aerospace Structures

Science.gov (United States)

Nguyen, Duc T.

1998-01-01

Subspace and Lanczos iterations have been developed, well documented, and widely accepted as efficient methods for obtaining p-lowest eigen-pair solutions of large-scale, practical engineering problems. The focus of this paper is to incorporate recent developments in vectorized sparse technologies in conjunction with Subspace and Lanczos iterative algorithms for computational enhancements. Numerical performance, in terms of accuracy and efficiency of the proposed sparse strategies for Subspace and Lanczos algorithm, is demonstrated by solving for the lowest frequencies and mode shapes of structural problems on the IBM-R6000/590 and SunSparc 20 workstations.

Quantum lattice model solver package HΦ. Applications to thermal and spin excitations in proximity of spin liquids

International Nuclear Information System (INIS)

Yamaji, Youhei; Misawa, Takahiro; Yoshimi, Kazuyoshi; Kawamura, Mitsuaki; Kawashima, Naoki; Todo, Synge

2017-01-01

HΦ is a program package based on the Lanczos-type method applicable to a broad range of quantum lattice models. HΦ has a flexible and simple-to-use interface, and runs efficiently on massively parallel computers. Unlike most existing packages, HΦ supports finite-temperature calculations. In this article, we apply HΦ to typical strongly correlated electron systems in proximity to quantum spin liquids. (author)

The structure of the polynomials in preconditioned BiCG algorithms and the switching direction of preconditioned systems

OpenAIRE

Itoh, Shoji; Sugihara, Masaaki

2016-01-01

We present a theorem that defines the direction of a preconditioned system for the bi-conjugate gradient (BiCG) method, and we extend it to preconditioned bi-Lanczos-type algorithms. We show that the direction of a preconditioned system is switched by construction and by the settings of the initial shadow residual vector. We analyze and compare the polynomial structures of four preconditioned BiCG algorithms.

Modal analysis of a small vertical axis wind turbine (Type DARRIEUS

Directory of Open Access Journals (Sweden)

Ion NILA

2012-06-01

Full Text Available This paper reports a brief study on free vibration analysis for determining parameters such as natural frequencies and mode shapes for vertical axis wind turbines (VAWT for an urban application. This study is focused on numerical work using available finite element software. For further understanding of the wind turbine dynamic analysis, two vibration parameters of dynamic response have been studied, namely natural frequencies and mode shapes.Block Lanczos method has been used to analyze the natural frequency while wind turbine mode shapes have been utilized because of their accuracy and faster solution. In this problem 12 modes of structure have been extracted.

An exact variational method to calculate rovibrational spectra of polyatomic molecules with large amplitude motion

Energy Technology Data Exchange (ETDEWEB)

Yu, Hua-Gen, E-mail: hgy@bnl.gov [Division of Chemistry, Department of Energy and Photon Sciences, Brookhaven National Laboratory, Upton, New York 11973-5000 (United States)

2016-08-28

We report a new full-dimensional variational algorithm to calculate rovibrational spectra of polyatomic molecules using an exact quantum mechanical Hamiltonian. The rovibrational Hamiltonian of system is derived in a set of orthogonal polyspherical coordinates in the body-fixed frame. It is expressed in an explicitly Hermitian form. The Hamiltonian has a universal formulation regardless of the choice of orthogonal polyspherical coordinates and the number of atoms in molecule, which is suitable for developing a general program to study the spectra of many polyatomic systems. An efficient coupled-state approach is also proposed to solve the eigenvalue problem of the Hamiltonian using a multi-layer Lanczos iterative diagonalization approach via a set of direct product basis set in three coordinate groups: radial coordinates, angular variables, and overall rotational angles. A simple set of symmetric top rotational functions is used for the overall rotation whereas a potential-optimized discrete variable representation method is employed in radial coordinates. A set of contracted vibrationally diabatic basis functions is adopted in internal angular variables. Those diabatic functions are first computed using a neural network iterative diagonalization method based on a reduced-dimension Hamiltonian but only once. The final rovibrational energies are computed using a modified Lanczos method for a given total angular momentum J, which is usually fast. Two numerical applications to CH{sub 4} and H{sub 2}CO are given, together with a comparison with previous results.

Parallelization of mathematical library for generalized eigenvalue problem for real band matrices

International Nuclear Information System (INIS)

Tanaka, Yasuhisa.

1997-05-01

This research has focused on a parallelization of the mathematical library for a generalized eigenvalue problem for real band matrices on IBM SP and Hitachi SR2201. The origin of the library is LASO (Lanczos Algorithm with Selective Orthogonalization), which was developed on the basis of Block Lanczos method for standard eigenvalue problem for real band matrices at Texas University. We adopted D.O.F. (Degree Of Freedom) decomposition method for a parallelization of this library, and evaluated its parallel performance. (author)

Regularization of the Fourier series of discontinuous functions by various summation methods

Energy Technology Data Exchange (ETDEWEB)

Ahmad, S.S.; Beghi, L. (Padua Univ. (Italy). Seminario Matematico)

1983-07-01

In this paper the regularization by various summation methods of the Fourier series of functions containing discontinuities of the first and second kind are studied and the results of the numerical analyses referring to some typical periodic functions are presented. In addition to the Cesaro and Lanczos weightings, a new (i.e. cosine) weighting for accelerating the convergence rate is proposed. A comparison with the results obtained by Garibotti and Massaro with the punctual Pade approximants (PPA) technique in case of a periodic step function is also carried out.

Generation and importance of linked and irreducible moment diagrams in the recursive residue generation method

International Nuclear Information System (INIS)

Schek, I.; Wyatt, R.E.

1986-01-01

Molecular multiphoton processes are treated in the Recursive Residue Generation Method (A. Nauts and R.E. Wyatt, Phys. Rev. Lett 51, 2238 (1983)) by converting the molecular-field Hamiltonian matrix into tridiagonal form, using the Lanczos equations. In this study, the self-energies (diagonal) and linking (off-diagaonal) terms in the tridiagonal matrix are obtained by comparing linked moment diagrams in both representations. The dynamics of the source state is introduced and computed in terms of the linked and the irreducible moments

International Conference on Computing Methods in Applied Sciences and Engineering (9th) Held in Paris, France on 29 January-2 February 1990

Science.gov (United States)

1990-02-02

Brisman, and J. Reld, Direct Metiod for Sparse Matrices, Clarendon Press, Oxford, 1986. [3] I.S. Duff, E.G. Grimes, and J.G. Lewis, Sparse matriz test...the N x m matrix with column vectors vl,...,v, and by Hm the m x m Hessenberg matriz whose nonzero entries are defined by the algorithm. Then the...class of methods reduces to the first one. In the nonsymmetric case, the biconjugate gradient method ( BCG ) due to Lanczos [21] and Fletcher [16] is a

Solving symmetric-definite quadratic lambda-matrix problems without factorization

International Nuclear Information System (INIS)

Scott, D.S.; Ward, R.C.

1982-01-01

Algorithms are presented for computing some of the eigenvalues and their associated eigenvectors of the quadratic lambda-matrix M lambda 2 C lambda + K. M, C, and K are assumed to have special symmetry-type properties which insure that theory analogous to the standard symmetric eigenproblem exists. The algorithms are based on a generalization of the Rayleigh quotient and the Lanczos method for computing eigenpairs of standard symmetric eigenproblems. Monotone quadratic convergence of the basic method is proved. Test examples are presented

Accelerating nuclear configuration interaction calculations through a preconditioned block iterative eigensolver

Science.gov (United States)

Shao, Meiyue; Aktulga, H. Metin; Yang, Chao; Ng, Esmond G.; Maris, Pieter; Vary, James P.

2018-01-01

We describe a number of recently developed techniques for improving the performance of large-scale nuclear configuration interaction calculations on high performance parallel computers. We show the benefit of using a preconditioned block iterative method to replace the Lanczos algorithm that has traditionally been used to perform this type of computation. The rapid convergence of the block iterative method is achieved by a proper choice of starting guesses of the eigenvectors and the construction of an effective preconditioner. These acceleration techniques take advantage of special structure of the nuclear configuration interaction problem which we discuss in detail. The use of a block method also allows us to improve the concurrency of the computation, and take advantage of the memory hierarchy of modern microprocessors to increase the arithmetic intensity of the computation relative to data movement. We also discuss the implementation details that are critical to achieving high performance on massively parallel multi-core supercomputers, and demonstrate that the new block iterative solver is two to three times faster than the Lanczos based algorithm for problems of moderate sizes on a Cray XC30 system.

A Fast Enhanced Secure Image Chaotic Cryptosystem Based on Hybrid Chaotic Magic Transform

Directory of Open Access Journals (Sweden)

Srinivas Koppu

2017-01-01

Full Text Available An enhanced secure image chaotic cryptosystem has been proposed based on hybrid CMT-Lanczos algorithm. We have achieved fast encryption and decryption along with privacy of images. The pseudorandom generator has been used along with Lanczos algorithm to generate root characteristics and eigenvectors. Using hybrid CMT image, pixels are shuffled to accomplish excellent randomness. Compared with existing methods, the proposed method had more robustness to various attacks: brute-force attack, known cipher plaintext, chosen-plaintext, security key space, key sensitivity, correlation analysis and information entropy, and differential attacks. Simulation results show that the proposed methods give better result in protecting images with low-time complexity.

[Molecular typing methods for Pasteurella multocida-A review].

Science.gov (United States)

Peng, Zhong; Liang, Wan; Wu, Bin

2016-10-04

Pasteurella multocida is an important gram-negative pathogenic bacterium that could infect wide ranges of animals. Humans could also be infected by P. multocida via animal bite or scratching. Current typing methods for P. multocida include serological typing methods and molecular typing methods. Of them, serological typing methods are based on immunological assays, which are too complicated for clinical bacteriological studies. However, the molecular methods including multiple PCRs and multilocus sequence typing (MLST) methods are more suitable for bacteriological studies of P. multocida in clinic, with their simple operation, high efficiency and accurate detection compared to the traditional serological typing methods, they are therefore widely used. In the current review, we briefly describe the molecular typing methods for P. multocida. Our aim is to provide a knowledge-foundation for clinical bacteriological investigation especially the molecular investigation for P. multocida.

Algorithms for sparse, symmetric, definite quadratic lambda-matrix eigenproblems

International Nuclear Information System (INIS)

Scott, D.S.; Ward, R.C.

1981-01-01

Methods are presented for computing eigenpairs of the quadratic lambda-matrix, M lambda 2 + C lambda + K, where M, C, and K are large and sparse, and have special symmetry-type properties. These properties are sufficient to insure that all the eigenvalues are real and that theory analogous to the standard symmetric eigenproblem exists. The methods employ some standard techniques such as partial tri-diagonalization via the Lanczos Method and subsequent eigenpair calculation, shift-and- invert strategy and subspace iteration. The methods also employ some new techniques such as Rayleigh-Ritz quadratic roots and the inertia of symmetric, definite, quadratic lambda-matrices

Measuring Ambiguity in HLA Typing Methods

Science.gov (United States)

Madbouly, Abeer; Freeman, John; Maiers, Martin

2012-01-01

In hematopoietic stem cell transplantation, donor selection is based primarily on matching donor and patient HLA genes. These genes are highly polymorphic and their typing can result in exact allele assignment at each gene (the resolution at which patients and donors are matched), but it can also result in a set of ambiguous assignments, depending on the typing methodology used. To facilitate rapid identification of matched donors, registries employ statistical algorithms to infer HLA alleles from ambiguous genotypes. Linkage disequilibrium information encapsulated in haplotype frequencies is used to facilitate prediction of the most likely haplotype assignment. An HLA typing with less ambiguity produces fewer high-probability haplotypes and a more reliable prediction. We estimated ambiguity for several HLA typing methods across four continental populations using an information theory-based measure, Shannon's entropy. We used allele and haplotype frequencies to calculate entropy for different sets of 1,000 subjects with simulated HLA typing. Using allele frequencies we calculated an average entropy in Caucasians of 1.65 for serology, 1.06 for allele family level, 0.49 for a 2002-era SSO kit, and 0.076 for single-pass SBT. When using haplotype frequencies in entropy calculations, we found average entropies of 0.72 for serology, 0.73 for allele family level, 0.05 for SSO, and 0.002 for single-pass SBT. Application of haplotype frequencies further reduces HLA typing ambiguity. We also estimated expected confirmatory typing mismatch rates for simulated subjects. In a hypothetical registry with all donors typed using the same method, the entropy values based on haplotype frequencies correspond to confirmatory typing mismatch rates of 1.31% for SSO versus only 0.08% for SBT. Intermediate-resolution single-pass SBT contains the least ambiguity of the methods we evaluated and therefore the most certainty in allele prediction. The presented measure objectively evaluates HLA

Measuring ambiguity in HLA typing methods.

Directory of Open Access Journals (Sweden)

Vanja Paunić

Full Text Available In hematopoietic stem cell transplantation, donor selection is based primarily on matching donor and patient HLA genes. These genes are highly polymorphic and their typing can result in exact allele assignment at each gene (the resolution at which patients and donors are matched, but it can also result in a set of ambiguous assignments, depending on the typing methodology used. To facilitate rapid identification of matched donors, registries employ statistical algorithms to infer HLA alleles from ambiguous genotypes. Linkage disequilibrium information encapsulated in haplotype frequencies is used to facilitate prediction of the most likely haplotype assignment. An HLA typing with less ambiguity produces fewer high-probability haplotypes and a more reliable prediction. We estimated ambiguity for several HLA typing methods across four continental populations using an information theory-based measure, Shannon's entropy. We used allele and haplotype frequencies to calculate entropy for different sets of 1,000 subjects with simulated HLA typing. Using allele frequencies we calculated an average entropy in Caucasians of 1.65 for serology, 1.06 for allele family level, 0.49 for a 2002-era SSO kit, and 0.076 for single-pass SBT. When using haplotype frequencies in entropy calculations, we found average entropies of 0.72 for serology, 0.73 for allele family level, 0.05 for SSO, and 0.002 for single-pass SBT. Application of haplotype frequencies further reduces HLA typing ambiguity. We also estimated expected confirmatory typing mismatch rates for simulated subjects. In a hypothetical registry with all donors typed using the same method, the entropy values based on haplotype frequencies correspond to confirmatory typing mismatch rates of 1.31% for SSO versus only 0.08% for SBT. Intermediate-resolution single-pass SBT contains the least ambiguity of the methods we evaluated and therefore the most certainty in allele prediction. The presented measure

Fundamental quadratic variational principle underlying general relativity

International Nuclear Information System (INIS)

Atkins, W.K.

1983-01-01

The fundamental result of Lanczos is used in a new type of quadratic variational principle whose field equations are the Einstein field equations together with the Yang-Mills type equations for the Riemann curvature. Additionally, a spin-2 theory of gravity for the special case of the Einstein vacuum is discussed

Pyrolysis-gas chromatographic method for kerogen typing

Energy Technology Data Exchange (ETDEWEB)

Larter, S.R.; Douglas, A.G.

1980-01-01

The classification of kerogens according to their type and rank is important for the definition of any kerogen assemblage. Whereas optical methods of rank determination are well known, vitrinite reflectance and spore coloration being the most widely accepted chemical methods for typing kerogens are less developed. In this work we show that pyrograms, produced by pyrolyzing microgram quantities of solvent-extracted kerogens, enable not only their characterization in terms of a chromatographic fingerprint but also the production of a numerical type index determined as the ratio of m(+p)-xylene/n-octene (oct-1-ene) in the pyrogram. This index appears to be a close function of kerogen type. Type 3 kerogens (Tissot et al., 1974), including vitrinite, provide a high type index and have pyrolysates dominated by aromatic and phenolic compounds whereas type 1 kerogens provide an aliphatic-rich pyrolysate and consequently a low type index. The type index described here correlates well with microscopic and elemental analysis data and the pyrogram fingerprint provides an additional level of characterization not attainable with other current typing techniques.

Finite-Temperature Variational Monte Carlo Method for Strongly Correlated Electron Systems

Science.gov (United States)

Takai, Kensaku; Ido, Kota; Misawa, Takahiro; Yamaji, Youhei; Imada, Masatoshi

2016-03-01

A new computational method for finite-temperature properties of strongly correlated electrons is proposed by extending the variational Monte Carlo method originally developed for the ground state. The method is based on the path integral in the imaginary-time formulation, starting from the infinite-temperature state that is well approximated by a small number of certain random initial states. Lower temperatures are progressively reached by the imaginary-time evolution. The algorithm follows the framework of the quantum transfer matrix and finite-temperature Lanczos methods, but we extend them to treat much larger system sizes without the negative sign problem by optimizing the truncated Hilbert space on the basis of the time-dependent variational principle (TDVP). This optimization algorithm is equivalent to the stochastic reconfiguration (SR) method that has been frequently used for the ground state to optimally truncate the Hilbert space. The obtained finite-temperature states allow an interpretation based on the thermal pure quantum (TPQ) state instead of the conventional canonical-ensemble average. Our method is tested for the one- and two-dimensional Hubbard models and its accuracy and efficiency are demonstrated.

Explicit Hilbert-space representations of atomic and molecular photoabsorption spectra: Computational studies of Stieltjes-Tchebycheff functions

International Nuclear Information System (INIS)

Hermann, M.R.; Langhoff, P.W.

1983-01-01

Explicit Hilbert-space techniques are reported for construction of the discrete and continuum Schroedinger states required in atomic and molecular photoexcitation and/or photoionization studies. These developments extend and clarify previously described moment-theory methods for determinations of photoabsorption cross sections from discrete basis-set calculations to include explicit construction of underlying wave functions. The appropriate Stieltjes-Tchebycheff excitation and ionization functions of nth order are defined as Radau-type eigenstates of an appropriate operator in an n-term Cauchy-Lanczos basis. The energies of these states are the Radau quadrature points of the photoabsorption cross section, and their (reciprocal) norms provide the corresponding quadrature weights. Although finite-order Stieltjes-Tchebycheff functions are L 2 integrable, and do not have asymptotic spatial tails in the continuous spectrum, the Radau quadrature weights nevertheless provide information for normalization in the conventional Dirac delta-function sense. Since one Radau point can be placed anywhere in the spectrum, appropriately normalized convergent approximations to any of the discrete or continuum Schroedinger states are obtained from the development. Connections with matrix partitioning methods are established, demonstrating that nth-order Stieltjes-Tchebycheff functions are optical-potential solutions of the matrix Schroedinger equation in the full Cauchy-Lanczos basis

Correlation of zero-point energy with molecular structure and molecular forces. 3. Approximation for H/D isotope shifts and linear frequency sum rule

International Nuclear Information System (INIS)

Oi, T.; Ishida, T.

1984-01-01

The approximation methods for the zero-point energy (ZPE) previously developed using the Lanczo's tau method have been applied to the shifts in ZPE due to hydrogen isotope substitutions. Six types of approximation methods have been compared and analyzed on the basis of a weighing function Ω(lambda) varies as lambda/sup k/ and the actual eigenvalue shift spectra. The method generated by the most general optimzation treatment yields a predictable and generally satisfactory precision of the order of 1% or better. A linear frequency sum rule has been derived, which approximately holds for the sets of isotopic molecules which satisfy the second-order frequency sum rule. 19 references, 3 figures, 3 tables

Various Newton-type iterative methods for solving nonlinear equations

Directory of Open Access Journals (Sweden)

Manoj Kumar

2013-10-01

Full Text Available The aim of the present paper is to introduce and investigate new ninth and seventh order convergent Newton-type iterative methods for solving nonlinear equations. The ninth order convergent Newton-type iterative method is made derivative free to obtain seventh-order convergent Newton-type iterative method. These new with and without derivative methods have efficiency indices 1.5518 and 1.6266, respectively. The error equations are used to establish the order of convergence of these proposed iterative methods. Finally, various numerical comparisons are implemented by MATLAB to demonstrate the performance of the developed methods.

Edge detection methods based on generalized type-2 fuzzy logic

CERN Document Server

Gonzalez, Claudia I; Castro, Juan R; Castillo, Oscar

2017-01-01

In this book four new methods are proposed. In the first method the generalized type-2 fuzzy logic is combined with the morphological gra-dient technique. The second method combines the general type-2 fuzzy systems (GT2 FSs) and the Sobel operator; in the third approach the me-thodology based on Sobel operator and GT2 FSs is improved to be applied on color images. In the fourth approach, we proposed a novel edge detec-tion method where, a digital image is converted a generalized type-2 fuzzy image. In this book it is also included a comparative study of type-1, inter-val type-2 and generalized type-2 fuzzy systems as tools to enhance edge detection in digital images when used in conjunction with the morphologi-cal gradient and the Sobel operator. The proposed generalized type-2 fuzzy edge detection methods were tested with benchmark images and synthetic images, in a grayscale and color format. Another contribution in this book is that the generalized type-2 fuzzy edge detector method is applied in the preproc...

The BR eigenvalue algorithm

Energy Technology Data Exchange (ETDEWEB)

Geist, G.A. [Oak Ridge National Lab., TN (United States). Computer Science and Mathematics Div.; Howell, G.W. [Florida Inst. of Tech., Melbourne, FL (United States). Dept. of Applied Mathematics; Watkins, D.S. [Washington State Univ., Pullman, WA (United States). Dept. of Pure and Applied Mathematics

1997-11-01

The BR algorithm, a new method for calculating the eigenvalues of an upper Hessenberg matrix, is introduced. It is a bulge-chasing algorithm like the QR algorithm, but, unlike the QR algorithm, it is well adapted to computing the eigenvalues of the narrowband, nearly tridiagonal matrices generated by the look-ahead Lanczos process. This paper describes the BR algorithm and gives numerical evidence that it works well in conjunction with the Lanczos process. On the biggest problems run so far, the BR algorithm beats the QR algorithm by a factor of 30--60 in computing time and a factor of over 100 in matrix storage space.

Cutibacterium acnes molecular typing: time to standardize the method.

Science.gov (United States)

Dagnelie, M-A; Khammari, A; Dréno, B; Corvec, S

2018-03-12

The Gram-positive, anaerobic/aerotolerant bacterium Cutibacterium acnes is a commensal of healthy human skin; it is subdivided into six main phylogenetic groups or phylotypes: IA1, IA2, IB, IC, II and III. To decipher how far specific subgroups of C. acnes are involved in disease physiopathology, different molecular typing methods have been developed to identify these subgroups: i.e. phylotypes, clonal complexes, and types defined by single-locus sequence typing (SLST). However, as several molecular typing methods have been developed over the last decade, it has become a difficult task to compare the results from one article to another. Based on the scientific literature, the aim of this narrative review is to propose a standardized method to perform molecular typing of C. acnes, according to the degree of resolution needed (phylotypes, clonal complexes, or SLST types). We discuss the existing different typing methods from a critical point of view, emphasizing their advantages and drawbacks, and we identify the most frequently used methods. We propose a consensus algorithm according to the needed phylogeny resolution level. We first propose to use multiplex PCR for phylotype identification, MLST9 for clonal complex determination, and SLST for phylogeny investigation including numerous isolates. There is an obvious need to create a consensus about molecular typing methods for C. acnes. This standardization will facilitate the comparison of results between one article and another, and also the interpretation of clinical data. Copyright © 2018 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

Physical qualification and improvements of the numerical model of a method of characteristics for the resolution of the neutron transport equation in non-structured grids

International Nuclear Information System (INIS)

Santandrea, Simone

2001-01-01

This research thesis addresses the resolution of the neutron transport equation inside reactor cells in non-structured grids and in general geometry by using the method of characteristics (MoC) and two acceleration methods developed during this research. The author introduces the MoC with a flat approximation of the neutron collision source within each computation area. This formulation leads to a linear approximation. The next part presents the mathematical framework for the use of the Lanczos iterative scheme. A new acceleration method is then introduced. The last part reports realistic cases with a high spatial and angular heterogeneity. Results obtained by using the Apollo2-TDT code are compared with those obtained with the Tripoli4 Monte-Carlo code [fr

Comparison of a newly developed binary typing with ribotyping and multilocus sequence typing methods for Clostridium difficile.

Science.gov (United States)

Li, Zhirong; Liu, Xiaolei; Zhao, Jianhong; Xu, Kaiyue; Tian, Tiantian; Yang, Jing; Qiang, Cuixin; Shi, Dongyan; Wei, Honglian; Sun, Suju; Cui, Qingqing; Li, Ruxin; Niu, Yanan; Huang, Bixing

2018-04-01

Clostridium difficile is the causative pathogen for antibiotic-related nosocomial diarrhea. For epidemiological study and identification of virulent clones, a new binary typing method was developed for C. difficile in this study. The usefulness of this newly developed optimized 10-loci binary typing method was compared with two widely used methods ribotyping and multilocus sequence typing (MLST) in 189 C. difficile samples. The binary typing, ribotyping and MLST typed the samples into 53 binary types (BTs), 26 ribotypes (RTs), and 33 MLST sequence types (STs), respectively. The typing ability of the binary method was better than that of either ribotyping or MLST expressed in Simpson Index (SI) at 0.937, 0.892 and 0.859, respectively. The ease of testing, portability and cost-effectiveness of the new binary typing would make it a useful typing alternative for outbreak investigations within healthcare facilities and epidemiological research. Copyright © 2018 Elsevier B.V. All rights reserved.

Computational Error Estimate for the Power Series Solution of Odes ...

African Journals Online (AJOL)

This paper compares the error estimation of power series solution with recursive Tau method for solving ordinary differential equations. From the computational viewpoint, the power series using zeros of Chebyshevpolunomial is effective, accurate and easy to use. Keywords: Lanczos Tau method, Chebyshev polynomial, ...

The hydrogen tunneling splitting in malonaldehyde: A full-dimensional time-independent quantum mechanical method

Energy Technology Data Exchange (ETDEWEB)

Wu, Feng; Ren, Yinghui; Bian, Wensheng, E-mail: bian@iccas.ac.cn [Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190 (China); University of Chinese Academy of Sciences, Beijing 100049 (China)

2016-08-21

The accurate time-independent quantum dynamics calculations on the ground-state tunneling splitting of malonaldehyde in full dimensionality are reported for the first time. This is achieved with an efficient method developed by us. In our method, the basis functions are customized for the hydrogen transfer process which has the effect of greatly reducing the size of the final Hamiltonian matrix, and the Lanczos method and parallel strategy are used to further overcome the memory and central processing unit time bottlenecks. The obtained ground-state tunneling splitting of 24.5 cm{sup −1} is in excellent agreement with the benchmark value of 23.8 cm{sup −1} computed with the full-dimensional, multi-configurational time-dependent Hartree approach on the same potential energy surface, and we estimate that our reported value has an uncertainty of less than 0.5 cm{sup −1}. Moreover, the role of various vibrational modes strongly coupled to the hydrogen transfer process is revealed.

Harnessing molecular excited states with Lanczos chains

Science.gov (United States)

Baroni, Stefano; Gebauer, Ralph; Bariş Malcioğlu, O.; Saad, Yousef; Umari, Paolo; Xian, Jiawei

2010-02-01

The recursion method of Haydock, Heine and Kelly is a powerful tool for calculating diagonal matrix elements of the resolvent of quantum-mechanical Hamiltonian operators by elegantly expressing them in terms of continued fractions. In this paper we extend the recursion method to off-diagonal matrix elements of general (possibly non-Hermitian) operators and apply it to the simulation of molecular optical absorption and photoemission spectra within time-dependent density-functional and many-body perturbation theories, respectively. This method is demonstrated with a couple of applications to the optical absorption and photoemission spectra of the caffeine molecule.

Harnessing molecular excited states with Lanczos chains

Energy Technology Data Exchange (ETDEWEB)

Baroni, Stefano; Baris Malcioglu, O; Xian Jiawei [SISSA-Scuola Internazionale Superiore di Studi Avanzati, I-34151 Trieste (Italy); Gebauer, Ralph; Umari, Paolo [CNR DEMOCRITOS Theory-Elettra Group, c/o Sincrotrone Trieste, Area Science Park, I-34012 Basovizza, Trieste (Italy); Saad, Yousef [Department of Computer Science and Engineering, University of Minnesota, and Minnesota Supercomputing Institute, Minneapolis, MN 55455 (United States)

2010-02-24

The recursion method of Haydock, Heine and Kelly is a powerful tool for calculating diagonal matrix elements of the resolvent of quantum-mechanical Hamiltonian operators by elegantly expressing them in terms of continued fractions. In this paper we extend the recursion method to off-diagonal matrix elements of general (possibly non-Hermitian) operators and apply it to the simulation of molecular optical absorption and photoemission spectra within time-dependent density-functional and many-body perturbation theories, respectively. This method is demonstrated with a couple of applications to the optical absorption and photoemission spectra of the caffeine molecule.

Harnessing molecular excited states with Lanczos chains.

Science.gov (United States)

Baroni, Stefano; Gebauer, Ralph; Bariş Malcioğlu, O; Saad, Yousef; Umari, Paolo; Xian, Jiawei

2010-02-24

The recursion method of Haydock, Heine and Kelly is a powerful tool for calculating diagonal matrix elements of the resolvent of quantum-mechanical Hamiltonian operators by elegantly expressing them in terms of continued fractions. In this paper we extend the recursion method to off-diagonal matrix elements of general (possibly non-Hermitian) operators and apply it to the simulation of molecular optical absorption and photoemission spectra within time-dependent density-functional and many-body perturbation theories, respectively. This method is demonstrated with a couple of applications to the optical absorption and photoemission spectra of the caffeine molecule.

Harnessing molecular excited states with Lanczos chains

International Nuclear Information System (INIS)

Baroni, Stefano; Baris Malcioglu, O; Xian Jiawei; Gebauer, Ralph; Umari, Paolo; Saad, Yousef

2010-01-01

The recursion method of Haydock, Heine and Kelly is a powerful tool for calculating diagonal matrix elements of the resolvent of quantum-mechanical Hamiltonian operators by elegantly expressing them in terms of continued fractions. In this paper we extend the recursion method to off-diagonal matrix elements of general (possibly non-Hermitian) operators and apply it to the simulation of molecular optical absorption and photoemission spectra within time-dependent density-functional and many-body perturbation theories, respectively. This method is demonstrated with a couple of applications to the optical absorption and photoemission spectra of the caffeine molecule.

Computation of saddle-type slow manifolds using iterative methods

DEFF Research Database (Denmark)

Kristiansen, Kristian Uldall

2015-01-01

with respect to , appropriate estimates are directly attainable using the method of this paper. The method is applied to several examples, including a model for a pair of neurons coupled by reciprocal inhibition with two slow and two fast variables, and the computation of homoclinic connections in the Fitz......This paper presents an alternative approach for the computation of trajectory segments on slow manifolds of saddle type. This approach is based on iterative methods rather than collocation-type methods. Compared to collocation methods, which require mesh refinements to ensure uniform convergence...

Fermion determinants in lattice QCD

International Nuclear Information System (INIS)

Johnson, Christopher Andrew

2001-01-01

The main topic of this thesis concerns efficient algorithms for the calculation of determinants of the kind of matrix typically encountered in lattice QCD. In particular an efficient method for calculating the fermion determinant is described. Such a calculation is useful to illustrate the effects of light dynamical (virtual) quarks. The methods employed in this thesis are stochastic methods, based on the Lanczos algorithm, which is used for the solution of large, sparse matrix problems via a partial tridiagonalisation of the matrix. Here an implementation is explored which requires less exhaustive treatment of the matrix than previous Lanczos methods. This technique exploits the analogy between the Lanczos tridiagonalisation algorithm and Gaussian quadrature in order to calculate the fermion determinant. A technique for determining a number of the eigenvalues of the matrix is also presented. A demonstration is then given of how one can improve upon this estimate considerably using variance reduction techniques, reducing the variance by a factor of order 100 with a further, equal amount of work. The variance reduction method is a two-stage process, involving a Chebyshev approximation to the quantity in question and then the subtraction of traceless operators. The method is applied to the fermion determinant for non-perturbatively improved Wilson fermions on a 16 3 x 32 lattice. It is also applicable to a wider class of matrix operators. Finally we discuss how dynamical quark effects may be simulated in a Monte Carlo process with an effective partitioning of low and high eigenmodes. This may be done via selective updating of a trial configuration which highlights the physically relevant effects of light quark modes. (author)

NLOM - a program for nonlocal optical model calculations

International Nuclear Information System (INIS)

Kim, B.T.; Kyum, M.C.; Hong, S.W.; Park, M.H.; Udagawa, T.

1992-01-01

A FORTRAN program NLOM for nonlocal optical model calculations is described. It is based on a method recently developed by Kim and Udagawa, which utilizes the Lanczos technique for solving integral equations derived from the nonlocal Schroedinger equation. (orig.)

A molecular method for typing Herpes simplex virus isolates as an alternative to immunofluorescence methods

Directory of Open Access Journals (Sweden)

Abraham A

2009-01-01

Full Text Available Background: Typing of Herpes simplex virus (HSV isolates is required to identify the virus isolated in culture. The methods available for this include antigen detection by immunofluorescence (IF assays and polymerase chain reaction (PCR. This study was undertaken to standardize a molecular method for typing of HSV and compare it with a commercial IF reagent for typing. Objectives: To compare a molecular method for typing HSV isolates with a monoclonal antibody (MAb based IF test. Study design : This cross-sectional study utilized four reference strains and 42 HSV isolates obtained from patients between September 1998 and September 2004. These were subjected to testing using an MAb-based IF test and a PCR that detects the polymerase ( pol gene of HSV isolates. Results: The observed agreement of the MAb IF assay with the pol PCR was 95.7%. Fifty four point eight percent (23/42 of isolates tested by IF typing were found to be HSV-1, 40.5% (17/42 were HSV-2, and two (4.8% were untypable using the MAb IF assay. The two untypable isolates were found to be HSV-2 using the pol PCR. In addition, the cost per PCR test for typing is estimated to be around Rs 1,300 (USD 30, whereas the cost per MAb IF test is about Rs 1,500 (USD 35 including all overheads (reagents, instruments, personnel time, and consumables. Conclusion: The pol PCR is a cheaper and more easily reproducible method for typing HSV isolates as compared to the IF test. It could replace the IF-based method for routine typing of HSV isolates as availability of PCR machines (thermal cyclers is now more widespread than fluorescence microscopes in a country like India.

Fine typing of methicillin-resistant Staphylococcus aureus isolates using direct repeat unit and staphylococcal interspersed repeat unit typing methods.

Science.gov (United States)

Ho, Cheng-Mao; Ho, Mao-Wang; Li, Chi-Yuan; Lu, Jang-Jih

2015-08-01

Methicillin-resistant Staphylococcus aureus (MRSA) typing is an important epidemiologic tool for monitoring trends and preventing outbreaks. However, the efficiency of various MRSA typing methods for each SCCmec MRSA isolate is rarely evaluated. A total of 157 MRSA isolates from four different regions in Taiwan were typed with five different molecular methods, including SCCmec typing, multilocus sequence typing (MLST), spa typing, mec-associated direct repeat unit (dru) copy number determination, and staphylococcal interspersed repeat unit (SIRU) profiling. There were four SCCmec types, eight MLST types, 15 spa types, 11 dru types, and 31 SIRU profiles. The most common type determined by each molecular typing method was SCCmec III (115 isolates, 73.2%), ST239 (99 isolates, 63.1%), t037 (107 isolates, 68.2%), 14 dru copies (76 isolates, 48.4%), and SIRU profile 3013722 (102 isolates, 65%), respectively. When using the combination of MLST, spa typing, and dru copy number, ST5-t002-4 (n = 8), ST239-t037-14 (n = 68), ST59-t437-9 (n = 9), and ST59-t437-11 (n = 6) were found to be the most common types of SCCmec types II (n = 9), III (n = 115), IV (n = 21), and VT (n = 11) isolates, respectively. SCCmec type III isolates were further classified into 11 dru types. Of the 21 SCCmec type IV isolates, 14 SIRU profiles were found. Seven SIRU patterns were observed in the 11 SCCmec type VT isolates. Different typing methods showed a similar Hunter-Gaston discrimination index among the 157 MRSA isolates. However, dru and SIRU typing methods had a better discriminatory power for SCCmec type III and SCCmec types IV and VT isolates, respectively, suggesting that dru and SIRU can be used to further type these isolates. Copyright © 2013. Published by Elsevier B.V.

Discriminative power of Campylobacter phenotypic and genotypic typing methods.

Science.gov (United States)

Duarte, Alexandra; Seliwiorstow, Tomasz; Miller, William G; De Zutter, Lieven; Uyttendaele, Mieke; Dierick, Katelijne; Botteldoorn, Nadine

2016-06-01

The aim of this study was to compare different typing methods, individually and combined, for use in the monitoring of Campylobacter in food. Campylobacter jejuni (n=94) and Campylobacter coli (n=52) isolated from different broiler meat carcasses were characterized using multilocus sequence typing (MLST), flagellin gene A restriction fragment length polymorphism typing (flaA-RFLP), antimicrobial resistance profiling (AMRp), the presence/absence of 5 putative virulence genes; and, exclusively for C. jejuni, the determination of lipooligosaccharide (LOS) class. Discriminatory power was calculated by the Simpson's index of diversity (SID) and the congruence was measured by the adjusted Rand index and adjusted Wallace coefficient. MLST was individually the most discriminative typing method for both C. jejuni (SID=0.981) and C. coli (SID=0.957). The most discriminative combination with a SID of 0.992 for both C. jejuni and C. coli was obtained by combining MLST with flaA-RFLP. The combination of MLST with flaA-RFLP is an easy and feasible typing method for short-term monitoring of Campylobacter in broiler meat carcass. Copyright © 2016 Elsevier B.V. All rights reserved.

Model Reduction using Vorobyev Moment Problem

Czech Academy of Sciences Publication Activity Database

Strakoš, Zdeněk

2009-01-01

Roč. 51, č. 3 (2009), s. 363-379 ISSN 1017-1398 R&D Projects: GA AV ČR IAA100300802 Institutional research plan: CEZ:AV0Z10300504 Keywords : matching moments * model reduction * Krylov subspace methods * conjugate gradient method * Lanczos method * Arnoldi method * Gauss-Christoffel quadrature * scattering amplitude Subject RIV: BA - General Mathematics Impact factor: 0.716, year: 2009

Extending the reach of strong-coupling: an iterative technique for Hamiltonian lattice models

International Nuclear Information System (INIS)

Alberty, J.; Greensite, J.; Patkos, A.

1983-12-01

The authors propose an iterative method for doing lattice strong-coupling-like calculations in a range of medium to weak couplings. The method is a modified Lanczos scheme, with greatly improved convergence properties. The technique is tested on the Mathieu equation and on a Hamiltonian finite-chain XY model, with excellent results. (Auth.)

Overview of molecular typing methods for outbreak detection and epidemiological surveillance

OpenAIRE

Sabat, A. J.; Budimir, A.; Nashev, D.; Sa-Leao, R.; van Dijl, J. M.; Laurent, F.; Grundmann, H.; Friedrich, A. W.

2013-01-01

Typing methods for discriminating different bacterial isolates of the same species are essential epidemiological tools in infection prevention and control. Traditional typing systems based on phenotypes, such as serotype, biotype, phage-type, or antibiogram, have been used for many years. However, more recent methods that examine the relatedness of isolates at a molecular level have revolutionised our ability to differentiate among bacterial types and subtypes. Importantly, the development of...

Methods of exploitation of different types of uranium deposits

International Nuclear Information System (INIS)

2000-09-01

Deposits are mined using three broad types of mining methods: open pit, underground and in situ leaching. This publication addresses all aspects of mining and milling methods for several types of deposits and provides information to assist in the selection process of methods and also considers what actions must be taken into account for obtaining regulatory approvals for a project and for final decommissioning and reclamation of a project. The objective of this publication is to provide a process of selections of methods for mining engineers and managers involved in modernising ongoing operations or considering opening new operations. Several practical examples are given. These guidelines can be consulted and used in many countries involved in uranium mining and milling operations. The examples where costs are given can also be adjusted to specific economic conditions of various countries. The authors are from four uranium producing countries. They bring diversified experience for all types of mining and milling operations from tile opening of a mine to the decommissioning of the complete operation

Methods of exploitation of different types of uranium deposits

Energy Technology Data Exchange (ETDEWEB)

NONE

2000-09-01

Deposits are mined using three broad types of mining methods: open pit, underground and in situ leaching. This publication addresses all aspects of mining and milling methods for several types of deposits and provides information to assist in the selection process of methods and also considers what actions must be taken into account for obtaining regulatory approvals for a project and for final decommissioning and reclamation of a project. The objective of this publication is to provide a process of selections of methods for mining engineers and managers involved in modernising ongoing operations or considering opening new operations. Several practical examples are given. These guidelines can be consulted and used in many countries involved in uranium mining and milling operations. The examples where costs are given can also be adjusted to specific economic conditions of various countries. The authors are from four uranium producing countries. They bring diversified experience for all types of mining and milling operations from tile opening of a mine to the decommissioning of the complete operation.

On Numerical Stability in Large Scale Linear Algebraic Computations

Czech Academy of Sciences Publication Activity Database

Strakoš, Zdeněk; Liesen, J.

2005-01-01

Roč. 85, č. 5 (2005), s. 307-325 ISSN 0044-2267 R&D Projects: GA AV ČR 1ET400300415 Institutional research plan: CEZ:AV0Z10300504 Keywords : linear algebraic systems * eigenvalue problems * convergence * numerical stability * backward error * accuracy * Lanczos method * conjugate gradient method * GMRES method Subject RIV: BA - General Mathematics Impact factor: 0.351, year: 2005

Systematization of types and methods of radiation therapy methods and techniques of irradiation of patients

International Nuclear Information System (INIS)

Vajnberg, M.Sh.

1991-01-01

The paper is concerned with the principles of systematization and classification of types and methods of radiation therapy, approaches to the regulation of its terminology. They are based on the distinction of the concepts of radiation therapy and irradiation of patients. The author gives a consice historical review of improvement of the methodology of radiation therapy in the course of developing of its methods and facilities. Problems of terminology are under discussion. There is a table of types and methods of radiation therapy, methods and techniques of irradiation. In the appendices one can find a table of typical legends and examples of graphic signs to denote methods of irradiation. Potentialities of a practical use of the system are described

Linear–Quadratic Mean-Field-Type Games: A Direct Method

Directory of Open Access Journals (Sweden)

Tyrone E. Duncan

2018-02-01

Full Text Available In this work, a multi-person mean-field-type game is formulated and solved that is described by a linear jump-diffusion system of mean-field type and a quadratic cost functional involving the second moments, the square of the expected value of the state, and the control actions of all decision-makers. We propose a direct method to solve the game, team, and bargaining problems. This solution approach does not require solving the Bellman–Kolmogorov equations or backward–forward stochastic differential equations of Pontryagin’s type. The proposed method can be easily implemented by beginners and engineers who are new to the emerging field of mean-field-type game theory. The optimal strategies for decision-makers are shown to be in a state-and-mean-field feedback form. The optimal strategies are given explicitly as a sum of the well-known linear state-feedback strategy for the associated deterministic linear–quadratic game problem and a mean-field feedback term. The equilibrium cost of the decision-makers are explicitly derived using a simple direct method. Moreover, the equilibrium cost is a weighted sum of the initial variance and an integral of a weighted variance of the diffusion and the jump process. Finally, the method is used to compute global optimum strategies as well as saddle point strategies and Nash bargaining solution in state-and-mean-field feedback form.

Journal of Earth System Science | Indian Academy of Sciences

Indian Academy of Sciences (India)

Determining the optimum cell size of digital elevation model for hydrologic ... Efficient two-dimensional magnetotellurics modelling using implicitly restarted Lanczos method ... A small isolated mafic body occurs to the south of Sirohi near village Daba .... Carbon isotopic composition of fossil leaves from the Early Cretaceous ...

Pyrosequencing™ : A one-step method for high resolution HLA typing

Directory of Open Access Journals (Sweden)

Marincola Francesco M

2003-11-01

Full Text Available Abstract While the use of high-resolution molecular typing in routine matching of human leukocyte antigens (HLA is expected to improve unrelated donor selection and transplant outcome, the genetic complexity of HLA still makes the current methodology limited and laborious. Pyrosequencing™ is a gel-free, sequencing-by-synthesis method. In a Pyrosequencing reaction, nucleotide incorporation proceeds sequentially along each DNA template at a given nucleotide dispensation order (NDO that is programmed into a pyrosequencer. Here we describe the design of a NDO that generates a pyrogram unique for any given allele or combination of alleles. We present examples of unique pyrograms generated from each of two heterozygous HLA templates, which would otherwise remain cis/trans ambiguous using standard sequencing based typing (SBT method. In addition, we display representative data that demonstrate long read and linear signal generation. These features are prerequisite of high-resolution typing and automated data analysis. In conclusion Pyrosequencing is a one-step method for high resolution DNA typing.

A new method for identifying the types of organic matter

International Nuclear Information System (INIS)

Tong Chunhan; Li Guodong

1991-01-01

A new method for dividing the types of organic matter according to V and Ni contents in soluble organic matter determined by NAA is introduced. The research site was an oil-gas field in northeastern China. The type of organic matter is an important parameter in evaluating an oil or a gas field. The conventional organic geochemistry methods will meet unsurmountable difficulties when the maturity of organic matter is high. The method described in this paper can solve the problem. (author) 4 refs.; 1 fig.; 2 tabs

Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains.

Science.gov (United States)

Rodriguez, Marcela; Hogan, Patrick G; Satola, Sarah W; Crispell, Emily; Wylie, Todd; Gao, Hongyu; Sodergren, Erica; Weinstock, George M; Burnham, Carey-Ann D; Fritz, Stephanie A

2015-09-01

Historically, a number of typing methods have been evaluated for Staphylococcus aureus strain characterization. The emergence of contemporary strains of community-associated S. aureus, and the ensuing epidemic with a predominant strain type (USA300), necessitates re-evaluation of the discriminatory power of these typing methods for discerning molecular epidemiology and transmission dynamics, essential to investigations of hospital and community outbreaks. We compared the discriminatory index of 5 typing methods for contemporary S. aureus strain characterization. Children presenting to St. Louis Children's Hospital and community pediatric practices in St. Louis, Missouri (MO), with community-associated S. aureus infections were enrolled. Repetitive sequence-based PCR (repPCR), pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), staphylococcal protein A (spa), and staphylococcal cassette chromosome (SCC) mec typing were performed on 200 S. aureus isolates. The discriminatory index of each method was calculated using the standard formula for this metric, where a value of 1 is highly discriminatory and a value of 0 is not discriminatory. Overall, we identified 26 distinct strain types by repPCR, 17 strain types by PFGE, 30 strain types by MLST, 68 strain types by spa typing, and 5 strain types by SCCmec typing. RepPCR had the highest discriminatory index (D) of all methods (D = 0.88), followed by spa typing (D = 0.87), MLST (D = 0.84), PFGE (D = 0.76), and SCCmec typing (D = 0.60). The method with the highest D among MRSA isolates was repPCR (D = 0.64) followed by spa typing (D = 0.45) and MLST (D = 0.44). The method with the highest D among MSSA isolates was spa typing (D = 0.98), followed by MLST (D = 0.93), repPCR (D = 0.92), and PFGE (D = 0.89). Among isolates designated USA300 by PFGE, repPCR was most discriminatory, with 10 distinct strain types identified (D = 0.63). We identified 45

Spectral Analysis of Large Finite Element Problems by Optimization Methods

Directory of Open Access Journals (Sweden)

Luca Bergamaschi

1994-01-01

Full Text Available Recently an efficient method for the solution of the partial symmetric eigenproblem (DACG, deflated-accelerated conjugate gradient was developed, based on the conjugate gradient (CG minimization of successive Rayleigh quotients over deflated subspaces of decreasing size. In this article four different choices of the coefficient βk required at each DACG iteration for the computation of the new search direction Pk are discussed. The “optimal” choice is the one that yields the same asymptotic convergence rate as the CG scheme applied to the solution of linear systems. Numerical results point out that the optimal βk leads to a very cost effective algorithm in terms of CPU time in all the sample problems presented. Various preconditioners are also analyzed. It is found that DACG using the optimal βk and (LLT−1 as a preconditioner, L being the incomplete Cholesky factor of A, proves a very promising method for the partial eigensolution. It appears to be superior to the Lanczos method in the evaluation of the 40 leftmost eigenpairs of five finite element problems, and particularly for the largest problem, with size equal to 4560, for which the speed gain turns out to fall between 2.5 and 6.0, depending on the eigenpair level.

Miscellaneous subjects, ch. 18

International Nuclear Information System (INIS)

Brussaard, P.J.; Glaudemans, P.W.M.

1977-01-01

Attention is paid to a variery of subjects which are related to shell model applications, e.g. the Lanczos method for matrix diagonalization, truncation methods (seniority truncation, single-particle energy truncation and diagonal energy truncation which can be used for reducing the configuration space.) Coulomb energies and spurious states are briefly discussed. Finally attention is paid to the particle-vibrator model

Solving the interval type-2 fuzzy polynomial equation using the ranking method

Science.gov (United States)

Rahman, Nurhakimah Ab.; Abdullah, Lazim

2014-07-01

Polynomial equations with trapezoidal and triangular fuzzy numbers have attracted some interest among researchers in mathematics, engineering and social sciences. There are some methods that have been developed in order to solve these equations. In this study we are interested in introducing the interval type-2 fuzzy polynomial equation and solving it using the ranking method of fuzzy numbers. The ranking method concept was firstly proposed to find real roots of fuzzy polynomial equation. Therefore, the ranking method is applied to find real roots of the interval type-2 fuzzy polynomial equation. We transform the interval type-2 fuzzy polynomial equation to a system of crisp interval type-2 fuzzy polynomial equation. This transformation is performed using the ranking method of fuzzy numbers based on three parameters, namely value, ambiguity and fuzziness. Finally, we illustrate our approach by numerical example.

On the properties of torsions in Riemann-Cartan space-times

International Nuclear Information System (INIS)

Baker, W.M.; Atkins, W.K.; Davis, W.R.

