Evaluation of nitrate quantification techniques for in-line analysis in drinking water

International Nuclear Information System (INIS)

Hernandez Alpizar, Laura; Coy Herrera, Ricardo

2015-01-01

The results of a study are presented to determine the potential use of four techniques for the quantification of nitrates in continuous sampling: ion chromatography, ultraviolet absorption spectrophotometry; one table equipment and two mini-spectrophotometers with continuous flow sample injection are used, one for measurements in the field of visible radiation and the other optimized for measurements of ultraviolet radiation absorption. Variables that are considered: reagent and accessory consumption, waste toxicity, analyte response, detection limit (LD), quantification limit (LC), linearity in the field of interest and sensitivity. Ultraviolet absorption detection spectro photometry with continuous flow sample injection is the best of the techniques for line analysis. The response has been between 0-10 mg / L linear, data recommended by WHO for the concentration of nitrates in drinking water. Low consumption of reagents and accessories is shown. This spectrophotometry without hazardous waste generated, has had LD 0.002 mg / L and LC 0.006 mg / L and an adequate sensitivity to respond rapidly to the concentration of the analyte without signal saturation. The desirable characteristics are fulfilled for an on-line analysis system. (author) [es

Remote quantification of phycocyanin in potable water sources through an adaptive model

Science.gov (United States)

Song, Kaishan; Li, Lin; Tedesco, Lenore P.; Li, Shuai; Hall, Bob E.; Du, Jia

2014-09-01

Cyanobacterial blooms in water supply sources in both central Indiana USA (CIN) and South Australia (SA) are a cause of great concerns for toxin production and water quality deterioration. Remote sensing provides an effective approach for quick assessment of cyanobacteria through quantification of phycocyanin (PC) concentration. In total, 363 samples spanning a large variation of optically active constituents (OACs) in CIN and SA waters were collected during 24 field surveys. Concurrently, remote sensing reflectance spectra (Rrs) were measured. A partial least squares-artificial neural network (PLS-ANN) model, artificial neural network (ANN) and three-band model (TBM) were developed or tuned by relating the Rrs with PC concentration. Our results indicate that the PLS-ANN model outperformed the ANN and TBM with both the original spectra and simulated ESA/Sentinel-3/Ocean and Land Color Instrument (OLCI) and EO-1/Hyperion spectra. The PLS-ANN model resulted in a high coefficient of determination (R2) for CIN dataset (R2 = 0.92, R: 0.3-220.7 μg/L) and SA (R2 = 0.98, R: 0.2-13.2 μg/L). In comparison, the TBM model yielded an R2 = 0.77 and 0.94 for the CIN and SA datasets, respectively; while the ANN obtained an intermediate modeling accuracy (CIN: R2 = 0.86; SA: R2 = 0.95). Applying the simulated OLCI and Hyperion aggregated datasets, the PLS-ANN model still achieved good performance (OLCI: R2 = 0.84; Hyperion: R2 = 0.90); the TBM also presented acceptable performance for PC estimations (OLCI: R2 = 0.65, Hyperion: R2 = 0.70). Based on the results, the PLS-ANN is an effective modeling approach for the quantification of PC in productive water supplies based on its effectiveness in solving the non-linearity of PC with other OACs. Furthermore, our investigation indicates that the ratio of inorganic suspended matter (ISM) to PC concentration has close relationship to modeling relative errors (CIN: R2 = 0.81; SA: R2 = 0.92), indicating that ISM concentration exert

An Optimized Method for Quantification of Pathogenic Leptospira in Environmental Water Samples.

Science.gov (United States)

Riediger, Irina N; Hoffmaster, Alex R; Casanovas-Massana, Arnau; Biondo, Alexander W; Ko, Albert I; Stoddard, Robyn A

2016-01-01

Leptospirosis is a zoonotic disease usually acquired by contact with water contaminated with urine of infected animals. However, few molecular methods have been used to monitor or quantify pathogenic Leptospira in environmental water samples. Here we optimized a DNA extraction method for the quantification of leptospires using a previously described Taqman-based qPCR method targeting lipL32, a gene unique to and highly conserved in pathogenic Leptospira. QIAamp DNA mini, MO BIO PowerWater DNA and PowerSoil DNA Isolation kits were evaluated to extract DNA from sewage, pond, river and ultrapure water samples spiked with leptospires. Performance of each kit varied with sample type. Sample processing methods were further evaluated and optimized using the PowerSoil DNA kit due to its performance on turbid water samples and reproducibility. Centrifugation speeds, water volumes and use of Escherichia coli as a carrier were compared to improve DNA recovery. All matrices showed a strong linearity in a range of concentrations from 106 to 10° leptospires/mL and lower limits of detection ranging from Leptospira in environmental waters (river, pond and sewage) which consists of the concentration of 40 mL samples by centrifugation at 15,000×g for 20 minutes at 4°C, followed by DNA extraction with the PowerSoil DNA Isolation kit. Although the method described herein needs to be validated in environmental studies, it potentially provides the opportunity for effective, timely and sensitive assessment of environmental leptospiral burden.

Radon 222 and Tritium in the identification and quantification of NAPL contamination in ground water. 1. Theoretical principles

International Nuclear Information System (INIS)

Molerio Leon, LF; Fernandez Gomez, IM; Carrazana Gonzalez, J A

2012-01-01

This is the first of two papers presenting the basic concepts and the main results of the application of environmental Rn 222a nd Tritium in the identification and quantification of Non-Aqueous Phase Liquids contamination of Cuban ground waters and their relation with sea water intrusion and/or spills of produced waters. The interpretation technique is based on the partition properties of the tracers involved and in the geochemical affinity of some major and minor constituents of the ground waters occurring beneath the exploration and production facilities of the Northern Havana-Matanzas Heavy Oil Belt. The second paper in this series discusses several cases of interaction among the fresh water aquifer, the sea, the sea water-fresh water interface and oil contamination

Experimental design for TBT quantification by isotope dilution SPE-GC-ICP-MS under the European water framework directive.

Science.gov (United States)

Alasonati, Enrica; Fabbri, Barbara; Fettig, Ina; Yardin, Catherine; Del Castillo Busto, Maria Estela; Richter, Janine; Philipp, Rosemarie; Fisicaro, Paola

2015-03-01

In Europe the maximum allowable concentration for tributyltin (TBT) compounds in surface water has been regulated by the water framework directive (WFD) and daughter directive that impose a limit of 0.2 ng L(-1) in whole water (as tributyltin cation). Despite the large number of different methodologies for the quantification of organotin species developed in the last two decades, standardised analytical methods at required concentration level do not exist. TBT quantification at picogram level requires efficient and accurate sample preparation and preconcentration, and maximum care to avoid blank contamination. To meet the WFD requirement, a method for the quantification of TBT in mineral water at environmental quality standard (EQS) level, based on solid phase extraction (SPE), was developed and optimised. The quantification was done using species-specific isotope dilution (SSID) followed by gas chromatography (GC) coupled to inductively coupled plasma mass spectrometry (ICP-MS). The analytical process was optimised using a design of experiment (DOE) based on a factorial fractionary plan. The DOE allowed to evaluate 3 qualitative factors (type of stationary phase and eluent, phase mass and eluent volume, pH and analyte ethylation procedure) for a total of 13 levels studied, and a sample volume in the range of 250-1000 mL. Four different models fitting the results were defined and evaluated with statistic tools: one of them was selected and optimised to find the best procedural conditions. C18 phase was found to be the best stationary phase for SPE experiments. The 4 solvents tested with C18, the pH and ethylation conditions, the mass of the phases, the volume of the eluents and the sample volume can all be optimal, but depending on their respective combination. For that reason, the equation of the model conceived in this work is a useful decisional tool for the planning of experiments, because it can be applied to predict the TBT mass fraction recovery when the

Metal quantification in water and sediment samples of billings reservoir by SR-TXRF

International Nuclear Information System (INIS)

Sampaio, Sergio Arnaud; Moreira, Silvana; Vives, Ana Elisa Sirito de

2007-01-01

Billings is the largest reservoir water of the metropolitan Sao Paulo area, with approximately 100km 2 of water. Its basin hydrographic occupies more than 500km 2 in six cities. It concentrates the largest industrial park of South America and only its margins are busy for almost a million inhabitants. The quality of its waters is, therefore, constant of concern of the whole society. In this work the Synchrotron Radiation Total Reflection X Ray Fluorescence (SR-TXRF) is applied for the identification and quantification of metals in waters and sediments of the Billings dam. A comparison of the levels of metals found with the maximum permissive limits established by the Brazilian legislation was made. The purpose of social context is to contribute for the preservation of the local springs and the rational use of its waters. For the field work they were chosen 19 collection points, included the margins and the central portion of the dam, in agreement with similar approaches the those adopted by the Company of Technology of Environmental Sanitation of Sao Paulo State (CETESB).The water and sediment samples, as well as the certified and standard samples, were analyzed at Brazilian Synchrotron Light Laboratory (LNLS), Campinas, SP, Brazil. Results indicate that the water and the sediments of the reservoir have concentrations above the legal limits. (author)

Metal quantification in water and sediment samples of billings reservoir by SR-TXRF

Energy Technology Data Exchange (ETDEWEB)

Sampaio, Sergio Arnaud; Moreira, Silvana [Universidade Estadual de Campinas (UNICAMP), Campinas, SP (Brazil). Faculdade de Engenharia Civil, Arquitetura e Urbanismo]. E-mails: silvana@fec.unicamp.br; sergioarnaud@hotmail.com; Vives, Ana Elisa Sirito de [Universidade Metodista de Piracicaba (UNIMEP), Santa Barbara D' Oeste, SP (Brazil). Faculdade de Engenharia Civil, Arquitetura e Urbanismo]. E-mail: aesvives@unimep.br

2007-07-01

Billings is the largest reservoir water of the metropolitan Sao Paulo area, with approximately 100km{sup 2} of water. Its basin hydrographic occupies more than 500km{sup 2} in six cities. It concentrates the largest industrial park of South America and only its margins are busy for almost a million inhabitants. The quality of its waters is, therefore, constant of concern of the whole society. In this work the Synchrotron Radiation Total Reflection X Ray Fluorescence (SR-TXRF) is applied for the identification and quantification of metals in waters and sediments of the Billings dam. A comparison of the levels of metals found with the maximum permissive limits established by the Brazilian legislation was made. The purpose of social context is to contribute for the preservation of the local springs and the rational use of its waters. For the field work they were chosen 19 collection points, included the margins and the central portion of the dam, in agreement with similar approaches the those adopted by the Company of Technology of Environmental Sanitation of Sao Paulo State (CETESB).The water and sediment samples, as well as the certified and standard samples, were analyzed at Brazilian Synchrotron Light Laboratory (LNLS), Campinas, SP, Brazil. Results indicate that the water and the sediments of the reservoir have concentrations above the legal limits. (author)

Visualization of root water uptake: quantification of deuterated water transport in roots using neutron radiography and numerical modeling.

Science.gov (United States)

Zarebanadkouki, Mohsen; Kroener, Eva; Kaestner, Anders; Carminati, Andrea

2014-10-01

Our understanding of soil and plant water relations is limited by the lack of experimental methods to measure water fluxes in soil and plants. Here, we describe a new method to noninvasively quantify water fluxes in roots. To this end, neutron radiography was used to trace the transport of deuterated water (D2O) into roots. The results showed that (1) the radial transport of D2O from soil to the roots depended similarly on diffusive and convective transport and (2) the axial transport of D2O along the root xylem was largely dominated by convection. To quantify the convective fluxes from the radiographs, we introduced a convection-diffusion model to simulate the D2O transport in roots. The model takes into account different pathways of water across the root tissue, the endodermis as a layer with distinct transport properties, and the axial transport of D2O in the xylem. The diffusion coefficients of the root tissues were inversely estimated by simulating the experiments at night under the assumption that the convective fluxes were negligible. Inverse modeling of the experiment at day gave the profile of water fluxes into the roots. For a 24-d-old lupine (Lupinus albus) grown in a soil with uniform water content, root water uptake was higher in the proximal parts of lateral roots and decreased toward the distal parts. The method allows the quantification of the root properties and the regions of root water uptake along the root systems. © 2014 American Society of Plant Biologists. All Rights Reserved.

Quantification of the least limiting water range in an oxisol using two methodological strategies

Directory of Open Access Journals (Sweden)

Wagner Henrique Moreira

2014-12-01

Full Text Available The least limiting water range (LLWR has been used as an indicator of soil physical quality as it represents, in a single parameter, the soil physical properties directly linked to plant growth, with the exception of temperature. The usual procedure for obtaining the LLWR involves determination of the water retention curve (WRC and the soil resistance to penetration curve (SRC in soil samples with undisturbed structure in the laboratory. Determination of the WRC and SRC using field measurements (in situ is preferable, but requires appropriate instrumentation. The objective of this study was to determine the LLWR from the data collected for determination of WRC and SRC in situ using portable electronic instruments, and to compare those determinations with the ones made in the laboratory. Samples were taken from the 0.0-0.1 m layer of a Latossolo Vermelho distrófico (Oxisol. Two methods were used for quantification of the LLWR: the traditional, with measurements made in soil samples with undisturbed structure; and in situ , with measurements of water content (θ, soil water potential (Ψ, and soil resistance to penetration (SR through the use of sensors. The in situ measurements of θ, Ψ and SR were taken over a period of four days of soil drying. At the same time, samples with undisturbed structure were collected for determination of bulk density (BD. Due to the limitations of measurement of Ψ by tensiometer, additional determinations of θ were made with a psychrometer (in the laboratory at the Ψ of -1500 kPa. The results show that it is possible to determine the LLWR by the θ, Ψ and SR measurements using the suggested approach and instrumentation. The quality of fit of the SRC was similar in both strategies. In contrast, the θ and Ψ in situ measurements, associated with those measured with a psychrometer, produced a better WRC description. The estimates of the LLWR were similar in both methodological strategies. The quantification of

On the Confounding Effect of Temperature on Chemical Shift-Encoded Fat Quantification

Science.gov (United States)

Hernando, Diego; Sharma, Samir D.; Kramer, Harald; Reeder, Scott B.

2014-01-01

Purpose To characterize the confounding effect of temperature on chemical shift-encoded (CSE) fat quantification. Methods The proton resonance frequency of water, unlike triglycerides, depends on temperature. This leads to a temperature dependence of the spectral models of fat (relative to water) that are commonly used by CSE-MRI methods. Simulation analysis was performed for 1.5 Tesla CSE fat–water signals at various temperatures and echo time combinations. Oil–water phantoms were constructed and scanned at temperatures between 0 and 40°C using spectroscopy and CSE imaging at three echo time combinations. An explanted human liver, rejected for transplantation due to steatosis, was scanned using spectroscopy and CSE imaging. Fat–water reconstructions were performed using four different techniques: magnitude and complex fitting, with standard or temperature-corrected signal modeling. Results In all experiments, magnitude fitting with standard signal modeling resulted in large fat quantification errors. Errors were largest for echo time combinations near TEinit ≈ 1.3 ms, ΔTE ≈ 2.2 ms. Errors in fat quantification caused by temperature-related frequency shifts were smaller with complex fitting, and were avoided using a temperature-corrected signal model. Conclusion Temperature is a confounding factor for fat quantification. If not accounted for, it can result in large errors in fat quantifications in phantom and ex vivo acquisitions. PMID:24123362

Improved Method for the Detection and Quantification of Naegleria fowleri in Water and Sediment Using Immunomagnetic Separation and Real-Time PCR

Directory of Open Access Journals (Sweden)

Bonnie J. Mull

2013-01-01

Full Text Available Primary amebic meningoencephalitis (PAM is a rare and typically fatal infection caused by the thermophilic free-living ameba, Naegleria fowleri. In 2010, the first confirmed case of PAM acquired in Minnesota highlighted the need for improved detection and quantification methods in order to study the changing ecology of N. fowleri and to evaluate potential risk factors for increased exposure. An immunomagnetic separation (IMS procedure and real-time PCR TaqMan assay were developed to recover and quantify N. fowleri in water and sediment samples. When one liter of lake water was seeded with N. fowleri strain CDC:V212, the method had an average recovery of 46% and detection limit of 14 amebas per liter of water. The method was then applied to sediment and water samples with unknown N. fowleri concentrations, resulting in positive direct detections by real-time PCR in 3 out of 16 samples and confirmation of N. fowleri culture in 6 of 16 samples. This study has resulted in a new method for detection and quantification of N. fowleri in water and sediment that should be a useful tool to facilitate studies of the physical, chemical, and biological factors associated with the presence and dynamics of N. fowleri in environmental systems.

Water type quantification in the Skagerrak, the Kattegat and off the Jutland west coast

Directory of Open Access Journals (Sweden)

Trond Kristiansen

2015-04-01

Full Text Available An extensive data series of salinity, nutrients and coloured dissolved organic material (CDOM was collected in the Skagerrak, the northern part of the Kattegat and off the Jutland west coast in April each year during the period 1996–2000, by the Institute of Marine Research in Norway. In this month, after the spring bloom, German Bight Water differs from its surrounding waters by a higher nitrate content and higher nitrate/phosphate and nitrate/silicate ratios. The spreading of this water type into the Skagerrak is of special interest with regard to toxic algal blooms. The quantification of the spatial distributions of the different water types required the development of a new algorithm for the area containing the Norwegian Coastal Current, while an earlier Danish algorithm was applied for the rest of the area. From the upper 50 m a total of 2227 observations of salinity and CDOM content have been used to calculate the mean concentration of water from the German Bight, the North Sea (Atlantic water, the Baltic Sea and Norwegian rivers. The Atlantic Water was the dominant water type, with a mean concentration of 79%, German Bight Water constituted 11%, Baltic Water 8%, and Norwegian River Water 2%. At the surface the mean percentages of these water types were found to be 68%, 15%, 15%, and 3%, respectively. Within the northern part of the Skagerrak, closer to the Norwegian coast, the surface waters were estimated to consist of 74% Atlantic Water, 20% Baltic Water, and 7% Norwegian River Water. The analysis indicates that the content of German Bight Water in this part is less than 5%.

Principal-subordinate hierarchical multi-objective programming model of initial water rights allocation

Directory of Open Access Journals (Sweden)

Dan Wu

2009-06-01

Full Text Available The principal-subordinate hierarchical multi-objective programming model of initial water rights allocation was developed based on the principle of coordinated and sustainable development of different regions and water sectors within a basin. With the precondition of strictly controlling maximum emissions rights, initial water rights were allocated between the first and the second levels of the hierarchy in order to promote fair and coordinated development across different regions of the basin and coordinated and efficient water use across different water sectors, realize the maximum comprehensive benefits to the basin, promote the unity of quantity and quality of initial water rights allocation, and eliminate water conflict across different regions and water sectors. According to interactive decision-making theory, a principal-subordinate hierarchical interactive iterative algorithm based on the satisfaction degree was developed and used to solve the initial water rights allocation model. A case study verified the validity of the model.

A HPLC method for the quantification of butyramide and acetamide at ppb levels in hydrogeothermal waters

Energy Technology Data Exchange (ETDEWEB)

Gracy Elias; Earl D. Mattson; Jessica E. Little

2012-01-01

A quantitative analytical method to determine butyramide and acetamide concentrations at the low ppb levels in geothermal waters has been developed. The analytes are concentrated in a preparation step by evaporation and analyzed using HPLC-UV. Chromatographic separation is achieved isocratically with a RP C-18 column using a 30 mM phosphate buffer solution with 5 mM heptane sulfonic acid and methanol (98:2 ratio) as the mobile phase. Absorbance is measured at 200 nm. The limit of detection (LOD) for BA and AA were 2.0 {mu}g L{sup -1} and 2.5 {mu}g L{sup -1}, respectively. The limit of quantification (LOQ) for BA and AA were 5.7 {mu}g L{sup -1} and 7.7 {mu}g L{sup -1}, respectively, at the detection wavelength of 200 nm. Attaining these levels of quantification better allows these amides to be used as thermally reactive tracers in low-temperature hydrogeothermal systems.

Towards tributyltin quantification in natural water at the Environmental Quality Standard level required by the Water Framework Directive.

Science.gov (United States)

Alasonati, Enrica; Fettig, Ina; Richter, Janine; Philipp, Rosemarie; Milačič, Radmila; Sčančar, Janez; Zuliani, Tea; Tunç, Murat; Bilsel, Mine; Gören, Ahmet Ceyhan; Fisicaro, Paola

2016-11-01

The European Union (EU) has included tributyltin (TBT) and its compounds in the list of priority water pollutants. Quality standards demanded by the EU Water Framework Directive (WFD) require determination of TBT at so low concentration level that chemical analysis is still difficult and further research is needed to improve the sensitivity, the accuracy and the precision of existing methodologies. Within the frame of a joint research project "Traceable measurements for monitoring critical pollutants under the European Water Framework Directive" in the European Metrology Research Programme (EMRP), four metrological and designated institutes have developed a primary method to quantify TBT in natural water using liquid-liquid extraction (LLE) and species-specific isotope dilution mass spectrometry (SSIDMS). The procedure has been validated at the Environmental Quality Standard (EQS) level (0.2ngL(-1) as cation) and at the WFD-required limit of quantification (LOQ) (0.06ngL(-1) as cation). The LOQ of the methodology was 0.06ngL(-1) and the average measurement uncertainty at the LOQ was 36%, which agreed with WFD requirements. The analytical difficulties of the method, namely the presence of TBT in blanks and the sources of measurement uncertainties, as well as the interlaboratory comparison results are discussed in detail. Copyright © 2016 Elsevier B.V. All rights reserved.

Neutron Time-of-Flight Quantification of Water Desorption Isotherms of Montmorillonite

DEFF Research Database (Denmark)

Gates, Will P.; Bordallo, Heloisa N.; Aldridge, Laurence P.

2012-01-01

enabled us to differentiate at least two water motions during dehydration of Ca- and Na-SAz-1 (initially equilibrated at RH = 55%) by using a "controlled water loss" time-of-flight procedure. This work confirms that (a) interlayer and cationic water in dioctahedral smectites are characterized by slower...... motions than interparticle water, (b) interlayer cations influenced the dynamics of water loss, probably through its affect on clay fabric, and (c) interparticle water behaves more like bulk water. At 55% RH the Ca montmorillonite held more interparticle water, but on dehydration under controlled......The multiple energy states of water held by surfaces of a clay mineral can be effectively probed with time-of-flight and fixed elastic window neutron scattering. We used these techniques to quantitatively differentiate water types, including rotational and translational diffusions, in Ca- and Na...

Paper-Based Analytical Device for Zinc Ion Quantification in Water Samples with Power-Free Analyte Concentration

Directory of Open Access Journals (Sweden)

Hiroko Kudo

2017-04-01

Full Text Available Insufficient sensitivity is a general issue of colorimetric paper-based analytical devices (PADs for trace analyte detection, such as metal ions, in environmental water. This paper demonstrates the colorimetric detection of zinc ions (Zn2+ on a paper-based analytical device with an integrated analyte concentration system. Concentration of Zn2+ ions from an enlarged sample volume (1 mL has been achieved with the aid of a colorimetric Zn2+ indicator (Zincon electrostatically immobilized onto a filter paper substrate in combination with highly water-absorbent materials. Analyte concentration as well as sample pretreatment, including pH adjustment and interferent masking, has been elaborated. The resulting device enables colorimetric quantification of Zn2+ in environmental water samples (tap water, river water from a single sample application. The achieved detection limit of 0.53 μM is a significant improvement over that of a commercial colorimetric Zn2+ test paper (9.7 μM, demonstrating the efficiency of the developed analyte concentration system not requiring any equipment.

40 CFR Appendix B to Part 132 - Great Lakes Water Quality Initiative

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 21 2010-07-01 2010-07-01 false Great Lakes Water Quality Initiative B Appendix B to Part 132 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) WATER PROGRAMS... Water Quality Initiative Methodology for Deriving Bioaccumulation Factors Great Lakes States and Tribes...

Quantification of trace metals in water using complexation and filter concentration.

Science.gov (United States)

Dolgin, Bella; Bulatov, Valery; Japarov, Julia; Elish, Eyal; Edri, Elad; Schechter, Israel

2010-06-15

Various metals undergo complexation with organic reagents, resulting in colored products. In practice, their molar absorptivities allow for quantification in the ppm range. However, a proper pre-concentration of the colored complex on paper filter lowers the quantification limit to the low ppb range. In this study, several pre-concentration techniques have been examined and compared: filtering the already complexed mixture, complexation on filter, and dipping of dye-covered filter in solution. The best quantification has been based on the ratio of filter reflectance at a certain wavelength to that at zero metal concentration. The studied complex formations (Ni ions with TAN and Cd ions with PAN) involve production of nanoparticle suspensions, which are associated with complicated kinetics. The kinetics of the complexation of Ni ions with TAN has been investigated and optimum timing could be found. Kinetic optimization in regard to some interferences has also been suggested.

A propidium monoazide–quantitative PCR method for the detection and quantification of viable Enterococcus faecalis in large-volume samples of marine waters

KAUST Repository

Salam, Khaled W.; El-Fadel, Mutasem E.; Barbour, Elie K.; Saikaly, Pascal

2014-01-01

The development of rapid detection assays of cell viability is essential for monitoring the microbiological quality of water systems. Coupling propidium monoazide with quantitative PCR (PMA-qPCR) has been successfully applied in different studies for the detection and quantification of viable cells in small-volume samples (0.25-1.00 mL), but it has not been evaluated sufficiently in marine environments or in large-volume samples. In this study, we successfully integrated blue light-emitting diodes for photoactivating PMA and membrane filtration into the PMA-qPCR assay for the rapid detection and quantification of viable Enterococcus faecalis cells in 10-mL samples of marine waters. The assay was optimized in phosphate-buffered saline and seawater, reducing the qPCR signal of heat-killed E. faecalis cells by 4 log10 and 3 log10 units, respectively. Results suggest that high total dissolved solid concentration (32 g/L) in seawater can reduce PMA activity. Optimal PMA-qPCR standard curves with a 6-log dynamic range and detection limit of 102 cells/mL were generated for quantifying viable E. faecalis cells in marine waters. The developed assay was compared with the standard membrane filter (MF) method by quantifying viable E. faecalis cells in seawater samples exposed to solar radiation. The results of the developed PMA-qPCR assay did not match that of the standard MF method. This difference in the results reflects the different physiological states of E. faecalis cells in seawater. In conclusion, the developed assay is a rapid (∼5 h) method for the quantification of viable E. faecalis cells in marine recreational waters, which should be further improved and tested in different seawater settings. © 2014 Springer-Verlag Berlin Heidelberg.

A propidium monoazide–quantitative PCR method for the detection and quantification of viable Enterococcus faecalis in large-volume samples of marine waters

KAUST Repository

Salam, Khaled W.

2014-08-23

The development of rapid detection assays of cell viability is essential for monitoring the microbiological quality of water systems. Coupling propidium monoazide with quantitative PCR (PMA-qPCR) has been successfully applied in different studies for the detection and quantification of viable cells in small-volume samples (0.25-1.00 mL), but it has not been evaluated sufficiently in marine environments or in large-volume samples. In this study, we successfully integrated blue light-emitting diodes for photoactivating PMA and membrane filtration into the PMA-qPCR assay for the rapid detection and quantification of viable Enterococcus faecalis cells in 10-mL samples of marine waters. The assay was optimized in phosphate-buffered saline and seawater, reducing the qPCR signal of heat-killed E. faecalis cells by 4 log10 and 3 log10 units, respectively. Results suggest that high total dissolved solid concentration (32 g/L) in seawater can reduce PMA activity. Optimal PMA-qPCR standard curves with a 6-log dynamic range and detection limit of 102 cells/mL were generated for quantifying viable E. faecalis cells in marine waters. The developed assay was compared with the standard membrane filter (MF) method by quantifying viable E. faecalis cells in seawater samples exposed to solar radiation. The results of the developed PMA-qPCR assay did not match that of the standard MF method. This difference in the results reflects the different physiological states of E. faecalis cells in seawater. In conclusion, the developed assay is a rapid (∼5 h) method for the quantification of viable E. faecalis cells in marine recreational waters, which should be further improved and tested in different seawater settings. © 2014 Springer-Verlag Berlin Heidelberg.

Impact of polymeric membrane filtration of oil sands process water on organic compounds quantification.

Science.gov (United States)

Moustafa, Ahmed M A; Kim, Eun-Sik; Alpatova, Alla; Sun, Nian; Smith, Scott; Kang, Seoktae; Gamal El-Din, Mohamed

2014-01-01

The interaction between organic fractions in oil sands process-affected water (OSPW) and three polymeric membranes with varying hydrophilicity (nylon, polyvinylidene fluoride and polytetrafluoroethylene) at different pHs was studied to evaluate the impact of filtration on the quantification of acid-extractable fraction (AEF) and naphthenic acids (NAs). Four functional groups predominated in OSPW (amine, phosphoryl, carboxyl and hydroxyl) as indicated by the linear programming method. The nylon membranes were the most hydrophilic and exhibited the lowest AEF removal at pH of 8.7. However, the adsorption of AEF on the membranes increased as the pH of OSPW decreased due to hydrophobic interactions between the membrane surfaces and the protonated molecules. The use of ultra pressure liquid chromatography-high resolution mass spectrometry (UPLC/HRMS) showed insignificant adsorption of NAs on the tested membranes at pH 8.7. However, 26±2.4% adsorption of NAs was observed at pH 5.3 following the protonation of NAs species. For the nylon membrane, excessive carboxylic acids in the commercial NAs caused the formation of negatively charged assisted hydrogen bonds, resulting in increased adsorption at pH 8.2 (25%) as compared to OSPW (0%). The use of membranes for filtration of soluble compounds from complex oily wastewaters before quantification analysis of AEF and NAs should be examined prior to application.

Validated electrochemical and chromatographic quantifications of some antibiotic residues in pharmaceutical industrial waste water.

Science.gov (United States)

Ibrahim, Heba K; Abdel-Moety, Mona M; Abdel-Gawad, Sherif A; Al-Ghobashy, Medhat A; Kawy, Mohamed Abdel

2017-03-01

Realistic implementation of ion selective electrodes (ISEs) into environmental monitoring programs has always been a challenging task. This could be largely attributed to difficulties in validation of ISE assay results. In this study, the electrochemical response of amoxicillin trihydrate (AMX), ciprofloxacin hydrochloride (CPLX), trimethoprim (TMP), and norfloxacin (NFLX) was studied by the fabrication of sensitive membrane electrodes belonging to two types of ISEs, which are polyvinyl chloride (PVC) membrane electrodes and glassy carbon (GC) electrodes. Linear response for the membrane electrodes was in the concentration range of 10 -5 -10 -2  mol/L. For the PVC membrane electrodes, Nernstian slopes of 55.1, 56.5, 56.5, and 54.0 mV/decade were achieved over a pH 4-8 for AMX, CPLX, and NFLX, respectively, and pH 3-6 for TMP. On the other hand, for GC electrodes, Nernstian slopes of 59.1, 58.2, 57.0, and 58.2 mV/decade were achieved over pH 4-8 for AMX, CPLX, and NFLX, respectively, and pH 3-6 for TMP. In addition to assay validation to international industry standards, the fabricated electrodes were also cross-validated relative to conventional separation techniques; high performance liquid chromatography (HPLC), and thin layer chromatography (TLC)-densitometry. The HPLC assay was applied in concentration range of 0.5-10.0 μg/mL, for all target analytes. The TLC-densitometry was adopted over a concentration range of 0.3-1.0 μg/band, for AMX, and 0.1-0.9 μg/band, for CPLX, NFLX, and TMP. The proposed techniques were successfully applied for quantification of the selected drugs either in pure form or waste water samples obtained from pharmaceutical plants. The actual waste water samples were subjected to solid phase extraction (SPE) for pretreatment prior to the application of chromatographic techniques (HPLC and TLC-densitometry). On the other hand, the fabricated electrodes were successfully applied for quantification of the antibiotic residues in actual

Satellite Monitoring of Boston Harbor Water Quality: Initial Investigations

Science.gov (United States)

Sheldon, P.; Chen, R. F.; Schaaf, C.; Pahlevan, N.; Lee, Z.

2016-02-01

The transformation of Boston Harbor from the "dirtiest in America" to a National Park Area is one of the most remarkable estuarine recoveries in the world. A long-term water quality dataset from 1991 to present exists in Boston Harbor due to a $3. 8 billion lawsuit requiring the harbor clean-up. This project uses discrete water sampling and underway transects with a towed vehicle coordinated with Landsat 7 and Landsat 8 to create surface maps of chlorophyll a (Chl a), dissolved organic matter (CDOM and DOC), total suspended solids (TSS), diffuse attenuation coefficient (Kd_490), and photic depth in Boston Harbor. In addition, 3 buoys have been designed, constructed, and deployed in Boston Harbor that measure Chl a and CDOM fluorescence, optical backscatter, salinity, temperature, and meteorological parameters. We are initially using summer and fall of 2015 to develop atmospheric corrections for conditions in Boston Harbor and develop algorithms for Landsat 8 data to estimate in water photic depth, TSS, Chl a, Kd_490, and CDOM. We will report on initial buoy and cruise data and show 2015 Landsat-derived distributions of water quality parameters. It is our hope that once algorithms for present Landsat imagery can be developed, historical maps of water quality can be constructed using in water data back to 1991.

Reliable quantification of phthalates in environmental matrices (air, water, sludge, sediment and soil): a review.

Science.gov (United States)

Net, Sopheak; Delmont, Anne; Sempéré, Richard; Paluselli, Andrea; Ouddane, Baghdad

2015-05-15

Because of their widespread application, phthalates or phthalic acid esters (PAEs) are ubiquitous in the environment. Their presence has attracted considerable attention due to their potential impacts on ecosystem functioning and on public health, so their quantification has become a necessity. Various extraction procedures as well as gas/liquid chromatography and mass spectrometry detection techniques are found as suitable for reliable detection of such compounds. However, PAEs are ubiquitous in the laboratory environment including ambient air, reagents, sampling equipment, and various analytical devices, that induces difficult analysis of real samples with a low PAE background. Therefore, accurate PAE analysis in environmental matrices is a challenging task. This paper reviews the extensive literature data on the techniques for PAE quantification in natural media. Sampling, sample extraction/pretreatment and detection for quantifying PAEs in different environmental matrices (air, water, sludge, sediment and soil) have been reviewed and compared. The concept of "green analytical chemistry" for PAE determination is also discussed. Moreover useful information about the material preparation and the procedures of quality control and quality assurance are presented to overcome the problem of sample contamination and these encountered due to matrix effects in order to avoid overestimating PAE concentrations in the environment. Copyright © 2015 Elsevier B.V. All rights reserved.

Multiclass method for the quantification of 92 veterinary antimicrobial drugs in livestock excreta, wastewater, and surface water by liquid chromatography with tandem mass spectrometry.

Science.gov (United States)

Gao, Jinfang; Cui, Yonghui; Tao, Yanfei; Huang, Lingli; Peng, Dapeng; Xie, Shuyu; Wang, Xu; Liu, Zhenli; Chen, Dongmei; Yuan, Zonghui

2016-11-01

A simple multiresidue method was developed for detecting and quantifying 92 veterinary antimicrobial drugs from eight classes (β-lactams, quinolones, sulfonamides, tetracyclines, lincomycins, macrolides, chloramphenicols, and pleuromutilin) in livestock excreta and water by liquid chromatography with tandem mass spectrometry. The feces samples were extracted by ultrasound-assisted extraction with a mixture of acetonitrile/water (80:20, v/v) and edetate disodium, followed by a cleanup using solid-phase extraction with an amino cartridge. Water samples were purified with hydrophilic-lipophilic balance solid-phase extraction column. Urine samples were extracted with acetonitrile and edetate disodium. Detection of veterinary antimicrobial drugs was achieved by liquid chromatography with tandem mass spectrometry using both positive and negative electrospray ionization mode. The recovery values of veterinary antimicrobial drugs in feces, urine, and water samples were 75-99, 85-110, and 85-101% and associated relative standard deviations were less than 15, 10, and 8%, respectively. The limits of quantification in feces, urine, and water samples were 0.5-1, 0.5-1, and 0.01-0.05 μg/L, respectively. This method was applied to determine real samples obtained from local farms and provides reliable quantification and identification results of 92 veterinary antimicrobial drugs in livestock excreta and water. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

75 FR 77821 - Agricultural Water Enhancement Program and Cooperative Conservation Partnership Initiative

Science.gov (United States)

2010-12-14

... Corporation Agricultural Water Enhancement Program and Cooperative Conservation Partnership Initiative AGENCY... Conservation Service (NRCS) through either the Agricultural Water Enhancement Program (AWEP) or the Cooperative... concerns to be addressed, and specifically what water conservation resource issues and water quality...

In vivo quantification of brain metabolites by 1H-MRS using water as an internal standard

DEFF Research Database (Denmark)

Christiansen, P; Henriksen, O; Stubgaard, M

1993-01-01

in quantification of N-acetyl aspartate (NAA) concentration was about 1-2 mM (6-12%). Also in vivo a good linearity between water signal and selected voxel size was seen. The same was true for the studied metabolites, N-acetyl aspartate (NAA), creatine/phosphocreatine (Cr/PCr), and choline (Cho). Calculated average...... concentrations of NAA, Cr/PCr, and Cho in the occipital lobe of the brain in five healthy volunteers were (mean +/- 1 SD) 11.6 +/- 1.3 mM, 7.6 +/- 1.4 mM, and 1.7 +/- 0.5 mM. The results indicate that the method presented offers reasonable estimation of metabolite concentrations in the brain in vivo...

Quantification of resilience to water scarcity, a dynamic measure in time and space

Directory of Open Access Journals (Sweden)

S. P. Simonovic

2016-05-01

Full Text Available There are practical links between water resources management, climate change adaptation and sustainable development leading to reduction of water scarcity risk and re-enforcing resilience as a new development paradigm. Water scarcity, due to the global change (population growth, land use change and climate change, is of serious concern since it can cause loss of human lives and serious damage to the economy of a region. Unfortunately, in many regions of the world, water scarcity is, and will be unavoidable in the near future. As the scarcity is increasing, at the same time it erodes resilience, therefore global change has a magnifying effect on water scarcity risk. In the past, standard water resources management planning considered arrangements for prevention, mitigation, preparedness and recovery, as well as response. However, over the last ten years substantial progress has been made in establishing the role of resilience in sustainable development. Dynamic resilience is considered as a novel measure that provides for better understanding of temporal and spatial dynamics of water scarcity. In this context, a water scarcity is seen as a disturbance in a complex physical-socio-economic system. Resilience is commonly used as a measure to assess the ability of a system to respond and recover from a failure. However, the time independent static resilience without consideration of variability in space does not provide sufficient insight into system's ability to respond and recover from the failure state and was mostly used as a damage avoidance measure. This paper provides an original systems framework for quantification of resilience. The framework is based on the definition of resilience as the ability of physical and socio-economic systems to absorb disturbance while still being able to continue functioning. The disturbance depends on spatial and temporal perspectives and direct interaction between impacts of disturbance (social, health

Quantification of bisphenol A, 353-nonylphenol and their chlorinated derivatives in drinking water treatment plants.

Science.gov (United States)

Dupuis, Antoine; Migeot, Virginie; Cariot, Axelle; Albouy-Llaty, Marion; Legube, Bernard; Rabouan, Sylvie

2012-11-01

Bisphenol A (BPA) and nonylphenols (NP) are of major concern to public health due to their high potential for human exposure and to their demonstrated toxicity (endocrine disruptor effect). A limited number of studies have shown that BPA and NP are present in drinking water. The chlorinated derivatives that may be formed during the chlorination step in drinking water treatment plants (DWTP) exhibit a higher level of estrogenic activity than their parent compounds. The aim of this study was to investigate BPA, 353NP, and their chlorinated derivative concentrations using an accurate and reproducible method of quantification. This method was applied to both surface and treated water samples from eight French DWTPs producing from surface water. Solid-phase extraction followed by liquid chromatography-tandem mass spectrometry was developed in order to quantify target compounds from water samples. The limits of detection ranged from 0.3 to 2.3 ng/L for BPA and chlorinated BPA and from 1.4 to 63.0 ng/L for 353NP and chlorinated 353NP. BPA and 353NP were found in most analyzed water samples, at a level ranging from 2.0 to 29.7 ng/L and from 0 to 124.9 ng/L, respectively. In most of DWTPs a decrease of BPA and 353NP was observed between surface water and treated water (36.6 to 78.9 % and 2.2 to 100.0 % for BPA and 353NP, respectively). Neither chlorinated BPA nor chlorinated 353NP was detected. Even though BPA and 353NP have been largely removed in the DWTPs studied, they have not been completely eliminated, and drinking water may consequently remain a source of human exposure.

Absolute quantitative proton NMR spectroscopy based on the amplitude of the local water suppression pulse. Quantification of brain water and metabolites

DEFF Research Database (Denmark)

Danielsen, E R; Henriksen, O

1994-01-01

Quantification in localized proton NMR spectroscopy has been achieved by various methods in recent years. A new method for absolute quantification is described in this paper. The method simultaneously rules out problems with B1 field inhomogeneity and coil loading, utilizing a relation between th......M and [NAA] = 9.15 +/- 0.74 nM. It is concluded that the quantification method is easily applied in vivo, and that the absolute concentrations obtained are similar to results in other studies except those relying on assumptions of the concentration of an internal reference. The advantage...

COGNITIVE AND PHYSIOLOGICAL INITIAL RESPONSES DURING COOL WATER IMMERSION

Directory of Open Access Journals (Sweden)

Alex Buoite Stella

2014-12-01

Full Text Available The initial responses during water immersion are the first mechanisms reacting to a strong stimulation of superficial nervous cold receptors. Cold shock induces tachycardia, hypertension, tachypnea, hyperventilation, and reduced end-tidal carbon dioxide fraction. These initial responses are observed immediately after the immersion, they last for about 3 min and have been also reported in water temperatures up to 25 °C. the aim of the present study was to observe cognitive and physiological functions during immersion in water at cool temperature. Oxygen consumption, ventilation, respiratory frequency, heart rate and expired fraction of oxygen were measured during the experiment. A code substitution test was used to evaluate executive functions and, specifically, working memory. This cognitive test was repeated consecutively 6 times, for a total duration of 5 minutes. Healthy volunteers (n = 9 performed the test twice in a random order, once in a dry thermoneutral environment and once while immersed head-out in 18 °C water. The results indicated that all the physiological parameters were increased during cool water immersion when compared with the dry thermoneutral condition (p < 0.05. Cognitive performance was reduced during the cool water immersion when compared to the control condition only during the first 2 min (p < 0.05. Our results suggest that planning the best rescue strategy could be partially impaired not only because of panic, but also because of the cold shock.

Quantification of water resources uncertainties in the Luvuvhu sub-basin of the Limpopo river basin

Science.gov (United States)

Oosthuizen, N.; Hughes, D.; Kapangaziwiri, E.; Mwenge Kahinda, J.; Mvandaba, V.

2018-06-01

In the absence of historical observed data, models are generally used to describe the different hydrological processes and generate data and information that will inform management and policy decision making. Ideally, any hydrological model should be based on a sound conceptual understanding of the processes in the basin and be backed by quantitative information for the parameterization of the model. However, these data are often inadequate in many sub-basins, necessitating the incorporation of the uncertainty related to the estimation process. This paper reports on the impact of the uncertainty related to the parameterization of the Pitman monthly model and water use data on the estimates of the water resources of the Luvuvhu, a sub-basin of the Limpopo river basin. The study reviews existing information sources associated with the quantification of water balance components and gives an update of water resources of the sub-basin. The flows generated by the model at the outlet of the basin were between 44.03 Mm3 and 45.48 Mm3 per month when incorporating +20% uncertainty to the main physical runoff generating parameters. The total predictive uncertainty of the model increased when water use data such as small farm and large reservoirs and irrigation were included. The dam capacity data was considered at an average of 62% uncertainty mainly as a result of the large differences between the available information in the national water resources database and that digitised from satellite imagery. Water used by irrigated crops was estimated with an average of about 50% uncertainty. The mean simulated monthly flows were between 38.57 Mm3 and 54.83 Mm3 after the water use uncertainty was added. However, it is expected that the uncertainty could be reduced by using higher resolution remote sensing imagery.

Method validation using weighted linear regression models for quantification of UV filters in water samples.

Science.gov (United States)

da Silva, Claudia Pereira; Emídio, Elissandro Soares; de Marchi, Mary Rosa Rodrigues

2015-01-01

This paper describes the validation of a method consisting of solid-phase extraction followed by gas chromatography-tandem mass spectrometry for the analysis of the ultraviolet (UV) filters benzophenone-3, ethylhexyl salicylate, ethylhexyl methoxycinnamate and octocrylene. The method validation criteria included evaluation of selectivity, analytical curve, trueness, precision, limits of detection and limits of quantification. The non-weighted linear regression model has traditionally been used for calibration, but it is not necessarily the optimal model in all cases. Because the assumption of homoscedasticity was not met for the analytical data in this work, a weighted least squares linear regression was used for the calibration method. The evaluated analytical parameters were satisfactory for the analytes and showed recoveries at four fortification levels between 62% and 107%, with relative standard deviations less than 14%. The detection limits ranged from 7.6 to 24.1 ng L(-1). The proposed method was used to determine the amount of UV filters in water samples from water treatment plants in Araraquara and Jau in São Paulo, Brazil. Copyright © 2014 Elsevier B.V. All rights reserved.

Automatic quantification of subarachnoid hemorrhage on noncontrast CT

NARCIS (Netherlands)

Boers, Anna Maria Merel; Zijlstra, I.A.; Gathier, C.S.; van den Berg, R.; Slump, Cornelis H.; Marquering, H.A.; Majoie, C.B.

2014-01-01

Quantification of blood after SAH on initial NCCT is an important radiologic measure to predict patient outcome and guide treatment decisions. In current scales, hemorrhage volume and density are not accounted for. The purpose of this study was to develop and validate a fully automatic method for

Initial water repellency affected organic matter depletion rates of manure amended soils in Sri Lanka

Directory of Open Access Journals (Sweden)

Leelamanie D.A.L.

2014-12-01

Full Text Available The wetting rate of soil is a measure of water repellency, which is a property of soils that prevents water from wetting or penetrating into dry soil. The objective of the present research was to examine the initial water repellency of organic manure amended soil, and its relation to the soil organic matter (SOM depletion rates in the laboratory. Soil collected from the Wilpita natural forest, Sri Lanka, was mixed with organic manure to prepare soil samples with 0, 5, 10, 25, and 50% organic manure contents. Locally available cattle manure (CM, goat manure (GM, and Casuarina equisetifolia leaves (CE were used as the organic manure amendments. Organic matter content of soils was measured in 1, 3, 7, 14, and 30 days intervals under the laboratory conditions with 74±5% relative humidity at 28±1°C. Initial water repellency of soil samples was measured as the wetting rates using the water drop penetration time (WDPT test. Initial water repellency increased with increasing SOM content showing higher increasing rate for hydrophobic CE amended samples compared with those amended with CM and GM. The relation between water repellency and SOM content was considered to be governed by the original hydrophobicities of added manures. The SOM contents of all the soil samples decreased with the time to reach almost steady level at about 30 d. The initial SOM depletion rates were negatively related with the initial water repellency. However, all the CE amended samples initially showed prominent low SOM depletion rates, which were not significantly differed with the amended manure content or the difference in initial water repellency. It is explicable that the original hydrophobicity of the manure as well has a potentially important effect on initiation of SOM decomposition. In contrast, the overall SOM depletion rate can be attributed to the initial water repellency of the manure amended sample, however, not to the original hydrophobicity of the amended manure

Direct quantification of thorium, uranium and rare earth element concentration in natural waters by ICP-MS

International Nuclear Information System (INIS)

Palmieri, Helena E.L.; Knupp, Eliana A.N.; Auler, Lucia M.L.A.; Gomes, Luiza M.F.; Windmoeller, Claudia C.

2011-01-01

A direct quantification of the thorium, uranium and rare earth elements in natural water samples using inductively coupled plasma mass spectrometry (ICP-MS) was evaluated with respect to selection of isotopes, detection limits, accuracy, precision, matrix effects for each isotope and spectral interferences. Accuracy of the method was evaluated by analysis of Spectra pure Standards (SPS-SW1 Batch 116-Norway) for the rare earth elements (REEs), thorium, uranium, scandium and yttrium. The measurements were carried out for each of the following analytical isotopes: 139 La, 140 Ce, 141 Pr, 143 Nd, 147 Sm, 151 Eu, 160 Gd, 159 Tb, 163 Dy, 165 Ho, 167 Er, 16 9Tm, 174 Yb, 175 Lu, 45 Sc, 89 Y, 232 Th and 238 U. Recovery percentage values found in these certified samples varied between 95 and 107%. The method was applied to the analysis of spring water samples collected in fountains spread throughout the historical towns of Ouro Preto, Mariana, Sabara and Diamantina in the state of Minas Gerais, Brazil. In the past these fountains played an essential and strategic role in supplying these towns with potable water. Until today this water is used by both the local population and tourists who believe in its quality. REE were quantified at levels comparable to those found in estuarine waters, which are characterized by low REE concentrations. In two fountains analyzed the concentration of REEs presented high levels and thus possible health risks for humans may not be excluded. (author)

Direct qPCR quantification using the Quantifiler(®) Trio DNA quantification kit.

Science.gov (United States)

Liu, Jason Yingjie

2014-11-01

The effectiveness of a direct quantification assay is essential to the adoption of the combined direct quantification/direct STR workflow. In this paper, the feasibility of using the Quantifiler(®) Trio DNA quantification kit for the direct quantification of forensic casework samples was investigated. Both low-level touch DNA samples and blood samples were collected on PE swabs and quantified directly. The increased sensitivity of the Quantifiler(®) Trio kit enabled the detection of less than 10pg of DNA in unprocessed touch samples and also minimizes the stochastic effect experienced by different targets in the same sample. The DNA quantity information obtained from a direct quantification assay using the Quantifiler(®) Trio kit can also be used to accurately estimate the optimal input DNA quantity for a direct STR amplification reaction. The correlation between the direct quantification results (Quantifiler(®) Trio kit) and the direct STR results (GlobalFiler™ PCR amplification kit(*)) for low-level touch DNA samples indicates that direct quantification using the Quantifiler(®) Trio DNA quantification kit is more reliable than the Quantifiler(®) Duo DNA quantification kit for predicting the STR results of unprocessed touch DNA samples containing less than 10pg of DNA. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Water Footprint Symposium: where next for water footprint and water assessment methodology?

NARCIS (Netherlands)

Tillotson, M.R.; Kiu, J.; Guan, D.; Wu, P.; Zhao, Xu; Zhang, Guoping; Pfister, S.; Pahlow, Markus

2014-01-01

Recognizing the need for a comprehensive review of the tools and metrics for the quantification and assessment of water footprints, and allowing for the opportunity for open discussion on the challenges and future of water footprinting methodology, an international symposium on water footprint was

Water Footprint Symposium : where next for water footprint and water assessment methodology?

NARCIS (Netherlands)

Tillotson, Martin R.; Liu, Junguo; Guan, Dabo; Wu, Pute; Zhao, Xu; Zhang, Guoping; Pfister, Stephan; Pahlow, Markus

2014-01-01

Recognizing the need for a comprehensive review of the tools and metrics for the quantification and assessment of water footprints, and allowing for the opportunity for open discussion on the challenges and future of water footprinting methodology, an international symposium on water footprint was

Crack embryo formation before crack initiation and growth in high temperature water

International Nuclear Information System (INIS)

Arioka, Koji; Yamada, Takuyo; Terachi, Takumi; Miyamoto, Tomoki

2008-01-01

Crack growth measurements were performed in high temperature water and in air to examine the role of creep on IGSCC growth using cold rolled non-sensitized Type316(UNS S31600), TT690 alloy, MA600 alloy, and Carbon steel (STPT42). In addition, crack initiation tests were performed also in high temperature water and in air using specially designed CT specimen. The obtained major results are as follows: (1) TT690 did crack in intergranularly in hydrogenated high temperature water if material is cold worked in heavily. (2) Cold worked carbon steel also cracked in intergranularly in dearated high temperature water. (3) Intergranular crack growth was recognized on cold worked 316, TT690, MA600, and carbon steel even in air which might be crack embryo of IGSCC. (4) Simple Arrhenius type temperature dependence was observed on IGSCC in high temperature water and creep crack growth in air. This suggested that intergranular crack growth rate was determined by some thermal activated reaction. (5) Vacancy condensation was recognized at just ahead of the crack tips of IGSCC and creep crack of cold worked steel. This showed that IGSCC and creep crack growth was controlled by same mechanism. (6) Clear evidence of vacancies condensation was recognized at just beneath the surface before crack initiation. This proved that crack did initiate as the result of diffusion of vacancies in the solid. And the incubation time seems to be controlled by the required time for the condensation of vacancies to the stress concentrated zone. (7) Diffusion of subsituational atoms was also driven by stress gradient. This is the important knowledge to evaluate the SCC initiation after long term operation in LWR's. Based on the observed results, IGSCC initiation and growth mechanism were proposed considering the diffusion process of cold worked induced vacancies. (author)

Synthesis of water soluble photo-initiators of thioxanthone derivatives

International Nuclear Information System (INIS)

Qi Guozhen; Wang Jindi; Lin Yiqing

1999-01-01

Eight new photo-initiators of water-soluble thioxanthone derivatives were prepared. These compounds were identified by IR, NMR, MS and elemental analysis etc. The UV absorption wavelength, molar absorption coefficient and fluorescent quantum yield were determined. Furthermore, the relationship between structure and properties was discussed

Synthesis of water soluble photo-initiators of thioxanthone derivatives

Energy Technology Data Exchange (ETDEWEB)

Guozhen, Qi; Jindi, Wang; Yiqing, Lin [Inst. of Fine Chemicals ECUST, Shanghai (China)

1999-07-01

Eight new photo-initiators of water-soluble thioxanthone derivatives were prepared. These compounds were identified by IR, NMR, MS and elemental analysis etc. The UV absorption wavelength, molar absorption coefficient and fluorescent quantum yield were determined. Furthermore, the relationship between structure and properties was discussed.

MRI measurements of water diffusion: impact of region of interest selection on ischemic quantification

International Nuclear Information System (INIS)

Ozsunar, Yelda; Koseoglu, Kutsi; Huisman, Thierry A.G.M.; Koroshetz, Walter; Sorensen, A. Gregory

2004-01-01

Objective: To investigate the effect of ADC heterogeneity on region of interest (ROI) measurement of isotropic and anisotropic water diffusion in acute (<12 h) cerebral infarctions. Methods and materials: Full diffusion tensor images were retrospectively analyzed in 32 patients with acute cerebral infarction. Fractional anisotropy (FA) and apparent diffusion coefficient (ADC) values were measured in ischemic lesions and in the corresponding contralateral, normal appearing brain by using four ROIs for each patient. The 2x2 pixel square ROIs were placed in the center, the lateral rim and the medial rim of the infarction. In addition, the whole volume of the infarction was measured using a free hand method. Each ROI value obtained from the ischemic lesion was normalized using contralateral normal ROI values. Results: The localization of the ROIs in relation to the ischemic lesion significantly affected ADC measurement (P<0.01, using Friedman test), but not FA measurement (P=0.25). Significant differences were found between ADC values of the center of the infarction versus whole volume (P<0.01), and medial rim versus whole volume of infarction (P<0.001) with variation of relative ADC values up to 11%. The differences of absolute ADC for these groups were 22 and 23%, respectively. The lowest ADC was found in the center, followed by medial rim, lateral rim and whole volume of infarction. Conclusion: ADC quantification may provide variable results depending on ROI method. The ADC and FA values, obtained from the center of infarction tend to be lower compared to the periphery. The researchers who try to compare studies or work on ischemic quantification should be aware of these differences and effects

Dry Juan de Fuca slab revealed by quantification of water entering Cascadia subduction zone

Science.gov (United States)

Canales, J. P.; Carbotte, S. M.; Nedimovic, M. R.; Carton, H. D.

2017-12-01

Water is carried by subducting slabs as a pore fluid and in structurally bound minerals, yet no comprehensive quantification of water content and how it is stored and distributed at depth within incoming plates exists for any segment of the global subduction system. Here we use controlled-source seismic data collected in 2012 as part of the Ridge-to-Trench seismic experiment to quantify the amount of pore and structurally bound water in the Juan de Fuca plate entering the Cascadia subduction zone. We use wide-angle OBS seismic data along a 400-km-long margin-parallel profile 10-15 km seaward from the Cascadia deformation front to obtain P-wave tomography models of the sediments, crust, and uppermost mantle, and effective medium theory combined with a stochastic description of crustal properties (e.g., temperature, alteration assemblages, porosity, pore aspect ratio), to analyze the pore fluid and structurally bound water reservoirs in the sediments, crust and lithospheric mantle, and their variations along the Cascadia margin. Our results demonstrate that the Juan de Fuca lower crust and mantle are much drier than at any other subducting plate, with most of the water stored in the sediments and upper crust. Previously documented, variable but limited bend faulting along the margin, which correlates with degree of plate locking, limits slab access to water, and a warm thermal structure resulting from a thick sediment cover and young plate age prevents significant serpentinization of the mantle. Our results have important implications for a number of subduction processes at Cascadia, such as: (1) the dryness of the lower crust and mantle indicates that fluids that facilitate episodic tremor and slip must be sourced from the subducted upper crust; (2) decompression rather than hydrous melting must dominate arc magmatism in northern-central Cascadia; and (3) dry subducted lower crust and mantle can explain the low levels of intermediate-depth seismicity in the Juan de

Quantification of surface water volume changes in the Mackenzie Delta using satellite multi-mission data

Science.gov (United States)

Normandin, Cassandra; Frappart, Frédéric; Lubac, Bertrand; Bélanger, Simon; Marieu, Vincent; Blarel, Fabien; Robinet, Arthur; Guiastrennec-Faugas, Léa

2018-02-01

Quantification of surface water storage in extensive floodplains and their dynamics are crucial for a better understanding of global hydrological and biogeochemical cycles. In this study, we present estimates of both surface water extent and storage combining multi-mission remotely sensed observations and their temporal evolution over more than 15 years in the Mackenzie Delta. The Mackenzie Delta is located in the northwest of Canada and is the second largest delta in the Arctic Ocean. The delta is frozen from October to May and the recurrent ice break-up provokes an increase in the river's flows. Thus, this phenomenon causes intensive floods along the delta every year, with dramatic environmental impacts. In this study, the dynamics of surface water extent and volume are analysed from 2000 to 2015 by combining multi-satellite information from MODIS multispectral images at 500 m spatial resolution and river stages derived from ERS-2 (1995-2003), ENVISAT (2002-2010) and SARAL (since 2013) altimetry data. The surface water extent (permanent water and flooded area) peaked in June with an area of 9600 km2 (±200 km2) on average, representing approximately 70 % of the delta's total surface. Altimetry-based water levels exhibit annual amplitudes ranging from 4 m in the downstream part to more than 10 m in the upstream part of the Mackenzie Delta. A high overall correlation between the satellite-derived and in situ water heights (R > 0.84) is found for the three altimetry missions. Finally, using altimetry-based water levels and MODIS-derived surface water extents, maps of interpolated water heights over the surface water extents are produced. Results indicate a high variability of the water height magnitude that can reach 10 m compared to the lowest water height in the upstream part of the delta during the flood peak in June. Furthermore, the total surface water volume is estimated and shows an annual variation of approximately 8.5 km3 during the whole study period, with

SCC Initiation Testing of Alloy 600 in High Temperature Water

Science.gov (United States)

Etien, Robert A.; Richey, Edward; Morton, David S.; Eager, Julie

Stress corrosion cracking (SCC) initiation tests have been conducted on Alloy 600 at temperatures from 304 to 367°C. Tests were conducted with in-situ monitored smooth tensile specimens under a constant load in hydrogenated environments. A reversing direct current electric potential drop (EPD) system was used for all of the tests to detect SCC initiation. Tests were conducted to examine the effects of stress (and strain), coolant hydrogen, and temperature on SCC initiation time. The thermal activation energy of SCC initiation was measured as 103 ± 18 kJ/mol in hydrogenated water, which is similar to the thermal activation energy for SCC growth. Results suggest that the fundamental mechanical parameter which controls SCC initiation is plastic strain not stress. SCC initiation was shown to have a different sensitivity than SCC growth to dissolved hydrogen level. Specifically, SCC initiation time appears to be relatively insensitive to hydrogen level in the nickel stability region.

Development of Accident Scenarios and Quantification Methodology for RAON Accelerator

International Nuclear Information System (INIS)

Lee, Yongjin; Jae, Moosung

2014-01-01

The RIsp (Rare Isotope Science Project) plans to provide neutron-rich isotopes (RIs) and stable heavy ion beams. The accelerator is defined as radiation production system according to Nuclear Safety Law. Therefore, it needs strict operate procedures and safety assurance to prevent radiation exposure. In order to satisfy this condition, there is a need for evaluating potential risk of accelerator from the design stage itself. Though some of PSA researches have been conducted for accelerator, most of them focus on not general accident sequence but simple explanation of accident. In this paper, general accident scenarios are developed by Event Tree and deduce new quantification methodology of Event Tree. In this study, some initial events, which may occur in the accelerator, are selected. Using selected initial events, the accident scenarios of accelerator facility are developed with Event Tree. These results can be used as basic data of the accelerator for future risk assessments. After analyzing the probability of each heading, it is possible to conduct quantification and evaluate the significance of the accident result. If there is a development of the accident scenario for external events, risk assessment of entire accelerator facility will be completed. To reduce the uncertainty of the Event Tree, it is possible to produce a reliable data via the presented quantification techniques

Visualization and quantification of weathering effects on capillary water uptake of natural building stones by using neutron imaging

International Nuclear Information System (INIS)

Raneri, Simona; Barone, Germana; Mazzoleni, Paolo; Rabot, Eva

2016-01-01

Building stones are frequently subjected to very intense degradation due to salt crystallization, often responsible for strong modifications of their pore network. These effects have a great influence on the mechanical properties and durability of the materials, and on the penetration of water. Therefore, the quantification and visualization of water absorption into the pore network of degraded stones could provide useful information to better understand the weathering process. In this study, neutron radiography has been used (1) to monitor and visualize in two dimensions the capillary water uptake in a Sicilian calcarenite widely used as building and replace stone (namely Sabucina stone) and (2) to quantify the water content distribution, as a function of time and weathering degree. Additionally, traditional experiments based on gravimetric methods have been performed, following the standard recommendations. Results demonstrated a change in the physical properties of Sabucina stones with the intensification of the degradation process, with severe effects on the capillary imbibition dynamics. The water penetration depth at the end of the experiment was substantially higher in the fresh than in the weathered stones. The water absorption kinetics was faster in the weathered samples, and the amount of water absorbed increased with the number of weathering cycles. Good agreement between classical and neutron imaging data has also been evidenced. However, neutron radiography has allowed retrieving additional spatial information on the water absorption process, and to better understand how salt weathering affects the petrophysical properties of the studied stone and how it influences then the stone response against water. (orig.)

Visualization and quantification of weathering effects on capillary water uptake of natural building stones by using neutron imaging

Energy Technology Data Exchange (ETDEWEB)

Raneri, Simona; Barone, Germana; Mazzoleni, Paolo [University of Catania, Department of Biological, Geological and Environment Sciences, Catania (Italy); Rabot, Eva [Laboratoire Leon Brillouin (CNRS/CEA), Gif-Sur-Yvette (France)

2016-11-15

Building stones are frequently subjected to very intense degradation due to salt crystallization, often responsible for strong modifications of their pore network. These effects have a great influence on the mechanical properties and durability of the materials, and on the penetration of water. Therefore, the quantification and visualization of water absorption into the pore network of degraded stones could provide useful information to better understand the weathering process. In this study, neutron radiography has been used (1) to monitor and visualize in two dimensions the capillary water uptake in a Sicilian calcarenite widely used as building and replace stone (namely Sabucina stone) and (2) to quantify the water content distribution, as a function of time and weathering degree. Additionally, traditional experiments based on gravimetric methods have been performed, following the standard recommendations. Results demonstrated a change in the physical properties of Sabucina stones with the intensification of the degradation process, with severe effects on the capillary imbibition dynamics. The water penetration depth at the end of the experiment was substantially higher in the fresh than in the weathered stones. The water absorption kinetics was faster in the weathered samples, and the amount of water absorbed increased with the number of weathering cycles. Good agreement between classical and neutron imaging data has also been evidenced. However, neutron radiography has allowed retrieving additional spatial information on the water absorption process, and to better understand how salt weathering affects the petrophysical properties of the studied stone and how it influences then the stone response against water. (orig.)

77 FR 73056 - Initial Test Programs for Water-Cooled Nuclear Power Plants

Science.gov (United States)

2012-12-07

... Plants AGENCY: Nuclear Regulatory Commission. ACTION: Draft regulatory guide; request for comment... (DG), DG-1259, ``Initial Test Programs for Water-Cooled Nuclear Power Plants.'' This guide describes... (ITPs) for light water cooled nuclear power plants. DATES: Submit comments by January 31, 2013. Comments...

Prevalence, quantification and typing of adenoviruses detected in river and treated drinking water in South Africa.

Science.gov (United States)

van Heerden, J; Ehlers, M M; Heim, A; Grabow, W O K

2005-01-01

risk of infection constituted by these viruses. The risk of infection may have implications for the management of drinking water quality. This study is unique as it is the first report on the quantification and typing of HAds in treated drinking water and river water. This baseline data is necessary for the meaningful assessment of the potential risk of infection constituted by these viruses.

Method for indirect quantification of CH4 production via H2O production using hydrogenotrophic methanogens

Directory of Open Access Journals (Sweden)

Ruth-Sophie eTaubner

2016-04-01

Full Text Available ydrogenotrophic methanogens are an intriguing group of microorganisms from the domain Archaea. They exhibit extraordinary ecological, biochemical, physiological characteristics colorbox{yellow}{and have a huge biotechnological potential}. Yet, the only possibility to assess the methane (CH$_4$ production potential of hydrogenotrophic methanogens is to apply gas chromatographic quantification of CH$_4$.In order to be able to effectively screen pure cultures of hydrogenotrophic methanogens regarding their CH$_4$ production potential we developed a novel method for indirect quantification of colorbox{yellow}{the} volumetric CH$_4$ production rate by measuring colorbox{yellow}{the} volumetric water production rate. This colorbox{yellow}{ } method was established in serum bottles for cultivation of methanogens in closed batch cultivation mode. Water production was colorbox{yellow}{estimated} by determining the difference in mass increase in an isobaric setting.This novel CH$_4$ quantification method is an accurate and precise analytical technique, colorbox{yellow}{which can be used} to rapidly screen pure cultures of methanogens regarding colorbox{yellow}{their} volumetric CH$_{4}$ evolution rate. colorbox{yellow}{It} is a cost effective alternative colorbox{yellow}{determining} CH$_4$ production of methanogens over CH$_4$ quantification by using gas chromatography, especially if colorbox{yellow}{ } applied as a high throughput quantification method. colorbox{yellow}{Eventually, the} method can be universally applied for quantification of CH$_4$ production from psychrophilic, thermophilic and hyperthermophilic hydrogenotrophic methanogens.

Development of a competitive PCR assay for the quantification of ...

African Journals Online (AJOL)

ONOS

2010-01-25

Jan 25, 2010 ... quantification of total Escherichia coli DNA in water. Omar Kousar Banu, Barnard .... Thereafter the product was ligated into the pGEM®T-easy cloning ... agarose gel using the high pure PCR product purification kit. (Roche® ...

Canine body composition quantification using 3 tesla fat-water MRI.

Science.gov (United States)

Gifford, Aliya; Kullberg, Joel; Berglund, Johan; Malmberg, Filip; Coate, Katie C; Williams, Phillip E; Cherrington, Alan D; Avison, Malcolm J; Welch, E Brian

2014-02-01

To test the hypothesis that a whole-body fat-water MRI (FWMRI) protocol acquired at 3 Tesla combined with semi-automated image analysis techniques enables precise volume and mass quantification of adipose, lean, and bone tissue depots that agree with static scale mass and scale mass changes in the context of a longitudinal study of large-breed dogs placed on an obesogenic high-fat, high-fructose diet. Six healthy adult male dogs were scanned twice, at weeks 0 (baseline) and 4, of the dietary regiment. FWMRI-derived volumes of adipose tissue (total, visceral, and subcutaneous), lean tissue, and cortical bone were quantified using a semi-automated approach. Volumes were converted to masses using published tissue densities. FWMRI-derived total mass corresponds with scale mass with a concordance correlation coefficient of 0.931 (95% confidence interval = [0.813, 0.975]), and slope and intercept values of 1.12 and -2.23 kg, respectively. Visceral, subcutaneous and total adipose tissue masses increased significantly from weeks 0 to 4, while neither cortical bone nor lean tissue masses changed significantly. This is evidenced by a mean percent change of 70.2% for visceral, 67.0% for subcutaneous, and 67.1% for total adipose tissue. FWMRI can precisely quantify and map body composition with respect to adipose, lean, and bone tissue depots. The described approach provides a valuable tool to examine the role of distinct tissue depots in an established animal model of human metabolic disease. Copyright © 2013 Wiley Periodicals, Inc.

Experimental study on isotope fractionation of evaporating water of different initial isotopic composition

International Nuclear Information System (INIS)

Pooja Devi; Jain, A.K.; Rao, M.S.; Kumar, B.

2014-01-01

The studies of evaporative isotopic fractionation in controlled conditions are of particular importance for understanding the mechanism of evaporation fractionation in natural conditions. We present the measurements of the average isotopic fractionation factors during the evaporation of water having different initial isotopic compositions at constant temperature. The results show that the isotopic composition of residual water become more enriched over the time and the initial isotopic composition of evaporating water has considerable effect on the average isotopic fractionation factors. The average isotopic fractionation factors in evaporation of Water A and Water B under the present experimental conditions were found to be 0.9817 ± 0.0044 and 0.9887 ± 0.0031 for oxygen and 0.9178 ± 0.0182 and 0.9437 ± 0.0169 for hydrogen, respectively. The findings of this work should lead to a better understanding and use of stable isotope techniques in isotope hydrology by using a simple technique of evaporation pan. (author)

Data representing two separate LC-MS methods for detection and quantification of water-soluble and fat-soluble vitamins in tears and blood serum

Directory of Open Access Journals (Sweden)

Maryam Khaksari

2017-04-01

Full Text Available Two separate liquid chromatography (LC-mass spectrometry (MS methods were developed for determination and quantification of water-soluble and fat-soluble vitamins in human tear and blood serum samples. The water-soluble vitamin method was originally developed to detect vitamins B1, B2, B3 (nicotinamide, B5, B6 (pyridoxine, B7, B9 and B12 while the fat-soluble vitamin method detected vitamins A, D3, 25(OHD3, E and K1. These methods were then validated with tear and blood serum samples. In this data in brief article, we provide details on the two LC-MS methods development, methods sensitivity, as well as precision and accuracy for determination of vitamins in human tears and blood serum. These methods were then used to determine the vitamin concentrations in infant and parent samples under a clinical study which were reported in "Determination of Water-Soluble and Fat-Soluble Vitamins in Tears and Blood Serum of Infants and Parents by Liquid Chromatography/Mass Spectrometry DOI:10.1016/j.exer.2016.12.007 [1]". This article provides more details on comparison of vitamin concentrations in the samples with the ranges reported in the literature along with the medically accepted normal ranges. The details on concentrations below the limits of detection (LOD and limits of quantification (LOQ are also discussed. Vitamin concentrations were also compared and cross-correlated with clinical data and nutritional information. Significant differences and strongly correlated data were reported in [1]. This article provides comprehensive details on the data with slight differences or slight correlations.

Data representing two separate LC-MS methods for detection and quantification of water-soluble and fat-soluble vitamins in tears and blood serum.

Science.gov (United States)

Khaksari, Maryam; Mazzoleni, Lynn R; Ruan, Chunhai; Kennedy, Robert T; Minerick, Adrienne R

2017-04-01

Two separate liquid chromatography (LC)-mass spectrometry (MS) methods were developed for determination and quantification of water-soluble and fat-soluble vitamins in human tear and blood serum samples. The water-soluble vitamin method was originally developed to detect vitamins B 1 , B 2 , B 3 (nicotinamide), B 5 , B 6 (pyridoxine), B 7 , B 9 and B 12 while the fat-soluble vitamin method detected vitamins A, D 3 , 25(OH)D 3, E and K 1 . These methods were then validated with tear and blood serum samples. In this data in brief article, we provide details on the two LC-MS methods development, methods sensitivity, as well as precision and accuracy for determination of vitamins in human tears and blood serum. These methods were then used to determine the vitamin concentrations in infant and parent samples under a clinical study which were reported in "Determination of Water-Soluble and Fat-Soluble Vitamins in Tears and Blood Serum of Infants and Parents by Liquid Chromatography/Mass Spectrometry DOI:10.1016/j.exer.2016.12.007 [1]". This article provides more details on comparison of vitamin concentrations in the samples with the ranges reported in the literature along with the medically accepted normal ranges. The details on concentrations below the limits of detection (LOD) and limits of quantification (LOQ) are also discussed. Vitamin concentrations were also compared and cross-correlated with clinical data and nutritional information. Significant differences and strongly correlated data were reported in [1]. This article provides comprehensive details on the data with slight differences or slight correlations.

Survey and Evaluate Uncertainty Quantification Methodologies

Energy Technology Data Exchange (ETDEWEB)

Lin, Guang; Engel, David W.; Eslinger, Paul W.

2012-02-01

The Carbon Capture Simulation Initiative (CCSI) is a partnership among national laboratories, industry and academic institutions that will develop and deploy state-of-the-art computational modeling and simulation tools to accelerate the commercialization of carbon capture technologies from discovery to development, demonstration, and ultimately the widespread deployment to hundreds of power plants. The CCSI Toolset will provide end users in industry with a comprehensive, integrated suite of scientifically validated models with uncertainty quantification, optimization, risk analysis and decision making capabilities. The CCSI Toolset will incorporate commercial and open-source software currently in use by industry and will also develop new software tools as necessary to fill technology gaps identified during execution of the project. The CCSI Toolset will (1) enable promising concepts to be more quickly identified through rapid computational screening of devices and processes; (2) reduce the time to design and troubleshoot new devices and processes; (3) quantify the technical risk in taking technology from laboratory-scale to commercial-scale; and (4) stabilize deployment costs more quickly by replacing some of the physical operational tests with virtual power plant simulations. The goal of CCSI is to deliver a toolset that can simulate the scale-up of a broad set of new carbon capture technologies from laboratory scale to full commercial scale. To provide a framework around which the toolset can be developed and demonstrated, we will focus on three Industrial Challenge Problems (ICPs) related to carbon capture technologies relevant to U.S. pulverized coal (PC) power plants. Post combustion capture by solid sorbents is the technology focus of the initial ICP (referred to as ICP A). The goal of the uncertainty quantification (UQ) task (Task 6) is to provide a set of capabilities to the user community for the quantification of uncertainties associated with the carbon

78 FR 63516 - Initial Test Program of Emergency Core Cooling Systems for New Boiling-Water Reactors

Science.gov (United States)

2013-10-24

... NUCLEAR REGULATORY COMMISSION [NRC-2012-0134] Initial Test Program of Emergency Core Cooling....79.1, ``Initial Test Program of Emergency Core Cooling Systems for New Boiling-Water Reactors.'' This... emergency core cooling systems (ECCSs) for boiling- water reactors (BWRs) whose licenses are issued after...

Quantification of myocardial blood flow with {sup 82}Rb positron emission tomography: clinical validation with {sup 15}O-water

Energy Technology Data Exchange (ETDEWEB)

Prior, John O.; Allenbach, Gilles; Bischof Delaloye, Angelika [Centre Hospitalier Universitaire Vaudois and University of Lausanne, Nuclear Medicine Department, Lausanne (Switzerland); Valenta, Ines; Burger, Cyrill [Cardiac Imaging, Department of Radiology, Zurich (Switzerland); Kosinski, Marek [Centre Hospitalier Universitaire Vaudois and University of Lausanne, Nuclear Medicine Department, Lausanne (Switzerland); Centre Hospitalier Universitaire Vaudois and University of Lausanne, University Institute for Radiation Physics, Lausanne (Switzerland); Verdun, Francis R. [Centre Hospitalier Universitaire Vaudois and University of Lausanne, University Institute for Radiation Physics, Lausanne (Switzerland); Kaufmann, Philipp A. [Cardiac Imaging, Department of Radiology, Zurich (Switzerland); University of Zurich, Zurich Centre for Integrative Human Physiology (ZIHP), Zurich (Switzerland)

2012-06-15

Quantification of myocardial blood flow (MBF) with generator-produced {sup 82}Rb is an attractive alternative for centres without an on-site cyclotron. Our aim was to validate {sup 82}Rb-measured MBF in relation to that measured using {sup 15}O-water, as a tracer 100% of which can be extracted from the circulation even at high flow rates, in healthy control subject and patients with mild coronary artery disease (CAD). MBF was measured at rest and during adenosine-induced hyperaemia with {sup 82}Rb and {sup 15}O-water PET in 33 participants (22 control subjects, aged 30 {+-} 13 years; 11 CAD patients without transmural infarction, aged 60 {+-} 13 years). A one-tissue compartment {sup 82}Rb model with ventricular spillover correction was used. The {sup 82}Rb flow-dependent extraction rate was derived from {sup 15}O-water measurements in a subset of 11 control subjects. Myocardial flow reserve (MFR) was defined as the hyperaemic/rest MBF. Pearson's correlation r, Bland-Altman 95% limits of agreement (LoA), and Lin's concordance correlation {rho} {sub c} (measuring both precision and accuracy) were used. Over the entire MBF range (0.66-4.7 ml/min/g), concordance was excellent for MBF (r = 0.90, [{sup 82}Rb-{sup 15}O-water] mean difference {+-} SD = 0.04 {+-} 0.66 ml/min/g, LoA = -1.26 to 1.33 ml/min/g, {rho} {sub c} = 0.88) and MFR (range 1.79-5.81, r = 0.83, mean difference = 0.14 {+-} 0.58, LoA = -0.99 to 1.28, {rho} {sub c} = 0.82). Hyperaemic MBF was reduced in CAD patients compared with the subset of 11 control subjects (2.53 {+-} 0.74 vs. 3.62 {+-} 0.68 ml/min/g, p = 0.002, for {sup 15}O-water; 2.53 {+-} 1.01 vs. 3.82 {+-} 1.21 ml/min/g, p = 0.013, for {sup 82}Rb) and this was paralleled by a lower MFR (2.65 {+-} 0.62 vs. 3.79 {+-} 0.98, p = 0.004, for {sup 15}O-water; 2.85 {+-} 0.91 vs. 3.88 {+-} 0.91, p = 0.012, for {sup 82}Rb). Myocardial perfusion was homogeneous in 1,114 of 1,122 segments (99.3%) and there were no differences in MBF among the

Quantification of the impact of water as an impurity on standard physico-chemical properties of ionic liquids

International Nuclear Information System (INIS)

Andanson, J.-M.; Meng, X.; Traïkia, M.; Husson, P.

2016-01-01

Highlights: • Residual water has a negligible impact on density of hydrophobic ionic liquids. • The density of a dry sample can be calculated from the density of a wet ionic liquid. • The viscosity of a dry sample can be calculated from the one of a wet ionic liquid. • Water can be quantified by NMR spectroscopy even in dried hydrophobic ionic liquids. - Abstract: The objective of this work was to quantify the effect of the presence of water as impurity in ionic liquids. First, density and viscosity of five ionic liquids as well as their aqueous solutions were measured. For hydrophobic dried ionic liquids, traces of water (50 ppm) have measurable impact neither on the density nor on the viscosity values. In the concentration range studied (up to 5000 ppm), a linear evolution of the molar volume of the mixture with the mole fraction composition is observed. Practically, this allows to estimate the density of an neat ionic liquid provided (i) the water quantity and (ii) the density of the undried sample are known. This is particularly useful for hydrophilic ionic liquids that are difficult to dry. In the studied concentration range, a linear evolution of the relative viscosity was also depicted as a function of the mass fraction composition. It is thus possible to evaluate the viscosity of the pure ionic liquid knowing the water quantity and the viscosity of the undried sample. The comparison of the results obtained using two viscosimeters confirms that a Stabinger viscosimeter is appropriate to precisely measure ionic liquids viscosities. Second, NMR and IR spectroscopies were used to characterize the pure ionic liquids and their solutions with water. The sensitivity of IR spectroscopy does allow neither the quantification nor the detection of water below 1 mol%. With NMR spectroscopy, water can be quantified using either the intensity or the chemical shift of the water proton peak for mole fractions as low as 200 ppm. It is even possible to detect water in

StakeMeter: value-based stakeholder identification and quantification framework for value-based software systems.

Science.gov (United States)

Babar, Muhammad Imran; Ghazali, Masitah; Jawawi, Dayang N A; Bin Zaheer, Kashif

2015-01-01

Value-based requirements engineering plays a vital role in the development of value-based software (VBS). Stakeholders are the key players in the requirements engineering process, and the selection of critical stakeholders for the VBS systems is highly desirable. Based on the stakeholder requirements, the innovative or value-based idea is realized. The quality of the VBS system is associated with the concrete set of valuable requirements, and the valuable requirements can only be obtained if all the relevant valuable stakeholders participate in the requirements elicitation phase. The existing value-based approaches focus on the design of the VBS systems. However, the focus on the valuable stakeholders and requirements is inadequate. The current stakeholder identification and quantification (SIQ) approaches are neither state-of-the-art nor systematic for the VBS systems. The existing approaches are time-consuming, complex and inconsistent which makes the initiation process difficult. Moreover, the main motivation of this research is that the existing SIQ approaches do not provide the low level implementation details for SIQ initiation and stakeholder metrics for quantification. Hence, keeping in view the existing SIQ problems, this research contributes in the form of a new SIQ framework called 'StakeMeter'. The StakeMeter framework is verified and validated through case studies. The proposed framework provides low-level implementation guidelines, attributes, metrics, quantification criteria and application procedure as compared to the other methods. The proposed framework solves the issues of stakeholder quantification or prioritization, higher time consumption, complexity, and process initiation. The framework helps in the selection of highly critical stakeholders for the VBS systems with less judgmental error.

StakeMeter: value-based stakeholder identification and quantification framework for value-based software systems.

Directory of Open Access Journals (Sweden)

Muhammad Imran Babar

Full Text Available Value-based requirements engineering plays a vital role in the development of value-based software (VBS. Stakeholders are the key players in the requirements engineering process, and the selection of critical stakeholders for the VBS systems is highly desirable. Based on the stakeholder requirements, the innovative or value-based idea is realized. The quality of the VBS system is associated with the concrete set of valuable requirements, and the valuable requirements can only be obtained if all the relevant valuable stakeholders participate in the requirements elicitation phase. The existing value-based approaches focus on the design of the VBS systems. However, the focus on the valuable stakeholders and requirements is inadequate. The current stakeholder identification and quantification (SIQ approaches are neither state-of-the-art nor systematic for the VBS systems. The existing approaches are time-consuming, complex and inconsistent which makes the initiation process difficult. Moreover, the main motivation of this research is that the existing SIQ approaches do not provide the low level implementation details for SIQ initiation and stakeholder metrics for quantification. Hence, keeping in view the existing SIQ problems, this research contributes in the form of a new SIQ framework called 'StakeMeter'. The StakeMeter framework is verified and validated through case studies. The proposed framework provides low-level implementation guidelines, attributes, metrics, quantification criteria and application procedure as compared to the other methods. The proposed framework solves the issues of stakeholder quantification or prioritization, higher time consumption, complexity, and process initiation. The framework helps in the selection of highly critical stakeholders for the VBS systems with less judgmental error.