1978-01-01

This paper is the first paper in a series of three papers dealing with the physical properties of torsions in Riemann-Cartan space-times (U 4 ). Paper one deals with the particular types of torsion that can be associated with the U 4 reinterpretation of a special class of null electromagnetic solutions of the standard form of Einstein's equations. In particular, for plane null electromagnetic solutions, three types of torsion solutions are associated with this type of reinterpretation. Two of these solutions, the trivector and semi-symmetric torsions, although rather special, serve as examples of what could be done to find the associated torsions in terms of simple requirements on identities in U 4 . The third class is obtained by relating the contorsion to the Lanczos ''spin'' tensor. Paper two, dealing with gravitational radiation, provides the proper background relating to the physical significance of the Lanczos tensor. This series of papers is primarily concerned with the question of the possible physical role of all types of torsion, compatible with an extension or an U 4 reinterpretation of Einstein's theory, consistent with the broadest possible interpretation of the present form of the Einstein-Cartan-Sciama-Kibble theory. However, in paper three some consideration will be given on theories with simpler metrical generalizations of U 4 and the related types of torsion. We emphasize that the content of paper one and two should be viewed mainly as special formal results that introduce the more general considerations of paper three

Overview of molecular typing methods for outbreak detection and epidemiological surveillance

NARCIS (Netherlands)

Sabat, A. J.; Budimir, A.; Nashev, D.; Sa-Leao, R.; van Dijl, J. M.; Laurent, F.; Grundmann, H.; Friedrich, A. W.

2013-01-01

Typing methods for discriminating different bacterial isolates of the same species are essential epidemiological tools in infection prevention and control. Traditional typing systems based on phenotypes, such as serotype, biotype, phage-type, or antibiogram, have been used for many years. However,

Improvement of the Owner Distinction Method for Healing-Type Pet Robots

Science.gov (United States)

Nambo, Hidetaka; Kimura, Haruhiko; Hara, Mirai; Abe, Koji; Tajima, Takuya

In order to decrease human stress, Animal Assisted Therapy which applies pets to heal humans is attracted. However, since animals are insanitary and unsafe, it is difficult to practically apply animal pets in hospitals. For the reason, on behalf of animal pets, pet robots have been attracted. Since pet robots would have no problems in sanitation and safety, they are able to be applied as a substitute for animal pets in the therapy. In our previous study where pet robots distinguish their owners like an animal pet, we used a puppet type pet robot which has pressure type touch sensors. However, the accuracy of our method was not sufficient to practical use. In this paper, we propose a method to improve the accuracy of the distinction. The proposed method can be applied for capacitive touch sensors such as installed in AIBO in addition to pressure type touch sensors. Besides, this paper shows performance of the proposed method from experimental results and confirms the proposed method has improved performance of the distinction in the conventional method.

Parallel implementation and performance optimization of the configuration-interaction method

Energy Technology Data Exchange (ETDEWEB)

Shan, H; Williams, S; Johnson, C; McElvain, K; Ormand, WE

2015-11-20

The configuration-interaction (CI) method, long a popular approach to describe quantum many-body systems, is cast as a very large sparse matrix eigenpair problem with matrices whose dimension can exceed one billion. Such formulations place high demands on memory capacity and memory bandwidth - - two quantities at a premium today. In this paper, we describe an efficient, scalable implementation, BIGSTICK, which, by factorizing both the basis and the interaction into two levels, can reconstruct the nonzero matrix elements on the fly, reduce the memory requirements by one or two orders of magnitude, and enable researchers to trade reduced resources for increased computational time. We optimize BIGSTICK on two leading HPC platforms - - the Cray XC30 and the IBM Blue Gene/Q. Specifically, we not only develop an empirically-driven load balancing strategy that can evenly distribute the matrix-vector multiplication across 256K threads, we also developed techniques that improve the performance of the Lanczos reorthogonalization. Combined, these optimizations improved performance by 1.3-8× depending on platform and configuration.

Hypoplastic thumb type IIIB: An alternative method for surgical repair

Directory of Open Access Journals (Sweden)

Salih Onur Basat

2014-08-01

Full Text Available Hypoplastic thumb is the second most common congenital deformity of the thumb. Thumb hypoplasia is characterized by diminished thumb size, metacarpal adduction, metacarpophalangeal joint instability, and thenar muscle hypoplasia. In the literature, different classification types of hypoplastic thumb have been used and different treatment methods described. In this case we presented an alternative palliative treatment method for a ten-year-old patient with modified Blauth's classification type IIIB hypoplastic thumb and one-year follow-up results. [Hand Microsurg 2014; 3(2.000: 59-61

Operating method of molten carbonate type fuel cell

Energy Technology Data Exchange (ETDEWEB)

Nakanishi, Tsuneo

1988-12-06

Molten carbonate type fuel cell involves a problem of oxidation of anode while the unit is stopped. Although there is a method proposed wherein an inactive gas is supplied to anode during the stoppage, the market-available inactive gas contains a slight amount of oxygen which makes it difficult to prevent the deterioration of the anode. In this invention, at the start and the stop other than the normal operation, a protective gas mixture of an inactive gas with a small amount of hydrogen is supplied to the anode. The inactive gas is a commercial type nitrogen, argon or helium; hydrogen is mixed in amount 0.5 - 2.0% of the inactive gas. By this method, oxygen in air which comes in from the gas-sealed portion of the cell is reduced by hydrogen in the protective gas and is discharged in the form of water. 2 figs.

Designing multiplex PCR system of Campylobacter jejuni for efficient typing by improving monoplex PCR binary typing method.

Science.gov (United States)

Yamada, Kazuhiro; Ibata, Ami; Suzuki, Masahiro; Matsumoto, Masakado; Yamashita, Teruo; Minagawa, Hiroko; Kurane, Ryuichiro

2015-01-01

Campylobacter jejuni is responsible for the majority of Campylobacter infections. As the molecular epidemiological study of outbreaks, pulsed-field gel electrophoresis (PFGE) is performed in general. But PFGE has several problems. PCR binary typing (P-BIT) method is a typing method for Campylobacter spp. that was recently developed, and was reported to have a similar discriminatory power and stability to those of PFGE. We modified the P-BIT method from 18 monoplex PCRs to two multiplex PCR systems (mP-BIT). The same results were obtained from monoplex PCRs using original primers and multiplex PCR in the representative isolates. The mP-BIT can analyze 48 strains at a time by using 96-well PCR systems and can identify C. jejuni because mP-BIT includes C. jejuni marker. The typing of the isolates by the mP-BIT and PFGE demonstrated generally concordant results and the mP-BIT method (D = 0.980) has a similar discriminatory power to that of PFGE with SmaI digest (D = 0.975) or KpnI digest (D = 0.987) as with original article. The mP-BIT method is quick, simple and easy, and comes to be able to perform it at low cost by having become a multiplex PCR system. Therefore, the mP-BIT method with two multiplex PCR systems has high potential for a rapid first-line surveillance typing assay of C. jejuni and can be used for routine surveillance and outbreak investigations of C. jejuni in the future. Copyright © 2014 Japanese Society of Chemotherapy and The Japanese Association for Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

Method of operating FBR type reactors

International Nuclear Information System (INIS)

Arie, Kazuo.

1984-01-01

Purpose: To secure the controlling performance and the safety of FBR type reactors by decreasing the amount of deformation due to the difference in the heat expansion of a control rod guide tube. Method: The reactor is operated while disposing reactor core fuel assemblies of a same power at point-to-point symmetrical positions relative to the axial center for the control rod assembly. This can eliminate the temperature difference between opposing surfaces of the control rod guide tube and eliminate the difference in the thermal expansion. (Yoshino, Y.)

Integration of rock typing methods for carbonate reservoir characterization

International Nuclear Information System (INIS)

Aliakbardoust, E; Rahimpour-Bonab, H

2013-01-01

Reservoir rock typing is the most important part of all reservoir modelling. For integrated reservoir rock typing, static and dynamic properties need to be combined, but sometimes these two are incompatible. The failure is due to the misunderstanding of the crucial parameters that control the dynamic behaviour of the reservoir rock and thus selecting inappropriate methods for defining static rock types. In this study, rock types were defined by combining the SCAL data with the rock properties, particularly rock fabric and pore types. First, air-displacing-water capillary pressure curues were classified because they are representative of fluid saturation and behaviour under capillary forces. Next the most important rock properties which control the fluid flow and saturation behaviour (rock fabric and pore types) were combined with defined classes. Corresponding petrophysical properties were also attributed to reservoir rock types and eventually, defined rock types were compared with relative permeability curves. This study focused on representing the importance of the pore system, specifically pore types in fluid saturation and entrapment in the reservoir rock. The most common tests in static rock typing, such as electrofacies analysis and porosity–permeability correlation, were carried out and the results indicate that these are not appropriate approaches for reservoir rock typing in carbonate reservoirs with a complicated pore system. (paper)

Method for identifying type I diabetes mellitus in humans

Science.gov (United States)

Metz, Thomas O [Kennewick, WA; Qian, Weijun [Richland, WA; Jacobs, Jon M [Pasco, WA; Smith, Richard D [Richland, WA

2011-04-12

A method and system for classifying subject populations utilizing predictive and diagnostic biomarkers for type I diabetes mellitus. The method including determining the levels of a variety of markers within the serum or plasma of a target organism and correlating this level to general populations as a screen for predisposition or progressive monitoring of disease presence or predisposition.

Pyroprinting: a rapid and flexible genotypic fingerprinting method for typing bacterial strains.

Science.gov (United States)

Black, Michael W; VanderKelen, Jennifer; Montana, Aldrin; Dekhtyar, Alexander; Neal, Emily; Goodman, Anya; Kitts, Christopher L

2014-10-01

Bacterial strain typing is commonly employed in studies involving epidemiology, population ecology, and microbial source tracking to identify sources of fecal contamination. Methods for differentiating strains generally use either a collection of phenotypic traits or rely on some interrogation of the bacterial genotype. This report introduces pyroprinting, a novel genotypic strain typing method that is rapid, inexpensive, and discriminating compared to the most sensitive methods already in use. Pyroprinting relies on the simultaneous pyrosequencing of polymorphic multicopy loci, such as the intergenic transcribed spacer regions of rRNA operons in bacterial genomes. Data generated by sequencing combinations of variable templates are reproducible and intrinsically digitized. The theory and development of pyroprinting in Escherichia coli, including the selection of similarity thresholds to define matches between isolates, are presented. The pyroprint-based strain differentiation limits and phylogenetic relevance compared to other typing methods are also explored. Pyroprinting is unique in its simplicity and, paradoxically, in its intrinsic complexity. This new approach serves as an excellent alternative to more cumbersome or less phylogenetically relevant strain typing methods. Copyright © 2014 Elsevier B.V. All rights reserved.

A Generalized Lanczos-QR Technique for Structural Analysis

DEFF Research Database (Denmark)

Vissing, S.

systems with very special properties. Due to the finite discretization the matrices are sparse and a relatively large number of problems also has real and symmetric matrices. The matrix equation for an undamped vibration contains two matrices describing tangent stiffness and mass distributions......Within the field of solid mechanics such as structural dynamics and linearized as well as non-linear stability, the eigenvalue problem plays an important role. In the class of finite element and finite difference discretized problems these engineering problems are characterized by large matrix....... Alternatively, in a stability analysis, tangent stiffness and geometric stiffness matrices are introduced into an eigenvalue problem used to determine possible bifurcation points. The common basis for these types of problems is that the matrix equation describing the problem contains two real, symmetric...

Comparison results on preconditioned SOR-type iterative method for Z-matrices linear systems

Science.gov (United States)

Wang, Xue-Zhong; Huang, Ting-Zhu; Fu, Ying-Ding

2007-09-01

In this paper, we present some comparison theorems on preconditioned iterative method for solving Z-matrices linear systems, Comparison results show that the rate of convergence of the Gauss-Seidel-type method is faster than the rate of convergence of the SOR-type iterative method.

Friedel oscillations in one-dimensional metals: From Luttinger's theorem to the Luttinger liquid

International Nuclear Information System (INIS)

Vieira, Daniel; Freire, Henrique J.P.; Campo, V.L.; Capelle, K.

2008-01-01

Charge density and magnetization density profiles of one-dimensional metals are investigated by two complementary many-body methods: numerically exact (Lanczos) diagonalization, and the Bethe-Ansatz local-density approximation with and without a simple self-interaction correction. Depending on the magnetization of the system, local approximations reproduce different Fourier components of the exact Friedel oscillations

Solution of large nonlinear time-dependent problems using reduced coordinates

International Nuclear Information System (INIS)

Mish, K.D.

1987-01-01

This research is concerned with the idea of reducing a large time-dependent problem, such as one obtained from a finite-element discretization, down to a more manageable size while preserving the most-important physical behavior of the solution. This reduction process is motivated by the concept of a projection operator on a Hilbert Space, and leads to the Lanczos Algorithm for generation of approximate eigenvectors of a large symmetric matrix. The Lanczos Algorithm is then used to develop a reduced form of the spatial component of a time-dependent problem. The solution of the remaining temporal part of the problem is considered from the standpoint of numerical-integration schemes in the time domain. All of these theoretical results are combined to motivate the proposed reduced coordinate algorithm. This algorithm is then developed, discussed, and compared to related methods from the mechanics literature. The proposed reduced coordinate method is then applied to the solution of some representative problems in mechanics. The results of these problems are discussed, conclusions are drawn, and suggestions are made for related future research

A study of block algorithms for fermion matrix inversion

International Nuclear Information System (INIS)

Henty, D.

1990-01-01

We compare the convergence properties of Lanczos and Conjugate Gradient algorithms applied to the calculation of columns of the inverse fermion matrix for Kogut-Susskind and Wilson fermions in lattice QCD. When several columns of the inverse are required simultaneously, a block version of the Lanczos algorithm is most efficient at small mass, being over 5 times faster than the single algorithms. The block algorithm is also less susceptible to critical slowing down. (orig.)

Analytical methods applied to diverse types of Brazilian propolis

Directory of Open Access Journals (Sweden)

Marcucci Maria

2011-06-01

Full Text Available Abstract Propolis is a bee product, composed mainly of plant resins and beeswax, therefore its chemical composition varies due to the geographic and plant origins of these resins, as well as the species of bee. Brazil is an important supplier of propolis on the world market and, although green colored propolis from the southeast is the most known and studied, several other types of propolis from Apis mellifera and native stingless bees (also called cerumen can be found. Propolis is usually consumed as an extract, so the type of solvent and extractive procedures employed further affect its composition. Methods used for the extraction; analysis the percentage of resins, wax and insoluble material in crude propolis; determination of phenolic, flavonoid, amino acid and heavy metal contents are reviewed herein. Different chromatographic methods applied to the separation, identification and quantification of Brazilian propolis components and their relative strengths are discussed; as well as direct insertion mass spectrometry fingerprinting. Propolis has been used as a popular remedy for several centuries for a wide array of ailments. Its antimicrobial properties, present in propolis from different origins, have been extensively studied. But, more recently, anti-parasitic, anti-viral/immune stimulating, healing, anti-tumor, anti-inflammatory, antioxidant and analgesic activities of diverse types of Brazilian propolis have been evaluated. The most common methods employed and overviews of their relative results are presented.

Solutions of interval type-2 fuzzy polynomials using a new ranking method

Science.gov (United States)

Rahman, Nurhakimah Ab.; Abdullah, Lazim; Ghani, Ahmad Termimi Ab.; Ahmad, Noor'Ani

2015-10-01

A few years ago, a ranking method have been introduced in the fuzzy polynomial equations. Concept of the ranking method is proposed to find actual roots of fuzzy polynomials (if exists). Fuzzy polynomials are transformed to system of crisp polynomials, performed by using ranking method based on three parameters namely, Value, Ambiguity and Fuzziness. However, it was found that solutions based on these three parameters are quite inefficient to produce answers. Therefore in this study a new ranking method have been developed with the aim to overcome the inherent weakness. The new ranking method which have four parameters are then applied in the interval type-2 fuzzy polynomials, covering the interval type-2 of fuzzy polynomial equation, dual fuzzy polynomial equations and system of fuzzy polynomials. The efficiency of the new ranking method then numerically considered in the triangular fuzzy numbers and the trapezoidal fuzzy numbers. Finally, the approximate solutions produced from the numerical examples indicate that the new ranking method successfully produced actual roots for the interval type-2 fuzzy polynomials.

Current Methods in the Molecular Typing of Mycobacterium tuberculosis and Other Mycobacteria

Science.gov (United States)

van Ingen, Jakko; Dziadek, Jarosław; Mazur, Paweł K.; Bielecki, Jacek

2014-01-01

In the epidemiology of tuberculosis (TB) and nontuberculous mycobacterial (NTM) diseases, as in all infectious diseases, the key issue is to define the source of infection and to disclose its routes of transmission and dissemination in the environment. For this to be accomplished, the ability of discerning and tracking individual Mycobacterium strains is of critical importance. Molecular typing methods have greatly improved our understanding of the biology of mycobacteria and provide powerful tools to combat the diseases caused by these pathogens. The utility of various typing methods depends on the Mycobacterium species under investigation as well as on the research question. For tuberculosis, different methods have different roles in phylogenetic analyses and person-to-person transmission studies. In NTM diseases, most investigations involve the search for environmental sources or phylogenetic relationships. Here, too, the type of setting determines which methodology is most suitable. Within this review, we summarize currently available molecular methods for strain typing of M. tuberculosis and some NTM species, most commonly associated with human disease. For the various methods, technical practicalities as well as discriminatory power and accomplishments are reviewed. PMID:24527454

Iterative Runge–Kutta-type methods for nonlinear ill-posed problems

International Nuclear Information System (INIS)

Böckmann, C; Pornsawad, P

2008-01-01

We present a regularization method for solving nonlinear ill-posed problems by applying the family of Runge–Kutta methods to an initial value problem, in particular, to the asymptotical regularization method. We prove that the developed iterative regularization method converges to a solution under certain conditions and with a general stopping rule. Some particular iterative regularization methods are numerically implemented. Numerical results of the examples show that the developed Runge–Kutta-type regularization methods yield stable solutions and that particular implicit methods are very efficient in saving iteration steps

Seismic verification methods for structures and equipment of VVER-type and RBMK-type NPPs (summary of experiences)

International Nuclear Information System (INIS)

Masopust, R.

2003-01-01

The main verification methods for structures and equipment of already existing VVER-type and RBMK-type NPPs are briefly described. The following aspects are discussed: fundamental seismic safety assessment principles for VVER/RBMK-type NPPs (seismic safety assessment procedure, typical work plan for seismic safety assessment of existing NPPs, SMA (HCLPF) calculations, modified GIP (GIP-VVER) procedure, similarity of VVER/RBMK equipment to that included in the SQUG databases and seismic interactions

Evaluation of simplified dna extraction methods for EMM typing of group a streptococci

Directory of Open Access Journals (Sweden)

Jose JJM

2006-01-01

Full Text Available Simplified methods of DNA extraction for amplification and sequencing for emm typing of group A streptococci (GAS can save valuable time and cost in resource crunch situations. To evaluate this, we compared two methods of DNA extraction directly from colonies with the standard CDC cell lysate method for emm typing of 50 GAS strains isolated from children with pharyngitis and impetigo. For this, GAS colonies were transferred into two sets of PCR tubes. One set was preheated at 94oC for two minutes in the thermal cycler and cooled while the other set was frozen overnight at -20oC and then thawed before adding the PCR mix. For the cell lysate method, cells were treated with mutanolysin and hyaluronidase before heating at 100oC for 10 minutes and cooling immediately as recommended in the CDC method. All 50 strains could be typed by sequencing the hyper variable region of the emm gene after amplification. The quality of sequences and the emm types identified were also identical. Our study shows that the two simplified DNA extraction methods directly from colonies can conveniently be used for typing a large number of GAS strains easily in relatively short time.

Fast and robust methods for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2

DEFF Research Database (Denmark)

Kvisgaard, Lise Kirstine; Hjulsager, Charlotte Kristiane; Fahnøe, Ulrik

. In the present study, fast and robust methods for long range RT-PCR amplification and subsequent next generation sequencing (NGS) of PRRSV Type 1 and Type 2 viruses were developed and validated on nine Type 1 and nine Type 2 PRRSV viruses. The methods were shown to generate robust and reliable sequences both...... on primary material and cell culture adapted viruses and the protocols were shown to perform well on all three NGS platforms tested (Roche 454 FLX, Illumina HiSeq 2000, and Ion Torrent PGM™ Sequencer). To complete the sequences at the 5’ end, 5’ Rapid Amplification of cDNA Ends (5’ RACE) was conducted...... followed by cycle sequencing of clones. The genome lengths were determined to be 14,876-15,098 and 15,342-15,408 nucleotides long for the Type 1 and Type 2 strains, respectively. These methods will greatly facilitate the generation of more complete genome PRRSV sequences globally which in turn may lead...

Method of removing deterioration product in hydrocarbon type solvent

International Nuclear Information System (INIS)

Ito, Yoshifumi; Takashina, Toru; Murasawa, Kenji.

1988-01-01

Purpose: To remarkably reduce radioactive wastes by bringing adsorbents comprising titanium oxide and/or zirconium oxide into contact with hydrocarbon type solvents. Method: In a nuclear fuel re-processing step, an appropriate processing is applied to extraction solvents suffering from radioactive degradation, to separate the hydrocarbon solvents and store them in a solvent tank. Then, titanium oxide and/or zirconium oxide adsorbents are continuously mixed and agitated therewith to adsorb degradation products on the adsorbents. Then, they are introduced with adsorbent separators to recover purified hydrocarbon type solvents. Meanwhile, the separated adsorbents are discharged from pipeways. This enables to regenerate the hydrocarbon type solvents for reuse, as well as remarkably reduce the radioactive wastes. (Takahashi, M.)

Preconditioned iterations to calculate extreme eigenvalues

Energy Technology Data Exchange (ETDEWEB)

Brand, C.W.; Petrova, S. [Institut fuer Angewandte Mathematik, Leoben (Austria)

1994-12-31

Common iterative algorithms to calculate a few extreme eigenvalues of a large, sparse matrix are Lanczos methods or power iterations. They converge at a rate proportional to the separation of the extreme eigenvalues from the rest of the spectrum. Appropriate preconditioning improves the separation of the eigenvalues. Davidson`s method and its generalizations exploit this fact. The authors examine a preconditioned iteration that resembles a truncated version of Davidson`s method with a different preconditioning strategy.

Typing methods for the plague pathogen, Yersinia pestis.

Science.gov (United States)

Lindler, Luther E

2009-01-01

Phenotypic and genotypic methodologies have been used to differentiate the etiological agent of plague, Yersinia pestis. Historically, phenotypic methods were used to place isolates into one of three biovars based on nitrate reduction and glycerol fermentation. Classification of Y. pestis into genetic subtypes is problematic due to the relative monomorphic nature of the pathogen. Resolution into groups is dependent on the number and types of loci used in the analysis. The last 5-10 years of research and analysis in the field of Y. pestis genotyping have resulted in a recognition by Western scientists that two basic types of Y. pestis exist. One type, considered to be classic strains that are able to cause human plague transmitted by the normal flea vector, is termed epidemic strains. The other type does not typically cause human infections by normal routes of infection, but is virulent for rodents and is termed endemic strains. Previous classification schemes used outside the Western hemisphere referred to these latter strains as Pestoides varieties of Y. pestis. Recent molecular analysis has definitely shown that both endemic and epidemic strains arose independently from a common Yersinia pseudotuberculosis ancestor. Currently, 11 major groups of Y. pestis are defined globally.

Typing of Y chromosome SNPs with multiplex PCR methods

DEFF Research Database (Denmark)

Sanchez Sanchez, Juan Jose; Børsting, Claus; Morling, Niels

2005-01-01

We describe a method for the simultaneous typing of Y-chromosome single nucleotide polymorphism (SNP) markers by means of multiplex polymerase chain reaction (PCR) strategies that allow the detection of 35 Y chromosome SNPs on 25 amplicons from 100 to 200 pg of chromosomal deoxyribonucleic acid...... factors for the creation of larger SNP typing PCR multiplexes include careful selection of primers for the primary amplification and the SBE reaction, use of DNA primers with homogenous composition, and balancing the primer concentrations for both the amplification and the SBE reactions....

The contour deformation method in momentum space and effective interactions for weakly bound nuclei

International Nuclear Information System (INIS)

Hagen, Gaute

2005-01-01

the study of loosely bound and unbound nuclei along the drip lines. The main ingredient in the Gamow Shell Model is the construction of a complete set of many-body Slater determinants built up from a single-particle Berggren basis. It has been shown in this work that a viable starting point in Gamow Shell Model studies is to obtain a single-particle basis by the Contour Deformation Method in momentum space. The results displayed in Paper 2 indicate rapid convergence for many-body resonances using a single-particle basis in momentum space. The challenge for present and future Gamow Shell Model calculations is how to deal with the extreme growth of the number of Slater determinants in the many-body expansion basis. This topic was the main issue of the second part of the thesis. The basic idea was to modify standard effective interaction theory and many-body perturbation theory, so that that their range of applicability encompass the complex interactions and matrices which follow from the generalization of the standard Shell Model to the complex energy plane. Further, the extreme dimension of the Shell Model Hamiltonian matrix requires development of large-scale matrix diagonalization routines which can handle both real and complex matrices. In this thesis it was shown how the Lanczos iteration method may be generalized to complex energy matrices. It was further shown, that by choosing a reasonable initial Lanczos vector for the Oth order multi-particle resonance; the multi- particle resonance may be unambiguously picked out from the set of states obtained from diagonalization at each iteration, by identifying the state which has the largest overlap with the Oth order Lanczos vector. Another important result was the generalization of the Lee-Suzuki similarity transformation to include complex interactions. The emphasis was on the derivation of effective interactions for loosely bound or unbound nuclei which have a strong coupling with the continuum. We demonstrated by a

Large-basis shell-model technology in nucleosynthesis and cosmology

International Nuclear Information System (INIS)

Mathews, G.J.; Bloom, S.D.; Takahashi, K.; Fuller, G.M.; Hausman, R.F. Jr.

1985-05-01

We discuss various applications of the Lanczos method to describe properties of many-body microscopic systems in nucleosynthesis and cosmology. These calculations include: solar neutrino detectors; beta-decay of excited nuclear states; electron-capture rates during a core-bounce supernova; exotic quarked nuclei as a catalyst for hydrogen burning; and the quark-hadron phase transition during the early universe. 27 refs., 3 figs

New method to incorporate Type B uncertainty into least-squares procedures in radionuclide metrology

International Nuclear Information System (INIS)

Han, Jubong; Lee, K.B.; Lee, Jong-Man; Park, Tae Soon; Oh, J.S.; Oh, Pil-Jei

2016-01-01

We discuss a new method to incorporate Type B uncertainty into least-squares procedures. The new method is based on an extension of the likelihood function from which a conventional least-squares function is derived. The extended likelihood function is the product of the original likelihood function with additional PDFs (Probability Density Functions) that characterize the Type B uncertainties. The PDFs are considered to describe one's incomplete knowledge on correction factors being called nuisance parameters. We use the extended likelihood function to make point and interval estimations of parameters in the basically same way as the least-squares function used in the conventional least-squares method is derived. Since the nuisance parameters are not of interest and should be prevented from appearing in the final result, we eliminate such nuisance parameters by using the profile likelihood. As an example, we present a case study for a linear regression analysis with a common component of Type B uncertainty. In this example we compare the analysis results obtained from using our procedure with those from conventional methods. - Highlights: • A new method proposed to incorporate Type B uncertainty into least-squares method. • The method constructed from the likelihood function and PDFs of Type B uncertainty. • A case study performed to compare results from the new and the conventional method. • Fitted parameters are consistent but with larger uncertainties in the new method.

Different types of anastomotic methods: a review of literature

Directory of Open Access Journals (Sweden)

Shadi Mooloughi

2015-09-01

Full Text Available Constructing successful anastomosis is an important concept in gastrointestinal tract surgeries, which can be affected by various factors such as preoperative bowel condition, intra- and postoperative complications, bleeding and the device characteristics. Suturing, stapling and compression anastomosis are different techniques. Despite the invention of compression anastomosis, which goes back almost two centuries, this method has not obtained the popularity of the suturing and stapling anastomosis and further studies are required. Designing methods and devices with no drawbacks might reduce the complications associated with anastomosis as the alternative to suturing and stapling anastomoses. Several materials can be used as reinforcement materials, which can improve the consequences of the stapled anastomosis. In addition to reinforcement materials, other forms of supports have been proposed, which might be capable of reducing the postoperative complications of anastomosis. In this study, we briefly review various types of anastomotic techniques and associated complications in different types of gastrointestinal surgeries.

Clostridium difficile infection: Early history, diagnosis and molecular strain typing methods.

Science.gov (United States)

Rodriguez, C; Van Broeck, J; Taminiau, B; Delmée, M; Daube, G

2016-08-01

Recognised as the leading cause of nosocomial antibiotic-associated diarrhoea, the incidence of Clostridium difficile infection (CDI) remains high despite efforts to improve prevention and reduce the spread of the bacterium in healthcare settings. In the last decade, many studies have focused on the epidemiology and rapid diagnosis of CDI. In addition, different typing methods have been developed for epidemiological studies. This review explores the history of C. difficile and the current scope of the infection. The variety of available laboratory tests for CDI diagnosis and strain typing methods are also examined. Copyright © 2016 Elsevier Ltd. All rights reserved.

On Efficient Numerical Approximation of the Bilinear Form c* A(-1)b

Czech Academy of Sciences Publication Activity Database

Strakoš, Z.; Tichý, Petr

2011-01-01

Roč. 33, č. 2 (2011), s. 565-587 ISSN 1064-8275 R&D Projects: GA AV ČR IAA100300802 Grant - others:GA ČR(CZ) GA201/09/0917; GA AV ČR(CZ) M100300901 Program:GA Institutional research plan: CEZ:AV0Z10300504 Keywords : bilinear forms * scattering amplitude * method of moments * Krylov subspace methods * conjugate gradient method * biconjugate gradient method * Lanczos algorithm * Arnoldi algorithm * Gauss-Christoffel quadrature * model reduction Subject RIV: BA - General Mathematics Impact factor: 1.569, year: 2011

Computation of dominant eigenvalues and eigenvectors: A comparative study of algorithms

International Nuclear Information System (INIS)

Nightingale, M.P.; Viswanath, V.S.; Mueller, G.

1993-01-01

We investigate two widely used recursive algorithms for the computation of eigenvectors with extreme eigenvalues of large symmetric matrices---the modified Lanczoes method and the conjugate-gradient method. The goal is to establish a connection between their underlying principles and to evaluate their performance in applications to Hamiltonian and transfer matrices of selected model systems of interest in condensed matter physics and statistical mechanics. The conjugate-gradient method is found to converge more rapidly for understandable reasons, while storage requirements are the same for both methods

Chosen interval methods for solving linear interval systems with special type of matrix

Science.gov (United States)

Szyszka, Barbara

2013-10-01

The paper is devoted to chosen direct interval methods for solving linear interval systems with special type of matrix. This kind of matrix: band matrix with a parameter, from finite difference problem is obtained. Such linear systems occur while solving one dimensional wave equation (Partial Differential Equations of hyperbolic type) by using the central difference interval method of the second order. Interval methods are constructed so as the errors of method are enclosed in obtained results, therefore presented linear interval systems contain elements that determining the errors of difference method. The chosen direct algorithms have been applied for solving linear systems because they have no errors of method. All calculations were performed in floating-point interval arithmetic.

Integration of equations of parabolic type by the method of nets

CERN Document Server

Saul'Yev, V K; Stark, M; Ulam, S

1964-01-01

International Series of Monographs in Pure and Applied Mathematics, Volume 54: Integration of Equations of Parabolic Type by the Method of Nets deals with solving parabolic partial differential equations using the method of nets. The first part of this volume focuses on the construction of net equations, with emphasis on the stability and accuracy of the approximating net equations. The method of nets or method of finite differences (used to define the corresponding numerical method in ordinary differential equations) is one of many different approximate methods of integration of partial diff

Cantor-type cylindrical-coordinate method for differential equations with local fractional derivatives

International Nuclear Information System (INIS)

Yang, Xiao-Jun; Srivastava, H.M.; He, Ji-Huan; Baleanu, Dumitru

2013-01-01

In this Letter, we propose to use the Cantor-type cylindrical-coordinate method in order to investigate a family of local fractional differential operators on Cantor sets. Some testing examples are given to illustrate the capability of the proposed method for the heat-conduction equation on a Cantor set and the damped wave equation in fractal strings. It is seen to be a powerful tool to convert differential equations on Cantor sets from Cantorian-coordinate systems to Cantor-type cylindrical-coordinate systems.

Two Modified Three-Term Type Conjugate Gradient Methods and Their Global Convergence for Unconstrained Optimization

Directory of Open Access Journals (Sweden)

Zhongbo Sun

2014-01-01

Full Text Available Two modified three-term type conjugate gradient algorithms which satisfy both the descent condition and the Dai-Liao type conjugacy condition are presented for unconstrained optimization. The first algorithm is a modification of the Hager and Zhang type algorithm in such a way that the search direction is descent and satisfies Dai-Liao’s type conjugacy condition. The second simple three-term type conjugate gradient method can generate sufficient decent directions at every iteration; moreover, this property is independent of the steplength line search. Also, the algorithms could be considered as a modification of the MBFGS method, but with different zk. Under some mild conditions, the given methods are global convergence, which is independent of the Wolfe line search for general functions. The numerical experiments show that the proposed methods are very robust and efficient.

Development of an ELA-DRA gene typing method based on pyrosequencing technology.

Science.gov (United States)

Díaz, S; Echeverría, M G; It, V; Posik, D M; Rogberg-Muñoz, A; Pena, N L; Peral-García, P; Vega-Pla, J L; Giovambattista, G

2008-11-01

The polymorphism of equine lymphocyte antigen (ELA) class II DRA gene had been detected by polymerase chain reaction-single-strand conformational polymorphism (PCR-SSCP) and reference strand-mediated conformation analysis. These methodologies allowed to identify 11 ELA-DRA exon 2 sequences, three of which are widely distributed among domestic horse breeds. Herein, we describe the development of a pyrosequencing-based method applicable to ELA-DRA typing, by screening samples from eight different horse breeds previously typed by PCR-SSCP. This sequence-based method would be useful in high-throughput genotyping of major histocompatibility complex genes in horses and other animal species, making this system interesting as a rapid screening method for animal genotyping of immune-related genes.

Method of renormalization potential for one model of Hartree-Fock-Slater type

CERN Document Server

Zasorin, Y V

2002-01-01

A new method of the potential renormalization for the quasiclassical model of the Hartree-Fock-Slater real potential is proposed. The method makes it possible to easily construct the wave functions and contrary to the majority od similar methods it does not require the knowledge of the real-type potential

Perovskite type nanopowders and thin films obtained by chemical methods

Directory of Open Access Journals (Sweden)

Viktor Fruth

2010-09-01

Full Text Available The review presents the contribution of the authors, to the preparation of two types of perovskites, namely BiFeO3 and LaCoO3, by innovative methods. The studied perovskites were obtained as powders, films and sintered bodies. Their complex structural and morphological characterization is also presented. The obtained results have underlined the important influence of the method of preparation on the properties of the synthesized perovskites.

Molecular typing of Legionella pneumophila from air-conditioning cooling waters using mip gene, SBT, and FAFLP methods.

Science.gov (United States)

Gong, Xiangli; Li, Juntao; Zhang, Ying; Hou, Shuiping; Qu, Pinghua; Yang, Zhicong; Chen, Shouyi

2017-08-01

Legionella spp. are important waterborne pathogens. Molecular typing has become an important method for outbreaks investigations and source tracking of Legionnaires. In a survey program conducted by the Guangzhou Center for Disease Control and Prevention, multiple serotypes Legionella pneumophila (L. pneumophila) were isolated from waters in air-conditioning cooling towers in urban Guangzhou region, China between 2008 and 2011. Three genotyping methods, mip (macrophage infectivity potentiator) genotyping, SBT (sequence-based typing), and FAFLP (fluorescent amplified fragment length polymorphism analysis) were used to type these waterborne L. pneumophila isolates. The three methods were capable of typing all the 134 isolates and a reference strain of L. pneumophila (ATCC33153), with discriminatory indices of 0.7034, 0.9218, and 0.9376, for the mip, SBT, and FAFLP methods respectively. Among the 9 serotypes of the 134 isolates, 10, 50, and 34 molecular types were detected by the mip, SBT, and FAFLP methods respectively. The mip genotyping and SBT typing are more feasible for inter-laboratory results sharing and comparison of different types of L. pneumophila. The SBT and FAFLP typing methods were rapid with higher discriminatory abilities. Combinations of two or more of the typing methods enables more accurate typing of Legionella isolates for outbreak investigations and source tracking of Legionnaires. Copyright © 2017 Elsevier B.V. All rights reserved.

Method of mechanical quadratures for solving singular integral equations of various types

Science.gov (United States)

Sahakyan, A. V.; Amirjanyan, H. A.

2018-04-01

The method of mechanical quadratures is proposed as a common approach intended for solving the integral equations defined on finite intervals and containing Cauchy-type singular integrals. This method can be used to solve singular integral equations of the first and second kind, equations with generalized kernel, weakly singular equations, and integro-differential equations. The quadrature rules for several different integrals represented through the same coefficients are presented. This allows one to reduce the integral equations containing integrals of different types to a system of linear algebraic equations.

Collective vector method for calculation of E1 moments in atomic transition arrays

International Nuclear Information System (INIS)

Bloom, S.D.; Goldberg, A.

1985-10-01

The CV (collective vector) method for calculating E1 moments for a transition array is described and applied in two cases, herein denoted Z26A and Z26B, pertaining to two different configurations of iron VI. The basic idea of the method is to create a CV from each of the parent (''initial state'') state-vectors of the transition array by application of the E1 operator. The moments of each of these CV's, referred to the parent energy, are then the rigorous moments for that parent, requiring no state decomposition of the manifold of daughter state-vectors. Since, in cases of practical interest, the daughter manifold can be orders of magnitude larger in size than the parent manifold, this makes possible the calculation of many moments higher than the second in situations hitherto unattainable via standard methods. The combination of the moments of all the parents, with proper statistical weighting, then yields the transition array moments from which the transition strength distribution can be derived by various procedures. We describe two of these procedures: (1) The well-known GC (Gram-Charlier) expansion in terms of Hermite polynomials, (2) The Lanczos algorithm or Stieltjes imaging method, also called herein the delta expansion. Application is made in the cases of Z26A (50 lines) and Z26B (5523 lines) and the relative merits and shortcomings of the two procedures are discussed. 10 refs., 15 figs., 2 tabs

Effects of different pretreatment methods on fermentation types and dominant bacteria for hydrogen production

Energy Technology Data Exchange (ETDEWEB)

Ren, Nan-Qi; Guo, Wan-Qian; Liu, Bing-Feng; Wang, Xing-Zu; Ding, Jie; Chen, Zhao-Bo [State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, Heilongjiang (China); Wang, Xiang-Jing; Xiang, Wen-Sheng [Research Center of Life Science and Biotechnology, Northeast Agricultural University, Harbin 150030 (China)

2008-08-15

In order to enrich hydrogen producing bacteria and to establish high-efficient communities of the mixed microbial cultures, inoculum needs to be pretreated before the cultivation. Four pretreatment methods including heat-shock pretreatment, acid pretreatment, alkaline pretreatment and repeated-aeration pretreatment were performed on the seed sludge which was collected from a secondary settling tank of a municipal wastewater treatment plant. In contrast to the control test without any pretreatment, the heat-shock pretreatment, acid pretreatment and repeated-aeration pretreatment completely suppressed the methanogenic activity of the seed sludge, but the alkaline pretreatment did not. Employing different pretreatment methods resulted in the change in fermentation types as butyric-acid type fermentation was achieved by the heat-shock and alkaline pretreatments, mixed-acid type fermentation was achieved by acid pretreatment and the control, and ethanol-type fermentation was observed by repeated-aeration pretreatment. Denaturing gradient gel electrophoresis (DGGE) profiles revealed that pretreatment method substantially affected the species composition of microbial communities. The highest hydrogen yield of 1.96 mol/mol-glucose was observed with the repeated-aeration pretreatment method, while the lowest was obtained as the seed sludge was acidified. It is concluded that the pretreatment methods led to the difference in the initial microbial communities which might be directly responsible for different fermentation types and hydrogen yields. (author)

Prototyping method for Bragg-type atom interferometers

Energy Technology Data Exchange (ETDEWEB)

Benton, Brandon; Krygier, Michael; Heward, Jeffrey; Edwards, Mark [Department of Physics, Georgia Southern University, Statesboro, Georgia 30460-8031 (United States); Clark, Charles W. [Joint Quantum Insitute, National Institute of Standards and Technology and the University of Maryland, Gaithersburg, Maryland 20899 (United States)

2011-10-15

We present a method for rapid modeling of new Bragg ultracold atom-interferometer (AI) designs useful for assessing the performance of such interferometers. The method simulates the overall effect on the condensate wave function in a given AI design using two separate elements. These are (1) modeling the effect of a Bragg pulse on the wave function and (2) approximating the evolution of the wave function during the intervals between the pulses. The actual sequence of these pulses and intervals is then followed to determine the approximate final wave function from which the interference pattern can be calculated. The exact evolution between pulses is assumed to be governed by the Gross-Pitaevskii (GP) equation whose solution is approximated using a Lagrangian variational method to facilitate rapid estimation of performance. The method presented here is an extension of an earlier one that was used to analyze the results of an experiment [J. E. Simsarian et al., Phys. Rev. Lett. 85, 2040 (2000)], where the phase of a Bose-Einstein condensate was measured using a Mach-Zehnder-type Bragg AI. We have developed both 1D and 3D versions of this method and we have determined their validity by comparing their predicted interference patterns with those obtained by numerical integration of the 1D GP equation and with the results of the above experiment. We find excellent agreement between the 1D interference patterns predicted by this method and those found by the GP equation. We show that we can reproduce all of the results of that experiment without recourse to an ad hoc velocity-kick correction needed by the earlier method, including some experimental results that the earlier model did not predict. We also found that this method provides estimates of 1D interference patterns at least four orders-of-magnitude faster than direct numerical solution of the 1D GP equation.

Molecular methods for typing of Helicobacter pylori and their applications

DEFF Research Database (Denmark)

Colding, H; Hartzen, S H; Roshanisefat, H

1999-01-01

.g. the urease genes. Furthermore, reproducibility, discriminatory power, ease of performance and interpretation, cost and toxic procedures of each method are assessed. To date no direct comparison of all the molecular typing methods described has been performed in the same study with the same H. pylori strains....... However, PCR analysis of the urease gene directly on suspensions of H. pylori or gastric biopsy material seems to be useful for routine use and applicable in specific epidemiological situations....

Comparison effectiveness of cooperative learning type STAD with cooperative learning type TPS in terms of mathematical method of Junior High School students

Science.gov (United States)

Wahyuni, A.

2018-05-01

This research is aimed to find out whether the model of cooperative learning type Student Team Achievement Division (STAD) is more effective than cooperative learning type Think-Pair-Share in SMP Negeri 7 Yogyakarta. This research was a quasi-experimental research, using two experimental groups. The population of research was all students of 7thclass in SMP Negeri 7 Yogyakarta that consists of 5 Classes. From the population were taken 2 classes randomly which used as sample. The instrument to collect data was a description test. Measurement of instrument validity use content validity and construct validity, while measuring instrument reliability use Cronbach Alpha formula. To investigate the effectiveness of cooperative learning type STAD and cooperative learning type TPS on the aspect of student’s mathematical method, the datas were analyzed by one sample test. Comparing the effectiveness of cooperative learning type STAD and TPS in terms of mathematical communication skills by using t-test. Normality test was not conducted because the sample of research more than 30 students, while homogeneity tested by using Kolmogorov Smirnov test. The analysis was performed at 5% confidence level.The results show as follows : 1) The model of cooperative learning type STAD and TPS are effective in terms of mathematical method of junior high school students. 2). STAD type cooperative learning model is more effective than TPS type cooperative learning model in terms of mathematical methods of junior high school students.

A new efficient method for the calculation of interior eigenpairs and its application to vibrational structure problems

Science.gov (United States)

Petrenko, Taras; Rauhut, Guntram

2017-03-01

Vibrational configuration interaction theory is a common method for calculating vibrational levels and associated IR and Raman spectra of small and medium-sized molecules. When combined with appropriate configuration selection procedures, the method allows the treatment of configuration spaces with up to 1010 configurations. In general, this approach pursues the construction of the eigenstates with significant contributions of physically relevant configurations. The corresponding eigenfunctions are evaluated in the subspace of selected configurations. However, it can easily reach the dimension which is not tractable for conventional eigenvalue solvers. Although Davidson and Lanczos methods are the methods of choice for calculating exterior eigenvalues, they usually fall into stagnation when applied to interior states. The latter are commonly treated by the Jacobi-Davidson method. This approach in conjunction with matrix factorization for solving the correction equation (CE) is prohibitive for larger problems, and it has limited efficiency if the solution of the CE is based on Krylov's subspace algorithms. We propose an iterative subspace method that targets the eigenvectors with significant contributions to a given reference vector and is based on the optimality condition for the residual norm corresponding to the error in the solution vector. The subspace extraction and expansion are modified according to these principles which allow very efficient calculation of interior vibrational states with a strong multireference character in different vibrational structure problems. The convergence behavior of the method and its performance in comparison with the aforementioned algorithms are investigated in a set of benchmark calculations.

P-type sp3-bonded BN/n-type Si heterodiode solar cell fabricated by laser-plasma synchronous CVD method

International Nuclear Information System (INIS)

Komatsu, Shojiro; Nagata, Takahiro; Chikyo, Toyohiro; Sato, Yuhei; Watanabe, Takayuki; Hirano, Daisuke; Takizawa, Takeo; Nakamura, Katsumitsu; Hashimoto, Takuya; Nakamura, Takuya; Koga, Kazunori; Shiratani, Masaharu; Yamamoto, Atsushi

2009-01-01

A heterojunction of p-type sp 3 -bonded boron nitride (BN) and n-type Si fabricated by laser-plasma synchronous chemical vapour deposition (CVD) showed excellent rectifying properties and proved to work as a solar cell with photovoltaic conversion efficiency of 1.76%. The BN film was deposited on an n-type Si (1 0 0) substrate by plasma CVD from B 2 H 6 + NH 3 + Ar while doping of Si into the BN film was induced by the simultaneous irradiation of an intense excimer laser with a pulse power of 490 mJ cm -2 , at a wavelength of 193 nm and at a repetition rate of 20 Hz. The source of dopant Si was supposed to be the Si substrate ablated at the initial stage of the film growth. The laser enhanced the doping (and/or diffusion) of Si into BN as well as the growth of sp 3 -bonded BN simultaneously in this method. P-type conduction of BN films was determined by the hot (thermoelectric) probe method. The BN/Si heterodiode with an essentially transparent p-type BN as a front layer is supposed to efficiently absorb light reaching the active region so as to potentially result in high efficiency.

Calculation method of CGH for Binocular Eyepiece-Type Electro Holography

International Nuclear Information System (INIS)

Yang, Chanyoung; Yoneyama, Takuo; Sakamoto, Yuji; Okuyama, Fumio

2013-01-01

We had researched about eyepiece-type electro holography to display 3-D images of larger objects at wider angle. We had enlarged visual field considering depth of object with Fourier optical system using two lenses. In this paper, we extend our system for binocular. In the binocular system, we use two different holograms for each eye. The 3-D image for left eye should be observed like the real object observed using left eye and the same for right eye. So, we propose a method of calculation of computer-generated hologram (CGH) transforming the coordinate system of the model data to make two holograms for binocular eyepiece-type electro holography. The coordinate system of original model data is called the world coordinate system. The left and the right coordinate system are transformed from the world coordinate system. We also propose the method for correcting the installation error that occurs when placing the electronic and optical devices. The installation error is calculated and the model data is corrected using the distance between measured position and setup position of the reconstructed image Optical reconstruction experiments were carried out to verify the proposed method.

Numerically Exact Calculation of Rovibrational Levels of Cl^-H_2O

Science.gov (United States)

Wang, Xiao-Gang; Carrington, Tucker

2014-06-01

Large amplitude vibrations of Van der Waals clusters are important because they reveal large regions of a potential energy surface (PES). To calculate spectra of Van der Waals clusters it is common to use an adiabatic approximation. When coupling between intra- and inter-molecular coordinates is important non-adiabatic coupling cannot be neglected and it is therefore critical to develop and test theoretical methods that couple both types of coordinates. We have developed new product basis and contracted basis Lanczos methods for Van der Waals complexes and tested them by computing rovibrational energy levels of Cl^-H_2O. The new product basis is made of functions of the inter-monomer distance, Wigner functions that depend on Euler angles specifying the orientation of H_2O with respect to a frame attached to the inter-monomer Jacobi vector, basis functions for H_2O vibration, and Wigner functions that depend on Euler angles specifying the orientation of the inter-monomer Jacobi vector with respect to a space-fixed frame. An advantage of this product basis is that it can be used to make an efficient contracted basis by replacing the vibrational basis functions for the monomer with monomer vibrational wavefunctions. Due to weak coupling between intra- and inter-molecular coordinates, only a few tens of monomer vibrational wavefunctions are necessary. The validity of the two new methods is established by comparing energy levels with benchmark rovibrational levels obtained with polyspherical coordinates and spherical harmonic type basis functions. For all bases, product structure is exploited to calculate eigenvalues with the Lanczos algorithm. For Cl^-H_2O, we are able, for the first time, to compute accurate splittings due to tunnelling between the two equivalent C_s minima. We use the PES of Rheinecker and Bowman (RB). Our results are in good agreement with experiment for the five fundamental bands observed. J. Rheinecker and J. M. Bowman, J. Chem. Phys. 124 131102

A fast and robust method for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2

DEFF Research Database (Denmark)

Kvisgaard, Lise Kirstine; Hjulsager, Charlotte Kristiane; Fahnøe, Ulrik

2013-01-01

. In the present study, fast and robust methods for long range RT-PCR amplification and subsequent next generation sequencing (NGS) were developed and validated on nine Type 1 and nine Type 2 PRRSV viruses. The methods generated robust and reliable sequences both on primary material and cell culture adapted...... viruses and the protocols performed well on all three NGS platforms tested (Roche 454 FLX, Illumina HiSeq2000, and Ion Torrent PGM™ Sequencer). These methods will greatly facilitate the generation of more full genome PRRSV sequences globally....