StakeMeter: Value-Based Stakeholder Identification and Quantification Framework for Value-Based Software Systems

Science.gov (United States)

Babar, Muhammad Imran; Ghazali, Masitah; Jawawi, Dayang N. A.; Zaheer, Kashif Bin

2015-01-01

Value-based requirements engineering plays a vital role in the development of value-based software (VBS). Stakeholders are the key players in the requirements engineering process, and the selection of critical stakeholders for the VBS systems is highly desirable. Based on the stakeholder requirements, the innovative or value-based idea is realized. The quality of the VBS system is associated with the concrete set of valuable requirements, and the valuable requirements can only be obtained if all the relevant valuable stakeholders participate in the requirements elicitation phase. The existing value-based approaches focus on the design of the VBS systems. However, the focus on the valuable stakeholders and requirements is inadequate. The current stakeholder identification and quantification (SIQ) approaches are neither state-of-the-art nor systematic for the VBS systems. The existing approaches are time-consuming, complex and inconsistent which makes the initiation process difficult. Moreover, the main motivation of this research is that the existing SIQ approaches do not provide the low level implementation details for SIQ initiation and stakeholder metrics for quantification. Hence, keeping in view the existing SIQ problems, this research contributes in the form of a new SIQ framework called ‘StakeMeter’. The StakeMeter framework is verified and validated through case studies. The proposed framework provides low-level implementation guidelines, attributes, metrics, quantification criteria and application procedure as compared to the other methods. The proposed framework solves the issues of stakeholder quantification or prioritization, higher time consumption, complexity, and process initiation. The framework helps in the selection of highly critical stakeholders for the VBS systems with less judgmental error. PMID:25799490

IR Absorption Coefficients for the Quantification of Water in Hydrous Ringwoodite

Science.gov (United States)

Thomas, Sylvia-Monique; Jacobsen, Steven D.; Bina, Craig R.; Smyth, Joseph R.; Frost, Daniel J.

2010-05-01

Raman spectroscopy, combined with the 'Comparator technique' has been developed to determine water contents ranging from a few wt ppm to wt% in glasses and nominally anhydrous minerals including garnets, olivine, and SiO2 polymorphs (Thomas et al. 2009). The routine is one promising example of quantification tools to determine mineral specific molar absorption coefficients (ɛ) for IR spectroscopy. Mineral specific absorption coefficients are required because general IR calibrations do not necessarily apply to minerals with water incorporated as hydroxyl point defects. Here we utilize the 'Comparator technique' to provide ɛ-values for a set of synthetic Fe-free (Fo100) and Fe-bearing (Fo90, Fo87, Fo83, Fo60) ringwoodites, as well as for γ-Mg2GeO4. Ringwoodite is considered one of the major phases of the Earth's lower transition zone (520-660 km depth) and the knowledge of its absolute water storage capacity is essential for modeling the Earth's deep water cycle. Samples were synthesized at variable P-T conditions in a multi-anvil press and cover a range of OH contents. Single-crystals were characterized using X-ray diffraction and IR spectroscopy. Mineral specific IR absorption coefficients were calculated from independently determined water contents from Raman spectroscopy. Unpolarized IR spectra of Mg-ringwoodite show broad absorption features in the OH region with band maxima at ~2350, 2538, 3130, 3172, 3598 and 3688 cm-1. In the spectra of Fe-bearing ringwoodite and γ-Mg2GeO4 the maxima of the main OH band are shifted to 3244 cm-1 (Fo60) and 3207 cm-1, respectively. For Mg-ringwoodite with the mean wavenumber (area-weighted average of the peak position) of 3170 cm-1 an ɛ-value of 191500 ± 38300 L cm-2/ molH2O was determined. For the ringwoodites with Fo90, Fo87 and Fo83 composition and the mean wavenumbers of 3229 cm-1, 3252 cm-1 and 3163 cm-1 values of 123600 ± 24700 L cm-2/ molH2O, 176300 ± 52900 L cm-2/ molH2O and 155000 ± 46500 L cm-2/ molH2O were

The Zugspitze radiative closure experiment for quantifying water vapor absorption over the terrestrial and solar infrared – Part 3: Quantification of the mid- and near-infrared water vapor continuum in the 2500 to 7800 cm−1 spectral range under atmospheric conditions

Directory of Open Access Journals (Sweden)

A. Reichert

2016-09-01

Full Text Available We present a first quantification of the near-infrared (NIR water vapor continuum absorption from an atmospheric radiative closure experiment carried out at the Zugspitze (47.42° N, 10.98° E; 2964 m a.s.l.. Continuum quantification is achieved via radiative closure using radiometrically calibrated solar Fourier transform infrared (FTIR absorption spectra covering the 2500 to 7800 cm−1 spectral range. The dry atmospheric conditions at the Zugspitze site (IWV 1.4 to 3.3 mm enable continuum quantification even within water vapor absorption bands, while upper limits for continuum absorption can be provided in the centers of window regions. Throughout 75 % of the 2500 to 7800 cm−1 spectral range, the Zugspitze results agree within our estimated uncertainty with the widely used MT_CKD 2.5.2 model (Mlawer et al., 2012. In the wings of water vapor absorption bands, our measurements indicate about 2–5 times stronger continuum absorption than MT_CKD, namely in the 2800 to 3000 cm−1 and 4100 to 4200 cm−1 spectral ranges. The measurements are consistent with the laboratory measurements of Mondelain et al. (2015, which rely on cavity ring-down spectroscopy (CDRS, and the calorimetric–interferometric measurements of Bicknell et al. (2006. Compared to the recent FTIR laboratory studies of Ptashnik et al. (2012, 2013, our measurements are consistent within the estimated errors throughout most of the spectral range. However, in the wings of water vapor absorption bands our measurements indicate typically 2–3 times weaker continuum absorption under atmospheric conditions, namely in the 3200 to 3400, 4050 to 4200, and 6950 to 7050 cm−1 spectral regions.

Corrosion fatigue initiation and short crack growth behaviour of austenitic stainless steels under light water reactor conditions

International Nuclear Information System (INIS)

Seifert, H.P.; Ritter, S.; Leber, H.J.

2012-01-01

Highlights: ► Corrosion fatigue in austenitic stainless steels under light water reactor conditions. ► Identification of major parameters of influence on initiation and short crack growth. ► Critical system conditions for environmental reduction of fatigue initiation life. ► Comparison with the environmental factor (F env ) approach. - Abstract: The corrosion fatigue initiation and short crack growth behaviour of different wrought low-carbon and stabilised austenitic stainless steels was characterised under simulated boiling water reactor and pressurised water reactor primary water conditions by cyclic fatigue tests with sharply notched fracture mechanics specimens. The special emphasis was placed to the behaviour at low corrosion potentials and, in particular, to hydrogen water chemistry conditions. The major parameter effects and critical conjoint threshold conditions, which result in relevant environmental reduction and acceleration of fatigue initiation life and subsequent short crack growth, respectively, are discussed and summarised. The observed corrosion fatigue behaviour is compared with the fatigue evaluation procedures in codes and regulatory guidelines.

A study on the initiation of condensation-induced water hammer in a long horizontal pipe

International Nuclear Information System (INIS)

Park, Joo Wan

1992-02-01

Condensation-induced water hammer (CIWH) is the most severe and has the highest frequency among the water hammer events occurred in nuclear power plants. Among mechanisms associated with this type of water hammer, the steam and water countercurrent flow in a horizontal pipe is known as the dominant mechanism in Pressurized Water Reactors. The CIWH due to steam-water counter-flow in a long horizontal pipe has been analytically investigated with emphasis on the effect of pipe length, in order to identify the conditions necessary to initiate a water hammer and to provide stability maps describing the zone of water hammer to be avoided with the combination of filling water flowrate and pipe length. Analytical models which can be used to predict the limiting boundaries, upper and lower one, of CIWH initiation have been developed and the calculation results have been compared with the data of an actual incident occurred previously in a nuclear power plant. From the approach used in this study, boundary estimates including simple relationships between critical inlet water flowrates and pipe length-to-diameter on the CIWH initiation in a long horizontal pipe could be made, and several corrective actions to prevent water hammer recurrence could be taken. However, because of the limited understanding of the direct-contact condensation phenomena in the typical range of nuclear power plant operation, it is likely that the overall uncertainty of the analysis results will be high. Therefore, further research on this area including scaling analysis is required

Effects of humic substances on fluorometric DNA quantification and DNA hybridization

NARCIS (Netherlands)

Bachoon, DS; Otero, E; Hodson, RE

2001-01-01

DNA extracts from sediment and water samples are often contaminated with coextracted humic-like impurities, Estuarine humic substances and vascular plant extract were used to evaluate the effect of the presence of such impurities on DNA hybridization and quantification. The presence of humic

Real-time three-dimensional color doppler evaluation of the flow convergence zone for quantification of mitral regurgitation: Validation experimental animal study and initial clinical experience

Science.gov (United States)

Sitges, Marta; Jones, Michael; Shiota, Takahiro; Qin, Jian Xin; Tsujino, Hiroyuki; Bauer, Fabrice; Kim, Yong Jin; Agler, Deborah A.; Cardon, Lisa A.; Zetts, Arthur D.;

Abdominal adipose tissue quantification on water-suppressed and non-water-suppressed MRI at 3T using semi-automated FCM clustering algorithm

Science.gov (United States)

Valaparla, Sunil K.; Peng, Qi; Gao, Feng; Clarke, Geoffrey D.

2014-03-01

Accurate measurements of human body fat distribution are desirable because excessive body fat is associated with impaired insulin sensitivity, type 2 diabetes mellitus (T2DM) and cardiovascular disease. In this study, we hypothesized that the performance of water suppressed (WS) MRI is superior to non-water suppressed (NWS) MRI for volumetric assessment of abdominal subcutaneous (SAT), intramuscular (IMAT), visceral (VAT), and total (TAT) adipose tissues. We acquired T1-weighted images on a 3T MRI system (TIM Trio, Siemens), which was analyzed using semi-automated segmentation software that employs a fuzzy c-means (FCM) clustering algorithm. Sixteen contiguous axial slices, centered at the L4-L5 level of the abdomen, were acquired in eight T2DM subjects with water suppression (WS) and without (NWS). Histograms from WS images show improved separation of non-fatty tissue pixels from fatty tissue pixels, compared to NWS images. Paired t-tests of WS versus NWS showed a statistically significant lower volume of lipid in the WS images for VAT (145.3 cc less, p=0.006) and IMAT (305 cc less, p1), but not SAT (14.1 cc more, NS). WS measurements of TAT also resulted in lower fat volumes (436.1 cc less, p=0.002). There is strong correlation between WS and NWS quantification methods for SAT measurements (r=0.999), but poorer correlation for VAT studies (r=0.845). These results suggest that NWS pulse sequences may overestimate adipose tissue volumes and that WS pulse sequences are more desirable due to the higher contrast generated between fatty and non-fatty tissues.

77 FR 36014 - Initial Test Program of Emergency Core Cooling Systems for Boiling-Water Reactors

Science.gov (United States)

2012-06-15

... NUCLEAR REGULATORY COMMISSION [NRC-2012-0134] Initial Test Program of Emergency Core Cooling... for public comment draft regulatory guide (DG), DG-1277, ``Initial Test Program of Emergency Core..., entitled, ``Initial Test Program of Emergency Core Cooling Systems for Boiling-Water Reactors,'' is...

Quantification of Water Flux in Vesicular Systems.

Science.gov (United States)

Hannesschläger, Christof; Barta, Thomas; Siligan, Christine; Horner, Andreas

2018-06-04

Water transport across lipid membranes is fundamental to all forms of life and plays a major role in health and disease. However, not only typical water facilitators like aquaporins facilitate water flux, but also transporters, ion channels or receptors represent potent water pathways. The efforts directed towards a mechanistic understanding of water conductivity determinants in transmembrane proteins, the development of water flow inhibitors, and the creation of biomimetic membranes with incorporated membrane proteins or artificial water channels depend on reliable and accurate ways of quantifying water permeabilities P f . A conventional method is to subject vesicles to an osmotic gradient in a stopped-flow device: Fast recordings of scattered light intensity are converted into the time course of vesicle volume change. Even though an analytical solution accurately acquiring P f from scattered light intensities exists, approximations potentially misjudging P f by orders of magnitude are used. By means of computational and experimental data we point out that erroneous results such as that the single channel water permeability p f depends on the osmotic gradient are direct results of such approximations. Finally, we propose an empirical solution of which calculated permeability values closely match those calculated with the analytical solution in the relevant range of parameters.

Critical discharge of initially subcooled water through slits

International Nuclear Information System (INIS)

Amos, C.N.; Schrock, V.E.

1983-09-01

This report describes an experimental investigation into the critical flow of initially subcooled water through rectangular slits. The study of such flows is relevant to the prediction of leak flow rates from cracks in piping, or pressure vessels, which contain sufficient enthalpy that vaporization will occur if they are allowed to expand to the ambient pressure. Two new analytical models, which allow for the generation of a metastable liquid phase, are developed. Experimental results are compared with the predictions of both these new models and with a Fanno Homogeneous Equilibrium Model

Level 2 probabilistic event analyses and quantification

International Nuclear Information System (INIS)

Boneham, P.

2003-01-01

In this paper an example of quantification of a severe accident phenomenological event is given. The performed analysis for assessment of the probability that the debris released from the reactor vessel was in a coolable configuration in the lower drywell is presented. It is also analysed the assessment of the type of core/concrete attack that would occur. The coolability of the debris ex-vessel evaluation by an event in the Simplified Boiling Water Reactor (SBWR) Containment Event Tree (CET) and a detailed Decomposition Event Tree (DET) developed to aid in the quantification of this CET event are considered. The headings in the DET selected to represent plant physical states (e.g., reactor vessel pressure at the time of vessel failure) and the uncertainties associated with the occurrence of critical physical phenomena (e.g., debris configuration in the lower drywell) considered important to assessing whether the debris was coolable or not coolable ex-vessel are also discussed

National Enforcement Initiative: Preventing Animal Waste from Contaminating Surface and Ground Water

Science.gov (United States)

This page describes EPA's goal in preventing animal waste from contaminating surface and ground Water. It is an EPA National Enforcement Initiative. Both enforcement cases, and a map of enforcement actions are provided.

Analytical assessment about the simultaneous quantification of releasable pharmaceutical relevant inorganic nanoparticles in tap water and domestic waste water.

Science.gov (United States)

Krystek, Petra; Bäuerlein, Patrick S; Kooij, Pascal J F

2015-03-15

For pharmaceutical applications, the use of inorganic engineered nanoparticles is of growing interest while silver (Ag) and gold (Au) are the most relevant elements. A few methods were developed recently but the validation and the application testing were quite limited. Therefore, a routinely suitable multi element method for the identification of nanoparticles of different sizes below 100 nm and elemental composition by applying asymmetric flow field flow fraction (AF4) - inductively coupled plasma mass spectrometry (ICPMS) is developed. A complete validation model of the quantification of releasable pharmaceutical relevant inorganic nanoparticles based on Ag and Au is presented for the most relevant aqueous matrices of tap water and domestic waste water. The samples are originated from locations in the Netherlands and it is of great interest to study the unwanted presence of Ag and Au as nanoparticle residues due to possible health and environmental risks. During method development, instability effects are observed for 60 nm and 70 nm Ag ENPs with different capping agents. These effects are studied more closely in relation to matrix effects. Besides the methodological aspects, the obtained analytical results and relevant performance characteristics (e.g. measuring range, limit of detection, repeatability, reproducibility, trueness, and expanded uncertainty of measurement) are determined and discussed. For the chosen aqueous matrices, the results of the performance characteristics are significantly better for Au ENPs in comparison to Ag ENPs; e.g. repeatability and reproducibility are below 10% for all Au ENPs respectively maximal 27% repeatability for larger Ag ENPs. The method is a promising tool for the simultaneous determination of releasable pharmaceutical relevant inorganic nanoparticles. Copyright © 2014 Elsevier B.V. All rights reserved.

SCC of cold-worked austenitic stainless steels exposed to PWR primary water conditions: susceptibility to initiation

International Nuclear Information System (INIS)

Herms, E.; Raquet, O.; Sejourne, L.; Vaillant, F.

2009-01-01

Heavily cold-worked austenitic stainless steels (AISI 304L and 316L types) could be significantly susceptible to Stress Corrosion Cracking (SCC) when exposed to PWR nominal primary water conditions even in absence of any pollutants. Susceptibility to SCC was shown to be related with some conditions such as initial hardness, procedure of cold-work or dynamic straining. A dedicated program devoted to better understand the initiation stage on CW austenitic stainless steels in PWR water is presented. Initiation is studied thanks to SCC test conditions leading to an intergranular cracking propagation mode on a CW austenitic stainless steel which is the mode generally reported after field experience. SCC tests are carried out in typical primary water conditions (composition 1000 ppm B and 2 ppm Li) and for temperature in the range 290 - 340 C. Material selected is 316L cold-worked essentially by rolling (reduction in thickness of 40%). Initiation tests are carried out under various stress levels with the aim to investigate the evolution of the initiation period versus the value of applied stress. SCC tests are performed on cylindrical notched specimens in order to increase the applied stress and allow accelerated testing without modify the exposure conditions to strictly nominal hydrogenated PWR water. Respective influences of cyclic/dynamic conditions on SCC initiation are presented and discussed. Dedicated interrupted tests help to investigate the behaviour of the crack initiation process. These SCC tests have shown that crack initiation could be obtained after a very short time under dynamic loading conditions on heavily pre-strained austenitic stainless steels. Actual results show that the most limiting stage of the cracking process on CW 316L seems to be the transition from slow transgranular propagation of surface initiated cracks to intergranular fast propagation through the thickness of the sample. The duration of this stage during crack initiation tests is

Single Picture Integration for Territorial Water Surveillance (SPITS): An initiative to improve situational awareness in littoral waters

NARCIS (Netherlands)

Theil, A.; Huizing, A.; Heijningen, A.W.P.

2006-01-01

Single Picture Integration for Territorial Water Surveillance (SPITS) is an initiative conducted by TNO Defence, Security and Safety in which techniques to enhance the quality of the maritime surface picture are considered. Observing the environment with a suite of dissimilar sensors is considered

Development of an Ion-Pairing Reagent and HPLC-UV Method for the Detection and Quantification of Six Water-Soluble Vitamins in Animal Feed.

Science.gov (United States)

Kim, Ho Jin

2016-01-01

A novel and simple method for detecting six water-soluble vitamins in animal feed using high performance liquid chromatography equipped with a photodiode array detector (HPLC/PDA) and ion-pairing reagent was developed. The chromatographic peaks of the six water-soluble vitamins were successfully identified by comparing their retention times and UV spectra with reference standards. The mobile phase was composed of buffers A (5 mM PICB-6 in 0.1% CH3COOH) and B (5 mM PICB-6 in 65% methanol). All peaks were detected using a wavelength of 270 nm. Method validation was performed in terms of linearity, sensitivity, selectivity, accuracy, and precision. The limits of detection (LODs) for the instrument employed in these experiments ranged from 25 to 197 μg/kg, and the limits of quantification (LOQs) ranged from 84 to 658 μg/kg. Average recoveries of the six water-soluble vitamins ranged from 82.3% to 98.9%. Method replication resulted in intraday and interday peak area variation of water-soluble vitamins in animal feed.

Quantification of acrylamide in foods selected by using gas chromatography tandem mass spectrometry

Directory of Open Access Journals (Sweden)

Delević Veselin M.

2016-01-01

Full Text Available Acrylamide is toxic and probably carcinogenic compound, made as a result of high-temperature thermal treatment of carbohydrate-rich foodstuffs. In this article a method is improved for the extraction and quantitation of acrylamide in foods produced based on corn flour that are represented in our traditional diet. Acrylamide extraction was carried out using reduced volume of saturated solution of bromine water and the GC - MS method for the quantification was shown. Quantification of acrylamide was preceded by: sample homogenization, acrylamide extraction using water, extract purification using solid phase extraction, bromination, using a reduced volume of bromine water solution, dehydrobromination with sodium thiosulfate and transformation of dibromopropenamide in 2,3- 2- bromopropenamide using triethylamine. Regression and correlation analysis were applied for the probability level of 0.05. Calibration is performed in the concentration range 5-80 ug/kg with a detection limit 6.86 mg / kg and the limits of quantification 10.78 ug/kg and the coefficient of determination R2 > 0.999. Calibration curve was obtained: y = 0,069x + 0,038. Recovery values were an average from 97 to 110%. Proposed GC-MS method is simple, precise and reliable for the determination of acrylamide in the samples of thermal treated foods. Our results show that the tested foods quantify the presence of acrylamide in concentrations of 18 to 77 mg/kg acrylamide depending on whether the food was prepared by cooking or baking.

Quantification of rice bran oil in oil blends

Energy Technology Data Exchange (ETDEWEB)

Mishra, R.; Sharma, H. K.; Sengar, G.

2012-11-01

Blends consisting of physically refined rice bran oil (PRBO): sunflower oil (SnF) and PRBO: safflower oil (SAF) in different proportions were analyzed for various physicochemical parameters. The quantification of pure rice bran oil in the blended oils was carried out using different methods including gas chromatographic, HPLC, ultrasonic velocity and methods based on physico-chemical parameters. The physicochemical parameters such as ultrasonic velocity, relative association and acoustic impedance at 2 MHz, iodine value, palmitic acid content and oryzanol content reflected significant changes with increased proportions of PRBO in the blended oils. These parameters were selected as dependent parameters and % PRBO proportion was selected as independent parameters. The study revealed that regression equations based on the oryzanol content, palmitic acid composition, ultrasonic velocity, relative association, acoustic impedance, and iodine value can be used for the quantification of rice bran oil in blended oils. The rice bran oil can easily be quantified in the blended oils based on the oryzanol content by HPLC even at a 1% level. The palmitic acid content in blended oils can also be used as an indicator to quantify rice bran oil at or above the 20% level in blended oils whereas the method based on ultrasonic velocity, acoustic impedance and relative association showed initial promise in the quantification of rice bran oil. (Author) 23 refs.

Comparison of machine learning and semi-quantification algorithms for (I123)FP-CIT classification: the beginning of the end for semi-quantification?

Science.gov (United States)

Taylor, Jonathan Christopher; Fenner, John Wesley

2017-11-29

Semi-quantification methods are well established in the clinic for assisted reporting of (I123) Ioflupane images. Arguably, these are limited diagnostic tools. Recent research has demonstrated the potential for improved classification performance offered by machine learning algorithms. A direct comparison between methods is required to establish whether a move towards widespread clinical adoption of machine learning algorithms is justified. This study compared three machine learning algorithms with that of a range of semi-quantification methods, using the Parkinson's Progression Markers Initiative (PPMI) research database and a locally derived clinical database for validation. Machine learning algorithms were based on support vector machine classifiers with three different sets of features: Voxel intensities Principal components of image voxel intensities Striatal binding radios from the putamen and caudate. Semi-quantification methods were based on striatal binding ratios (SBRs) from both putamina, with and without consideration of the caudates. Normal limits for the SBRs were defined through four different methods: Minimum of age-matched controls Mean minus 1/1.5/2 standard deviations from age-matched controls Linear regression of normal patient data against age (minus 1/1.5/2 standard errors) Selection of the optimum operating point on the receiver operator characteristic curve from normal and abnormal training data Each machine learning and semi-quantification technique was evaluated with stratified, nested 10-fold cross-validation, repeated 10 times. The mean accuracy of the semi-quantitative methods for classification of local data into Parkinsonian and non-Parkinsonian groups varied from 0.78 to 0.87, contrasting with 0.89 to 0.95 for classifying PPMI data into healthy controls and Parkinson's disease groups. The machine learning algorithms gave mean accuracies between 0.88 to 0.92 and 0.95 to 0.97 for local and PPMI data respectively. Classification

Multiple cracks initiation and propagation behavior of stainless steel in high temperature water environment

International Nuclear Information System (INIS)

Kamaya, Masayuki; Chiba, Goro; Nakajima, Nobuo; Totsuka, Nobuo

2001-01-01

Environmentally assisted crack initiation behavior is greatly affected by applied stress and environmental factors, such as water temperature, contained impurities and so on. On the other hand, crack initiation behavior also influences crack propagation. A typical example of this influence can be observed as the interference effects of multiple cracks, such as the coalescence of approaching crack tips or the arrest phenomena in the relaxation zone of an adjacent crack. To understand these effects of crack initiation on crack propagation behavior is very important to predict the lifetime of components, in which quite a few cracks tend to occur. This study aimed at revealing the crack initiation behavior and the influence of this behavior on propagation. At first, to evaluate the effect of applied stress on crack initiation behavior, sensitized stainless steel was subjected to a four-point bending test in a high temperature water environment at the constant potentials of ECP +50 mV and ECP +150 mV. Secondly, a crack initiation and growth simulation model was developed, in which the interference effect of multiple cracks is evaluated by the finite element method, based on the experimental results. Using this model, the relationship between crack initiation and propagation was studied. From the model, it was revealed that the increasing number of the cracks accelerates crack propagation and reduces life. (author)

Initiation and propagation of multiple cracks of stainless steel in high temperature water environment

Energy Technology Data Exchange (ETDEWEB)

Kamaya, Masayuki; Chiba, Goro; Nakajima, Nobuo; Totsuka, Nobuo [Institute of Nuclear Safety System Inc., Mihama, Fukui (Japan)

2001-09-01

Environmentally assisted crack initiation behavior is greatly affected by applied stress and environmental factors, such as water temperature, contained impurities and so on. Crack initiation behavior also influences crack propagation. A typical example of this influence can be observed as the interference effects of multiple cracks, such as the coalescence of approaching crack tips or the arrest phenomena in the relaxation zone of an adjacent crack. To understand these effects of crack initiation on crack propagation behavior is very important to predict the lifetime of components, in which relatively large number of cracks tend to occur. This study aimed at revealing the crack initiation behavior and the influence of this behavior on propagation. At first, to evaluate the effect of applied stress on crack initiation behavior, sensitized stainless steel was subjected to a four-point bending test in high temperature water environment at the constant potentials of +50 mV SHE and +150 mV SHE Secondly, a crack initiation and growth simulation model was developed, in which the interference effect of multiple cracks is evaluated by the finite element method, based on the experimental results. Using this model, the relationship between crack initiation and propagation was investigated, and it was revealed that the increasing number of the cracks accelerates crack propagation and reduces life. (author)

Development of a MELCOR self-initialization algorithm for boiling water reactors

International Nuclear Information System (INIS)

Chien, C.S.; Wang, S.J.; Cheng, S.K.

1996-01-01

The MELCOR code, developed by Sandia National Laboratories, is suitable for calculating source terms and simulating severe accident phenomena of nuclear power plants. Prior to simulating a severe accident transient with MELCOR, the initial steady-state conditions must be generated in advance. The current MELCOR users' manuals do not provide a self-initialization procedure; this is the reason users have to adjust the initial conditions by themselves through a trial-and-error approach. A MELCOR self-initialization algorithm for boiling water reactor plants has been developed, which eliminates the tedious trial-and-error procedures and improves the simulation accuracy. This algorithm adjusts the important plant variable such as the dome pressure, downcomer level, and core flow rate to the desired conditions automatically. It is implemented through input with control functions provided in MELCOR. The reactor power and feedwater temperature are fed as input data. The initialization work of full-power conditions of the Kuosheng nuclear power station is cited as an example. These initial conditions are generated successfully with the developed algorithm. The generated initial conditions can be stored in a restart file and used for transient analysis. The methodology in this study improves the accuracy and consistency of transient calculations. Meanwhile, the algorithm provides all MELCOR users an easy and correct method for establishing the initial conditions

Oxidization and stress corrosion cracking initiation of austenitic alloys in supercritical water

International Nuclear Information System (INIS)

Behnamian, Y.; Li, M.; Luo, J.L.; Chen, W.X.; Zheng, W.; Guzonas, D.A.

2012-01-01

This study determined the stress corrosion cracking behaviour of austenitic alloys in pure supercritical water. Austenitic stainless steels 310S, 316L, and Inconel 625 were tested as static capsule samples at 500 o C for up to 5000 h. After that period, crack initiations were readily observed in all samples, signifying susceptibility to stress corrosion cracking. The microcracks in 316L stainless steel and Inconel 625 were almost intergranular, whereas transgranular microcrack initiation was observed in 310S stainless steel. (author)

Oxidization and stress corrosion cracking initiation of austenitic alloys in supercritical water

Energy Technology Data Exchange (ETDEWEB)

Behnamian, Y.; Li, M.; Luo, J.L.; Chen, W.X. [Univ. of Alberta, Dept. of Chemical and Materials Engineering, Edmonton, Alberta (Canada); Zheng, W. [Materials Technology Laboratory, NRCan, Ottawa, Ontario (Canada); Guzonas, D.A. [Atomic Energy of Canada Limited, Chalk River, Ontario (Canada)

2012-07-01

This study determined the stress corrosion cracking behaviour of austenitic alloys in pure supercritical water. Austenitic stainless steels 310S, 316L, and Inconel 625 were tested as static capsule samples at 500{sup o}C for up to 5000 h. After that period, crack initiations were readily observed in all samples, signifying susceptibility to stress corrosion cracking. The microcracks in 316L stainless steel and Inconel 625 were almost intergranular, whereas transgranular microcrack initiation was observed in 310S stainless steel. (author)

Liquid chromatography with diode array detection and multivariate curve resolution for the selective and sensitive quantification of estrogens in natural waters.

Science.gov (United States)

Pérez, Rocío L; Escandar, Graciela M

2014-07-04

Following the green analytical chemistry principles, an efficient strategy involving second-order data provided by liquid chromatography (LC) with diode array detection (DAD) was applied for the simultaneous determination of estriol, 17β-estradiol, 17α-ethinylestradiol and estrone in natural water samples. After a simple pre-concentration step, LC-DAD matrix data were rapidly obtained (in less than 5 min) with a chromatographic system operating isocratically. Applying a second-order calibration algorithm based on multivariate curve resolution with alternating least-squares (MCR-ALS), successful resolution was achieved in the presence of sample constituents that strongly coelute with the analytes. The flexibility of this multivariate model allowed the quantification of the four estrogens in tap, mineral, underground and river water samples. Limits of detection in the range between 3 and 13 ng L(-1), and relative prediction errors from 2 to 11% were achieved. Copyright © 2014 Elsevier B.V. All rights reserved.

Quantification in emission tomography

International Nuclear Information System (INIS)

Buvat, Irene

2011-11-01

The objective of this lecture is to understand the possibilities and limitations of the quantitative analysis of single photon emission computed tomography (SPECT) and positron emission tomography (PET) images. It is also to identify the conditions to be fulfilled to obtain reliable quantitative measurements from images. Content: 1 - Introduction: Quantification in emission tomography - definition and challenges; quantification biasing phenomena 2 - Main problems impacting quantification in PET and SPECT: problems, consequences, correction methods, results (Attenuation, scattering, partial volume effect, movement, un-stationary spatial resolution in SPECT, fortuitous coincidences in PET, standardisation in PET); 3 - Synthesis: accessible efficiency, know-how, Precautions, beyond the activity measurement

Breast density quantification with cone-beam CT: a post-mortem study

International Nuclear Information System (INIS)

Johnson, Travis; Ding, Huanjun; Le, Huy Q; Ducote, Justin L; Molloi, Sabee

2013-01-01

Forty post-mortem breasts were imaged with a flat-panel based cone-beam x-ray CT system at 50 kVp. The feasibility of breast density quantification has been investigated using standard histogram thresholding and an automatic segmentation method based on the fuzzy c-means algorithm (FCM). The breasts were chemically decomposed into water, lipid, and protein immediately after image acquisition was completed. The per cent fibroglandular volume (%FGV) from chemical analysis was used as the gold standard for breast density comparison. Both image-based segmentation techniques showed good precision in breast density quantification with high linear coefficients between the right and left breast of each pair. When comparing with the gold standard using %FGV from chemical analysis, Pearson's r-values were estimated to be 0.983 and 0.968 for the FCM clustering and the histogram thresholding techniques, respectively. The standard error of the estimate was also reduced from 3.92% to 2.45% by applying the automatic clustering technique. The results of the postmortem study suggested that breast tissue can be characterized in terms of water, lipid and protein contents with high accuracy by using chemical analysis, which offers a gold standard for breast density studies comparing different techniques. In the investigated image segmentation techniques, the FCM algorithm had high precision and accuracy in breast density quantification. In comparison to conventional histogram thresholding, it was more efficient and reduced inter-observer variation. (paper)

A new approach for evaluating water hammer including the initial state of pressurization of the installation and fluid

Directory of Open Access Journals (Sweden)

G. Kaless

2016-04-01

Full Text Available The water hammer phenomenon is well known since the 19th century, while its mathematical formulation, by means of differential equations, is due to works of researchers such us Allievi (1903 and others from the beginning of the 20th century. The equations found in the technical publications produce a strange water hammer when the initial condition is defined assuming an incompressible fluid and a rigid pipe. The correct solution requires solving the water hammer equations for the initial state. When the finite difference method is applied, the initial state is solved by means of a set of non-linear equations. A novel approach is proposed including the initial state of pressurization into the governing equations and hence simplifying the calculus of the initial conditions. Furthermore, a critical reading of the deduction of the equations is done pointing out conceptual inconsistencies and proposing corrections.

Effect of Residual Strain on PWSCC Initiation of Alloy 690 in Primary Water of PWR

International Nuclear Information System (INIS)

Lee, Eun-Hee; Kim, Sung-Woo; Eom, Ki-Hyeon; Hwang, Seong-Sik

2016-01-01

The object of this study is to attempt to correlate the susceptibility to crack initiation of Alloy 690 with the levels of cold work in simulated primary water. Experiments were conducted in high-temperature water to accelerate the cracking behavior and to determine the severity of crack initiation as a function of level of cold work for Alloy 690. Cracking susceptibility was determined by measuring the crack length per unit area and crack density. SCC initiation susceptibility of Alloy 690 increased with increase of the residual strain induced by the prior cold-rolling process. The 20% cold-rolled specimen exhibited mostly IG cracks, while the 30% and 40% cold-rolled specimens revealed significant amounts of IG and TG cracks. Most cracks were observed near the smallest cross-section area of the tapered specimen, where the maximum stress was applied, indicating that the SCC initiation susceptibility was strongly dependent on the applied stress. In order to find the correlation between SCC initiation susceptibility and residual strain induced by cold work, more analyses need to be performed in terms of the crack length per unit area and the crack density, as a strong indicative for SCC initiation susceptibility

Social benefits in the Working for Water programme as a public works initiative

CSIR Research Space (South Africa)

Magadlela, D

2004-01-01

Full Text Available The Working for Water programme is a pioneering environmental conservation initiative in that its implementation successfully combines ecological concerns and social development benefits. By addressing unemployment, skills training and empowerment...

Construction and Quantification of the One Top model of the Fire Events PSA

International Nuclear Information System (INIS)

Kang, Dae Il; Lee, Yoon Hwan; Han, Sang Hoon

2008-01-01

KAERI constructed the one top model of the fire events PSA for Ulchin Unit 3 and 4 by using the 'mapping technique'. The mapping technique was developed for the construction and quantification of external events PSA models with a one top model for an internal events PSA. With 'AIMS', the mapping technique can be implemented by the construction of mapping tables. The mapping tables include fire rooms, fire ignition frequency, related initiating events, fire transfer events, and the internal PSA basic events affected by a fire. The constructed one top fire PSA model is based on previously conducted fire PSA results for Ulchin Unit 3 and 4. In this paper, we introduce the construction procedure and quantification results of the one top model of the fire events PSA by using the mapping technique. As the one top model of the fire events PSA developed in this study is based on the previous study, we also introduce the previous fire PSA approach focused on quantification

Uncertainty quantification and sensitivity analysis with CASL Core Simulator VERA-CS

International Nuclear Information System (INIS)

Brown, C.S.; Zhang, Hongbin

2016-01-01

VERA-CS (Virtual Environment for Reactor Applications, Core Simulator) is a coupled neutron transport and thermal-hydraulics code under development by the Consortium for Advanced Simulation of Light Water Reactors (CASL). An approach to uncertainty quantification and sensitivity analysis with VERA-CS was developed and a new toolkit was created to perform uncertainty quantification and sensitivity analysis. A 2 × 2 fuel assembly model was developed and simulated by VERA-CS, and uncertainty quantification and sensitivity analysis were performed with fourteen uncertain input parameters. The minimum departure from nucleate boiling ratio (MDNBR), maximum fuel center-line temperature, and maximum outer clad surface temperature were chosen as the selected figures of merit. Pearson, Spearman, and partial correlation coefficients were considered for all of the figures of merit in sensitivity analysis and coolant inlet temperature was consistently the most influential parameter. Parameters used as inputs to the critical heat flux calculation with the W-3 correlation were shown to be the most influential on the MDNBR, maximum fuel center-line temperature, and maximum outer clad surface temperature.

Advances in forensic DNA quantification: a review.

Science.gov (United States)

Lee, Steven B; McCord, Bruce; Buel, Eric

2014-11-01

This review focuses upon a critical step in forensic biology: detection and quantification of human DNA from biological samples. Determination of the quantity and quality of human DNA extracted from biological evidence is important for several reasons. Firstly, depending on the source and extraction method, the quality (purity and length), and quantity of the resultant DNA extract can vary greatly. This affects the downstream method as the quantity of input DNA and its relative length can determine which genotyping procedure to use-standard short-tandem repeat (STR) typing, mini-STR typing or mitochondrial DNA sequencing. Secondly, because it is important in forensic analysis to preserve as much of the evidence as possible for retesting, it is important to determine the total DNA amount available prior to utilizing any destructive analytical method. Lastly, results from initial quantitative and qualitative evaluations permit a more informed interpretation of downstream analytical results. Newer quantitative techniques involving real-time PCR can reveal the presence of degraded DNA and PCR inhibitors, that provide potential reasons for poor genotyping results and may indicate methods to use for downstream typing success. In general, the more information available, the easier it is to interpret and process the sample resulting in a higher likelihood of successful DNA typing. The history of the development of quantitative methods has involved two main goals-improving precision of the analysis and increasing the information content of the result. This review covers advances in forensic DNA quantification methods and recent developments in RNA quantification. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Quantification of diagnostic biomarkers to detect multiple sclerosis lesions employing 1H-MRSI at 3T

International Nuclear Information System (INIS)

Vafaeyan, H.; Ebrahimzadeh, S.A.; Rahimian, N.; Harirchian, M.H.; Alavijeh, S. Karimi; Rad, H. Saligheh; Madadi, A.; Faeghi, F.

2015-01-01

Proton magnetic resonance spectroscopic imaging ( 1 H-MRSI) enables the quantification of metabolite concentration ratios in the brain. The major purpose of the current work is to characterize NAA/Cho, NAA/Cr and Myo/Cr in multiple sclerosis (MS) patients, and to estimate their reproducibility in healthy controls. Twelve MS patients and five healthy volunteers were imaged using 1 H-MRSI at 3T. Eddy current correction was performed using a single-voxel non-water suppressed acquisition on an external water phantom. Time-domain quantification was carried out using subtract-QUEST technique, and based on an optimal simulated metabolite database. Reproducibility was evaluated on the same quantified ratios in five normal subjects. An optimal database was created for the quantification of the MRSI data, consisting of choline (Cho), creatine (Cr), N-acetyl aspartate (NAA), lactate (Lac), lipids, myo-inositol (Myo) and glutamine + glutamate (Glx). Decreasing of NAA/Cr and NAA/Cho ratios, as well as an increase in Myo/Cr ratio were observed for MS patients in comparison with control group. Reproducibility of NAA/Cr, NAA/Cho and Myo/Cr in control group was 0.98, 0.87 and 0.64, respectively, expressed as the squared correlation coefficient R 2 between duplicate experiments. We showed that MRSI alongside the time-domain quantification of spectral ratios offers a sensitive and reproducible framework to differentiate MS patients from normals.

Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR.

Science.gov (United States)

Furet, Jean-Pierre; Quénée, Pascal; Tailliez, Patrick

2004-12-15

Real-time quantitative PCR assays were developed for the absolute quantification of lactic acid bacteria (LAB) (Streptococcus thermophilus, Lactobacillus delbrueckii, L. casei, L. paracasei, L. rhamnosus, L. acidophilus and L. johnsonii) in fermented milk products. The results of molecular quantification and classic bacterial enumeration did not differ significantly with respect to S. thermophilus and the species of the L. casei group which were detected in the six commercial fermented products tested, thus showing that DNA extraction was efficient and that genomic DNA solutions were free of PCR inhibitors. For L. delbrueckii, the results of bacterial enumeration were generally lower by a factor 10 to 100 than those of PCR quantification, suggesting a loss of viability during storage of the dairy products at 1-8 degrees C for most of the strains in this species. Real-time quantitative assays enabled identification of the species of lactic acid bacterial strains initially present in commercial fermented milk products and their accurate quantification with a detection threshold of 10(3) cells per ml of product.

Stakeholder Engagement for Inclusive Water Governance: “Practicing What We Preach” with the OECD Water Governance Initiative

Directory of Open Access Journals (Sweden)

Aziza Akhmouch

2016-05-01

Full Text Available A cursory glance at the literature on water governance reveals that stakeholder engagement has long been considered an integral part of sound governance processes. However, a closer look at the literature reveals that, beyond this general assertion, there is a lack of evidence-based assessment on how engagement processes contribute to water governance objectives. This article addresses this research gap by presenting key findings and policy guidance from a study by the Organisation for Economic Co-operation and Development (OECD on “Stakeholder Engagement for Inclusive Water Governance”. This study employed comprehensive methods, including a survey administered to 215 stakeholder groups worldwide and separately, 69 case studies of specific stakeholder engagement initiatives on water management. This article also shares the experiences and lessons that have emerged from engaging stakeholders in the OECD Water Governance Initiative—an international multi-stakeholder policy forum created in 2013 to share policy and practical experiences on water governance at different levels. We hope this research will be used to stimulate and enrich discussions about the necessary conditions for results-oriented stakeholder engagement, and to guide decision makers accordingly.

Quantification results from an application of a new technique for human event analysis (ATHEANA) at a pressurized water reactor

International Nuclear Information System (INIS)

Whitehead, D.W.; Kolaczkowski, A.M.; Thompson, C.M.

1998-05-01

This paper presents results from the quantification of the three human failure events (HFEs) identified using the ATHEANA methodology as discussed in an earlier companion paper presented at this conference. Sections describe the quantification task, important basic events, and the results obtained from quantifying the three HFEs that were identified -- the first two of which were simulated at the Seabrook Station Simulator

Uranium in Kosovo's drinking water.

Science.gov (United States)

Berisha, Fatlume; Goessler, Walter

2013-11-01

The results of this paper are an initiation to capture the drinking water and/or groundwater elemental situation in the youngest European country, Kosovo. We aim to present a clear picture of the natural uranium concentration in drinking water and/or groundwater as it is distributed to the population of Kosovo. Nine hundred and fifty-one (951) drinking water samples were analyzed by inductively coupled plasma mass spectrometry (ICPMS). The results are the first countrywide interpretation of the uranium concentration in drinking water and/or groundwater, directly following the Kosovo war of 1999. More than 98% of the samples had uranium concentrations above 0.01 μg L(-1), which was also our limit of quantification. Concentrations up to 166 μg L(-1) were found with a mean of 5 μg L(-1) and median 1.6 μg L(-1) were found. Two point six percent (2.6%) of the analyzed samples exceeded the World Health Organization maximum acceptable concentration of 30 μg L(-1), and 44.2% of the samples exceeded the 2 μg L(-1) German maximum acceptable concentrations recommended for infant food preparations. Copyright © 2013 Elsevier Ltd. All rights reserved.

Using a hybrid model to predict solute transfer from initially saturated soil into surface runoff with controlled drainage water.

Science.gov (United States)

Tong, Juxiu; Hu, Bill X; Yang, Jinzhong; Zhu, Yan

2016-06-01

The mixing layer theory is not suitable for predicting solute transfer from initially saturated soil to surface runoff water under controlled drainage conditions. By coupling the mixing layer theory model with the numerical model Hydrus-1D, a hybrid solute transfer model has been proposed to predict soil solute transfer from an initially saturated soil into surface water, under controlled drainage water conditions. The model can also consider the increasing ponding water conditions on soil surface before surface runoff. The data of solute concentration in surface runoff and drainage water from a sand experiment is used as the reference experiment. The parameters for the water flow and solute transfer model and mixing layer depth under controlled drainage water condition are identified. Based on these identified parameters, the model is applied to another initially saturated sand experiment with constant and time-increasing mixing layer depth after surface runoff, under the controlled drainage water condition with lower drainage height at the bottom. The simulation results agree well with the observed data. Study results suggest that the hybrid model can accurately simulate the solute transfer from initially saturated soil into surface runoff under controlled drainage water condition. And it has been found that the prediction with increasing mixing layer depth is better than that with the constant one in the experiment with lower drainage condition. Since lower drainage condition and deeper ponded water depth result in later runoff start time, more solute sources in the mixing layer are needed for the surface water, and larger change rate results in the increasing mixing layer depth.

Impacts of model initialization on an integrated surface water - groundwater model

KAUST Repository

Ajami, Hoori

2015-04-01

Integrated hydrologic models characterize catchment responses by coupling the subsurface flow with land surface processes. One of the major areas of uncertainty in such models is the specification of the initial condition and its influence on subsequent simulations. A key challenge in model initialization is that it requires spatially distributed information on model states, groundwater levels and soil moisture, even when such data are not routinely available. Here, the impact of uncertainty in initial condition was explored across a 208 km2 catchment in Denmark using the ParFlow.CLM model. The initialization impact was assessed under two meteorological conditions (wet vs dry) using five depth to water table and soil moisture distributions obtained from various equilibrium states (thermal, root zone, discharge, saturated and unsaturated zone equilibrium) during the model spin-up. Each of these equilibrium states correspond to varying computation times to achieve stability in a particular aspect of the system state. Results identified particular sensitivity in modelled recharge and stream flow to the different initializations, but reduced sensitivity in modelled energy fluxes. Analysis also suggests that to simulate a year that is wetter than the spin-up period, an initialization based on discharge equilibrium is adequate to capture the direction and magnitude of surface water–groundwater exchanges. For a drier or hydrologically similar year to the spin-up period, an initialization based on groundwater equilibrium is required. Variability of monthly subsurface storage changes and discharge bias at the scale of a hydrological event show that the initialization impacts do not diminish as the simulations progress, highlighting the importance of robust and accurate initialization in capturing surface water–groundwater dynamics.

Letters initiating Clean Water Act 404(c) review of mining at Pebble deposit

Science.gov (United States)

Correspondence between EPA and the Pebble Limited Partnership and the State of Alaska initiating review under section 404(c) of the Clean Water Act of potential adverse environmental effects associated with mining the Pebble deposit in southwest Alaska.

Quantification of cellular uptake of DNA nanostructures by qPCR.

Science.gov (United States)

Okholm, Anders Hauge; Nielsen, Jesper Sejrup; Vinther, Mathias; Sørensen, Rasmus Schøler; Schaffert, David; Kjems, Jørgen

2014-05-15

DNA nanostructures facilitating drug delivery are likely soon to be realized. In the past few decades programmed self-assembly of DNA building blocks have successfully been employed to construct sophisticated nanoscale objects. By conjugating functionalities to DNA, other molecules such as peptides, proteins and polymers can be precisely positioned on DNA nanostructures. This exceptional ability to produce modular nanoscale devices with tunable and controlled behavior has initiated an interest in employing DNA nanostructures for drug delivery. However, to obtain this the relationship between cellular interactions and structural and functional features of the DNA delivery device must be thoroughly investigated. Here, we present a rapid and robust method for the precise quantification of the component materials of DNA origami structures capable of entering cells in vitro. The quantification is performed by quantitative polymerase chain reaction, allowing a linear dynamic range of detection of five orders of magnitude. We demonstrate the use of this method for high-throughput screening, which could prove efficient to identify key features of DNA nanostructures enabling cell penetration. The method described here is suitable for quantification of in vitro uptake studies but should easily be extended to quantify DNA nanostructures in blood or tissue samples. Copyright © 2014 Elsevier Inc. All rights reserved.

Comparison of five DNA quantification methods

DEFF Research Database (Denmark)

Nielsen, Karsten; Mogensen, Helle Smidt; Hedman, Johannes

2008-01-01

Six commercial preparations of human genomic DNA were quantified using five quantification methods: UV spectrometry, SYBR-Green dye staining, slot blot hybridization with the probe D17Z1, Quantifiler Human DNA Quantification kit and RB1 rt-PCR. All methods measured higher DNA concentrations than...... Quantification kit in two experiments. The measured DNA concentrations with Quantifiler were 125 and 160% higher than expected based on the manufacturers' information. When the Quantifiler human DNA standard (Raji cell line) was replaced by the commercial human DNA preparation G147A (Promega) to generate the DNA...... standard curve in the Quantifiler Human DNA Quantification kit, the DNA quantification results of the human DNA preparations were 31% higher than expected based on the manufacturers' information. The results indicate a calibration problem with the Quantifiler human DNA standard for its use...

Solar radiation influence on the decomposition process of diclofenac in surface waters

International Nuclear Information System (INIS)

Bartels, Peter; Tuempling, Wolf von

2007-01-01

Diclofenac can be detected in surface water of many rivers with human impacts worldwide. The observed decrease of the diclofenac concentration in waters and the formation of its photochemical transformation products under the impact of natural irradiation during one to 16 days are explained in this article. In semi-natural laboratory tests and in a field experiment it could be shown, that sunlight stimulates the decomposition of diclofenac in surface waters. During one day intensive solar radiation in middle European summer diclofenac decomposes in the surface layer of the water (0 to 5 cm) up to 83%, determined in laboratory exposition experiments. After two weeks in a field experiment, the diclofenac was not detectable anymore in the water surface layer (limit of quantification: 5 ng/L). At a water depth of 50 cm, within two weeks 96% of the initial concentration was degraded, while in 100 cm depth 2/3 of the initial diclofenac concentration remained. With the decomposition, stable and meta-stable photolysis products were formed and observed by UV detection. Beyond that the chemical structure of these products were determined. Three transformation products, that were not described in the literature so far, were identified and quantified with GC-MS

Initiating events in the safety probabilistic analysis of nuclear power plants

International Nuclear Information System (INIS)

Stasiulevicius, R.

1989-01-01

The importance of the initiating event in the probabilistic safety analysis of nuclear power plants are discussed and the basic procedures necessary for preparing reports, quantification and grouping of the events are described. The examples of initiating events with its occurence medium frequency, included those calculated for OCONEE reactor and Angra-1 reactor are presented. (E.G.)

The Source Inversion Validation (SIV) Initiative: A Collaborative Study on Uncertainty Quantification in Earthquake Source Inversions

Science.gov (United States)

Mai, P. M.; Schorlemmer, D.; Page, M.

2012-04-01

Earthquake source inversions image the spatio-temporal rupture evolution on one or more fault planes using seismic and/or geodetic data. Such studies are critically important for earthquake seismology in general, and for advancing seismic hazard analysis in particular, as they reveal earthquake source complexity and help (i) to investigate earthquake mechanics; (ii) to develop spontaneous dynamic rupture models; (iii) to build models for generating rupture realizations for ground-motion simulations. In applications (i - iii), the underlying finite-fault source models are regarded as "data" (input information), but their uncertainties are essentially unknown. After all, source models are obtained from solving an inherently ill-posed inverse problem to which many a priori assumptions and uncertain observations are applied. The Source Inversion Validation (SIV) project is a collaborative effort to better understand the variability between rupture models for a single earthquake (as manifested in the finite-source rupture model database) and to develop robust uncertainty quantification for earthquake source inversions. The SIV project highlights the need to develop a long-standing and rigorous testing platform to examine the current state-of-the-art in earthquake source inversion, and to develop and test novel source inversion approaches. We will review the current status of the SIV project, and report the findings and conclusions of the recent workshops. We will briefly discuss several source-inversion methods, how they treat uncertainties in data, and assess the posterior model uncertainty. Case studies include initial forward-modeling tests on Green's function calculations, and inversion results for synthetic data from spontaneous dynamic crack-like strike-slip earthquake on steeply dipping fault, embedded in a layered crustal velocity-density structure.

Warming by immersion or exercise affects initial cooling rate during subsequent cold water immersion.

Science.gov (United States)

Scott, Chris G; Ducharme, Michel B; Haman, François; Kenny, Glen P

2004-11-01

We examined the effect of prior heating, by exercise and warm-water immersion, on core cooling rates in individuals rendered mildly hypothermic by immersion in cold water. There were seven male subjects who were randomly assigned to one of three groups: 1) seated rest for 15 min (control); 2) cycling ergometry for 15 min at 70% Vo2 peak (active warming); or 3) immersion in a circulated bath at 40 degrees C to an esophageal temperature (Tes) similar to that at the end of exercise (passive warming). Subjects were then immersed in 7 degrees C water to a Tes of 34.5 degrees C. Initial Tes cooling rates (initial approximately 6 min cooling) differed significantly among the treatment conditions (0.074 +/- 0.045, 0.129 +/- 0.076, and 0.348 +/- 0.117 degrees C x min(-1) for control, active, and passive warming conditions, respectively); however, secondary cooling rates (rates following initial approximately 6 min cooling to the end of immersion) were not different between treatments (average of 0.102 +/- 0.085 degrees C x min(-1)). Overall Tes cooling rates during the full immersion period differed significantly and were 0.067 +/- 0.047, 0.085 +/- 0.045, and 0.209 +/- 0.131 degrees C x min(-1) for control, active, and passive warming, respectively. These results suggest that prior warming by both active and, to a greater extent, passive warming, may predispose a person to greater heat loss and to experience a larger decline in core temperature when subsequently exposed to cold water. Thus, functional time and possibly survival time could be reduced when cold water immersion is preceded by whole-body passive warming, and to a lesser degree by active warming.

Hanford Tanks Initiative risk management guide

International Nuclear Information System (INIS)

Schaus, P.S.

1997-01-01

This project-specific Risk Management Guide describes the general approach and process being used by the HTI Project to manage risk associated with execution of the HTI mission. It includes the initial identification of risk and the quantification of its likelihood and severity of its consequences. It further addresses the formulation of risk mitigation plans, periodic statusing of the Risk Management List, and risk closure

Understanding the Role of Water on Electron-Initiated Processes and Radical Chemistry

Energy Technology Data Exchange (ETDEWEB)

Garrett, Bruce C [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Colson, Steven D [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Dixon, David A. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Laufer, Allan H [US Department of Energy Office of Science Office of Basic Energy Sciences; Ray, Douglas [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

2003-06-10

On September 26–28, 2002, a workshop entitled “Understanding the Role of Water on Electron-Initiated Processes and Radical Chemistry” was held to assess new research opportunities in electron-driven processes and radical chemistry in aqueous systems. Of particular interest was the unique and complex role that the structure of water plays in influencing these processes. Novel experimental and theoretical approaches to solving long-standing problems in the field were explored. A broad selection of participants from universities and the national laboratories contributed to the workshop, which included scientific and technical presentations and parallel sessions for discussions and report writing.

Cost benefit analysis of outsourcing initiatives/strategy at water utilities corporation (Botswana) / G Mogomotsi

OpenAIRE

Mogomotsi, G

2016-01-01

After the Water Utilities Corporation adopted outsourcing as a policy initiative and operational directive various non-core functions were outsourced. This raises obvious questions as to why the Corporation suddenly decided to do this. Does the Corporation indeed benefit in terms of value addition from outsourced functions? Some of the pertinent questions include: To what extent did policy guidelines and operational measures govern the said outsourcing initiatives? What are the...

Initial pressure spike and its propagation phenomena in sodium-water reaction tests for MONJU steam generators

International Nuclear Information System (INIS)

Sato, M.; Hiroi, H.; Tanaka, N.; Hori, M.

1977-01-01

With the objective of demonstrating the safe design of steam generators for prototype LMFBR MONJU against the postulated large-leak accident, a number of large-leak sodium-water reaction tests have been conducted using the SWAT-1 and SWAT-3 rigs. Investigation of the potential effects of pressure load on the system is one of the major concerns in these tests. This paper reports the behavior of initial pressure spike in the reaction vessel, its propagation phenomena to the simulated secondary cooling system, and the comparisons with the computer code for one-dimensional pressure wave propagation problems. Both rigs used are the scaled-down models of the helically coiled steam generators of MONJU. The SWAT-1 rig is a simplified model and consists of a reaction vessel (1/8 scale of MONJU evaporator with 0.4 m dia. and 2.5 m height) and a pressure relief system i.e., a pressure relief line and a reaction products tank. On the other hand, the SWAT-3 rig is a 1/2.5 scale of MONJU SG system and consists of an evaporator (reaction vessel with 1.3 m dia. and 6.35 m height), a superheater, an intermediate heat exchanger (IHX), a piping system simulating the secondary cooling circuit and a pressure relief system. The both water injection systems consist of a water injection line with a rupture disk installed in front of injection hole and an electrically heated water tank. Choice of water injection rates in the scaled-down models is made based on the method of iso-velocity modeling. Test results indicated that the characteristics of the initial pressure spike are dominated by those of initial water injection which are controlled by the conditions of water heater and the size of water injection hole, etc

Impact of sequential proton density fat fraction for quantification of hepatic steatosis in nonalcoholic fatty liver disease.

Science.gov (United States)

Idilman, Ilkay S; Keskin, Onur; Elhan, Atilla Halil; Idilman, Ramazan; Karcaaltincaba, Musturay

2014-05-01

To determine the utility of sequential MRI-estimated proton density fat fraction (MRI-PDFF) for quantification of the longitudinal changes in liver fat content in individuals with nonalcoholic fatty liver disease (NAFLD). A total of 18 consecutive individuals (M/F: 10/8, mean age: 47.7±9.8 years) diagnosed with NAFLD, who underwent sequential PDFF calculations for the quantification of hepatic steatosis at two different time points, were included in the study. All patients underwent T1-independent volumetric multi-echo gradient-echo imaging with T2* correction and spectral fat modeling. A close correlation for quantification of hepatic steatosis between the initial MRI-PDFF and liver biopsy was observed (rs=0.758, phepatic steatosis. The changes in serum ALT levels significantly reflected changes in MRI-PDFF in patients with NAFLD.

University of Idaho Water of the West Initiative: Development of a sustainable, interdisciplinary water resources program

Science.gov (United States)

Boll, J.; Cosens, B.; Fiedler, F.; Link, T.; Wilson, P.; Harris, C.; Tuller, M.; Johnson, G.; Kennedy, B.

2006-12-01

Recently, an interdisciplinary group of faculty from the University of Idaho was awarded a major internal grant for their project "Water of the West (WoW)" to launch an interdisciplinary Water Resources Graduate Education Program. This Water Resources program will facilitate research and education to influence both the scientific understanding of the resource and how it is managed, and advance the decision-making processes that are the means to address competing societal values. By educating students to integrate environmental sciences, socio-economic, and political issues, the WoW project advances the University's land grant mission to promote economic and social development in the state of Idaho. This will be accomplished through novel experiential interdisciplinary education activities; creation of interdisciplinary research efforts among water resources faculty; and focusing on urgent regional problems with an approach that will involve and provide information to local communities. The Water Resources Program will integrate physical and biological sciences, social science, law, policy and engineering to address problems associated with stewardship of our scarce water resources. As part of the WoW project, faculty will: (1) develop an integrative problem-solving framework; (2) develop activities to broaden WR education; (3) collaborate with the College of Law to offer a concurrent J.D. degree, (4) develop a virtual system of watersheds for teaching and research, and (5) attract graduate students for team-based education. The new program involves 50 faculty from six colleges and thirteen departments across the university. This university-wide initiative is strengthened by collaboration with the Idaho Water Resources Research Institute, and participation from off-campus Centers in Idaho Falls, Boise, Twin Falls, and Coeur d'Alene. We hope this presentation will attract university faculty, water resources professionals, and others for stimulating discussions on

Empirical quantification of lacustrine groundwater discharge - different methods and their limitations

Science.gov (United States)

Meinikmann, K.; Nützmann, G.; Lewandowski, J.

2015-03-01

Groundwater discharge into lakes (lacustrine groundwater discharge, LGD) can be an important driver of lake eutrophication. Its quantification is difficult for several reasons, and thus often neglected in water and nutrient budgets of lakes. In the present case several methods were applied to determine the expansion of the subsurface catchment, to reveal areas of main LGD and to identify the variability of LGD intensity. Size and shape of the subsurface catchment served as a prerequisite in order to calculate long-term groundwater recharge and thus the overall amount of LGD. Isotopic composition of near-shore groundwater was investigated to validate the quality of catchment delineation in near-shore areas. Heat as a natural tracer for groundwater-surface water interactions was used to find spatial variations of LGD intensity. Via an analytical solution of the heat transport equation, LGD rates were calculated from temperature profiles of the lake bed. The method has some uncertainties, as can be found from the results of two measurement campaigns in different years. The present study reveals that a combination of several different methods is required for a reliable identification and quantification of LGD and groundwater-borne nutrient loads.

Generation of structural MR images from amyloid PET: Application to MR-less quantification.

Science.gov (United States)

Choi, Hongyoon; Lee, Dong Soo

2017-12-07

Structural magnetic resonance (MR) images concomitantly acquired with PET images can provide crucial anatomical information for precise quantitative analysis. However, in the clinical setting, not all the subjects have corresponding MR. Here, we developed a model to generate structural MR images from amyloid PET using deep generative networks. We applied our model to quantification of cortical amyloid load without structural MR. Methods: We used florbetapir PET and structural MR data of Alzheimer's Disease Neuroimaging Initiative database. The generative network was trained to generate realistic structural MR images from florbetapir PET images. After the training, the model was applied to the quantification of cortical amyloid load. PET images were spatially normalized to the template space using the generated MR and then standardized uptake value ratio (SUVR) of the target regions was measured by predefined regions-of-interests. A real MR-based quantification was used as the gold standard to measure the accuracy of our approach. Other MR-less methods, a normal PET template-based, multi-atlas PET template-based and PET segmentation-based normalization/quantification methods, were also tested. We compared performance of quantification methods using generated MR with that of MR-based and MR-less quantification methods. Results: Generated MR images from florbetapir PET showed visually similar signal patterns to the real MR. The structural similarity index between real and generated MR was 0.91 ± 0.04. Mean absolute error of SUVR of cortical composite regions estimated by the generated MR-based method was 0.04±0.03, which was significantly smaller than other MR-less methods (0.29±0.12 for the normal PET-template, 0.12±0.07 for multiatlas PET-template and 0.08±0.06 for PET segmentation-based methods). Bland-Altman plots revealed that the generated MR-based SUVR quantification was the closest to the SUVR values estimated by the real MR-based method. Conclusion

Development of an Ion-Pairing Reagent and HPLC-UV Method for the Detection and Quantification of Six Water-Soluble Vitamins in Animal Feed

Directory of Open Access Journals (Sweden)

Ho Jin Kim

2016-01-01

Full Text Available A novel and simple method for detecting six water-soluble vitamins in animal feed using high performance liquid chromatography equipped with a photodiode array detector (HPLC/PDA and ion-pairing reagent was developed. The chromatographic peaks of the six water-soluble vitamins were successfully identified by comparing their retention times and UV spectra with reference standards. The mobile phase was composed of buffers A (5 mM PICB-6 in 0.1% CH3COOH and B (5 mM PICB-6 in 65% methanol. All peaks were detected using a wavelength of 270 nm. Method validation was performed in terms of linearity, sensitivity, selectivity, accuracy, and precision. The limits of detection (LODs for the instrument employed in these experiments ranged from 25 to 197 μg/kg, and the limits of quantification (LOQs ranged from 84 to 658 μg/kg. Average recoveries of the six water-soluble vitamins ranged from 82.3% to 98.9%. Method replication resulted in intraday and interday peak area variation of <5.6%. The developed method was specific and reliable and is therefore suitable for the routine analysis of water-soluble vitamins in animal feed.

Simultaneous quantification of acetanilide herbicides and their oxanilic and sulfonic acid metabolites in natural waters.

Science.gov (United States)

Heberle, S A; Aga, D S; Hany, R; Müller, S R

2000-02-15

This paper describes a procedure for simultaneous enrichment, separation, and quantification of acetanilide herbicides and their major ionic oxanilic acid (OXA) and ethanesulfonic acid (ESA) metabolites in groundwater and surface water using Carbopack B as a solid-phase extraction (SPE) material. The analytes adsorbed on Carbopack B were eluted selectively from the solid phase in three fractions containing the parent compounds (PCs), their OXA metabolites, and their ESA metabolites, respectively. The complete separation of the three compound classes allowed the analysis of the neutral PCs (acetochlor, alachlor, and metolachlor) and their methylated OXA metabolites by gas chromatography/mass spectrometry. The ESA compounds were analyzed by high-performance liquid chromatography with UV detection. The use of Carbopack B resulted in good recoveries of the polar metabolites even from large sample volumes (1 L). Absolute recoveries from spiked surface and groundwater samples ranged between 76 and 100% for the PCs, between 41 and 91% for the OXAs, and between 47 and 96% for the ESAs. The maximum standard deviation of the absolute recoveries was 12%. The method detection limits are between 1 and 8 ng/L for the PCs, between 1 and 7 ng/L for the OXAs, and between 10 and 90 ng/L for the ESAs.

Water balance and ad libitum water intake in football players during a training session

Directory of Open Access Journals (Sweden)

Juan Diego Hernández-Camacho

2016-01-01

Full Text Available Introduction: It is known that hydration plays a crucial performance in sports performance. But a great number of studies assessing hydration during football practice have shown that many players have a dehydration state prior to this sport and that most players are not able to replace water loss by sweating with ad libitum water intake. Objectives: To analyze ad libitum water consumption, water balance, thirst sensation and rate of perceived exertion on a sample of young football players during a training session. Material and Methods: A total of 57 players from three teams in the youth category voluntary participated in this study. Weight was collected at the beginning and at the end of training; thirst sensation, rate of perceived exertion and quantification of ingested water were assessed. We used descriptive statistics, correlational and ratio analysis. Results: Mean global intake of players studied was 844.74±351.95mL and an average loss of body water 1274.56±385.82mL. Average rate of dehydration of the initial weight was 0.63%. Average score of 2.81±1.32 on the scale of thirst sensation was obtained. Discussion and conclusions: Rate of loss of body water similar to previous studies is obtained. The players were not able to replace water loss by drinking liquid ad libitum, so the intake of an amount previously scheduled could become helpful.

Demonstration of uncertainty quantification and sensitivity analysis for PWR fuel performance with BISON

International Nuclear Information System (INIS)

Zhang, Hongbin; Zhao, Haihua; Zou, Ling; Burns, Douglas; Ladd, Jacob

2017-01-01

BISON is an advanced fuels performance code being developed at Idaho National Laboratory and is the code of choice for fuels performance by the U.S. Department of Energy (DOE)’s Consortium for Advanced Simulation of Light Water Reactors (CASL) Program. An approach to uncertainty quantification and sensitivity analysis with BISON was developed and a new toolkit was created. A PWR fuel rod model was developed and simulated by BISON, and uncertainty quantification and sensitivity analysis were performed with eighteen uncertain input parameters. The maximum fuel temperature and gap conductance were selected as the figures of merit (FOM). Pearson, Spearman, and partial correlation coefficients were considered for all of the figures of merit in sensitivity analysis. (author)

Demonstration of Uncertainty Quantification and Sensitivity Analysis for PWR Fuel Performance with BISON

Energy Technology Data Exchange (ETDEWEB)

Zhang, Hongbin; Ladd, Jacob; Zhao, Haihua; Zou, Ling; Burns, Douglas

2015-11-01

BISON is an advanced fuels performance code being developed at Idaho National Laboratory and is the code of choice for fuels performance by the U.S. Department of Energy (DOE)’s Consortium for Advanced Simulation of Light Water Reactors (CASL) Program. An approach to uncertainty quantification and sensitivity analysis with BISON was developed and a new toolkit was created. A PWR fuel rod model was developed and simulated by BISON, and uncertainty quantification and sensitivity analysis were performed with eighteen uncertain input parameters. The maximum fuel temperature and gap conductance were selected as the figures of merit (FOM). Pearson, Spearman, and partial correlation coefficients were considered for all of the figures of merit in sensitivity analysis.

EDF program on SCC initiation of cold-worked stainless steels in primary water

Energy Technology Data Exchange (ETDEWEB)

Huguenin, P.; Vaillant, F.; Couvant, T. [Electricite de France (EDF/RD), Site des Renardieres, 77 - Moret sur loing (France); Buisse, L. [EDF UTO, 93 - Noisy-Le-Grand (France); Huguenin, P.; Crepin, J.; Duhamel, C.; Proudhon, H. [MINES ParisTech, Centre des Materiaux, 91 - Evry (France); Ilevbare, G. [EPRI California (United States)

2009-07-01

A few cases of Intergranular Stress Corrosion Cracking (IGSCC) on cold-worked austenitic stainless steels in primary water have been detected in French Pressurized Water Reactors (PWRs). A previous program launched in the early 2000's identified the required conditions for SCC of cold-worked stainless steels. It was found that a high strain hardening coupled with cyclic loading favoured SCC, whereas cracking under static conditions appeared to be difficult. A propagation model was also proposed. The first available results of the present study demonstrate the strong influence of a trapezoidal cyclic loading on the creep of 304L austenitic stainless steel. While no creep was detected under a pure static loading, the creep rate was increased by a factor 102 under a trapezoidal cyclic loading. The first results of SCC initiation performed on notched specimens under a trapezoidal cyclic loading at low frequency are presented. The present study aims at developing an engineering model for IGSCC initiation of 304L, 316L and weld 308L stainless steels. The effect of the pre-straining on the SCC mechanisms is more specifically studied. Such a model will be based on (i) SCC initiation tests on notched and smooth specimens under 'trapezoidal' cyclic loading and, (ii) constant strain rate SCC initiation tests. The influence of stress level, cold-work level, strain path, surface roughness and temperature is particularly investigated. (authors)

Lung involvement quantification in chest radiographs

International Nuclear Information System (INIS)

Giacomini, Guilherme; Alvarez, Matheus; Oliveira, Marcela de; Miranda, Jose Ricardo A.; Pina, Diana R.; Pereira, Paulo C.M.; Ribeiro, Sergio M.

2014-01-01

Tuberculosis (TB) caused by Mycobacterium tuberculosis, is an infectious disease which remains a global health problem. The chest radiography is the commonly method employed to assess the TB's evolution. The methods for quantification of abnormalities of chest are usually performed on CT scans (CT). This quantification is important to assess the TB evolution and treatment and comparing different treatments. However, precise quantification is not feasible for the amount of CT scans required. The purpose of this work is to develop a methodology for quantification of lung damage caused by TB through chest radiographs. It was developed an algorithm for computational processing of exams in Matlab, which creates a lungs' 3D representation, with compromised dilated regions inside. The quantification of lung lesions was also made for the same patients through CT scans. The measurements from the two methods were compared and resulting in strong correlation. Applying statistical Bland and Altman, all samples were within the limits of agreement, with a confidence interval of 95%. The results showed an average variation of around 13% between the two quantification methods. The results suggest the effectiveness and applicability of the method developed, providing better risk-benefit to the patient and cost-benefit ratio for the institution. (author)

Fluorescent quantification of melanin.

Science.gov (United States)

Fernandes, Bruno; Matamá, Teresa; Guimarães, Diana; Gomes, Andreia; Cavaco-Paulo, Artur

2016-11-01

Melanin quantification is reportedly performed by absorption spectroscopy, commonly at 405 nm. Here, we propose the implementation of fluorescence spectroscopy for melanin assessment. In a typical in vitro assay to assess melanin production in response to an external stimulus, absorption spectroscopy clearly overvalues melanin content. This method is also incapable of distinguishing non-melanotic/amelanotic control cells from those that are actually capable of performing melanogenesis. Therefore, fluorescence spectroscopy is the best method for melanin quantification as it proved to be highly specific and accurate, detecting even small variations in the synthesis of melanin. This method can also be applied to the quantification of melanin in more complex biological matrices like zebrafish embryos and human hair. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Multiscale Characterization and Quantification of Arsenic Mobilization and Attenuation During Injection of Treated Coal Seam Gas Coproduced Water into Deep Aquifers

Science.gov (United States)

Rathi, Bhasker; Siade, Adam J.; Donn, Michael J.; Helm, Lauren; Morris, Ryan; Davis, James A.; Berg, Michael; Prommer, Henning

2017-12-01

Coal seam gas production involves generation and management of large amounts of co-produced water. One of the most suitable methods of management is injection into deep aquifers. Field injection trials may be used to support the predictions of anticipated hydrological and geochemical impacts of injection. The present work employs reactive transport modeling (RTM) for a comprehensive analysis of data collected from a trial where arsenic mobilization was observed. Arsenic sorption behavior was studied through laboratory experiments, accompanied by the development of a surface complexation model (SCM). A field-scale RTM that incorporated the laboratory-derived SCM was used to simulate the data collected during the field injection trial and then to predict the long-term fate of arsenic. We propose a new practical procedure which integrates laboratory and field-scale models using a Monte Carlo type uncertainty analysis and alleviates a significant proportion of the computational effort required for predictive uncertainty quantification. The results illustrate that both arsenic desorption under alkaline conditions and pyrite oxidation have likely contributed to the arsenic mobilization that was observed during the field trial. The predictive simulations show that arsenic concentrations would likely remain very low if the potential for pyrite oxidation is minimized through complete deoxygenation of the injectant. The proposed modeling and predictive uncertainty quantification method can be implemented for a wide range of groundwater studies that investigate the risks of metal(loid) or radionuclide contamination.

Multi-model and multi-scenario assessments of Asian water futures: The Water Futures and Solutions (WFaS) initiative

Science.gov (United States)

Satoh, Yusuke; Kahil, Taher; Byers, Edward; Burek, Peter; Fischer, Günther; Tramberend, Sylvia; Greve, Peter; Flörke, Martina; Eisner, Stephanie; Hanasaki, Naota; Magnuszewski, Piotr; Nava, Luzma Fabiola; Cosgrove, William; Langan, Simon; Wada, Yoshihide

2017-07-01

This paper presents one of the first quantitative scenario assessments for future water supply and demand in Asia to 2050. The assessment, developed by the Water Futures and Solutions (WFaS) initiative, uses the latest set of global climate change and socioeconomic scenarios and state-of-the-art global hydrological models. In Asia, water demand for irrigation, industry, and households is projected to increase substantially in the coming decades (30-40% by 2050 compared to 2010). These changes are expected to exacerbate water stress, especially in the current hotspots such as north India and Pakistan, and north China. By 2050, 20% of the land area in the Asia-Pacific region, with a population of 1.6-2 billion, is projected to experience severe water stress. We find that socioeconomic changes are the main drivers of worsening water scarcity in Asia, with climate change impacts further increasing the challenge into the 21st century. Moreover, a detailed basin-level analysis of the hydro-economic conditions of 40 Asian basins shows that although the coping capacity of all basins is expected to improve due to gross domestic product (GDP) growth, some basins continuously face severe water challenges. These basins will potentially be home to up to 1.6 billion people by mid-21st century.

Absolute quantification of norovirus capsid protein in food, water, and soil using synthetic peptides with electrospray and MALDI mass spectrometry

International Nuclear Information System (INIS)

Hartmann, Erica M.; Colquhoun, David R.; Schwab, Kellogg J.; Halden, Rolf U.

2015-01-01

Highlights: • Mass spectrometry-based methods for norovirus quantification are developed. • Absolute quantification is achieved using internal heavy isotope-labeled standards. • A single labeled peptide serves in two distinct detection strategies. • These methods are validated for food, water, and soil analysis. • MS-based detection limits are lowered by two orders of magnitude. - Abstract: Norovirus infections are one of the most prominent public health problems of microbial origin in the U.S. and other industrialized countries. Surveillance is necessary to prevent secondary infection, confirm successful cleanup after outbreaks, and track the causative agent. Quantitative mass spectrometry, based on absolute quantitation with stable-isotope labeled peptides, is a promising tool for norovirus monitoring because of its speed, sensitivity, and robustness in the face of environmental inhibitors. In the current study, we present two new methods for the detection of the norovirus genogroup I capsid protein using electrospray and matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. The peptide TLDPIEVPLEDVR was used to quantify norovirus-like particles down to 500 attomoles with electrospray and 100 attomoles with MALDI. With MALDI, we also demonstrate a detection limit of 1 femtomole and a quantitative dynamic range of 5 orders of magnitude in the presence of an environmental matrix effect. Due to the rapid processing time and applicability to a wide range of environmental sample types (bacterial lysate, produce, milk, soil, and groundwater), mass spectrometry-based absolute quantitation has a strong potential for use in public health and environmental sciences

Absolute quantification of norovirus capsid protein in food, water, and soil using synthetic peptides with electrospray and MALDI mass spectrometry

Energy Technology Data Exchange (ETDEWEB)

Hartmann, Erica M. [Center for Environmental Security and Security Defense Systems Initiative, The Biodesign Institute, Arizona State University, 781 E. Terrace Mall, Tempe, AZ 85287-5904 (United States); Colquhoun, David R.; Schwab, Kellogg J. [Department of Environmental Health Sciences, The Johns Hopkins University, Bloomberg School of Public Health, 615 N. Wolfe St., Baltimore, MD 21205 (United States); Halden, Rolf U., E-mail: halden@asu.edu [Center for Environmental Security and Security Defense Systems Initiative, The Biodesign Institute, Arizona State University, 781 E. Terrace Mall, Tempe, AZ 85287-5904 (United States); Department of Environmental Health Sciences, The Johns Hopkins University, Bloomberg School of Public Health, 615 N. Wolfe St., Baltimore, MD 21205 (United States)

2015-04-09

Highlights: • Mass spectrometry-based methods for norovirus quantification are developed. • Absolute quantification is achieved using internal heavy isotope-labeled standards. • A single labeled peptide serves in two distinct detection strategies. • These methods are validated for food, water, and soil analysis. • MS-based detection limits are lowered by two orders of magnitude. - Abstract: Norovirus infections are one of the most prominent public health problems of microbial origin in the U.S. and other industrialized countries. Surveillance is necessary to prevent secondary infection, confirm successful cleanup after outbreaks, and track the causative agent. Quantitative mass spectrometry, based on absolute quantitation with stable-isotope labeled peptides, is a promising tool for norovirus monitoring because of its speed, sensitivity, and robustness in the face of environmental inhibitors. In the current study, we present two new methods for the detection of the norovirus genogroup I capsid protein using electrospray and matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. The peptide TLDPIEVPLEDVR was used to quantify norovirus-like particles down to 500 attomoles with electrospray and 100 attomoles with MALDI. With MALDI, we also demonstrate a detection limit of 1 femtomole and a quantitative dynamic range of 5 orders of magnitude in the presence of an environmental matrix effect. Due to the rapid processing time and applicability to a wide range of environmental sample types (bacterial lysate, produce, milk, soil, and groundwater), mass spectrometry-based absolute quantitation has a strong potential for use in public health and environmental sciences.

Quantification of Helicobacter pylori in the viable but nonculturable state by quantitative PCR in water disinfected with ozone.

Science.gov (United States)

Casasola-Rodríguez, B; Orta de Velásquez, M T; Luqueño-Martínez, V G; Monje-Ramírez, I

2013-01-01

Helicobacter pylori is a Gram-negative spiral-shaped bacterium that colonizes the gastric mucosa and is associated with gastric diseases. It may present a morphological adaptation when it is out of its natural environment, such as in water. The morphological adaptation is a coccoid form, which is a viable but non-culturable state (VNC) in which the DNA remains active and therefore infective. Due to the impossibility of culture by traditional methods in the VNC state, we developed a methodology that includes a molecular technique, quantitative polymerase chain reaction (qPCR), which is capable of measuring the bacteria in both forms (helical and coccoidal) and therefore is able to measure a disinfection process and to estimate the resistance of the bacteria to ozone. The methodology developed measures the efficiency of the ozone disinfection when bacteria are in a VNC state only. Bacterial culture at 9 × 10(8)CFU/mL diluted in 40 mL reaction volumes were exposed to a wide range of CT values (0.11-15 mg min/L). The results show a 3.92-log reduction when treated with 15 mg min/L. Our results demonstrate the feasibility of using qPCR for the quantification and detection of H. pylori, in coccoid form, in water systems treated with an ozone disinfection process.

Understanding the dynamics of citrus water use

CSIR Research Space (South Africa)

Taylor, NJ

2012-12-01

Full Text Available The quantification of water use of citrus orchards is important in order to prevent stress developing in the orchard and to avoid wasting precious water resources. Measurement of citrus orchard water use is not possible under all environ-mental...

Verb aspect, alternations and quantification

Directory of Open Access Journals (Sweden)

Svetla Koeva

2015-11-01

Full Text Available Verb aspect, alternations and quantification In this paper we are briefly discuss the nature of Bulgarian verb aspect and argue that the verb aspect pairs are different lexical units with different (although related meaning, different argument structure (reflecting categories, explicitness and referential status of arguments and different sets of semantic and syntactic alternations. The verb prefixes resulting in perfective verbs derivation in some cases can be interpreted as lexical quantifiers as well. Thus the Bulgarian verb aspect is related (in different way both with the potential for the generation of alternations and with the prefixal lexical quantification. It is shown that the scope of the lexical quantification by means of verbal prefixes is the quantified verb phrase and the scope remains constant in all derived alternations. The paper concerns the basic issues of these complex problems, while the detailed description of the conditions satisfying particular alternation or particular lexical quantification are subject of a more detailed study.

Critical discharge of initially subcooled water through slits. [PWR; BWR

Energy Technology Data Exchange (ETDEWEB)

Amos, C N; Schrock, V E

1983-09-01

This report describes an experimental investigation into the critical flow of initially subcooled water through rectangular slits. The study of such flows is relevant to the prediction of leak flow rates from cracks in piping, or pressure vessels, which contain sufficient enthalpy that vaporization will occur if they are allowed to expand to the ambient pressure. Two new analytical models, which allow for the generation of a metastable liquid phase, are developed. Experimental results are compared with the predictions of both these new models and with a Fanno Homogeneous Equilibrium Model.

PWR water chemistry controls: a perspective on industry initiatives and trends relative to operating experience and the EPRI PWR water chemistry guidelines

International Nuclear Information System (INIS)

Fruzzetti, K.; Choi, S.; Haas, C.; Pender, M.; Perkins, D.

2010-01-01

An effective PWR water chemistry control program must address the following goals: Minimize materials degradation (e.g., PWSCC, corrosion of fuel, corrosion damage of steam generator (SG) tubes); Maintain fuel integrity and good performance; Minimize corrosion product transport (e.g., transport and deposition on the fuel, transport into the SGs where it can foul tube surfaces and create crevice environments for the concentration of corrosive impurities); Minimize dose rates. Water chemistry control must be optimized to provide overall improvement considering the sometimes variant constraints of the goals listed above. New technologies are developed for continued mitigation of materials degradation, continued fuel integrity and good performance, continued reduction of corrosion product transport, and continued minimization of plant dose rates. The EPRI chemistry program, in coordination with other EPRI programs, strives to improve these areas through application of chemistry initiatives, focusing on these goals. This paper highlights the major initiatives and issues with respect to PWR primary and secondary system chemistry and outlines the recent, on-going, and proposed work to effectively address them. These initiatives are presented in light of recent operating experience, as derived from EPRI's PWR chemistry monitoring and assessment program, and EPRI's water chemistry guidelines. (author)

Flow cytometric bacterial cell counts challenge conventional heterotrophic plate counts for routine microbiological drinking water monitoring

KAUST Repository

Van Nevel, S.

2017-02-08

Drinking water utilities and researchers continue to rely on the century-old heterotrophic plate counts (HPC) method for routine assessment of general microbiological water quality. Bacterial cell counting with flow cytometry (FCM) is one of a number of alternative methods that challenge this status quo and provide an opportunity for improved water quality monitoring. After more than a decade of application in drinking water research, FCM methodology is optimised and established for routine application, supported by a considerable amount of data from multiple full-scale studies. Bacterial cell concentrations obtained by FCM enable quantification of the entire bacterial community instead of the minute fraction of cultivable bacteria detected with HPC (typically < 1% of all bacteria). FCM measurements are reproducible with relative standard deviations below 3% and can be available within 15 min of samples arriving in the laboratory. High throughput sample processing and complete automation are feasible and FCM analysis is arguably less expensive than HPC when measuring more than 15 water samples per day, depending on the laboratory and selected staining procedure(s). Moreover, many studies have shown FCM total (TCC) and intact (ICC) cell concentrations to be reliable and robust process variables, responsive to changes in the bacterial abundance and relevant for characterising and monitoring drinking water treatment and distribution systems. The purpose of this critical review is to initiate a constructive discussion on whether FCM could replace HPC in routine water quality monitoring. We argue that FCM provides a faster, more descriptive and more representative quantification of bacterial abundance in drinking water.