Expert System for Determination of Type Lenses Glasses Using Forward Chaining Method

Directory of Open Access Journals (Sweden)

Atikah Ari Pramesti

2016-11-01

Full Text Available One of the branches of computer science that is widely used by humans to help her work is the establishment of an expert system. In this study we will design an expert system for determining the type of spectacle lenses using a forward chaining method. In forward chaining method, starting with the initial information (early symptoms and moved forward to fit more information to find the information in accordance with the rules of the knowledge base and production, and will be concluded in the form of the type of disorder diagnosis of eye disorders and provide solutions in the form of lenses of eyeglasses. Result from this study is that the match calculation of algorithm of forward chaining method between system and manual calculations produce the same output.

An Improved MLVF Method and Its Comparison with Traditional MLVF, spa Typing, MLST/SCCmec and PFGE for the Typing of Methicillin-Resistant Staphylococcus aureus

Science.gov (United States)

Du, Xue-Fei; Xiao, Meng; Liang, Hong-Yan; Sun, Zhe; Jiang, Yue-Hong; Chen, Guo-Yu; Meng, Xiao-Yu; Zou, Gui-Ling; Zhang, Li; Liu, Ya-Li; Zhang, Hui; Sun, Hong-Li; Jiang, Xiao-Feng; Xu, Ying-Chun

2014-01-01

Methicillin-resistant Staphylococcus aureus (MRSA) has become an important nosocomial pathogen, causing considerable morbidity and mortality. During the last 20 years, a variety of genotyping methods have been introduced for screening the prevalence of MRSA. In this study, we developed and evaluated an improved approach capillary gel electrophoresis based multilocus variable-number tandem-repeat fingerprinting (CGE/MLVF) for rapid MRSA typing. A total of 42 well-characterized strains and 116 non-repetitive clinical MRSA isolates collected from six hospitals in northeast China between 2009 and 2010 were tested. The results obtained by CGE/MLVF against clinical isolates were compared with traditional MLVF, spa typing, Multilocus sequence typing/staphylococcal cassette chromosome mec (MLST/SCCmec) and pulse field gel electrophoresis (PFGE). The discriminatory power estimated by Simpson’s index of diversity was 0.855 (28 types), 0.855 (28 patterns), 0.623 (11 types), 0.517 (8 types) and 0.854 (28 patterns) for CGE/MLVF, traditional MLVF, spa typing, MLST/SCCmec and PFGE, respectively. All methods tested showed a satisfied concordance in clonal complex level calculated by adjusted Rand’s coefficient. CGE/MLVF showed better reproducibility and accuracy than traditional MLVF and PFGE methods. In addition, the CGE/MLVF has potential to produce portable results. In conclusion, CGE/MLVF is a rapid and easy to use MRSA typing method with lower cost, good reproducibility and high discriminatory power for monitoring the outbreak and clonal spread of MRSA isolates. PMID:24406728

Investigation on Carbohydrate Counting Method in Type 1 Diabetic Patients

Directory of Open Access Journals (Sweden)

Osman Son

2014-01-01

Full Text Available Objective. The results from Diabetes Control and Complications Trial (DCCT have propounded the importance of the approach of treatment by medical nutrition when treating diabetes mellitus (DM. During this study, we tried to inquire carbohydrate (Kh count method’s positive effects on the type 1 DM treatment’s success as well as on the life quality of the patients. Methods. 22 of 37 type 1 DM patients who applied to Eskişehir Osmangazi University, Faculty of Medicine Hospital, Department of Endocrinology and Metabolism, had been treated by Kh count method and 15 of them are treated by multiple dosage intensive insulin treatment with applying standard diabetic diet as a control group and both of groups were under close follow-up for 6 months. Required approval was taken from the Ethical Committee of Eskişehir Osmangazi University, Medical Faculty, as well as informed consent from the patients. The body weight of patients who are treated by carbohydrate count method and multiple dosage intensive insulin treatment during the study beginning and after 6-month term, body mass index, and body compositions are analyzed. A short life quality and medical research survey applied. At statistical analysis, t-test, chi-squared test, and Mann-Whitney U test were used. Results. There had been no significant change determined at glycemic control indicators between the Kh counting group and the standard diabetic diet and multiple dosage insulin treatment group in our study. Conclusion. As a result, Kh counting method which offers a flexible nutrition plan to diabetic individuals is a functional method.

A comparative study of iterative solutions to linear systems arising in quantum mechanics

International Nuclear Information System (INIS)

Jing Yanfei; Huang Tingzhu; Duan Yong; Carpentieri, Bruno

2010-01-01

This study is mainly focused on iterative solutions with simple diagonal preconditioning to two complex-valued nonsymmetric systems of linear equations arising from a computational chemistry model problem proposed by Sherry Li of NERSC. Numerical experiments show the feasibility of iterative methods to some extent when applied to the problems and reveal the competitiveness of our recently proposed Lanczos biconjugate A-orthonormalization methods to other classic and popular iterative methods. By the way, experiment results also indicate that application specific preconditioners may be mandatory and required for accelerating convergence.

An approximation method for nonlinear integral equations of Hammerstein type

International Nuclear Information System (INIS)

Chidume, C.E.; Moore, C.

1989-05-01

The solution of a nonlinear integral equation of Hammerstein type in Hilbert spaces is approximated by means of a fixed point iteration method. Explicit error estimates are given and, in some cases, convergence is shown to be at least as fast as a geometric progression. (author). 25 refs

Modern algorithms for large sparse eigenvalue problems

International Nuclear Information System (INIS)

Meyer, A.

1987-01-01

The volume is written for mathematicians interested in (numerical) linear algebra and in the solution of large sparse eigenvalue problems, as well as for specialists in engineering, who use the considered algorithms in the investigation of eigenoscillations of structures, in reactor physics, etc. Some variants of the algorithms based on the idea of a gradient-type direction of movement are presented and their convergence properties are discussed. From this, a general strategy for the direct use of preconditionings for the eigenvalue problem is derived. In this new approach the necessity of the solution of large linear systems is entirely avoided. Hence, these methods represent a new alternative to some other modern eigenvalue algorithms, as they show a slightly slower convergence on the one hand but essentially lower numerical and data processing problems on the other hand. A brief description and comparison of some well-known methods (i.e. simultaneous iteration, Lanczos algorithm) completes this volume. (author)

Comparison and Evaluation of the Molecular Typing Methods for Toxigenic Vibrio cholerae in Southwest China.

Science.gov (United States)

Liao, Feng; Mo, Zhishuo; Chen, Meiling; Pang, Bo; Fu, Xiaoqing; Xu, Wen; Jing, Huaiqi; Kan, Biao; Gu, Wenpeng

2018-01-01

Vibrio cholerae O1 strains taken from the repository of Yunnan province, southwest China, were abundant and special. We selected 70 typical toxigenic V. cholerae (69 O1 and one O139 serogroup strains) isolated from Yunnan province, performed the pulsed field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and MLST of virulence gene (V-MLST) methods, and evaluated the resolution abilities for typing methods. The ctxB subunit sequence analysis for all strains have shown that cholera between 1986 and 1995 was associated with mixed infections with El Tor and El Tor variants, while infections after 1996 were all caused by El Tor variant strains. Seventy V. cholerae obtained 50 PFGE patterns, with a high resolution. The strains could be divided into three groups with predominance of strains isolated during 1980s, 1990s, and 2000s, respectively, showing a good consistency with the epidemiological investigation. We also evaluated two MLST method for V. cholerae , one was used seven housekeeping genes ( adk , gyrB , metE , pntA , mdh , purM , and pyrC ), and all the isolates belonged to ST69; another was used nine housekeeping genes ( cat , chi , dnaE , gyrB , lap , pgm , recA , rstA , and gmd ). A total of seven sequence types (STs) were found by using this method for all the strains; among them, rstA gene had five alleles, recA and gmd have two alleles, and others had only one allele. The virulence gene sequence typing method ( ctxAB , tcpA , and toxR ) showed that 70 strains were divided into nine STs; among them, tcpA gene had six alleles, toxR had five alleles, while ctxAB was identical for all the strains. The latter two sequences based typing methods also had consistency with epidemiology of the strains. PFGE had a higher resolution ability compared with the sequence based typing method, and MLST used seven housekeeping genes showed the lower resolution power than nine housekeeping genes and virulence genes methods. These two sequence typing methods

Comparison and Evaluation of the Molecular Typing Methods for Toxigenic Vibrio cholerae in Southwest China

Directory of Open Access Journals (Sweden)

Feng Liao

2018-05-01

Full Text Available Vibrio cholerae O1 strains taken from the repository of Yunnan province, southwest China, were abundant and special. We selected 70 typical toxigenic V. cholerae (69 O1 and one O139 serogroup strains isolated from Yunnan province, performed the pulsed field gel electrophoresis (PFGE, multilocus sequence typing (MLST, and MLST of virulence gene (V-MLST methods, and evaluated the resolution abilities for typing methods. The ctxB subunit sequence analysis for all strains have shown that cholera between 1986 and 1995 was associated with mixed infections with El Tor and El Tor variants, while infections after 1996 were all caused by El Tor variant strains. Seventy V. cholerae obtained 50 PFGE patterns, with a high resolution. The strains could be divided into three groups with predominance of strains isolated during 1980s, 1990s, and 2000s, respectively, showing a good consistency with the epidemiological investigation. We also evaluated two MLST method for V. cholerae, one was used seven housekeeping genes (adk, gyrB, metE, pntA, mdh, purM, and pyrC, and all the isolates belonged to ST69; another was used nine housekeeping genes (cat, chi, dnaE, gyrB, lap, pgm, recA, rstA, and gmd. A total of seven sequence types (STs were found by using this method for all the strains; among them, rstA gene had five alleles, recA and gmd have two alleles, and others had only one allele. The virulence gene sequence typing method (ctxAB, tcpA, and toxR showed that 70 strains were divided into nine STs; among them, tcpA gene had six alleles, toxR had five alleles, while ctxAB was identical for all the strains. The latter two sequences based typing methods also had consistency with epidemiology of the strains. PFGE had a higher resolution ability compared with the sequence based typing method, and MLST used seven housekeeping genes showed the lower resolution power than nine housekeeping genes and virulence genes methods. These two sequence typing methods could

OUTCOME OF GARTLAND TYPE – II SUPRACONDYLAR FRACTURES OF HUMERUS TREATED BY CONSERVATIVE METHOD

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Dinesh Mitra

2015-08-01

Full Text Available BACKGROUND: The current literatures recommend operative method (closed reduction and pinning for type II supracondylar fractures of humerus. But some surgeons still prefer conservative method for type II supracondylar fractures of humerus. We pr esent results of 14 cases of type II supracondylar fractures treated with CR and AE POP immobilization . The purpose of this study is to evaluate the outcome of conservative treatment in management of type II supracondylar fracture of humerus. MATERIALS AND METHODS: Fourteen children treated by conservative methods (CR & AE POP between January 2013 and December 2014 is included in this study. The mean age group is 6.8 years (3 years - 11 years. The patient follow up is done for a minimum of 10 - 12 weeks. Treatment outcome is based on final clinical and radiological assessments and grading of results was done using Flynn’s criteria. RESULTS: Gartland type II fracture gives 82% excellent results and 28 % good results as per Flynn’s criteria. Of the 14 patien ts only two cases required re manipulation. Surgical intervention was not needed for any of the patients. No patients in this study developed compartment syndrome / cubitus varus deformity. CONCLUSION: Satisfactory results can be obtained with conservative treatment (closed reduction and above elbow POP if proper selection of the patient and careful clinical and radiological follow up is done

Dai-Kou type conjugate gradient methods with a line search only using gradient.

Science.gov (United States)

Huang, Yuanyuan; Liu, Changhe

2017-01-01

In this paper, the Dai-Kou type conjugate gradient methods are developed to solve the optimality condition of an unconstrained optimization, they only utilize gradient information and have broader application scope. Under suitable conditions, the developed methods are globally convergent. Numerical tests and comparisons with the PRP+ conjugate gradient method only using gradient show that the methods are efficient.

S-type and P-type habitability in stellar binary systems: A comprehensive approach. I. Method and applications

Energy Technology Data Exchange (ETDEWEB)

Cuntz, M., E-mail: cuntz@uta.edu [Department of Physics, University of Texas at Arlington, Arlington, TX 76019-0059 (United States)

2014-01-01

A comprehensive approach is provided for the study of both S-type and P-type habitability in stellar binary systems, which in principle can also be expanded to systems of higher order. P-type orbits occur when the planet orbits both binary components, whereas in the case of S-type orbits, the planet orbits only one of the binary components with the second component considered a perturbator. The selected approach encapsulates a variety of different aspects, which include: (1) the consideration of a joint constraint, including orbital stability and a habitable region for a putative system planet through the stellar radiative energy fluxes ({sup r}adiative habitable zone{sup ;} RHZ), needs to be met; (2) the treatment of conservative, general, and extended zones of habitability for the various systems as defined for the solar system and beyond; (3) the provision of a combined formalism for the assessment of both S-type and P-type habitability; in particular, mathematical criteria are presented for the kind of system in which S-type and P-type habitability is realized; (4) applications of the attained theoretical approach to standard (theoretical) main-sequence stars. In principle, five different cases of habitability are identified, which are S-type and P-type habitability provided by the full extent of the RHZs; habitability, where the RHZs are truncated by the additional constraint of planetary orbital stability (referred to as ST- and PT-type, respectively); and cases of no habitability at all. Regarding the treatment of planetary orbital stability, we utilize the formulae of Holman and Wiegert as also used in previous studies. In this work, we focus on binary systems in circular orbits. Future applications will also consider binary systems in elliptical orbits and provide thorough comparisons to other methods and results given in the literature.

Fueling method in LMFBR type reactors

International Nuclear Information System (INIS)

Kawashima, Katsuyuki; Inoue, Kotaro.

1985-01-01

Purpose: To extend the burning cycle and decrease the number of fuel exchange batches without increasing the excess reactivity at the initial stage of burning cycles upon fuel loading to an LMFBR type reactor. Method: Each of the burning cycles is divided into a plurality of burning sections. Fuels are charged at the first burning section in each of the cycles such that driver fuel assemblies and blanket assemblies or those assemblies containing neutron absorbers such as boron are distributed in mixture in the reactor core region. At the final stage of the first burning section, the blanket assemblies or neutron absorber-containing assemblies present in mixture are partially or entirely replaced with driver fuel assemblies depending on the number of burning sections such that all of them are replaced with the driver fuel assemblies till the start of the final burning section of the abovementioned cycle. The object of this invention can thus be attained. (Horiuchi, T.)

Method for controlling FBR type reactor

International Nuclear Information System (INIS)

Tamano, Toyomi; Iwashita, Tsuyoshi; Sakuragi, Masanori

1991-01-01

The present invention provides a controlling method for moderating thermal transient upon trip in an FBR type reactor. A flow channel for bypassing an intermediate heat exchanger is disposed in a secondary Na system. Then, bypassing flow rate is controlled so as to suppress fluctuations of temperature at a primary exit of the intermediate heat exchanger. Bypassing operation by using the bypassing flow channel is started at the same time with plant trip, to reduce the flow rate of secondary Na flown to the intermediate heat exchanger, so that the imbalance between the primary and the secondary Na flowrates is reduced. Accordingly, fluctuations of the temperature at the primary exit of the intermediate heat exchanger upon trip is suppressed. In view of the above, thermal transient applied to the reactor container upon plant trip can be moderated. As a result, the working life of the reactor can be extended, to improve plant integrity and safety. (I.S.)

Can model Hamiltonians describe the electron–electron interaction in π-conjugated systems?: PAH and graphene

International Nuclear Information System (INIS)

Chiappe, G; Louis, E; San-Fabián, E; Vergés, J A

2015-01-01

Model Hamiltonians have been, and still are, a valuable tool for investigating the electronic structure of systems for which mean field theories work poorly. This review will concentrate on the application of Pariser–Parr–Pople (PPP) and Hubbard Hamiltonians to investigate some relevant properties of polycyclic aromatic hydrocarbons (PAH) and graphene. When presenting these two Hamiltonians we will resort to second quantisation which, although not the way chosen in its original proposal of the former, is much clearer. We will not attempt to be comprehensive, but rather our objective will be to try to provide the reader with information on what kinds of problems they will encounter and what tools they will need to solve them. One of the key issues concerning model Hamiltonians that will be treated in detail is the choice of model parameters. Although model Hamiltonians reduce the complexity of the original Hamiltonian, they cannot be solved in most cases exactly. So, we shall first consider the Hartree–Fock approximation, still the only tool for handling large systems, besides density functional theory (DFT) approaches. We proceed by discussing to what extent one may exactly solve model Hamiltonians and the Lanczos approach. We shall describe the configuration interaction (CI) method, a common technology in quantum chemistry but one rarely used to solve model Hamiltonians. In particular, we propose a variant of the Lanczos method, inspired by CI, that has the novelty of using as the seed of the Lanczos process a mean field (Hartree–Fock) determinant (the method will be named LCI). Two questions of interest related to model Hamiltonians will be discussed: (i) when including long-range interactions, how crucial is including in the Hamiltonian the electronic charge that compensates ion charges? (ii) Is it possible to reduce a Hamiltonian incorporating Coulomb interactions (PPP) to an ‘effective’ Hamiltonian including only on-site interactions (Hubbard)? The

Assessment methods for Bree-type ratcheting without the necessity of linearization of stresses and strains

International Nuclear Information System (INIS)

Fujioka, Terutaka

2015-01-01

This paper proposes methods for assessing Bree-type ratcheting in a cylinder subjected to constant internal pressure and cyclic thermal loading. The proposed methods are elastic analysis-route and elastic–plastic analysis-route. The former is based on the polynomial approximation of the elastic stress distributions for thermal stresses and the reference stress concept for estimating primary stress. The latter elastic–plastic route method is based on the concept of relative elastic core size. The methods proposed were validated by performing elastic–plastic finite element analyses of a smooth cylinder that exhibited Bree-type ratcheting. - Highlights: • Rationalization of the ratcheting assessment has been made. • The proposed methods include both elastic and elastic-plastic routes. • The elastic route method is based on skeletal point stress by elastic FEA. • The elastic-plastic route is based on elastic core size in elastic-plastic FEA. • These have been validated by elastic-plastic FEA causing Bree-type ratcheting

A novel analysis strategy for HLA typing using a sequence-specific oligonucleotide probe method.

Science.gov (United States)

Won, D I

2017-11-01

The technique of reverse sequence-specific oligonucleotide probes (SSOPs) is commonly used in human leukocyte antigen (HLA) typing. In the conventional method for data analysis (exact pattern matching, EPM), the larger is the number of mismatched probes, the longer the time for final typing assignment. A novel strategy, filtering and scoring (FnS), has been developed to easily assign the best-fit allele pair. In the FnS method, candidate alleles and allele pairs were filtered based on (1) subject's ethnicity, and (2) the measured partial reaction pattern with only definitely negative or positive probes. Then, the complete reaction pattern for all probes (CRPoAPs) were compared between the raw sample and expected residual allele pairs to obtain mismatch scores. To compare the FnS and EPM methods, each analysis time (minutes:seconds) for reverse SSOP HLA typing with intermediate resolution (n = 507) was measured. The analysis time with FnS method was shorter than that of the EPM method [00:21 (00:08-01:47) and 01:04 (00:15-23:45), respectively, P typing in a comprehensive and quantitative comparison between measured and expected CRPoAPs of candidate allele pairs. Therefore, this analysis strategy might be useful in a clinical setting. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Methods for enhancing P-type doping in III-V semiconductor films

Science.gov (United States)

Liu, Feng; Stringfellow, Gerald; Zhu, Junyi

2017-08-01

Methods of doping a semiconductor film are provided. The methods comprise epitaxially growing the III-V semiconductor film in the presence of a dopant, a surfactant capable of acting as an electron reservoir, and hydrogen, under conditions that promote the formation of a III-V semiconductor film doped with the p-type dopant. In some embodiments of the methods, the epitaxial growth of the doped III-V semiconductor film is initiated at a first hydrogen partial pressure which is increased to a second hydrogen partial pressure during the epitaxial growth process.

Molecular Strain Typing of Mycobacterium tuberculosis: a Review of Frequently Used Methods

Science.gov (United States)

2016-01-01

Tuberculosis, caused by the bacterium Mycobacterium tuberculosis, remains one of the most serious global health problems. Molecular typing of M. tuberculosis has been used for various epidemiologic purposes as well as for clinical management. Currently, many techniques are available to type M. tuberculosis. Choosing the most appropriate technique in accordance with the existing laboratory conditions and the specific features of the geographic region is important. Insertion sequence IS6110-based restriction fragment length polymorphism (RFLP) analysis is considered the gold standard for the molecular epidemiologic investigations of tuberculosis. However, other polymerase chain reaction-based methods such as spacer oligonucleotide typing (spoligotyping), which detects 43 spacer sequence-interspersing direct repeats (DRs) in the genomic DR region; mycobacterial interspersed repetitive units–variable number tandem repeats, (MIRU-VNTR), which determines the number and size of tandem repetitive DNA sequences; repetitive-sequence-based PCR (rep-PCR), which provides high-throughput genotypic fingerprinting of multiple Mycobacterium species; and the recently developed genome-based whole genome sequencing methods demonstrate similar discriminatory power and greater convenience. This review focuses on techniques frequently used for the molecular typing of M. tuberculosis and discusses their general aspects and applications. PMID:27709842

A method of quantitative prediction for sandstone type uranium deposit in Russia and its application

International Nuclear Information System (INIS)

Chang Shushuai; Jiang Minzhong; Li Xiaolu

2008-01-01

The paper presents the foundational principle of quantitative predication for sandstone type uranium deposits in Russia. Some key methods such as physical-mathematical model construction and deposits prediction are described. The method has been applied to deposits prediction in Dahongshan region of Chaoshui basin. It is concluded that the technique can fortify the method of quantitative predication for sandstone type uranium deposits, and it could be used as a new technique in China. (authors)

AN OBJECT-BASED METHOD FOR CHINESE LANDFORM TYPES CLASSIFICATION

Directory of Open Access Journals (Sweden)

H. Ding

2016-06-01

Full Text Available Landform classification is a necessary task for various fields of landscape and regional planning, for example for landscape evaluation, erosion studies, hazard prediction, et al. This study proposes an improved object-based classification for Chinese landform types using the factor importance analysis of random forest and the gray-level co-occurrence matrix (GLCM. In this research, based on 1km DEM of China, the combination of the terrain factors extracted from DEM are selected by correlation analysis and Sheffield's entropy method. Random forest classification tree is applied to evaluate the importance of the terrain factors, which are used as multi-scale segmentation thresholds. Then the GLCM is conducted for the knowledge base of classification. The classification result was checked by using the 1:4,000,000 Chinese Geomorphological Map as reference. And the overall classification accuracy of the proposed method is 5.7% higher than ISODATA unsupervised classification, and 15.7% higher than the traditional object-based classification method.

Methods to incorporate different data types in the characterization process

International Nuclear Information System (INIS)

Gomez-Hernandez, J.J.; Carrera, J.; Medina, A.

1998-01-01

Spatial variability of the hydrodynamic parameters controlling radionuclide transport causes large uncertainties in the predictions. Methods have been devised to analyze spatial variability of these parameters and to model the uncertainty of the predictions. However, the final use given to large portions of the total data collected is minimal. Techniques have been developed and implemented with the aim of incorporating all types of data in the characterization of the spatial variability of conductivity/transmissivity. This serves to reduce the uncertainty in the predictions and to increase the confidence in the model. Types of data used in models include: geometric information, transmissivity data, piezometric data, geological/geophysical information tracer test concentration data, and isotopic data. (R.P.)

Applicability of meteor radiant determination methods depending on orbit type. I. High-eccentric orbits

Science.gov (United States)

Svoren, J.; Neslusan, L.; Porubcan, V.

1993-07-01

It is evident that there is no uniform method of calculating meteor radiants which would yield reliable results for all types of cometary orbits. In the present paper an analysis of this problem is presented, together with recommended methods for various types of orbits. Some additional methods resulting from mathematical modelling are presented and discussed together with Porter's, Steel-Baggaley's and Hasegawa's methods. In order to be able to compare how suitable the application of the individual radiant determination methods is, it is necessary to determine the accuracy with which they approximate real meteor orbits. To verify the accuracy with which the orbit of a meteoroid with at least one node at 1 AU fits the original orbit of the parent body, we applied the Southworth-Hawkins D-criterion (Southworth, R.B., Hawkins, G.S.: 1963, Smithson. Contr. Astrophys 7, 261). D0.2 the fit is rather poor and the change of orbit unrealistic. The optimal methods with the smallest values of D for given types of orbits are shown in two series of six plots. The new method of rotation around the line of apsides we propose is very appropriate in the region of small inclinations. There is no doubt that Hasegawa's omega-adjustment method (Hasegawa, I.: 1990, Publ. Astron. Soc. Japan 42, 175) has the widest application. A comparison of the theoretical radiants with the observed radiants of seven known meteor showers is also presented.

Evaluation of phenotypic and genotypic methods for epidemiological typing of Staphylococcus aureus isolates from bovine mastitis in Denmark

DEFF Research Database (Denmark)

Aarestrup, Frank Møller; Wegener, H. C.; Rosdahl, V. T.

1995-01-01

The value of five different typing methods (antibiogram typing, biotyping, phage typing, plasmid profiling and restriction fragment length polymorphism of the gene encoding 16S and 23S ribosomal RNA (ribotyping)), in discriminating 105 Staphylococcus aureus strains from bovine milk samples obtained....... The combination of phage, bio- or ribotyping or all three methods in combination are considered to be an efficient combination of typing methods for epidemiological investigation of S. aureus mastitis....

Pyocin-sensitivity testing as a method of typing Pseudomonas aeruginosa: use of "phage-free" preparations of pyocin.

Science.gov (United States)

Rampling, A; Whitby, J L; Wildy, P

1975-11-01

A method for pyocin-sensitivity typing by means of "phage-free" preparations of pyocin is described. The method was tested on 227 isolates of P. aeruginosa, collected from 34 different foci of infection in hospitals in the British Isles and the results were compared with those for combined serological and phage typing of all strains and pyocin production of 105 of the isolates. It is concluded that pyocin-sensitivity typing is a simple and reliable method giving a high degree of discrimination, comparable to that of combined serological and phage typing, and it is suitable for use in routine hospital laboratories.

Innovative Columnar Type of Grid Array SJ BIST HALT Method, Phase I

Data.gov (United States)

National Aeronautics and Space Administration — Ridgetop will develop a superior method for testing and qualifying columnar type of grid arrays such as field programmable gate arrays (FPGAs) packaged in column...

Changing practice: red blood cell typing by molecular methods for patients with sickle cell disease.

Science.gov (United States)

Casas, Jessica; Friedman, David F; Jackson, Tannoa; Vege, Sunitha; Westhoff, Connie M; Chou, Stella T

2015-06-01

Extended red blood cell (RBC) antigen matching is recommended to limit alloimmunization in patients with sickle cell disease (SCD). DNA-based testing to predict blood group phenotypes has enhanced availability of antigen-negative donor units and improved typing of transfused patients, but replacement of routine serologic typing for non-ABO antigens with molecular typing for patients has not been reported. This study compared the historical RBC antigen phenotypes obtained by hemagglutination methods with genotype predictions in 494 patients with SCD. For discrepant results, repeat serologic testing was performed and/or investigated by gene sequencing for silent or variant alleles. Seventy-one typing discrepancies were identified among 6360 antigen comparisons (1.1%). New specimens for repeat serologic testing were obtained for 66 discrepancies and retyping agreed with the genotype in 64 cases. One repeat Jk(b-) serologic phenotype, predicted Jk(b+) by genotype, was found by direct sequencing of JK to be a silenced allele, and one N typing discrepancy remains under investigation. Fifteen false-negative serologic results were associated with alleles encoding weak antigens or single-dose Fy(b) expression. DNA-based RBC typing provided improved accuracy and expanded information on RBC antigens compared to hemagglutination methods, leading to its implementation as the primary method for extended RBC typing for patients with SCD at our institution. © 2015 AABB.

A new method for non-invasive estimation of human muscle fiber type composition.

Directory of Open Access Journals (Sweden)

Audrey Baguet

Full Text Available BACKGROUND: It has been established that excellence in sports with short and long exercise duration requires a high proportion of fast-twitch (FT or type-II fibers and slow-twitch (ST or type-I fibers, respectively. Until today, the muscle biopsy method is still accepted as gold standard to measure muscle fiber type composition. Because of its invasive nature and high sampling variance, it would be useful to develop a non-invasive alternative. METHODOLOGY: Eighty-three control subjects, 15 talented young track-and-field athletes, 51 elite athletes and 14 ex-athletes volunteered to participate in the current study. The carnosine content of all 163 subjects was measured in the gastrocnemius muscle by proton magnetic resonance spectroscopy ((1H-MRS. Muscle biopsies for fiber typing were taken from 12 untrained males. PRINCIPAL FINDINGS: A significant positive correlation was found between muscle carnosine, measured by (1H-MRS, and percentage area occupied by type II fibers. Explosive athletes had ∼30% higher carnosine levels compared to a reference population, whereas it was ∼20% lower than normal in typical endurance athletes. Similar results were found in young talents and ex-athletes. When active elite runners were ranked according to their best running distance, a negative sigmoidal curve was found between logarithm of running distance and muscle carnosine. CONCLUSIONS: Muscle carnosine content shows a good reflection of the disciplines of elite track-and-field athletes and is able to distinguish between individual track running distances. The differences between endurance and sprint muscle types is also observed in young talents and former athletes, suggesting this characteristic is genetically determined and can be applied in early talent identification. This quick method provides a valid alternative for the muscle biopsy method. In addition, this technique may also contribute to the diagnosis and monitoring of many conditions and

Application of neutron transmutation doping method to initially p-type silicon material.

Science.gov (United States)

Kim, Myong-Seop; Kang, Ki-Doo; Park, Sang-Jun

2009-01-01

The neutron transmutation doping (NTD) method was applied to the initially p-type silicon in order to extend the NTD applications at HANARO. The relationship between the irradiation neutron fluence and the final resistivity of the initially p-type silicon material was investigated. The proportional constant between the neutron fluence and the resistivity was determined to be 2.3473x10(19)nOmegacm(-1). The deviation of the final resistivity from the target for almost all the irradiation results of the initially p-type silicon ingots was at a range from -5% to 2%. In addition, the burn-up effect of the boron impurities, the residual (32)P activity and the effect of the compensation characteristics for the initially p-type silicon were studied. Conclusively, the practical methodology to perform the neutron transmutation doping of the initially p-type silicon ingot was established.

A Jacobi-Davidson type method for the generalized singular value problem

NARCIS (Netherlands)

Hochstenbach, M.E.

2009-01-01

We discuss a new method for the iterative computation of some of the generalized singular values and vectors of a large sparse matrix. Our starting point is the augmented matrix formulation of the GSVD. The subspace expansion is performed by (approximately) solving a Jacobi–Davidson type correction

Removing tidal-period variations from time-series data using low-pass digital filters

Science.gov (United States)

Walters, Roy A.; Heston, Cynthia

1982-01-01

Several low-pass, digital filters are examined for their ability to remove tidal Period Variations from a time-series of water surface elevation for San Francisco Bay. The most efficient filter is the one which is applied to the Fourier coefficients of the transformed data, and the filtered data recovered through an inverse transform. The ability of the filters to remove the tidal components increased in the following order: 1) cosine-Lanczos filter, 2) cosine-Lanczos squared filter; 3) Godin filter; and 4) a transform fitter. The Godin fitter is not sufficiently sharp to prevent severe attenuation of 2–3 day variations in surface elevation resulting from weather events.

Solving Hammerstein Type Integral Equation by New Discrete Adomian Decomposition Methods

Directory of Open Access Journals (Sweden)

Huda O. Bakodah

2013-01-01

Full Text Available New discrete Adomian decomposition methods are presented by using some identified Clenshaw-Curtis quadrature rules. We investigate two mixed quadrature rules one of precision five and the other of precision seven. The first rule is formed by using the Fejér second rule of precision three and Simpson rule of precision three, while the second rule is formed by using the Fejér second rule of precision five and the Boole rule of precision five. Our methods were applied to a nonlinear integral equation of the Hammerstein type and some examples are given to illustrate the validity of our methods.

Matrix-type multiple reciprocity boundary element method for solving three-dimensional two-group neutron diffusion equations

International Nuclear Information System (INIS)

Itagaki, Masafumi; Sahashi, Naoki.

1997-01-01

The multiple reciprocity boundary element method has been applied to three-dimensional two-group neutron diffusion problems. A matrix-type boundary integral equation has been derived to solve the first and the second group neutron diffusion equations simultaneously. The matrix-type fundamental solutions used here satisfy the equation which has a point source term and is adjoint to the neutron diffusion equations. A multiple reciprocity method has been employed to transform the matrix-type domain integral related to the fission source into an equivalent boundary one. The higher order fundamental solutions required for this formulation are composed of a series of two types of analytic functions. The eigenvalue itself is also calculated using only boundary integrals. Three-dimensional test calculations indicate that the present method provides stable and accurate solutions for criticality problems. (author)

Solutions of First-Order Volterra Type Linear Integrodifferential Equations by Collocation Method

Directory of Open Access Journals (Sweden)

Olumuyiwa A. Agbolade

2017-01-01

Full Text Available The numerical solutions of linear integrodifferential equations of Volterra type have been considered. Power series is used as the basis polynomial to approximate the solution of the problem. Furthermore, standard and Chebyshev-Gauss-Lobatto collocation points were, respectively, chosen to collocate the approximate solution. Numerical experiments are performed on some sample problems already solved by homotopy analysis method and finite difference methods. Comparison of the absolute error is obtained from the present method and those from aforementioned methods. It is also observed that the absolute errors obtained are very low establishing convergence and computational efficiency.

Method to induce a conductivity type in a semiconductor

International Nuclear Information System (INIS)

Aboaf, J.A.; Sedgwick, T.O.

1977-01-01

The invention deals with a method in which one can produce a region of a desired type of conductivity in a semiconductor as is required for, e.g., field effect transistors. A metal oxide layer combination consisting of several metal oxides is thus deposited on the semiconductor. This is carried out according to the invention in a non-oxidizing atmosphere at temperatures at which the metal oxides do not diffuse into the semiconductor. The sign and degree of the induced conductivity type is adjusted by dosed depositing of the individual metal oxides related to one another. The gaseous metal oxides due to heating, mixed with a non-oxidizing gas are added in compounds to the semiconductor heated to depositing temperature. These compounds decompose at the depositing temperature into the metal oxide and a gaseous residual component. The semiconductor consists of silicon, and nitrogen is used as carrier gas; when depositing aluminium oxide, gaseous aluminium isopropoxide is added; when depositing silicon dioxide, gaseous tetra-ethyl orthosilicate. (ORU) [de

Method of the Determination of Exterior Orientation of Sensors in Hilbert Type Space.

Science.gov (United States)

Stępień, Grzegorz

2018-03-17

The following article presents a new isometric transformation algorithm based on the transformation in the newly normed Hilbert type space. The presented method is based on so-called virtual translations, already known in advance, of two relative oblique orthogonal coordinate systems-interior and exterior orientation of sensors-to a common, known in both systems, point. Each of the systems is translated along its axis (the systems have common origins) and at the same time the angular relative orientation of both coordinate systems is constant. The translation of both coordinate systems is defined by the spatial norm determining the length of vectors in the new Hilbert type space. As such, the displacement of two relative oblique orthogonal systems is reduced to zero. This makes it possible to directly calculate the rotation matrix of the sensor. The next and final step is the return translation of the system along an already known track. The method can be used for big rotation angles. The method was verified in laboratory conditions for the test data set and measurement data (field data). The accuracy of the results in the laboratory test is on the level of 10 -6 of the input data. This confirmed the correctness of the assumed calculation method. The method is a further development of the author's 2017 Total Free Station (TFS) transformation to several centroids in Hilbert type space. This is the reason why the method is called Multi-Centroid Isometric Transformation-MCIT. MCIT is very fast and enables, by reducing to zero the translation of two relative oblique orthogonal coordinate systems, direct calculation of the exterior orientation of the sensors.

Method of the Determination of Exterior Orientation of Sensors in Hilbert Type Space

Directory of Open Access Journals (Sweden)

Grzegorz Stępień

2018-03-01

Full Text Available The following article presents a new isometric transformation algorithm based on the transformation in the newly normed Hilbert type space. The presented method is based on so-called virtual translations, already known in advance, of two relative oblique orthogonal coordinate systems—interior and exterior orientation of sensors—to a common, known in both systems, point. Each of the systems is translated along its axis (the systems have common origins and at the same time the angular relative orientation of both coordinate systems is constant. The translation of both coordinate systems is defined by the spatial norm determining the length of vectors in the new Hilbert type space. As such, the displacement of two relative oblique orthogonal systems is reduced to zero. This makes it possible to directly calculate the rotation matrix of the sensor. The next and final step is the return translation of the system along an already known track. The method can be used for big rotation angles. The method was verified in laboratory conditions for the test data set and measurement data (field data. The accuracy of the results in the laboratory test is on the level of 10−6 of the input data. This confirmed the correctness of the assumed calculation method. The method is a further development of the author’s 2017 Total Free Station (TFS transformation to several centroids in Hilbert type space. This is the reason why the method is called Multi-Centroid Isometric Transformation—MCIT. MCIT is very fast and enables, by reducing to zero the translation of two relative oblique orthogonal coordinate systems, direct calculation of the exterior orientation of the sensors.

Low-lying Photoexcited States of a One-Dimensional Ionic Extended Hubbard Model

Science.gov (United States)

Yokoi, Kota; Maeshima, Nobuya; Hino, Ken-ichi

2017-10-01

We investigate the properties of low-lying photoexcited states of a one-dimensional (1D) ionic extended Hubbard model at half-filling. Numerical analysis by using the full and Lanczos diagonalization methods shows that, in the ionic phase, there exist low-lying photoexcited states below the charge transfer gap. As a result of comparison with numerical data for the 1D antiferromagnetic (AF) Heisenberg model, it was found that, for a small alternating potential Δ, these low-lying photoexcited states are spin excitations, which is consistent with a previous analytical study [Katsura et al., link ext-link-type="uri" xlink:href="https://doi.org/10.1103/PhysRevLett.103.177402" xlink:type="simple">Phys. Rev. Lett. 103, 177402 (2009)link>]. As Δ increases, the spectral intensity of the 1D ionic extended Hubbard model rapidly deviates from that of the 1D AF Heisenberg model and it is clarified that this deviation is due to the neutral-ionic domain wall, an elementary excitation near the neutral-ionic transition point.

A piezoelectric-based infinite stiffness generation method for strain-type load sensors

International Nuclear Information System (INIS)

Zhang, Shuwen; Shao, Shubao; Xu, Minglong; Chen, Jie

2015-01-01

Under certain application conditions like nanoindentation technology and the mechanical property measurement of soft materials, the elastic deformation of strain-type load sensors affects their displacement measurement accuracy. In this work, a piezoelectric-based infinite stiffness generation method for strain-type load sensors that compensates for this elastic deformation is presented. The piezoelectric material-based deformation compensation method is proposed. An Hottinger Baldwin Messtechnik GmbH (HBM) Z30A/50N load sensor acts as the foundation of the method presented in this work. The piezoelectric stack is selected based on its size, maximum deformation value, blocking force and stiffness. Then, a clamping and fixing structure is designed to integrate the HBM sensor with the piezoelectric stack. The clamping and fixing structure, piezoelectric stack and HBM load sensor comprise the sensing part of the enhanced load sensor. The load-deformation curve and the voltage-deformation curve of the enhanced load sensor are then investigated experimentally. Because a hysteresis effect exists in the piezoelectric structure, the relationship between the control signal and the deformation value of the piezoelectric material is nonlinear. The hysteresis characteristic in a quasi-static condition is studied and fitted using a quadratic polynomial, and its coefficients are analyzed to enable control signal prediction. Applied arithmetic based on current theory and the fitted data is developed to predict the control signal. Finally, the experimental effects of the proposed method are presented. It is shown that when a quasi-static load is exerted on this enhanced strain-type load sensor, the deformation is reduced and the equivalent stiffness appears to be almost infinite. (paper)

Gastrointestinal tract volume measurement method using a compound eye type endoscope

Science.gov (United States)

Yoshimoto, Kayo; Yamada, Kenji; Watabe, Kenji; Kido, Michiko; Nagakura, Toshiaki; Takahashi, Hideya; Nishida, Tsutomu; Iijima, Hideki; Tsujii, Masahiko; Takehara, Tetsuo; Ohno, Yuko

2015-03-01

We propose an intestine volume measurement method using a compound eye type endoscope. This method aims at assessment of the gastrointestinal function. Gastrointestinal diseases are mainly based on morphological abnormalities. However, gastrointestinal symptoms are sometimes apparent without visible abnormalities. Such diseases are called functional gastrointestinal disorder, for example, functional dyspepsia, and irritable bowel syndrome. One of the major factors for these diseases is abnormal gastrointestinal motility. For the diagnosis of the gastrointestinal tract, both aspects of organic and functional assessment is important. While endoscopic diagnosis is essential for assessment of organic abnormalities, three-dimensional information is required for assessment of the functional abnormalities. Thus, we proposed the three dimensional endoscope system using compound eye. In this study, we forces on the volume of gastrointestinal tract. The volume of the gastrointestinal tract is thought to related its function. In our system, we use a compound eye type endoscope system to obtain three-dimensional information of the tract. The volume can be calculated by integrating the slice data of the intestine tract shape using the obtained three-dimensional information. First, we evaluate the proposed method by known-shape tube. Then, we confirm that the proposed method can measure the tract volume using the tract simulated model. Our system can assess the wall of gastrointestinal tract directly in a three-dimensional manner. Our system can be used for examination of gastric morphological and functional abnormalities.

Creep-fatigue evaluation method for type 304 and 316FR SS

International Nuclear Information System (INIS)

Wada, Y.; Aoto, K.; Ueno, F.

1997-01-01

For long-term creep-fatigue of Type 304SS, intergranular failure is dominant in the case of significant life reduction. It is considered that this phenomenon has its origin in the grain boundary sliding as observed in cavity-type creep-rupture. Accordingly a simplified procedure to estimate intergranular damages caused by the grain boundary sliding is presented in connection with the secondary creep. In the conventional ductility exhaustion method, failure ductility includes plastic strain, and damage estimation is based on the primary creep strain, which is recoverable during strain cycling. Therefore the accumulated creep strain becomes a very large value, and quite different from grain boundary sliding strain. As a new concept on ductility exhaustion, the product of secondary creep rate and time to rupture (Monkman-Grant product) is applied to fracture ductility, and grain boundary sliding strain is approximately estimated using the accumulated secondary creep strain. From the new concept it was shown that the time fraction rule and the conventional ductility exhaustion method can be derived analytically. Furthermore an advanced method on cyclic stress relaxation was examined. If cyclic plastic strain hardening is softened thermally during strain hold, cyclic creep strain behaviour is also softened. An unrecoverable accumulated primary creep strain causes hardening of the primary creep, and the reduction of deformation resistance to the secondary creep caused by thermal softening accelerates grain boundary sliding rate. As the results creep damages depend not on applied stress but on effective stress. The new concept ductility exhaustion method based on the above consideration leads up to simplified time fraction estimation method only by continuous cycling fatigue and monotonic creep which was already developed in PNC for Monju design guide. This method gave good life prediction for the intergranular failure mode and is convenient for design use on the elastic

Quantum lattice model solver HΦ

Science.gov (United States)

Kawamura, Mitsuaki; Yoshimi, Kazuyoshi; Misawa, Takahiro; Yamaji, Youhei; Todo, Synge; Kawashima, Naoki

2017-08-01

HΦ [aitch-phi ] is a program package based on the Lanczos-type eigenvalue solution applicable to a broad range of quantum lattice models, i.e., arbitrary quantum lattice models with two-body interactions, including the Heisenberg model, the Kitaev model, the Hubbard model and the Kondo-lattice model. While it works well on PCs and PC-clusters, HΦ also runs efficiently on massively parallel computers, which considerably extends the tractable range of the system size. In addition, unlike most existing packages, HΦ supports finite-temperature calculations through the method of thermal pure quantum (TPQ) states. In this paper, we explain theoretical background and user-interface of HΦ. We also show the benchmark results of HΦ on supercomputers such as the K computer at RIKEN Advanced Institute for Computational Science (AICS) and SGI ICE XA (Sekirei) at the Institute for the Solid State Physics (ISSP).

Preliminary research on finite difference method to solve radon field distribution over sandstone-type uranium ore body

International Nuclear Information System (INIS)

Li Bihong; Shuang Na; Liu Qingcheng

2006-01-01

The principle of finite difference method is introduced, and the radon field distribution over sandstone-type uranium deposit is narrated. The radon field distribution theory equation is established. To solve radon field distribution equation using finite difference algorithm is to provide the value computational method for forward calculation about radon field over sandstone-type uranium mine. Study on 2-D finite difference method on the center of either high anomaly radon fields in view of the character of radon field over sandstone-type uranium provide an algorithm for further research. (authors)

Incrementally Detecting Change Types of Spatial Area Object: A Hierarchical Matching Method Considering Change Process

Directory of Open Access Journals (Sweden)

Yanhui Wang

2018-01-01

Full Text Available Detecting and extracting the change types of spatial area objects can track area objects’ spatiotemporal change pattern and provide the change backtracking mechanism for incrementally updating spatial datasets. To respond to the problems of high complexity of detection methods, high redundancy rate of detection factors, and the low automation degree during incrementally update process, we take into account the change process of area objects in an integrated way and propose a hierarchical matching method to detect the nine types of changes of area objects, while minimizing the complexity of the algorithm and the redundancy rate of detection factors. We illustrate in details the identification, extraction, and database entry of change types, and how we achieve a close connection and organic coupling of incremental information extraction and object type-of-change detection so as to characterize the whole change process. The experimental results show that this method can successfully detect incremental information about area objects in practical applications, with the overall accuracy reaching above 90%, which is much higher than the existing weighted matching method, making it quite feasible and applicable. It helps establish the corresponding relation between new-version and old-version objects, and facilitate the linked update processing and quality control of spatial data.

Application of the perturbation iteration method to boundary layer type problems.

Science.gov (United States)

Pakdemirli, Mehmet

2016-01-01

The recently developed perturbation iteration method is applied to boundary layer type singular problems for the first time. As a preliminary work on the topic, the simplest algorithm of PIA(1,1) is employed in the calculations. Linear and nonlinear problems are solved to outline the basic ideas of the new solution technique. The inner and outer solutions are determined with the iteration algorithm and matched to construct a composite expansion valid within all parts of the domain. The solutions are contrasted with the available exact or numerical solutions. It is shown that the perturbation-iteration algorithm can be effectively used for solving boundary layer type problems.

Method of operating BWR type reactors

International Nuclear Information System (INIS)

Sekimizu, Koichi

1980-01-01

Purpose: To enable reactor control depending on any demanded loads by performing control by the insertion of control rods in addition to the control by the regulation of the flow rate of the reactor core water at high power operation of a BWR type reactor. Method: The power is reduced at high power operation by decreasing the flow rate of reactor core water from the starting time for the power reduction and the flow rate is maintained after the time at which it reaches the minimum allowable flow rate. Then, the control rod is started to insert from the above time point to reduce the power to an aimed level. Thus, the insufficiency in the reactivity due to the increase in the xenon concentration can be compensated by the withdrawal of the control rods and the excess reactivity due to the decrease in the xenon concentration can be compensated by the insertion of the control rods, whereby the reactor power can be controlled depending on any demanded loads without deviating from the upper or lower limit for the flow rate of the reactor core water. (Moriyama, K.)

Bovine Papillomavirus in Brazil: Detection of Coinfection of Unusual Types by a PCR-RFLP Method

Directory of Open Access Journals (Sweden)

R. F. Carvalho

2013-01-01

Full Text Available Bovine papillomavirus (BPV is recognized as a causal agent of benign and malignant tumors in cattle. Thirteen types of BPV are currently characterized and classified into three distinct genera, associated with different pathological outcomes. The described BPV types as well as other putative ones have been demonstrated by molecular biology methods, mainly by the employment of degenerated PCR primers. Specifically, divergences in the nucleotide sequence of the L1 gene are useful for the identification and classification of new papillomavirus types. On the present work, a method based on the PCR-RFLP technique and DNA sequencing was evaluated as a screening tool, allowing for the detection of two relatively rare types of BPV in lesions samples from a six-year-old Holstein dairy cow, chronically affected with cutaneous papillomatosis. These findings point to the dissemination of BPVs with unclear pathogenic potential, since two relatively rare, new described BPV types, which were first characterized in Japan, were also detected in Brazil.

Homotopy perturbation method with Laplace Transform (LT-HPM) for solving Lane-Emden type differential equations (LETDEs).

Science.gov (United States)

Tripathi, Rajnee; Mishra, Hradyesh Kumar

2016-01-01

In this communication, we describe the Homotopy Perturbation Method with Laplace Transform (LT-HPM), which is used to solve the Lane-Emden type differential equations. It's very difficult to solve numerically the Lane-Emden types of the differential equation. Here we implemented this method for two linear homogeneous, two linear nonhomogeneous, and four nonlinear homogeneous Lane-Emden type differential equations and use their appropriate comparisons with exact solutions. In the current study, some examples are better than other existing methods with their nearer results in the form of power series. The Laplace transform used to accelerate the convergence of power series and the results are shown in the tables and graphs which have good agreement with the other existing method in the literature. The results show that LT-HPM is very effective and easy to implement.

Comparison of Molecular Typing Methods Useful for Detecting Clusters of Campylobacter jejuni and C. coli Isolates through Routine Surveillance

Science.gov (United States)

Taboada, Eduardo; Grant, Christopher C. R.; Blakeston, Connie; Pollari, Frank; Marshall, Barbara; Rahn, Kris; MacKinnon, Joanne; Daignault, Danielle; Pillai, Dylan; Ng, Lai-King

2012-01-01

Campylobacter spp. may be responsible for unreported outbreaks of food-borne disease. The detection of these outbreaks is made more difficult by the fact that appropriate methods for detecting clusters of Campylobacter have not been well defined. We have compared the characteristics of five molecular typing methods on Campylobacter jejuni and C. coli isolates obtained from human and nonhuman sources during sentinel site surveillance during a 3-year period. Comparative genomic fingerprinting (CGF) appears to be one of the optimal methods for the detection of clusters of cases, and it could be supplemented by the sequencing of the flaA gene short variable region (flaA SVR sequence typing), with or without subsequent multilocus sequence typing (MLST). Different methods may be optimal for uncovering different aspects of source attribution. Finally, the use of several different molecular typing or analysis methods for comparing individuals within a population reveals much more about that population than a single method. Similarly, comparing several different typing methods reveals a great deal about differences in how the methods group individuals within the population. PMID:22162562

A multicenter evaluation of genotypic methods for the epidemiologic typing of Legionella pneumophila serogroup 1

DEFF Research Database (Denmark)

Fry, Norman K.; Alexiou-Daniel, Stella; Bangsborg, Jette Marie

1999-01-01

OBJECTIVES: To compare genotypic methods for epidemiologic typing of Legionella pneumophila serogroup (sg) 1, in order to determine the best available method within Europe for implementation and standardization by members of the European Working Group on Legionella Infections. METHODS: Coded...

Fast Eigensolver for Computing 3D Earth's Normal Modes

Science.gov (United States)

Shi, J.; De Hoop, M. V.; Li, R.; Xi, Y.; Saad, Y.

2017-12-01

We present a novel parallel computational approach to compute Earth's normal modes. We discretize Earth via an unstructured tetrahedral mesh and apply the continuous Galerkin finite element method to the elasto-gravitational system. To resolve the eigenvalue pollution issue, following the analysis separating the seismic point spectrum, we utilize explicitly a representation of the displacement for describing the oscillations of the non-seismic modes in the fluid outer core. Effectively, we separate out the essential spectrum which is naturally related to the Brunt-Väisälä frequency. We introduce two Lanczos approaches with polynomial and rational filtering for solving this generalized eigenvalue problem in prescribed intervals. The polynomial filtering technique only accesses the matrix pair through matrix-vector products and is an ideal candidate for solving three-dimensional large-scale eigenvalue problems. The matrix-free scheme allows us to deal with fluid separation and self-gravitation in an efficient way, while the standard shift-and-invert method typically needs an explicit shifted matrix and its factorization. The rational filtering method converges much faster than the standard shift-and-invert procedure when computing all the eigenvalues inside an interval. Both two Lanczos approaches solve for the internal eigenvalues extremely accurately, comparing with the standard eigensolver. In our computational experiments, we compare our results with the radial earth model benchmark, and visualize the normal modes using vector plots to illustrate the properties of the displacements in different modes.

Combined Effects of Numerical Method Type and Time Step on Water Stressed Actual Crop ET

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B. Ghahraman

2016-02-01

Full Text Available Introduction: Actual crop evapotranspiration (Eta is important in hydrologic modeling and irrigation water management issues. Actual ET depends on an estimation of a water stress index and average soil water at crop root zone, and so depends on a chosen numerical method and adapted time step. During periods with no rainfall and/or irrigation, actual ET can be computed analytically or by using different numerical methods. Overal, there are many factors that influence actual evapotranspiration. These factors are crop potential evapotranspiration, available root zone water content, time step, crop sensitivity, and soil. In this paper different numerical methods are compared for different soil textures and different crops sensitivities. Materials and Methods: During a specific time step with no rainfall or irrigation, change in soil water content would be equal to evapotranspiration, ET. In this approach, however, deep percolation is generally ignored due to deep water table and negligible unsaturated hydraulic conductivity below rooting depth. This differential equation may be solved analytically or numerically considering different algorithms. We adapted four different numerical methods, as explicit, implicit, and modified Euler, midpoint method, and 3-rd order Heun method to approximate the differential equation. Three general soil types of sand, silt, and clay, and three different crop types of sensitive, moderate, and resistant under Nishaboor plain were used. Standard soil fraction depletion (corresponding to ETc=5 mm.d-1, pstd, below which crop faces water stress is adopted for crop sensitivity. Three values for pstd were considered in this study to cover the common crops in the area, including winter wheat and barley, cotton, alfalfa, sugar beet, saffron, among the others. Based on this parameter, three classes for crop sensitivity was considered, sensitive crops with pstd=0.2, moderate crops with pstd=0.5, and resistive crops with pstd=0

Mean Field Type Control with Congestion (II): An Augmented Lagrangian Method

Energy Technology Data Exchange (ETDEWEB)

Achdou, Yves, E-mail: achdou@ljll.univ-paris-diderot.fr; Laurière, Mathieu [Univ. Paris Diderot, Sorbonne Paris Cité, Laboratoire Jacques-Louis Lions, UMR 7598, UPMC, CNRS (France)

2016-12-15

This work deals with a numerical method for solving a mean-field type control problem with congestion. It is the continuation of an article by the same authors, in which suitably defined weak solutions of the system of partial differential equations arising from the model were discussed and existence and uniqueness were proved. Here, the focus is put on numerical methods: a monotone finite difference scheme is proposed and shown to have a variational interpretation. Then an Alternating Direction Method of Multipliers for solving the variational problem is addressed. It is based on an augmented Lagrangian. Two kinds of boundary conditions are considered: periodic conditions and more realistic boundary conditions associated to state constrained problems. Various test cases and numerical results are presented.

An Integrated Structural Strength Analysis Method for Spar Type Floating Wind Turbine

Institute of Scientific and Technical Information of China (English)

胡志强; 刘毅; 王晋

2016-01-01

An integrated structural strength analysis method for a Spar type floating wind turbine is proposed in this paper, and technical issues related to turbine structure modeling and stress combination are also addressed. The NREL-5MW “Hywind” Spar type wind turbine is adopted as study object. Time-domain dynamic coupled simulations are performed by a fully-coupled aero-hydro-servo-elastic tool, FAST, on the purpose of obtaining the dynamic characteristics of the floating wind turbine, and determining parameters for design load cases of finite element calculation. Then design load cases are identified, and finite element analyses are performed for these design load cases. The structural stresses due to wave-induced loads and wind-induced loads are calculated, and then combined to assess the structural strength of the floating wind turbine. The feasibility of the proposed structural strength analysis method for floating wind turbines is then validated.

Continuous method for refining sodium. [for use in LMFBR type reactors

Energy Technology Data Exchange (ETDEWEB)

Batoux, B; Laurent-Atthalin, A; Salmon, M

1973-11-16

The invention relates to a refining method according to which commercial sodium provides a high purity sodium with, in particular, a very small calcium content. The method consists in continuously feeding a predetermined amount of sodium peroxide into a sodium stream, mixing and causing said sodium peroxide to reach with sodium at an appropriate temperature, and, finally, separating the reaction products from sodium by decanting and filtering same. The thus obtained high purity sodium meets the requirements of atomic industries in particular, in view of its possible use as coolant in nuclear reactors of the ''breeder'' type.

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

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Francisco Alexandre P

2012-05-01

Full Text Available Abstract Background With the decrease of DNA sequencing costs, sequence-based typing methods are rapidly becoming the gold standard for epidemiological surveillance. These methods provide reproducible and comparable results needed for a global scale bacterial population analysis, while retaining their usefulness for local epidemiological surveys. Online databases that collect the generated allelic profiles and associated epidemiological data are available but this wealth of data remains underused and are frequently poorly annotated since no user-friendly tool exists to analyze and explore it. Results PHYLOViZ is platform independent Java software that allows the integrated analysis of sequence-based typing methods, including SNP data generated from whole genome sequence approaches, and associated epidemiological data. goeBURST and its Minimum Spanning Tree expansion are used for visualizing the possible evolutionary relationships between isolates. The results can be displayed as an annotated graph overlaying the query results of any other epidemiological data available. Conclusions PHYLOViZ is a user-friendly software that allows the combined analysis of multiple data sources for microbial epidemiological and population studies. It is freely available at http://www.phyloviz.net.

An Extended Affinity Propagation Clustering Method Based on Different Data Density Types

Directory of Open Access Journals (Sweden)

XiuLi Zhao

2015-01-01

Full Text Available Affinity propagation (AP algorithm, as a novel clustering method, does not require the users to specify the initial cluster centers in advance, which regards all data points as potential exemplars (cluster centers equally and groups the clusters totally by the similar degree among the data points. But in many cases there exist some different intensive areas within the same data set, which means that the data set does not distribute homogeneously. In such situation the AP algorithm cannot group the data points into ideal clusters. In this paper, we proposed an extended AP clustering algorithm to deal with such a problem. There are two steps in our method: firstly the data set is partitioned into several data density types according to the nearest distances of each data point; and then the AP clustering method is, respectively, used to group the data points into clusters in each data density type. Two experiments are carried out to evaluate the performance of our algorithm: one utilizes an artificial data set and the other uses a real seismic data set. The experiment results show that groups are obtained more accurately by our algorithm than OPTICS and AP clustering algorithm itself.

Molecular typing of uropathogenic E. coli strains by the ERIC-PCR method.

Science.gov (United States)

Ardakani, Maryam Afkhami; Ranjbar, Reza

2016-04-01

Escherichia coli (E. coli) is the most common cause of urinary infections in hospitals. The aim of this study was to evaluate the ERIC-PCR method for molecular typing of uropathogenic E. coli strains isolated from hospitalized patients. In a cross sectional study, 98 E. coli samples were collected from urine samples taken from patients admitted to Baqiyatallah Hospital from June 2014 to January 2015. The disk agar diffusion method was used to determine antibiotic sensitivity. DNA proliferation based on repetitive intergenic consensus was used to classify the E. coli strains. The products of proliferation were electrophoresed on 1.5% agarose gel, and their dendrograms were drawn. The data were analyzed by online Insillico software. The method used in this research proliferated numerous bands (4-17 bands), ranging from 100 to 3000 base pairs. The detected strains were classified into six clusters (E1-E6) with 70% similarity between them. In this study, uropathogenic E. coli strains belonged to different genotypic clusters. It was found that ERIC-PCR had good differentiation power for molecular typing of uropathogenic E. coli strains isolated from the patients in the study.

Gauss Seidel-type methods for energy states of a multi-component Bose Einstein condensate

Science.gov (United States)

Chang, Shu-Ming; Lin, Wen-Wei; Shieh, Shih-Feng

2005-01-01

In this paper, we propose two iterative methods, a Jacobi-type iteration (JI) and a Gauss-Seidel-type iteration (GSI), for the computation of energy states of the time-independent vector Gross-Pitaevskii equation (VGPE) which describes a multi-component Bose-Einstein condensate (BEC). A discretization of the VGPE leads to a nonlinear algebraic eigenvalue problem (NAEP). We prove that the GSI method converges locally and linearly to a solution of the NAEP if and only if the associated minimized energy functional problem has a strictly local minimum. The GSI method can thus be used to compute ground states and positive bound states, as well as the corresponding energies of a multi-component BEC. Numerical experience shows that the GSI converges much faster than JI and converges globally within 10-20 steps.

Correlation and agreement between eplet mismatches calculated using serological, low-intermediate and high resolution molecular human leukocyte antigen typing methods.

Science.gov (United States)

Fidler, Samantha; D'Orsogna, Lloyd; Irish, Ashley B; Lewis, Joshua R; Wong, Germaine; Lim, Wai H

2018-03-02

Structural human leukocyte antigen (HLA) matching at the eplet level can be identified by HLAMatchmaker, which requires the entry of four-digit alleles. The aim of this study was to evaluate the agreement between eplet mismatches calculated by serological and two-digit typing methods compared to high-resolution four-digit typing. In a cohort of 264 donor/recipient pairs, the evaluation of measurement error was assessed using intra-class correlation to confirm the absolute agreement between the number of eplet mismatches at class I (HLA-A, -B, C) and II loci (HLA-DQ and -DR) calculated using serological or two-digit molecular typing compared to four-digit molecular typing methods. The proportion of donor/recipient pairs with a difference of >5 eplet mismatches between the HLA typing methods was also determined. Intra-class correlation coefficients between serological and four-digit molecular typing methods were 0.969 (95% confidence intervals [95% CI] 0.960-0.975) and 0.926 (95% CI 0.899-0.944), respectively; and 0.995 (95% CI 0.994-0.996) and 0.993 (95% CI 0.991-0.995), respectively between two-digit and four-digit molecular typing methods. The proportion of donor/recipient pairs with a difference of >5 eplet mismatches at class I and II loci was 4% and 16% for serological versus four-digit molecular typing methods, and 0% and 2% for two-digit versus four-digit molecular typing methods, respectively. In this small predominantly Caucasian population, compared with serology, there is a high level of agreement in the number of eplet mismatches calculated using two-compared to four-digit molecular HLA-typing methods, suggesting that two-digit typing may be sufficient in determining eplet mismatch load in kidney transplantation.

Deep sequencing as a method of typing bluetongue virus isolates.

Science.gov (United States)

Rao, Pavuluri Panduranga; Reddy, Yella Narasimha; Ganesh, Kapila; Nair, Shreeja G; Niranjan, Vidya; Hegde, Nagendra R

2013-11-01

Bluetongue (BT) is an economically important endemic disease of livestock in tropics and subtropics. In addition, its recent spread to temperate regions like North America and Northern Europe is of serious concern. Rapid serotyping and characterization of BT virus (BTV) is an essential step in the identification of origin of the virus and for controlling the disease. Serotyping of BTV is typically performed by serum neutralization, and of late by nucleotide sequencing. This report describes the near complete genome sequencing and typing of two isolates of BTV using Illumina next generation sequencing platform. Two of the BTV RNAs were multiplexed with ten other unknown samples. Viral RNA was isolated and fragmented, reverse transcribed, the cDNA ends were repaired and ligated with a multiplex oligo. The genome library was amplified using primers complementary to the ligated oligo and subjected to single and paired end sequencing. The raw reads were assembled using a de novo method and reference-based assembly was performed based on the contig data. Near complete sequences of all segments of BTV were obtained with more than 20× coverage, and single read sequencing method was sufficient to identify the genotype and serotype of the virus. The two viruses used in this study were typed as BTV-1 and BTV-9E. Copyright © 2013 Elsevier B.V. All rights reserved.

A Recourse-Based Type-2 Fuzzy Programming Method for Water Pollution Control under Uncertainty

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Jing Liu

2017-11-01

Full Text Available In this study, a recourse-based type-2 fuzzy programming (RTFP method is developed for supporting water pollution control of basin systems under uncertainty. The RTFP method incorporates type-2 fuzzy programming (TFP within a two-stage stochastic programming with recourse (TSP framework to handle uncertainties expressed as type-2 fuzzy sets (i.e., a fuzzy set in which the membership function is also fuzzy and probability distributions, as well as to reflect the trade-offs between conflicting economic benefits and penalties due to violated policies. The RTFP method is then applied to a real case of water pollution control in the Heshui River Basin (a rural area of China, where chemical oxygen demand (COD, total nitrogen (TN, total phosphorus (TP, and soil loss are selected as major indicators to identify the water pollution control strategies. Solutions of optimal production plans of economic activities under each probabilistic pollutant discharge allowance level and membership grades are obtained. The results are helpful for the authorities in exploring the trade-off between economic objective and pollutant discharge decision-making based on river water pollution control.

A Novel Method for Age Estimation in Solar-Type Stars Through GALEX FUV Magnitudes

Science.gov (United States)

Ho, Kelly; Subramonian, Arjun; Smith, Graeme; Shouru Shieh

2018-01-01

Utilizing an inverse association known to exist between Galaxy Evolution Explorer (GALEX) far ultraviolet (FUV) magnitudes and the chromospheric activity of F, G, and K dwarfs, we explored a method of age estimation in solar-type stars through GALEX FUV magnitudes. Sample solar-type star data were collected from refereed publications and filtered by B-V and absolute visual magnitude to ensure similarities in temperature and luminosity to the Sun. We determined FUV-B and calculated a residual index Q for all the stars, using the temperature-induced upper bound on FUV-B as the fiducial. Plotting current age estimates for the stars against Q, we discovered a strong and significant association between the variables. By applying a log-linear transformation to the data to produce a strong correlation between Q and loge Age, we confirmed the association between Q and age to be exponential. Thus, least-squares regression was used to generate an exponential model relating Q to age in solar-type stars, which can be used by astronomers. The Q-method of stellar age estimation is simple and more efficient than existing spectroscopic methods and has applications to galactic archaeology and stellar chemical composition analysis.

Time-dependent B-spline R-matrix approach to double ionization of atoms by XUV laser pulses

Energy Technology Data Exchange (ETDEWEB)

Guan Xiaoxu; Zatsarinny, Oleg; Bartschat, Klaus [Department of Physics and Astronomy, Drake University, Des Moines, Iowa 50311 (United States); Noble, Clifford J [Computational Science and Engineering Department, Daresbury Laboratory, Warrington WA4 4AD (United Kingdom); Schneider, Barry I, E-mail: xiaoxu.guan@drake.ed, E-mail: klaus.bartschat@drake.ed, E-mail: bschneid@nsf.go [Physics Division, National Science Foundation, Arlington, Virgina 22230 (United States)

2009-11-01

We present an ab initio and non-perturbative time-dependent approach to the problem of double ionization of a general atom driven by intense XUV laser pulses. After using a highly flexible B-spline R-matrix method to generate field-free Hamiltonian and electric dipole matrices, the initial state is propagated in time using an efficient Arnoldi-Lanczos scheme. Example results for momentum and energy distributions of the two outgoing electrons in two-color pump-probe processes of He are presented.

Method of controlling power distribution in FBR type reactors

International Nuclear Information System (INIS)

Sawada, Shusaku; Kaneto, Kunikazu.

1982-01-01

Purpose: To attain the power distribution flattening with ease by obtaining a radial power distribution substantially in a constant configuration not depending on the burn-up cycle. Method: As the fuel burning proceeds, the radial power distribution is effected by the accumulation of fission products in the inner blancket fuel assemblies which varies the effect thereof as the neutron absorbing substances. Taking notice of the above fact, the power distribution is controlled in a heterogeneous FBR type reactor by varying the core residence period of the inner blancket assemblies in accordance with the charging density of the inner blancket assemblies in the reactor core. (Kawakami, Y.)

Comparison of methods for measuring flux gradients in type II superconductors

International Nuclear Information System (INIS)

Kroeger, D.M.; Koch, C.C.; Charlesworth, J.P.

1975-01-01

A comparison has been made of four methods of measuring the critical current density J/sub c/ in hysteretic type II superconductors, having a wide range of K and J/sub c/ values, in magnetic fields up to 70 kOe. Two of the methods, (a) resistive measurements and (b) magnetization measurements, were carried out in static magnetic fields. The other two methods involved analysis of the response of the sample to a small alternating field superimposed on the static field. The response was analyzed either (c) by measuring the third-harmonic content or (d) by integration of the waveform to obtain measure of flux penetration. The results are discussed with reference to the agreement between the different techniques and the consistency of the critical state hypothesis on which all these techniques are based. It is concluded that flux-penetration measurements by method (d) provide the most detailed information about J/sub c/ but that one must be wary of minor failures of the critical state hypothesis. Best results are likely to be obtained by using more than one method. (U.S.)

Analytic operator approach to fermionic lattice field theories

International Nuclear Information System (INIS)

Duncan, A.

1985-01-01

An analytic Lanczos algorithm previously used to extract the spectrum of bosonic lattice field theories in the continuum region is extended to theories with fermions. The method is illustrated in detail for the (1+1)-dimensional Gross-Neveu model. All parameters in the model (coupling, lattice size N, number of fermion flavors Nsub(F), etc.) appear explicitly in analytic formulas for matrix elements of the hamiltonian. The method is applied to the calculation of the collective field vacuum expectation value and the mass gap, and excellent agreement obtained with explicit results available from the large Nsub(F) solution of the model. (orig.)

A time-dependent B-spline R-matrix approach to double ionization of atoms by XUV laser pulses

Energy Technology Data Exchange (ETDEWEB)

Guan Xiaoxu; Zatsarinny, O; Noble, C J; Bartschat, K [Department of Physics and Astronomy, Drake University, Des Moines, IA 50311 (United States); Schneider, B I [Physics Division, National Science Foundation, Arlington, Virgina 22230 (United States)], E-mail: xiaoxu.guan@drake.edu, E-mail: oleg.zatsarinny@drake.edu, E-mail: cjn@maxnet.co.nz, E-mail: klaus.bartschat@drake.edu, E-mail: bschneid@nsf.gov

2009-07-14

We present an ab initio and non-perturbative time-dependent approach to the problem of double ionization of a general atom driven by intense XUV laser pulses. After using a highly flexible B-spline R-matrix method to generate field-free Hamiltonian and electric dipole matrices, the initial state is propagated in time using an efficient Arnoldi-Lanczos scheme. Test calculations for double ionization of He by a single laser pulse yield good agreement with benchmark results obtained with other methods. The method is then applied to two-colour pump-probe processes, for which momentum and energy distributions of the two outgoing electrons are presented.

The Prediction Methods for Potential Suspended Solids Clogging Types during Managed Aquifer Recharge

Directory of Open Access Journals (Sweden)

Xinqiang Du

2014-04-01

Full Text Available The implementation and development of managed aquifer recharge (MAR have been limited by the clogging attributed to physical, chemical, and biological reactions. In application field of MAR, physical clogging is usually the dominant type. Although numerous studies on the physical clogging mechanism during MAR are available, studies on the more detailed suspended clogging types and its prediction methods still remain few. In this study, a series of column experiments were inducted to show the process of suspended solids clogging process. The suspended solids clogging was divided into three types of surface clogging, inner clogging and mixed clogging based on the different clogging characteristics. Surface clogging indicates that the suspended solids are intercepted by the medium surface when suspended solids grain diameter is larger than pore diameter of infiltration medium. Inner clogging indicates that the suspended solids particles could transport through the infiltration medium. Mixed clogging refers to the comprehensive performance of surface clogging and inner clogging. Each suspended solids clogging type has the different clogging position, different changing laws of hydraulic conductivity and different deposition profile of suspended solids. Based on the experiment data, the ratio of effective medium pore diameter (Dp and median grain size of suspended solids (d50 was proposed as the judgment index for suspended solids clogging types. Surface clogging occurred while Dp/d50 was less than 5.5, inner clogging occurred while Dp/d50 was greater than 180, and mixed clogging occurred while Dp/d50 was between 5.5 and 180. In order to improve the judgment accuracy and applicability, Bayesian method, which considered more ratios of medium pore diameter (Dp and different level of grain diameter of suspended solids (di, were developed to predict the potential suspended solids types.

Shale characteristics impact on Nuclear Magnetic Resonance (NMR fluid typing methods and correlations

Directory of Open Access Journals (Sweden)

Mohamed Mehana

2016-06-01

Full Text Available The development of shale reservoirs has brought a paradigm shift in the worldwide energy equation. This entails developing robust techniques to properly evaluate and unlock the potential of those reservoirs. The application of Nuclear Magnetic Resonance techniques in fluid typing and properties estimation is well-developed in conventional reservoirs. However, Shale reservoirs characteristics like pore size, organic matter, clay content, wettability, adsorption, and mineralogy would limit the applicability of the used interpretation methods and correlation. Some of these limitations include the inapplicability of the controlling equations that were derived assuming fast relaxation regime, the overlap of different fluids peaks and the lack of robust correlation to estimate fluid properties in shale. This study presents a state-of-the-art review of the main contributions presented on fluid typing methods and correlations in both experimental and theoretical side. The study involves Dual Tw, Dual Te, and doping agent's application, T1-T2, D-T2 and T2sec vs. T1/T2 methods. In addition, fluid properties estimation such as density, viscosity and the gas-oil ratio is discussed. This study investigates the applicability of these methods along with a study of the current fluid properties correlations and their limitations. Moreover, it recommends the appropriate method and correlation which are capable of tackling shale heterogeneity.

Method of operating BWR type power plants

International Nuclear Information System (INIS)

Koyama, Kazuaki.

1981-01-01

Purpose: To improve the operation efficiency of BWR type reactors by reducing the time from the start-up of the reactor to the start-up of the turbine and electrical generator, as well as decrease the pressure difference in each of the sections of the pressure vessel to thereby extend its life span. Method: The operation comprises switching the nuclear reactor from the shutdown mode to the start-up mode, increasing the reactor power to a predetermined level lower than a rated power while maintaining the reactor pressure to a predetermined level lower than a rated pressure, starting up a turbine and an electrical generator in the state of the predetermined reactor pressure and the reactor power to connect the electrical generator to the power transmission system and, thereafter, increasing the reactor pressure and the reactor power to the predetermined rated pressure and rated power respectively. This can shorten the time from the start-up of the reactor to the start of the power transmission system, whereby the operation efficiency of the power plant can be improved. (Moriyama, K.)

On conjugate gradient type methods and polynomial preconditioners for a class of complex non-Hermitian matrices

Science.gov (United States)

Freund, Roland

1988-01-01

Conjugate gradient type methods are considered for the solution of large linear systems Ax = b with complex coefficient matrices of the type A = T + i(sigma)I where T is Hermitian and sigma, a real scalar. Three different conjugate gradient type approaches with iterates defined by a minimal residual property, a Galerkin type condition, and an Euclidian error minimization, respectively, are investigated. In particular, numerically stable implementations based on the ideas behind Paige and Saunder's SYMMLQ and MINRES for real symmetric matrices are proposed. Error bounds for all three methods are derived. It is shown how the special shift structure of A can be preserved by using polynomial preconditioning. Results on the optimal choice of the polynomial preconditioner are given. Also, some numerical experiments for matrices arising from finite difference approximations to the complex Helmholtz equation are reported.

A Control Method of Current Type Matrix Converter for Plasma Control Coil Power Supply

International Nuclear Information System (INIS)

Shimada, K.; Matsukawa, M.; Kurihara, K.; Jun-ichi Itoh

2006-01-01

In exploration to a tokamak fusion reactor, the control of plasma instabilities of high β plasma such as neoclassical tearing mode (NTM), resistive wall mode (RWM) etc., is the key issue for steady-state sustainment. One of the proposed methods to avoid suppressing RWM is that AC current having a phase to work for reduction the RWM growth is generated in a coil (sector coil) equipped spirally on the plasma vacuum vessel. To stabilize RWM, precise and fast real-time feedback control of magnetic field with proper amplitude and frequency is necessary. This implies that an appropriate power supply dedicated for such an application is expected to be developed. A matrix converter as one of power supply candidates for this purpose could provide a solution The matrix converter, categorized in an AC/AC direct converter composed of nine bi-directional current switches, has a great feature that a large energy storage element is unnecessary in comparison with a standard existing AC/AC indirect converter, which is composed of an AC/DC converter and a DC/AC inverter. It is also advantageous in cost and size of its applications. Fortunately, a voltage type matrix converter has come to be available at the market recently, while a current type matrix converter, which is advantageous for fast control of the large-inductance coil current, has been unavailable. On the background above mentioned, we proposed a new current type matrix converter and its control method applicable to a power supply with fast response for suppressing plasma instabilities. Since this converter is required with high accuracy control, the gate control method is adopted to three-phase switching method using middle phase to reduce voltage and current waveforms distortion. The control system is composed of VME-bus board with DSP (Digital Signal Processor) and FPGA (Field Programmable Gate Array) for high speed calculation and control. This paper describes the control method of a current type matrix converter

Crystallization of P-type ATPases by the High Lipid-Detergent (HiLiDe) Method

DEFF Research Database (Denmark)

Sitsel, Oleg; Wang, Kaituo; Liu, Xiangyu

2016-01-01

Determining structures of membrane proteins remains a significant challenge. A technique utilizing high lipid-detergent concentrations ("HiLiDe") circumvents the major bottlenecks of current membrane protein crystallization methods. During HiLiDe, the protein-lipid-detergent ratio is varied in a ...... crystallization techniques. The method has been applied with particular success to P-type ATPases....

Novel method of separating macroporous arrays from p-type silicon substrate

International Nuclear Information System (INIS)

Peng Bobo; Wang Fei; Liu Tao; Yang Zhenya; Wang Lianwei; Fu, Ricky K. Y.; Chu, Paul K.

2012-01-01

This paper presents a novel method to fabricate separated macroporous silicon using a single step of photo-assisted electrochemical etching. The method is applied to fabricate silicon microchannel plates in 100 mm p-type silicon wafers, which can be used as electron multipliers and three-dimensional Li-ion microbatteries. Increasing the backside illumination intensity and decreasing the bias simultaneously can generate additional holes during the electrochemical etching which will create lateral etching at the pore tips. In this way the silicon microchannel can be separated from the substrate when the desired depth is reached, then it can be cut into the desired shape by using a laser cutting machine. Also, the mechanism of lateral etching is proposed. (semiconductor materials)

Exact diagonalization of quantum lattice models on coprocessors

Science.gov (United States)

Siro, T.; Harju, A.

2016-10-01

We implement the Lanczos algorithm on an Intel Xeon Phi coprocessor and compare its performance to a multi-core Intel Xeon CPU and an NVIDIA graphics processor. The Xeon and the Xeon Phi are parallelized with OpenMP and the graphics processor is programmed with CUDA. The performance is evaluated by measuring the execution time of a single step in the Lanczos algorithm. We study two quantum lattice models with different particle numbers, and conclude that for small systems, the multi-core CPU is the fastest platform, while for large systems, the graphics processor is the clear winner, reaching speedups of up to 7.6 compared to the CPU. The Xeon Phi outperforms the CPU with sufficiently large particle number, reaching a speedup of 2.5.

A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain.

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Benjamin W Okaty

Full Text Available Expression profiling of restricted neural populations using microarrays can facilitate neuronal classification and provide insight into the molecular bases of cellular phenotypes. Due to the formidable heterogeneity of intermixed cell types that make up the brain, isolating cell types prior to microarray processing poses steep technical challenges that have been met in various ways. These methodological differences have the potential to distort cell-type-specific gene expression profiles insofar as they may insufficiently filter out contaminating mRNAs or induce aberrant cellular responses not normally present in vivo. Thus we have compared the repeatability, susceptibility to contamination from off-target cell-types, and evidence for stress-responsive gene expression of five different purification methods--Laser Capture Microdissection (LCM, Translating Ribosome Affinity Purification (TRAP, Immunopanning (PAN, Fluorescence Activated Cell Sorting (FACS, and manual sorting of fluorescently labeled cells (Manual. We found that all methods obtained comparably high levels of repeatability, however, data from LCM and TRAP showed significantly higher levels of contamination than the other methods. While PAN samples showed higher activation of apoptosis-related, stress-related and immediate early genes, samples from FACS and Manual studies, which also require dissociated cells, did not. Given that TRAP targets actively translated mRNAs, whereas other methods target all transcribed mRNAs, observed differences may also reflect translational regulation.

Weakly nonlocal symplectic structures, Whitham method and weakly nonlocal symplectic structures of hydrodynamic type

International Nuclear Information System (INIS)

Maltsev, A Ya

2005-01-01

We consider the special type of field-theoretical symplectic structures called weakly nonlocal. The structures of this type are, in particular, very common for integrable systems such as KdV or NLS. We introduce here the special class of weakly nonlocal symplectic structures which we call weakly nonlocal symplectic structures of hydrodynamic type. We investigate then the connection of such structures with the Whitham averaging method and propose the procedure of 'averaging' the weakly nonlocal symplectic structures. The averaging procedure gives the weakly nonlocal symplectic structure of hydrodynamic type for the corresponding Whitham system. The procedure also gives 'action variables' corresponding to the wave numbers of m-phase solutions of the initial system which give the additional conservation laws for the Whitham system

Near-Edge X-ray Absorption Fine Structure within Multilevel Coupled Cluster Theory.

Science.gov (United States)

Myhre, Rolf H; Coriani, Sonia; Koch, Henrik

2016-06-14

Core excited states are challenging to calculate, mainly because they are embedded in a manifold of high-energy valence-excited states. However, their locality makes their determination ideal for local correlation methods. In this paper, we demonstrate the performance of multilevel coupled cluster theory in computing core spectra both within the core-valence separated and the asymmetric Lanczos implementations of coupled cluster linear response theory. We also propose a visualization tool to analyze the excitations using the difference between the ground-state and excited-state electron densities.

Longitudinal analysis of the temporal evolution of Acinetobacter baumannii strains in Ohio, USA, by using rapid automated typing methods.

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Brooke K Decker

Full Text Available Genotyping methods are essential to understand the transmission dynamics of Acinetobacter baumannii. We examined the representative genotypes of A. baumannii at different time periods in select locations in Ohio, using two rapid automated typing methods: PCR coupled with electrospray ionization mass spectrometry (PCR/ESI-MS, a form of multi-locus sequence typing (MLST, and repetitive-sequence-based-PCR (rep-PCR. Our analysis included 122 isolates from 4 referral hospital systems, in 2 urban areas of Ohio. These isolates were associated with outbreaks at 3 different time periods (1996, 2000 and 2005-2007. Type assignments of PCR/ESI-MS and rep-PCR were compared to each other and to worldwide (WW clone types. The discriminatory power of each method was determined using the Simpson's index of diversity (DI. We observed that PCR/ESI-MS sequence type (ST 14, corresponding to WW clone 3, predominated in 1996, whereas ST 12 and 14 co-existed in the intermediate period (2000 and ST 10 and 12, belonging to WW clone 2, predominated more recently in 2007. The shift from WW clone 3 to WW clone 2 was accompanied by an increase in carbapenem resistance. The DI was approximately 0.74 for PCR/ESI-MS, 0.88 for rep-PCR and 0.90 for the combination of both typing methods. We conclude that combining rapid automated typing methods such as PCR/ESI-MS and rep-PCR serves to optimally characterize the regional molecular epidemiology of A. baumannii. Our data also sheds light on the changing sequence types in an 11 year period in Northeast Ohio.

Feasibility of the correlation curves method in calorimeters of different types

OpenAIRE

Grushevskaya, E. A.; Lebedev, I. A.; Fedosimova, A. I.

2014-01-01

The simulation of the development of cascade processes in calorimeters of different types for the implementation of energy measurement by correlation curves method, is carried out. Heterogeneous calorimeter has a significant transient effects, associated with the difference of the critical energy in the absorber and the detector. The best option is a mixed calorimeter, which has a target block, leading to the rapid development of the cascade, and homogeneous measuring unit. Uncertainties of e...

Newton-type methods for optimization and variational problems

CERN Document Server

Izmailov, Alexey F

2014-01-01

This book presents comprehensive state-of-the-art theoretical analysis of the fundamental Newtonian and Newtonian-related approaches to solving optimization and variational problems. A central focus is the relationship between the basic Newton scheme for a given problem and algorithms that also enjoy fast local convergence. The authors develop general perturbed Newtonian frameworks that preserve fast convergence and consider specific algorithms as particular cases within those frameworks, i.e., as perturbations of the associated basic Newton iterations. This approach yields a set of tools for the unified treatment of various algorithms, including some not of the Newton type per se. Among the new subjects addressed is the class of degenerate problems. In particular, the phenomenon of attraction of Newton iterates to critical Lagrange multipliers and its consequences as well as stabilized Newton methods for variational problems and stabilized sequential quadratic programming for optimization. This volume will b...

Optimization method of rod-type burnable poisons for nuclear designs of HTGRs

International Nuclear Information System (INIS)

Yamashita, Kiyonobu

1994-01-01

In block-type HTGRs, control rod insertion depths into cores had to be maintained as small as possible at full power operations, to avoid a fuel temperature rise. Thus, specifications (poison atom density (N BP ) and radius (r)) of rod-type burnable poisons (BPs) had to be optimized so that the effective multiplication factor (k eff ) would be constant at a minimum value throughout a planned burnup period. However, the optimization had been a time-consuming work until now since survey calculations had to be done for most possible combinations of N BP and r. To solve this problem, I have found a optimization method consisting of two steps. In the first step, approximation formulas describing a time-dependent relation among effective absorption cross sections (Σ aBP ), N BP and r are used to select promising combinations of N BP and r beforehand. In the second step, the best combination of N BP and r is determined by a comparison between Σ aBP of each promising combination and expected one. The number of survey calculations was reduced to about 1/10 by the optimization method. The change in k eff for 600 burnup days was reduced to 2%Δk by the method. Hence, it was made possible to operate reactors practically without inserting the control rods into cores. (author)

Strain typing of acetic acid bacteria responsible for vinegar production by the submerged elaboration method.

Science.gov (United States)

Fernández-Pérez, Rocío; Torres, Carmen; Sanz, Susana; Ruiz-Larrea, Fernanda

2010-12-01

Strain typing of 103 acetic acid bacteria isolates from vinegars elaborated by the submerged method from ciders, wines and spirit ethanol, was carried on in this study. Two different molecular methods were utilised: pulsed field gel electrophoresis (PFGE) of total DNA digests with a number of restriction enzymes, and enterobacterial repetitive intergenic consensus (ERIC) - PCR analysis. The comparative study of both methods showed that restriction fragment PFGE of SpeI digests of total DNA was a suitable method for strain typing and for determining which strains were present in vinegar fermentations. Results showed that strains of the species Gluconacetobacter europaeus were the most frequent leader strains of fermentations by the submerged method in the studied vinegars, and among them strain R1 was the predominant one. Results showed as well that mixed populations (at least two different strains) occurred in vinegars from cider and wine, whereas unique strains were found in spirit vinegars, which offered the most stressing conditions for bacterial growth. Copyright © 2010 Elsevier Ltd. All rights reserved.

Advanced Gastric Cancer: Differentiation of Borrmann Type IV versus Borrmann Type III by Two-Phased Dynamic Multi-Detector Row CT with Use of the Water Filling Method

Energy Technology Data Exchange (ETDEWEB)

Kim, Dae Jung; Yu, Jeong Sik; Lee, Sang Min; Kim, Joo Hee; Chung, Jae Joon; Kim, Ki Whang [Dept. of Radiology, Yonsei University College of Medicine, Gangnam Severance Hospital, Seoul (Korea, Republic of); Kang, Hae Youn [CHA Bundang Medical Center, CHA University, Seongnam (Korea, Republic of)

2013-02-15

To characterize Borrmann type IV from Borrmann type III advanced gastric cancer (AGC) by two-phased multi-detector row computed tomography (MDCT) using the water filling method. A total of 143 patients (pathologically confirmed Borrmann type III and IV - 100 and 43 patients), who underwent preoperative MDCT, were enrolled. Two radiologists, retrospectively and independently, determined tumor enhancement pattern using a 5-grade scale without clinical information. A weighted kappa test was applied for interobserver variability. The score of tumor enhancement pattern correlated with Borrmann type as determined by Spearman's correlation coefficient. The accuracy of differentiation of Borrmann type using MDCT was determined by receiver operating characteristic curves. Interobserver agreement (weighted kappa = 0.683) was substantial. The tumor enhancement pattern score showed a significant correlation with Borrmann type (reviewer 1, r = 0.591, p < 0.001; reviewer 2, r = 0.616, p < 0.001). The accuracy for differentiation of Borrmann type on MDCT was 0.86 (p < 0.001) in both reviewers. The sensitivity and specificity of the diagnosis of Borrmann type IV were 79% and 82% in reviewer 1, and 88% and 78% in reviewer 2, respectively. Dual-phased MDCT using the water filling method can differentiate between Borrmann type IV and III AGC with high accuracy.

Method of starting up PWR type reactor

International Nuclear Information System (INIS)

Kadokami, Akira; Ueno, Ryuji; Tsuge, Ayao; Onimura, Kichiro; Ochi, Tatsuya.

1988-01-01

Purpose: To start-up a PWR type reactor so as to effectively impregnate and concentrate corrosion inhibitors in intergranular corrosive faces. Method: Upon reactor start-up, after transferring from the warm zero output state to thermal power loaded state and injecting corrosion inhibitors, thermal power is returned to zero and, subsequently, increased up to a rated power. By selecting the thermal power upon injecting the corrosion inhibitors to a steam generator body, that is, by selecting a thermal power load that starts to boil in heat conduction tubes, feedwater in the clavis portion can be formed into an appropriate boiling convection and, accordingly, the corrosion inhibitors can be penetrated to the clevis portion at a higher rate and in a greater amount as compared with those under zero power condition. Subsequently, when the thermal power is reduced, a sub-cooled state is attained in the clevis portion, in which steams present in the intergranular corrosion faces in the heat conduction tubes are condensated. As a result, the corrosion inhibitors at high concentration are impregnated into the intergranular corrosive faces to provide excellent effects. (Kamimura, M.)

The development of the physical conceptions of the FBR type reactors control methods

International Nuclear Information System (INIS)

Matveev, V.I.; Ivanov, A.P.

1984-01-01

The physical concepts and specific problems of the control elements for LMFBR type reactors are discussed in this paper. Typical temperature coefficient of reactivity, its dependency on reactor power and burnup level are given. The authors give us the most advisable methods of the reactivity coefficient compensation

Anchorage of equipment - requirements and verification methods with emphasis on equipment of existing and constructed VVER-type nuclear power plants

International Nuclear Information System (INIS)

Masopust, R.

1999-01-01

Criteria and verification methods which are recommended for use in the capacity evaluation of anchorage of safety-related equipment at WWER-type nuclear power plants are presented. Developed in compliance with the relevant basic standards documents specifically for anchorage of WWER-type equipment components, the criteria and methods cover different types of anchor bolts and other anchorage elements which are typical of existing, constructed, or reconstructed WWER-type nuclear power plants

Inelastic analysis of piping systems. A beam-type method for creep and plasticity

International Nuclear Information System (INIS)

Roche, R.L.; Hoffmann, A.; Millard, A.

1979-01-01

Since many years, piping systems are designed and calculated under elasticity assumptions, using a beam-type method. Thus, the analysis of large systems may be performed at a relatively low cost, using a finite element program. However such a method can not account for inelastic phenomena like plastic deformations or creep. The application of refined three-dimensional shell type method is possible for local components such as curved sections but leads to prohibitive costs for complete piping systems. Therefore simplified methods have been developed, based on a 'global plasticity or creep model'. Following the conventional elastic approach, the pipe element is characterized by variables associated with the center line in the following way: generalized stresses are obtained by integration of local stresses giving way to hoop and tension stresses and to bending and torsional moments; the conjugated strains are identified with uniform hoop and longitudinal strains and variations in neutral axis curvatuves. For plasticity problems, the yield surface is defined by a diagonal quadratic function in terms of the generalized stresses and work hardening parameters. By addition of the Hill's principle and a hardening rule, the formulation is similar to the one commonly used in finite element method. Geometric non linearity due to important deformations of the cross section (often termed 'ovalization') may be treated simultaneously with material non linearity. For this purpose the displacement normal to the pipe surface is represented by trigonometric series expansion, the coefficients of which are determined by minimizing the strain energy over the cross section. The method presented is believed to be a simple economical and accurate tool, for dimensioning computations of large piping systems

Doing Very Big Calculations on Modest Size Computers: Reducing the Cost of Exact Diagonalization Using Singular Value Decomposition

International Nuclear Information System (INIS)

Weinstein, M.

2012-01-01

I will talk about a new way of implementing Lanczos and contraction algorithms to diagonalize lattice Hamiltonians that dramatically reduces the memory required to do the computation, without restricting to variational ansatzes. (author)

An overview of various typing methods for clinical epidemiology of the emerging pathogen Stenotrophomonas maltophilia.

Science.gov (United States)

Gherardi, Giovanni; Creti, Roberta; Pompilio, Arianna; Di Bonaventura, Giovanni

2015-03-01

Typing of bacterial isolates has been used for decades to study local outbreaks as well as in national and international surveillances for monitoring newly emerging resistant clones. Despite being recognized as a nosocomial pathogen, the precise modes of transmission of Stenotrophomonas maltophilia in health care settings are unknown. Due to the high genetic diversity observed among S. maltophilia clinical isolates, the typing results might be better interpreted if also environmental strains were included. This could help to identify preventative measures to be designed and implemented for decreasing the possibility of outbreaks and nosocomial infections. In this review, we attempt to provide an overview on the most common typing methods used for clinical epidemiology of S. maltophilia strains, such as PCR-based fingerprinting analyses, pulsed-field gel electrophoresis, multilocus variable number tandem repeat analysis, and multilocus sequence type. Application of the proteomic-based mass spectrometry by matrix-assisted laser desorption ionization-time of flight is also described. Improvements of typing methods already in use have to be achieved to facilitate S. maltophilia infection control at any level. In the near future, when novel Web-based platforms for rapid data processing and analysis will be available, whole genome sequencing technologies will likely become a highly powerful tool for outbreak investigations and surveillance studies in routine clinical practices. Copyright © 2015 Elsevier Inc. All rights reserved.

Accuracy of phenotypic methicillin susceptibility methods in the detection of Staphylococcus aureus isolates carrying different SCCmec types

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Pricilla DM de Matos

2010-11-01

Full Text Available A total of 138 isolates, 118 methicillin-resistant Staphylococcus aureus (MRSA isolates (staphylococcal cassette chromosome type II, 20 isolates, type III, 39 isolates and type IV, 59 isolates and 20 methicillin-sensitive S. aureus isolates were evaluated by phenotypic methods: cefoxitin and oxacillin disk diffusion (DD, agar dilution (AD, latex agglutination (LA, oxacillin agar screening (OAS and chromogenic agar detection. All methods showed 100% specificity, but only the DD tests presented 100% sensitivity. The sensitivity of the other tests ranged from 82.2% (OAS-98.3% (AD. The LA test showed the second lowest sensitivity (86.4%. The DD test showed high accuracy in the detection of MRSA isolates, but there was low precision in the detection of type IV isolates by the other tests, indicating that the genotypic characteristics of the isolates should be considered.

Accuracy of phenotypic methicillin susceptibility methods in the detection of Staphylococcus aureus isolates carrying different SCCmec types.

Science.gov (United States)

Matos, Pricilla D M de; Schuenck, Ricardo P; Cavalcante, Fernanda S; Caboclo, Roberta M F; Santos, Kátia Regina N dos

2010-11-01

A total of 138 isolates, 118 methicillin-resistant Staphylococcus aureus (MRSA) isolates (staphylococcal cassette chromosome type II, 20 isolates, type III, 39 isolates and type IV, 59 isolates) and 20 methicillin-sensitive S. aureus isolates were evaluated by phenotypic methods: cefoxitin and oxacillin disk diffusion (DD), agar dilution (AD), latex agglutination (LA), oxacillin agar screening (OAS) and chromogenic agar detection. All methods showed 100% specificity, but only the DD tests presented 100% sensitivity. The sensitivity of the other tests ranged from 82.2% (OAS)-98.3% (AD). The LA test showed the second lowest sensitivity (86.4%). The DD test showed high accuracy in the detection of MRSA isolates, but there was low precision in the detection of type IV isolates by the other tests, indicating that the genotypic characteristics of the isolates should be considered.

Parity among interpretation methods of MLEE patterns and disparity among clustering methods in epidemiological typing of Candida albicans.

Science.gov (United States)

Boriollo, Marcelo Fabiano Gomes; Rosa, Edvaldo Antonio Ribeiro; Gonçalves, Reginaldo Bruno; Höfling, José Francisco

2006-03-01

The typing of C. albicans by MLEE (multilocus enzyme electrophoresis) is dependent on the interpretation of enzyme electrophoretic patterns, and the study of the epidemiological relationships of these yeasts can be conducted by cluster analysis. Therefore, the aims of the present study were to first determine the discriminatory power of genetic interpretation (deduction of the allelic composition of diploid organisms) and numerical interpretation (mere determination of the presence and absence of bands) of MLEE patterns, and then to determine the concordance (Pearson product-moment correlation coefficient) and similarity (Jaccard similarity coefficient) of the groups of strains generated by three cluster analysis models, and the discriminatory power of such models as well [model A: genetic interpretation, genetic distance matrix of Nei (d(ij)) and UPGMA dendrogram; model B: genetic interpretation, Dice similarity matrix (S(D1)) and UPGMA dendrogram; model C: numerical interpretation, Dice similarity matrix (S(D2)) and UPGMA dendrogram]. MLEE was found to be a powerful and reliable tool for the typing of C. albicans due to its high discriminatory power (>0.9). Discriminatory power indicated that numerical interpretation is a method capable of discriminating a greater number of strains (47 versus 43 subtypes), but also pointed to model B as a method capable of providing a greater number of groups, suggesting its use for the typing of C. albicans by MLEE and cluster analysis. Very good agreement was only observed between the elements of the matrices S(D1) and S(D2), but a large majority of the groups generated in the three UPGMA dendrograms showed similarity S(J) between 4.8% and 75%, suggesting disparities in the conclusions obtained by the cluster assays.

Krylov solvers for linear algebraic systems

CERN Document Server

Broyden, Charles George

2004-01-01

The first four chapters of this book give a comprehensive and unified theory of the Krylov methods. Many of these are shown to be particular examples ofthe block conjugate-gradient algorithm and it is this observation thatpermits the unification of the theory. The two major sub-classes of thosemethods, the Lanczos and the Hestenes-Stiefel, are developed in parallel asnatural generalisations of the Orthodir (GCR) and Orthomin algorithms. Theseare themselves based on Arnoldi's algorithm and a generalised Gram-Schmidtalgorithm and their properties, in particular their stability properties,are det

Sub level open stoping mining method for the Remaja type deposits, Kalan, West Kalimantan, Indonesia

International Nuclear Information System (INIS)

Sumaryanto, A.