Flow cytometric bacterial cell counts challenge conventional heterotrophic plate counts for routine microbiological drinking water monitoring

KAUST Repository

Van Nevel, S.; Koetzsch, S.; Proctor, C.R.; Besmer, M.D.; Prest, E.I.; Vrouwenvelder, Johannes S.; Knezev, A.; Boon, N.; Hammes, F.

2017-01-01

Drinking water utilities and researchers continue to rely on the century-old heterotrophic plate counts (HPC) method for routine assessment of general microbiological water quality. Bacterial cell counting with flow cytometry (FCM) is one of a number of alternative methods that challenge this status quo and provide an opportunity for improved water quality monitoring. After more than a decade of application in drinking water research, FCM methodology is optimised and established for routine application, supported by a considerable amount of data from multiple full-scale studies. Bacterial cell concentrations obtained by FCM enable quantification of the entire bacterial community instead of the minute fraction of cultivable bacteria detected with HPC (typically < 1% of all bacteria). FCM measurements are reproducible with relative standard deviations below 3% and can be available within 15 min of samples arriving in the laboratory. High throughput sample processing and complete automation are feasible and FCM analysis is arguably less expensive than HPC when measuring more than 15 water samples per day, depending on the laboratory and selected staining procedure(s). Moreover, many studies have shown FCM total (TCC) and intact (ICC) cell concentrations to be reliable and robust process variables, responsive to changes in the bacterial abundance and relevant for characterising and monitoring drinking water treatment and distribution systems. The purpose of this critical review is to initiate a constructive discussion on whether FCM could replace HPC in routine water quality monitoring. We argue that FCM provides a faster, more descriptive and more representative quantification of bacterial abundance in drinking water.

Role of cavity formation in SCC of cold worked carbon steel in high-temperature water. Part 2. Study of crack initiation behavior

International Nuclear Information System (INIS)

Yamada, Takuyo; Aoki, Masanori; Miyamoto, Tomoki; Arioka, Koji

2013-01-01

To consider the role of cavity formation in stress corrosion cracking (SCC) of cold worked (CW) carbon steel in high-temperature water, SCC and creep growth (part 1) and initiation (part 2) tests were performed. The part 2 crack initiation tests used blunt notched compact tension (CT) type specimens of CW carbon steel exposed under the static load condition in hydrogenated pure water and in air in the range of temperatures between 360 and 450°C. Inter-granular (IG) crack initiation was observed both in water and in air even in static load condition when steel specimens had been cold worked. 1/T type temperature dependencies of initiation times were observed for CW carbon steel, and the crack initiation times in an operating pressurized heavy water reactor, PHWR (Pt Lepreau) seemed to lie on the extrapolated line of the experimental results. Cavities were identified at the grain boundaries near the bottom of a notch (highly stressed location) before cracks initiated both in water and air. The cavities were probably formed by the condensation of vacancies and they affected the bond strength of the grain boundaries. To assess the mechanism of IGSCC initiation in high temperature water, the diffusion of vacancies driven by stress gradients was studied using a specially designed CT specimen. As a model for IGSCC in CW carbon steel in high temperature water, it was concluded that the formation of cavities from the collapse of vacancies offers the best interpretation of the present data. (author)

Characterisation and optimisation of a sample preparation method for the detection and quantification of atmospherically relevant carbonyl compounds in aqueous medium

Science.gov (United States)

Rodigast, M.; Mutzel, A.; Iinuma, Y.; Haferkorn, S.; Herrmann, H.

2015-06-01

Carbonyl compounds are ubiquitous in the atmosphere and either emitted primarily from anthropogenic and biogenic sources or they are produced secondarily from the oxidation of volatile organic compounds. Despite a number of studies about the quantification of carbonyl compounds a comprehensive description of optimised methods is scarce for the quantification of atmospherically relevant carbonyl compounds. The method optimisation was conducted for seven atmospherically relevant carbonyl compounds including acrolein, benzaldehyde, glyoxal, methyl glyoxal, methacrolein, methyl vinyl ketone and 2,3-butanedione. O-(2,3,4,5,6-pentafluorobenzyl)hydroxylamine hydrochloride (PFBHA) was used as derivatisation reagent and the formed oximes were detected by gas chromatography/mass spectrometry (GC/MS). With the present method quantification can be carried out for each carbonyl compound originating from fog, cloud and rain or sampled from the gas- and particle phase in water. Detection limits between 0.01 and 0.17 μmol L-1 were found, depending on carbonyl compounds. Furthermore, best results were found for the derivatisation with a PFBHA concentration of 0.43 mg mL-1 for 24 h followed by a subsequent extraction with dichloromethane for 30 min at pH = 1. The optimised method was evaluated in the present study by the OH radical initiated oxidation of 3-methylbutanone in the aqueous phase. Methyl glyoxal and 2,3-butanedione were found to be oxidation products in the samples with a yield of 2% for methyl glyoxal and 14% for 2,3-butanedione after a reaction time of 5 h.

Uncertainty quantification theory, implementation, and applications

CERN Document Server

Smith, Ralph C

2014-01-01

The field of uncertainty quantification is evolving rapidly because of increasing emphasis on models that require quantified uncertainties for large-scale applications, novel algorithm development, and new computational architectures that facilitate implementation of these algorithms. Uncertainty Quantification: Theory, Implementation, and Applications provides readers with the basic concepts, theory, and algorithms necessary to quantify input and response uncertainties for simulation models arising in a broad range of disciplines. The book begins with a detailed discussion of applications where uncertainty quantification is critical for both scientific understanding and policy. It then covers concepts from probability and statistics, parameter selection techniques, frequentist and Bayesian model calibration, propagation of uncertainties, quantification of model discrepancy, surrogate model construction, and local and global sensitivity analysis. The author maintains a complementary web page where readers ca...

Habituation of the initial responses to cold water immersion in humans: a central or peripheral mechanism?

Science.gov (United States)

Tipton, M J; Eglin, C M; Golden, F S

1998-10-15

1. The initial respiratory and cardiac responses to cold water immersion are thought to be responsible for a significant number of open water deaths each year. Previous research has demonstrated that the magnitude of these responses can be reduced by repeated immersions in cold waterwhether the site of habituation is central or peripheral. 2. Two groups of subjects undertook two 3 min head-out immersions in stirred water at 10 C of the right-hand side of the body (R). Between these two immersions (3 whole days) the control group (n = 7) were not exposed to cold water, but the habituation group (n = 8) undertook a further six 3 min head-out immersions in stirred water at 10 C of the left-hand side of the body (L). 3. Repeated L immersions reduced (P immersion a reduction (P < 0.05) in the magnitude of the responses evoked was seen in the habituation group but not in the control group, despite both groups having identical skin temperature profiles. 4. It is concluded that the mechanisms involved in producing habituation of the initial responses are located more centrally than the peripheral receptors.

Quantification of competitive value of documents

Directory of Open Access Journals (Sweden)

Pavel Šimek

2009-01-01

Full Text Available The majority of Internet users use the global network to search for different information using fulltext search engines such as Google, Yahoo!, or Seznam. The web presentation operators are trying, with the help of different optimization techniques, to get to the top places in the results of fulltext search engines. Right there is a great importance of Search Engine Optimization and Search Engine Marketing, because normal users usually try links only on the first few pages of the fulltext search engines results on certain keywords and in catalogs they use primarily hierarchically higher placed links in each category. Key to success is the application of optimization methods which deal with the issue of keywords, structure and quality of content, domain names, individual sites and quantity and reliability of backward links. The process is demanding, long-lasting and without a guaranteed outcome. A website operator without advanced analytical tools do not identify the contribution of individual documents from which the entire web site consists. If the web presentation operators want to have an overview of their documents and web site in global, it is appropriate to quantify these positions in a specific way, depending on specific key words. For this purpose serves the quantification of competitive value of documents, which consequently sets global competitive value of a web site. Quantification of competitive values is performed on a specific full-text search engine. For each full-text search engine can be and often are, different results. According to published reports of ClickZ agency or Market Share is according to the number of searches by English-speaking users most widely used Google search engine, which has a market share of more than 80%. The whole procedure of quantification of competitive values is common, however, the initial step which is the analysis of keywords depends on a choice of the fulltext search engine.

In-line monitoring of cocrystallization process and quantification of carbamazepine-nicotinamide cocrystal using Raman spectroscopy and chemometric tools

Science.gov (United States)

Soares, Frederico L. F.; Carneiro, Renato L.

2017-06-01

A cocrystallization process may involve several molecular species, which are generally solid under ambient conditions. Thus, accurate monitoring of different components that might appear during the reaction is necessary, as well as quantification of the final product. This work reports for the first time the synthesis of carbamazepine-nicotinamide cocrystal in aqueous media with a full conversion. The reactions were monitored by Raman spectroscopy coupled with Multivariate Curve Resolution - Alternating Least Squares, and the quantification of the final product among its coformers was performed using Raman spectroscopy and Partial Least Squares regression. The slurry reaction was made in four different conditions: room temperature, 40 °C, 60 °C and 80 °C. The slurry reaction at 80 °C enabled a full conversion of initial substrates into the cocrystal form, using water as solvent for a greener method. The employment of MCR-ALS coupled with Raman spectroscopy enabled to observe the main steps of the reactions, such as drug dissolution, nucleation and crystallization of the cocrystal. The PLS models gave mean errors of cross validation around 2.0 (% wt/wt), and errors of validation between 2.5 and 8.2 (% wt/wt) for all components. These were good results since the spectra of cocrystals and the physical mixture of the coformers present some similar peaks.

Detection and quantification of Leveillula taurica growth in pepper leaves.

Science.gov (United States)

Zheng, Zheng; Nonomura, Teruo; Bóka, Károly; Matsuda, Yoshinori; Visser, Richard G F; Toyoda, Hideyoshi; Kiss, Levente; Bai, Yuling

2013-06-01

Leveillula taurica is an obligate fungal pathogen that causes powdery mildew disease on a broad range of plants, including important crops such as pepper, tomato, eggplant, onion, cotton, and so on. The early stage of this disease is difficult to diagnose and the disease can easily spread unobserved; for example, in pepper and tomato production fields and greenhouses. The objective of this study was to develop a detection and quantification method of L. taurica biomass in pepper leaves with special regard to the early stages of infection. We monitored the development of the disease to time the infection process on the leaf surface as well as inside the pepper leaves. The initial and final steps of the infection taking place on the leaf surface were consecutively observed using a dissecting microscope and a scanning electron microscope. The development of the intercellular mycelium in the mesophyll was followed by light and transmission electron microscopy. A pair of L. taurica-specific primers was designed based on the internal transcribed spacer sequence of L. taurica and used in real-time polymerase chain reaction (PCR) assay to quantify the fungal DNA during infection. The specificity of this assay was confirmed by testing the primer pair with DNA from host plants and also from another powdery mildew species, Oidium neolycopersici, infecting tomato. A standard curve was obtained for absolute quantification of L. taurica biomass. In addition, we tested a relative quantification method by using a plant gene as reference and the obtained results were compared with the visual disease index scoring. The real-time PCR assay for L. taurica provides a valuable tool for detection and quantification of this pathogen in breeding activities as well in plant-microbe interaction studies.

Quantification of free water transport in peritoneal dialysis

NARCIS (Netherlands)

Smit, Watske; Struijk, Dirk G.; Ho-Dac-Pannekeet, Marja M.; Krediet, Raymond T.

2004-01-01

BACKGROUND: In peritoneal dialysis (PD) total net ultrafiltration (NUF) is dependent on transport through small pores and through water channels in the peritoneum. These channels are impermeable to solutes, and therefore, crystalloid osmotic-induced free water transport occurs through them. Several

Ground-water recharge in Fortymile Wash near Yucca Mountain, Nevada, 1992--1993

International Nuclear Information System (INIS)

Savard, C.S.

1994-01-01

Quantification of the ground-water recharge from streamflow in the Fortymile Wash watershed will contribute to regional ground-water studies. Regional ground-water studies are an important component in the studies evaluating the ground-water flow system as a barrier to the potential migration of radionuclides from the potential underground high-level nuclear waste repository. Knowledge gained in understanding the ground-water recharge mechanisms and pathways in the Pah Canyon area, which is 10 km to the northeast of Yucca Mountain, may transfer to Yucca site specific studies. The current data collection network in Fortymile Canyon does not permit quantification of ground-water recharge, however a qualitative understanding of ground-water recharge was developed from these data

Effects of humic acid on DNA quantification with Quantifiler® Human DNA Quantification kit and short tandem repeat amplification efficiency.

Science.gov (United States)

Seo, Seung Bum; Lee, Hye Young; Zhang, Ai Hua; Kim, Hye Yeon; Shin, Dong Hoon; Lee, Soong Deok

2012-11-01

Correct DNA quantification is an essential part to obtain reliable STR typing results. Forensic DNA analysts often use commercial kits for DNA quantification; among them, real-time-based DNA quantification kits are most frequently used. Incorrect DNA quantification due to the presence of PCR inhibitors may affect experiment results. In this study, we examined the alteration degree of DNA quantification results estimated in DNA samples containing a PCR inhibitor by using a Quantifiler® Human DNA Quantification kit. For experiments, we prepared approximately 0.25 ng/μl DNA samples containing various concentrations of humic acid (HA). The quantification results were 0.194-0.303 ng/μl at 0-1.6 ng/μl HA (final concentration in the Quantifiler reaction) and 0.003-0.168 ng/μl at 2.4-4.0 ng/μl HA. Most DNA quantity was undetermined when HA concentration was higher than 4.8 ng/μl HA. The C (T) values of an internal PCR control (IPC) were 28.0-31.0, 36.5-37.1, and undetermined at 0-1.6, 2.4, and 3.2 ng/μl HA. These results indicate that underestimated DNA quantification results may be obtained in the DNA sample with high C (T) values of IPC. Thus, researchers should carefully interpret the DNA quantification results. We additionally examined the effects of HA on the STR amplification by using an Identifiler® kit and a MiniFiler™ kit. Based on the results of this study, it is thought that a better understanding of various effects of HA would help researchers recognize and manipulate samples containing HA.

Quantification of local mobilities

DEFF Research Database (Denmark)

Zhang, Y. B.

2018-01-01

A new method for quantification of mobilities of local recrystallization boundary segments is presented. The quantification is based on microstructures characterized using electron microscopy and on determination of migration velocities and driving forces for local boundary segments. Pure aluminium...... is investigated and the results show that even for a single recrystallization boundary, different boundary segments migrate differently, and the differences can be understood based on variations in mobilities and local deformed microstructures. The present work has important implications for understanding...

Development of Quantification Method for Bioluminescence Imaging

International Nuclear Information System (INIS)

Kim, Hyeon Sik; Min, Jung Joon; Lee, Byeong Il; Choi, Eun Seo; Tak, Yoon O; Choi, Heung Kook; Lee, Ju Young

2009-01-01

Optical molecular luminescence imaging is widely used for detection and imaging of bio-photons emitted by luminescent luciferase activation. The measured photons in this method provide the degree of molecular alteration or cell numbers with the advantage of high signal-to-noise ratio. To extract useful information from the measured results, the analysis based on a proper quantification method is necessary. In this research, we propose a quantification method presenting linear response of measured light signal to measurement time. We detected the luminescence signal by using lab-made optical imaging equipment of animal light imaging system (ALIS) and different two kinds of light sources. One is three bacterial light-emitting sources containing different number of bacteria. The other is three different non-bacterial light sources emitting very weak light. By using the concept of the candela and the flux, we could derive simplified linear quantification formula. After experimentally measuring light intensity, the data was processed with the proposed quantification function. We could obtain linear response of photon counts to measurement time by applying the pre-determined quantification function. The ratio of the re-calculated photon counts and measurement time present a constant value although different light source was applied. The quantification function for linear response could be applicable to the standard quantification process. The proposed method could be used for the exact quantitative analysis in various light imaging equipment with presenting linear response behavior of constant light emitting sources to measurement time

Direct quantification of fatty acids in wet microalgal and yeast biomass via a rapid in situ fatty acid methyl ester derivatization approach.

Science.gov (United States)

Dong, Tao; Yu, Liang; Gao, Difeng; Yu, Xiaochen; Miao, Chao; Zheng, Yubin; Lian, Jieni; Li, Tingting; Chen, Shulin

2015-12-01

Accurate determination of fatty acid contents is routinely required in microalgal and yeast biofuel studies. A method of rapid in situ fatty acid methyl ester (FAME) derivatization directly from wet fresh microalgal and yeast biomass was developed in this study. This method does not require prior solvent extraction or dehydration. FAMEs were prepared with a sequential alkaline hydrolysis (15 min at 85 °C) and acidic esterification (15 min at 85 °C) process. The resulting FAMEs were extracted into n-hexane and analyzed using gas chromatography. The effects of each processing parameter (temperature, reaction time, and water content) upon the lipids quantification in the alkaline hydrolysis step were evaluated with a full factorial design. This method could tolerate water content up to 20% (v/v) in total reaction volume, which equaled up to 1.2 mL of water in biomass slurry (with 0.05-25 mg of fatty acid). There were no significant differences in FAME quantification (p>0.05) between the standard AOAC 991.39 method and the proposed wet in situ FAME preparation method. This fatty acid quantification method is applicable to fresh wet biomass of a wide range of microalgae and yeast species.

Quantification of renal allograft perfusion using arterial spin labeling MRI: initial results.

Science.gov (United States)

Lanzman, Rotem S; Wittsack, Hans-Jörg; Martirosian, Petros; Zgoura, Panagiota; Bilk, Philip; Kröpil, Patric; Schick, Fritz; Voiculescu, Adina; Blondin, Dirk

2010-06-01

To quantify renal allograft perfusion in recipients with stable allograft function and acute decrease in allograft function using nonenhanced flow-sensitive alternating inversion recovery (FAIR)-TrueFISP arterial spin labeling (ASL) MR imaging. Following approval of the local ethics committee, 20 renal allograft recipients were included in this study. ASL perfusion measurement and an anatomical T2-weighted single-shot fast spin-echo (HASTE) sequence were performed on a 1.5-T scanner (Magnetom Avanto, Siemens, Erlangen, Germany). T2-weighted MR urography was performed in patients with suspected ureteral obstruction. Patients were assigned to three groups: group a, 6 patients with stable allograft function over the previous 4 months; group b, 7 patients with good allograft function who underwent transplantation during the previous 3 weeks; group c, 7 allograft recipients with an acute deterioration of renal function. Mean cortical perfusion values were 304.8 +/- 34.4, 296.5 +/- 44.1, and 181.9 +/- 53.4 mg/100 ml/min for groups a, b and c, respectively. Reduction in cortical perfusion in group c was statistically significant. Our results indicate that ASL is a promising technique for nonenhanced quantification of cortical perfusion of renal allografts. Further studies are required to determine the clinical value of ASL for monitoring renal allograft recipients.

Quantification of renal allograft perfusion using arterial spin labeling MRI: initial results

International Nuclear Information System (INIS)

Lanzman, Rotem S.; Wittsack, Hans-Joerg; Bilk, Philip; Kroepil, Patric; Blondin, Dirk; Martirosian, Petros; Schick, Fritz; Zgoura, Panagiota; Voiculescu, Adina

2010-01-01

To quantify renal allograft perfusion in recipients with stable allograft function and acute decrease in allograft function using nonenhanced flow-sensitive alternating inversion recovery (FAIR)-TrueFISP arterial spin labeling (ASL) MR imaging. Following approval of the local ethics committee, 20 renal allograft recipients were included in this study. ASL perfusion measurement and an anatomical T2-weighted single-shot fast spin-echo (HASTE) sequence were performed on a 1.5-T scanner (Magnetom Avanto, Siemens, Erlangen, Germany). T2-weighted MR urography was performed in patients with suspected ureteral obstruction. Patients were assigned to three groups: group a, 6 patients with stable allograft function over the previous 4 months; group b, 7 patients with good allograft function who underwent transplantation during the previous 3 weeks; group c, 7 allograft recipients with an acute deterioration of renal function. Mean cortical perfusion values were 304.8 ± 34.4, 296.5 ± 44.1, and 181.9 ± 53.4 mg/100 ml/min for groups a, b and c, respectively. Reduction in cortical perfusion in group c was statistically significant. Our results indicate that ASL is a promising technique for nonenhanced quantification of cortical perfusion of renal allografts. Further studies are required to determine the clinical value of ASL for monitoring renal allograft recipients. (orig.)

Preliminary Results on Uncertainty Quantification for Pattern Analytics

Energy Technology Data Exchange (ETDEWEB)

Stracuzzi, David John [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Brost, Randolph [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Chen, Maximillian Gene [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Malinas, Rebecca [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Peterson, Matthew Gregor [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Phillips, Cynthia A. [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Robinson, David G. [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Woodbridge, Diane [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States)

2015-09-01

This report summarizes preliminary research into uncertainty quantification for pattern ana- lytics within the context of the Pattern Analytics to Support High-Performance Exploitation and Reasoning (PANTHER) project. The primary focus of PANTHER was to make large quantities of remote sensing data searchable by analysts. The work described in this re- port adds nuance to both the initial data preparation steps and the search process. Search queries are transformed from does the specified pattern exist in the data? to how certain is the system that the returned results match the query? We show example results for both data processing and search, and discuss a number of possible improvements for each.

Modeling Global Water Use for the 21st Century: Water Futures and Solutions (WFaS) Initiative and Its Approaches

Science.gov (United States)

Wada, Y.; Florke, M.; Hanasaki, N.; Eisner, S.; Fischer, G.; Tramberend, S.; Satoh, Y.; van Vliet, M. T. H.; Yillia, P.; Ringler, C.;

The principles of quantification applied to in vivo proton MR spectroscopy

International Nuclear Information System (INIS)

Helms, Gunther

2008-01-01

Following the identification of metabolite signals in the in vivo MR spectrum, quantification is the procedure to estimate numerical values of their concentrations. The two essential steps are discussed in detail: analysis by fitting a model of prior knowledge, that is, the decomposition of the spectrum into the signals of singular metabolites; then, normalization of these signals to yield concentration estimates. Special attention is given to using the in vivo water signal as internal reference

Surfactant-adsorption-induced initial depinning behavior in evaporating water and nanofluid sessile droplets.

Science.gov (United States)

Zhong, Xin; Duan, Fei

2015-05-19

A surfactant-induced autophobic effect has been observed to initiate an intense depinning behavior at the initial stage of evaporation in both pure water and nanofluid sessile droplets. The cationic surfactant adsorbing to the negatively charged silicon wafer makes the solid surface more hydrophobic. The autophobing-induced depinning behavior, leading to an enlarged contact angle and a shortened base diameter, takes place only when the surfactant concentration is below its critical micelle concentration (cmc). The initial spreading degree right before the droplet retraction, the retracting velocity of the contact line, and the duration of the initial droplet retraction are shown to depend negatively on the surfactant concentration below the cmc. An unexpected enhancement in the initial depinning has been found in the nanofluid droplets, possibly resulting from the hydrophilic interplay between the graphite nanoparticle deposition and the surfactant molecules. Such promotion of the initial depinning due to the nanoparticle deposition makes the droplet retract even at a surfactant concentration higher than the cmc (1.5 cmc). The resulting deposition formed in the presence of the depinning behavior has great enhancement for coffee-ring formation as compared to the one free of surfactant, implying that the formation of a coffee ring does not require the pinning of the contact line during the entire drying process.

Quantification in single photon emission computed tomography (SPECT)

International Nuclear Information System (INIS)

Buvat, Irene

2005-01-01

The objective of this lecture is to understand the possibilities and limitations of the quantitative analysis of single photon emission computed tomography (SPECT) images. It is also to identify the conditions to be fulfilled to obtain reliable quantitative measurements from images. Content: 1 - Introduction: Quantification in emission tomography - definition and challenges; quantification biasing phenomena; 2 - quantification in SPECT, problems and correction methods: Attenuation, scattering, un-stationary spatial resolution, partial volume effect, movement, tomographic reconstruction, calibration; 3 - Synthesis: actual quantification accuracy; 4 - Beyond the activity concentration measurement

Development of a VHH-Based Erythropoietin Quantification Assay

DEFF Research Database (Denmark)

Kol, Stefan; Beuchert Kallehauge, Thomas; Adema, Simon

2015-01-01

Erythropoietin (EPO) quantification during cell line selection and bioreactor cultivation has traditionally been performed with ELISA or HPLC. As these techniques suffer from several drawbacks, we developed a novel EPO quantification assay. A camelid single-domain antibody fragment directed against...... human EPO was evaluated as a capturing antibody in a label-free biolayer interferometry-based quantification assay. Human recombinant EPO can be specifically detected in Chinese hamster ovary cell supernatants in a sensitive and pH-dependent manner. This method enables rapid and robust quantification...

Quantification procedures in micro X-ray fluorescence analysis

International Nuclear Information System (INIS)

Kanngiesser, Birgit

2003-01-01

For the quantification in micro X-ray fluorescence analysis standardfree quantification procedures have become especially important. An introduction to the basic concepts of these quantification procedures is given, followed by a short survey of the procedures which are available now and what kind of experimental situations and analytical problems are addressed. The last point is extended by the description of an own development for the fundamental parameter method, which renders the inclusion of nonparallel beam geometries possible. Finally, open problems for the quantification procedures are discussed

Quantification of dextrose in model solution by 1H MR spectroscopy at 1.5T

International Nuclear Information System (INIS)

Lee, Kyung Hee; Cho, Soon Gu; Kim, Hyung Jin; Suh, Chang Hae; Kim, Yong Seong; Lee, Jung Hee

2002-01-01

To evaluate the feasibility of proton magnetic resonance spectroscopy ( 1 H-MRS) using a 1.5T magnetic resonance (MR) imager for quantification of the contents of model solutions. We prepared model solutions of dextrose +water and dextrose +water + ethanol at dextrose concentrations of 0.01% to 50% and 0.01% to 20%, respectively. Using these solutions and a 1.5T MR imager together with a high-resolution nuclear magnetic resonance (NMR) spectroscope, we calculated the ratios of dextrose to water peak, (dextrose +ethanol) to water peak, and (dextrose + ethanol) to ethanol peak, as seen on MR and NMR spectra, analysing the relationships between dextrose concentration and the ratios of peaks, and between the ratios of the peaks seen on MR spectra and those seen on NMR spectra. Changes in the ratios between dextrose concentration and dextrose to water peak, (dextrose + ethanol) to water peak and (dextrose + ethanol) to ethanol peak, as seen on MR spectra, were statistically significant, and there was good linear regression. There was also close correlation between the ratios of the observed on MR and NMR spectra. The results depict the quantification of dextrose concentration according to the ratios of spectral peaks obtained by proton MRS at 1.5T. Using proton MRS at 1.5T, and on the basis of the ratios of spectcal peaks, it was possible to quantify the concentration of dextrose in model solutions of dextrose + water and dextrose + water+ ethanol. The results of this study suggest that for quantifying the contents of biofluids, the use of low-tesla 1 H-MRS is feasible

Predicting the initial freezing point and water activity of meat products from composition data

NARCIS (Netherlands)

Sman, van der R.G.M.; Boer, E.P.J.

2005-01-01

In this paper we predict the water activity and initial freezing point of food products (meat and fish) based on their composition. The prediction is based on thermodynamics (the Clausius-Clapeyron equation, the Ross equation and an approximation of the Pitzer equation). Furthermore, we have taken

An EPGPT-based approach for uncertainty quantification

International Nuclear Information System (INIS)

Wang, C.; Abdel-Khalik, H. S.

2012-01-01

Generalized Perturbation Theory (GPT) has been widely used by many scientific disciplines to perform sensitivity analysis and uncertainty quantification. This manuscript employs recent developments in GPT theory, collectively referred to as Exact-to-Precision Generalized Perturbation Theory (EPGPT), to enable uncertainty quantification for computationally challenging models, e.g. nonlinear models associated with many input parameters and many output responses and with general non-Gaussian parameters distributions. The core difference between EPGPT and existing GPT is in the way the problem is formulated. GPT formulates an adjoint problem that is dependent on the response of interest. It tries to capture via the adjoint solution the relationship between the response of interest and the constraints on the state variations. EPGPT recasts the problem in terms of a smaller set of what is referred to as the 'active' responses which are solely dependent on the physics model and the boundary and initial conditions rather than on the responses of interest. The objective of this work is to apply an EPGPT methodology to propagate cross-sections variations in typical reactor design calculations. The goal is to illustrate its use and the associated impact for situations where the typical Gaussian assumption for parameters uncertainties is not valid and when nonlinear behavior must be considered. To allow this demonstration, exaggerated variations will be employed to stimulate nonlinear behavior in simple prototypical neutronics models. (authors)

Initial Characterization and Water Quality Assessment of Stream Landscapes in Northern Mongolia

Directory of Open Access Journals (Sweden)

Jürgen Hofmann

2015-06-01

Full Text Available A comprehensive monitoring project (2006–2013 provided data on hydrology, hydromorphology, climatology, water physico-chemistry, sedimentology, macroinvertebrate community and fish diversity in the Kharaa River basin in northern Mongolia, thus enabling, for the first time, a detailed characterization of the stream landscapes. Surface waters were categorized into separate “water bodies” according to their identifiable abiotic and biocoenotic features, subsequently creating the smallest management sub-units within the river basin. Following the approach of the European Water Framework Directive (EC-WFD, in order to obtain a good ecological status (GES, four clearly identifiable water bodies in the Kharaa River main channel and seven water bodies consisting of the basin’s tributaries were delineated. The type-specific undisturbed reference state of various aquatic ecosystems was identified in the assessment and used to set standards for restoration goals. With regards to water quality and quantity, the upper reaches of the Kharaa River basin in the Khentii Mountains were classified as having a “good” ecological and chemical status. Compared with these natural reference conditions in the upper reaches, the initial risk assessment identified several “hot spot” regions with impacted water bodies in the middle and lower basin. Subsequently, the affected water bodies are at risk of not obtaining a level of good ecological and/or chemical status for surface waters. Finally, a matrix of cause-response relationships and stressor complexes has been developed and is presented here. The applicability of management approaches is discussed to better foster the development of a sustainable river basin management plan. The application of natural references states offers a sound scientific base to assess the impact of anthropogenic activities across the Kharaa River basin.

Characterization and quantification by mass spectrometry of mobile organic matter from clay rock: influence of the origin and of the sampling

International Nuclear Information System (INIS)

Huclier-Markai, S.; Landesman, C.; Montavon, G.; Grambow, B.; Monteau, F.; Fernandez, A.M.; Vinsot, A.

2012-01-01

probable low velocity, that the inventory was focused on the small organic molecules. The influence of the sampling was studied, notably by performing an experiment in which the argillite core sample was squeezed for 28 days at 175 MPa. The initial water content of the sample was 5.3% and the concentration of organic matter XX mol C/L. The structural features observed for the DOM were different from the percolated water samples either obtained in situ from the POX 1601 borehole or in lab from EST 34399 cores than for the squeezed water sample. The influence of the water collection will be discussed. Additionally, a part of organic matter can be extracted and isolated by HCl/HF treatment. This corresponds to the kerogen fraction which is insoluble in the pore water. 150 Myears solid-bound organic matter of the COx has been already investigated in several studies and originates from a mixture of marine and terrestrial sources. In addition to this, the CCl4 soluble organic fraction (bitumen) has been already characterized by liquid and gas chromatography coupled to mass spectrometry. And finally, a small fraction of the kerogen can be mobilized under alkaline conditions from the COx, a scenario which could happen at the COx/cement interface. This fraction (approx. 0,002 mol C/L) could be transported in the pore water and has been characterized to contain small molecules with carboxylic and phenolic groups. Nonetheless, in order to predict the speciation of metals and radionuclides for a given scenario, Dissolved Organic Matter (DOM) either in the pore water or that could be mobilized from the kerogen fraction must be supported by quantitative data. Thus, the present study is focused the quantification of these low molecular weight compounds using mass spectrometry. Several simple, sensitive, and reproducible methods of quantification, such as internal calibration, calibrated addition of external standard or sequential tandem mass spectrometry, have been developed and are

Pellet-Cladding Mechanical Interaction Failure Threshold for Reactivity Initiated Accidents for Pressurized Water Reactors and Boiling Water Reactors

Energy Technology Data Exchange (ETDEWEB)

Beyer, Carl E. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Geelhood, Kenneth J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

2013-06-01

Pacific Northwest National Laboratory (PNNL) has been requested by the U.S. Nuclear Regulatory Commission to evaluate the reactivity initiated accident (RIA) tests that have recently been performed in the Nuclear Safety Research Reactor (NSRR) and CABRI (French research reactor) on uranium dioxide (UO₂) and mixed uranium and plutonium dioxide (MOX) fuels, and to propose pellet-cladding mechanical interaction (PCMI) failure thresholds for RIA events. This report discusses how PNNL developed PCMI failure thresholds for RIA based on least squares (LSQ) regression fits to the RIA test data from cold-worked stress relief annealed (CWSRA) and recrystallized annealed (RXA) cladding alloys under pressurized water reactor (PWR) hot zero power (HZP) conditions and boiling water reactor (BWR) cold zero power (CZP) conditions.

In vivo MRS metabolite quantification using genetic optimization

Science.gov (United States)

Papakostas, G. A.; Karras, D. A.; Mertzios, B. G.; van Ormondt, D.; Graveron-Demilly, D.

2011-11-01

The in vivo quantification of metabolites' concentrations, revealed in magnetic resonance spectroscopy (MRS) spectra, constitutes the main subject under investigation in this work. Significant contributions based on artificial intelligence tools, such as neural networks (NNs), with good results have been presented lately but have shown several drawbacks, regarding their quantification accuracy under difficult conditions. A general framework that encounters the quantification procedure as an optimization problem, which is solved using a genetic algorithm (GA), is proposed in this paper. Two different lineshape models are examined, while two GA configurations are applied on artificial data. Moreover, the introduced quantification technique deals with metabolite peaks' overlapping, a considerably difficult situation occurring under real conditions. Appropriate experiments have proved the efficiency of the introduced methodology, in artificial MRS data, by establishing it as a generic metabolite quantification procedure.

In vivo MRS metabolite quantification using genetic optimization

International Nuclear Information System (INIS)

Papakostas, G A; Mertzios, B G; Karras, D A; Van Ormondt, D; Graveron-Demilly, D

2011-01-01

The in vivo quantification of metabolites' concentrations, revealed in magnetic resonance spectroscopy (MRS) spectra, constitutes the main subject under investigation in this work. Significant contributions based on artificial intelligence tools, such as neural networks (NNs), with good results have been presented lately but have shown several drawbacks, regarding their quantification accuracy under difficult conditions. A general framework that encounters the quantification procedure as an optimization problem, which is solved using a genetic algorithm (GA), is proposed in this paper. Two different lineshape models are examined, while two GA configurations are applied on artificial data. Moreover, the introduced quantification technique deals with metabolite peaks' overlapping, a considerably difficult situation occurring under real conditions. Appropriate experiments have proved the efficiency of the introduced methodology, in artificial MRS data, by establishing it as a generic metabolite quantification procedure

Electrochemical quantification of the antioxidant capacity of medicinal plants using biosensors.

Science.gov (United States)

Rodríguez-Sevilla, Erika; Ramírez-Silva, María-Teresa; Romero-Romo, Mario; Ibarra-Escutia, Pedro; Palomar-Pardavé, Manuel

2014-08-08

The working area of a screen-printed electrode, SPE, was modified with the enzyme tyrosinase (Tyr) using different immobilization methods, namely entrapment with water-soluble polyvinyl alcohol (PVA), cross-linking using glutaraldehyde (GA), and cross-linking using GA and human serum albumin (HSA); the resulting electrodes were termed SPE/Tyr/PVA, SPE/Tyr/GA and SPE/Tyr/HSA/GA, respectively. These biosensors were characterized by means of amperometry and EIS techniques. From amperometric evaluations, the apparent Michaelis-Menten constant, Km', of each biosensor was evaluated while the respective charge transfer resistance, Rct, was assessed from impedance measurements. It was found that the SPE/Tyr/GA had the smallest Km' (57 ± 7) µM and Rct values. This electrode also displayed both the lowest detection and quantification limits for catechol quantification. Using the SPE/Tyr/GA, the Trolox Equivalent Antioxidant Capacity (TEAC) was determined from infusions prepared with "mirto" (Salvia microphylla), "hHierba dulce" (Lippia dulcis) and "salve real" (Lippia alba), medicinal plants commonly used in Mexico.

Initiation of stress corrosion cracking in pre-stained austenitic stainless steels exposed to primary water

International Nuclear Information System (INIS)

Huguenin, P.

2012-01-01

Austenitic stainless steels are widely used in primary circuits of Pressurized Water Reactors (PWR) plants. However, a limited number of cases of Intergranular Stress Corrosion Cracking (IGSCC) has been detected in cold-worked (CW) areas of non-sensitized austenitic stainless steel components in French PWRs. A previous program launched in the early 2000's identified the required conditions for SCC of cold-worked stainless steels. It was found that a high strain hardening coupled with a cyclic loading favoured SCC. The present study aims at better understanding the role of pre-straining on crack initiation and at developing an engineering model for IGSCC initiation of 304L and 316L stainless steels in primary water. Such model will be based on SCC initiation tests on notched (not pre-cracked) specimens under 'trapezoidal' cyclic loading. The effects of pre-straining (tensile versus cold rolling), cold-work level and strain path on the SCC mechanisms are investigated. Experimental results demonstrate the dominating effect of strain path on SCC susceptibility for all pre-straining levels. Initiation can be understood as crack density and crack depth. A global criterion has been proposed to integrate both aspects of initiation. Maps of SCC initiation susceptibility have been proposed. A critical crack depth between 10 and 20 μm has been demonstrated to define transition between slow propagation and fast propagation for rolled materials. For tensile pre-straining, the critical crack depth is in the range 20 - 50 μm. Experimental evidences support the notion of a KISCC threshold, whose value depends on materials, pre-straining ant load applied. The initiation time has been found to depend on the applied loading as a function of (σ max max/YV) 11,5 . The effect of both strain path and surface hardening is indirectly taken into account via the yield stress. In this study, material differences rely on strain path effect on mechanical properties. As a result, a stress

Chip-Oriented Fluorimeter Design and Detection System Development for DNA Quantification in Nano-Liter Volumes

Directory of Open Access Journals (Sweden)

Da-Sheng Lee

2009-12-01

Full Text Available The chip-based polymerase chain reaction (PCR system has been developed in recent years to achieve DNA quantification. Using a microstructure and miniature chip, the volume consumption for a PCR can be reduced to a nano-liter. With high speed cycling and a low reaction volume, the time consumption of one PCR cycle performed on a chip can be reduced. However, most of the presented prototypes employ commercial fluorimeters which are not optimized for fluorescence detection of such a small quantity sample. This limits the performance of DNA quantification, especially low experiment reproducibility. This study discusses the concept of a chip-oriented fluorimeter design. Using the analytical model, the current study analyzes the sensitivity and dynamic range of the fluorimeter to fit the requirements for detecting fluorescence in nano-liter volumes. Through the optimized processes, a real-time PCR on a chip system with only one nano-liter volume test sample is as sensitive as the commercial real-time PCR machine using the sample with twenty micro-liter volumes. The signal to noise (S/N ratio of a chip system for DNA quantification with hepatitis B virus (HBV plasmid samples is 3 dB higher. DNA quantification by the miniature chip shows higher reproducibility compared to the commercial machine with respect to samples of initial concentrations from 103 to 105 copies per reaction.

Quantification of regional fat volume in rat MRI

Science.gov (United States)

Sacha, Jaroslaw P.; Cockman, Michael D.; Dufresne, Thomas E.; Trokhan, Darren

2003-05-01

Multiple initiatives in the pharmaceutical and beauty care industries are directed at identifying therapies for weight management. Body composition measurements are critical for such initiatives. Imaging technologies that can be used to measure body composition noninvasively include DXA (dual energy x-ray absorptiometry) and MRI (magnetic resonance imaging). Unlike other approaches, MRI provides the ability to perform localized measurements of fat distribution. Several factors complicate the automatic delineation of fat regions and quantification of fat volumes. These include motion artifacts, field non-uniformity, brightness and contrast variations, chemical shift misregistration, and ambiguity in delineating anatomical structures. We have developed an approach to deal practically with those challenges. The approach is implemented in a package, the Fat Volume Tool, for automatic detection of fat tissue in MR images of the rat abdomen, including automatic discrimination between abdominal and subcutaneous regions. We suppress motion artifacts using masking based on detection of implicit landmarks in the images. Adaptive object extraction is used to compensate for intensity variations. This approach enables us to perform fat tissue detection and quantification in a fully automated manner. The package can also operate in manual mode, which can be used for verification of the automatic analysis or for performing supervised segmentation. In supervised segmentation, the operator has the ability to interact with the automatic segmentation procedures to touch-up or completely overwrite intermediate segmentation steps. The operator's interventions steer the automatic segmentation steps that follow. This improves the efficiency and quality of the final segmentation. Semi-automatic segmentation tools (interactive region growing, live-wire, etc.) improve both the accuracy and throughput of the operator when working in manual mode. The quality of automatic segmentation has been

Initial site characterisation of a dissolved hydrocarbon groundwater plume discharging to a surface water environment

International Nuclear Information System (INIS)

Westbrook, S.J.; Commonwealth Scientific and Industrial Research Organisation Land and Water, Wembley, WA; Davis, G.B.; Rayner, J.L.; Fisher, S.J.; Clement, T.P.

2000-01-01

Preliminary characterisation of a dissolved hydrocarbon groundwater plume flowing towards a tidally- and seasonally-forced estuarine system has been completed at a site in Perth, Western Australia. Installation and sampling of multiport boreholes enabled fine scale (0.5-m) vertical definition of hydrocarbon concentrations. Vertical electrical conductivity profiles from multiport and spear probe sampling into the river sediments indicated that two groundwater/river water interfaces or dispersion zones are present: (a) an upper dispersion zone between brackish river water and groundwater, and (b) a lower interface between groundwater and deeper saline water. On-line water level loggers show that near-shore groundwater levels are also strongly influence by tidal oscillation. Results from the initial site characterisation will be used to plan further investigations of contaminated groundwater/surface water interactions and the biodegradation processes occurring at the site

CMOS based image cytometry for detection of phytoplankton in ballast water.

Science.gov (United States)

Pérez, J M; Jofre, M; Martínez, P; Yáñez, M A; Catalan, V; Parker, A; Veldhuis, M; Pruneri, V

2017-02-01

We introduce an image cytometer (I-CYT) for the analysis of phytoplankton in fresh and marine water environments. A linear quantification of cell numbers was observed covering several orders of magnitude using cultures of Tetraselmis and Nannochloropsis measured by autofluorescence in a laboratory environment. We assessed the functionality of the system outside the laboratory by phytoplankton quantification of samples taken from a marine water environment (Dutch Wadden Sea, The Netherlands) and a fresh water environment (Lake Ijssel, The Netherlands). The I-CYT was also employed to study the effects of two ballast water treatment systems (BWTS), based on chlorine electrolysis and UV sterilization, with the analysis including the vitality of the phytoplankton. For comparative study and benchmarking of the I-CYT, a standard flow cytometer was used. Our results prove a limit of detection (LOD) of 10 cells/ml with an accuracy between 0.7 and 0.5 log, and a correlation of 88.29% in quantification and 96.21% in vitality, with respect to the flow cytometry results.

[Models for quantification of fluid saturation in two-phase flow system by light transmission method and its application].

Science.gov (United States)

Zhang, Yan-Hong; Ye, Shu-Jun; Wu, Ji-Chun

2014-06-01

Based on light transmission method in quantification of liquid saturation and its application in two-phase flow system, two groups of sandbox experiments were set up to study the migration of gas or Dense Non-Aqueous Phase Liquids (DNAPLs) in water saturated porous media. The migration of gas or DNAPL was monitored in the study. Two modified Light Intensity-Saturation (LIS) models for water/gas two-phase system were applied and verified by the experiment data. Moreover two new LIS models for NAPL/water system were developed and applied to simulate the DNAPL infiltration experiment data. The gas injection experiment showed that gas moved upward to the top of the sandbox in the form of 'fingering' and finally formed continuous distribution. The results of DNAPL infiltration experiment showed that TCE mainly moved downward as the result of its gravity, eventually formed irregular plume and accumulated at the bottom of the sandbox. The outcomes of two LIS models for water/gas system (WG-A and WG-B) were consistent to the measured data. The results of two LIS models for NAPL/water system (NW-A and NW-B) fit well with the observations, and Model NW-A based on assumption of individual drainage gave better results. It could be a useful reference for quantification of NAPL/water saturation in porous media system.

Emphysema Quantification Using Low Dose Chest CT: Changes in Follow-Up Examinations of Asymptomatic Smokers

Energy Technology Data Exchange (ETDEWEB)

Jang, Eun Ho; Sun, Joo Sung; Kang, Doo Kyung [Dept. of Radiology, Ajou University School of Medicine, Suwon (Korea, Republic of); Park, Kwang Joo; Park, Kyung Joo [Dept. of Pulmolary Medicine, Ajou University School of Medicine, Suwon (Korea, Republic of)

2012-01-15

To evaluate the changes of emphysema quantification in a follow-up low dose CT compared with pulmonary function test (PFT) results in asymptomatic smokers. We selected 66 asymptomatic smokers (> 40 years old) who underwent a follow-up low dose CT at least one year after the first CT as well as PFT within the same time period. Emphysema quantification was performed using an automated measurement software and an emphysema index (EI) was calculated using multiple threshold values (-970--900 HU). The interval change of EI ({Delta} EI) was compared with the change in the PFT values. Mean follow-up %forced expiratory volume in 1 second (88.1), %forced vital capacity (FVC) (89.5) and forced expiratory flow between 25 and 75% of vital capacity (3.21) were significantly lower compared with the values of initial tests (93.3, 93.1, 3.48). The mean EIs (2.4-25.6%) increased on follow-up CTs compared with initial EIs (2.1-24.5%), though the increase was not statistically significant. In a group with a follow-up period of 2 years or more (n = 32), EI significantly increased when using -900 HU as the threshold. The ({Delta} EIs were poorly correlated with the ({Delta} PFT values, but significantly correlated with ({Delta} FVC (r = -0.32--0.27). Emphysema quantification using low dose CT was not effective for the evaluation of short-term changes in less than a 2-year period, but may be used for long term follow-up series in asymptomatic smokers.

Balancing the Energy-Water Nexus

Energy Technology Data Exchange (ETDEWEB)

Dell, Jan

2010-09-15

Optimizing the complex tradeoffs in the Energy-Water Nexus requires quantification of energy use, carbon emitted and water consumed. Water is consumed in energy production and is often a constraint to operations. More global attention and investment has been made on reducing carbon emissions than on water management. Review of public reporting by the largest 107 global power producers and 50 companies in the oil/gas industry shows broad accounting on carbon emissions but only partial reporting on water consumption metrics. If the Energy-Water Nexus is to be balanced, then water must also be measured to be optimally managed with carbon emissions.

The role of PET quantification in cardiovascular imaging.

Science.gov (United States)

Slomka, Piotr; Berman, Daniel S; Alexanderson, Erick; Germano, Guido

2014-08-01

Positron Emission Tomography (PET) has several clinical and research applications in cardiovascular imaging. Myocardial perfusion imaging with PET allows accurate global and regional measurements of myocardial perfusion, myocardial blood flow and function at stress and rest in one exam. Simultaneous assessment of function and perfusion by PET with quantitative software is currently the routine practice. Combination of ejection fraction reserve with perfusion information may improve the identification of severe disease. The myocardial viability can be estimated by quantitative comparison of fluorodeoxyglucose ( 18 FDG) and rest perfusion imaging. The myocardial blood flow and coronary flow reserve measurements are becoming routinely included in the clinical assessment due to enhanced dynamic imaging capabilities of the latest PET/CT scanners. Absolute flow measurements allow evaluation of the coronary microvascular dysfunction and provide additional prognostic and diagnostic information for coronary disease. Standard quantitative approaches to compute myocardial blood flow from kinetic PET data in automated and rapid fashion have been developed for 13 N-ammonia, 15 O-water and 82 Rb radiotracers. The agreement between software methods available for such analysis is excellent. Relative quantification of 82 Rb PET myocardial perfusion, based on comparisons to normal databases, demonstrates high performance for the detection of obstructive coronary disease. New tracers, such as 18 F-flurpiridaz may allow further improvements in the disease detection. Computerized analysis of perfusion at stress and rest reduces the variability of the assessment as compared to visual analysis. PET quantification can be enhanced by precise coregistration with CT angiography. In emerging clinical applications, the potential to identify vulnerable plaques by quantification of atherosclerotic plaque uptake of 18 FDG and 18 F-sodium fluoride tracers in carotids, aorta and coronary arteries

Radon 222 and Tritium in the identification and quantification of NAPL contamination in ground water. 1. Theoretical principles; Radon 222 y Tritio en la identificacion y cuantificacion de la contaminacion por hidrocarburos (LFNA) en las aguas subterraneas. 1. Principios teoricos

Energy Technology Data Exchange (ETDEWEB)

Molerio Leon, LF [Inversiones Gamma, La Habana (Cuba); Fernandez Gomez, IM; Carrazana Gonzalez, J A, E-mail: especialistaprincipal@gmail.com [Centro de Proteccion e Higiene de las Radiaciones (CPHR), La Habana (Cuba)

2012-07-01

This is the first of two papers presenting the basic concepts and the main results of the application of environmental Rn{sup 222a}nd Tritium in the identification and quantification of Non-Aqueous Phase Liquids contamination of Cuban ground waters and their relation with sea water intrusion and/or spills of produced waters. The interpretation technique is based on the partition properties of the tracers involved and in the geochemical affinity of some major and minor constituents of the ground waters occurring beneath the exploration and production facilities of the Northern Havana-Matanzas Heavy Oil Belt. The second paper in this series discusses several cases of interaction among the fresh water aquifer, the sea, the sea water-fresh water interface and oil contamination.

Extravascular Lung Water and Acute Lung Injury

Directory of Open Access Journals (Sweden)

Ritesh Maharaj

2012-01-01

Full Text Available Acute lung injury carries a high burden of morbidity and mortality and is characterised by nonhydrostatic pulmonary oedema. The aim of this paper is to highlight the role of accurate quantification of extravascular lung water in diagnosis, management, and prognosis in “acute lung injury” and “acute respiratory distress syndrome”. Several studies have verified the accuracy of both the single and the double transpulmonary thermal indicator techniques. Both experimental and clinical studies were searched in PUBMED using the term “extravascular lung water” and “acute lung injury”. Extravascular lung water measurement offers information not otherwise available by other methods such as chest radiography, arterial blood gas, and chest auscultation at the bedside. Recent data have highlighted the role of extravascular lung water in response to treatment to guide fluid therapy and ventilator strategies. The quantification of extravascular lung water may predict mortality and multiorgan dysfunction. The limitations of the dilution method are also discussed.

Supporting diverse data providers in the open water data initiative: Communicating water data quality and fitness of use

Science.gov (United States)

Larsen, Sara; Hamilton, Stuart; Lucido, Jessica M.; Garner, Bradley D.; Young, Dwane

2016-01-01

Shared, trusted, timely data are essential elements for the cooperation needed to optimize economic, ecologic, and public safety concerns related to water. The Open Water Data Initiative (OWDI) will provide a fully scalable platform that can support a wide variety of data from many diverse providers. Many of these will be larger, well-established, and trusted agencies with a history of providing well-documented, standardized, and archive-ready products. However, some potential partners may be smaller, distributed, and relatively unknown or untested as data providers. The data these partners will provide are valuable and can be used to fill in many data gaps, but can also be variable in quality or supplied in nonstandardized formats. They may also reflect the smaller partners' variable budgets and missions, be intermittent, or of unknown provenance. A challenge for the OWDI will be to convey the quality and the contextual “fitness” of data from providers other than the most trusted brands. This article reviews past and current methods for documenting data quality. Three case studies are provided that describe processes and pathways for effective data-sharing and publication initiatives. They also illustrate how partners may work together to find a metadata reporting threshold that encourages participation while maintaining high data integrity. And lastly, potential governance is proposed that may assist smaller partners with short- and long-term participation in the OWDI.

Stable isotope dilution quantification of mutagens in cooked foods by combined liquid chromatography-thermospray mass spectrometry

International Nuclear Information System (INIS)

Yamaizumi, Ziro; Kasai, Hiroshi; Nishimura, Susumu; Edmonds, C.G.; McCloskey, J.A.

1986-01-01

A method of general applicability for the detection and quantification of mutagens in cooked foods at the ppb level is presented. A minimal sample prefractionation is employed and [Me- 2 H 3 ]-labeled analogs of the compounds of interest are added for identification and quantification of mutagens by accurate measurement of chromatographic retention (K') in reverse-phase high-performance liquid chromatography (HPLC), and by measurement of the ratio of response of the protonated molecular ions of analyte and internal standard by directly coupled liquid chromatography-mass spectrometry (LC/MS). Initial application is demonstrated in the analysis of 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) and 2-amino-3,4-dimethylimidazo[4,5-f]quinoline (MelQ) in broiled salmon. (Auth.)

Thermostability of biological systems: fundamentals, challenges, and quantification.

Science.gov (United States)

He, Xiaoming

2011-01-01

This review examines the fundamentals and challenges in engineering/understanding the thermostability of biological systems over a wide temperature range (from the cryogenic to hyperthermic regimen). Applications of the bio-thermostability engineering to either destroy unwanted or stabilize useful biologicals for the treatment of diseases in modern medicine are first introduced. Studies on the biological responses to cryogenic and hyperthermic temperatures for the various applications are reviewed to understand the mechanism of thermal (both cryo and hyperthermic) injury and its quantification at the molecular, cellular and tissue/organ levels. Methods for quantifying the thermophysical processes of the various applications are then summarized accounting for the effect of blood perfusion, metabolism, water transport across cell plasma membrane, and phase transition (both equilibrium and non-equilibrium such as ice formation and glass transition) of water. The review concludes with a summary of the status quo and future perspectives in engineering the thermostability of biological systems.

Thermodynamic behavior of erythritol in aqueous solutions and in gelatine gels and its quantification

International Nuclear Information System (INIS)

Tyapkova, Oxana; Bader-Mittermaier, Stephanie; Schweiggert-Weisz, Ute

2013-01-01

Highlights: • Differential scanning calorimetry as a method to determine erythritol crystallization. • Determination of crystallization using solution enthalpy. • Erythritol crystallization influenced by area of air–water-interfaces. • DSC method is applicable for both aqueous solutions and gels. • Adaption of DSC method to other, more complex food matrices is possible. - Abstract: As crystallization of erythritol can cause a sandy mouth-feel in sugar-free products, strategies to avoid crystallization or adaption of food formulation should be elucidated. However, until now erythritol crystallization was only quantified in aqueous solutions, but not in model food systems. Differential scanning calorimetry (DSC) is a simple method for the quantification of phase transition in various systems. However, no methods for the quantification of crystallization from aqueous systems based on DSC have been published until now. In the present study DSC was found to be suitable for the quantification of crystallization using supersaturated aqueous solutions of erythritol and erythritol containing gelatine gels for the first time. The developed method was validated by comparing the crystallization values determined by gravimetric measurement of erythritol crystals and the values obtained by DSC. No significant differences (p < 0.05) have been obtained between the results of the two methods if an appropriate design of measurements was applied. Additionally, the method was adapted to gelatine gels to elucidate the transferability to model food systems. Hence, the method is suitable for quantification of the amount of erythritol crystals present in aqueous solutions and gels, respectively

Digital PCR for direct quantification of viruses without DNA extraction.

Science.gov (United States)

Pavšič, Jernej; Žel, Jana; Milavec, Mojca

2016-01-01

DNA extraction before amplification is considered an essential step for quantification of viral DNA using real-time PCR (qPCR). However, this can directly affect the final measurements due to variable DNA yields and removal of inhibitors, which leads to increased inter-laboratory variability of qPCR measurements and reduced agreement on viral loads. Digital PCR (dPCR) might be an advantageous methodology for the measurement of virus concentrations, as it does not depend on any calibration material and it has higher tolerance to inhibitors. DNA quantification without an extraction step (i.e. direct quantification) was performed here using dPCR and two different human cytomegalovirus whole-virus materials. Two dPCR platforms were used for this direct quantification of the viral DNA, and these were compared with quantification of the extracted viral DNA in terms of yield and variability. Direct quantification of both whole-virus materials present in simple matrices like cell lysate or Tris-HCl buffer provided repeatable measurements of virus concentrations that were probably in closer agreement with the actual viral load than when estimated through quantification of the extracted DNA. Direct dPCR quantification of other viruses, reference materials and clinically relevant matrices is now needed to show the full versatility of this very promising and cost-efficient development in virus quantification.

Identification of flow paths and quantification of return flow volumes and timing at field scale

Science.gov (United States)

Claes, N.; Paige, G. B.; Parsekian, A.

2017-12-01

Flood irrigation, which constitutes a large part of agricultural water use, accounts for a significant amount of the water that is diverted from western streams. Return flow, the portion of the water applied to irrigated areas that returns to the stream, is important for maintaining base flows in streams and ecological function of riparian zones and wetlands hydrologically linked with streams. Prediction of timing and volumes of return flow during and after flood irrigation pose a challenge due to the heterogeneity of pedogenic and soil physical factors that influence vadose zone processes. In this study, we quantify volumes of return flow and potential pathways in the subsurface through a vadose zone flow model that is informed by both hydrological and geophysical observations in a Bayesian setting. We couple a two-dimensional vadose zone flow model through a Bayesian Markov Chain Monte Carlo approach with time lapse ERT, borehole NMR datasets that are collected during and after flood irrigation experiments, and soil physical lab analysis. The combination of both synthetic models and field observations leads to flow path identification and allows for quantification of volumes and timing and associated uncertainties of subsurface return that stems from flood irrigation. The quantification of the impact of soil heterogeneity enables us to translate these results to other sites and predict return flow under different soil physical settings. This is key when managing irrigation water resources and predictions of outcomes of different scenarios have to be evaluated.

A methodological framework to support the initiation, design and institutionalization of participatory modeling processes in water resources management

Science.gov (United States)

Halbe, Johannes; Pahl-Wostl, Claudia; Adamowski, Jan

2018-01-01

Multiple barriers constrain the widespread application of participatory methods in water management, including the more technical focus of most water agencies, additional cost and time requirements for stakeholder involvement, as well as institutional structures that impede collaborative management. This paper presents a stepwise methodological framework that addresses the challenges of context-sensitive initiation, design and institutionalization of participatory modeling processes. The methodological framework consists of five successive stages: (1) problem framing and stakeholder analysis, (2) process design, (3) individual modeling, (4) group model building, and (5) institutionalized participatory modeling. The Management and Transition Framework is used for problem diagnosis (Stage One), context-sensitive process design (Stage Two) and analysis of requirements for the institutionalization of participatory water management (Stage Five). Conceptual modeling is used to initiate participatory modeling processes (Stage Three) and ensure a high compatibility with quantitative modeling approaches (Stage Four). This paper describes the proposed participatory model building (PMB) framework and provides a case study of its application in Québec, Canada. The results of the Québec study demonstrate the applicability of the PMB framework for initiating and designing participatory model building processes and analyzing barriers towards institutionalization.

Study on light water reactor fuel behavior under reactivity initiated accident condition in TREAT

International Nuclear Information System (INIS)

Ohnishi, Nobuaki; Ishijima, Kiyomi; Ochiai, Masaaki; Tanzawa, Sadamitsu; Uemura, Mutsumi

1981-05-01

This report reviews the results of the fuel failure experiments performed in TREAT in the U.S.A. simulating Reactivity Initiated Accidents. One of the main purposes of the TREAT experiments is the study of the fuel failure behavior, and the other is the study of the molten fuel-water coolant interaction and the consequent hydrogen behavior. This report mainly shows the results of the TREAT experiments studying the fuel failure behavior in Light Water Reactor, and then it describes the fuel failure threshold and the fuel failure mechanism, considering the results of the photographic experiments of the fuel failure behavior with transparent capsules. (author)

On phonons and water flow enhancement in carbon nanotubes

DEFF Research Database (Denmark)

Cruz-Chu, Eduardo R.; Papadopoulou, Ermioni; Walther, Jens Honore

2017-01-01

The intriguing physics of water transport through carbon nanotubes (CNTs) has motivated numerous studies, reporting flow rates higher than those estimated by continuum models1. The quantification of water transport in CNTs remains unresolved, however, with flow rates reported by different...

The quantification of risk and tourism

Directory of Open Access Journals (Sweden)

Piet Croucamp

2014-01-01

Full Text Available Tourism in South Africa comprises 9.5% of Gross Domestic Product (GDP, but remains an underresearched industry, especially regarding the quantification of the risks prevailing in the social, political and economic environment in which the industry operates. Risk prediction, extrapolation forecasting is conducted largely in the context of a qualitative methodology. This article reflects on the quantification of social constructs as variables of risk in the tourism industry with reference to South Africa. The theory and methodology of quantification is briefly reviewed and the indicators of risk are conceptualized and operationalized. The identified indicators are scaled in indices for purposes of quantification. Risk assessments and the quantification of constructs rely heavily on the experience - often personal - of the researcher and this scholarly endeavour is, therefore, not inclusive of all possible identified indicators of risk. It is accepted that tourism in South Africa is an industry comprising of a large diversity of sectors, each with a different set of risk indicators and risk profiles. The emphasis of this article is thus on the methodology to be applied to a risk profile. A secondary endeavour is to provide for clarity about the conceptual and operational confines of risk in general, as well as how quantified risk relates to the tourism industry. The indices provided include both domesticand international risk indicators. The motivation for the article is to encourage a greater emphasis on quantitative research in our efforts to understand and manage a risk profile for the tourist industry.

Suspended sediment dynamics in a large-scale turbidity current: Direct measurements from the deep-water Congo Canyon

Science.gov (United States)

Simmons, S.; Azpiroz, M.; Cartigny, M.; Clare, M. A.; Parsons, D. R.; Sumner, E.; Talling, P. J.

2016-12-01

Turbidity currents that transport sediment to the deep ocean deposit a greater volume of sediment than any other process on Earth. To date, only a handful of studies have directly measured turbidity currents, with flow durations ranging from a few minutes to a few hours. Our understanding of turbidity current dynamics is therefore largely derived from scaled laboratory experiments and numerical modelling. Recent years have seen the first field-scale measurements of depth-resolved velocity profiles, but sediment concentration (a key parameter for turbidity currents) remains elusive. Here, we present high resolution measurements of deep-water turbidity currents from the Congo Canyon; one of the world's largest submarine canyons. Direct measurements using acoustic Doppler current profilers (ADCPs) show that flows can last for many days, rather than hours as seen elsewhere, and provide the first quantification of concentration and grain size within deep-water turbidity currents.Velocity and backscatter were measured at 5 second intervals by an ADCP suspended 80 m above the canyon floor, at 2000 m water depth. A novel inversion method using multiple ADCP frequencies enabled quantification of sediment concentration and grain size within the flows. We identify high concentrations of coarse sediment within a thin frontal cell, which outruns a thicker, trailing body. Thus, the flows grow in length while propagating down-canyon. This is distinct from classical models and other field-scale measurements of turbidity currents. The slow-moving body is dominated by suspended fine-grained sediment. The body mixes with the surrounding fluid leaving diffuse clouds of sediment that persist for days after initial entrainment. Ambient tidal flow also controls the mixing within the body and the surrounding fluid. Our results provide a new quantification of suspended sediment within flows and the interaction with the surrounding fluid.

Quantification of pathogen inactivation efficacy by free chlorine disinfection of drinking water for QMRA.

Science.gov (United States)

Petterson, S R; Stenström, T A

2015-09-01

To support the implementation of quantitative microbial risk assessment (QMRA) for managing infectious risks associated with drinking water systems, a simple modeling approach for quantifying Log10 reduction across a free chlorine disinfection contactor was developed. The study was undertaken in three stages: firstly, review of the laboratory studies published in the literature; secondly, development of a conceptual approach to apply the laboratory studies to full-scale conditions; and finally implementation of the calculations for a hypothetical case study system. The developed model explicitly accounted for variability in residence time and pathogen specific chlorine sensitivity. Survival functions were constructed for a range of pathogens relying on the upper bound of the reported data transformed to a common metric. The application of the model within a hypothetical case study demonstrated the importance of accounting for variable residence time in QMRA. While the overall Log10 reduction may appear high, small parcels of water with short residence time can compromise the overall performance of the barrier. While theoretically simple, the approach presented is of great value for undertaking an initial assessment of a full-scale disinfection contactor based on limited site-specific information.

Quantification of water usage at a South African platinum processing plant

OpenAIRE

Haggard, EL; Sheridan, CM; Harding, KG

2015-01-01

The mining industry utilises 3% of the total water withdrawn in South Africa and is one of the industries responsible for the deterioration of water quality in South Africa. Mine water requirements can be reduced with correct implementation and/ or improvement of current mine water management strategies. Any reduction in mine water requirements will reduce the demand on current water resources and hence the impact on water quality. The direct water footprint for 2 concentrators, a smelter and...

Quantification of micropollutants in some water sources in northern ...

African Journals Online (AJOL)

ADOWIE PERE

their waste assimilative capacity is a threat to both ecology of the ecosystems and health of the ... pesticide residues in river water and sediments from northern Tanzania. .... Pangani River Basin Water Board (PBWB). ..... release of Ni in the environment are forest fires and .... Atlantic Ocean: natural and human influences.

Electrochemical Quantification of the Antioxidant Capacity of Medicinal Plants Using Biosensors

Directory of Open Access Journals (Sweden)

Erika Rodríguez-Sevilla

2014-08-01

Full Text Available The working area of a screen-printed electrode, SPE, was modified with the enzyme tyrosinase (Tyr using different immobilization methods, namely entrapment with water-soluble polyvinyl alcohol (PVA, cross-linking using glutaraldehyde (GA, and cross-linking using GA and human serum albumin (HSA; the resulting electrodes were termed SPE/Tyr/PVA, SPE/Tyr/GA and SPE/Tyr/HSA/GA, respectively. These biosensors were characterized by means of amperometry and EIS techniques. From amperometric evaluations, the apparent Michaelis-Menten constant, Km′, of each biosensor was evaluated while the respective charge transfer resistance, Rct, was assessed from impedance measurements. It was found that the SPE/Tyr/GA had the smallest Km′ (57 ± 7 µM and Rct values. This electrode also displayed both the lowest detection and quantification limits for catechol quantification. Using the SPE/Tyr/GA, the Trolox Equivalent Antioxidant Capacity (TEAC was determined from infusions prepared with “mirto” (Salvia microphylla, “hHierba dulce” (Lippia dulcis and “salve real” (Lippia alba, medicinal plants commonly used in Mexico.

Electrochemical Quantification of the Antioxidant Capacity of Medicinal Plants Using Biosensors

Science.gov (United States)

Rodríguez-Sevilla, Erika; Ramírez-Silva, María-Teresa; Romero-Romo, Mario; Ibarra-Escutia, Pedro; Palomar-Pardavé, Manuel

2014-01-01

The working area of a screen-printed electrode, SPE, was modified with the enzyme tyrosinase (Tyr) using different immobilization methods, namely entrapment with water-soluble polyvinyl alcohol (PVA), cross-linking using glutaraldehyde (GA), and cross-linking using GA and human serum albumin (HSA); the resulting electrodes were termed SPE/Tyr/PVA, SPE/Tyr/GA and SPE/Tyr/HSA/GA, respectively. These biosensors were characterized by means of amperometry and EIS techniques. From amperometric evaluations, the apparent Michaelis-Menten constant, Km′, of each biosensor was evaluated while the respective charge transfer resistance, Rct, was assessed from impedance measurements. It was found that the SPE/Tyr/GA had the smallest Km′ (57 ± 7) μM and Rct values. This electrode also displayed both the lowest detection and quantification limits for catechol quantification. Using the SPE/Tyr/GA, the Trolox Equivalent Antioxidant Capacity (TEAC) was determined from infusions prepared with “mirto” (Salvia microphylla), “hHierba dulce” (Lippia dulcis) and “salve real” (Lippia alba), medicinal plants commonly used in Mexico. PMID:25111237

Quantification of pancreatic exocrine function with secretin-enhanced magnetic resonance cholangiopancreatography: normal values and short-term effects of pancreatic duct drainage procedures in chronic pancreatitis. Initial results

International Nuclear Information System (INIS)

Bali, M.A.; Sztantics, A.; Metens, T.; Matos, C.; Arvanitakis, M.; Delhaye, M.; Deviere, J.

2005-01-01

The aim of this study was to quantify pancreatic exocrine function in normal subjects and in patients with chronic pancreatitis (CP) before and after pancreatic duct drainage procedures (PDDP) with dynamic secretin-enhanced magnetic resonance (MR) cholangiopancreatography (S-MRCP). Pancreatic exocrine secretions [quantified by pancreatic flow output (PFO) and total excreted volume (TEV)] were quantified twice in ten healthy volunteers and before and after treatment in 20 CP patients (18 classified as severe, one as moderate, and one as mild according to the Cambridge classification). PFO and TEV were derived from a linear regression between MR-calculated volumes and time. In all subjects, pancreatic exocrine fluid volume initially increased linearly with time during secretin stimulation. In controls, the mean PFO and TEV were 6.8 ml/min and 97 ml; intra-individual deviations were 0.8 ml/min and 16 ml. In 10/20 patients with impaired exocrine secretions before treatment, a significant increase of PFO and TEV was observed after treatment (P<0.05); 3/20 patients presented post-procedural acute pancreatitis and a reduced PFO. The S-MRCP quantification method used in the present study is reproducible and provides normal values for PFO and TEV in the range of those obtained from previous published intubation studies. The initial results in CP patients have demonstrated non-invasively a significant short-term improvement of PFO and TEV after PDDP. (orig.)

Ranking filter methods for concentrating pathogens in lake water

Science.gov (United States)

Accurately comparing filtration methods for concentrating waterborne pathogens is difficult because of two important water matrix effects on recovery measurements, the effect on PCR quantification and the effect on filter performance. Regarding the first effect, we show how to create a control water...

A water stress index based on water balance modelling for discrimination of grapevine quality and yield

Directory of Open Access Journals (Sweden)

Rémi Gaudin

2014-01-01

Significance and impact of the study: This water stress index is a valuable tool for explaining the variations in grape yield and quality among various locations and years because it reflects the vineyard water stress history in relation to rainfall regime and soil conditions. Improvement would come from the simulation of FTSW during winter, notably for soils of high Total Transpirable Soil Water. One potential application is the quantification of water stress change brought by irrigation in Mediterranean vineyards, and its relation to grapevine production.

(1) H-MRS processing parameters affect metabolite quantification

DEFF Research Database (Denmark)

Bhogal, Alex A; Schür, Remmelt R; Houtepen, Lotte C

2017-01-01

investigated the influence of model parameters and spectral quantification software on fitted metabolite concentration values. Sixty spectra in 30 individuals (repeated measures) were acquired using a 7-T MRI scanner. Data were processed by four independent research groups with the freedom to choose their own...... + NAAG/Cr + PCr and Glu/Cr + PCr, respectively. Metabolite quantification using identical (1) H-MRS data was influenced by processing parameters, basis sets and software choice. Locally preferred processing choices affected metabolite quantification, even when using identical software. Our results......Proton magnetic resonance spectroscopy ((1) H-MRS) can be used to quantify in vivo metabolite levels, such as lactate, γ-aminobutyric acid (GABA) and glutamate (Glu). However, there are considerable analysis choices which can alter the accuracy or precision of (1) H-MRS metabolite quantification...

Analysis of loss-of-coolant accidents in pressurized water reactors

International Nuclear Information System (INIS)

Moldaschl, H.

1982-01-01

Analysis of loss-of-coolant accidents in pressurized water reactors -Quantification of the influence of leak size, control assembly worth, boron concentration and initial power by a dynamic operations criterion. Neutronic and thermohydraulic behaviour of a pressurized water reactor during a loss-of-coolant accident (LOCA) is mainly influenced by -change of fuel temperature, -void in the primary coolant. They cause a local stabilization of power density, that means that also in the case of small leaks local void is the main stabilization effect. As a consequence the increase of fuel temperature remains very small even under extremely hypothetical assumptions: small leak, positive reactivity feedback (positive coolant temperature coefficient, negative density coefficient) at the beginning of the accident and all control assemblies getting stuck. Restrictions which have been valid up to now for permitted start-up conditions to fulfill inherent safety requirements can be lossened substantially by a dynamic operations criterion. Burnable poisons for compensation of reactivity theorefore can be omitted. (orig.)

Benchmarking common quantification strategies for large-scale phosphoproteomics

DEFF Research Database (Denmark)

Hogrebe, Alexander; von Stechow, Louise; Bekker-Jensen, Dorte B

2018-01-01

Comprehensive mass spectrometry (MS)-based proteomics is now feasible, but reproducible quantification remains challenging, especially for post-translational modifications such as phosphorylation. Here, we compare the most popular quantification techniques for global phosphoproteomics: label-free...

High-Throughput Thermodynamic Modeling and Uncertainty Quantification for ICME

Science.gov (United States)

Otis, Richard A.; Liu, Zi-Kui

2017-05-01

One foundational component of the integrated computational materials engineering (ICME) and Materials Genome Initiative is the computational thermodynamics based on the calculation of phase diagrams (CALPHAD) method. The CALPHAD method pioneered by Kaufman has enabled the development of thermodynamic, atomic mobility, and molar volume databases of individual phases in the full space of temperature, composition, and sometimes pressure for technologically important multicomponent engineering materials, along with sophisticated computational tools for using the databases. In this article, our recent efforts will be presented in terms of developing new computational tools for high-throughput modeling and uncertainty quantification based on high-throughput, first-principles calculations and the CALPHAD method along with their potential propagations to downstream ICME modeling and simulations.

Detection and quantification of classic and emerging viruses by skimmed-milk flocculation and PCR in river water from two geographical areas.

Science.gov (United States)

Calgua, Byron; Fumian, Tulio; Rusiñol, Marta; Rodriguez-Manzano, Jesus; Mbayed, Viviana A; Bofill-Mas, Silvia; Miagostovich, Marize; Girones, Rosina

2013-05-15

Molecular techniques and virus concentration methods have shown that previously unknown viruses are shed by humans and animals, and may be transmitted by sewage-contaminated water. In the present study, 10-L river-water samples from urban areas in Barcelona, Spain and Rio Janeiro, Brazil, have been analyzed to evaluate the viral dissemination of human viruses, validating also a low-cost concentration method for virus quantification in fresh water. Three viral groups were analyzed: (i) recently reported viruses, klassevirus (KV), asfarvirus-like virus (ASFLV), and the polyomaviruses Merkel cell (MCPyV), KI (KIPyV) and WU (WUPyV); (ii) the gastroenteritis agents noroviruses (NoV) and rotaviruses (RV); and (iii) the human fecal viral indicators in water, human adenoviruses (HAdV) and JC polyomaviruses (JCPyV). Virus detection was based on nested and quantitative PCR assays. For KV and ASFLV, nested PCR assays were developed for the present study. The method applied for virus concentration in fresh water samples is a one-step procedure based on a skimmed-milk flocculation procedure described previously for seawater. Using spiked river water samples, inter- and intra-laboratory assays showed a viral recovery rate of about 50% (20-95%) for HAdV, JCPyV, NoV and RV with a coefficient of variation ≤ 50%. HAdV and JCPyV were detected in 100% (12/12) of the river samples from Barcelona and Rio de Janeiro. Moreover, NoV GGII was detected in 83% (5/6) and MCPyV in 50% (3/6) of the samples from Barcelona, whereas none of the other viruses tested were detected. NoV GGII was detected in 33% (2/6), KV in 33% (2/6), ASFLV in 17% (1/6) and MCPyV in 50% (3/6) of the samples from Rio de Janeiro, whereas KIPyV and WUPyV were not detected. RV were only analyzed in Rio de Janeiro and resulted positive in 67% (4/6) of the samples. The procedure applied here to river water represents a useful, straightforward and cost-effective method that could be applied in routine water quality testing

Cinnamon Bark, Water Soluble Cinnamon Extract, and Metformin as Initial Treatment for Type 2 Diabetes Mellitus: A Randomized, Controlled Trial

Science.gov (United States)

2016-12-14

Cinnamon Extract, and Metformin as Initial Treatment for Type 2 Diabetes Mellitus : A Randomized, Controlled Trial. Paul Crawford, MD Clinical Investigation...Title: “Cinnamon Bark, Water-Soluble Cinnamon Extract, and Metformin as Initial Treatment for Type 2 Diabetes Mellitus : A Randomized, Controlled...as initial treatment for Type 2 diabetes mellitus : A randomized, controlled trial. IRB #: FWH20110004H Principal Investigator (PI) Rank / Civ

Quantification of Cannabinoid Content in Cannabis

Science.gov (United States)

Tian, Y.; Zhang, F.; Jia, K.; Wen, M.; Yuan, Ch.

2015-09-01

Cannabis is an economically important plant that is used in many fields, in addition to being the most commonly consumed illicit drug worldwide. Monitoring the spatial distribution of cannabis cultivation and judging whether it is drug- or fiber-type cannabis is critical for governments and international communities to understand the scale of the illegal drug trade. The aim of this study was to investigate whether the cannabinoids content in cannabis could be spectrally quantified using a spectrometer and to identify the optimal wavebands for quantifying the cannabinoid content. Spectral reflectance data of dried cannabis leaf samples and the cannabis canopy were measured in the laboratory and in the field, respectively. Correlation analysis and the stepwise multivariate regression method were used to select the optimal wavebands for cannabinoid content quantification based on the laboratory-measured spectral data. The results indicated that the delta-9-tetrahydrocannabinol (THC) content in cannabis leaves could be quantified using laboratory-measured spectral reflectance data and that the 695 nm band is the optimal band for THC content quantification. This study provides prerequisite information for designing spectral equipment to enable immediate quantification of THC content in cannabis and to discriminate drug- from fiber-type cannabis based on THC content quantification in the field.

Exploiting multicompartment effects in triple-echo steady-state T2 mapping for fat fraction quantification.

Science.gov (United States)

Liu, Dian; Steingoetter, Andreas; Curcic, Jelena; Kozerke, Sebastian

2018-01-01

To investigate and exploit the effect of intravoxel off-resonance compartments in the triple-echo steady-state (TESS) sequence without fat suppression for T 2 mapping and to leverage the results for fat fraction quantification. In multicompartment tissue, where at least one compartment is excited off-resonance, the total signal exhibits periodic modulations as a function of echo time (TE). Simulated multicompartment TESS signals were synthesized at various TEs. Fat emulsion phantoms were prepared and scanned at the same TE combinations using TESS. In vivo knee data were obtained with TESS to validate the simulations. The multicompartment effect was exploited for fat fraction quantification in the stomach by acquiring TESS signals at two TE combinations. Simulated and measured multicompartment signal intensities were in good agreement. Multicompartment effects caused erroneous T 2 offsets, even at low water-fat ratios. The choice of TE caused T 2 variations of as much as 28% in cartilage. The feasibility of fat fraction quantification to monitor the decrease of fat content in the stomach during digestion is demonstrated. Intravoxel off-resonance compartments are a confounding factor for T 2 quantification using TESS, causing errors that are dependent on the TE. At the same time, off-resonance effects may allow for efficient fat fraction mapping using steady-state imaging. Magn Reson Med 79:423-429, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Development of a Rapid Cartilage Damage Quantification Method for the Lateral Tibiofemoral Compartment Using Magnetic Resonance Images: Data from the Osteoarthritis Initiative

Directory of Open Access Journals (Sweden)

Ming Zhang

2015-01-01

Full Text Available The purpose of this study was to expand and validate the cartilage damage index (CDI to detect cartilage damage in the lateral tibiofemoral compartment. We used an iterative 3-step process to develop and validate the lateral CDI: development (100 knees, testing (80 knees, and validation (100 knees. The validation set included 100 knees from the Osteoarthritis Initiative that was enriched to include all grades of lateral joint space narrowing (JSN, 0–3. Measurement of the CDI was rapid at 7.4 (s.d. 0.73 minutes per knee pair (baseline and follow-up of one knee. The intratester reliability is good (intraclass correlation coefficient (3, 1 model = 0.86 to 0.98. At baseline, knees with greater KL grade and lateral JSN had a lower mean CDI (i.e., greater cartilage damage. Baseline lateral CDI is associated with both lateral JSW (r=0.81 to 0.85, p<0.01 and HKA (r=-0.30 to −0.33, p<0.05. The SRM is good (lateral femur SRM = −0.76; lateral tibia SRM = −0.73; lateral tibiofemoral total SRM = −0.87. The lateral tibiofemoral CDI quantification allows for rapid evaluation and is reliable and responsive, with good construct validity. It may be an efficient method to measure lateral tibiofemoral articular cartilage in large clinical and epidemiologic studies.

Rapid and fully automated Measurement of Water Vapor Sorption Isotherms

DEFF Research Database (Denmark)

Arthur, Emmanuel; Tuller, Markus; Møldrup, Per

2014-01-01

Eminent environmental challenges such as remediation of contaminated sites, the establishment and maintenance of nuclear waste repositories, or the design of surface landfill covers all require accurate quantification of the soil water characteristic at low water contents. Furthermore, several...

An electron microscopy based method for the detection and quantification of nanomaterial number concentration in environmentally relevant media

Energy Technology Data Exchange (ETDEWEB)

Prasad, A. [School of Geography, Earth and Environmental Sciences, College of Life and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT (United Kingdom); Lead, J.R., E-mail: jlead@mailbox.sc.edu [School of Geography, Earth and Environmental Sciences, College of Life and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT (United Kingdom); Center for Environmental Nanoscience and Risk, Department of Environmental Health Sciences, Arnold School of Public Health, University South Carolina, Columbia 29208, SC (United States); Baalousha, M., E-mail: mbaalous@mailbox.sc.edu [Center for Environmental Nanoscience and Risk, Department of Environmental Health Sciences, Arnold School of Public Health, University South Carolina, Columbia 29208, SC (United States)

2015-12-15

force and time) to insure full sample recovery. This TEM sampling method is key to the accurate quantification of NM number concentration, and therefore to improving our understanding of environmental fate, behavior, effects and dose of NMs. - Highlights: • Fully quantitative sampling method for analysis of NMs by TEM is presented • The method combines ultracentrifugation and TEM grid functionalization • Initial validation has been performed using AuNMs in pure and synthetic EA waters • The TEM sampling method enables direct measurement of NM number concentration • The TEM sampling method enables detection of NMs in complex natural samples.

An electron microscopy based method for the detection and quantification of nanomaterial number concentration in environmentally relevant media

International Nuclear Information System (INIS)

Prasad, A.; Lead, J.R.; Baalousha, M.

2015-01-01

force and time) to insure full sample recovery. This TEM sampling method is key to the accurate quantification of NM number concentration, and therefore to improving our understanding of environmental fate, behavior, effects and dose of NMs. - Highlights: • Fully quantitative sampling method for analysis of NMs by TEM is presented • The method combines ultracentrifugation and TEM grid functionalization • Initial validation has been performed using AuNMs in pure and synthetic EA waters • The TEM sampling method enables direct measurement of NM number concentration • The TEM sampling method enables detection of NMs in complex natural samples

Quantification of abdominal aortic deformation after EVAR

Science.gov (United States)

Demirci, Stefanie; Manstad-Hulaas, Frode; Navab, Nassir

2009-02-01

Quantification of abdominal aortic deformation is an important requirement for the evaluation of endovascular stenting procedures and the further refinement of stent graft design. During endovascular aortic repair (EVAR) treatment, the aortic shape is subject to severe deformation that is imposed by medical instruments such as guide wires, catheters, and, the stent graft. This deformation can affect the flow characteristics and morphology of the aorta which have been shown to be elicitors for stent graft failures and be reason for reappearance of aneurysms. We present a method for quantifying the deformation of an aneurysmatic aorta imposed by an inserted stent graft device. The outline of the procedure includes initial rigid alignment of the two abdominal scans, segmentation of abdominal vessel trees, and automatic reduction of their centerline structures to one specified region of interest around the aorta. This is accomplished by preprocessing and remodeling of the pre- and postoperative aortic shapes before performing a non-rigid registration. We further narrow the resulting displacement fields to only include local non-rigid deformation and therefore, eliminate all remaining global rigid transformations. Finally, deformations for specified locations can be calculated from the resulting displacement fields. In order to evaluate our method, experiments for the extraction of aortic deformation fields are conducted on 15 patient datasets from endovascular aortic repair (EVAR) treatment. A visual assessment of the registration results and evaluation of the usage of deformation quantification were performed by two vascular surgeons and one interventional radiologist who are all experts in EVAR procedures.