2014-01-01

According to historic drilling, probing and trenching, geologists previously assumed that the Eko Remaja type deposits belonged to the vein type family. To test this assumption, it was decided to drive a tunnel into Eko Remaja hill, in which eighteen mineralized intersections were discovered. A small mining test has been carried out in the area where the potentially mineable veins are concentrated. The idea was to check the continuity of the mineralization and assist in considering possible mining methods. Two methods were considered: the traditional and well known cut and fill method, or the long parallel holes method. This second method has not been used a lot up to now so was dropped. Regarding cut and fill testing, it was decided to test vein 179 from the tunnel level at 450-460 m above sea level. As a vein continuity check a ramp was driven in vein 169 and a drift in vein 169 at both levels 169 and 179. Vein 179 vein seemed rather regular at 450 level, but was quite different in the ramp in 169 vein and in the 179 drift at level 460. No continuity at all existed between the two levels or at level 460. Although good quality ore was found, it was considered that it could not be mined by the cut and fill method due to a lack of continuity. Hence the regular vein type concept was abandoned for the Eko Remaja type deposits, which looked more like some kind of “stockwork”, although not very complicated, because there are at the maximum three general directions of the mineralization. Fortunately, the major part of the reserves are concentrated in the four veins 157,169,179 and 184 which are rather close to each other. Although the quantity of waste will be important, diluted ore could still be extracted. Fortunately ore and the waste are quite distinctive in aspect, colour, shape, specific gravity and radioactivity. Therefore sorting is included in the present study, considering low capital and operating costs means and equipment. Two methods have been studied

Method for suppressing aliasing artifacts in R/R-type CT

International Nuclear Information System (INIS)

Mori, Issei; Igarashi, Narumi; Kazama, Masahiro; Taguchi, Katsuyuki

2003-01-01

The Quarter-Quarter (QQ) offset method is a well-established technique for suppressing aliasing artifacts in R/R-type CT. However, the perfect alignment required for the QQ offset is generally difficult to achieve in practice. Depending on the scanner design, it may even be impossible to achieve. Because of this imperfection, the images contain some aliasing artifacts. This problem is becoming more serious with the spread of multislice CT and the increasingly common use of thin-slice imaging, in which aliasing is inherently stronger. We propose a simple method that suppresses such aliasing artifacts effectively while minimizing degradation in the spatial resolution. We exploit the fact that the frequency transfer functions are different for the main spectrum and the aliasing spectrum when the back-projection offset is not identical to the sampling offset. The selection of an appropriate back-projection offset results in an effective notch filter against the aliasing spectrum and a wide-band filter for the main spectrum. The results of simulation experiments support our theory, and experiments using an actual machine have shown that the image quality obtained by our method is comparable to that of perfect QQ even when the QQ alignment conditions are severely violated. (author)

Wide band gap p-type windows by CBD and SILAR methods

Energy Technology Data Exchange (ETDEWEB)

Sankapal, B.R.; Goncalves, E.; Ennaoui, A.; Lux-Steiner, M.Ch

2004-03-22

Chemical deposition methods, namely, chemical bath deposition (CBD) and successive ionic layer adsorption and reaction (SILAR) have been used to deposit wide band gap p-type CuI and CuSCN thin films at room temperature (25 deg. C) in aqueous medium. Growth of these films requires the use of Cu (I) cations as a copper ions source. This is achieved by complexing Cu (II) ions using Na{sub 2}S{sub 2}O{sub 3}. The anion sources are either KI as iodine or KSCN as thiocyanide ions for CuI and CuSCN films, respectively. The preparative parameters are optimized with the aim to use these p-type materials as windows for solar cells. Different substrates are used, namely: glass, fluorine doped tin oxide coated glass and CuInS{sub 2} (CIS). X-ray diffraction, scanning electron microscopy, atomic force microscopy and optical absorption spectroscopy are used for structural, surface morphological and optical studies, and the results are discussed.

Efficacy of DNA typing as an accurate method in forensic medicine

Directory of Open Access Journals (Sweden)

Namazi H

2000-08-01

Full Text Available DNA typing is a new method with important applications in forensic medicine. In the present study, we evaluated application of DNA typing in Iran. Loci Hum LPL, Hum Tpox, Hum F13, Hum vw 31A, Hum TH01 and Hum FES/FPS of DNA short tandem repeats were studied. To determine sensitivity of the test, 85 mother-child couples (1020 chromosomes that were referred to DNA section of legal medicine organization of Iran were included and for determination of it's specificity 42 brother-sister couples (1200 chromosomes and 58 non-relative couples were examined. The results show lack of mutations in the studied loci and acceptable sensitivity of the test. Of 12 alleles of siblings, there were 2-6 differences, in contrast with 3-9 differences in non-relatives, so the test has 100% specificity in these loci. Considering polymorphism, power of exclusion of these 6 sites was 99%.

Wide band gap p-type windows by CBD and SILAR methods

International Nuclear Information System (INIS)

Sankapal, B.R.; Goncalves, E.; Ennaoui, A.; Lux-Steiner, M.Ch.

2004-01-01

Chemical deposition methods, namely, chemical bath deposition (CBD) and successive ionic layer adsorption and reaction (SILAR) have been used to deposit wide band gap p-type CuI and CuSCN thin films at room temperature (25 deg. C) in aqueous medium. Growth of these films requires the use of Cu (I) cations as a copper ions source. This is achieved by complexing Cu (II) ions using Na 2 S 2 O 3 . The anion sources are either KI as iodine or KSCN as thiocyanide ions for CuI and CuSCN films, respectively. The preparative parameters are optimized with the aim to use these p-type materials as windows for solar cells. Different substrates are used, namely: glass, fluorine doped tin oxide coated glass and CuInS 2 (CIS). X-ray diffraction, scanning electron microscopy, atomic force microscopy and optical absorption spectroscopy are used for structural, surface morphological and optical studies, and the results are discussed

Ranking the types of intersections for assessing the safety of pedestrians using TOPSIS method

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Călin ŞERBU

2014-11-01

Full Text Available Every year, more than 1500 accidents with pedestrian occur in the intersections in Romania. The number of accidents involving pedestrians in roundabouts intersections type increased approximately three times in 2013 compared to 2009 in Romania. This alarming increase led to the need of assessing the safety of pedestrians in intersections with or without safety systems. The safety systems for pedestrians and drivers include: the road marking, the pedestrian crossings marking, signal intersections with road signs, traffic lights or pedestrian safety barriers. We propose to assess the types of intersections with TOPSIS method.

Agreement between fasting and postprandial LDL cholesterol measured with 3 methods in patients with type 2 diabetes mellitus

DEFF Research Database (Denmark)

Lund, Søren S.; Petersen, Martin; Frandsen, Merete

2011-01-01

LDL cholesterol (LDL-C) is a modifiable cardiovascular disease risk factor. We used 3 LDL-C methods to study the agreement between fasting and postprandial LDL-C in type 2 diabetes (T2DM) patients.......LDL cholesterol (LDL-C) is a modifiable cardiovascular disease risk factor. We used 3 LDL-C methods to study the agreement between fasting and postprandial LDL-C in type 2 diabetes (T2DM) patients....

Motivational Interview Method Based on Transtheoretical Model of Health Behaviour Change in Type 2 Diabetes Mellitus

Directory of Open Access Journals (Sweden)

Alime Selcuk Tosun

2016-03-01

Full Text Available Precautions taken in early stages of diabetes mellitus are more beneficial in terms of quality of life. The risk of Type 2 diabetes mellitus has been shown to be reduced at rates up to 58% or its emergence may be delayed with healthy lifestyle changes in different studies. Transtheoretical model and motivational interview method are especially used to increase the adaptation of individuals to disease management and to change behaviours about diabetes mellitus for decreasing or preventing the harmful effects of diabetes mellitus in studies conducted with individuals with Type 2 diabetes mellitus. Interventions using motivational interview method based on transtheoretical model demonstrated that a general improvement in glycaemic control and in physical activity level can be achieved and significant progress has been made during the stage of change. Motivational interview method based on transtheoretical model is an easy and efficient counselling method to reach behavioural change. [Psikiyatride Guncel Yaklasimlar - Current Approaches in Psychiatry 2016; 8(1: 32-41

Approximate solution of the transport equation by methods of Galerkin type

International Nuclear Information System (INIS)

Pitkaranta, J.

1977-01-01

Questions of the existence, uniqueness, and convergence of approximate solutions of transport equations by methods of the Galerkin type (where trial and weighting functions are the same) are discussed. The results presented do not exclude the infinite-dimensional case. Two strategies can be followed in the variational approximation of the transport operator: one proceeds from the original form of the transport equation, while the other is based on the partially symmetrized equation. Both principles are discussed in this paper. The transport equation is assumed in a discretized multigroup form

Application of the functional integration method to the Dicke-type models

International Nuclear Information System (INIS)

Popov, V.N.; Fedotov, S.A.

1981-01-01

The asymptotics of the statistical model sum of the Dicke-type (Z/Z 6 ) is obtained and strictly proved at large N (N is an atomic number; Z is a statistical model sum; Z 0 is a statistical free system sum) using the functional integration method. The model with one bose-field mode is considered. A detailed proof is carried out at T > Tsub(c). An idea of the proof is planned and asymptotic formulae are presented for T < Tsub(c) and in the vicinity of Tsub(c)

Multilocus sequence typing (MLST methods for the emerging Campylobacter species C. hyointestinalis, C. lanienae, C. sputorum, C. concisus and C. curvus

Directory of Open Access Journals (Sweden)

William G Miller

2012-04-01

Full Text Available Multilocus sequence typing (MLST systems have been reported previously for multiple food- and food animal-associated Campylobacter species (e.g. C. jejuni, C. coli, C. lari and C. fetus to both differentiate strains and identify clonal lineages. These MLST methods focused primarily on campylobacters of human clinical (e.g. C. jejuni or veterinary (e.g. C. fetus relevance. However, other, emerging, Campylobacter species have been isolated increasingly from environmental, food animal or human clinical samples. We describe herein MLST methods for five emerging Campylobacter species: C. hyointestinalis, C. lanienae, C. sputorum, C. concisus and C. curvus. The concisus/curvus method uses the loci aspA, atpA, glnA, gltA, glyA, ilvD and pgm, whereas the other methods use the seven loci defined for C. jejuni (i.e., aspA, atpA, glnA, gltA, glyA, pgm, and tkt. Multiple food animal and human clinical C. hyointestinalis (n=48, C. lanienae (n=34 and C. sputorum (n=24 isolates were typed, along with 86 human clinical C. concisus and C. curvus isolates. A large number of sequence types (STs were identified using all four MLST methods. Similar to Campylobacter MLST methods described previously, these novel MLST methods identified mixed isolates containing two or more strains of the same species. Additionally, these methods speciated unequivocally isolates that had been typed ambiguously using other molecular-based speciation methods, such as 16S rDNA sequencing. Finally, the design of degenerate primer pairs for some methods permitted the typing of related species; for example, the C. hyointestinalis primer pairs could be used to type C. fetus strains. Therefore, these novel Campylobacter MLST methods will prove useful in speciating and differentiating strains of multiple, emerging Campylobacter species.

Novel One-Step Multiplex PCR-Based Method for HLA Typing and Preimplantational Genetic Diagnosis of -Thalassemia

Directory of Open Access Journals (Sweden)

Raquel M. Fernández

2013-01-01

Full Text Available Preimplantation genetic diagnosis (PGD of single gene disorders, combined with HLA matching (PGD-HLA, has emerged as a tool for couples at risk of transmitting a genetic disease to select unaffected embryos of an HLA tissue type compatible with that of an existing affected child. Here, we present a novel one-step multiplex PCR to genotype a spectrum of STRs to simultaneously perform HLA typing and PGD for -thalassemia. This method is being routinely used for PGD-HLA cycles in our department, with a genotyping success rate of 100%. As an example, we present the first successful PGD-HLA typing in Spain, which resulted in the birth of a boy and subsequent successful HSC transplantation to his affected brother, who is doing well 4 years following transplantation. The advantage of our method is that it involves only a round of single PCR for multiple markers amplification (up to 10 markers within the HLA and 6 markers at the -globin loci. This strategy has allowed us to considerably reduce the optimization of the PCR method for each specific PGD-HLA family as well as the time to obtain molecular results in each cycle.

Remote sensing technology prospecting methods of interlayer oxidation zone type sandstone uranium deposit in Yili basin

International Nuclear Information System (INIS)

Huang Xianfang; Huang Shutao; Pan Wei; Feng Jie; Liu Dechang; Zhang Jingbo; Xuan Yanxiu; Rui Benshan

1998-12-01

Taking Yili Basin as an example, remote sensing technology and method of interlayer oxidation zone type sandstone uranium deposit have systematically been summarized. Firstly, principle, methods and procedures of the second development of scientific experimental satellite photograph have been elaborated in detail. Three dimensional stereo simulation, display, and multi-parameters extraction have been recommended. Secondarily, the research is focused on prospective section image features in different type images and their geological implications and on establishing recognition keys of promising areas. Finally, based on above research results, three graded predictions, i.e. regional prospect, promising sections and favourable location in the deposit have been made step by step and reconnaissance and prospecting range are gradually reduced. The practice has indicated that breakthrough progress has been made in application to prospect prognosis of interlayer oxidation zone type sandstone uranium deposit and good verified results have been obtained

Real-Time PCR Typing of Escherichia coli Based on Multiple Single Nucleotide Polymorphisms--a Convenient and Rapid Method.

Science.gov (United States)

Lager, Malin; Mernelius, Sara; Löfgren, Sture; Söderman, Jan

2016-01-01

Healthcare-associated infections caused by Escherichia coli and antibiotic resistance due to extended-spectrum beta-lactamase (ESBL) production constitute a threat against patient safety. To identify, track, and control outbreaks and to detect emerging virulent clones, typing tools of sufficient discriminatory power that generate reproducible and unambiguous data are needed. A probe based real-time PCR method targeting multiple single nucleotide polymorphisms (SNP) was developed. The method was based on the multi locus sequence typing scheme of Institute Pasteur and by adaptation of previously described typing assays. An 8 SNP-panel that reached a Simpson's diversity index of 0.95 was established, based on analysis of sporadic E. coli cases (ESBL n = 27 and non-ESBL n = 53). This multi-SNP assay was used to identify the sequence type 131 (ST131) complex according to the Achtman's multi locus sequence typing scheme. However, it did not fully discriminate within the complex but provided a diagnostic signature that outperformed a previously described detection assay. Pulsed-field gel electrophoresis typing of isolates from a presumed outbreak (n = 22) identified two outbreaks (ST127 and ST131) and three different non-outbreak-related isolates. Multi-SNP typing generated congruent data except for one non-outbreak-related ST131 isolate. We consider multi-SNP real-time PCR typing an accessible primary generic E. coli typing tool for rapid and uniform type identification.

A new method for high yield purification of type beta transforming growth factor from human platelets

NARCIS (Netherlands)

Eijnden-van Raaij, A.J.M. van den; Koornneef, I.; Zoelen, E.J.J. van

1988-01-01

A new method was developed for the purification of type beta transforming growth factor from human platelets. This method is a three-step procedure including gel filtration, weak cation exchange HPLC and reverse phase HPLC. All steps are carried out at low pH using exclusively volatile acidic buffer

Ab-initio Hamiltonian approach to light nuclei and to quantum field ...

Indian Academy of Sciences (India)

A successful microscopic non-perturbative Hamiltonian approach to low- ... sparse matrix eigenvalue problem with the Lanczos algorithm on leadership class .... which allows for an arbitrary phase factor eiα that we have taken to be unity. The.

Development of a method for urine bikunin/urinary trypsin inhibitor (UTI) quantitation and structural characterization: Application to type 1 and type 2 diabetes.

Science.gov (United States)

Lepedda, Antonio Junior; Nieddu, Gabriele; Rocchiccioli, Silvia; Fresu, Pietro; De Muro, Pierina; Formato, Marilena

2013-12-01

Bikunin is a plasma proteinase inhibitor often associated with inflammatory conditions. It has a half-life of few minutes and it is rapidly excreted into urine as urinary trypsin inhibitor (UTI). UTI levels are usually low in healthy individuals but they can increase up to tenfold in both acute and chronic inflammatory diseases. This article describes a sensitive method for both direct UTI quantitation and structural characterization. UTI purification was performed by anion exchange micro-chromatography followed by SDS-PAGE. A calibration curve for protein quantitation was set up by using a purified UTI fraction. UTI identification and structural characterization was performed by Nano-LC-MS/MS analysis. The method was applied on urine samples from 9 patients with type 1 diabetes, 11 patients with type 2 diabetes, and 28 healthy controls, matched for age and sex with patients, evidencing higher UTI levels in both groups of patients with respect to controls (p UTI levels and age in each group tested. Owing to the elevated sensitivity and specificity, the described method allows UTI quantitation from very low quantities of specimen. Furthermore, as UTI concentration is normalized for creatinine level, the analysis could be also performed on randomly collected urine samples. Finally, MS/MS analysis prospects the possibility of characterizing PTM sites potentially able to affect UTI localization, function, and pathophysiological activity. Preliminary results suggest that UTI levels could represent a useful marker of chronic inflammatory condition in type 1 and 2 diabetes. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Comparison of a gel column blood typing method and a point-of-care cartridge for dog erythrocyte antigen 1.1.

Science.gov (United States)

Blois, Shauna L; Richardson, Danielle M; Abrams-Ogg, Anthony C G

2013-01-01

Blood typing for the presence of Dog Erythrocyte Antigen (DEA) 1.1 is recommended in all donor and recipient dogs prior to transfusion of blood products. The objective of this study was to determine if a point-of-care DEA 1.1 blood typing cartridge could be used in place of the gel column typing method. Detection of DEA 1.1 was performed using a laboratory-based gel column method and a point-of-care cartridge. A convenience sample of 30 healthy blood donors, 13 dogs with immune-mediated hemolytic anemia (IMHA) (3 of which had concurrent immune-mediated thrombocytopenia [IMT]), and 44 dogs with other diseases was included in the study. Agreement was observed between the tests for normal dogs and dogs with nonimmune-mediated disease in 74/74 cases. Two dogs in the IMHA group had indeterminate gel column blood typing results; 1 dog in this group had a negative gel column test result but a positive cartridge test result. There was good agreement between the 2 methods for normal dogs and dogs with nonimmune-mediated disease. Blood typing methods in dogs with IMHA should be further investigated. © Veterinary Emergency and Critical Care Society 2013.

Coupled cluster calculations of mean excitation energies of the noble gas atoms He, Ne and Ar and of the H2 molecule

DEFF Research Database (Denmark)

Sauer, Stephan P. A.; Ul Haq, Inam; Sabin, John R.

2014-01-01

by about 1%. For the two-electron systems He and H2, our CCSD results (for a Lanczos chain length equal to the full excitation space), I0 = 42:28 eV (Helium) and I0 = 19:62 eV (H2), correspond to full conguration interaction results and are therefore the exact, non-relativistic theoretical values......Using an asymmetric-Lanczos-chain algorithm for the calculation of the coupled cluster linear response functions at the CCSD and CC2 levels of approximation, we have calculated the mean excitation energies of the noble gases He, Ne and Ar, and of the hydrogen molecule H2. Convergence with respect...... for the mean excitation energy of these two systems within the Bethe theory for the chosen basis set and, in the case of H2, at the experimental equilibrium geometry....

Cardiac involvement of progressive muscular dystrophy (Becker type, Limb-girdle type and Fukuyama type) evaluated by radionuclide method

International Nuclear Information System (INIS)

Nagamachi, Shigeki; Inoue, Kenjiro; Jinnouchi, Seishi; Hoshi, Hiroaki; Ono, Seiji; Ohnishi, Takashi; Futami, Shigemi; Watanabe, Katsushi; Hayashi, Tohru

1994-01-01

Tl-201 SPECT and Tc-99m-Human serum albumin (HSA) multigated radionuclide ventriculography were performed on 11 patients with progressive muscular dystrophy (Becker type 2, Fukuyama type 2, Limb-girdle type 7) to evaluate myocardial involvement. Hypoperfusion was detected in 8 patients on Tl-201 SPECT. Decreases in both systolic function (left ventricular ejection fraction; LVEF) and diastolic function (peak filling rate; PFR) were also seen in these patients. A high incidence of myocardial involvement of these kinds of progressive muscular dystrophy was suggested. (author)

Cardiac involvement of progressive muscular dystrophy (Becker type, Limb-girdle type and Fukuyama type) evaluated by radionuclide method

Energy Technology Data Exchange (ETDEWEB)

Nagamachi, Shigeki; Inoue, Kenjiro; Jinnouchi, Seishi; Hoshi, Hiroaki; Ono, Seiji; Ohnishi, Takashi; Futami, Shigemi; Watanabe, Katsushi; Hayashi, Tohru [Miyazaki Medical Coll., Kiyotake (Japan)

1994-02-01

Tl-201 SPECT and Tc-99m-Human serum albumin (HSA) multigated radionuclide ventriculography were performed on 11 patients with progressive muscular dystrophy (Becker type 2, Fukuyama type 2, Limb-girdle type 7) to evaluate myocardial involvement. Hypoperfusion was detected in 8 patients on Tl-201 SPECT. Decreases in both systolic function (left ventricular ejection fraction; LVEF) and diastolic function (peak filling rate; PFR) were also seen in these patients. A high incidence of myocardial involvement of these kinds of progressive muscular dystrophy was suggested. (author).

A Comparison of Molecular Typing Methods Applied to Enterobacter cloacae complex: hsp60 Sequencing, Rep-PCR, and MLST

Directory of Open Access Journals (Sweden)

Roberto Viau

2017-02-01

Full Text Available Molecular typing using repetitive sequenced-based PCR (rep-PCR and hsp60 sequencing were applied to a collection of diverse Enterobacter cloacae complex isolates. To determine the most practical method for reference laboratories, we analyzed 71 E. cloacae complex isolates from sporadic and outbreak occurrences originating from 4 geographic areas. While rep-PCR was more discriminating, hsp60 sequencing provided a broader and a more objective geographical tracking method similar to multilocus sequence typing (MLST. In addition, we suggest that MLST may have higher discriminative power compared to hsp60 sequencing, although rep-PCR remains the most discriminative method for local outbreak investigations. In addition, rep-PCR can be an effective and inexpensive method for local outbreak investigation.

Employing a Monte Carlo algorithm in Newton-type methods for restricted maximum likelihood estimation of genetic parameters.

Directory of Open Access Journals (Sweden)

Kaarina Matilainen

Full Text Available Estimation of variance components by Monte Carlo (MC expectation maximization (EM restricted maximum likelihood (REML is computationally efficient for large data sets and complex linear mixed effects models. However, efficiency may be lost due to the need for a large number of iterations of the EM algorithm. To decrease the computing time we explored the use of faster converging Newton-type algorithms within MC REML implementations. The implemented algorithms were: MC Newton-Raphson (NR, where the information matrix was generated via sampling; MC average information(AI, where the information was computed as an average of observed and expected information; and MC Broyden's method, where the zero of the gradient was searched using a quasi-Newton-type algorithm. Performance of these algorithms was evaluated using simulated data. The final estimates were in good agreement with corresponding analytical ones. MC NR REML and MC AI REML enhanced convergence compared to MC EM REML and gave standard errors for the estimates as a by-product. MC NR REML required a larger number of MC samples, while each MC AI REML iteration demanded extra solving of mixed model equations by the number of parameters to be estimated. MC Broyden's method required the largest number of MC samples with our small data and did not give standard errors for the parameters directly. We studied the performance of three different convergence criteria for the MC AI REML algorithm. Our results indicate the importance of defining a suitable convergence criterion and critical value in order to obtain an efficient Newton-type method utilizing a MC algorithm. Overall, use of a MC algorithm with Newton-type methods proved feasible and the results encourage testing of these methods with different kinds of large-scale problem settings.

Klebsiella Typing

DEFF Research Database (Denmark)

Hansen, D S; Skov, R; Benedí, J.V.

2002-01-01

OBJECTIVE: To compare pulsed-field gel electrophoresis (PFGE) typing and O:K-serotyping of Klebsiella in two different epidemiological settings. METHODS: One hundred and four bacteremia isolates without known epidemiological relation and 47 isolates from an outbreak in a neonatal intensive care...... unit (NICU) were K-typed by countercurrent immunoelectrophoresis (CCIE), O-typed by an inhibition enzyme-linked immunosorbent assay method, and typed by pulsed-field gel electrophoresis (PFGE) using the restriction enzyme XbaI. RESULTS: Typing data for the 104 bacteremia isolates were compared...... with regard to typability, number of types, maximum number of isolates per type, and the Discriminative Index (DI). O-typing combined with K-typing (DI 0.98) as O:K-serotyping (DI 0.99) gave a very discriminative typing system, whereas O-typing alone was not very discriminative (DI 0.76). PFGE (DI 1...

Leakage detecting method and device for water tight vessel of wet-type container apparatus

International Nuclear Information System (INIS)

Tanaka, Yoshimi.

1995-01-01

The present invention provides a method of and a device for detecting leakage of a water tight vessel of a wet-type container apparatus for containing a reactor pressure vessel while immersing it water in a reactor container. Namely, in the wet-type container apparatus, the periphery of the pressure vessel is coated with a heat insulation material and the periphery of the heat insulation material is coated with a water tight vessel. The water tight vessel is immersed under water in the reactor container. As a method of detecting leakage of the wet-type container apparatus, gases mixed with helium are supplied into the water tight vessel at a pressure higher than the inner pressure of the reactor container at a lowest position of the reactor pressure vessel. A water level in the reactor container is determined so as to form a space at the top portion of the inside of the reactor container. The helium at the top portion is detected to monitor the leakage of the water tight vessel. With such procedures, even if the water tight vessel is ruptured at any position, helium mixed to the gases is released to water in the reactor container and rise up to the top space and detected by a helium leakage detection device. (I.S.)

Runge–Kutta type methods with special properties for the numerical integration of ordinary differential equations

International Nuclear Information System (INIS)

Kalogiratou, Z.; Monovasilis, Th.; Psihoyios, G.; Simos, T.E.

2014-01-01

In this work we review single step methods of the Runge–Kutta type with special properties. Among them are methods specially tuned to integrate problems that exhibit a pronounced oscillatory character and such problems arise often in celestial mechanics and quantum mechanics. Symplectic methods, exponentially and trigonometrically fitted methods, minimum phase-lag and phase-fitted methods are presented. These are Runge–Kutta, Runge–Kutta–Nyström and Partitioned Runge–Kutta methods. The theory of constructing such methods is given as well as several specific methods. In order to present the performance of the methods we have tested 58 methods from all categories. We consider the two dimensional harmonic oscillator, the two body problem, the pendulum problem and the orbital problem studied by Stiefel and Bettis. Also we have tested the methods on the computation of the eigenvalues of the one dimensional time independent Schrödinger equation with the harmonic oscillator, the doubly anharmonic oscillator and the exponential potentials

Arbitrarily primed PCR- A rapid and simple method for typing of leptospiral serovars

Directory of Open Access Journals (Sweden)

Ramadass P

2002-01-01

Full Text Available PURPOSE: To investigate the use of arbitrarily primed polymerase chain reaction (AP-PCR for typing of leptospiral serovars. METHODS: AP-PCR was adopted for identification of laboratory strains of leptospires and leptospiral cultures at serovar level. A primer of 12 bp was used for amplifying DNA of 13 laboratory strains of leptospires as well as culture pellets of leptospires. RESULTS: Each serovar produced distinct DNA fingerprint which was characteristic for each serovar. These patterns were used for typing of 81 serum culture samples obtained from human leptospiral cases. Of these samples, 39 could be typed based on AP-PCR fingerprints belonging to serovars autumnalis, pomona, canicola, javanica, icterohaemorrhagiae, patoc and pyrogenes. These results were confirmed by RAPD fingerprinting of the DNA samples of the respective leptospiral serovars after culturing -FNx01them in EMJH media. One of the important findings of this work was that straight culture sample could be used for AP-PCR assay, without purification of DNA. By having more number of AP-PCR reference fingerprints, more serovars could be typed. CONCLUSIONS: AP-PCR technique provides great potential for simple and rapid identification of leptospires at serovar level, which could be useful in molecular epidemiological studies of leptospirosis.

Many-body orthogonal polynomial systems

International Nuclear Information System (INIS)

Witte, N.S.

1997-03-01

The fundamental methods employed in the moment problem, involving orthogonal polynomial systems, the Lanczos algorithm, continued fraction analysis and Pade approximants has been combined with a cumulant approach and applied to the extensive many-body problem in physics. This has yielded many new exact results for many-body systems in the thermodynamic limit - for the ground state energy, for excited state gaps, for arbitrary ground state avenges - and are of a nonperturbative nature. These results flow from a confluence property of the three-term recurrence coefficients arising and define a general class of many-body orthogonal polynomials. These theorems constitute an analytical solution to the Lanczos algorithm in that they are expressed in terms of the three-term recurrence coefficients α and β. These results can also be applied approximately for non-solvable models in the form of an expansion, in a descending series of the system size. The zeroth order order this expansion is just the manifestation of the central limit theorem in which a Gaussian measure and hermite polynomials arise. The first order represents the first non-trivial order, in which classical distribution functions like the binomial distributions arise and the associated class of orthogonal polynomials are Meixner polynomials. Amongst examples of systems which have infinite order in the expansion are q-orthogonal polynomials where q depends on the system size in a particular way. (author)

Method of freezing type dismantling for wasted reactors

International Nuclear Information System (INIS)

Tatsumi, Toshiyuki.

1985-01-01

Purpose: To enable to operate a cutting device in the air by placing a working table on ice while utilizing the ice as radiation shielding materials thereby prevent the diffusion of air contaminations. Method: Upon dismantling a BWR type reactor, ice is packed into a reactor container and a pressure vessel and frozen state is maintained by cooling coils disposed to the outer circumference of the pressure vessel. Then, an airtight hood is covered over the pressure vessel and a working table is rotatably disposed therein. Upon working, when the upper layer ice is melted by a heat pump and discharged, the airtight hood is lowered to a predetermined level. After freezing the melted portion again at the lowered level, cutting work is conducted by an operator in the hood. The cut pieces are conveyed after hoisting the airtight hood by a crane. The pressure vessel is dismantled by repeating the foregoing procedures. In this way, cut pieces can be recovered without falling them to the reactor bottom as in the conventional work in water. In addition, since the procedures are conducted while covering the airtight hood, diffusion of air contaminations can be prevented. (Kamimura, M.)

High-Speed Coating Method for Photovoltaic Textiles with Closed-Type Die Coater

Science.gov (United States)

Imai, Takahiko; Shibayama, Norihisa; Takamatsu, Seiichi; Shiraishi, Kenji; Marumoto, Kazuhiro; Itoh, Toshihiro

2013-06-01

We developed a closed-type die-coating method to fabricate thin films for electronic devices. We succeeded in the die-coating of poly(3,4-ethylenedioxythiophene):poly(styrene sulfonate) (PEDOT:PSS) water dispersions and regioregular poly(3-hexylthiophene):[6,6]-phenyl C61-butyric acid methyl ester (P3HT:PCBM) solution to fabricate thin films of these organic materials with extremely high speeds of 5 and 20 m/min, respectively. The film thicknesses were evaluated by cross-sectional scanning electron microscopy (SEM). The deviations of the film thicknesses from our target values were less than 5%. We fabricated Al/P3HT:PCBM/PEDOT:PSS/indium tin oxide (ITO)/poly(ethylene terephthalate) (PET) textiles as an example of an application of the method, and the photovoltaic characteristic of the devices was confirmed.

Performance of Firth-and logF-type penalized methods in risk prediction for small or sparse binary data.

Science.gov (United States)

Rahman, M Shafiqur; Sultana, Mahbuba

2017-02-23

When developing risk models for binary data with small or sparse data sets, the standard maximum likelihood estimation (MLE) based logistic regression faces several problems including biased or infinite estimate of the regression coefficient and frequent convergence failure of the likelihood due to separation. The problem of separation occurs commonly even if sample size is large but there is sufficient number of strong predictors. In the presence of separation, even if one develops the model, it produces overfitted model with poor predictive performance. Firth-and logF-type penalized regression methods are popular alternative to MLE, particularly for solving separation-problem. Despite the attractive advantages, their use in risk prediction is very limited. This paper evaluated these methods in risk prediction in comparison with MLE and other commonly used penalized methods such as ridge. The predictive performance of the methods was evaluated through assessing calibration, discrimination and overall predictive performance using an extensive simulation study. Further an illustration of the methods were provided using a real data example with low prevalence of outcome. The MLE showed poor performance in risk prediction in small or sparse data sets. All penalized methods offered some improvements in calibration, discrimination and overall predictive performance. Although the Firth-and logF-type methods showed almost equal amount of improvement, Firth-type penalization produces some bias in the average predicted probability, and the amount of bias is even larger than that produced by MLE. Of the logF(1,1) and logF(2,2) penalization, logF(2,2) provides slight bias in the estimate of regression coefficient of binary predictor and logF(1,1) performed better in all aspects. Similarly, ridge performed well in discrimination and overall predictive performance but it often produces underfitted model and has high rate of convergence failure (even the rate is higher than that

Review and International Recommendation of Methods for Typing Neisseria gonorrhoeae Isolates and Their Implications for Improved Knowledge of Gonococcal Epidemiology, Treatment, and Biology

Science.gov (United States)

Unemo, Magnus; Dillon, Jo-Anne R.

2011-01-01

Summary: Gonorrhea, which may become untreatable due to multiple resistance to available antibiotics, remains a public health problem worldwide. Precise methods for typing Neisseria gonorrhoeae, together with epidemiological information, are crucial for an enhanced understanding regarding issues involving epidemiology, test of cure and contact tracing, identifying core groups and risk behaviors, and recommending effective antimicrobial treatment, control, and preventive measures. This review evaluates methods for typing N. gonorrhoeae isolates and recommends various methods for different situations. Phenotypic typing methods, as well as some now-outdated DNA-based methods, have limited usefulness in differentiating between strains of N. gonorrhoeae. Genotypic methods based on DNA sequencing are preferred, and the selection of the appropriate genotypic method should be guided by its performance characteristics and whether short-term epidemiology (microepidemiology) or long-term and/or global epidemiology (macroepidemiology) matters are being investigated. Currently, for microepidemiological questions, the best methods for fast, objective, portable, highly discriminatory, reproducible, typeable, and high-throughput characterization are N. gonorrhoeae multiantigen sequence typing (NG-MAST) or full- or extended-length porB gene sequencing. However, pulsed-field gel electrophoresis (PFGE) and Opa typing can be valuable in specific situations, i.e., extreme microepidemiology, despite their limitations. For macroepidemiological studies and phylogenetic studies, DNA sequencing of chromosomal housekeeping genes, such as multilocus sequence typing (MLST), provides a more nuanced understanding. PMID:21734242

A basic radiation-education method using a handy-type cloud chamber and natural radiation sources

International Nuclear Information System (INIS)

Kushita, K. N.

2010-10-01

Nuclear human resources development becomes increasingly important due to the world trend of expanding nuclear energy utilization in this century. At the Nuclear Human Resource Development Center of the Japan Atomic Energy Agency, many kinds of nuclear and radiation education have been conducted consistently and continuously through its half-century history though having several organizational changes. High level education is required for the specialists of nuclear technology including nuclear power plants operators and engineers, while basic knowledge on nuclear energy and, specially, on radiations and radioisotopes should be given to school students and public. Besides lectures on radiation and radioisotopes, some basic experiments are useful to understand what are radiations and radioisotopes. One of such basic experiments is the cloud chamber experiment. It is a great fun and excitement even for small children as one can actually see the radiation tracks by his/her naked eyes at hand. While there are many types of cloud chambers, we have developed a new-type cloud chamber to use for the radiation education and training s. Using the new-type cloud chamber, we have further developed a new method of this experiment so that the participants can more deeply understand the phenomena and the nature of radiation and radioisotopes. In this method, using a radiation source of natural uranium ore and gaseous radiation source containing Rn-220 obtained from thorium-containing material, they not only observe the radiation tracks but also measure the length and count the number of the tracks. Then they can calculate the energy of the radiation (alpha ray) and can estimate the half-life of the radioisotope (Rn-220). This method can be applied for high-school and general university students as well as for the public as a useful and effective method in the radiation education. (Author)

A basic radiation-education method using a handy-type cloud chamber and natural radiation sources

Energy Technology Data Exchange (ETDEWEB)

Kushita, K. N., E-mail: Kushita.kouhei@iaea.go.j [Japan Atomic Energy Agency, Nuclear Human Resource Development Center, 2-4 Shirakata-Shirane, Tokai, Naka, Ibaraki 309-1195 (Japan)

2010-10-15

Nuclear human resources development becomes increasingly important due to the world trend of expanding nuclear energy utilization in this century. At the Nuclear Human Resource Development Center of the Japan Atomic Energy Agency, many kinds of nuclear and radiation education have been conducted consistently and continuously through its half-century history though having several organizational changes. High level education is required for the specialists of nuclear technology including nuclear power plants operators and engineers, while basic knowledge on nuclear energy and, specially, on radiations and radioisotopes should be given to school students and public. Besides lectures on radiation and radioisotopes, some basic experiments are useful to understand what are radiations and radioisotopes. One of such basic experiments is the cloud chamber experiment. It is a great fun and excitement even for small children as one can actually see the radiation tracks by his/her naked eyes at hand. While there are many types of cloud chambers, we have developed a new-type cloud chamber to use for the radiation education and training s. Using the new-type cloud chamber, we have further developed a new method of this experiment so that the participants can more deeply understand the phenomena and the nature of radiation and radioisotopes. In this method, using a radiation source of natural uranium ore and gaseous radiation source containing Rn-220 obtained from thorium-containing material, they not only observe the radiation tracks but also measure the length and count the number of the tracks. Then they can calculate the energy of the radiation (alpha ray) and can estimate the half-life of the radioisotope (Rn-220). This method can be applied for high-school and general university students as well as for the public as a useful and effective method in the radiation education. (Author)

A reliable combination method to identification and typing of epidemic and endemic clones among clinical isolates of Acinetobacter baumannii.

Science.gov (United States)

Piran, Arezoo; Shahcheraghi, Fereshteh; Solgi, Hamid; Rohani, Mahdi; Badmasti, Farzad

2017-10-01

The multi-drug resistant (MDR) Acinetobacter baumannii as an important nosocomial pathogen has emerged a global health concern in recent years. In this study, we applied three easier, faster, and cost-effective methods including PCR-based open reading frames (ORFs) typing, sequence typing of bla OXA-51-like and RAPD-PCR method to rapid typing of A. baumannii strains. Taken together in the present study the results of ORFs typing, PCR-sequencing of bla OXA-51-like genes and MLST sequence typing revealed there was a high prevalence (62%, 35/57) of ST2 as international and successful clone which detected among clinical isolates of multi-drug resistant A. baumannii with ORF pattern B and bla OXA-66 gene. Only 7% (4/57) of MDR isolates belonged to ST1 with ORF pattern A and bla OXA-69 gene. Interestingly, we detected singleton ST513 (32%, 18/57) that encoded bla OXA-90 and showed the ORF pattern H as previously isolated in Middle East. Moreover, our data showed RAPD-PCR method can detect divergent strains of the STs. The Cl-1, Cl-2, Cl-3, Cl-4, Cl-10, Cl-11, Cl-12, Cl-13 and Cl-14 belonged to ST2. While the Cl-6, Cl-7, Cl-8 and Cl-9 belonged to ST513. Only Cl-5 belonged to ST1. It seems that the combination of these methods have more discriminatory than any method separately and could be effectively applied to rapid detection of the clonal complex (CC) of A. baumannii strains without performing of MLST or PFGE. Copyright © 2017 Elsevier B.V. All rights reserved.

Supplymentary type semiconductor device and manufacturing method. Soho gata handotai sochi oyobi sono seizo hoho

Energy Technology Data Exchange (ETDEWEB)

Uno, Masaaki

1990-01-08

As a supplementary type semiconductor device has a complicated structure, it is extremely difficult to construct it in a three dimensional structure. This invention aims to reduce its occupying area by forming p-channel and n-channel transistors in a solid structure; moreover in an easy method of production. In other words, an opening is made in the element-forming region of a semiconductor substrate, forming a gate-insulation film on each of the p-type and n-type semiconductors which are exposed on the two facing surfaces; on it formed a gate electrode; p-type semiconductor surface is used as a channel domain; a drain region of n-channel transistor on one surface and a source region on another surface; the n-type semiconductor surface corresponding to the gate electrode is used as a channel region; a source region of the n-channel transistor is formed on the same surface and the drain region on the substrate surface. Occupied area is thus made less and the production gets easier. 20 figs.

Efficient generalized cross-validation with applications to parametric image restoration and resolution enhancement.

Science.gov (United States)

Nguyen, N; Milanfar, P; Golub, G

2001-01-01

In many image restoration/resolution enhancement applications, the blurring process, i.e., point spread function (PSF) of the imaging system, is not known or is known only to within a set of parameters. We estimate these PSF parameters for this ill-posed class of inverse problem from raw data, along with the regularization parameters required to stabilize the solution, using the generalized cross-validation method (GCV). We propose efficient approximation techniques based on the Lanczos algorithm and Gauss quadrature theory, reducing the computational complexity of the GCV. Data-driven PSF and regularization parameter estimation experiments with synthetic and real image sequences are presented to demonstrate the effectiveness and robustness of our method.

Path integral solutions of the master equation. [Lagrangian function, Ehrenfest-type theorem, Cauchy method, inverse functions

Energy Technology Data Exchange (ETDEWEB)

Etim, E; Basili, C [Rome Univ. (Italy). Ist. di Matematica

1978-08-21

The lagrangian in the path integral solution of the master equation of a stationary Markov process is derived by application of the Ehrenfest-type theorem of quantum mechanics and the Cauchy method of finding inverse functions. Applied to the non-linear Fokker-Planck equation the authors reproduce the result obtained by integrating over Fourier series coefficients and by other methods.

Pseudo-cubic thin-plate type Spline method for analyzing experimental data

Energy Technology Data Exchange (ETDEWEB)

Crecy, F de

1994-12-31

A mathematical tool, using pseudo-cubic thin-plate type Spline, has been developed for analysis of experimental data points. The main purpose is to obtain, without any a priori given model, a mathematical predictor with related uncertainties, usable at any point in the multidimensional parameter space. The smoothing parameter is determined by a generalized cross validation method. The residual standard deviation obtained is significantly smaller than that of a least square regression. An example of use is given with critical heat flux data, showing a significant decrease of the conception criterion (minimum allowable value of the DNB ratio). (author) 4 figs., 1 tab., 7 refs.

Pseudo-cubic thin-plate type Spline method for analyzing experimental data

International Nuclear Information System (INIS)

Crecy, F. de.

1993-01-01

A mathematical tool, using pseudo-cubic thin-plate type Spline, has been developed for analysis of experimental data points. The main purpose is to obtain, without any a priori given model, a mathematical predictor with related uncertainties, usable at any point in the multidimensional parameter space. The smoothing parameter is determined by a generalized cross validation method. The residual standard deviation obtained is significantly smaller than that of a least square regression. An example of use is given with critical heat flux data, showing a significant decrease of the conception criterion (minimum allowable value of the DNB ratio). (author) 4 figs., 1 tab., 7 refs

Effects of cooking method, cooking oil, and food type on aldehyde emissions in cooking oil fumes.

Science.gov (United States)

Peng, Chiung-Yu; Lan, Cheng-Hang; Lin, Pei-Chen; Kuo, Yi-Chun

2017-02-15

Cooking oil fumes (COFs) contain a mixture of chemicals. Of all chemicals, aldehydes draw a great attention since several of them are considered carcinogenic and formation of long-chain aldehydes is related to fatty acids in cooking oils. The objectives of this research were to compare aldehyde compositions and concentrations in COFs produced by different cooking oils, cooking methods, and food types and to suggest better cooking practices. This study compared aldehydes in COFs produced using four cooking oils (palm oil, rapeseed oil, sunflower oil, and soybean oil), three cooking methods (stir frying, pan frying, and deep frying), and two foods (potato and pork loin) in a typical kitchen. Results showed the highest total aldehyde emissions in cooking methods were produced by deep frying, followed by pan frying then by stir frying. Sunflower oil had the highest emissions of total aldehydes, regardless of cooking method and food type whereas rapeseed oil and palm oil had relatively lower emissions. This study suggests that using gentle cooking methods (e.g., stir frying) and using oils low in unsaturated fatty acids (e.g., palm oil or rapeseed oil) can reduce the production of aldehydes in COFs, especially long-chain aldehydes such as hexanal and t,t-2,4-DDE. Copyright © 2016 Elsevier B.V. All rights reserved.

Staphylococcus aureus strains associated with food poisoning outbreaks in France: comparison of different molecular typing methods, including MLVA

Science.gov (United States)

Roussel, Sophie; Felix, Benjamin; Vingadassalon, Noémie; Grout, Joël; Hennekinne, Jacques-Antoine; Guillier, Laurent; Brisabois, Anne; Auvray, Fréderic

2015-01-01

Staphylococcal food poisoning outbreaks (SFPOs) are frequently reported in France. However, most of them remain unconfirmed, highlighting a need for a better characterization of isolated strains. Here we analyzed the genetic diversity of 112 Staphylococcus aureus strains isolated from 76 distinct SFPOs that occurred in France over the last 30 years. We used a recently developed multiple-locus variable-number tandem-repeat analysis (MLVA) protocol and compared this method with pulsed field gel electrophoresis (PFGE), spa-typing and carriage of genes (se genes) coding for 11 staphylococcal enterotoxins (i.e., SEA, SEB, SEC, SED, SEE, SEG, SEH, SEI, SEJ, SEP, SER). The strains known to have an epidemiological association with one another had identical MLVA types, PFGE profiles, spa-types or se gene carriage. MLVA, PFGE and spa-typing divided 103 epidemiologically unrelated strains into 84, 80, and 50 types respectively demonstrating the high genetic diversity of S. aureus strains involved in SFPOs. Each MLVA type shared by more than one strain corresponded to a single spa-type except for one MLVA type represented by four strains that showed two different-but closely related-spa-types. The 87 enterotoxigenic strains were distributed across 68 distinct MLVA types that correlated all with se gene carriage except for four MLVA types. The most frequent se gene detected was sea, followed by seg and sei and the most frequently associated se genes were sea-seh and sea-sed-sej-ser. The discriminatory ability of MLVA was similar to that of PFGE and higher than that of spa-typing. This MLVA protocol was found to be compatible with high throughput analysis, and was also faster and less labor-intensive than PFGE. MLVA holds promise as a suitable method for investigating SFPOs and tracking the source of contamination in food processing facilities in real time. PMID:26441849

A Review of Haptoglobin Typing Methods for Disease Association Study and Preventing Anaphylactic Transfusion Reaction

Directory of Open Access Journals (Sweden)

Dae-Hyun Ko

2013-01-01

Full Text Available Haptoglobin, the product of the gene, is a glycoprotein involved in the scavenging of free hemoglobin. Haptoglobin levels increase or decrease in response to various acquired conditions, and they are also influenced by genetic predisposition. There were 2 major alleles, and , and 1 minor allele, . Many researchers have attempted to study the haptoglobin types and their association with disease; however, no definitive conclusions have been reached yet. It is reported that patients who are genetically deficient in haptoglobin are at risk of anaphylaxis against blood components containing haptoglobin. Haptoglobin genotypes also affect the reference intervals of haptoglobin levels. Many studies have attempted to establish simple and accurate typing methods. In this paper, we have broadly reviewed several methods for haptoglobin typing—phenotyping, Southern blotting, conventional PCR, real-time PCR, and loop-mediated isothermal amplification. We discuss their characteristics, clinical applications, and limitations. The phenotyping methods are time consuming and labor intensive and not designed to detect patients harboring . The rapid and robust haptoglobin genotyping may help in preventing fatal anaphylactic reactions and in establishing the relationships between the haptoglobin phenotypes and diseases.

Advances in Blood Typing.

Science.gov (United States)

Quraishy, N; Sapatnekar, S

The clinical importance of blood group antigens relates to their ability to evoke immune antibodies that are capable of causing hemolysis. The most important antigens for safe transfusion are ABO and D (Rh), and typing for these antigens is routinely performed for patients awaiting transfusion, prenatal patients, and blood donors. Typing for other blood group antigens, typically of the Kell, Duffy, Kidd, and MNS blood groups, is sometimes necessary, for patients who have, or are likely to develop antibodies to these antigens. The most commonly used typing method is serological typing, based on hemagglutination reactions against specific antisera. This method is generally reliable and practical for routine use, but it has certain drawbacks. In recent years, molecular typing has emerged as an alternative or supplemental typing method. It is based on detecting the polymorphisms and mutations that control the expression of blood group antigens, and using this information to predict the probable antigen type. Molecular typing methods are useful when traditional serological typing methods cannot be used, as when a patient has been transfused and the sample is contaminated with red blood cells from the transfused blood component. Moreover, molecular typing methods can precisely identify clinically significant variant antigens that cannot be distinguished by serological typing; this capability has been exploited for the resolution of typing discrepancies and shows promise for the improved transfusion management of patients with sickle cell anemia. Despite its advantages, molecular typing has certain limitations, and it should be used in conjunction with serological methods. © 2016 Elsevier Inc. All rights reserved.

Categorical methods for the interpretation of RNA profiles as cell type evidence and their limitations

NARCIS (Netherlands)

de Zoete, J.; Curran, J.; Sjerps, M.

2015-01-01

Existing methods for the interpretation of RNA profiles as evidence for the presence of certain cell types aim for making categorical statements. Such statements limit the possibility to report the associated uncertainty. From a statistical point of view, a probabilistic approach is a preferable

Automatic recognition of coronal type II radio bursts: The ARBIS 2 method and first observations

Science.gov (United States)

Lobzin, Vasili; Cairns, Iver; Robinson, Peter; Steward, Graham; Patterson, Garth

Major space weather events such as solar flares and coronal mass ejections are usually accompa-nied by solar radio bursts, which can potentially be used for real-time space weather forecasts. Type II radio bursts are produced near the local plasma frequency and its harmonic by fast electrons accelerated by a shock wave moving through the corona and solar wind with a typi-cal speed of 1000 km s-1 . The coronal bursts have dynamic spectra with frequency gradually falling with time and durations of several minutes. We present a new method developed to de-tect type II coronal radio bursts automatically and describe its implementation in an extended Automated Radio Burst Identification System (ARBIS 2). Preliminary tests of the method with spectra obtained in 2002 show that the performance of the current implementation is quite high, ˜ 80%, while the probability of false positives is reasonably low, with one false positive per 100-200 hr for high solar activity and less than one false event per 10000 hr for low solar activity periods. The first automatically detected coronal type II radio bursts are also presented. ARBIS 2 is now operational with IPS Radio and Space Services, providing email alerts and event lists internationally.