Precursor Evolution and Stress Corrosion Cracking Initiation of Cold-Worked Alloy 690 in Simulated Pressurized Water Reactor Primary Water

Energy Technology Data Exchange (ETDEWEB)

Zhai, Ziqing [Pacific Northwest National Laboratory, 622 Horn Rapids Road, P.O. Box 999, Richland, Washington 99352.; Toloczko, Mychailo [Pacific Northwest National Laboratory, 622 Horn Rapids Road, P.O. Box 999, Richland, Washington 99352.; Kruska, Karen [Pacific Northwest National Laboratory, 622 Horn Rapids Road, P.O. Box 999, Richland, Washington 99352.; Bruemmer, Stephen [Pacific Northwest National Laboratory, 622 Horn Rapids Road, P.O. Box 999, Richland, Washington 99352.

2017-05-22

Stress corrosion crack initiation of two thermally-treated, cold-worked (CW) alloy 690 (UNS N06690) materials was investigated in 360oC simulated PWR primary water using constant load tensile (CLT) tests and blunt notch compact tension (BNCT) tests equipped with direct current potential drop (DCPD) for in-situ detection of cracking. SCC initiation was not detected by DCPD for either the 21% or 31%CW CLT specimens loaded at their yield stress after ~9,220 hours, however intergranular (IG) precursor damage and isolated surface cracks were observed on the specimens. The two 31%CW BNCT specimens loaded at moderate stress intensity after several cyclic loading ramps showed DCPD-indicated crack initiation after 10,400 hours of exposure at constant stress intensity, which was resulted from significant growth of IG cracks. The 21%CW BNCT specimens only exhibited isolated small IG surface cracks and showed no apparent DCPD change throughout the test. Post-test cross-section examinations revealed many grain boundary (GB) nano-cavities in the bulk of all the CLT and BNCT specimens particularly for the 31%CW materials. Cavities were also found along GBs extending to the surface suggesting an important role in crack nucleation. This paper provides an overview of the evolution of GB cavities and discusses their effects on crack initiation in CW alloy 690.

Colour thresholding and objective quantification in bioimaging

Science.gov (United States)

Fermin, C. D.; Gerber, M. A.; Torre-Bueno, J. R.

1992-01-01

Computer imaging is rapidly becoming an indispensable tool for the quantification of variables in research and medicine. Whilst its use in medicine has largely been limited to qualitative observations, imaging in applied basic sciences, medical research and biotechnology demands objective quantification of the variables in question. In black and white densitometry (0-256 levels of intensity) the separation of subtle differences between closely related hues from stains is sometimes very difficult. True-colour and real-time video microscopy analysis offer choices not previously available with monochrome systems. In this paper we demonstrate the usefulness of colour thresholding, which has so far proven indispensable for proper objective quantification of the products of histochemical reactions and/or subtle differences in tissue and cells. In addition, we provide interested, but untrained readers with basic information that may assist decisions regarding the most suitable set-up for a project under consideration. Data from projects in progress at Tulane are shown to illustrate the advantage of colour thresholding over monochrome densitometry and for objective quantification of subtle colour differences between experimental and control samples.

Quantification analysis of CT for aphasic patients

International Nuclear Information System (INIS)

Watanabe, Shunzo; Ooyama, Hiroshi; Hojo, Kei; Tasaki, Hiroichi; Hanazono, Toshihide; Sato, Tokijiro; Metoki, Hirobumi; Totsuka, Motokichi; Oosumi, Noboru.

1987-01-01

Using a microcomputer, the locus and extent of the lesions, as demonstrated by computed tomography, for 44 aphasic patients with various types of aphasia were superimposed onto standardized matrices, composed of 10 slices with 3000 points (50 by 60). The relationships between the foci of the lesions and types of aphasia were investigated on the slices numbered 3, 4, 5, and 6 using a quantification theory, Type 3 (pattern analysis). Some types of regularities were observed on Slices 3, 4, 5, and 6. The group of patients with Broca's aphasia and the group with Wernicke's aphasia were generally separated on the 1st component and the 2nd component of the quantification theory, Type 3. On the other hand, the group with global aphasia existed between the group with Broca's aphasia and that with Wernicke's aphasia. The group of patients with amnestic aphasia had no specific findings, and the group with conduction aphasia existed near those with Wernicke's aphasia. The above results serve to establish the quantification theory, Type 2 (discrimination analysis) and the quantification theory, Type 1 (regression analysis). (author)

Cues, quantification, and agreement in language comprehension.

Science.gov (United States)

Tanner, Darren; Bulkes, Nyssa Z

2015-12-01

We investigated factors that affect the comprehension of subject-verb agreement in English, using quantification as a window into the relationship between morphosyntactic processes in language production and comprehension. Event-related brain potentials (ERPs) were recorded while participants read sentences with grammatical and ungrammatical verbs, in which the plurality of the subject noun phrase was either doubly marked (via overt plural quantification and morphological marking on the noun) or singly marked (via only plural morphology on the noun). Both acceptability judgments and the ERP data showed heightened sensitivity to agreement violations when quantification provided an additional cue to the grammatical number of the subject noun phrase, over and above plural morphology. This is consistent with models of grammatical comprehension that emphasize feature prediction in tandem with cue-based memory retrieval. Our results additionally contrast with those of prior studies that showed no effects of plural quantification on agreement in language production. These findings therefore highlight some nontrivial divergences in the cues and mechanisms supporting morphosyntactic processing in language production and comprehension.

Quantification of variability in trichome patterns

Directory of Open Access Journals (Sweden)

Bettina eGreese

2014-11-01

Full Text Available While pattern formation is studied in various areas of biology, little is known about the intrinsic noise leading to variations between individual realizations of the pattern. One prominent example for de novo pattern formation in plants is the patterning of trichomes on Arabidopsis leaves, which involves genetic regulation and cell-to-cell communication. These processes are potentially variable due to , e.g., the abundance of cell components or environmental conditions. To elevate the understanding of the regulatory processes underlying the pattern formation it is crucial to quantitatively analyze the variability in naturally occurring patterns. Here, we review recent approaches towards characterization of noise on trichome initiation. We present methods for the quantification of spatial patterns, which are the basis for data-driven mathematical modeling and enable the analysis of noise from different sources. Besides the insight gained on trichome formation, the examination of observed trichome patterns also shows that highly regulated biological processes can be substantially affected by variability.

Performance of the Real-Q EBV Quantification Kit for Epstein-Barr Virus DNA Quantification in Whole Blood.

Science.gov (United States)

Huh, Hee Jae; Park, Jong Eun; Kim, Ji Youn; Yun, Sun Ae; Lee, Myoung Keun; Lee, Nam Yong; Kim, Jong Won; Ki, Chang Seok

2017-03-01

There has been increasing interest in standardized and quantitative Epstein-Barr virus (EBV) DNA testing for the management of EBV disease. We evaluated the performance of the Real-Q EBV Quantification Kit (BioSewoom, Korea) in whole blood (WB). Nucleic acid extraction and real-time PCR were performed by using the MagNA Pure 96 (Roche Diagnostics, Germany) and 7500 Fast real-time PCR system (Applied Biosystems, USA), respectively. Assay sensitivity, linearity, and conversion factor were determined by using the World Health Organization international standard diluted in EBV-negative WB. We used 81 WB clinical specimens to compare performance of the Real-Q EBV Quantification Kit and artus EBV RG PCR Kit (Qiagen, Germany). The limit of detection (LOD) and limit of quantification (LOQ) for the Real-Q kit were 453 and 750 IU/mL, respectively. The conversion factor from EBV genomic copies to IU was 0.62. The linear range of the assay was from 750 to 10⁶ IU/mL. Viral load values measured with the Real-Q assay were on average 0.54 log₁₀ copies/mL higher than those measured with the artus assay. The Real-Q assay offered good analytical performance for EBV DNA quantification in WB.

Quantification of low fat fractions at 3T: comparison of water-fat imaging toolbox and MR spectroscopy

Czech Academy of Sciences Publication Activity Database

Kořínek, Radim; Gajdošík, M.; Trattnig, S.; Krššák, M.

2016-01-01

Roč. 29, S1 (2016), s. 203 E-ISSN 1352-8661. [ESMRMB 2016 Congress. 29.09.2016-01.10.2016, Vienna] R&D Projects: GA ČR GA13-09086S; GA MŠk(CZ) LO1212 Institutional support: RVO:68081731 Keywords : MR spectroscopy * quantification of low fat fractions Subject RIV: BH - Optics, Masers, Lasers

Water Loss Management: Tools and Methods for Developing Countries

OpenAIRE

Mutikanga, H.E.

2012-01-01

Water utilities in developing countries are struggling to provide customers with a reliable level of service due to their peculiar water distribution characteristics including poorly zoned networks with irregular supply operating under restricted budgets. These unique conditions demand unique tools and methods for water loss control. Water loss management: Tools and Methods for Developing Countries provide a decision support toolbox (appropriate tools and methodologies) for assessing, quantif...

Development of the quantification procedures for in situ XRF analysis

International Nuclear Information System (INIS)

Kump, P.; Necemer, M.; Rupnik, P.

2005-01-01

For in situ XRF applications, two excitation systems (radioisotope and tube excited) and an X ray spectrometer based on an Si-PIN detector were assembled and used. The radioisotope excitation system with an Am-241 source was assembled into a prototype of a compact XRF analyser PEDUZO-01, which is also applicable in field work. The existing quantification software QAES (quantitative analysis of environmental samples) was assessed to be adequate also in field work. This QAES software was also integrated into a new software attached to the developed XRF analyser PEDUZO-01, which includes spectrum acquisition, spectrum analysis and quantification and runs in the LABVIEW environment. In a process of assessment of the Si-PIN based X ray spectrometers and QAES quantification software in field work, a comparison was made with the results obtained by the standard Si(Li) based spectrometer. The results of this study prove that the use of this spectrometer is adequate for field work. This work was accepted for publication in X ray Spectrometry. Application of a simple sample preparation of solid samples was studied in view of the analytical results obtained. It has been established that under definite conditions the results are not very different from the ones obtained by the homogenized sample pressed into the pellet. The influence of particle size and mineralogical effects on quantitative results was studied. A simple sample preparation kit was proposed. Sample preparation for the analysis of water samples by precipitation with APDC and aerosol analysis using a dichotomous sampler were also adapted and used in the field work. An adequate sample preparation kit was proposed. (author)

Furan quantification in bread crust: development of a simple and sensitive method using headspace-trap GC-MS.

Science.gov (United States)

Huault, Lucie; Descharles, Nicolas; Rega, Barbara; Bistac, Sophie; Bosc, Véronique; Giampaoli, Pierre

2016-01-01

To study reactivity in bread crust during the baking process in the pan, we followed furan mainly resulting from Maillard and caramelisation reactions in cereal products. Furan quantification is commonly performed with automatic HS-static GC-MS. However, we showed that the automatic HS-trap GC-MS method can improve the sensitivity of the furan quantification. Indeed, this method allowed the LOD to be decreased from 0.3 ng g(-1) with HS-static mode to 0.03 ng g(-1) with HS-trap mode under these conditions. After validation of this method for furan quantification in bread crust, a difference between the crust extracted from the bottom and from the sides of the bread was evident. The quantity of furan in the bottom crust was five times lower than in the side crust, revealing less reactivity on the bottom than on the sides of the bread during the baking process in the pan. Differences in water content may explain these variations in reactivity.

Bathymetric survey and estimation of the water balance of Lake ...

African Journals Online (AJOL)

Quantification of the water balance components and bathymetric survey is very crucial for sustainable management of lake waters. This paper focuses on the bathymetry and the water balance of the crater Lake Ardibo, recently utilized for irrigation. The bathymetric map of the lake is established at a contour interval of 10 ...

Analytical Methods for Quantification of Vitamin D and Implications for Research and Clinical Practice.

Science.gov (United States)

Stokes, Caroline S; Lammert, Frank; Volmer, Dietrich A

2018-02-01

A plethora of contradictory research surrounds vitamin D and its influence on health and disease. This may, in part, result from analytical difficulties with regard to measuring vitamin D metabolites in serum. Indeed, variation exists between analytical techniques and assays used for the determination of serum 25-hydroxyvitamin D. Research studies into the effects of vitamin D on clinical endpoints rely heavily on the accurate assessment of vitamin D status. This has important implications, as findings from vitamin D-related studies to date may potentially have been hampered by the quantification techniques used. Likewise, healthcare professionals are increasingly incorporating vitamin D testing and supplementation regimens into their practice, and measurement errors may be also confounding the clinical decisions. Importantly, the Vitamin D Standardisation Programme is an initiative that aims to standardise the measurement of vitamin D metabolites. Such a programme is anticipated to eliminate the inaccuracies surrounding vitamin D quantification. Copyright© 2018, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

Selective Distance-Based K+ Quantification on Paper-Based Microfluidics.

Science.gov (United States)

Gerold, Chase T; Bakker, Eric; Henry, Charles S

2018-04-03

In this study, paper-based microfluidic devices (μPADs) capable of K + quantification in aqueous samples, as well as in human serum, using both colorimetric and distance-based methods are described. A lipophilic phase containing potassium ionophore I (valinomycin) was utilized to achieve highly selective quantification of K + in the presence of Na + , Li + , and Mg 2+ ions. Successful addition of a suspended lipophilic phase to a wax printed paper-based device is described and offers a solution to current approaches that rely on organic solvents, which damage wax barriers. The approach provides an avenue for future alkali/alkaline quantification utilizing μPADs. Colorimetric spot tests allowed for K + quantification from 0.1-5.0 mM using only 3.00 μL of sample solution. Selective distance-based quantification required small sample volumes (6.00 μL) and gave responses sensitive enough to distinguish between 1.0 and 2.5 mM of sample K + . μPADs using distance-based methods were also capable of differentiating between 4.3 and 6.9 mM K + in human serum samples. Distance-based methods required no digital analysis, electronic hardware, or pumps; any steps required for quantification could be carried out using the naked eye.

Synthesis and Review: Advancing agricultural greenhouse gas quantification

International Nuclear Information System (INIS)

Olander, Lydia P; Wollenberg, Eva; Tubiello, Francesco N; Herold, Martin

2014-01-01

Reducing emissions of agricultural greenhouse gases (GHGs), such as methane and nitrous oxide, and sequestering carbon in the soil or in living biomass can help reduce the impact of agriculture on climate change while improving productivity and reducing resource use. There is an increasing demand for improved, low cost quantification of GHGs in agriculture, whether for national reporting to the United Nations Framework Convention on Climate Change (UNFCCC), underpinning and stimulating improved practices, establishing crediting mechanisms, or supporting green products. This ERL focus issue highlights GHG quantification to call attention to our existing knowledge and opportunities for further progress. In this article we synthesize the findings of 21 papers on the current state of global capability for agricultural GHG quantification and visions for its improvement. We conclude that strategic investment in quantification can lead to significant global improvement in agricultural GHG estimation in the near term. (paper)

Numerical simulation of water exit of an initially fully submerged buoyant spheroid in an axisymmetric flow

Energy Technology Data Exchange (ETDEWEB)

Ni, B Y; Wu, G X, E-mail: g.wu@ucl.ac.uk [College of Shipbuilding Engineering, Harbin Engineering University, Harbin 150001 (China)

2017-08-15

The free water exit of an initially fully submerged buoyant spheroid in an axisymmetric flow, which is driven by the difference between the vertical fluid force and gravity, is investigated. The fluid is assumed to be incompressible and inviscid, and the flow to be irrotational. The velocity potential theory is adopted together with fully nonlinear boundary conditions on the free surface. The surface tension is neglected and the pressure is taken as constant on the free surface. The acceleration of the body at each time step is obtained as part of the solution. Its nonlinear mutual dependence on the fluid force is decoupled through the auxiliary function method. The free-surface breakup by body penetration and water detachment from the body are treated through numerical conditions. The slender body theory based on the zero potential assumption on the undisturbed flat free surface is adopted, through which a condition for full water exit of a spheroid is obtained. Comparison is made between the results from the slender body theory and from the fully nonlinear theory through the boundary-element method, and good agreement is found when the spheroid is slender. Extensive case studies are undertaken to investigate the effects of body density, dimensions and the initial submergence. (paper)

The influence of initial conditions of water-entry on ricochet phenomenon

Energy Technology Data Exchange (ETDEWEB)

Guoming, Chen; Jinfu, Feng; Junhua, Hu; An, Liu [Aeronautics and Astronautics Engineering College, Air Force Engineering University, Xi’an, 710038 (China); Yongli, Li, E-mail: 18192081790@163.com [Engineering University of CAPF, Xi’an 710086 (China)

2017-08-15

The ricochet phenomenon of the water-entry of the water–air crossing vehicle is investigated by both experiments and numerical simulations. Experiments and numerical simulations of the water-entry process with different inclination angles, velocities, and attack angles are performed. The whole ricochet progress and the changing rules of angular acceleration, angular velocity, and displacement are obtained and analyzed by numerical simulation for a deeper understanding of ricochet phenomenon. The experiment is carried out to study the underwater trajectory by changing the initial condition only. The experimental results are in good agreement with the simulations. The results show that: (1) A small inclination angle causes the trajectory to bend upward, favoring the ricochet phenomenon. (2) A large velocity value also favors the ricochet phenomenon, making it occur more easily and quickly, but lower velocities are insufficient to provide the necessary kinetic energy. (3) The ricochet phenomenon is more likely to occur under a negative attack angle that causes the trajectory to bend upward, but a positive angle balances the underwater trajectory. These results can provide guidance to design a new water–air cross vehicle. (paper)

A RP-HPLC method for quantification of diclofenac sodium released from biological macromolecules.

Science.gov (United States)

Bhattacharya, Shiv Sankar; Banerjee, Subham; Ghosh, Ashoke Kumar; Chattopadhyay, Pronobesh; Verma, Anurag; Ghosh, Amitava

2013-07-01

Interpenetrating network (IPN) microbeads of sodium carboxymethyl locust bean gum (SCMLBG) and sodium carboxymethyl cellulose (SCMC) containing diclofenac sodium (DS), a nonsteroidal anti-inflammatory drug, were prepared by single water-in-water (w/w) emulsion gelation process using AlCl3 as cross-linking agent in a complete aqueous environment. Pharmacokinetic study of these IPN microbeads was then carried out by a simple and feasible high-performance liquid chromatographic method with UV detection which was developed and validated for the quantification of diclofenac sodium in rabbit plasma. The chromatographic separation was carried out in a Hypersil BDS, C18 column (250 mm × 4.6 mm; 5 m). The mobile phase was a mixture of acetonitrile and methanol (70:30, v/v) at a flow rate of 1.0 ml/min. The UV detection was set at 276 nm. The extraction recovery of diclofenac sodium in plasma of three quality control (QC) samples was ranged from 81.52% to 95.29%. The calibration curve was linear in the concentration range of 20-1000 ng/ml with the correlation coefficient (r(2)) above 0.9951. The method was specific and sensitive with the limit of quantification of 20 ng/ml. In stability tests, diclofenac sodium in rabbit plasma was stable during storage and assay procedure. Copyright © 2013. Published by Elsevier B.V.

Critical points of DNA quantification by real-time PCR--effects of DNA extraction method and sample matrix on quantification of genetically modified organisms.

Science.gov (United States)

Cankar, Katarina; Stebih, Dejan; Dreo, Tanja; Zel, Jana; Gruden, Kristina

2006-08-14

Real-time PCR is the technique of choice for nucleic acid quantification. In the field of detection of genetically modified organisms (GMOs) quantification of biotech products may be required to fulfil legislative requirements. However, successful quantification depends crucially on the quality of the sample DNA analyzed. Methods for GMO detection are generally validated on certified reference materials that are in the form of powdered grain material, while detection in routine laboratories must be performed on a wide variety of sample matrixes. Due to food processing, the DNA in sample matrixes can be present in low amounts and also degraded. In addition, molecules of plant origin or from other sources that affect PCR amplification of samples will influence the reliability of the quantification. Further, the wide variety of sample matrixes presents a challenge for detection laboratories. The extraction method must ensure high yield and quality of the DNA obtained and must be carefully selected, since even components of DNA extraction solutions can influence PCR reactions. GMO quantification is based on a standard curve, therefore similarity of PCR efficiency for the sample and standard reference material is a prerequisite for exact quantification. Little information on the performance of real-time PCR on samples of different matrixes is available. Five commonly used DNA extraction techniques were compared and their suitability for quantitative analysis was assessed. The effect of sample matrix on nucleic acid quantification was assessed by comparing 4 maize and 4 soybean matrixes. In addition 205 maize and soybean samples from routine analysis were analyzed for PCR efficiency to assess variability of PCR performance within each sample matrix. Together with the amount of DNA needed for reliable quantification, PCR efficiency is the crucial parameter determining the reliability of quantitative results, therefore it was chosen as the primary criterion by which to

La quantification en Kabiye: une approche linguistique | Pali ...

African Journals Online (AJOL)

... which is denoted by lexical quantifiers. Quantification with specific reference is provided by different types of linguistic units (nouns, numerals, adjectives, adverbs, ideophones and verbs) in arguments/noun phrases and in the predicative phrase in the sense of Chomsky. Keywords: quantification, class, number, reference, ...

Quantification of tumour initiating effect of jute batching oil and its distillates over mouse skin.

Science.gov (United States)

Agarwal, R; Kumar, S; Shukla, Y; Antony, M; Mehrotra, N K

1985-09-30

In order to identify the tumour initiating constituent(s) of a mineral oil, jute batching oil (JBO), used in the processing of jute fibres, it was fractionally distilled in various boiling range fractions. The latter were then subjected to in vivo assessment of their aryl hydrocarbon hydroxylase (AHH) inducing potential in mouse epidermis. Fractions with almost similar AHH inducing potential were regrouped and studied for their tumour initiating potential over mouse skin following two-stage initiation-promotion protocol and using 12-O-tetradecanoyl phorbol-13-acetate (TPA) as tumour promoter. It was noticed that: (1) JBO as initiator, provoked local development of benign skin tumours over mouse back; (2) fractions of JBO boiling below 335 degrees C and above 399 degrees C accounted for most of the tumour initiating potential of the oil; (3) the histological features of the tumours (i.e. benign papillomas and keratoacanthomas) initiated by these fractions were similar to those developed after being initiated with unfractionated or reconstituted JBO; (4) removal of these fractions from JBO may be attempted which could decontaminate the batch oil from most of its tumorigenic components and make it safer for industrial use.

Measuring Soil Water Potential for Water Management in Agriculture: A Review

Directory of Open Access Journals (Sweden)

Marco Bittelli

2010-05-01

Full Text Available Soil water potential is a soil property affecting a large variety of bio-physical processes, such as seed germination, plant growth and plant nutrition. Gradients in soil water potential are the driving forces of water movement, affecting water infiltration, redistribution, percolation, evaporation and plants’ transpiration. The total soil water potential is given by the sum of gravity, matric, osmotic and hydrostatic potential. The quantification of the soil water potential is necessary for a variety of applications both in agricultural and horticultural systems such as optimization of irrigation volumes and fertilization. In recent decades, a large number of experimental methods have been developed to measure the soil water potential, and a large body of knowledge is now available on theory and applications. In this review, the main techniques used to measure the soil water potential are discussed. Subsequently, some examples are provided where the measurement of soil water potential is utilized for a sustainable use of water resources in agriculture.

Quantification of severe accident source terms of a Westinghouse 3-loop plant

International Nuclear Information System (INIS)

Lee Min; Ko, Y.-C.

2008-01-01

Integrated severe accident analysis codes are used to quantify the source terms of the representative sequences identified in PSA study. The characteristics of these source terms depend on the detail design of the plant and the accident scenario. A historical perspective of radioactive source term is provided. The grouping of radionuclides in different source terms or source term quantification tools based on TID-14844, NUREG-1465, and WASH-1400 is compared. The radionuclides release phenomena and models adopted in the integrated severe accident analysis codes of STCP and MAAP4 are described. In the present study, the severe accident source terms for risk quantification of Maanshan Nuclear Power Plant of Taiwan Power Company are quantified using MAAP 4.0.4 code. A methodology is developed to quantify the source terms of each source term category (STC) identified in the Level II PSA analysis of the plant. The characteristics of source terms obtained are compared with other source terms. The plant analyzed employs a Westinghouse designed 3-loop pressurized water reactor (PWR) with large dry containment

Peripheral arterial vasodilation hypothesis: a proposal for the initiation of renal sodium and water retention in cirrhosis

DEFF Research Database (Denmark)

Schrier, R W; Arroyo, V; Bernardi, M

1988-01-01

Renal sodium and water retention and plasma volume expansion have been shown to precede ascites formation in experimental cirrhosis. The classical "underfilling" theory, in which ascites formation causes hypovolemia and initiates secondary renal sodium and water retention, thus seems unlikely...... with cirrhosis. Arterial vasodilators and arteriovenous fistula are other examples in which renal sodium and water retention occur secondary to a decreased filling of the arterial vascular tree. An increase in cardiac output and hormonal stimulation are common features of cirrhosis, arteriovenous fistula...... and drug-induced peripheral arterial vasodilation. However, a predilection for the retained sodium and water to transudate into the abdominal cavity occurs with cirrhosis because of the presence of portal hypertension. The Peripheral Arterial Vasodilation Hypothesis also explains the continuum from...

Application of radioanalytical methods in the quantification of solute transport in plants

International Nuclear Information System (INIS)

Hornik, M.

2016-01-01

The present habilitation thesis is elaborated as a compilation of published scientific papers supplemented with a commentary. The primary objective of the work was to bring the results and knowledge applicable to the further development of application possibilities of nuclear analytical chemistry, especially in the field of radioindication methods and application of positron emitters in connection with the positron emission tomography (PET) as well. In the work, these methods and techniques are developed mainly in the context of the solution of environmental issues related to the analysis and remediation of contaminated or degraded environment (water and soil), but also partially in the field of plant production or plant research. In terms of the achieved results and knowledge, the work is divided into three separated sections. The first part is dedicated to the application of radioindication methods, as well as others, non-radioanalytical methods and approaches in the characterization of plant biomass (biomass of terrestrial and aquatic mosses, and waste plant biomass) as alternative sorbents served to the separation and removal of (radio)toxic metals from contaminated or waste waters, as well as in the quantification and description of the sorption processes proceed under conditions of batch or continuous flow systems. The second part describes the results concerning on the quantification and visual description of the processes of (radio)toxic metals and microelements uptake and translocation in plant tissues using radioisotopes (β- and γ-emitters) of these metals and application of the methods of direct gamma spectrometry and autoradiography as well. The main aim of these experiments was to evaluate the possibilities of utilization of selected plant species in phytoremediation of contaminated soils and waters, as well as the possibilities affecting the effectiveness of uptake and translocation of these metals in the plant tissues mainly in dependence on their

Light Water Reactor Sustainability Program: Analysis of Pressurized Water Reactor Station Blackout caused by external flooding using the RISMC toolkit

International Nuclear Information System (INIS)

2014-01-01

The existing fleet of nuclear power plants is in the process of extending its lifetime and increasing the power generated from these plants via power uprates. In order to evaluate the impacts of these two factors on the safety of the plant, the Risk Informed Safety Margin Characterization project aims to provide insights to decision makers through a series of simulations of the plant dynamics for different initial conditions (e.g., probabilistic analysis and uncertainty quantification). This paper focuses on the impacts of power uprate on the safety margin of a boiling water reactor for a flooding induced station black-out event. Analysis is performed by using a combination of thermal-hydraulic codes and a stochastic analysis tool currently under development at the Idaho National Laboratory, i.e. RAVEN. We employed both classical statistical tools, i.e. Monte-Carlo, and more advanced machine learning based algorithms to perform uncertainty quantification in order to quantify changes in system performance and limitations as a consequence of power uprate. Results obtained give a detailed investigation of the issues associated with a plant power uprate including the effects of station black-out accident scenarios. We were able to quantify how the timing of specific events was impacted by a higher nominal reactor core power. Such safety insights can provide useful information to the decision makers to perform risk informed margins management.

Quantification analysis of CT for aphasic patients

Energy Technology Data Exchange (ETDEWEB)

Watanabe, S.; Ooyama, H.; Hojo, K.; Tasaki, H.; Hanazono, T.; Sato, T.; Metoki, H.; Totsuka, M.; Oosumi, N.

1987-02-01

Using a microcomputer, the locus and extent of the lesions, as demonstrated by computed tomography, for 44 aphasic patients with various types of aphasia were superimposed onto standardized matrices, composed of 10 slices with 3000 points (50 by 60). The relationships between the foci of the lesions and types of aphasia were investigated on the slices numbered 3, 4, 5, and 6 using a quantification theory, Type 3 (pattern analysis). Some types of regularities were observed on slices 3, 4, 5, and 6. The group of patients with Broca's aphasia and the group with Wernicke's aphasia were generally separated on the 1st component and the 2nd component of the quantification theory, Type 3. On the other hand, the group with global aphasia existed between the group with Broca's aphasia and that with Wernicke's aphasia. The group of patients with amnestic aphasia had no specific findings, and the group with conduction aphasia existed near those with Wernicke's aphasia. The above results serve to establish the quantification theory, Type 2 (discrimination analysis) and the quantification theory, Type 1 (regression analysis).

Rapid quantification and sex determination of forensic evidence materials.

Science.gov (United States)

Andréasson, Hanna; Allen, Marie

2003-11-01

DNA quantification of forensic evidence is very valuable for an optimal use of the available biological material. Moreover, sex determination is of great importance as additional information in criminal investigations as well as in identification of missing persons, no suspect cases, and ancient DNA studies. While routine forensic DNA analysis based on short tandem repeat markers includes a marker for sex determination, analysis of samples containing scarce amounts of DNA is often based on mitochondrial DNA, and sex determination is not performed. In order to allow quantification and simultaneous sex determination on minute amounts of DNA, an assay based on real-time PCR analysis of a marker within the human amelogenin gene has been developed. The sex determination is based on melting curve analysis, while an externally standardized kinetic analysis allows quantification of the nuclear DNA copy number in the sample. This real-time DNA quantification assay has proven to be highly sensitive, enabling quantification of single DNA copies. Although certain limitations were apparent, the system is a rapid, cost-effective, and flexible assay for analysis of forensic casework samples.

Validation of a commercially available enzyme-linked immunoabsorbent assay for the quantification of human α-Synuclein in cerebrospinal fluid.

Science.gov (United States)

Kruse, Niels; Mollenhauer, Brit

2015-11-01

The quantification of α-Synuclein in cerebrospinal fluid (CSF) as a biomarker has gained tremendous interest in the last years. Several commercially available immunoassays are emerging. We here describe the full validation of one commercially available ELISA assay for the quantification of α-Synuclein in human CSF (Covance alpha-Synuclein ELISA kit). The study was conducted within the BIOMARKAPD project in the European initiative Joint Program for Neurodegenerative Diseases (JPND). We investigated the effect of several pre-analytical and analytical confounders: i.e. (1) need for centrifugation of freshly drawn CSF, (2) sample stability, (3) delay of freezing, (4) volume of storage aliquots, (5) freeze/thaw cycles, (6) thawing conditions, (7) dilution linearity, (8) parallelism, (9) spike recovery, and (10) precision. None of these confounders influenced the levels of α-Synuclein in CSF significantly. We found a very high intra-assay precision. The inter-assay precision was lower than expected due to different performances of kit lots used. Overall the validated immunoassay is useful for the quantification of α-Synuclein in human CSF. Copyright © 2015 Elsevier B.V. All rights reserved.

Quantification of soil water evaporation using TDR-microlysimetry

Science.gov (United States)

Soil water evaporation is conventionally measured using microlysimeters by evaluating the daily change in mass. Daily removal is laborious and replacement immediately after irrigation events is impractical because of field wetness which leads to delays and an underestimation of evaporation. Irrigati...

Imaging and Quantification of Extracellular Vesicles by Transmission Electron Microscopy.

Science.gov (United States)

Linares, Romain; Tan, Sisareuth; Gounou, Céline; Brisson, Alain R

2017-01-01

Extracellular vesicles (EVs) are cell-derived vesicles that are present in blood and other body fluids. EVs raise major interest for their diverse physiopathological roles and their potential biomedical applications. However, the characterization and quantification of EVs constitute major challenges, mainly due to their small size and the lack of methods adapted for their study. Electron microscopy has made significant contributions to the EV field since their initial discovery. Here, we describe the use of two transmission electron microscopy (TEM) techniques for imaging and quantifying EVs. Cryo-TEM combined with receptor-specific gold labeling is applied to reveal the morphology, size, and phenotype of EVs, while their enumeration is achieved after high-speed sedimentation on EM grids.

Real-time PCR for the quantification of fungi in planta.

Science.gov (United States)

Klosterman, Steven J

2012-01-01

Methods enabling quantification of fungi in planta can be useful for a variety of applications. In combination with information on plant disease severity, indirect quantification of fungi in planta offers an additional tool in the screening of plants that are resistant to fungal diseases. In this chapter, a method is described for the quantification of DNA from a fungus in plant leaves using real-time PCR (qPCR). Although the method described entails quantification of the fungus Verticillium dahliae in lettuce leaves, the methodology described would be useful for other pathosystems as well. The method utilizes primers that are specific for amplification of a β-tubulin sequence from V. dahliae and a lettuce actin gene sequence as a reference for normalization. This approach enabled quantification of V. dahliae in the amount of 2.5 fg/ng of lettuce leaf DNA at 21 days following plant inoculation.

Quantification of the interception and initial retention of radioactive contaminants deposited on pasture grass by simulated rain

International Nuclear Information System (INIS)

Hoffman, F.O.; Thiessen, K.M.; Frank, M.L.; Blaylock, B.G.

1992-01-01

Simulated rain containing both soluble radionuclides and insoluble particles labeled with radionuclides was applied to pasture-type vegetation under conditions similar to those found during convective storms. The fraction of material in rain intercepted by vegetation and initially retained was determined for three sizes of insoluble polystyrene microspheres, soluble 7 Be 2+ and soluble 131 I as periodate or iodide, over a range of rainfall amounts of both moderate- and high-intensity precipitation. Values for the interception and initial retention by vegetation (interception fractions) for soluble forms of 131 I in simulated rain are much less than those for insoluble particles and the reactive cation 7 Be 2+ . The interception fraction for soluble 131 I is an inverse function of rain amount. The mass interception factor (the interception fraction normalized for biomass) of 131 I is almost solely dependent on the amount of rain. The 131 I vegetation-to-rain concentration ratio is relatively constant at approximately 2.6 ι kg -1 . For 7 Be 2+ and the insoluble particles, the interception fractions range from 0.1 to 0.6 with geometric means of approximately 0.3. For these materials there is a greater dependence on biomass than on rain amount; the geometric means of the mass interception factors for these substances range from 0.99 to 2.4 m 2 kg -1 . These results indicate that anionic 131 I is essentially removed with the water once the vegetation surface becomes saturated and that the 7 Be cation and the insoluble particles are adsorbed to or settle out on the plant surface. (Author)

A Probabilistic Framework for Peptide and Protein Quantification from Data-Dependent and Data-Independent LC-MS Proteomics Experiments

Science.gov (United States)

Richardson, Keith; Denny, Richard; Hughes, Chris; Skilling, John; Sikora, Jacek; Dadlez, Michał; Manteca, Angel; Jung, Hye Ryung; Jensen, Ole Nørregaard; Redeker, Virginie; Melki, Ronald; Langridge, James I.; Vissers, Johannes P.C.

2013-01-01

A probability-based quantification framework is presented for the calculation of relative peptide and protein abundance in label-free and label-dependent LC-MS proteomics data. The results are accompanied by credible intervals and regulation probabilities. The algorithm takes into account data uncertainties via Poisson statistics modified by a noise contribution that is determined automatically during an initial normalization stage. Protein quantification relies on assignments of component peptides to the acquired data. These assignments are generally of variable reliability and may not be present across all of the experiments comprising an analysis. It is also possible for a peptide to be identified to more than one protein in a given mixture. For these reasons the algorithm accepts a prior probability of peptide assignment for each intensity measurement. The model is constructed in such a way that outliers of any type can be automatically reweighted. Two discrete normalization methods can be employed. The first method is based on a user-defined subset of peptides, while the second method relies on the presence of a dominant background of endogenous peptides for which the concentration is assumed to be unaffected. Normalization is performed using the same computational and statistical procedures employed by the main quantification algorithm. The performance of the algorithm will be illustrated on example data sets, and its utility demonstrated for typical proteomics applications. The quantification algorithm supports relative protein quantification based on precursor and product ion intensities acquired by means of data-dependent methods, originating from all common isotopically-labeled approaches, as well as label-free ion intensity-based data-independent methods. PMID:22871168

Theoretical basis of quantification for layer of protection analysis (LOPA)

International Nuclear Information System (INIS)

Jin, Jianghong; Shuai, Bing; Wang, Xiaodong; Zhu, Zuogang

2016-01-01

Highlights: • When there is an IPL and λ 0 ⩾ 1, λ(t) and λ 0 don’t have logarithm linear relation any more. • The equations of scenario frequency of the low and high demand mode are different. • As long as an initiating event contributes more than 50% to the overall frequency, maximum is better than summation. • There are shared IPLs of initial events, so maximum is better than summation. • The bigger dependence degree of initial event is, the better maximum method is. - Abstract: In order to guide the corrective application of LOPA, this paper tries to discuss the theoretical basis of quantification for LOPA by comparing the computing methods of event tree consequences. It also discusses the computing equations for scenario frequency of the high demand mode by taking the scenario frequency of an initial event with one independent layer of protection (IPL) as example. Based on the probability theory, the computing method for scenario frequency of multiple initial events is improved and the application principle of two methods, i.e. summation and maximum value are brought forth. Research results show that the scenario frequency of the low demand mode has a specific computing equation. But for the high demand mode, the IPLs should be analyzed one by one, and the computing equation should be selected according to the demand mode of an IPL. As long as a single initiating event contributes more than 50% to the overall frequency of a particular consequence or the accident scenario induced by each initial event has the shared IPL, maximum value method is appropriate; otherwise, summation method should be adopted.

A Study on the Frequency of Initiating Event of OPR-1000 during Outage Periods

Energy Technology Data Exchange (ETDEWEB)

Hong Jae Beol; Jae, Moo Sung [Hanyang Univ., Seoul (Korea, Republic of)

2013-10-15

These sources of data did not reflect the latest event data which have occurred during the PWR outage to the frequencies of initiating event Electric Power Research Institute(EPRI) in USA collected the data of loss of decay heat removal during outage from 1989 to 2009 and published technical report. Domestic operating experiences for LOOP is gathered in Operational Performance Information System for Nuclear Power Plant(OPIS). To reduce conservatism and obtain completeness for LPSD PSA, those data should be collected and used to update the frequencies. The frequencies of LOSDC and LOOP are reevaluated using the data of EPRI and OPIS in this paper. Quantification is conducted to recalculate core damage frequency(CDF), since the rate is changed. The results are discussed below. To make an accurate estimate of the initiating events of LPSD PSA, the event data were collected and the frequencies of initiating events were updated using Bayesian approach. CDF was evaluated through quantification. Δ CDF is -40% and the dominant contributor is pressurizer PSV stuck open event. The most of the event data in EPRI TR were collected from US nuclear power plant industry. Those data are not enough to evaluate outage risk precisely. Therefore, to reduce conservatism and obtain completeness for LPSD PSA, the licensee event report and domestic data should be collected and reflected to the frequencies of the initiating events during outage.

Quantification of water usage at a South African platinum processing ...

African Journals Online (AJOL)

The mining industry utilises 3% of the total water withdrawn in South Africa and is one of the industries responsible for the deterioration of ..... be installed to make it easier to notice if there is a leak, or if a process .... water supply industry, 2010.

Initial-Boundary Value Problem Solution of the Nonlinear Shallow-water Wave Equations

Science.gov (United States)

Kanoglu, U.; Aydin, B.

2014-12-01

The hodograph transformation solutions of the one-dimensional nonlinear shallow-water wave (NSW) equations are usually obtained through integral transform techniques such as Fourier-Bessel transforms. However, the original formulation of Carrier and Greenspan (1958 J Fluid Mech) and its variant Carrier et al. (2003 J Fluid Mech) involve evaluation integrals. Since elliptic integrals are highly singular as discussed in Carrier et al. (2003), this solution methodology requires either approximation of the associated integrands by smooth functions or selection of regular initial/boundary data. It should be noted that Kanoglu (2004 J Fluid Mech) partly resolves this issue by simplifying the resulting integrals in closed form. Here, the hodograph transform approach is coupled with the classical eigenfunction expansion method rather than integral transform techniques and a new analytical model for nonlinear long wave propagation over a plane beach is derived. This approach is based on the solution methodology used in Aydın & Kanoglu (2007 CMES-Comp Model Eng) for wind set-down relaxation problem. In contrast to classical initial- or boundary-value problem solutions, here, the NSW equations are formulated to yield an initial-boundary value problem (IBVP) solution. In general, initial wave profile with nonzero initial velocity distribution is assumed and the flow variables are given in the form of Fourier-Bessel series. The results reveal that the developed method allows accurate estimation of the spatial and temporal variation of the flow quantities, i.e., free-surface height and depth-averaged velocity, with much less computational effort compared to the integral transform techniques such as Carrier et al. (2003), Kanoglu (2004), Tinti & Tonini (2005 J Fluid Mech), and Kanoglu & Synolakis (2006 Phys Rev Lett). Acknowledgments: This work is funded by project ASTARTE- Assessment, STrategy And Risk Reduction for Tsunamis in Europe. Grant 603839, 7th FP (ENV.2013.6.4-3 ENV

Strategy study of quantification harmonization of SUV in PET/CT images

International Nuclear Information System (INIS)

Fischer, Andreia Caroline Fischer da Silveira

2014-01-01

In clinical practice, PET/CT images are often analyzed qualitatively by visual comparison of tumor lesions and normal tissues uptake; and semi-quantitatively by means of a parameter called SUV (Standardized Uptake Value). To ensure that longitudinal studies acquired on different scanners are interchangeable, and information of quantification is comparable, it is necessary to establish a strategy to harmonize the quantification of SUV. The aim of this study is to evaluate the strategy to harmonize the quantification of PET/CT images, performed with different scanner models and manufacturers. For this purpose, a survey of the technical characteristics of equipment and acquisition protocols of clinical images of different services of PET/CT in the state of Rio Grande do Sul was conducted. For each scanner, the accuracy of SUV quantification, and the Recovery Coefficient (RC) curves were determined, using the reconstruction parameters clinically relevant and available. From these data, harmonized performance specifications among the evaluated scanners were identified, as well as the algorithm that produces, for each one, the most accurate quantification. Finally, the most appropriate reconstruction parameters to harmonize the SUV quantification in each scanner, either regionally or internationally were identified. It was found that the RC values of the analyzed scanners proved to be overestimated by up to 38%, particularly for objects larger than 17mm. These results demonstrate the need for further optimization, through the reconstruction parameters modification, and even the change of the reconstruction algorithm used in each scanner. It was observed that there is a decoupling between the best image for PET/CT qualitative analysis and the best image for quantification studies. Thus, the choice of reconstruction method should be tied to the purpose of the PET/CT study in question, since the same reconstruction algorithm is not adequate, in one scanner, for qualitative

Application of Fuzzy Comprehensive Evaluation Method in Trust Quantification

Directory of Open Access Journals (Sweden)

Shunan Ma

2011-10-01

Full Text Available Trust can play an important role for the sharing of resources and information in open network environments. Trust quantification is thus an important issue in dynamic trust management. By considering the fuzziness and uncertainty of trust, in this paper, we propose a fuzzy comprehensive evaluation method to quantify trust along with a trust quantification algorithm. Simulation results show that the trust quantification algorithm that we propose can effectively quantify trust and the quantified value of an entity's trust is consistent with the behavior of the entity.