Optimization of the ship type using waveform by means of Rankine source method; Rankine source ho ni yoru hakei wo mochiita funagata saitekika ni tsuite

Energy Technology Data Exchange (ETDEWEB)

Hirayama, A; Eguchi, T [Mitsui Engineering and Shipbuilding Co. Ltd., Tokyo (Japan)

1996-04-10

Among the numerical calculation methods for steady-state wave-making problems, the panel shift Rankine source (PSRS) method has the advantages of rather precise determination of wave pattern of practical ship types, and short calculation period. The wave pattern around the hull was calculated by means of the PSRS method. The waveform analysis was carried out for the wave, to obtain an amplitude function of the original ship type. Based on the amplitude function, a ship type improvement method aiming at the optimization of ship type was provided using a conditional calculus of variation. A Series 60 (Cb=0.6) ship type was selected for the ship type improvement, to apply this technique. It was suggested that optimum design can be made for reducing the wave making resistance by means of this method. For the improvement of Series 60 ship type using this method, a great degree of reduction in the wave making resistance was recognized from the results of numerical waveform analysis. It was suggested that the ship type improvement aiming at the reduction of wave-making resistance can be made in shorter period and by smaller labor compared with the method using a waveform analysis of cistern tests. 5 refs., 9 figs.

Seismic margin assessment and earthquake experience based methods for WWER-440/213 type NPPs

International Nuclear Information System (INIS)

Masopust, R.

1996-01-01

This report covers the review of the already completed studies, namely, safe shutdown system identification and classification for Bohunice NPP and the comparative study of standards and criteria. It contains a report on currently ongoing studies concerning seismic margin assessment and earthquake experience based methods in application for seismic evaluation and verification of structures and equipment components of the operating WWER-440/213 type NPPs. This is based on experiences obtained from Paks NPP. The work plan for the remaining period of Benchmark CRP and the new proposals are included. These are concerned with seismic evaluation of selected safety related mechanical equipment and pipes of Paks NPP, and the actual seismic issues of the Temelin WWER-1000 type NPP

Pharmacy diabetes care program: analysis of two screening methods for undiagnosed type 2 diabetes in Australian community pharmacy.

Science.gov (United States)

Krass, I; Mitchell, B; Clarke, P; Brillant, M; Dienaar, R; Hughes, J; Lau, P; Peterson, G; Stewart, K; Taylor, S; Wilkinson, J; Armour, C

2007-03-01

To compare the efficacy and cost-effectiveness of two methods of screening for undiagnosed type 2 diabetes in Australian community pharmacy. A random sample of 30 pharmacies were allocated into two groups: (i) tick test only (TTO); or (ii) sequential screening (SS) method. Both methods used the same initial risk assessment for type 2 diabetes. Subjects with one or more risk factors in the TTO group were offered a referral to their general practitioner (GP). Under the SS method, patients with risk factors were offered a capillary blood glucose test and those identified as being at risk referred to a GP. The effectiveness and cost-effectiveness of these approaches was assessed. A total of 1286 people were screened over a period of 3 months. The rate of diagnosis of diabetes was significantly higher for SS compared with the TTO method (1.7% versus 0.2%; p=0.008). The SS method resulted in fewer referrals to the GP and a higher uptake of referrals than the TTO method and so was the more cost-effective screening method. SS is the superior method from a cost and efficacy perspective. It should be considered as the preferred option for screening by community based pharmacists in Australia.

Equivalent linearization method for limit cycle flutter analysis of plate-type structure in axial flow

International Nuclear Information System (INIS)

Lu Li; Yang Yiren

2009-01-01

The responses and limit cycle flutter of a plate-type structure with cubic stiffness in viscous flow were studied. The continuous system was dispersed by utilizing Galerkin Method. The equivalent linearization concept was performed to predict the ranges of limit cycle flutter velocities. The coupled map of flutter amplitude-equivalent linear stiffness-critical velocity was used to analyze the stability of limit cycle flutter. The theoretical results agree well with the results of numerical integration, which indicates that the equivalent linearization concept is available to the analysis of limit cycle flutter of plate-type structure. (authors)

Analysis of focusing error signals by differential astigmatic method under off-center tracking in the land-groove-type optical disk

Science.gov (United States)

Shinoda, Masahisa; Nakatani, Hidehiko

2015-04-01

We theoretically calculate the behavior of the focusing error signal in the land-groove-type optical disk when the objective lens traverses on out of the radius of the optical disk. The differential astigmatic method is employed instead of the conventional astigmatic method for generating the focusing error signals. The signal behaviors are compared and analyzed in terms of the gain difference of the slope sensitivity of the focusing error signals from the land and the groove. In our calculation, the format of digital versatile disc-random access memory (DVD-RAM) is adopted as the land-groove-type optical disk model, and advantageous conditions for suppressing the gain difference are investigated. The calculation method and results described in this paper will be reflected in the next generation land-groove-type optical disks.

Comparison of type and frequency of chromosome aberrations by conventional and G-staining methods in Hiroshima atomic bomb survivors

International Nuclear Information System (INIS)

Ohtaki, Kazuo; Shimba, Hachiro; Sofuni, Toshio; Awa, A.A.

1982-07-01

Somatic chromosomes derived from cultured lymphocytes of 23 atomic bomb survivors of Hiroshima were analyzed to determine the type and frequency of radiation-induced structural aberrations, using in sequence the ordinary staining method (O-method) and the trypsin G-banding method (G-method). Of 896 cells examined, 342 were found to contain induced aberrations, including 31 cells in which the precise identification of the type of aberrations was not possible even by the G-method. The number of chromosome aberrations observed was 376 in the 311 cells where aberrant precise identification was possible. The majority (288 or 76.6%) were intra- or inter-chromosomal symmetric exchanges due to a two-break event, while only 24 were found to be asymmetric exchanges (dicentrics, rings, and interstitial deletions). Further, there were 28 aberrations showing acentric fragments and terminal deletions, and the remaining 36 were complex intra- and inter-chromosomal exchanges involving three or more breaks which result in insertions and double translocations. A comparative karyotype analysis of the same metaphases examined by the sequential 0- And G-methods was carried out independently on 361 aberrations, mostly of the symmetric type. It was found that 78 (21.6%) of the 361 were detected only by the G-method; among these were 14 paracentric inversions, 48 reciprocal interchanges of chromosome segments with either equal length (11) or unequal length (37), 14 minor deletions and 2 complex rearrangements, all of which were nevertheless judged to fall within the normal range of variation by theO-method. In contrast, 25 aberrations detected in O-method chromosomes which were overcontracted or twisted, were shown to have normal banding patterns by the G-method. (author)

Use of multi-locus sequencing typing as identification method for the food-borne pathogen Listeria monocytogenes: a review

Directory of Open Access Journals (Sweden)

Sonia Lamon

2015-01-01

Full Text Available Listeria monocytogenes is an ubiquitous, intracellular pathogen which has been implicated within the past decade as the causative organism in several outbreaks of foodborne diseases. In this review, a new approach to molecular typing primarily designed for global epidemiology has been described: multi-locus sequencing typing (MLST. This approach is novel, in that it uses data that allow the unambiguous characterization of bacterial strains via the Internet. Our aim is to present the currently available selection of references on L. monocytogenes MLST detection methods and to discuss its use as gold standard to L. monocytogenes subtyping method.

System and method employing a self-organizing map load feature database to identify electric load types of different electric loads

Science.gov (United States)

Lu, Bin; Harley, Ronald G.; Du, Liang; Yang, Yi; Sharma, Santosh K.; Zambare, Prachi; Madane, Mayura A.

2014-06-17

A method identifies electric load types of a plurality of different electric loads. The method includes providing a self-organizing map load feature database of a plurality of different electric load types and a plurality of neurons, each of the load types corresponding to a number of the neurons; employing a weight vector for each of the neurons; sensing a voltage signal and a current signal for each of the loads; determining a load feature vector including at least four different load features from the sensed voltage signal and the sensed current signal for a corresponding one of the loads; and identifying by a processor one of the load types by relating the load feature vector to the neurons of the database by identifying the weight vector of one of the neurons corresponding to the one of the load types that is a minimal distance to the load feature vector.

Solution of generalized shifted linear systems with complex symmetric matrices

International Nuclear Information System (INIS)

Sogabe, Tomohiro; Hoshi, Takeo; Zhang, Shao-Liang; Fujiwara, Takeo

2012-01-01

We develop the shifted COCG method [R. Takayama, T. Hoshi, T. Sogabe, S.-L. Zhang, T. Fujiwara, Linear algebraic calculation of Green’s function for large-scale electronic structure theory, Phys. Rev. B 73 (165108) (2006) 1–9] and the shifted WQMR method [T. Sogabe, T. Hoshi, S.-L. Zhang, T. Fujiwara, On a weighted quasi-residual minimization strategy of the QMR method for solving complex symmetric shifted linear systems, Electron. Trans. Numer. Anal. 31 (2008) 126–140] for solving generalized shifted linear systems with complex symmetric matrices that arise from the electronic structure theory. The complex symmetric Lanczos process with a suitable bilinear form plays an important role in the development of the methods. The numerical examples indicate that the methods are highly attractive when the inner linear systems can efficiently be solved.

Method for solving an inverse problem of wing type by using a simple panel method; Kanbenna panel ho ni yoru yokugata gyaku mondai no ichikaiho

Energy Technology Data Exchange (ETDEWEB)

Ando, J; Matsumoto, D; Maita, S; Nakatake, K [Kyushu University, Fukuoka (Japan). Faculty of Engineering

1997-10-01

This paper describes one method for solving an inverse problem of wing type based on the source and quasi continuous vortex lattice method (SQCM) in designing marine propellers and underwater wings. With the SQCM, vortices and control points are distributed on wing camber according to the QCM, and wing surface is divided into certain number of panels. This is the method to decide vortex intensity and blow-out intensity simultaneously from the condition that vertical speed on the camber and the wing surface is zero, upon having distributed blow-out with certain intensity inside the panel. The method solves the inverse problem with the following process: specific point distribution is so determined that the targeted velocity on the wing surface is satisfied when wing surface pressure distribution and uniform flow velocity are given; and then the panels are so rearranged as in parallel with direction of the flow on the surface of the wing calculated by using these specific points to derive the targeted wing shape. This paper describes the problem solving procedure in great detail. It also introduces examples of numerical calculations. It shows one method for solving the inverse problem in wing type using the SQCM as a simple panel method, whereas its good convergence and stability were verified. Considerations on effects of free surface and expansion of the method into three-dimensional problems will be implemented in the future. 11 refs., 8 figs.

ANNSVM: A Novel Method for Graph-Type Classification by Utilization of Fourier Transformation, Wavelet Transformation, and Hough Transformation

Directory of Open Access Journals (Sweden)

Sarunya Kanjanawattana

2017-07-01

Full Text Available Image classification plays a vital role in many areas of study, such as data mining and image processing; however, serious problems collectively referred to as the course of dimensionality have been encountered in previous studies as factors that reduce system performance. Furthermore, we also confront the problem of different graph characteristics even if graphs belong to same types. In this study, we propose a novel method of graph-type classification. Using our approach, we open up a new solution of high-dimensional images and address problems of different characteristics by converting graph images to one dimension with a discrete Fourier transformation and creating numeric datasets using wavelet and Hough transformations. Moreover, we introduce a new classifier, which is a combination between artificial neuron networks (ANNs and support vector machines (SVMs, which we call ANNSVM, to enhance accuracy. The objectives of our study are to propose an effective graph-type classification method that includes finding a new data representative used for classification instead of two-dimensional images and to investigate what features make our data separable. To evaluate the method of our study, we conducted five experiments with different methods and datasets. The input dataset we focused on was a numeric dataset containing wavelet coefficients and outputs of a Hough transformation. From our experimental results, we observed that the highest accuracy was provided using our method with Coiflet 1, which achieved a 0.91 accuracy.

Nonlinear evolution-type equations and their exact solutions using inverse variational methods

International Nuclear Information System (INIS)

Kara, A H; Khalique, C M

2005-01-01

We present the role of invariants in obtaining exact solutions of differential equations. Firstly, conserved vectors of a partial differential equation (p.d.e.) allow us to obtain reduced forms of the p.d.e. for which some of the Lie point symmetries (in vector field form) are easily concluded and, therefore, provide a mechanism for further reduction. Secondly, invariants of reduced forms of a p.d.e. are obtainable from a variational principle even though the p.d.e. itself does not admit a Lagrangian. In this latter case, the reductions carry all the usual advantages regarding Noether symmetries and double reductions. The examples we consider are nonlinear evolution-type equations such as the Korteweg-deVries equation, but a detailed analysis is made on the Fisher equation (which describes reaction-diffusion waves in biology, inter alia). Other diffusion-type equations lend themselves well to the method we describe (e.g., the Fitzhugh Nagumo equation, which is briefly discussed). Some aspects of Painleve properties are also suggested

An Early Detection Method of Type-2 Diabetes Mellitus in Public Hospital

Directory of Open Access Journals (Sweden)

Hermansyah Hermansyah

2011-08-01

Full Text Available Diabetes is a chronic disease and major problem of morbidity and mortality in developing countries. The International Diabetes Federation estimates that 285 million people around the world have diabetes. This total is expected to rise to 438 million within 20 years. Type-2 diabetes mellitus (T2DM is the most common type of diabetes and accounts for 90-95% of all diabetes. Detection of T2DM from various factors or symptoms became an issue which was not free from false presumptions accompanied by unpredictable effects. According to this context, data mining and machine learning could be used as an alternative way help us in knowledge discovery from data. We applied several learning methods, such as instance based learners, naive bayes, decision tree, support vector machines, and boosted algorithm acquire information from historical data of patients medical records of Mohammad Hoesin public hospital in Southern Sumatera. Rules are extracted from Decision tree to offer decision-making support through early detection of T2DM for clinicians.

Collimation method using an image processing technique for an assembling-type antenna

Science.gov (United States)

Okuyama, Toshiyuki; Kimura, Shinichi; Fukase, Yutaro; Ueno, Hiroshi; Harima, Kouichi; Sato, Hitoshi; Yoshida, Tetsuji

1998-10-01

To construct highly precise space structures, such as antennas, it is essential to be able to collimate them with high precision by remote operation. Surveying techniques which are commonly used for collimating ground-based antennas cannot be applied to space systems, since they require relatively sensitive and complex instruments. In this paper, we propose a collimation method that is applied to mark-patterns mounted on an antenna dish for detecting very slight displacements. By calculating a cross- correlation function between the target and reference mark- patterns, and by interpolating this calculated function, we can measure the displacement of the target mark-pattern in sub-pixel precision. We developed a test-bed for the measuring system and evaluated several mark-patterns suitable for our image processing technique. A mark-pattern with which enabled to detect displacement within an RMS error of 1/100 pixels was found. Several tests conducted using this chosen pattern verified the robustness of the method to different light conditions and alignment errors. This collimating method is designed for application to an assembling-type antenna which is being developed by the Communications Research Laboratory.

A study on structural changes in protein by time-division type Laue method

International Nuclear Information System (INIS)

Morimoto, Hideki

1995-01-01

In order to know the physiological roles of proteins, it is important to investigate the intermediate states of their structural changes. The sizes of proteins are generally several tens angstrom(A). Considering the resolution, only x-ray crystal analysis can be used in practice for the investigation of the mechanism of protein structural changes, though NMR is applicable only for small-sized proteins. However, x-ray analysis is not so suitable for analysis of their intermediate states. Thus, the author paid attention to the time-division type Laue method for the study of hemoglobin (Hb). Laser-flash induces to release carbonmonooxide (CO) from carboxyhemoglobin (Hb(CO) 4 ). Therefore, if an appropriate length of x-ray pulse (∼100 picosec) is available, the processes in the period from cleavage of the bond between a ligand (O 2 , CO or NO) and Hb to recombination of them might be monitored. Using DNA recombination and chemical modification techniques, recombinant Hb, of which T structure is stable was produced. An investigation on the conditions which allow to release CO from the Hb is undertaken using a single crystal of this Hb. The experimental systems applicable to time-division type Laue method are some protein molecules participating in chemical reactions inducible by light absorption, the electron-transfer system excited by light and so on. (M.N.)

A study on structural changes in protein by time-division type Laue method

Energy Technology Data Exchange (ETDEWEB)

Morimoto, Hideki [Osaka Univ., Toyonaka (Japan). Faculty of Engineering Science

1995-11-01

In order to know the physiological roles of proteins, it is important to investigate the intermediate states of their structural changes. The sizes of proteins are generally several tens angstrom(A). Considering the resolution, only x-ray crystal analysis can be used in practice for the investigation of the mechanism of protein structural changes, though NMR is applicable only for small-sized proteins. However, x-ray analysis is not so suitable for analysis of their intermediate states. Thus, the author paid attention to the time-division type Laue method for the study of hemoglobin (Hb). Laser-flash induces to release carbonmonooxide (CO) from carboxyhemoglobin (Hb(CO){sub 4}). Therefore, if an appropriate length of x-ray pulse ({approx}100 picosec) is available, the processes in the period from cleavage of the bond between a ligand (O{sub 2}, CO or NO) and Hb to recombination of them might be monitored. Using DNA recombination and chemical modification techniques, recombinant Hb, of which T structure is stable was produced. An investigation on the conditions which allow to release CO from the Hb is undertaken using a single crystal of this Hb. The experimental systems applicable to time-division type Laue method are some protein molecules participating in chemical reactions inducible by light absorption, the electron-transfer system excited by light and so on. (M.N.)

New exact solutions of the Tzitzéica-type equations in non-linear optics using the expa function method

Science.gov (United States)

Hosseini, K.; Ayati, Z.; Ansari, R.

2018-04-01

One specific class of non-linear evolution equations, known as the Tzitzéica-type equations, has received great attention from a group of researchers involved in non-linear science. In this article, new exact solutions of the Tzitzéica-type equations arising in non-linear optics, including the Tzitzéica, Dodd-Bullough-Mikhailov and Tzitzéica-Dodd-Bullough equations, are obtained using the expa function method. The integration technique actually suggests a useful and reliable method to extract new exact solutions of a wide range of non-linear evolution equations.

An advanced method for classifying atmospheric circulation types based on prototypes connectivity graph

Science.gov (United States)

Zagouras, Athanassios; Argiriou, Athanassios A.; Flocas, Helena A.; Economou, George; Fotopoulos, Spiros

2012-11-01

Classification of weather maps at various isobaric levels as a methodological tool is used in several problems related to meteorology, climatology, atmospheric pollution and to other fields for many years. Initially the classification was performed manually. The criteria used by the person performing the classification are features of isobars or isopleths of geopotential height, depending on the type of maps to be classified. Although manual classifications integrate the perceptual experience and other unquantifiable qualities of the meteorology specialists involved, these are typically subjective and time consuming. Furthermore, during the last years different approaches of automated methods for atmospheric circulation classification have been proposed, which present automated and so-called objective classifications. In this paper a new method of atmospheric circulation classification of isobaric maps is presented. The method is based on graph theory. It starts with an intelligent prototype selection using an over-partitioning mode of fuzzy c-means (FCM) algorithm, proceeds to a graph formulation for the entire dataset and produces the clusters based on the contemporary dominant sets clustering method. Graph theory is a novel mathematical approach, allowing a more efficient representation of spatially correlated data, compared to the classical Euclidian space representation approaches, used in conventional classification methods. The method has been applied to the classification of 850 hPa atmospheric circulation over the Eastern Mediterranean. The evaluation of the automated methods is performed by statistical indexes; results indicate that the classification is adequately comparable with other state-of-the-art automated map classification methods, for a variable number of clusters.

Effects of categorization method, regression type, and variable distribution on the inflation of Type-I error rate when categorizing a confounding variable.

Science.gov (United States)

Barnwell-Ménard, Jean-Louis; Li, Qing; Cohen, Alan A

2015-03-15

The loss of signal associated with categorizing a continuous variable is well known, and previous studies have demonstrated that this can lead to an inflation of Type-I error when the categorized variable is a confounder in a regression analysis estimating the effect of an exposure on an outcome. However, it is not known how the Type-I error may vary under different circumstances, including logistic versus linear regression, different distributions of the confounder, and different categorization methods. Here, we analytically quantified the effect of categorization and then performed a series of 9600 Monte Carlo simulations to estimate the Type-I error inflation associated with categorization of a confounder under different regression scenarios. We show that Type-I error is unacceptably high (>10% in most scenarios and often 100%). The only exception was when the variable categorized was a continuous mixture proxy for a genuinely dichotomous latent variable, where both the continuous proxy and the categorized variable are error-ridden proxies for the dichotomous latent variable. As expected, error inflation was also higher with larger sample size, fewer categories, and stronger associations between the confounder and the exposure or outcome. We provide online tools that can help researchers estimate the potential error inflation and understand how serious a problem this is. Copyright © 2014 John Wiley & Sons, Ltd.

Modification of Method for Solution of Direct Kinematic Problem for the Type of Platform Manipulators with Six Degrees of Freedom

Directory of Open Access Journals (Sweden)

A. L. Lapikov

2014-01-01

Full Text Available This paper considers creation of methods for research of multi-section manipulators of parallel structure. To solve this task it is necessary, firstly, to carry out generalization, systematization, and enhancement of existing models of platform manipulators with six degrees of freedom; secondly, it is necessary to modify previously suggested methods for solving the kinematic tasks for the specified type of manipulation mechanisms. The paper presents detailed domain analysis, describes major issues appearing in the course of research, and suggests basic methods of their solution. The paper demonstrates the necessity for modification of existing models through supplementing new parameters. Modification and generalization of the previously suggested method for solution of direct kinematic problem for the specified type of manipulators were carried out. Method for solution of this problem consists in establishing the dependence of functional relationship of Cartesian coordinates and orientation of the moving platform center on the values of generalized coordinates of manipulator (in case of platform manipulators, these are the lengths of telescopic legs connecting the base and the moving platform of the manipulator. The method is created in such a way that solution of direct kinematic problem results in finding of the analytical equation of the plane where the moving platform lies. The equation of the required plane is described through three points (attachment points of the moving platform joints. To define coordinate values of the joints, the system of nine non-linear equations is generated. It should be noted that the system of equations is composed of one-type equations with the same type of nonlinearity. The physical meaning of all the nine equations of the system is Euclidean distance between the points of the manipulator. The location and orientation of the manipulator are depicted as a homogenous transformation matrix. Vectors of translation

System and method employing a minimum distance and a load feature database to identify electric load types of different electric loads

Science.gov (United States)

Lu, Bin; Yang, Yi; Sharma, Santosh K; Zambare, Prachi; Madane, Mayura A

2014-12-23

A method identifies electric load types of a plurality of different electric loads. The method includes providing a load feature database of a plurality of different electric load types, each of the different electric load types including a first load feature vector having at least four different load features; sensing a voltage signal and a current signal for each of the different electric loads; determining a second load feature vector comprising at least four different load features from the sensed voltage signal and the sensed current signal for a corresponding one of the different electric loads; and identifying by a processor one of the different electric load types by determining a minimum distance of the second load feature vector to the first load feature vector of the different electric load types of the load feature database.

Primary and secondary battery consumption trends in Sweden 1996-2013: method development and detailed accounting by battery type.

Science.gov (United States)

Patrício, João; Kalmykova, Yuliya; Berg, Per E O; Rosado, Leonardo; Åberg, Helena

2015-05-01

In this article, a new method based on Material Flow Accounting is proposed to study detailed material flows in battery consumption that can be replicated for other countries. The method uses regularly available statistics on import, industrial production and export of batteries and battery-containing electric and electronic equipment (EEE). To promote method use by other scholars with no access to such data, several empirically results and their trends over time, for different types of batteries occurrence among the EEE types are provided. The information provided by the method can be used to: identify drivers of battery consumption; study the dynamic behavior of battery flows - due to technology development, policies, consumers behavior and infrastructures. The method is exemplified by the study of battery flows in Sweden for years 1996-2013. The batteries were accounted, both in units and weight, as primary and secondary batteries; loose and integrated; by electrochemical composition and share of battery use between different types of EEE. Results show that, despite a fivefold increase in the consumption of rechargeable batteries, they account for only about 14% of total use of portable batteries. Recent increase in digital convergence has resulted in a sharp decline in the consumption of primary batteries, which has now stabilized at a fairly low level. Conversely, the consumption of integrated batteries has increased sharply. In 2013, 61% of the total weight of batteries sold in Sweden was collected, and for the particular case of alkaline manganese dioxide batteries, the value achieved 74%. Copyright © 2015 Elsevier Ltd. All rights reserved.

A novel method of flat YBCO rings development for shield-type superconducting fault current limiters fabrication

International Nuclear Information System (INIS)

Hekmati, Arsalan; Hosseini, Mehdi; Vakilian, Mehdi; Fardmanesh, Mehdi

2012-01-01

A method has been proposed for flat YBCO ring Fabrication. A prototype SFCL with proposed design has been fabricated using the rings. J c characteristics of the rings are measured using an innovative method. The application of flat superconductor rings has been investigated in the structure of inductive shield-type high temperature superconducting fault current limiters, HT c -SFCL. A laboratory scale inductive shield-type HT c -SFCL has been designed and fabricated using flat superconductor rings. The fabrication process has been fully presented. YBCO powder has been used for the fabrication of superconductor rings. This fabrication process, being quite innovative, is introduced completely. The method of the trapped field measurement has been used for the critical current density measurement of the fabricated superconductor rings. The device with nominal current of 2 A was tested in a 30 V circuit. The SFCL successfully limited the fault currents of up to 10 times the nominal current to an approximately fixed value of 3 A. The voltage-current characteristic of the fabricated prototype has also been obtained and has shown compatibility with the fault current limitation results.

Evaluation of Eigenvalue Routines for Large Scale Applications

Directory of Open Access Journals (Sweden)

V.A. Tischler

1994-01-01

Full Text Available The NASA structural analysis (NASTRAN∗ program is one of the most extensively used engineering applications software in the world. It contains a wealth of matrix operations and numerical solution techniques, and they were used to construct efficient eigenvalue routines. The purpose of this article is to examine the current eigenvalue routines in NASTRAN and to make efficiency comparisons with a more recent implementation of the block Lanczos aLgorithm. This eigenvalue routine is now availabLe in several mathematics libraries as well as in severaL commerciaL versions of NASTRAN. In addition, the eRA Y library maintains a modified version of this routine on their network. Several example problems, with a varying number of degrees of freedom, were selected primarily for efficiency bench-marking. Accuracy is not an issue, because they all gave comparable results. The block Lanczos algorithm was found to be extremely efficient, particularly for very large problems.

Stable reduced-order models of generalized dynamical systems using coordinate-transformed Arnoldi algorithms

Energy Technology Data Exchange (ETDEWEB)

Silveira, L.M.; Kamon, M.; Elfadel, I.; White, J. [Massachusetts Inst. of Technology, Cambridge, MA (United States)

1996-12-31

Model order reduction based on Krylov subspace iterative methods has recently emerged as a major tool for compressing the number of states in linear models used for simulating very large physical systems (VLSI circuits, electromagnetic interactions). There are currently two main methods for accomplishing such a compression: one is based on the nonsymmetric look-ahead Lanczos algorithm that gives a numerically stable procedure for finding Pade approximations, while the other is based on a less well characterized Arnoldi algorithm. In this paper, we show that for certain classes of generalized state-space systems, the reduced-order models produced by a coordinate-transformed Arnoldi algorithm inherit the stability of the original system. Complete Proofs of our results will be given in the final paper.

Phene Plate (PhP) biochemical fingerprinting. A screening method for epidemiological typing of enterococcal isolates.

Science.gov (United States)

Saeedi, B; Tärnberg, M; Gill, H; Hällgren, A; Jonasson, J; Nilsson, L E; Isaksson, B; Kühn, I; Hanberger, H

2005-09-01

Pulsed-field gel electrophoresis (PFGE) is currently considered the gold standard for genotyping of enterococci. However, PFGE is both expensive and time-consuming. The purpose of this study was to investigate whether the PhP system can be used as a reliable clinical screening method for detection of genetically related isolates of enterococci. If so, it should be possible to minimize the number of isolates subjected to PFGE typing, which would save time and money. Ninety-nine clinical enterococcal isolates were analysed by PhP (similarity levels 0.90-0.975) and PFGE (similarity levels PhP also belong to the same cluster according to PFGE, i.e. p(A(PFGE)=B(PFGE) * A(PhP)=B(PhP)), and the probability that a pair of isolates of different types according to PhP also belong to different clusters according to PFGE, i.e. p(A(PFGE) not equalB(PFGE) * A(PhP) not equalB(PhP)), was relatively high for E. faecalis (0.86 and 0.96, respectively), but was lower for E. faecium (0.51 and 0.77, respectively). The concordance which shows the probability that PhP and PFGE agree on match or mismatch was 86%-93% for E. faecalis and 54%-66% for E. faecium, which indicates that the PhP method may be useful for epidemiological typing of E. faecalis in the current settings but not for E. faecium.

Neutronics comparative analysis of plate-type research reactor using deterministic and stochastic methods

International Nuclear Information System (INIS)

Liu, Shichang; Wang, Guanbo; Wu, Gaochen; Wang, Kan

2015-01-01

Highlights: • DRAGON and DONJON are applied and verified in calculations of research reactors. • Continuous-energy Monte Carlo calculations by RMC are chosen as the references. • “ECCO” option of DRAGON is suitable for the calculations of research reactors. • Manual modifications of cross-sections are not necessary with DRAGON and DONJON. • DRAGON and DONJON agree well with RMC if appropriate treatments are applied. - Abstract: Simulation of the behavior of the plate-type research reactors such as JRR-3M and CARR poses a challenge for traditional neutronics calculation tools and schemes for power reactors, due to the characteristics of complex geometry, highly heterogeneity and large leakage of the research reactors. Two different theoretical approaches, the deterministic and the stochastic methods, are used for the neutronics analysis of the JRR-3M plate-type research reactor in this paper. For the deterministic method the neutronics codes DRAGON and DONJON are used, while the continuous-energy Monte Carlo code RMC (Reactor Monte Carlo code) is employed for the stochastic approach. The goal of this research is to examine the capability of the deterministic code system DRAGON and DONJON to reliably simulate the research reactors. The results indicate that the DRAGON and DONJON code system agrees well with the continuous-energy Monte Carlo simulation on both k eff and flux distributions if the appropriate treatments (such as the ECCO option) are applied

Errors in accident data, its types, causes and methods of rectification-analysis of the literature.

Science.gov (United States)

Ahmed, Ashar; Sadullah, Ahmad Farhan Mohd; Yahya, Ahmad Shukri

2017-07-29

Most of the decisions taken to improve road safety are based on accident data, which makes it the back bone of any country's road safety system. Errors in this data will lead to misidentification of black spots and hazardous road segments, projection of false estimates pertinent to accidents and fatality rates, and detection of wrong parameters responsible for accident occurrence, thereby making the entire road safety exercise ineffective. Its extent varies from country to country depending upon various factors. Knowing the type of error in the accident data and the factors causing it enables the application of the correct method for its rectification. Therefore there is a need for a systematic literature review that addresses the topic at a global level. This paper fulfils the above research gap by providing a synthesis of literature for the different types of errors found in the accident data of 46 countries across the six regions of the world. The errors are classified and discussed with respect to each type and analysed with respect to income level; assessment with regard to the magnitude for each type is provided; followed by the different causes that result in their occurrence, and the various methods used to address each type of error. Among high-income countries the extent of error in reporting slight, severe, non-fatal and fatal injury accidents varied between 39-82%, 16-52%, 12-84%, and 0-31% respectively. For middle-income countries the error for the same categories varied between 93-98%, 32.5-96%, 34-99% and 0.5-89.5% respectively. The only four studies available for low-income countries showed that the error in reporting non-fatal and fatal accidents varied between 69-80% and 0-61% respectively. The logistic relation of error in accident data reporting, dichotomised at 50%, indicated that as the income level of a country increases the probability of having less error in accident data also increases. Average error in recording information related to the

Comparison and discussion of two types of threat (Hazard) categorization method for nuclear facilities

International Nuclear Information System (INIS)

Tang, Rongyao; Xu, Xiaoxiao; Zhang, Jiangang; Zhao, Bin

2008-01-01

The emergency threat categorization method suggested by international atomic energy agency (IAEA) and hazard categorization standard by the Department of Energy of United States (USDOE) for nuclear facilities are compared and discussed in this paper. The research shows the two types of categorization method for nuclear facility are similar, though each has its own speciality. The categorization method suggested by IAEA is quite completed and sound in scientific basis. The thresholds of radioactive material are connected with the quantity of dangerous source, and the latest radiobiological effect research results are taken in setting the thresholds. While the main purpose is put on emergency management, some of the categorization criteria do not fit for safety surveillance of nuclear facilities. The categorization method of DOE is advanced in its operability, and it fits for safety surveillance. The disadvantage is that the thresholds of radioactive material need to be updated because the parameters used in calculation is outdated, and also the threshold of category 3 is somewhat disputable for many reasons. We should take advantage of both methods and adjust the standards according to the application purpose while establishing the categorization standard of nuclear facilities in China. (author)

Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application

Directory of Open Access Journals (Sweden)

Monica M. Vasquez

2016-11-01

Full Text Available Abstract Background The study of circulating biomarkers and their association with disease outcomes has become progressively complex due to advances in the measurement of these biomarkers through multiplex technologies. The Least Absolute Shrinkage and Selection Operator (LASSO is a data analysis method that may be utilized for biomarker selection in these high dimensional data. However, it is unclear which LASSO-type method is preferable when considering data scenarios that may be present in serum biomarker research, such as high correlation between biomarkers, weak associations with the outcome, and sparse number of true signals. The goal of this study was to compare the LASSO to five LASSO-type methods given these scenarios. Methods A simulation study was performed to compare the LASSO, Adaptive LASSO, Elastic Net, Iterated LASSO, Bootstrap-Enhanced LASSO, and Weighted Fusion for the binary logistic regression model. The simulation study was designed to reflect the data structure of the population-based Tucson Epidemiological Study of Airway Obstructive Disease (TESAOD, specifically the sample size (N = 1000 for total population, 500 for sub-analyses, correlation of biomarkers (0.20, 0.50, 0.80, prevalence of overweight (40% and obese (12% outcomes, and the association of outcomes with standardized serum biomarker concentrations (log-odds ratio = 0.05–1.75. Each LASSO-type method was then applied to the TESAOD data of 306 overweight, 66 obese, and 463 normal-weight subjects with a panel of 86 serum biomarkers. Results Based on the simulation study, no method had an overall superior performance. The Weighted Fusion correctly identified more true signals, but incorrectly included more noise variables. The LASSO and Elastic Net correctly identified many true signals and excluded more noise variables. In the application study, biomarkers of overweight and obesity selected by all methods were Adiponectin, Apolipoprotein H, Calcitonin, CD

Magnetocaloric effect in quantum spin-s chains

Directory of Open Access Journals (Sweden)

A. Honecker

2009-01-01

Full Text Available We compute the entropy of antiferromagnetic quantum spin-s chains in an external magnetic field using exact diagonalization and Quantum Monte Carlo simulations. The magnetocaloric effect, i. e., temperature variations during adiabatic field changes, can be derived from the isentropes. First, we focus on the example of the spin-s=1 chain and show that one can cool by closing the Haldane gap with a magnetic field. We then move to quantum spin-s chains and demonstrate linear scaling with s close to the saturation field. In passing, we propose a new method to compute many low-lying excited states using the Lanczos recursion.

Influence of the refractive index core profile on modal scattering of terminated two-dimensional waveguides.

Science.gov (United States)

Koukoutsaki, Panagiota A; Dasyras, Nikolaos F; Tigelis, Ioannis G; Manenkov, Alexander B; Amditis, Angelos J

2007-06-01

We examine the influence of the refractive index core profile on the modal scattering of abruptly terminated slab waveguides. The analysis is based on the integral equation method with accelerating parameters, while for the field description in the waveguide core, an appropriate Lanczos-Fourier expansion is employed. The electric-field distribution on the terminal plane, the reflection and transformation coefficient of the TE guided modes, and the far-field radiation pattern are computed. Numerical results are presented for slab waveguides with step, linear, and parabolic refractive index profiles of the core. Finally, several approximate analytical solutions are derived to study the problem in question and to explain the results obtained.

Morphing the Shell Model into an Effective Theory

International Nuclear Information System (INIS)

Haxton, W. C.; Song, C.-L.

2000-01-01

We describe a strategy for attacking the canonical nuclear structure problem--bound-state properties of a system of point nucleons interacting via a two-body potential--which involves an expansion in the number of particles scattering at high momenta, but is otherwise exact. The required self-consistent solutions of the Bloch-Horowitz equation for effective interactions and operators are obtained by an efficient Green's function method based on the Lanczos algorithm. We carry out this program for the simplest nuclei, d and 3 He , in order to explore the consequences of reformulating the shell model as a controlled effective theory. (c) 2000 The American Physical Society

Inter-laboratory evaluation of three flagellin PCR/RFLP methods for typing Campylobacter jejuni and C-coli: the CAMPYNET experience

DEFF Research Database (Denmark)

Harrington, Clare S.; Moran, L.; Ridley, A.M.

2003-01-01

Aims: To compare typeability, discriminatory ability, and inter-laboratory reproducibility of three flagellin PCR/RFLP(fla typing) methods previously described for Campylobacter. Methods and Results: The sample set(n = 100) was diverse, including both C. jejuni (n = 85) and C. coli (n = 15). Two ...

Inverter-Current-Feedback Resonance-Suppression Method for LCL-Type DG System to Reduce Resonance-Frequency Offset and Grid-Inductance Effect

DEFF Research Database (Denmark)

Zhou, Leming; Zhou, Xiaoping; Chen, Yandong

2018-01-01

For the LCL-type grid-connected distributed generation system, the grid-current-feedback active damping (GCFAD) methods have a conflict between the resonance-suppression ability and harmonic-currents amplification. For this, an inverter-current-feedback reso-nance-suppression (ICFRS) method without...... additional sensors is proposed to reduce resonance-frequency offset and grid-inductance effect due to its unattenuated damping characteristic under high-frequency bandwidth. By analyzing two types of equivalent impedance models of ICFRS and GCFAD with a high-pass filter (HPF), GCFAD can suppress...

The BL-QMR algorithm for non-Hermitian linear systems with multiple right-hand sides

Energy Technology Data Exchange (ETDEWEB)

Freund, R.W. [AT& T Bell Labs., Murray Hill, NJ (United States)

1996-12-31

Many applications require the solution of multiple linear systems that have the same coefficient matrix, but differ in their right-hand sides. Instead of applying an iterative method to each of these systems individually, it is potentially much more efficient to employ a block version of the method that generates iterates for all the systems simultaneously. However, it is quite intricate to develop robust and efficient block iterative methods. In particular, a key issue in the design of block iterative methods is the need for deflation. The iterates for the different systems that are produced by a block method will, in general, converge at different stages of the block iteration. An efficient and robust block method needs to be able to detect and then deflate converged systems. Each such deflation reduces the block size, and thus the block method needs to be able to handle varying block sizes. For block Krylov-subspace methods, deflation is also crucial in order to delete linearly and almost linearly dependent vectors in the underlying block Krylov sequences. An added difficulty arises for Lanczos-type block methods for non-Hermitian systems, since they involve two different block Krylov sequences. In these methods, deflation can now occur independently in both sequences, and consequently, the block sizes in the two sequences may become different in the course of the iteration, even though they were identical at the beginning. We present a block version of Freund and Nachtigal`s quasi-minimal residual method for the solution of non-Hermitian linear systems with single right-hand sides.

Synthesis and catalytic activity of Birnessite-Type Manganese Oxide synthesized by solvent-free method

Science.gov (United States)

Siregar, S. S.; Awaluddin, A.

2018-04-01

Redox reaction between KMnO4 and glucose usingsolvent-free method produces the octahedral layer birnessite-type manganese oxide. The effects of mole ratios, temperatures, and calcinations time on the structures and crystallinity of the oxides were studied throughthe X-ray powder diffraction analysis. The mole ratio of KMnO4/glucose (1:3) produces the purebirnessite with low crystallinity, whereas the mole ratio of KMnO4/glucose (3:1) yields high crystalline birnessite with minor components of hausmannite-type manganese oxide.The increasing of the temperature and calcinations times (300-700 °C and 3-7 h, respectively) willimprove the crystallinity and the purity of the as-synthesized oxide. Further experiments also showed that the as-syntesized octahedral layer birnessite-type manganese oxides have catalytic activity on the degradation of methylene blue (MB) dye with H2O2 as oxidant. The results revealed that the effective degradation could be achieved only in the presence of both the birnessite and H2O2, whereas without the addition of catalyst (H2O2only) or addition of H2O2 (catalyst only), the 3.5% and 15.5% of MB removal were obtained, respectively.

Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application.

Science.gov (United States)

Vasquez, Monica M; Hu, Chengcheng; Roe, Denise J; Chen, Zhao; Halonen, Marilyn; Guerra, Stefano

2016-11-14

The study of circulating biomarkers and their association with disease outcomes has become progressively complex due to advances in the measurement of these biomarkers through multiplex technologies. The Least Absolute Shrinkage and Selection Operator (LASSO) is a data analysis method that may be utilized for biomarker selection in these high dimensional data. However, it is unclear which LASSO-type method is preferable when considering data scenarios that may be present in serum biomarker research, such as high correlation between biomarkers, weak associations with the outcome, and sparse number of true signals. The goal of this study was to compare the LASSO to five LASSO-type methods given these scenarios. A simulation study was performed to compare the LASSO, Adaptive LASSO, Elastic Net, Iterated LASSO, Bootstrap-Enhanced LASSO, and Weighted Fusion for the binary logistic regression model. The simulation study was designed to reflect the data structure of the population-based Tucson Epidemiological Study of Airway Obstructive Disease (TESAOD), specifically the sample size (N = 1000 for total population, 500 for sub-analyses), correlation of biomarkers (0.20, 0.50, 0.80), prevalence of overweight (40%) and obese (12%) outcomes, and the association of outcomes with standardized serum biomarker concentrations (log-odds ratio = 0.05-1.75). Each LASSO-type method was then applied to the TESAOD data of 306 overweight, 66 obese, and 463 normal-weight subjects with a panel of 86 serum biomarkers. Based on the simulation study, no method had an overall superior performance. The Weighted Fusion correctly identified more true signals, but incorrectly included more noise variables. The LASSO and Elastic Net correctly identified many true signals and excluded more noise variables. In the application study, biomarkers of overweight and obesity selected by all methods were Adiponectin, Apolipoprotein H, Calcitonin, CD14, Complement 3, C-reactive protein, Ferritin

Quantum molecular dynamics: Numerical methods and physical study of the structure, thermodynamics, stability and fragmentation of sodium metallic clusters

International Nuclear Information System (INIS)

Blaise, Philippe

1998-01-01

The aim of this thesis is to study metallic sodium clusters by numerical simulation. We have developed two ab initio molecular dynamics programs within the formalism of density functional theory. The first is based on the semi-classical extended Thomas-Fermi approach. We use a real-space grid and a Car-Parrinello-like scheme. The computational cost is O(N), and we have built a pseudopotential that speeds up the calculations. By neglecting quantum shell effects, we are able to study a very large set of clusters. We show that sodium cluster energies fit well a liquid drop formula, by adjusting a few parameters. We have investigated breathing modes, surface oscillations and the net charge density. We have shown that the surface energy varies strongly with temperature, and that clusters have a lower melting point than bulk material. We have calculated fission barriers by a constraint method. The second program is based on the quantum Kohn-Sham approach. We use a real-space grid, and combine a generalized Broyden scheme for assuring self-consistency with an iterative Davidson-Lanczos algorithm for solving the Eigen-problem. The cost of the method is much higher. First of all, we have calculated some stable structures for small clusters and their energetics. We obtained very good agreement with previous works. Then, we have investigated highly charged cluster dynamics. We have identified a chaotic fission process. For high fissility systems, we observe a multi-fragmentation dynamics and we find preferential emission of monomers on a characteristic time scale less than a pico-second. This has been simulated for the first time, with the help of our adaptive grid method which follows each fragment as they move apart during the fragmentation. (author)

A STUDY ON THE EARTHQUAKE RESPONSE AND EARTHQUAKE RESISTANT DESIGN METHOD OF AN OPEN TYPE WHARF WITH PNEUMATIC CAISSONS

Science.gov (United States)

Oishi, Masahiko; Nagao, Takashi; Shigeki, Kouji; Ouchi, Masatoshi; Sato, Yuske; Kinomiya, Osamu

Seismic response of an open type wharf with pneumatic caisson was clarified using a dynamic finite element method. As a result, rocking behavior of caisson foundations were observed and applicability of a frame model analysis to the earthquake resistant design of a wharf was suggested. Authors proposed the framework of earthquake resistant design method of the wharf including the evaluation method of response acceleration of the wharf.

Application of Cauchy-type integrals in developing effective methods for depth-to-basement inversion of gravity and gravity gradiometry data

DEFF Research Database (Denmark)

Cai, Hongzhu; Zhdanov, Michael

2015-01-01

to be discretized for the calculation of gravity field. This was especially significant in the modeling and inversion of gravity data for determining the depth to the basement. Another important result was developing a novel method of inversion of gravity data to recover the depth to basement, based on the 3D...... Cauchy-type integral representation. Our numerical studies determined that the new method is much faster than conventional volume discretization method to compute the gravity response. Our synthetic model studies also showed that the developed inversion algorithm based on Cauchy-type integral is capable......One of the most important applications of gravity surveys in regional geophysical studies is determining the depth to basement. Conventional methods of solving this problem are based on the spectrum and/or Euler deconvolution analysis of the gravity field and on parameterization of the earth...

Identification of a type of defects in CdTe crystals by the piezo spectroscopic method

International Nuclear Information System (INIS)

Tarbajev, M.Yi.

1999-01-01

The dependence of line shifts and the photoluminescence line intensity of bound exciton complexes on the direction of elastic deformation are studied for CdTe crystals at 4.2 K. On the basis of the found differences in piezo optic behavior of excitons bound to neutral donors and acceptors, the method of identification of a type of defects in CdTe crystals is proposed

A Comparative Characterization of the HPA-MCM-48 Type Catalysts Produced by the Direct Hydrothermal and Room Temperature Synthesis Methods

International Nuclear Information System (INIS)

Gucbilmez, Y.; Calis, I.; Yargic, A. S.

2012-01-01

MCM-48 type support materials synthesized by the direct hydrothermal synthesis (HTS) and room temperature synthesis (RTS) methods were incorporated with tungstophosphoric acid (TPA) in the range of 10-40 wt% by using a wet impregnation technique in methanol solutions. Resulting HPA-MCM-48 catalysts were characterized by the XRD, Nitrogen Physisorption, SEM, TEM, EDS, and FT-IR methods in order to determine the effects of different initial synthesis conditions on the catalyst properties. RTS samples were found to have better crystalline structures, higher BET surface areas, and higher BJH pore volumes than HTS samples. They also had slightly higher TPA incorporation, except for the 40 wt% samples, as evidenced by the EDS results. Keggin ion structure was preserved, for both methods, even at the highest acid loading of 40 wt%. It was concluded that the simpler and more economical RTS method was more successful than the HTS method for hetero poly acid incorporation into MCM-48 type materials

Strategies in filtering in the number field sieve

NARCIS (Netherlands)

S.H. Cavallar

2000-01-01

textabstractA critical step when factoring large integers by the Number Field Sieve consists of finding dependencies in a huge sparse matrix over the field GF(2), using a Block Lanczos algorithm. Both size and weight (the number of non-zero elements) of the matrix critically affect the running time

A generalized variational principle of gravitation

International Nuclear Information System (INIS)

El-Tahir, A.

1987-09-01

Generalized fourth order differential equations of gravitation are derived. Though similar to those earlier obtained by Lanczos, the present derivation is based on more general assumptions. The geometry-gravity dualism is discussed and the nonlinearity of gravitation is shown to be constrained by the curvature of space. (author). 5 refs

Evaluation of plate type fuel elements by eddy current test method

International Nuclear Information System (INIS)

Frade, Rangel Teixeira

2015-01-01

Plate type fuel elements are used in MTR research nuclear reactors. The fuel plates are manufactured by assembling a briquette containing the fissile material inserted in a frame, with metal plates in both sides of the set, to act as a cladding. This set is rolled under controlled conditions in order to obtain the fuel plate. In Brazil, this type of fuel is manufactured by IPEN and used in the IEA-R1 reactor. After fabrication of three batches of fuel plates, 24 plates, one of them is taken, in order to verify the thickness of the cladding. For this purpose, the plate is sectioned and the thickness measurements are carried out by using optical microscopy. This procedure implies in damage of the plate, with the consequent cost. Besides, the process of sample preparation for optical microscopy analysis is time consuming, it is necessary an infrastructure for handling radioactive materials and there is a generation of radioactive residues during the process. The objective of this study was verify the applicability of eddy current test method for nondestructive measurement of cladding thickness in plate type nuclear fuels, enabling the inspection of all manufactured fuel plates. For this purpose, reference standards, representative of the cladding of the fuel plates, were manufactured using thermomechanical processing conditions similar to those used for plates manufacturing. Due to no availability of fuel plates for performing the experiments, the presence of the plate’s core was simulated using materials with different electrical conductivities, fixed to the thickness reference standards. Probes of eddy current testing were designed and manufactured. They showed high sensitivity to thickness variations, being able to separate small thickness changes. The sensitivity was higher in tests performed on the reference standards and samples without the presence of the materials simulating the core. For examination of the cladding with influence of materials simulating the

Quantum molecular dynamics: Numerical methods and physical study of the structure, thermodynamics, stability and fragmentation of sodium metallic clusters; Dynamique moleculaire quantique: Methodes numeriques et etude physique de la structure, de la thermodynamique, de la stabilite et de la fragmentation des agregats metalliques de sodium

Energy Technology Data Exchange (ETDEWEB)

Blaise, Philippe [Universite Joseph Fourier, Grenoble 1, 74 Annecy (France)

1998-09-29

The aim of this thesis is to study metallic sodium clusters by numerical simulation. We have developed two ab initio molecular dynamics programs within the formalism of density functional theory. The first is based on the semi-classical extended Thomas-Fermi approach. We use a real-space grid and a Car-Parrinello-like scheme. The computational cost is O(N), and we have built a pseudopotential that speeds up the calculations. By neglecting quantum shell effects, we are able to study a very large set of clusters. We show that sodium cluster energies fit well a liquid drop formula, by adjusting a few parameters. We have investigated breathing modes, surface oscillations and the net charge density. We have shown that the surface energy varies strongly with temperature, and that clusters have a lower melting point than bulk material. We have calculated fission barriers by a constraint method. The second program is based on the quantum Kohn-Sham approach. We use a real-space grid, and combine a generalized Broyden scheme for assuring self-consistency with an iterative Davidson-Lanczos algorithm for solving the Eigen-problem. The cost of the method is much higher. First of all, we have calculated some stable structures for small clusters and their energetics. We obtained very good agreement with previous works. Then, we have investigated highly charged cluster dynamics. We have identified a chaotic fission process. For high fissility systems, we observe a multi-fragmentation dynamics and we find preferential emission of monomers on a characteristic time scale less than a pico-second. This has been simulated for the first time, with the help of our adaptive grid method which follows each fragment as they move apart during the fragmentation. (author) 87 refs., 57 figs., 4 tabs.

Quantification of beta-cell function during IVGTT in Type II and non-diabetic subjects: assessment of insulin secretion by mathematical methods

DEFF Research Database (Denmark)

Kjems, L L; Vølund, A; Madsbad, Sten

2001-01-01

AIMS/HYPOTHESIS: We compared four methods to assess their accuracy in measuring insulin secretion during an intravenous glucose tolerance test in patients with Type II (non-insulin-dependent) diabetes mellitus and with varying beta-cell function and matched control subjects. METHODS: Eight control...... subjects and eight Type II diabetic patients underwent an intravenous glucose tolerance test with tolbutamide and an intravenous bolus injection of C-peptide to assess C-peptide kinetics. Insulin secretion rates were determined by the Eaton deconvolution (reference method), the Insulin SECretion method...... (ISEC) based on population kinetic parameters as well as one-compartment and two-compartment versions of the combined model of insulin and C-peptide kinetics. To allow a comparison of the accuracy of the four methods, fasting rates and amounts of insulin secreted during the first phase (0-10 min...

Comparative studies on p-type CuI grown on glass and copper substrate by SILAR method

Energy Technology Data Exchange (ETDEWEB)

Dhere, Sunetra L.; Latthe, Sanjay S. [Air Glass Laboratory, Department of Physics, Shivaji University, Kolhapur 416 004, Maharashtra (India); Kappenstein, Charles [University of Poitiers, Laboratory of Catalysis in Organic Chemistry, LA CCO, UMR CNRS 6503, Poitiers-86000 (France); Mukherjee, S.K. [Fuel Chemistry Division, Bhabha Atomic Research Centre, Trombay, Mumbai - 400085, Maharashtra India (India); Rao, A. Venkateswara, E-mail: avrao2012@gmail.com [Air Glass Laboratory, Department of Physics, Shivaji University, Kolhapur 416 004, Maharashtra (India)

2010-04-01

Depending upon the method of synthesis and the nature of substrate surface, there is variation in the physico-chemical properties of the material. Cuprous iodide films are deposited at room temperature on the glass and copper substrates by a simple SILAR method and the obtained results are compared. The p-type material with optical band gap 2.88 eV is found to be possessing face-centered cubic crystal structure with lattice parameter 6.134 A. We observed irregular particles for the CuI film on the glass substrate while patterned arrays of micro-rods with cabbage like tips on copper substrate, for the same preparative conditions. Also, the material deposited on copper is showing superhydrophobic nature (contact angle {approx}156{sup o}) while that on glass it is hydrophilic (contact angle {approx}88{sup o}). We have characterized the thin films by X-ray diffraction, scanning electron microscopy, surface roughness and contact angle measurement, thermoelectric power measurement and optical studies. This hydrophobic, p-type material with wide band gap will be helpful in the development of optoelectronic devices.

Comparative studies on p-type CuI grown on glass and copper substrate by SILAR method

International Nuclear Information System (INIS)

Dhere, Sunetra L.; Latthe, Sanjay S.; Kappenstein, Charles; Mukherjee, S.K.; Rao, A. Venkateswara

2010-01-01

Depending upon the method of synthesis and the nature of substrate surface, there is variation in the physico-chemical properties of the material. Cuprous iodide films are deposited at room temperature on the glass and copper substrates by a simple SILAR method and the obtained results are compared. The p-type material with optical band gap 2.88 eV is found to be possessing face-centered cubic crystal structure with lattice parameter 6.134 A. We observed irregular particles for the CuI film on the glass substrate while patterned arrays of micro-rods with cabbage like tips on copper substrate, for the same preparative conditions. Also, the material deposited on copper is showing superhydrophobic nature (contact angle ∼156 o ) while that on glass it is hydrophilic (contact angle ∼88 o ). We have characterized the thin films by X-ray diffraction, scanning electron microscopy, surface roughness and contact angle measurement, thermoelectric power measurement and optical studies. This hydrophobic, p-type material with wide band gap will be helpful in the development of optoelectronic devices.

Deflation for inversion with multiple right-hand sides in QCD

International Nuclear Information System (INIS)

Stathopoulos, A; Abdel-Rehim, A M; Orginos, K

2009-01-01

Most calculations in lattice Quantum Chromodynamics (QCD) involve the solution of a series of linear systems of equations with exceedingly large matrices and a large number of right hand sides. Iterative methods for these problems can be sped up significantly if we deflate approximations of appropriate invariant spaces from the initial guesses. Recently we have developed eigCG, a modification of the Conjugate Gradient (CG) method, which while solving a linear system can reuse a window of the CG vectors to compute eigenvectors almost as accurately as the Lanczos method. The number of approximate eigenvectors can increase as more systems are solved. In this paper we review some of the characteristics of eigCG and show how it helps remove the critical slowdown in QCD calculations. Moreover, we study scaling with lattice volume and an extension of the technique to nonsymmetric problems.

Studies of the nuclear three-body system with three dimensional Faddeev calculations

Science.gov (United States)

Liu, Hang

A three-body system consists of either a bound state of three particles with definite binding energy or a beam of single particles scattered from a target, where two of the particles are bound. Of the particles are nucleons, the interactions between them are strong and short ranged. A theoretical framework for studying the dynamics of a nuclear three-body system is the Faddeev scheme. In this work the equation for three-body scattering and the bound state are formulated in momentum space, and directly solved in terms of vector variables. For three identical bosons the Faddeev equation for scattering is a three- dimensional inhomogeneous integral equation in five variables, and is solved by Padé summation. The equation for the bound state is a homogeneous one in three variables, and is solved by a Lanczos' type method. The corresponding algorithms are presented, and their numerical feasibility is demonstrated. Elastic as well as inelastic scattering processes in the intermediate energy regime up to 1 GeV incident energy are studied for the first within a Faddeev scheme. The two-body force employed is of Malfliet-Tjon type. Specific emphasis is placed on studying the convergence of the multiple scattering series given by the Faddeev equations. For the bound state, a three-body force of Fujita- Miyazawa type is incorporated in addition to the two-body force. The effects of this three-body force on the bound state properties are investigated.

Asteroseismic modelling of solar-type stars: internal systematics from input physics and surface correction methods

Science.gov (United States)

Nsamba, B.; Campante, T. L.; Monteiro, M. J. P. F. G.; Cunha, M. S.; Rendle, B. M.; Reese, D. R.; Verma, K.

2018-04-01

Asteroseismic forward modelling techniques are being used to determine fundamental properties (e.g. mass, radius, and age) of solar-type stars. The need to take into account all possible sources of error is of paramount importance towards a robust determination of stellar properties. We present a study of 34 solar-type stars for which high signal-to-noise asteroseismic data is available from multi-year Kepler photometry. We explore the internal systematics on the stellar properties, that is, associated with the uncertainty in the input physics used to construct the stellar models. In particular, we explore the systematics arising from: (i) the inclusion of the diffusion of helium and heavy elements; and (ii) the uncertainty in solar metallicity mixture. We also assess the systematics arising from (iii) different surface correction methods used in optimisation/fitting procedures. The systematics arising from comparing results of models with and without diffusion are found to be 0.5%, 0.8%, 2.1%, and 16% in mean density, radius, mass, and age, respectively. The internal systematics in age are significantly larger than the statistical uncertainties. We find the internal systematics resulting from the uncertainty in solar metallicity mixture to be 0.7% in mean density, 0.5% in radius, 1.4% in mass, and 6.7% in age. The surface correction method by Sonoi et al. and Ball & Gizon's two-term correction produce the lowest internal systematics among the different correction methods, namely, ˜1%, ˜1%, ˜2%, and ˜8% in mean density, radius, mass, and age, respectively. Stellar masses obtained using the surface correction methods by Kjeldsen et al. and Ball & Gizon's one-term correction are systematically higher than those obtained using frequency ratios.

Comparison of Chemical Extraction Methods for Determination of Soil Potassium in Different Soil Types

Science.gov (United States)

Zebec, V.; Rastija, D.; Lončarić, Z.; Bensa, A.; Popović, B.; Ivezić, V.

2017-12-01

Determining potassium supply of soil plays an important role in intensive crop production, since it is the basis for balancing nutrients and issuing fertilizer recommendations for achieving high and stable yields within economic feasibility. The aim of this study was to compare the different extraction methods of soil potassium from arable horizon of different types of soils with ammonium lactate method (KAL), which is frequently used as analytical method for determining the accessibility of nutrients and it is a common method used for issuing fertilizer recommendations in many Europe countries. In addition to the ammonium lactate method (KAL, pH 3.75), potassium was extracted with ammonium acetate (KAA, pH 7), ammonium acetate ethylenediaminetetraacetic acid (KAAEDTA, pH 4.6), Bray (KBRAY, pH 2.6) and with barium chloride (K_{BaCl_2 }, pH 8.1). The analyzed soils were extremely heterogeneous with a wide range of determined values. Soil pH reaction ( {pH_{H_2 O} } ) ranged from 4.77 to 8.75, organic matter content ranged from 1.87 to 4.94% and clay content from 8.03 to 37.07%. In relation to KAL method as the standard method, K_{BaCl_2 } method extracts 12.9% more on average of soil potassium, while in relation to standard method, on average KAA extracts 5.3%, KAAEDTA 10.3%, and KBRAY 27.5% less of potassium. Comparison of analyzed extraction methods of potassium from the soil is of high precision, and most reliable comparison was KAL method with KAAEDTA, followed by a: KAA, K_{BaCl_2 } and KBRAY method. Extremely significant statistical correlation between different extractive methods for determining potassium in the soil indicates that any of the methods can be used to accurately predict the concentration of potassium in the soil, and that carried out research can be used to create prediction model for concentration of potassium based on different methods of extraction.

Primary and secondary battery consumption trends in Sweden 1996–2013: Method development and detailed accounting by battery type

International Nuclear Information System (INIS)

Patrício, João; Kalmykova, Yuliya; Berg, Per E.O.; Rosado, Leonardo; Åberg, Helena

2015-01-01

Highlights: • Developed MFA method was validated by the national statistics. • Exponential increase of EEE sales leads to increase in integrated battery consumption. • Digital convergence is likely to be a cause for primary batteries consumption decline. • Factors for estimation of integrated batteries in EE are provided. • Sweden reached the collection rates defined by European Union. - Abstract: In this article, a new method based on Material Flow Accounting is proposed to study detailed material flows in battery consumption that can be replicated for other countries. The method uses regularly available statistics on import, industrial production and export of batteries and battery-containing electric and electronic equipment (EEE). To promote method use by other scholars with no access to such data, several empirically results and their trends over time, for different types of batteries occurrence among the EEE types are provided. The information provided by the method can be used to: identify drivers of battery consumption; study the dynamic behavior of battery flows – due to technology development, policies, consumers behavior and infrastructures. The method is exemplified by the study of battery flows in Sweden for years 1996–2013. The batteries were accounted, both in units and weight, as primary and secondary batteries; loose and integrated; by electrochemical composition and share of battery use between different types of EEE. Results show that, despite a fivefold increase in the consumption of rechargeable batteries, they account for only about 14% of total use of portable batteries. Recent increase in digital convergence has resulted in a sharp decline in the consumption of primary batteries, which has now stabilized at a fairly low level. Conversely, the consumption of integrated batteries has increased sharply. In 2013, 61% of the total weight of batteries sold in Sweden was collected, and for the particular case of alkaline manganese

Primary and secondary battery consumption trends in Sweden 1996–2013: Method development and detailed accounting by battery type

Energy Technology Data Exchange (ETDEWEB)

Patrício, João, E-mail: joao.patricio@chalmers.se [Department of Civil and Environmental Engineering, Chalmers University of Technology, 412 96 Gothenburg (Sweden); Kalmykova, Yuliya; Berg, Per E.O.; Rosado, Leonardo [Department of Civil and Environmental Engineering, Chalmers University of Technology, 412 96 Gothenburg (Sweden); Åberg, Helena [The Faculty of Education, University of Gothenburg, 40530 Gothenburg (Sweden)

2015-05-15

Highlights: • Developed MFA method was validated by the national statistics. • Exponential increase of EEE sales leads to increase in integrated battery consumption. • Digital convergence is likely to be a cause for primary batteries consumption decline. • Factors for estimation of integrated batteries in EE are provided. • Sweden reached the collection rates defined by European Union. - Abstract: In this article, a new method based on Material Flow Accounting is proposed to study detailed material flows in battery consumption that can be replicated for other countries. The method uses regularly available statistics on import, industrial production and export of batteries and battery-containing electric and electronic equipment (EEE). To promote method use by other scholars with no access to such data, several empirically results and their trends over time, for different types of batteries occurrence among the EEE types are provided. The information provided by the method can be used to: identify drivers of battery consumption; study the dynamic behavior of battery flows – due to technology development, policies, consumers behavior and infrastructures. The method is exemplified by the study of battery flows in Sweden for years 1996–2013. The batteries were accounted, both in units and weight, as primary and secondary batteries; loose and integrated; by electrochemical composition and share of battery use between different types of EEE. Results show that, despite a fivefold increase in the consumption of rechargeable batteries, they account for only about 14% of total use of portable batteries. Recent increase in digital convergence has resulted in a sharp decline in the consumption of primary batteries, which has now stabilized at a fairly low level. Conversely, the consumption of integrated batteries has increased sharply. In 2013, 61% of the total weight of batteries sold in Sweden was collected, and for the particular case of alkaline manganese

Method of determining the composition of fuels for FBR type reactors

International Nuclear Information System (INIS)

Tsutsumi, Kiyoshi.

1981-01-01

Purpose: To improve the core safety of FBR type reactors by determining the composition of fuels composed of oxide mixture of plutonium and uranium, using a relation between specific plutonium seed and plutonium enrichment degree. Method: Relation is determined between the ratio of a specific plutonium seed for constituting plutonium oxide, for example 239 U ratio and a plutonium enrichment degree required for setting the assembly power to a constant level. The ratio of 239 U is plutonium having a given isotopic ratio is also determined. The accuracy of the 239 U ratio can be improved by the correction using the density coefficient. Then, the plutonium enrichment degree is determined using the relation determined as above based on the thus determined 239 U ratio. The composition of the fuel using oxide mixture of plutonium and uranium is determined by utilizing the thus obtained plutonium enrichment degree. (Moriyama, K.)

TYPE II-P SUPERNOVAE FROM THE SDSS-II SUPERNOVA SURVEY AND THE STANDARDIZED CANDLE METHOD

International Nuclear Information System (INIS)

D'Andrea, Chris B.; Sako, Masao; Dilday, Benjamin; Jha, Saurabh; Frieman, Joshua A.; Kessler, Richard; Holtzman, Jon; Konishi, Kohki; Yasuda, Naoki; Schneider, D. P.; Sollerman, Jesper; Wheeler, J. Craig; Cinabro, David; Nichol, Robert C.; Lampeitl, Hubert; Smith, Mathew; Atlee, David W.; Bassett, Bruce; Castander, Francisco J.; Goobar, Ariel

2010-01-01

We apply the Standardized Candle Method (SCM) for Type II Plateau supernovae (SNe II-P), which relates the velocity of the ejecta of a SN to its luminosity during the plateau, to 15 SNe II-P discovered over the three season run of the Sloan Digital Sky Survey-II Supernova Survey. The redshifts of these SNe-0.027 0.01) as all of the current literature on the SCM combined. We find that the SDSS SNe have a very small intrinsic I-band dispersion (0.22 mag), which can be attributed to selection effects. When the SCM is applied to the combined SDSS-plus-literature set of SNe II-P, the dispersion increases to 0.29 mag, larger than the scatter for either set of SNe separately. We show that the standardization cannot be further improved by eliminating SNe with positive plateau decline rates, as proposed in Poznanski et al. We thoroughly examine all potential systematic effects and conclude that for the SCM to be useful for cosmology, the methods currently used to determine the Fe II velocity at day 50 must be improved, and spectral templates able to encompass the intrinsic variations of Type II-P SNe will be needed.

Objectivity of two methods of differentiating fibre types and repeatability of measurements by application of the TEMA image analysis system.

Science.gov (United States)

Henckel, P; Ducro, B; Oksbjerg, N; Hassing, L

1998-01-01

The objectivity of two of the most widely used methods for differentiation of fibre types, i.e. 1) the myosin ATP-ase method (Brooke and Kaiser, 1970a,b) and 2) the combined method, by which the myosin ATP-ase reaction is used to differentiate between fast and slow twitch fibres and NADH-tetrazolium reductase activity is used to identify the subgroups of fast twitch fibres (Ashmore and Doerr, 1970, Peter et al., 1972), was assessed in muscle samples from horses, calves and pigs. We also assessed the objectivity of the alpha-amylase-PAS preparation for the visualisation of capillaries (Andersen, 1975) in these species. For the purpose of reducing the time costs of histochemical analysis of muscle samples, we have developed an interactive image analysis system which is described. All analyses are performed on this system. In accordance with several other investigations, differences between the two methods of differentiating fibre types were found only for the relative distribution of the fast-twitch fibre subgroups (p 87%), the impact of differences in pre-requisites (varied degrees of overlap between the fibre types) for performing the differentiation by the combined method raises a question of the reliability of this method. Apparently, no general rules for comparison of results of distribution of the two subgroups of fast twitch fibres by the two methods are applicable. The alpha-amylase-PAS method was found to be a fairly objective method to identify capillaries in muscles from horses, calves and pigs. However, as capillarity described in combination with other traits to give an indication of diffusion characteristics is significantly influenced by person, it is recommended that the same person perform all the analysis of a project. In addition to the methodological results in this study, we have shown that by application of the TEMA image analysis system, which is more rapid compared with the time-consuming traditional method for evaluation of histochemical

Correlation of zero-point energy with molecular structure and molecular forces. 1. Development of the approximation

International Nuclear Information System (INIS)

Oi, T.; Ishida, T.

1983-01-01

An approximation formula for the zero-point energy (ZPE) has been developed on the basis of Lanczos' tau method in which the ZPE has been expressed in terms of the traces of positive integral powers of the FG matrix. It requires two approximation parameters, i.e., a normalization reference point in a domain of vibration eigenvalues and a range for the purpose of expansion. These parameters have been determined for two special cases as well as for general situation at various values of a weighting function parameter. The approximation method has been tested on water, carbon dioxide, formaldehyde, and methane. The relative errors are 3% or less for the molecules examined, and the best choice of the parameters moderately depends on the frequency distribution. 25 references, 2 figures, 9 tables

Application of comprehensive geophysical methods to prospecting for sandstone-type uranium deposit in Bayanmaodu basin

International Nuclear Information System (INIS)

Yao Yifeng; Sun Zexuan; Chen Zhiguo; He Tao; Li Guoxin

2003-01-01

By using comprehensive geophysical methods including magnetic survey, resistivity sounding, self potential survey, 210 Po survey etc., the shape and the depth of the basement, the structure of the sedimentary cover, characteristics of prospecting target horizon, the development of interlayer oxidation zone at depth, as well as the information of uranium mineralization have been basically revealed, thus providing a basis for the prospect evaluation of sandstone-type uranium mineralization in the basin

AUTOMATIC RECOGNITION OF CORONAL TYPE II RADIO BURSTS: THE AUTOMATED RADIO BURST IDENTIFICATION SYSTEM METHOD AND FIRST OBSERVATIONS

International Nuclear Information System (INIS)

Lobzin, Vasili V.; Cairns, Iver H.; Robinson, Peter A.; Steward, Graham; Patterson, Garth

2010-01-01

Major space weather events such as solar flares and coronal mass ejections are usually accompanied by solar radio bursts, which can potentially be used for real-time space weather forecasts. Type II radio bursts are produced near the local plasma frequency and its harmonic by fast electrons accelerated by a shock wave moving through the corona and solar wind with a typical speed of ∼1000 km s -1 . The coronal bursts have dynamic spectra with frequency gradually falling with time and durations of several minutes. This Letter presents a new method developed to detect type II coronal radio bursts automatically and describes its implementation in an extended Automated Radio Burst Identification System (ARBIS 2). Preliminary tests of the method with spectra obtained in 2002 show that the performance of the current implementation is quite high, ∼80%, while the probability of false positives is reasonably low, with one false positive per 100-200 hr for high solar activity and less than one false event per 10000 hr for low solar activity periods. The first automatically detected coronal type II radio burst is also presented.

Evaluation of Acute Aortic Dissection Type a Factors and Comparison the Postoperative Clinical Outcomes between Two Surgical Methods.

Science.gov (United States)

Shemirani, Hasan; Mirmohamadsadeghi, Amir; Mahaki, Behzad; Farhadi, Sadaf; Badalabadi, Reza Mohseni; Bidram, Peyman; Badalabadi, Mehdi Mohseni

2017-01-01

Although aortic dissection is a rare disease, it causes high level of mortality. If ascending aorta gets involved in this disease, it is known as type A. According to small number of studies about this disease in Iran, this study conducted to detect the factors related to acute aortic dissection type A, its surgery consequences and the factors affecting them. In this historical cohort study, all patients having acute aortic dissection type A referring to Chamran Hospital from 2006 to 2012 were studied. The impact of two surgical methods including antegrade cerebral perfusion (ACP) and retrograde cerebral one (RCP) on surgical and long-term mortality and recurrence of dissection was determined. The relation of mortality rate and hemodynamic instability before surgery, age more than 70 years old, ejection fraction lower than 50%, prolonged cardiopulmonary bypass pump (CPBP) time and excessive blood transfusion, was assessed. Surgery and long-term mortality and recurrence of dissection were 35.3%, 30.8% and 30.4%. Surgical and long-term death in the patients being operated by ACP method was lower than those one being operated by RCP ( P RCP according to the surgical and long-term mortality.

Distal tibial pilon fractures (AO/OTA type B, and C treated with the external skeletal and minimal internal fixation method

Directory of Open Access Journals (Sweden)

Milenković Saša

2013-01-01

Full Text Available Background/Aim. Distal tibial pilon fractures include extra-articular fractures of the tibial metaphysis and the more severe intra-articular tibial pilon fractures. There is no universal method for treating distal tibial pilon fractures. These fractures are treated by means of open reduction, internal fixation (ORIF and external skeletal fixation. The high rate of soft-tissue complications associated with primary ORIF of pilon fractures led to the use of external skeletal fixation, with limited internal fixation as an alternative technique for definitive management. The aim of this study was to estimate efficacy of distal tibial pilon fratures treatment using the external skeletal and minimal internal fixation method. Methods. We presented a series of 31 operated patients with tibial pilon fractures. The patients were operated on using the method of external skeletal fixation with a minimal internal fixation. According to the AO/OTA classification, 17 patients had type B fracture and 14 patients type C fractures. The rigid external skeletal fixation was transformed into a dynamic external skeletal fixation 6 weeks post-surgery. Results. This retrospective study involved 31 patients with tibial pilon fractures, average age 41.81 (from 21 to 60 years. The average follow-up was 21.86 (from 12 to 48 months. The percentage of union was 90.32%, nonunion 3.22% and malunion 6.45%. The mean to fracture union was 14 (range 12-20 weeks. There were 4 (12.19% infections around the pins of the external skeletal fixator and one (3.22% deep infections. The ankle joint arthrosis as a late complication appeared in 4 (12.90% patients. All arthroses appeared in patients who had type C fractures. The final functional results based on the AOFAS score were excellent in 51.61%, good in 32.25%, average in 12.90% and bad in 3.22% of the patients. Conclusion. External skeletal fixation and minimal internal fixation of distal tibial pilon fractures is a good method for

Assessment guidance of carbohydrate counting method in patients with type 2 diabetes mellitus.

Science.gov (United States)

Martins, Michelle R; Ambrosio, Ana Cristina T; Nery, Marcia; Aquino, Rita de Cássia; Queiroz, Marcia S

2014-04-01

We evaluated the application of the method of carbohydrate counting performed by 21 patients with type 2 diabetes, 1 year later attending a guidance course. Participants answered a questionnaire to assess patients' adhesion to carbohydrate counting as well as to identify habit changes and the method's applicability, and values of glycated hemoglobin were also analyzed. Most participants (76%) were females, and 25% of them had obesity degree III. There was a statistically significant decrease in glycated hemoglobin from 8.42±0.02% to 7.66±0.01% comparing values before and after counseling. We observed that although patients stated that the method was difficult they understood that carbohydrate counting could allow them make choices and have more freedom in their meals; we also verified if they understood accurately how to replace some foods used regularly in their diets and most patients correctly chose replacements for the groups of bread (76%), beans (67%) and noodles (67%). We concluded that participation in the course led to improved blood glucose control with a significant reduction of glycated hemoglobin, better understanding of food groups and the adoption of healthier eating habits. Copyright © 2013 Primary Care Diabetes Europe. Published by Elsevier Ltd. All rights reserved.

An improved early detection method of type-2 diabetes mellitus using multiple classifier system

KAUST Repository

Zhu, Jia

2015-01-01

The specific causes of complex diseases such as Type-2 Diabetes Mellitus (T2DM) have not yet been identified. Nevertheless, many medical science researchers believe that complex diseases are caused by a combination of genetic, environmental, and lifestyle factors. Detection of such diseases becomes an issue because it is not free from false presumptions and is accompanied by unpredictable effects. Given the greatly increased amount of data gathered in medical databases, data mining has been used widely in recent years to detect and improve the diagnosis of complex diseases. However, past research showed that no single classifier can be considered optimal for all problems. Therefore, in this paper, we focus on employing multiple classifier systems to improve the accuracy of detection for complex diseases, such as T2DM. We proposed a dynamic weighted voting scheme called multiple factors weighted combination for classifiers\\' decision combination. This method considers not only the local and global accuracy but also the diversity among classifiers and localized generalization error of each classifier. We evaluated our method on two real T2DM data sets and other medical data sets. The favorable results indicated that our proposed method significantly outperforms individual classifiers and other fusion methods.

Distal tibial pilon fractures (AO/OTA type B, and C) treated with the external skeletal and minimal internal fixation method.

Science.gov (United States)

Milenković, Sasa; Mitković, Milorad; Micić, Ivan; Mladenović, Desimir; Najman, Stevo; Trajanović, Miroslav; Manić, Miodrag; Mitković, Milan

2013-09-01

Distal tibial pilon fractures include extra-articular fractures of the tibial metaphysis and the more severe intra-articular tibial pilon fractures. There is no universal method for treating distal tibial pilon fractures. These fractures are treated by means of open reduction, internal fixation (ORIF) and external skeletal fixation. The high rate of soft-tissue complications associated with primary ORIF of pilon fractures led to the use of external skeletal fixation, with limited internal fixation as an alternative technique for definitive management. The aim of this study was to estimate efficacy of distal tibial pilon fratures treatment using the external skeletal and minimal internal fixation method. We presented a series of 31 operated patients with tibial pilon fractures. The patients were operated on using the method of external skeletal fixation with a minimal internal fixation. According to the AO/OTA classification, 17 patients had type B fracture and 14 patients type C fractures. The rigid external skeletal fixation was transformed into a dynamic external skeletal fixation 6 weeks post-surgery. This retrospective study involved 31 patients with tibial pilon fractures, average age 41.81 (from 21 to 60) years. The average follow-up was 21.86 (from 12 to 48) months. The percentage of union was 90.32%, nonunion 3.22% and malunion 6.45%. The mean to fracture union was 14 (range 12-20) weeks. There were 4 (12.19%) infections around the pins of the external skeletal fixator and one (3.22%) deep infections. The ankle joint arthrosis as a late complication appeared in 4 (12.90%) patients. All arthroses appeared in patients who had type C fractures. The final functional results based on the AOFAS score were excellent in 51.61%, good in 32.25%, average in 12.90% and bad in 3.22% of the patients. External skeletal fixation and minimal internal fixation of distal tibial pilon fractures is a good method for treating all types of inta-articular pilon fractures. In

Comprehensive geophysical and geochemical method and prognosis criteria for the exploration of unconformity type uranium deposit in Russia

International Nuclear Information System (INIS)

Li Mao; Chen Zuyi

2007-01-01

According to the transcripts of the lectures by Russian experts during the investigation and training in Russia, the comprehensive geophysical and geochemical method and the prognosis criteria of Russia's unconformity type uranium deposit exploration are introduced in the paper. (authors)

Euler–Chern–Simons gravity from Lovelock–Born–Infeld gravity

OpenAIRE

Izaurieta, F.; Rodriguez, E.; Salgado, P.

2004-01-01

In the context of a gauge theoretical formulation, higher dimensional gravity invariant under the AdS group is dimensionally reduced to Euler-Chern-Simons gravity. The dimensional reduction procedure of Grignani-Nardelli [Phys. Lett. B 300, 38 (1993)] is generalized so as to permit reducing D-dimensional Lanczos Lovelock gravity to d=D-1 dimensions.

Compactly Supported Curvelet-Type Systems

DEFF Research Database (Denmark)

Rasmussen, Kenneth Niemann; Nielsen, Morten

2012-01-01

We study a flexible method for constructing curvelet-type frames. These curvelet-type systems have the same sparse representation properties as curvelets for appropriate classes of smooth functions, and the flexibility of the method allows us to give a constructive description of how to construct...... curvelet-type systems with a prescribed nature such as compact support in direct space. The method consists of using the machinery of almost diagonal matrices to show that a system of curvelet molecules which is sufficiently close to curvelets constitutes a frame for curvelet-type spaces. Such a system...

Method of recovering phosphoric acid type decontaminating electrolytes by electrodeposition

International Nuclear Information System (INIS)

Sasaki, Takashi; Wada, Koichi; Kobayashi, Toshio.

1985-01-01

Purpose: To recoving phosphoric acid type highly concentrated decontaminating liquid used for the electrolytic decontamination of contaminated equipments, components, etc in nuclear power plants or the like through electrodeposition by diaphragm electrolysis. Method: Before supplying phosphoric acid decontaminating liquid at high concentration used in the electrolytic decontaminating step to an electrodeposition recovering tank, phosphoric acid in the decontaminating electrolyte is extracted with solvents and decomposed liquid extracts (electrolyte reduced with the phosphoric acid component) are supplied to the cathode chamber of the electrodeposition recovering tank, where phosphoric acid is back-extracted with water from the solvents after extraction of phosphoric acid. Then, the back-extracted liquids (aqueous phosphoric acid solution scarcely containing metal ions) are sent to the anode chamber of the electrodeposition recovering tank. Metal ions in the liquid are captured by electrodeposition in the cathode chamber, as well as phosphoric acid in the liquids is concentrated to the initial concentration of the electrolyte in the anode chamber for reuse as the decontaminating electrolyte. As the phosphoric acid extracting agent used in the electrodeposition recovering step for the decontaminating electrolyte, water-insoluble and non-combustible tributyl phosphate (TBP) is most effective. (Horiuchi, T.)

Inverse airfoil design method for low-speed straight-bladed Darrieus-type VAWT applications

Energy Technology Data Exchange (ETDEWEB)

Saeed, F. [King Fahd Univ. of Petroleum and Minerals, Dhahran (Saudi Arabia); Paraschivoiu, I.; Trifu, O. [Ecole Polytechnique, Montreal, PQ (Canada); Hess, M.; Gabrys, C. [Mariah Power Inc., Reno, NV (United States)

2008-07-01

Inverse airfoil design of a low-speed straight-bladed Darrieus-type vertical axis wind turbine (VAWT) can help improve aerodynamic performance and power output by eliminating undesirable flow field characteristics at very low Reynolds number. This study used an interactive inverse airfoil design method (PROFOIL) that allows specification of velocity and boundary-layer characteristics over different segments of the airfoil subject to constraints on the geometry (closure) and the flow field (far field boundary). Additional constraints were also considered to address pitching moment coefficient, thickness and the power output for a given tip-speed ratio. Performance analyses of the airfoil and the VAWT were carried out using state-of-the-art analyses codes XFOIL and CARDAAV, respectively. XFOIL is a panel method with a coupled boundary-layer scheme and is used to obtain the aerodynamic characteristics of resulting airfoil shapes. The final airfoil geometry is obtained through a multi-dimensional Newton iteration. The study showed that the strength of the method lies in the inverse design methodology whereas its weaknesses is in reliably predicting aerodynamic characteristics of airfoils at low Reynolds numbers and high angles of attack. A 10-15 per cent increase in the relative performance of the VAWT was achieved with this method. Although the results of the study showed that the method has great application potential for VAWTs in general, there is much room for improvement in flow analysis capabilities for low Re flows in reliably predicting post-stall aerodynamic characteristics. In the absence of such analysis capabilities, the authors suggested that the results should be viewed qualitatively and not quantitatively. 36 refs., 1 tab., 4 figs.

Verification of rapid method for estimation of added food colorant type in boiled sausages based on measurement of cross section color

Science.gov (United States)

Jovanović, J.; Petronijević, R. B.; Lukić, M.; Karan, D.; Parunović, N.; Branković-Lazić, I.

2017-09-01

During the previous development of a chemometric method for estimating the amount of added colorant in meat products, it was noticed that the natural colorant most commonly added to boiled sausages, E 120, has different CIE-LAB behavior compared to artificial colors that are used for the same purpose. This has opened the possibility of transforming the developed method into a method for identifying the addition of natural or synthetic colorants in boiled sausages based on the measurement of the color of the cross-section. After recalibration of the CIE-LAB method using linear discriminant analysis, verification was performed on 76 boiled sausages, of either frankfurters or Parisian sausage types. The accuracy and reliability of the classification was confirmed by comparison with the standard HPLC method. Results showed that the LDA + CIE-LAB method can be applied with high accuracy, 93.42 %, to estimate food color type in boiled sausages. Natural orange colors can give false positive results. Pigments from spice mixtures had no significant effect on CIE-LAB results.

Method and apparatus for checking the stability of a setup for making reflection type holograms

Science.gov (United States)

Lackner, H. G. (Inventor)

1974-01-01

A method and apparatus are described for checking the stability of a setup for recording reflection-type (white light) holograms. Two sets of interference fringes are simultaneously obtained, one giving information about coherence and stability of the setup alone and the other demonstrating coherence of the entire system, including the holographic recording plate. Special emphasis is given to the stability of the plate, due to the fact that any minute vibration might severely degrade or completely destroy the recording.

Burnup-dependent core neutronics analysis of plate-type research reactor using deterministic and stochastic methods

International Nuclear Information System (INIS)

Liu, Shichang; Wang, Guanbo; Liang, Jingang; Wu, Gaochen; Wang, Kan

2015-01-01

Highlights: • DRAGON & DONJON were applied in burnup calculations of plate-type research reactors. • Continuous-energy Monte Carlo burnup calculations by RMC were chosen as references. • Comparisons of keff, isotopic densities and power distribution were performed. • Reasons leading to discrepancies between two different approaches were analyzed. • DRAGON & DONJON is capable of burnup calculations with appropriate treatments. - Abstract: The burnup-dependent core neutronics analysis of the plate-type research reactors such as JRR-3M poses a challenge for traditional neutronics calculational tools and schemes for power reactors, due to the characteristics of complex geometry, highly heterogeneity, large leakage and the particular neutron spectrum of the research reactors. Two different theoretical approaches, the deterministic and the stochastic methods, are used for the burnup-dependent core neutronics analysis of the JRR-3M plate-type research reactor in this paper. For the deterministic method the neutronics codes DRAGON & DONJON are used, while the continuous-energy Monte Carlo code RMC (Reactor Monte Carlo code) is employed for the stochastic one. In the first stage, the homogenizations of few-group cross sections by DRAGON and the full core diffusion calculations by DONJON have been verified by comparing with the detailed Monte Carlo simulations. In the second stage, the burnup-dependent calculations of both assembly level and the full core level were carried out, to examine the capability of the deterministic code system DRAGON & DONJON to reliably simulate the burnup-dependent behavior of research reactors. The results indicate that both RMC and DRAGON & DONJON code system are capable of burnup-dependent neutronics analysis of research reactors, provided that appropriate treatments are applied in both assembly and core levels for the deterministic codes

Implicit high-order discontinuous Galerkin method with HWENO type limiters for steady viscous flow simulations

Science.gov (United States)

Jiang, Zhen-Hua; Yan, Chao; Yu, Jian

2013-08-01

Two types of implicit algorithms have been improved for high order discontinuous Galerkin (DG) method to solve compressible Navier-Stokes (NS) equations on triangular grids. A block lower-upper symmetric Gauss-Seidel (BLU-SGS) approach is implemented as a nonlinear iterative scheme. And a modified LU-SGS (LLU-SGS) approach is suggested to reduce the memory requirements while retain the good convergence performance of the original LU-SGS approach. Both implicit schemes have the significant advantage that only the diagonal block matrix is stored. The resulting implicit high-order DG methods are applied, in combination with Hermite weighted essentially non-oscillatory (HWENO) limiters, to solve viscous flow problems. Numerical results demonstrate that the present implicit methods are able to achieve significant efficiency improvements over explicit counterparts and for viscous flows with shocks, and the HWENO limiters can be used to achieve the desired essentially non-oscillatory shock transition and the designed high-order accuracy simultaneously.

Superconducting, magnetic, and charge correlations in the doped two-chain Hubbard model

International Nuclear Information System (INIS)

Asai, Y.

1995-01-01

We have studied the superconducting, magnetic, and charge correlation functions and the spin excitation spectrum in the doped two-chain Hubbard model by projector Monte Carlo and Lanczos diagonalization methods. The exponent of the interchain singlet superconducting correlation function, γ, is found to be close to 2.0 as long as two distinct noninteracting bands cross the Fermi level. Magnetic and charge correlation functions decay more rapidly than or as fast as the interchain singlet superconducting correlation function along the chains. The superconducting correlation in the doped two-chain Hubbard model is the most long-range correlation studied here. Implications of the results for the possible universality class of the doped two-chain Hubbard model are discussed

PERFORMANCE EVALUATION OF TURKISH TYPE A MUTUAL FUNDS AND PENSION STOCK FUNDS BY USING TOPSIS METHOD

Directory of Open Access Journals (Sweden)

Nesrin ALPTEKIN

2009-07-01

Full Text Available In this paper, it is evaluated performance of Turkish Type A mutual funds and pension stock funds by using TOPSIS method which is a multicriteria decision making approach. Both of these funds compose of stocks in their portfolios, so it can be enabled to compare each other. Generally, mutual or pension funds are evaluated according to their risk and return. At this point, it is used traditional performance measurement techniques of funds like Sharpe ratio, Sortino ratio, Treynor index and Jensen’s alpha. TOPSIS method takes into consideration all of these fund performance measurement techniques and provides more reasonable performance measurement.

Web-based depression treatment for type 1 and type 2 diabetic patients

DEFF Research Database (Denmark)

van Bastelaar, Kim M P; Pouwer, Francois; Cuijpers, Pim

2011-01-01

intervention on a large scale at relatively low costs. This study evaluated the effectiveness of Web-based CBT for depression treatment in adults with type 1 or type 2 diabetes, with minimal guidance. RESEARCH DESIGN AND METHODS: A randomized controlled trial was conducted in the Netherlands in 255 adult...... no beneficial effect on glycemic control (P > 0.05). CONCLUSIONS: Web-based CBT depression treatment is effective in reducing depressive symptoms in adults with type 1 and type 2 diabetes. In addition, the intervention reduces diabetes-specific emotional distress in depressed patients.......OBJECTIVE: Comorbid depression is common in patients with type 1 and type 2 diabetes, adversely affecting quality of life, diabetes outcomes, and mortality. Depression can be effectively treated with cognitive behavior therapy (CBT). The Internet is a new and attractive method for delivering CBT...

Robust Grid-Current-Feedback Resonance Suppression Method for LCL-Type Grid-Connected Inverter Connected to Weak Grid

DEFF Research Database (Denmark)

Zhou, Xiaoping; Zhou, Leming; Chen, Yandong

2018-01-01

In this paper, a robust grid-current-feedback reso-nance suppression (GCFRS) method for LCL-type grid-connected inverter is proposed to enhance the system damping without introducing the switching noise and eliminate the impact of control delay on system robustness against grid-impedance variation....... It is composed of GCFRS method, the full duty-ratio and zero-beat-lag PWM method, and the lead-grid-current-feedback-resonance-suppression (LGCFRS) method. Firstly, the GCFRS is used to suppress the LCL-resonant peak well and avoid introducing the switching noise. Secondly, the proposed full duty-ratio and zero......-beat-lag PWM method is used to elimi-nate the one-beat-lag computation delay without introducing duty cycle limitations. Moreover, it can also realize the smooth switching from positive to negative half-wave of the grid current and improve the waveform quality. Thirdly, the proposed LGCFRS is used to further...

Method for the typing of Clostridium difficile based on polyacrylamide gel electrophoresis of [35S]methionine-labeled proteins

International Nuclear Information System (INIS)

Tabaqchali, S.; O'Farrell, S.; Holland, D.; Silman, R.

1986-01-01

A typing method for Clostridium difficile based on the incorporation of [ 35 S]methionine into cellular proteins, their separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and their visualization by autoradiography is described. On analysis of the radiolabeled-protein profiles, nine distinct groups were observed (A to E and W to Z). The method, which is simple, reproducible, and readily expandable, has been applied in epidemiological studies to demonstrate cross-infection and hospital acquisition of C. difficile

Scale Space Methods for Analysis of Type 2 Diabetes Patients' Blood Glucose Values

Directory of Open Access Journals (Sweden)

Stein Olav Skrøvseth

2011-01-01

Full Text Available We describe how scale space methods can be used for quantitative analysis of blood glucose concentrations from type 2 diabetes patients. Blood glucose values were recorded voluntarily by the patients over one full year as part of a self-management process, where the time and frequency of the recordings are decided by the patients. This makes a unique dataset in its extent, though with a large variation in reliability of the recordings. Scale space and frequency space techniques are suited to reveal important features of unevenly sampled data, and useful for identifying medically relevant features for use both by patients as part of their self-management process, and provide useful information for physicians.

Evaluation of Acute Aortic Dissection Type a Factors and Comparison the Postoperative Clinical Outcomes between Two Surgical Methods

Directory of Open Access Journals (Sweden)

Hasan Shemirani

2017-01-01

Full Text Available Background: Although aortic dissection is a rare disease, it causes high level of mortality. If ascending aorta gets involved in this disease, it is known as type A. According to small number of studies about this disease in Iran, this study conducted to detect the factors related to acute aortic dissection type A, its surgery consequences and the factors affecting them. Materials and Methods: In this historical cohort study, all patients having acute aortic dissection type A referring to Chamran Hospital from 2006 to 2012 were studied. The impact of two surgical methods including antegrade cerebral perfusion (ACP and retrograde cerebral one (RCP on surgical and long-term mortality and recurrence of dissection was determined. The relation of mortality rate and hemodynamic instability before surgery, age more than 70 years old, ejection fraction lower than 50%, prolonged cardiopulmonary bypass pump (CPBP time and excessive blood transfusion, was assessed. Results: Surgery and long-term mortality and recurrence of dissection were 35.3%, 30.8% and 30.4%. Surgical and long-term death in the patients being operated by ACP method was lower than those one being operated by RCP (P < 0.001. Excessive blood transfusion and unstable hemodynamic condition had significant effect on surgical mortality (P = 0.014, 0.030, respectively. CPBP time and unstable hemodynamic condition affected long-term mortality significantly (P = 0.002. Conclusion: The result found that ACP is the preferable kind of surgery in comparison with RCP according to the surgical and long-term mortality.

[Comparative study on Chinese medical syndrome typing and treatment combined different surgical methods for treating clomiphene-resistant polycystic ovary syndrome].

Science.gov (United States)

Zeng, Lei; Zeng, Cheng; Tao, Li-Li

2012-11-01

To observe the therapeutic efficacy of Chinese medical syndrome typing and treatment combined cold needle puncture drainage operation or unipolar electrocoagulation drilling technique under laparoscope for treating clomiphene-resistant polycystic ovary syndrome (PCOS). Forty infertility patients with clomiphene-resistant PCOS were assigned to two groups using stratified random sampling method according to age, infertility time, and body mass index, 20 in each group. Patients in Group A were treated with Chinese medical syndrome typing and treatment combined cold needle puncture drainage operation, while those in Group B were treated with Chinese medical syndrome typing and treatment combined unipolar electrocoagulation drilling technique. After operation Chinese herbal treatment was administered to all patients according to syndrome typing. The serum levels of luteinizing hormone (LH), follicle stimulating hormone (FSH), androgen (T), estradiol (E2), and prolactin (PRL) were determined before and after operation. The ovulation was monitored. The pregnancy rate and the pregnancy outcomes were recorded after operation. There was no statistical difference in the 3-month spontaneous ovulation rate or the 1-year pregnancy rate (P > 0.05). The levels of LH, T, and PRL were significantly lower after operation than before operation in the two groups (P typing and treatment combined cold needle puncture drainage operation or unipolar electrocoagulation drilling technique could effectively promote the ovulation. The two methods showed similar therapeutic effects.

Development and Evaluation of a PCR and Mass Spectroscopy-based (PCR-MS) Method for Quantitative, Type-specific Detection of Human Papillomavirus

Science.gov (United States)

Patel, Divya A.; Shih, Yang-Jen; Newton, Duane W.; Michael, Claire W.; Oeth, Paul A.; Kane, Michael D.; Opipari, Anthony W.; Ruffin, Mack T.; Kalikin, Linda M.; Kurnit, David M.

2010-01-01

Knowledge of the central role of high-risk human papillomavirus (HPV) in cervical carcinogenesis, coupled with an emerging need to monitor the efficacy of newly introduced HPV vaccines, warrant development and evaluation of type-specific, quantitative HPV detection methods. In the present study, a prototype PCR and mass spectroscopy (PCR-MS)-based method to detect and quantitate 13 high-risk HPV types is compared to the Hybrid Capture 2 High Risk HPV DNA test (HC2; Digene Corp., Gaithersburg, MD) in 199 cervical scraping samples and to DNA sequencing in 77 cervical tumor samples. High-risk HPV types were detected in 76/77 (98.7%) cervical tumor samples by PCR-MS. Degenerate and type-specific sequencing confirmed the types detected by PCR-MS. In 199 cervical scraping samples, all 13 HPV types were detected by PCR-MS. Eighteen (14.5%) of 124 cervical scraping samples that were positive for high-risk HPV by HC2 were negative by PCR-MS. In all these cases, degenerate DNA sequencing failed to detect any of the 13 high-risk HPV types. Nearly half (46.7%) of the 75 cervical scraping samples that were negative for high-risk HPV by the HC2 assay were positive by PCR-MS. Type-specific sequencing in a subset of these samples confirmed the HPV type detected by PCR-MS. Quantitative PCR-MS results demonstrated that 11/75 (14.7%) samples contained as much HPV copies/cell as HC2-positive samples. These findings suggest that this prototype PCR-MS assay performs at least as well as HC2 for HPV detection, while offering the additional, unique advantages of type-specific identification and quantitation. Further validation work is underway to define clinically meaningful HPV detection thresholds and to evaluate the potential clinical application of future generations of the PCR-MS assay. PMID:19410602

Development and evaluation of a PCR and mass spectroscopy (PCR-MS)-based method for quantitative, type-specific detection of human papillomavirus.

Science.gov (United States)

Patel, Divya A; Shih, Yang-Jen; Newton, Duane W; Michael, Claire W; Oeth, Paul A; Kane, Michael D; Opipari, Anthony W; Ruffin, Mack T; Kalikin, Linda M; Kurnit, David M

2009-09-01

Knowledge of the central role of high-risk human papillomavirus (HPV) in cervical carcinogenesis, coupled with an emerging need to monitor the efficacy of newly introduced HPV vaccines, warrant development and evaluation of type-specific, quantitative HPV detection methods. In the present study, a prototype PCR and mass spectroscopy (PCR-MS)-based method to detect and quantitate 13 high-risk HPV types is compared to the Hybrid Capture 2 High-Risk HPV DNA test (HC2; Digene Corp., Gaithersburg, MD) in 199 cervical scraping samples and to DNA sequencing in 77 cervical tumor samples. High-risk HPV types were detected in 76/77 (98.7%) cervical tumor samples by PCR-MS. Degenerate and type-specific sequencing confirmed the types detected by PCR-MS. In 199 cervical scraping samples, all 13 HPV types were detected by PCR-MS. Eighteen (14.5%) of 124 cervical scraping samples that were positive for high-risk HPV by HC2 were negative by PCR-MS. In all these cases, degenerate DNA sequencing failed to detect any of the 13 high-risk HPV types. Nearly half (46.7%) of the 75 cervical scraping samples that were negative for high-risk HPV by the HC2 assay were positive by PCR-MS. Type-specific sequencing in a subset of these samples confirmed the HPV type detected by PCR-MS. Quantitative PCR-MS results demonstrated that 11/75 (14.7%) samples contained as much HPV copies/cell as HC2-positive samples. These findings suggest that this prototype PCR-MS assay performs at least as well as HC2 for HPV detection, while offering the additional, unique advantages of type-specific identification and quantitation. Further validation work is underway to define clinically meaningful HPV detection thresholds and to evaluate the potential clinical application of future generations of the PCR-MS assay.

Simple Method of Preparation and Characterization of New Antifungal Active Biginelli Type Heterocyclic Compounds

Science.gov (United States)

Velan, A. Senthilkumara; Joseph, J.; Raman, N.

2008-01-01

A simple, efficient and cost effective method is described for the synthesis of Biginelli type heterocyclic compounds of dihydropyrimidinones analogous. They were prepared from a reaction mixture consisting of substituted benzaldehydes, thiourea and ethylacetoacetate using ammonium dihydrogenphosphate as catalyst. The procedure for the preparation of the compounds is environmentally benign and safe which is advantageous in terms of experimentation, catalyst reusability, yields of the products, shorter reaction times and preclusion of toxic solvents. The four new synthesised compounds were tested for their antifungal activity. They have good antifungal activity comparing to the standard (Fluconazole). PMID:23997611

Blood group typing based on recording the elastic scattering of laser radiation using the method of digital imaging

Energy Technology Data Exchange (ETDEWEB)

Dolmashkin, A A; Dubrovskii, V A; Zabenkov, I V [V.I.Razumovsky Saratov State Medical University, Saratov (Russian Federation)

2012-05-31

The possibility is demonstrated to determine the human blood group by recording the scattering of laser radiation with the help of the digital imaging method. It is experimentally shown that the action of a standing ultrasound wave leads to acceleration of the agglutination reaction of red blood cells, to formation of larger immune complexes of red blood cells, and, as a consequence, to acceleration of their sedimentation. In the absence of agglutination of red blood cells the ultrasound does not enhance the relevant processes. This difference in the results of ultrasound action on the mixture of blood and serum allows a method of blood typing to be offered. Theoretical modelling of the technique of the practical blood typing, carried out on the basis of the elastic light scattering theory, agrees well with the experimental results, which made it possible to plan further improvement of the proposed method. The studies of specific features of sedimentation of red blood cells and their immune complexes were aimed at the optimisation of the sample preparation, i.e., at the search for such experimental conditions that provide the maximal resolution of the method and the device for registering the reaction of red blood cells agglutination. The results of the study may be used in designing the instrumentation for blood group assessment in humans.

Blood group typing based on recording the elastic scattering of laser radiation using the method of digital imaging

International Nuclear Information System (INIS)

Dolmashkin, A A; Dubrovskii, V A; Zabenkov, I V

2012-01-01

The possibility is demonstrated to determine the human blood group by recording the scattering of laser radiation with the help of the digital imaging method. It is experimentally shown that the action of a standing ultrasound wave leads to acceleration of the agglutination reaction of red blood cells, to formation of larger immune complexes of red blood cells, and, as a consequence, to acceleration of their sedimentation. In the absence of agglutination of red blood cells the ultrasound does not enhance the relevant processes. This difference in the results of ultrasound action on the mixture of blood and serum allows a method of blood typing to be offered. Theoretical modelling of the technique of the practical blood typing, carried out on the basis of the elastic light scattering theory, agrees well with the experimental results, which made it possible to plan further improvement of the proposed method. The studies of specific features of sedimentation of red blood cells and their immune complexes were aimed at the optimisation of the sample preparation, i.e., at the search for such experimental conditions that provide the maximal resolution of the method and the device for registering the reaction of red blood cells agglutination. The results of the study may be used in designing the instrumentation for blood group assessment in humans.

Interactions between Personality Type and the Experimental Methods

Science.gov (United States)

Emerson, Tisha L. N.; Taylor, Beck A.

2007-01-01

The authors bring together two research streams in the literature that examine separately the effectiveness of using experiments in the principles classroom and the relationship between different personality types and student achievement. Using a sample of 255 principles of microeconomics students, 48 of whom were enrolled in sections that relied…

Calculation of Hydrodynamic Characteristics of Weis-Fogh Type Water Turbine Using the Advanced Vortex Method

International Nuclear Information System (INIS)

Ro, Ki Deok

2014-01-01

In this study, the hydrodynamic characteristics of Weis-Fogh type water turbine were calculated by the advanced vortex method. The wing (NACA0010 airfoil) and both channel walls were approximated by source and vortex panels, and free vortices are introduced away from the body surfaces. The distance from the trailing edge of the wing to the wing axis, the width of the water channel and the maximum opening angle were selected as the calculation parameters, the important design factors. The maximum efficiency and the power coefficient for one wing of this water turbine were 26% and 0.4 at velocity ratio U/V = 2.0 respectively. The flow field of this water turbine is very complex because the wing moves unsteadily in the channel. However, using the advanced vortex method, it could be calculated accurately

Simulation of optical configurations and signal processing methods in Anger-type neutron-position scintillation detector

International Nuclear Information System (INIS)

Roche, C.T.; Strauss, M.G.; Brenner, R.

1984-01-01

The spatial linearity and resolution of Anger-type neutron-position scintillation detectors are studied using a semi-empirical model. Detector optics with either an air gap or optical grease between the scintillator and the dispersive light guide are considered. Three signal processing methods which truncate signals from PMT's distant from the scintillation are compared with the linear resistive weighting method. Air gap optics yields a 15% improvement in spatial resolution and 50% reduction in differential and integral nonlinearity relative to grease coupled optics, using linear processing. Using signal truncation instead of linear processing improves the resolution 15-20% for the air gap and 20-30% for the grease coupling case. Thus, the initial discrepancy in the resolution between the two optics nearly vanished, however the linearity of the grease coupled system is still significantly poorer

Calculation of Hydrodynamic Characteristics of Weis-Fogh Type Water Turbine Using the Advanced Vortex Method

Energy Technology Data Exchange (ETDEWEB)

Ro, Ki Deok [Gyeongsang Nat' l Univ., Jinju (Korea, Republic of)

2014-03-15

In this study, the hydrodynamic characteristics of Weis-Fogh type water turbine were calculated by the advanced vortex method. The wing (NACA0010 airfoil) and both channel walls were approximated by source and vortex panels, and free vortices are introduced away from the body surfaces. The distance from the trailing edge of the wing to the wing axis, the width of the water channel and the maximum opening angle were selected as the calculation parameters, the important design factors. The maximum efficiency and the power coefficient for one wing of this water turbine were 26% and 0.4 at velocity ratio U/V = 2.0 respectively. The flow field of this water turbine is very complex because the wing moves unsteadily in the channel. However, using the advanced vortex method, it could be calculated accurately.

Semiconducting p-type MgNiO:Li epitaxial films fabricated by cosputtering method

Energy Technology Data Exchange (ETDEWEB)

Kwon, Yong Hun; Chun, Sung Hyun; Cho, Hyung Koun [School of Advanced Materials Science and Engineering, Sungkyunkwan University, 300 Cheoncheon-dong, Jangan-gu, Suwon, Gyeonggi-do 440-746 (Korea, Republic of)

2013-07-15

Li-doped ternary Mg{sub x}Ni{sub 1-x}O thin films were deposited on (0001) Al{sub 2}O{sub 3} substrates by a radio frequency (RF) magnetron cosputtering method with MgO and NiO:Li targets. The Mg mole fraction and Li content were relatively controlled by changing RF power for the MgO target over a range of 0-300 W, while the NiO:Li target was kept at 150 W. As a result, all films were epitaxially grown on (0001) Al{sub 2}O{sub 3} substrates with the relationship of [110]{sub NiO}||[1110]{sub Al2O3}, [112]{sub NiO}||[2110]{sub Al2O3} (in-plane), and [111]{sub NiO}||[0001]{sub Al2O3} (out-of-plane), and showed p-type semiconducting properties. Furthermore, from x-ray diffraction patterns, the authors found that MgO was effectively mixed with NiO:Li without structural deformation due to low lattice mismatch (0.8%) between NiO and MgO. However, the excess Li contents degraded the crystallinity of the MgNiO films. The band-gap of films was continuously shifted from 3.66 eV (339 nm) to 4.15 eV (299 nm) by the RF power of the MgO target. A visible transmittance of more than 80% was exhibited at RF powers higher than 200 W. Ultimately, the electrical resistivity of p-type MgNiO films was improved from 7.5 to 673.5 {Omega}cm, indicating that the Li-doped MgNiO films are good candidates for transparent p-type semiconductors.

The effect of drying method temperature, collection method, and marker type on apparent ileal amino acid digestibility in 21-day-old broilers fed corn-soybean meal-barley based diet.

Science.gov (United States)

Olojede, O C; Ford, M J; Jacob, J P; Ao, T; Pescatore, A J; Adedokun, S A

2018-06-01

For accurate estimation of nutrient digestibility, an ideal drying and sampling method is required to preserve the quality of the digesta. A standard corn-soybean meal (corn-SBM) broiler starter diet was fed from d 0 to 10 before birds were placed on the experimental diets until d 21. One hundred and sixty-eight male Cobb 500 broiler chicks were used to evaluate the effect of two drying methods (freeze-dryer vs. forced air-oven) and two drying temperatures (40 vs. 55°C) (Exp 1), while ninety-six chicks were used to evaluate the effect of flushing and squeezing as well as marker types (titanium vs. chromium) on apparent ileal DM, N, Ca, P, and AA digestibility (Exp 2). There were seven (Exp 1) or eight (Exp 2) replicate cages per treatment with 6 birds/cage. Digesta from the distal two thirds of the ileum was obtained from birds following euthanasia on d 21 by squeezing (Exp 1) and squeezing or flushing (Exp 2). Samples collected were stored in the freezer at -20°C until they were either freeze-dried (FD) or oven-dried (OD) at 40 or 55°C. There were no interactions between the drying methods and drying temperatures (Exp 1) on apparent ileal DM, N, and AA digestibility. Met had the highest (92.3%) while Cys had the lowest (73.8%) digestibility value. In Exp 2, no interaction between sampling methods and marker types was observed. The effect of sampling methods was not significant except for Arg and Met where squeezing resulted in higher (P digestibility values. Furthermore, apparent ileal His, Ile, Cys, Ser, and Tyr digestibility tended to be higher (P digestibility. Likewise, marker type did not influence apparent ileal AA digestibility values.

A Type of Low-Latency Data Gathering Method with Multi-Sink for Sensor Networks

Science.gov (United States)

Sha, Chao; Qiu, Jian-mei; Li, Shu-yan; Qiang, Meng-ye; Wang, Ru-chuan

2016-01-01

To balance energy consumption and reduce latency on data transmission in Wireless Sensor Networks (WSNs), a type of low-latency data gathering method with multi-Sink (LDGM for short) is proposed in this paper. The network is divided into several virtual regions consisting of three or less data gathering units and the leader of each region is selected according to its residual energy as well as distance to all of the other nodes. Only the leaders in each region need to communicate with the mobile Sinks which have effectively reduced energy consumption and the end-to-end delay. Moreover, with the help of the sleep scheduling and the sensing radius adjustment strategies, redundancy in network coverage could also be effectively reduced. Simulation results show that LDGM is energy efficient in comparison with MST as well as MWST and its time efficiency on data collection is higher than one Sink based data gathering methods. PMID:27338401

A Type of Low-Latency Data Gathering Method with Multi-Sink for Sensor Networks

Directory of Open Access Journals (Sweden)

Chao Sha

2016-06-01

Full Text Available To balance energy consumption and reduce latency on data transmission in Wireless Sensor Networks (WSNs, a type of low-latency data gathering method with multi-Sink (LDGM for short is proposed in this paper. The network is divided into several virtual regions consisting of three or less data gathering units and the leader of each region is selected according to its residual energy as well as distance to all of the other nodes. Only the leaders in each region need to communicate with the mobile Sinks which have effectively reduced energy consumption and the end-to-end delay. Moreover, with the help of the sleep scheduling and the sensing radius adjustment strategies, redundancy in network coverage could also be effectively reduced. Simulation results show that LDGM is energy efficient in comparison with MST as well as MWST and its time efficiency on data collection is higher than one Sink based data gathering methods.

The Sort on Radioactive Waste Type model: A method to sort single-shell tanks into characteristic groups

International Nuclear Information System (INIS)

Hill, J.G.; Simpson, B.C.

1994-04-01

The Sort on Radioactive Waste Type (SORWT) model presents a method to categorize Hanford Site single-shell tanks (SSTs) into groups of tank expected to exhibit similar chemical and physical characteristics based on their major waste types and processing histories. This model has identified 29 different waste-type groups encompassing 135 of the 149 SSTs and 93% of the total waste volume in SSTs. The remaining 14 SSTs and associated wastes could not be grouped according to the established criteria and were placed in an ungrouped category. This letter report will detail the assumptions and methodologies used to develop the SORWT model and present the grouping results. In the near future, the validity of the predicted groups will be statistically tested using analysis of variance of characterization data obtained from recent (post-1989) core sampling and analysis activities. In addition, the SORWT model will be used to project the nominal waste characteristics of entire waste type groups that have some recent characterization data available. These subsequent activities will be documented along with these initial results in a comprehensive, formal PNL report cleared for public release by September 1994

Light and current induced degradation in p-type multi-crystalline cells and development of an inspection method and a stabilization method

Energy Technology Data Exchange (ETDEWEB)

Broek, K.M.; Bennett, I.J.; Jansen, M.J.; Borg, Van der N.J.C.M.; Eerenstein, W. [ECN Solar Energy, Petten (Netherlands)

2012-09-15

Stable solar cells are needed for durability testing of different combinations of module materials. In such a test, significant power losses in full-size modules with multi-crystalline cells after thermal cycling have been observed. This has been related to degradation of the solar cells used and it appeared that this was caused by current induced degradation. This phenomenon is not limited to boron doped Cz-Si, but can also occur in p-type multi-crystalline silicon. Work was done to develop an incoming inspection method for new batches of cells. Also, stabilisation procedures for modules containing cells that are sensitive to degradation have been determined.

Noninvasive method to estimate anaerobic threshold in individuals with type 2 diabetes

Directory of Open Access Journals (Sweden)

Sales Marcelo M

2011-01-01

Full Text Available Abstract Background While several studies have identified the anaerobic threshold (AT through the responses of blood lactate, ventilation and blood glucose others have suggested the response of the heart rate variability (HRV as a method to identify the AT in young healthy individuals. However, the validity of HRV in estimating the lactate threshold (LT and ventilatory threshold (VT for individuals with type 2 diabetes (T2D has not been investigated yet. Aim To analyze the possibility of identifying the heart rate variability threshold (HRVT by considering the responses of parasympathetic indicators during incremental exercise test in type 2 diabetics subjects (T2D and non diabetics individuals (ND. Methods Nine T2D (55.6 ± 5.7 years, 83.4 ± 26.6 kg, 30.9 ± 5.2 kg.m2(-1 and ten ND (50.8 ± 5.1 years, 76.2 ± 14.3 kg, 26.5 ± 3.8 kg.m2(-1 underwent to an incremental exercise test (IT on a cycle ergometer. Heart rate (HR, rate of perceived exertion (RPE, blood lactate and expired gas concentrations were measured at the end of each stage. HRVT was identified through the responses of root mean square successive difference between adjacent R-R intervals (RMSSD and standard deviation of instantaneous beat-to-beat R-R interval variability (SD1 by considering the last 60 s of each incremental stage, and were known as HRVT by RMSSD and SD1 (HRVT-RMSSD and HRVT-SD1, respectively. Results No differences were observed within groups for the exercise intensities corresponding to LT, VT, HRVT-RMSSD and HHVT-SD1. Furthermore, a strong relationship were verified among the studied parameters both for T2D (r = 0.68 to 0.87 and ND (r = 0.91 to 0.98 and the Bland & Altman technique confirmed the agreement among them. Conclusion The HRVT identification by the proposed autonomic indicators (SD1 and RMSSD were demonstrated to be valid to estimate the LT and VT for both T2D and ND.

Application of the characteristics method combined with advanced self-shielding models to an ACR-type cell

International Nuclear Information System (INIS)

Le Tellier, R.; Hebert, A.

2005-01-01

In this paper, we present the usage of the method of characteristics (MOC) with advanced self-shielding models for a fundamental lattice calculation on an ACR-type cell i.e. a cluster geometry with light water coolant and heavy water moderator. Comparison with the collision probability method (CP) show the consistency of the method of characteristics as implemented both in flux and self-shielding calculations. Acceleration techniques are tested in the different calculations and prove to be efficient. Comparisons with the Monte-Carlo code Tripoli4 show the advantage of a subgroup approach for self-shielding calculations : the difference in k eff is less than one standard deviation of the Tripoli4 calculation and in terms of total absorption rates, in the resolved resonances group, the maximum relative error is of the order of 3% localised in the most outer region of the central pin. (author)

Chemical-free n-type and p-type multilayer-graphene transistors

Energy Technology Data Exchange (ETDEWEB)

Dissanayake, D. M. N. M., E-mail: nandithad@voxtel-inc.com [Voxtel Inc, Lockey Laboratories, University of Oregon, Eugene Oregon 97402 (United States); Eisaman, M. D. [Sustainable Energy Technologies Department, Brookhaven National Laboratory, Upton, New York 11973 (United States); Department of Electrical and Computer Engineering, Stony Brook University, Stony Brook, New York 11794 (United States); Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794 (United States)

2016-08-01

A single-step doping method to fabricate n- and p-type multilayer graphene (MG) top-gate field effect transistors (GFETs) is demonstrated. The transistors are fabricated on soda-lime glass substrates, with the n-type doping of MG caused by the sodium in the substrate without the addition of external chemicals. Placing a hydrogen silsesquioxane (HSQ) barrier layer between the MG and the substrate blocks the n-doping, resulting in p-type doping of the MG above regions patterned with HSQ. The HSQ is deposited in a single fabrication step using electron beam lithography, allowing the patterning of arbitrary sub-micron spatial patterns of n- and p-type doping. When a MG channel is deposited partially on the barrier and partially on the glass substrate, a p-type and n-type doping profile is created, which is used for fabricating complementary transistors pairs. Unlike chemically doped GFETs in which the external dopants are typically introduced from the top, these substrate doped GFETs allow for a top gate which gives a stronger electrostatic coupling to the channel, reducing the operating gate bias. Overall, this method enables scalable fabrication of n- and p-type complementary top-gated GFETs with high spatial resolution for graphene microelectronic applications.

Charting improvements in US registry HLA typing ambiguity using a typing resolution score.

Science.gov (United States)

Paunić, Vanja; Gragert, Loren; Schneider, Joel; Müller, Carlheinz; Maiers, Martin

2016-07-01

Unrelated stem cell registries have been collecting HLA typing of volunteer bone marrow donors for over 25years. Donor selection for hematopoietic stem cell transplantation is based primarily on matching the alleles of donors and patients at five polymorphic HLA loci. As HLA typing technologies have continually advanced since the beginnings of stem cell transplantation, registries have accrued typings of varied HLA typing ambiguity. We present a new typing resolution score (TRS), based on the likelihood of self-match, that allows the systematic comparison of HLA typings across different methods, data sets and populations. We apply the TRS to chart improvement in HLA typing within the Be The Match Registry of the United States from the initiation of DNA-based HLA typing to the current state of high-resolution typing using next-generation sequencing technologies. In addition, we present a publicly available online tool for evaluation of any given HLA typing. This TRS objectively evaluates HLA typing methods and can help define standards for acceptable recruitment HLA typing. Copyright © 2016 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.

Method for the determination of natural ester-type gum bases used as food additives via direct analysis of their constituent wax esters using high-temperature GC/MS.

Science.gov (United States)

Tada, Atsuko; Ishizuki, Kyoko; Yamazaki, Takeshi; Sugimoto, Naoki; Akiyama, Hiroshi

2014-07-01

Natural ester-type gum bases, which are used worldwide as food additives, mainly consist of wax esters composed of long-chain fatty acids and long-chain fatty alcohols. There are many varieties of ester-type gum bases, and thus a useful method for their discrimination is needed in order to establish official specifications and manage their quality control. Herein is reported a rapid and simple method for the analysis of different ester-type gum bases used as food additives by high-temperature gas chromatography/mass spectrometry (GC/MS). With this method, the constituent wax esters in ester-type gum bases can be detected without hydrolysis and derivatization. The method was applied to the determination of 10 types of gum bases, including beeswax, carnauba wax, lanolin, and jojoba wax, and it was demonstrated that the gum bases derived from identical origins have specific and characteristic total ion chromatogram (TIC) patterns and ester compositions. Food additive gum bases were thus distinguished from one another based on their TIC patterns and then more clearly discriminated using simultaneous monitoring of the fragment ions corresponding to the fatty acid moieties of the individual molecular species of the wax esters. This direct high-temperature GC/MS method was shown to be very useful for the rapid and simple discrimination of varieties of ester-type gum bases used as food additives.

Method for the determination of natural ester-type gum bases used as food additives via direct analysis of their constituent wax esters using high-temperature GC/MS

Science.gov (United States)

Tada, Atsuko; Ishizuki, Kyoko; Yamazaki, Takeshi; Sugimoto, Naoki; Akiyama, Hiroshi

2014-01-01

Natural ester-type gum bases, which are used worldwide as food additives, mainly consist of wax esters composed of long-chain fatty acids and long-chain fatty alcohols. There are many varieties of ester-type gum bases, and thus a useful method for their discrimination is needed in order to establish official specifications and manage their quality control. Herein is reported a rapid and simple method for the analysis of different ester-type gum bases used as food additives by high-temperature gas chromatography/mass spectrometry (GC/MS). With this method, the constituent wax esters in ester-type gum bases can be detected without hydrolysis and derivatization. The method was applied to the determination of 10 types of gum bases, including beeswax, carnauba wax, lanolin, and jojoba wax, and it was demonstrated that the gum bases derived from identical origins have specific and characteristic total ion chromatogram (TIC) patterns and ester compositions. Food additive gum bases were thus distinguished from one another based on their TIC patterns and then more clearly discriminated using simultaneous monitoring of the fragment ions corresponding to the fatty acid moieties of the individual molecular species of the wax esters. This direct high-temperature GC/MS method was shown to be very useful for the rapid and simple discrimination of varieties of ester-type gum bases used as food additives. PMID:25473499

Influence Cooperative Learning Method and Personality Type to Ability to Write The Scientific Article (Experiment Study on SMAN 2 Students Ciamis Learning Indonesian Subject

Directory of Open Access Journals (Sweden)

Supriatna Supriatna

2017-10-01

Full Text Available The purpose of this research was to know the influence of cooperative learning method (Jigsaw and TPS and personality type (extrovert and introvert toward students’ ability in scientific writing at the SMA Negeri 2 Ciamis class XII. The research used experimental method with 2 x 2 factorial design. The population was the students of class XII which consisted of 150. The sample was 57 students. The results showed that: (1 The ability to write scientific articles of students learning by cooperative learning method jigsaw model (= 65,88 is higher than students who learn by cooperative technique method of TPS (= 59,88, (2 Ability writing scientific articles of students whose extroverted personality (= 65.69 is higher than introverted students (= 60.06; (3 there is interaction between cooperative learning method and personality type to score of writing ability of scientific article (4 ability to write scientific article of extrovert student and studying with technique of Jigsaw (= 77,75 higher than extrovert student learning with cooperative learning method model of TPS (= 53,63 to score of writing ability of scientific article, (5 ability to write introverted student's scientific article and get treatment of cooperative learning method of jigsaw model (= 54,00 lower than introverted student learning TPS technique = 66,13, (6 the ability to write extroverted students' scientific articles studied with jigsaw techniques, and introverted students who studied Jigsaw techniques (= 77.75 were higher than those with introverted personality types studied by the Jigsaw technique (= 54.00 , (7 Ability to write scientific articles of students learning by cooperative techniques of TPS technique and have extrovert personality type ( = 53.63 lower than introverted students learning TPS techniques (= 66.13.

Harnessing type I and type III CRISPR-Cas systems for genome editing

DEFF Research Database (Denmark)

Li, Yingjun; Pan, Saifu; Zhang, Yan

2016-01-01

CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated) systems are widespread in archaea and bacteria, and research on their molecular mechanisms has led to the development of genome-editing techniques based on a few Type II systems. However, there has not been any...... report on harnessing a Type I or Type III system for genome editing. Here, a method was developed to repurpose both CRISPR-Cas systems for genetic manipulation in Sulfolobus islandicus, a thermophilic archaeon. A novel type of genome-editing plasmid (pGE) was constructed, carrying an artificial mini-CRISPR...... and selectively retained as transformants. Using this strategy, different types of mutation were generated, including deletion, insertion and point mutations. We envision this method is readily applicable to different bacteria and archaea that carry an active CRISPR-Cas system of DNA interference provided...

No Hawking-Page phase transition in three dimensions

International Nuclear Information System (INIS)

Myung, Y.S.

2005-01-01

We investigate whether or not the Hawking-Page phase transition is possible to occur in three dimensions. Starting with the simplest class of Lanczos-Lovelock action, thermodynamic behavior of all AdS-type black holes without charge falls into two classes: Schwarzschild-AdS black holes in even dimensions and Chern-Simons black holes in odd dimensions. The former class can provide the Hawking-Page transition between Schwarzschild-AdS black holes and thermal AdS space. On the other hand, the latter class is exceptional and thus the Hawking-Page transition is hard to occur. In three dimensions, a second-order phase transition might occur between the non-rotating BTZ black hole and the massless BTZ black hole (thermal AdS space), instead of the first-order Hawking-Page transition between the non-rotating BTZ black hole and thermal AdS space

Effect of soil-foundation-structure interaction on the seismic response of wind turbines

Directory of Open Access Journals (Sweden)

Sam Austin

2017-09-01

Full Text Available Soil-foundation-structure interaction can affect the seismic response of wind turbines. This paper studies the effects of soil-foundation-structure interaction on the seismic response of 65 kW, 1 MW, and 2 MW horizontal-axis wind turbines with truncated cone steel towers. Four types of foundations with frequency-based design were analyzed, including spread foundation, mono pile, pile group with cap, and anchored spread foundation. Soil is modeled both implicitly (subgrade reaction modulus and explicitly. The finite element model developed using the ANSYS program was first validated using experimental data. Numerical models are then analyzed in both frequency and time domains using the Block Lanczos and generalized HHT-α formulations. Recommendations were given to simplify the soil-foundation-structure interaction analysis of wind turbines subjected to seismic loading.

Mitigation of inside surface residual stress of type 304 stainless steel pipe welds by inside water cooling method

International Nuclear Information System (INIS)

Sasaki, R.

1980-01-01

The weld residual stress distributions, macro- and microstructures of heat affected zone and IGSCC susceptibility of Type 304 stainless steel pipe welds by natural and inside water cooling methods have been investigated. The residual stresses of pipe welds by the natural cooling method are high tensile on both the inside and the outside surface. While the residual stresses on the inside surface of pipe welds by the inside water cooling method are compressive in both axial and circumferential directions for each pipe size from 2 to 24 inch diameter. The sensitized zones of welds by the inside water cooling method are closer to the fusion line, much narrower and milder than those by the natural cooling method. According to the constant extension rate test results for specimens taken from the inside surface of pipe welds, the inside water cooled welds are more resistant to IGSCC than naturally cooled ones

Method for the typing of Clostridium difficile based on polyacrylamide gel electrophoresis of (/sup 35/S)methionine-labeled proteins

Energy Technology Data Exchange (ETDEWEB)

Tabaqchali, S.; O' Farrell, S.; Holland, D.; Silman, R.

1986-01-01

A typing method for Clostridium difficile based on the incorporation of (/sup 35/S)methionine into cellular proteins, their separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and their visualization by autoradiography is described. On analysis of the radiolabeled-protein profiles, nine distinct groups were observed (A to E and W to Z). The method, which is simple, reproducible, and readily expandable, has been applied in epidemiological studies to demonstrate cross-infection and hospital acquisition of C. difficile.

Synthesis of Magnetic Rattle-Type Silica with Controllable Magnetite and Tunable Size by Pre-Shell-Post-Core Method.

Science.gov (United States)

Chen, Xue; Tan, Longfei; Meng, Xianwei

2016-03-01

In this study, we have developed the pre-shell-post-core route to synthesize the magnetic rattle-type silica. This method has not only simplified the precursor's process and reduced the reacting time, but also ameliorated the loss of magnetite and made the magnetite content and the inner core size controllable and tunable. The magnetite contents and inner core size can be easily controlled by changing the type and concentration of alkali, reaction system and addition of water. The results show that alkali aqueous solution promotes the escape of the precursor iron ions from the inner space of rattle-type silica and results in the loss of magnetite. In this case, NaOH ethanol solution is better for the formation of magnetite than ammonia because it not only offers an appropriate alkalinity to facilitate the synthesis of. magnetic particles, but also avoids the escape of the iron ions from the mesopores of rattle-type silica. The synthesis process is very simple and efficient, and it takes no more than 2 hours to complete the total preparation and handling of the magnetic rattle-type silica. The end-product Fe3O4@SiO2 nanocomposites also have good magnetic properties which will perform potential application in biomedical science.

A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data

Directory of Open Access Journals (Sweden)

Catherine Dianna Carrillo

2012-05-01

Full Text Available Tracking of sources of sporadic cases of campylobacteriosis remains challenging, as commonly used molecular typing methods have limited ability to unambiguously link genetically related strains. Genomics has become increasingly prominent in the public health response to enteric pathogens as methods enable characterization of pathogens at an unprecedented level of resolution. However, the cost of sequencing and expertise required for bioinformatic analyses remains prohibitive, and these comprehensive analyses are limited to a few priority strains. Although several molecular typing methods are currently widely used for epidemiological analysis of campylobacters, it is not clear how accurately these methods reflect true strain relationships. To address this, we analyzed 104 publically available whole genome sequences (WGS of C. jejuni and C. coli. In addition to in silico determination of multi-locus sequence (MLST, fla and porA type, as well as comparative genomic fingerprint (CGF, we inferred a reference phylogeny based on conserved core genome elements. Molecular typing data were compared to the reference phylogeny for concordance using the Adjusted Wallace Coefficient (AWC with confidence intervals. Although MLST targets the sequence variability in core genes and CGF targets insertions/deletions of accessory genes, both methods are based on multilocus analysis and provided better estimates of true phylogeny than methods based on single loci (porA, fla. A more comprehensive WGS dataset including additional genetically related strains, both epidemiologically linked and unlinked, will be necessary to assess performance of methods for outbreak investigations and surveillance activities. Analyses of the strengths and weaknesses of widely used typing methodologies in inferring true strain relationships will provide guidance in the interpretation of this data for epidemiological purposes.

Post-disposal safety assessment of toxic and radioactive waste: waste types, disposal practices, disposal criteria, assessment methods and post-disposal impacts

International Nuclear Information System (INIS)

Torres, C.; Simon, I.; Little, R.H.; Charles, D.; Grogan, H.A.; Smith, G.M.; Sumerling, T.J.; Watkins, B.M.

1993-01-01

The need for safety assessments of waste disposal stems not only from the implementation of regulations requiring the assessment of environmental effects, but also from the more general need to justify decisions on protection requirements. As waste-disposal methods have become more technologically based, through the application of more highly engineered design concepts and through more rigorous and specific limitations on the types and quantities of the waste disposed, it follows that assessment procedures also must become more sophisticated. It is the overall aim of this study to improve the predictive modelling capacity for post-disposal safety assessments of land-based disposal facilities through the development and testing of a comprehensive, yet practicable, assessment framework. This report records all the work which has been undertaken during Phase 1 of the study. Waste types, disposal practices, disposal criteria and assessment methods for both toxic and radioactive waste are reviewed with the purpose of identifying those features relevant to assessment methodology development. Difference and similarities in waste types, disposal practices, criteria and assessment methods between countries, and between toxic and radioactive wastes are highlighted and discussed. Finally, an approach to identify post-disposal impacts, how they arise and their effects on humans and the environment is described

Method of fabricating zirconium metal for use in composite type fuel cans

International Nuclear Information System (INIS)

Imahashi, Hiromichi; Inagaki, Masatoshi; Akabori, Kimihiko; Tada, Naofumi; Yasuda, Tetsuro.

1985-01-01

Purpose: To mass produce zirconium metal for fuel cans with less radiation hardening. Method: Zirconium sponges as raw material are inserted in a hearth mold and a procedure of melting the zirconium sponges portionwise by using a melting furnace having electron beams as a heat source while moving the hearth is repeated at least for once. Then, the rod-like ingot after melting is melted again in a vacuum or inert gas atmosphere into an ingot of a low oxygen density capable of fabrication. A composite fuel can billet is formed by using the thus obtained zirconium ingot and a zircalloy, and a predetermined composite type fuel can is manufactured by way of hot extrusion and pipe drawing fabrication. The raw material usable herein is zirconium sponge with an oxygen density of 400 ppm or higher and the content of impurity other than oxygen is between 1000 - 5000 ppm in total, or the molten material thereof. (Kamimura, M.)

Mechanical strength calculation of the disk type windings with elastic couplings by the finite element method

International Nuclear Information System (INIS)

Sivkova, G.N.; Spirchenko, Yu.V.; Chvartatskij, P.V.

1981-01-01

Stressed-deformed state of toroidal field coils of the disc type with elastic couplings of the tokamaks has been investigated with provision for the effect of the central core pliability by means of the two-dimensional version of the finite element method. Numerical solution of the finite element method is performed by means of the ES 1040 computer according to the computer code permitting taking account of boundary conditions of elastic support. The calculation has been performed using as the example the project of T-20 facility coil of the disc type. Consideration of pliability of the central core of the facility inductor is accomplished by the introduction of additional rigidities to the complete matrix of rigidity. Scheme of the structure distretization includes 141 units, 211 elements. The accuracy of solution depends on the reduction accuracy of the volume load to unit forces and on the number of finite elements. Analysis of the solution convergence is performed by the comparison of solutions obtained for three different schemes of the disk discretization without regard for the inductor pliability. The comparative analysis of the results shows that transfer epures for all the three discretization versions practically coincide and stresses differ not more than by 10%. On the whole the above investigation has demonstrated good convergence of the problem solution [ru

A quick seismic assessment method for jacket type offshore structures by combining push-over and nonlinear time history analyses

Energy Technology Data Exchange (ETDEWEB)

Karimiyan, S.; Hosseini, M. [International Inst. of Earthquake Engineering and Seismology, Tehran (Iran, Islamic Republic of); Karimiyan, M. [Islamic Azad Univ., Tehran (Iran, Islamic Republic of). Earthquake Eng. Dept., School of Engineering

2010-07-01

Several offshore structures are located in seismic regions. In order to upgrade their seismic behaviour, their seismic vulnerability must be evaluated. It is thought that the most reliable type of analysis for seismic evaluation is nonlinear time history analysis (NLTHA), however, it is known to be a very time consuming method. This paper presented a quick procedure by combining the push over analysis (POA) and the NLTHA. The paper discussed both methods in detail. In order to identify the more critical members of the structure, based on the range of their plastic deformations, some POA were first performed. The NLTHA was then performed, focusing on the critical members, to obtain their vulnerability with higher reliability. An offshore structure of jacket type, installed in the Lavan oil field in the Persian Gulf in 1970, was also considered in order to demonstrate the efficiency of the proposed method. It was concluded from the numerical results that combining POA and NLTHA was a quick and reliable seismic evaluation method. The results demonstrated that although the vulnerability of the jacket structure was not very high, the level of damage was not the same for different members, and was dependent on their location in the structure and also its geometric orientation and load bearing situation. 6 refs., 1 tab., 8 figs.

Comparison of methods for urinary albumin determination in patients with type 1 diabetes

Directory of Open Access Journals (Sweden)

C. Khawali

2002-03-01

Full Text Available We tested the correlation of the albumin-to-creatinine ratio (A/C in an early-morning urine sample, measured with a commercial kit (DCA 2000®, with the conventional immunoturbidimetric determination in the laboratory and with overnight albumin excretion rate (reference method. Fifty-five type 1 diabetic adolescents had their first-morning urine collected on the 1st and 8th day of the period. Urinary albumin and creatinine were determined immediately using the DCA 2000® kit. Samples were also stored for laboratory analysis. To evaluate the correlation between early-morning urinary A/C ratio and overnight albumin excretion rate, 16 subjects had a timed overnight urine collection. A/C ratios determined with the DCA 2000® kit and by the laboratory method were 13.1 ± 20.5 and 20.4 ± 46.3 mg/g, respectively. A/C results by both methods proved to be strongly correlated (r = 0.98, P<0.001. DCA 2000®-determined A/C showed 50% sensitivity and 100% specificity when compared to the reference method. Spot urinary A/C of the subset of 16 subjects significantly correlated with their overnight albumin excretion rate (r = 0.98, P<0.001. Intraindividual variation ranged from 17 to 32% and from 9 to 63% for A/C and overnight albumin excretion rate, respectively. In conclusion, an early-morning specimen should be used instead of timed overnight urine and the A/C ratio is an accurate, reliable and easily determined parameter for the screening of diabetic nephropathy. Immediate measurement of the A/C ratio is feasible using the DCA 2000® kit. Intraindividual variability indicates the need for repeated determinations to confirm microalbuminuria and the diagnosis of incipient diabetic nephropathy.

Extending Dylan's type system for better type inference and error detection

DEFF Research Database (Denmark)

Mehnert, Hannes

2010-01-01

a dynamically typed language. Dylan poses several special challenges for gradual typing, such as multiple return values, variable-arity methods and generic functions (multiple dispatch). In this paper Dylan is extended with function types and parametric polymorphism. We implemented the type system...... and aunification-based type inference algorithm in the mainstream Dylan compiler. As case study we use the Dylan standard library (roughly 32000 lines of code), which witnesses that the implementation generates faster code with fewer errors. Some previously undiscovered errors in the Dylan library were revealed....

Salmonella spp. contamination in commercial layer hen farms using different types of samples and detection methods.

Science.gov (United States)

Soria, M C; Soria, M A; Bueno, D J; Godano, E I; Gómez, S C; ViaButron, I A; Padin, V M; Rogé, A D

2017-08-01

The performance of detection methods (culture methods and polymerase chain reaction assay) and plating media used in the same type of samples were determined as well as the specificity of PCR primers to detected Salmonella spp. contamination in layer hen farms. Also, the association of farm characteristics with Salmonella presence was evaluated. Environmental samples (feces, feed, drinking water, air, boot-swabs) and eggs were taken from 40 layer hen houses. Salmonella spp. was most detected in boot-swabs taken around the houses (30% and 35% by isolation and PCR, respectively) follow by fecal samples (15.2% and 13.6% by isolation and PCR, respectively). Eggs, drinking water, and air samples were negative for Salmonella detection. Salmonella Schwarzengrund and S. Enteritidis were the most isolated serotypes. For plating media, relative specificity was 1, and the relative sensitivity was greater for EF-18 agar than XLDT agar in feed and fecal samples. However, relative sensitivity was greater in XLDT agar than EF-18 agar for boot-swab samples. Agreement was between fair to good depending on the sample, and it was good between isolation and PCR (feces and boot-swabs), without agreement for feed samples. Salmonella spp. PCR was positive for all strains, while S. Typhimurium PCR was negative. Salmonella Enteritidis PCR used was not specific. Based in the multiple logistic regression analyses, categorization by counties was significant for Salmonella spp. presence (P-value = 0.010). This study shows the importance of considering different types of samples, plating media and detection methods during a Salmonella spp. monitoring study. In addition, it is important to incorporate the sampling of floors around the layer hen houses to learn if biosecurity measures should be strengthened to minimize the entry and spread of Salmonella in the houses. Also, the performance of some PCR methods and S. Enteritidis PCR should be improved, and biosecurity measures in hen farms must be

Ab Initio Potential Energy Surfaces for Both the Ground (X̃1A′ and Excited (A∼1A′′ Electronic States of HSiBr and the Absorption and Emission Spectra of HSiBr/DSiBr

Directory of Open Access Journals (Sweden)

Anyang Li

2012-01-01

Full Text Available Ab initio potential energy surfaces for the ground (X̃1A′ and excited (A˜A′′1 electronic states of HSiBr were obtained by using the single and double excitation coupled-cluster theory with a noniterative perturbation treatment of triple excitations and the multireference configuration interaction with Davidson correction, respectively, employing an augmented correlation-consistent polarized valence quadruple zeta basis set. The calculated vibrational energy levels of HSiBr and DSiBr of the ground and excited electronic states are in excellent agreement with the available experimental band origins. In addition, the absorption and emission spectra of HSiBr and DSiBr were calculated using an efficient single Lanczos propagation method and are in good agreement with the available experimental observations.

Method of injecting cooling water in emergency core cooling system (ECCS) of PWR type reactor

International Nuclear Information System (INIS)

Sobajima, Makoto; Adachi, Michihiro; Tasaka, Kanji; Suzuki, Mitsuhiro.

1979-01-01

Purpose: To provide a cooling water injection method in an ECCS, which can perform effective cooling of the reactor core. Method: In a method of injecting cooling water in an ECCS as a countermeasure against a rupture accident of a pwr type reactor, cooling water in the first pressure storage injection system is injected into the upper plenum of the reactor pressure vessel at a set pressure of from 50 to 90 atg. and a set temperature of from 80 to 200 0 C, cooling water in the second pressure storage injection system is injected into the lower plenum of the reactor pressure vessel at a pressure of from 25 to 60 atg. which is lower than the set pressure and a temperature less than 60 0 C, and further in combination with these procedures, cooling water of less than 60 0 C is injected into a high-temperature side piping, in the high-pressure injection system of upstroke of 100 atg. by means of a pump and the low-pressure injection system of upstroke of 20 atg. also by means of a pump, thereby cooling the reactor core. (Aizawa, K.)

Cooking Methods for Red Meats and Risk of Type 2 Diabetes: A Prospective Study of U.S. Women.

Science.gov (United States)

Liu, Gang; Zong, Geng; Hu, Frank B; Willett, Walter C; Eisenberg, David M; Sun, Qi

2017-08-01

This study examined different cooking methods for red meats in relation to type 2 diabetes (T2D) risk among U.S. women who consumed red meats regularly (≥2 servings/week). We monitored 59,033 women (1986-2012) aged 30-55 years and free of diabetes, cardiovascular disease, and cancer at baseline when information on frequency of different cooking methods for red meats, including broiling, barbequing, roasting, pan-frying, and stewing/boiling, was collected. During 1.24 million person-years of follow-up, we documented 6,206 incident cases of T2D. After multivariate adjustment including red meat cooking methods, total red meat and processed red meat intake were both associated with a monotonically increased T2D risk (both P trend cooking methods were further mutually adjusted. Independent of total red meat consumption, high-temperature and/or open-flame cooking methods for red meats, especially broiling and barbequing, may further increase diabetes risk among regular meat eaters. © 2017 by the American Diabetes Association.

Evaluation of 99Tcm-DTPA glomerular filtration rate by the Gates method in patients with type 2 diabetes

International Nuclear Information System (INIS)

Yuan Jie; Zhang Guangming; Liu Congjin; Wang Yuankai; Zhu Huiqing; Kuai Dayu; Wu Xia; Hu Renming; Liu Xingdang

2013-01-01

Objective: To study the changes of GFR measured in different time intervals after the injection of 99 Tc m -DTPA and to evaluate the clinical value of GFR in patients with type 2 diabetes. Methods: Eleven healthy volunteers (6 males, 5 females; mean age (61.45±7.90) years, age range: 47-79 years) and 56 patients with type 2 diabetes (31 males, 25 females; mean age (60.98±6.96) years, age range: 45-75 years) were recruited. 99 Tc m -DTPA was used to measure GFR for all subjects. ROI was drawn at 2 and 3 min post-injection and GFR was calculated by Gates method. Two-sample t test and Pearson correlation analysis were performed with SPSS 15.0. Results: SCr ((84.90±14.38) μmol/L) was significantly correlated with GFR in patients with type 2 diabetes. There was negative correlation between SCr and GFR for both, left and right kidneys at 3 min post-injection (r=-0.652, -0.636, -0.470, all P≤0.001) and at 2 min post-injection (r=-0.599, -0.553, -0.529, all P<0.001). Total GFR, GFR for left kidney and GFR for right kidney at 3 min post-injection in diabetes group ((69.77 ± 11.00),(33.12 ± 5.74), (37.34 ± 9.81) ml/min) were lower than those in control group ((97.89±5.98), (46.60±4.91), (51.28±4.20) ml/min; t=-8.212, -7.233, -4.069, all P<0.001). Conclusions: To calculate the GFR of the patients with type 2 diabetes, 3 min post-injection is the optimal time. Measurement of GFR by 99 Tc m -DTPA is useful in early diagnosis of diabetic nephropathy. (authors)

Application of unweighted pair group methods with arithmetic average (UPGMA) for identification of kinship types and spreading of ebola virus through establishment of phylogenetic tree

Science.gov (United States)

Andriani, Tri; Irawan, Mohammad Isa

2017-08-01

Ebola Virus Disease (EVD) is a disease caused by a virus of the genus Ebolavirus (EBOV), family Filoviridae. Ebola virus is classifed into five types, namely Zaire ebolavirus (ZEBOV), Sudan ebolavirus (SEBOV), Bundibugyo ebolavirus (BEBOV), Tai Forest ebolavirus also known as Cote d'Ivoire ebolavirus (CIEBOV), and Reston ebolavirus (REBOV). Identification of kinship types of Ebola virus can be performed using phylogenetic trees. In this study, the phylogenetic tree constructed by UPGMA method in which there are Multiple Alignment using Progressive Method. The results concluded that the phylogenetic tree formation kinship ebola virus types that kind of Tai Forest ebolavirus close to Bundibugyo ebolavirus but the layout state ebola epidemic spread far apart. The genetic distance for this type of Bundibugyo ebolavirus with Tai Forest ebolavirus is 0.3725. Type Tai Forest ebolavirus similar to Bundibugyo ebolavirus not inuenced by the proximity of the area ebola epidemic spread.

Relativistic effect of pseudospin symmetry and tensor coupling on the Mie-type potential via Laplace transformation method

International Nuclear Information System (INIS)

Eshghi, M.; Ikhdair, S. M.

2014-01-01

A relativistic Mie-type potential for spin-1/2 particles is studied. The Dirac Hamiltonian contains a scalar S(r) and a vector V(r) Mie-type potential in the radial coordinates, as well as a tensor potential U(r) in the form of Coulomb potential. In the pseudospin (p-spin) symmetry setting Σ = C ps and Δ = V(r), an analytical solution for exact bound states of the corresponding Dirac equation is found. The eigenenergies and normalized wave functions are presented and particular cases are discussed with any arbitrary spin—orbit coupling number κ. Special attention is devoted to the case Σ = 0 for which p-spin symmetry is exact. The Laplace transform approach (LTA) is used in our calculations. Some numerical results are obtained and compared with those of other methods. (general)

Comparison of double-locus sequence typing (DLST) and multilocus sequence typing (MLST) for the investigation of Pseudomonas aeruginosa populations.

Science.gov (United States)

Cholley, Pascal; Stojanov, Milos; Hocquet, Didier; Thouverez, Michelle; Bertrand, Xavier; Blanc, Dominique S

2015-08-01

Reliable molecular typing methods are necessary to investigate the epidemiology of bacterial pathogens. Reference methods such as multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE) are costly and time consuming. Here, we compared our newly developed double-locus sequence typing (DLST) method for Pseudomonas aeruginosa to MLST and PFGE on a collection of 281 isolates. DLST was as discriminatory as MLST and was able to recognize "high-risk" epidemic clones. Both methods were highly congruent. Not surprisingly, a higher discriminatory power was observed with PFGE. In conclusion, being a simple method (single-strand sequencing of only 2 loci), DLST is valuable as a first-line typing tool for epidemiological investigations of P. aeruginosa. Coupled to a more discriminant method like PFGE or whole genome sequencing, it might represent an efficient typing strategy to investigate or prevent outbreaks. Copyright © 2015 Elsevier Inc. All rights reserved.

Impact of advanced and basic carbohydrate counting methods on metabolic control in patients with type 1 diabetes.

Science.gov (United States)

Souto, Débora Lopes; Zajdenverg, Lenita; Rodacki, Melanie; Rosado, Eliane Lopes

2014-03-01

Diets based on carbohydrate counting remain a key strategy for improving glycemic control in patients with type 1 diabetes. However, these diets may promote weight gain because of the flexibility in food choices. The aim of this study was to compare carbohydrate counting methods regarding anthropometric, biochemical, and dietary variables in individuals with type 1 diabetes, as well as to evaluate their knowledge about nutrition. Participants were allocated in basic or advanced groups. After 3 mo of the nutritional counseling, dietary intake, anthropometric variables, lipemia, and glycemic control were compared between groups. A questionnaire regarding carbohydrate counting, sucrose intake, nutritional knowledge, and diabetes and nutrition taboos also was administered. Ten (30%) participants had already used advanced carbohydrate counting before the nutritional counseling and these individuals had a higher body mass index (BMI) (P 1) and waist circumference (WC) (P = 0.01) than others (n = 23; 69.7%). After 3 mo of follow-up, although participants in the advanced group (n = 17; 51.52%) presented higher BMI (P 1) and WC (P = 0.03), those in the basic group (n = 16; 48.48%) showed a higher fat intake (P 1). The majority of participants reported no difficulty in following carbohydrate counting (62.5% and 88% for basic and advanced groups, respectively) and a greater flexibility in terms of food choices (>90% with both methods). Advanced carbohydrate counting did not affect lipemic and glycemic control in individuals with type 1 diabetes, however, it may increase food intake, and consequently the BMI and WC, when compared to basic carbohydrate counting. Furthermore, carbohydrate counting promoted greater food flexibility. Copyright © 2014 Elsevier Inc. All rights reserved.