Evaluation of organic endocrine disruptors in water at Brazilian Multipurpose Reactor - RMB installation area

Energy Technology Data Exchange (ETDEWEB)

Silva, Larissa L.; Martins, Elâine A.J.; Cotrim, Marycel E.B.; Pires, Maria A.F., E-mail: larissa.limeira07@gmail.com, E-mail: elaine@ipen.br, E-mail: mecotrim@ipen.br, E-mail: mapires@ipen.br [Instituto de Pesquisas Energéticas e Nucleares (IPEN/CNEN-SP), São Paulo, SP (Brazil)

2017-07-01

The study of pollutants with organic and inorganic characteristics in groundwater and surface waters of a given region is an important tool in the assessment of pollution. Endocrine interferers are synthetic or natural chemicals that have the ability to act on the endocrine system of humans and animals by mimetizing natural hormones and may produce adverse effects on organisms, even in low concentrations (μg or ng.L{sup -1}). Anthropic activities are the major source of input of endocrine disruptors into the environment. The Brazilian government has a project to construct a multipurpose reactor, Brazilian Multipurpose Reactor (RMB), at the Iperó city, to improve the nuclear research Brazilian capacity. The object of this research in to analyze 14 organic compounds that may be present in the groundwater and surface waters of the RMB installation area. This is an unprecedented and extremely important study for the evaluated region; since it will provide guidance on the degree of contamination of the local waters before the construction begins. The study will also make it possible to verify if the construction of the RMB will offer environmental issues to the place. For the determination of the compounds of interest, a developed and validated analytical method was used. This methodology consists of the concentration of the samples by solid phase extraction (SPE) followed by quantification by gas chromatography coupled to the mass spectrometry detector (GC/MS). The water column particulate was also evaluated by ultrasonic extraction, followed by quantification by GC/MS. The results reveal that some of the compounds were found and it was due to anthropic activities in the vicinity of the regions. By initial analysis it was possible verify river that cross the RMB area present values below 0.05 μg L{sup -1}. (author)

Evaluation of organic endocrine disruptors in water at Brazilian Multipurpose Reactor - RMB installation area

International Nuclear Information System (INIS)

Silva, Larissa L.; Martins, Elâine A.J.; Cotrim, Marycel E.B.; Pires, Maria A.F.

2017-01-01

The study of pollutants with organic and inorganic characteristics in groundwater and surface waters of a given region is an important tool in the assessment of pollution. Endocrine interferers are synthetic or natural chemicals that have the ability to act on the endocrine system of humans and animals by mimetizing natural hormones and may produce adverse effects on organisms, even in low concentrations (μg or ng.L -1 ). Anthropic activities are the major source of input of endocrine disruptors into the environment. The Brazilian government has a project to construct a multipurpose reactor, Brazilian Multipurpose Reactor (RMB), at the Iperó city, to improve the nuclear research Brazilian capacity. The object of this research in to analyze 14 organic compounds that may be present in the groundwater and surface waters of the RMB installation area. This is an unprecedented and extremely important study for the evaluated region; since it will provide guidance on the degree of contamination of the local waters before the construction begins. The study will also make it possible to verify if the construction of the RMB will offer environmental issues to the place. For the determination of the compounds of interest, a developed and validated analytical method was used. This methodology consists of the concentration of the samples by solid phase extraction (SPE) followed by quantification by gas chromatography coupled to the mass spectrometry detector (GC/MS). The water column particulate was also evaluated by ultrasonic extraction, followed by quantification by GC/MS. The results reveal that some of the compounds were found and it was due to anthropic activities in the vicinity of the regions. By initial analysis it was possible verify river that cross the RMB area present values below 0.05 μg L -1 . (author)

Pitfalls of DNA Quantification Using DNA-Binding Fluorescent Dyes and Suggested Solutions.

Science.gov (United States)

Nakayama, Yuki; Yamaguchi, Hiromi; Einaga, Naoki; Esumi, Mariko

2016-01-01

The Qubit fluorometer is a DNA quantification device based on the fluorescence intensity of fluorescent dye binding to double-stranded DNA (dsDNA). Qubit is generally considered useful for checking DNA quality before next-generation sequencing because it measures intact dsDNA. To examine the most accurate and suitable methods for quantifying DNA for quality assessment, we compared three quantification methods: NanoDrop, which measures UV absorbance; Qubit; and quantitative PCR (qPCR), which measures the abundance of a target gene. For the comparison, we used three types of DNA: 1) DNA extracted from fresh frozen liver tissues (Frozen-DNA); 2) DNA extracted from formalin-fixed, paraffin-embedded liver tissues comparable to those used for Frozen-DNA (FFPE-DNA); and 3) DNA extracted from the remaining fractions after RNA extraction with Trizol reagent (Trizol-DNA). These DNAs were serially diluted with distilled water and measured using three quantification methods. For Frozen-DNA, the Qubit values were not proportional to the dilution ratio, in contrast with the NanoDrop and qPCR values. This non-proportional decrease in Qubit values was dependent on a lower salt concentration, and over 1 mM NaCl in the DNA solution was required for the Qubit measurement. For FFPE-DNA, the Qubit values were proportional to the dilution ratio and were lower than the NanoDrop values. However, electrophoresis revealed that qPCR reflected the degree of DNA fragmentation more accurately than Qubit. Thus, qPCR is superior to Qubit for checking the quality of FFPE-DNA. For Trizol-DNA, the Qubit values were proportional to the dilution ratio and were consistently lower than the NanoDrop values, similar to FFPE-DNA. However, the qPCR values were higher than the NanoDrop values. Electrophoresis with SYBR Green I and single-stranded DNA (ssDNA) quantification demonstrated that Trizol-DNA consisted mostly of non-fragmented ssDNA. Therefore, Qubit is not always the most accurate method for

Mechanism of fatigue crack initiation in austenitic stainless steels in light water reactor environments

International Nuclear Information System (INIS)

Chopra, O.K.; Shack, W.J.; Muscara, J.

2003-01-01

This paper examines the mechanism of fatigue crack initiation in austenitic stainless steels (SSs) in light water reactor (LWR) coolant environments. The effects of key material and loading variables on the fatigue lives of wrought and cast austenitic SSs in air and LWR environments have been evaluated. The influence of reactor coolant environments on the formation and growth of fatigue cracks in polished smooth SS specimens is discussed. The results indicate that the fatigue lives of these steels are decreased primarily by the effects of the environment on the growth of cracks <200 μm and, to a lesser extent, on enhanced growth rates of longer cracks. The fracture morphology in the specimens has been characterized. Exploratory fatigue tests were conducted to study the effects of surface micropits or minor differences in the surface oxide on fatigue crack initiation. (author)

Iron overload in the liver diagnostic and quantification

Energy Technology Data Exchange (ETDEWEB)

Alustiza, Jose M. [Osatek SA, P Dr. Beguiristain 109, 20014, San Sebastian, Guipuzcoa (Spain)]. E-mail: jmalustiza@osatek.es; Castiella, Agustin [Osatek SA, P Dr. Beguiristain 109, 20014, San Sebastian, Guipuzcoa (Spain); Juan, Maria D. de [Osatek SA, P Dr. Beguiristain 109, 20014, San Sebastian, Guipuzcoa (Spain); Emparanza, Jose I. [Osatek SA, P Dr. Beguiristain 109, 20014, San Sebastian, Guipuzcoa (Spain); Artetxe, Jose [Osatek SA, P Dr. Beguiristain 109, 20014, San Sebastian, Guipuzcoa (Spain); Uranga, Maite [Osatek SA, P Dr. Beguiristain 109, 20014, San Sebastian, Guipuzcoa (Spain)

2007-03-15

Hereditary Hemochromatosis is the most frequent modality of iron overload. Since 1996 genetic tests have facilitated significantly the non-invasive diagnosis of the disease. There are however many cases of negative genetic tests that require confirmation by hepatic iron quantification which is traditionally performed by hepatic biopsy. There are many studies that have demonstrated the possibility of performing hepatic iron quantification with Magnetic Resonance. However, a consensus has not been reached yet regarding the technique or the possibility to reproduce the same method of calculus in different machines. This article reviews the state of the art of the question and delineates possible future lines to standardise this non-invasive method of hepatic iron quantification.

Iron overload in the liver diagnostic and quantification

International Nuclear Information System (INIS)

Alustiza, Jose M.; Castiella, Agustin; Juan, Maria D. de; Emparanza, Jose I.; Artetxe, Jose; Uranga, Maite

2007-01-01

Hereditary Hemochromatosis is the most frequent modality of iron overload. Since 1996 genetic tests have facilitated significantly the non-invasive diagnosis of the disease. There are however many cases of negative genetic tests that require confirmation by hepatic iron quantification which is traditionally performed by hepatic biopsy. There are many studies that have demonstrated the possibility of performing hepatic iron quantification with Magnetic Resonance. However, a consensus has not been reached yet regarding the technique or the possibility to reproduce the same method of calculus in different machines. This article reviews the state of the art of the question and delineates possible future lines to standardise this non-invasive method of hepatic iron quantification

Degradation process modelization in of metallic drink containers, in soil, in water and in water-soil interaction

International Nuclear Information System (INIS)

Rieiro, I.; Trivino, V.; Gutierrez, T.; Munoz, J.; Larrea, M. T.

2013-01-01

This study asses the environmental pollution by metal release that takes place during prolonged exposures when metallic drink containers are accidentally settle in the soil in a uncontrolled way, For comparative purposes, the F111 steel and the aluminium alloy 3003, widely used for the fabrication of these containers, are also considered. A experimental design is proposed to simulate the environmental pollution during prolonged exposures. Analytical indicators have been obtained determining the metallic concentration from three types of mediums; water, water in presence of soil, and absorption-adsorption in soil. An analytical methodology has been developed by Atomic Emission Spectrometry with ICP as exciting source (ICP-OES) for metallic quantification. The method was validated using Certified Reference Materials (CRMs) of soil and water and the precision obtained varies from 5.39 to 5.86% and from 5.75 to 6.27%, respectively according to of the element studied. A statistical descriptive study followed by a factorial analysis (linear general model) has been carried out for the treatment of the experimental data packages. The metallic quantification for the three mediums shows that the soil inhibits metallic solubility in water. The process to make packages reduces in both cases their metallic cession. (Author)

Quantification of margins and uncertainties: Alternative representations of epistemic uncertainty

International Nuclear Information System (INIS)

Helton, Jon C.; Johnson, Jay D.

2011-01-01

In 2001, the National Nuclear Security Administration of the U.S. Department of Energy in conjunction with the national security laboratories (i.e., Los Alamos National Laboratory, Lawrence Livermore National Laboratory and Sandia National Laboratories) initiated development of a process designated Quantification of Margins and Uncertainties (QMU) for the use of risk assessment methodologies in the certification of the reliability and safety of the nation's nuclear weapons stockpile. A previous presentation, 'Quantification of Margins and Uncertainties: Conceptual and Computational Basis,' describes the basic ideas that underlie QMU and illustrates these ideas with two notional examples that employ probability for the representation of aleatory and epistemic uncertainty. The current presentation introduces and illustrates the use of interval analysis, possibility theory and evidence theory as alternatives to the use of probability theory for the representation of epistemic uncertainty in QMU-type analyses. The following topics are considered: the mathematical structure of alternative representations of uncertainty, alternative representations of epistemic uncertainty in QMU analyses involving only epistemic uncertainty, and alternative representations of epistemic uncertainty in QMU analyses involving a separation of aleatory and epistemic uncertainty. Analyses involving interval analysis, possibility theory and evidence theory are illustrated with the same two notional examples used in the presentation indicated above to illustrate the use of probability to represent aleatory and epistemic uncertainty in QMU analyses.

Disease quantification in dermatology

DEFF Research Database (Denmark)

Greve, Tanja Maria; Kamp, Søren; Jemec, Gregor B E

2013-01-01

Accurate documentation of disease severity is a prerequisite for clinical research and the practice of evidence-based medicine. The quantification of skin diseases such as psoriasis currently relies heavily on clinical scores. Although these clinical scoring methods are well established and very ...

In vitro absolute metabolic quantification by magnetic resonance spectroscopy; Quantificacao metabolica absoluta in vitro por espectroscopia de ressonancia magnetica

Energy Technology Data Exchange (ETDEWEB)

Barreto, Felipe R.; Salmon, Carlos E.G. [Universidade de Sao Paulo (USP), Ribeirao Preto, SP (Brazil). Faculdade de Filosofia, Ciencias e Letras. Dept. de Fisica e Matematica], e-mail: garrido@ffclrp.usp.br

2010-03-15

In this project we estimated characteristic nuclear relaxation times (T1 and T2) from {sup 1}H in vitro of water and the following human brain metabolites: N-Acetyl-Aspartate (NAA), Choline (Cho), Creatine (Cr) and Myo-Inositol (M-Ins) using nuclear magnetic resonance spectroscopy, aiming at relaxation effects correction for absolute quantification. Phantoms with 300 mL of a standard solution with a metabolite were used for spectra acquisition. Variable eco time sequences were used to determinate T2 while variable repetition or inversion time was used for T1 determination. Spectra processing was done with MRUI and LCModel software. Origin 8.0 was used for data fitting. The following T1/T2 values (ms) were the best estimated according to calculated absolute concentration analyses: (4061/934) for water, (1800/830) for NAA, (2316/717) for Cr, (2356/1095) for Cho and (1537/531) for M-Ins. With MRUI better results were obtained in T1 and T2 determination for relaxation effects correction in the absolute quantification process. (author)

Measuring Identification and Quantification Errors in Spectral CT Material Decomposition

Directory of Open Access Journals (Sweden)

Aamir Younis Raja

2018-03-01

Full Text Available Material decomposition methods are used to identify and quantify multiple tissue components in spectral CT but there is no published method to quantify the misidentification of materials. This paper describes a new method for assessing misidentification and mis-quantification in spectral CT. We scanned a phantom containing gadolinium (1, 2, 4, 8 mg/mL, hydroxyapatite (54.3, 211.7, 808.5 mg/mL, water and vegetable oil using a MARS spectral scanner equipped with a poly-energetic X-ray source operated at 118 kVp and a CdTe Medipix3RX camera. Two imaging protocols were used; both with and without 0.375 mm external brass filter. A proprietary material decomposition method identified voxels as gadolinium, hydroxyapatite, lipid or water. Sensitivity and specificity information was used to evaluate material misidentification. Biological samples were also scanned. There were marked differences in identification and quantification between the two protocols even though spectral and linear correlation of gadolinium and hydroxyapatite in the reconstructed images was high and no qualitative segmentation differences in the material decomposed images were observed. At 8 mg/mL, gadolinium was correctly identified for both protocols, but concentration was underestimated by over half for the unfiltered protocol. At 1 mg/mL, gadolinium was misidentified in 38% of voxels for the filtered protocol and 58% of voxels for the unfiltered protocol. Hydroxyapatite was correctly identified at the two higher concentrations for both protocols, but mis-quantified for the unfiltered protocol. Gadolinium concentration as measured in the biological specimen showed a two-fold difference between protocols. In future, this methodology could be used to compare and optimize scanning protocols, image reconstruction methods, and methods for material differentiation in spectral CT.

On the complex quantification of risk: systems-based perspective on terrorism.

Science.gov (United States)

Haimes, Yacov Y

2011-08-01

This article highlights the complexity of the quantification of the multidimensional risk function, develops five systems-based premises on quantifying the risk of terrorism to a threatened system, and advocates the quantification of vulnerability and resilience through the states of the system. The five premises are: (i) There exists interdependence between a specific threat to a system by terrorist networks and the states of the targeted system, as represented through the system's vulnerability, resilience, and criticality-impact. (ii) A specific threat, its probability, its timing, the states of the targeted system, and the probability of consequences can be interdependent. (iii) The two questions in the risk assessment process: "What is the likelihood?" and "What are the consequences?" can be interdependent. (iv) Risk management policy options can reduce both the likelihood of a threat to a targeted system and the associated likelihood of consequences by changing the states (including both vulnerability and resilience) of the system. (v) The quantification of risk to a vulnerable system from a specific threat must be built on a systemic and repeatable modeling process, by recognizing that the states of the system constitute an essential step to construct quantitative metrics of the consequences based on intelligence gathering, expert evidence, and other qualitative information. The fact that the states of all systems are functions of time (among other variables) makes the time frame pivotal in each component of the process of risk assessment, management, and communication. Thus, risk to a system, caused by an initiating event (e.g., a threat) is a multidimensional function of the specific threat, its probability and time frame, the states of the system (representing vulnerability and resilience), and the probabilistic multidimensional consequences. © 2011 Society for Risk Analysis.

Effects of the Biofuels Initiative on Water Quality and Quantity in the Mississippi Alluvial Plain

Science.gov (United States)

Welch, H. L.; Green, C. T.; Coupe, R. H.

2010-12-01

In the search for renewable fuel alternatives, biofuels have gained strong political momentum. In the last decade, extensive mandates, policies, and subsidies have been adopted to foster the development of a biofuels industry in the United States. The manifestation of the Biofuels Initiative in the Mississippi Delta was a 47-percent decrease in cotton acreage with a concurrent 288 percent increase in corn acreage in 2007. Because corn uses 80 percent more water for irrigation than cotton, and more nitrogen fertilizer is recommended for corn cultivation, this crop type change has implications for water quantity and quality in the Delta. Increased water use for corn is accelerating water-level declines in the Mississippi River Valley alluvial aquifer at a time when conservation is being encouraged due to concerns about sustainability. A mathematical model calibrated to existing conditions in the Delta shows that increased fertilizer applications on corn will increase the extent of nitrate movement into the alluvial aquifer. Estimates based on surface-water modeling results indicate that higher application rates of nitrogen from increased corn production increases the amount of nitrogen exported from the Yazoo River basin to the Gulf of Mexico by about 7 percent; increasing the Delta’s contribution to hypoxic conditions in the Gulf of Mexico.

Accurate and reliable quantification of total microalgal fuel potential as fatty acid methyl esters by in situ transesterification

Energy Technology Data Exchange (ETDEWEB)

Laurens, Lieve M.L.; Quinn, Matthew; Wychen, Stefanie van; Templeton, David W.; Wolfrum, Edward J. [National Bioenergy Center, National Renewable Energy Laboratory, Golden, CO (United States)

2012-04-15

In the context of algal biofuels, lipids, or better aliphatic chains of the fatty acids, are perhaps the most important constituents of algal biomass. Accurate quantification of lipids and their respective fuel yield is crucial for comparison of algal strains and growth conditions and for process monitoring. As an alternative to traditional solvent-based lipid extraction procedures, we have developed a robust whole-biomass in situ transesterification procedure for quantification of algal lipids (as fatty acid methyl esters, FAMEs) that (a) can be carried out on a small scale (using 4-7 mg of biomass), (b) is applicable to a range of different species, (c) consists of a single-step reaction, (d) is robust over a range of different temperature and time combinations, and (e) tolerant to at least 50% water in the biomass. Unlike gravimetric lipid quantification, which can over- or underestimate the lipid content, whole biomass transesterification reflects the true potential fuel yield of algal biomass. We report here on the comparison of the yield of FAMEs by using different catalysts and catalyst combinations, with the acid catalyst HCl providing a consistently high level of conversion of fatty acids with a precision of 1.9% relative standard deviation. We investigate the influence of reaction time, temperature, and biomass water content on the measured FAME content and profile for 4 different samples of algae (replete and deplete Chlorella vulgaris, replete Phaeodactylum tricornutum, and replete Nannochloropsis sp.). We conclude by demonstrating a full mass balance closure of all fatty acids around a traditional lipid extraction process. (orig.)

Installation Restoration Program, Phase II - Confirmation/Quantification Stage I, Moody Air Force Base, Georgia.

Science.gov (United States)

1985-12-01

Confirmation/Quantification. Moody AFB- GA _____ S12. PERSONAL AUTHOR(S) .. ’ Steinberg J.A. and Thiess, W.G. 13.& TYPE OF REPORT 13b. TIME COVERED 14I. DATE...2.3.2 Soils On the high ground western portion of the base, the surface soils are mostly in the Tifton series. The soil profile consists of about 2 to...Florida Department of Environmental Regulation FWQS Florida Water Quality Standards gpd Gallons per day gpm Gallons per minute GC Gas chromatograph

Comparison of Suitability of the Most Common Ancient DNA Quantification Methods.

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Brzobohatá, Kristýna; Drozdová, Eva; Smutný, Jiří; Zeman, Tomáš; Beňuš, Radoslav

2017-04-01

Ancient DNA (aDNA) extracted from historical bones is damaged and fragmented into short segments, present in low quantity, and usually copurified with microbial DNA. A wide range of DNA quantification methods are available. The aim of this study was to compare the five most common DNA quantification methods for aDNA. Quantification methods were tested on DNA extracted from skeletal material originating from an early medieval burial site. The tested methods included ultraviolet (UV) absorbance, real-time quantitative polymerase chain reaction (qPCR) based on SYBR ® green detection, real-time qPCR based on a forensic kit, quantification via fluorescent dyes bonded to DNA, and fragmentary analysis. Differences between groups were tested using a paired t-test. Methods that measure total DNA present in the sample (NanoDrop ™ UV spectrophotometer and Qubit ® fluorometer) showed the highest concentrations. Methods based on real-time qPCR underestimated the quantity of aDNA. The most accurate method of aDNA quantification was fragmentary analysis, which also allows DNA quantification of the desired length and is not affected by PCR inhibitors. Methods based on the quantification of the total amount of DNA in samples are unsuitable for ancient samples as they overestimate the amount of DNA presumably due to the presence of microbial DNA. Real-time qPCR methods give undervalued results due to DNA damage and the presence of PCR inhibitors. DNA quantification methods based on fragment analysis show not only the quantity of DNA but also fragment length.

Critical points of DNA quantification by real-time PCR – effects of DNA extraction method and sample matrix on quantification of genetically modified organisms

Directory of Open Access Journals (Sweden)

Žel Jana

2006-08-01

Full Text Available Abstract Background Real-time PCR is the technique of choice for nucleic acid quantification. In the field of detection of genetically modified organisms (GMOs quantification of biotech products may be required to fulfil legislative requirements. However, successful quantification depends crucially on the quality of the sample DNA analyzed. Methods for GMO detection are generally validated on certified reference materials that are in the form of powdered grain material, while detection in routine laboratories must be performed on a wide variety of sample matrixes. Due to food processing, the DNA in sample matrixes can be present in low amounts and also degraded. In addition, molecules of plant origin or from other sources that affect PCR amplification of samples will influence the reliability of the quantification. Further, the wide variety of sample matrixes presents a challenge for detection laboratories. The extraction method must ensure high yield and quality of the DNA obtained and must be carefully selected, since even components of DNA extraction solutions can influence PCR reactions. GMO quantification is based on a standard curve, therefore similarity of PCR efficiency for the sample and standard reference material is a prerequisite for exact quantification. Little information on the performance of real-time PCR on samples of different matrixes is available. Results Five commonly used DNA extraction techniques were compared and their suitability for quantitative analysis was assessed. The effect of sample matrix on nucleic acid quantification was assessed by comparing 4 maize and 4 soybean matrixes. In addition 205 maize and soybean samples from routine analysis were analyzed for PCR efficiency to assess variability of PCR performance within each sample matrix. Together with the amount of DNA needed for reliable quantification, PCR efficiency is the crucial parameter determining the reliability of quantitative results, therefore it was

Critical points of DNA quantification by real-time PCR – effects of DNA extraction method and sample matrix on quantification of genetically modified organisms

Science.gov (United States)

Cankar, Katarina; Štebih, Dejan; Dreo, Tanja; Žel, Jana; Gruden, Kristina

2006-01-01

Background Real-time PCR is the technique of choice for nucleic acid quantification. In the field of detection of genetically modified organisms (GMOs) quantification of biotech products may be required to fulfil legislative requirements. However, successful quantification depends crucially on the quality of the sample DNA analyzed. Methods for GMO detection are generally validated on certified reference materials that are in the form of powdered grain material, while detection in routine laboratories must be performed on a wide variety of sample matrixes. Due to food processing, the DNA in sample matrixes can be present in low amounts and also degraded. In addition, molecules of plant origin or from other sources that affect PCR amplification of samples will influence the reliability of the quantification. Further, the wide variety of sample matrixes presents a challenge for detection laboratories. The extraction method must ensure high yield and quality of the DNA obtained and must be carefully selected, since even components of DNA extraction solutions can influence PCR reactions. GMO quantification is based on a standard curve, therefore similarity of PCR efficiency for the sample and standard reference material is a prerequisite for exact quantification. Little information on the performance of real-time PCR on samples of different matrixes is available. Results Five commonly used DNA extraction techniques were compared and their suitability for quantitative analysis was assessed. The effect of sample matrix on nucleic acid quantification was assessed by comparing 4 maize and 4 soybean matrixes. In addition 205 maize and soybean samples from routine analysis were analyzed for PCR efficiency to assess variability of PCR performance within each sample matrix. Together with the amount of DNA needed for reliable quantification, PCR efficiency is the crucial parameter determining the reliability of quantitative results, therefore it was chosen as the primary

SU-D-218-05: Material Quantification in Spectral X-Ray Imaging: Optimization and Validation.

Science.gov (United States)

Nik, S J; Thing, R S; Watts, R; Meyer, J

2012-06-01

To develop and validate a multivariate statistical method to optimize scanning parameters for material quantification in spectral x-rayimaging. An optimization metric was constructed by extensively sampling the thickness space for the expected number of counts for m (two or three) materials. This resulted in an m-dimensional confidence region ofmaterial quantities, e.g. thicknesses. Minimization of the ellipsoidal confidence region leads to the optimization of energy bins. For the given spectrum, the minimum counts required for effective material separation can be determined by predicting the signal-to-noise ratio (SNR) of the quantification. A Monte Carlo (MC) simulation framework using BEAM was developed to validate the metric. Projection data of the m-materials was generated and material decomposition was performed for combinations of iodine, calcium and water by minimizing the z-score between the expected spectrum and binned measurements. The mean square error (MSE) and variance were calculated to measure the accuracy and precision of this approach, respectively. The minimum MSE corresponds to the optimal energy bins in the BEAM simulations. In the optimization metric, this is equivalent to the smallest confidence region. The SNR of the simulated images was also compared to the predictions from the metric. TheMSE was dominated by the variance for the given material combinations,which demonstrates accurate material quantifications. The BEAMsimulations revealed that the optimization of energy bins was accurate to within 1keV. The SNRs predicted by the optimization metric yielded satisfactory agreement but were expectedly higher for the BEAM simulations due to the inclusion of scattered radiation. The validation showed that the multivariate statistical method provides accurate material quantification, correct location of optimal energy bins and adequateprediction of image SNR. The BEAM code system is suitable for generating spectral x- ray imaging simulations. �

Distribution of genes associated with yield potential and water ...

Indian Academy of Sciences (India)

on the FMs related to yield and water saving in wheat. Till date, six loci ..... Hu Y., Moiwo J. P., Yang Y., Han S. and Yang Y. 2010 Agricul- tural water-saving ... Lyu L., Hu Y., Li Y. and Wang P. 2007 Effect of irrigation treatment on water use ... Zhang Y. J., Fan P. S., Zhang X., Chen C. J. and Zhou M. G. 2009. Quantification of ...

Feasibility and accuracy of dual-layer spectral detector computed tomography for quantification of gadolinium: a phantom study.

Science.gov (United States)

van Hamersvelt, Robbert W; Willemink, Martin J; de Jong, Pim A; Milles, Julien; Vlassenbroek, Alain; Schilham, Arnold M R; Leiner, Tim

2017-09-01

The aim of this study was to evaluate the feasibility and accuracy of dual-layer spectral detector CT (SDCT) for the quantification of clinically encountered gadolinium concentrations. The cardiac chamber of an anthropomorphic thoracic phantom was equipped with 14 tubular inserts containing different gadolinium concentrations, ranging from 0 to 26.3 mg/mL (0.0, 0.1, 0.2, 0.4, 0.5, 1.0, 2.0, 3.0, 4.0, 5.1, 10.6, 15.7, 20.7 and 26.3 mg/mL). Images were acquired using a novel 64-detector row SDCT system at 120 and 140 kVp. Acquisitions were repeated five times to assess reproducibility. Regions of interest (ROIs) were drawn on three slices per insert. A spectral plot was extracted for every ROI and mean attenuation profiles were fitted to known attenuation profiles of water and pure gadolinium using in-house-developed software to calculate gadolinium concentrations. At both 120 and 140 kVp, excellent correlations between scan repetitions and true and measured gadolinium concentrations were found (R > 0.99, P  0.99, CI 0.99-1.00). Relative mean measurement errors stayed below 10% down to 2.0 mg/mL true gadolinium concentration at 120 kVp and below 5% down to 1.0 mg/mL true gadolinium concentration at 140 kVp. SDCT allows for accurate quantification of gadolinium at both 120 and 140 kVp. Lowest measurement errors were found for 140 kVp acquisitions. • Gadolinium quantification may be useful in patients with contraindication to iodine. • Dual-layer spectral detector CT allows for overall accurate quantification of gadolinium. • Interscan variability of gadolinium quantification using SDCT material decomposition is excellent.

Exploring Heterogeneous Multicore Architectures for Advanced Embedded Uncertainty Quantification.

Energy Technology Data Exchange (ETDEWEB)

Phipps, Eric T.; Edwards, Harold C.; Hu, Jonathan J.

2014-09-01

We explore rearrangements of classical uncertainty quantification methods with the aim of achieving higher aggregate performance for uncertainty quantification calculations on emerging multicore and manycore architectures. We show a rearrangement of the stochastic Galerkin method leads to improved performance and scalability on several computational architectures whereby un- certainty information is propagated at the lowest levels of the simulation code improving memory access patterns, exposing new dimensions of fine grained parallelism, and reducing communica- tion. We also develop a general framework for implementing such rearrangements for a diverse set of uncertainty quantification algorithms as well as computational simulation codes to which they are applied.

In vivo quantification of response to treatment in patients with multiple myeloma by 1H magnetic resonance spectroscopy of bone marrow.

Science.gov (United States)

Oriol, Albert; Valverde, Daniel; Capellades, Jaume; Cabañas, Miquel E; Ribera, Josep-Maria; Arús, Carles

2007-04-01

Magnetic resonance imaging (MRI) is the gold standard non-invasive technique to detect malignant disease in the bone marrow. Proton magnetic resonance spectroscopy (MRS) can be performed as a quick adjunct to routine spinal MRI. We performed proton MRS to patients with multiple myeloma (MM) at diagnosis and after treatment to investigate the possible correlation of MRS data with response to therapy. Twenty-one patients with newly diagnosed MM underwent combined MRI/MRS explorations of a transverse center section in the fifth lumbar vertebral body. MRS was acquired with STEAM and 40 ms TE. Areas of unsuppressed water and lipid resonances were used to calculate the lipid-to-water ratio (LWR). No association was detected between initial LWRs and the clinical characteristics of patients. Post treatment MRS was available in 16 patients of whom 11 (69%) presented an LWR increase, this included all complete responders (8/8, 100%, P = 0.012). A post-treatment LWR value equal to or larger than one is proposed as a non-invasive marker of complete response to treatment. Only patients responding to treatment presented a significant increase in bone marrow LWR after therapy. MRS may provide an adequate quantification of response to chemotherapy in patients with MM.

GMO quantification: valuable experience and insights for the future.

Science.gov (United States)

Milavec, Mojca; Dobnik, David; Yang, Litao; Zhang, Dabing; Gruden, Kristina; Zel, Jana

2014-10-01

Cultivation and marketing of genetically modified organisms (GMOs) have been unevenly adopted worldwide. To facilitate international trade and to provide information to consumers, labelling requirements have been set up in many countries. Quantitative real-time polymerase chain reaction (qPCR) is currently the method of choice for detection, identification and quantification of GMOs. This has been critically assessed and the requirements for the method performance have been set. Nevertheless, there are challenges that should still be highlighted, such as measuring the quantity and quality of DNA, and determining the qPCR efficiency, possible sequence mismatches, characteristics of taxon-specific genes and appropriate units of measurement, as these remain potential sources of measurement uncertainty. To overcome these problems and to cope with the continuous increase in the number and variety of GMOs, new approaches are needed. Statistical strategies of quantification have already been proposed and expanded with the development of digital PCR. The first attempts have been made to use new generation sequencing also for quantitative purposes, although accurate quantification of the contents of GMOs using this technology is still a challenge for the future, and especially for mixed samples. New approaches are needed also for the quantification of stacks, and for potential quantification of organisms produced by new plant breeding techniques.

Biological quarantine on international waters: an initiative for onboard protocols

Science.gov (United States)

Takano, Yoshinori; Yano, Hajime; Funase, Ryu; Sekine, Yasuhito; Takai, Ken

2012-07-01

The research vessel Chikyu is expanding new frontiers in science, technology, and international collaboration through deep-sea expedition. The Chikyu (length: 210 m, gross tonnage: 56752 tons) has advanced and comprehensive scientific research facilities. One of the scientific purposes of the vessel is to investigate into unexplored biosphere (i.e., undescribed extremophiles) on the Earth. Therefore, "the onboard laboratory" provides us systematic microbiological protocols with a physical containment situation. In parallel, the onboard equipments provide sufficient space for fifty scientists and technical support staff. The helicopter deck also supports various logistics through transporting by a large scale helicopter (See, http://www.jamstec.go.jp/chikyu/eng/). Since the establishment of Panel on Planetary Protection (PPP) in Committee on Space Research (COSPAR), we have an international consensus about the development and promulgation of planetary protection knowledge, policy, and plans to prevent the harmful effects of biological contamination on the Earth (e.g., Rummel, 2002). However, the matter to select a candidate location of initial quarantine at BSL4 level is often problematic. To answer the key issue, we suggest that international waters can be a meaningful option with several advantages to conduct initial onboard-biological quarantine investigation. Hence, the research vessel Chikyu is promising for further PPP requirements (e.g., Enceladus sample return project: Tsou et al., 2012). Rummel, J., Seeking an international consensus in planetary protection: COSPAR's planetary protection panel. Advances in Space Research, 30, 1573-1575 (2002). Tsou, P. et al. LIFE: Life Investigation For Enceladus - A Sample Return Mission Concept in Search for Evidence of Life. Astrobiology, in press.

The Quantification Process for the PRiME-U34i

International Nuclear Information System (INIS)

Hwang, Mee-Jeong; Han, Sang-Hoon; Yang, Joon-Eon

2006-01-01

In this paper, we introduce the quantification process for the PRIME-U34i, which is the merged model of ETs (Event Trees) and FTs (Fault Trees) for the level 1 internal PSA of UCN 3 and 4. PRiME-U34i has one top event. Therefore, the quantification process is changed to a simplified method when compared to the past one. In the past, we used the text file called a user file to control the quantification process. However, this user file is so complicated that it is difficult for a non-expert to understand it. Moreover, in the past PSA, ET and FT were separated but in PRiMEU34i, ET and FT were merged together. Thus, the quantification process is different. This paper is composed of five sections. In section 2, we introduce the construction of the one top model. Section 3 shows the quantification process used in the PRiME-U34i. Section 4 describes the post processing. Last section is the conclusions

Quantification of endocrine disruptors and pesticides in water by gas chromatography-tandem mass spectrometry. Method validation using weighted linear regression schemes.

Science.gov (United States)

Mansilha, C; Melo, A; Rebelo, H; Ferreira, I M P L V O; Pinho, O; Domingues, V; Pinho, C; Gameiro, P

2010-10-22

A multi-residue methodology based on a solid phase extraction followed by gas chromatography-tandem mass spectrometry was developed for trace analysis of 32 compounds in water matrices, including estrogens and several pesticides from different chemical families, some of them with endocrine disrupting properties. Matrix standard calibration solutions were prepared by adding known amounts of the analytes to a residue-free sample to compensate matrix-induced chromatographic response enhancement observed for certain pesticides. Validation was done mainly according to the International Conference on Harmonisation recommendations, as well as some European and American validation guidelines with specifications for pesticides analysis and/or GC-MS methodology. As the assumption of homoscedasticity was not met for analytical data, weighted least squares linear regression procedure was applied as a simple and effective way to counteract the greater influence of the greater concentrations on the fitted regression line, improving accuracy at the lower end of the calibration curve. The method was considered validated for 31 compounds after consistent evaluation of the key analytical parameters: specificity, linearity, limit of detection and quantification, range, precision, accuracy, extraction efficiency, stability and robustness. Copyright © 2010 Elsevier B.V. All rights reserved.

Validated reverse transcription droplet digital PCR serves as a higher order method for absolute quantification of Potato virus Y strains.

Science.gov (United States)

Mehle, Nataša; Dobnik, David; Ravnikar, Maja; Pompe Novak, Maruša

2018-05-03

RNA viruses have a great potential for high genetic variability and rapid evolution that is generated by mutation and recombination under selection pressure. This is also the case of Potato virus Y (PVY), which comprises a high diversity of different recombinant and non-recombinant strains. Consequently, it is hard to develop reverse transcription real-time quantitative PCR (RT-qPCR) with the same amplification efficiencies for all PVY strains which would enable their equilibrate quantification; this is specially needed in mixed infections and other studies of pathogenesis. To achieve this, we initially transferred the PVY universal RT-qPCR assay to a reverse transcription droplet digital PCR (RT-ddPCR) format. RT-ddPCR is an absolute quantification method, where a calibration curve is not needed, and it is less prone to inhibitors. The RT-ddPCR developed and validated in this study achieved a dynamic range of quantification over five orders of magnitude, and in terms of its sensitivity, it was comparable to, or even better than, RT-qPCR. RT-ddPCR showed lower measurement variability. We have shown that RT-ddPCR can be used as a reference tool for the evaluation of different RT-qPCR assays. In addition, it can be used for quantification of RNA based on in-house reference materials that can then be used as calibrators in diagnostic laboratories.

High-Performance Thin-Layer Chromatographic Quantification of Rosmarinic Acid and Rutin in Abnormal Savda Munziq

Directory of Open Access Journals (Sweden)

S. G. Tian

2013-01-01

Full Text Available A high-performance thin-layer chromatographic (HPTLC method has been established for simultaneous analysis of rosmarinic acid and rutin in Abnormal Savda Munziq (ASMq. A methanol extract of ASMq was used for quantification. The compounds were separated on silica gel H thin layer plate with ethyl acetate-formic acid-acetic acid-water 15 : 1 : 1 : 1.5 (v/v as a developer, trichloroethanol as the color reagent. The plates were scanned at 365 nm. The linear calibration data of rosmarinic acid and rutin were in the range of 0.0508 to 0.2540 μg (r=0.9964, 0.2707 to 1.35354 μg (r=0.9981, respectively. The recovery rate of rosmarinic acid was 99.17% (RSD = 2.92% and rutin was 95.24% (RSD = 2.38%. The method enables rapid screening, precise, selective, and sensitive quantification for pharmaceutical analysis.

Artifacts Quantification of Metal Implants in MRI

Science.gov (United States)

Vrachnis, I. N.; Vlachopoulos, G. F.; Maris, T. G.; Costaridou, L. I.

2017-11-01

The presence of materials with different magnetic properties, such as metal implants, causes distortion of the magnetic field locally, resulting in signal voids and pile ups, i.e. susceptibility artifacts in MRI. Quantitative and unbiased measurement of the artifact is prerequisite for optimization of acquisition parameters. In this study an image gradient based segmentation method is proposed for susceptibility artifact quantification. The method captures abrupt signal alterations by calculation of the image gradient. Then the artifact is quantified in terms of its extent by an automated cross entropy thresholding method as image area percentage. The proposed method for artifact quantification was tested in phantoms containing two orthopedic implants with significantly different magnetic permeabilities. The method was compared against a method proposed in the literature, considered as a reference, demonstrating moderate to good correlation (Spearman’s rho = 0.62 and 0.802 in case of titanium and stainless steel implants). The automated character of the proposed quantification method seems promising towards MRI acquisition parameter optimization.

Quantification of trace-level DNA by real-time whole genome amplification.

Science.gov (United States)

Kang, Min-Jung; Yu, Hannah; Kim, Sook-Kyung; Park, Sang-Ryoul; Yang, Inchul

2011-01-01

Quantification of trace amounts of DNA is a challenge in analytical applications where the concentration of a target DNA is very low or only limited amounts of samples are available for analysis. PCR-based methods including real-time PCR are highly sensitive and widely used for quantification of low-level DNA samples. However, ordinary PCR methods require at least one copy of a specific gene sequence for amplification and may not work for a sub-genomic amount of DNA. We suggest a real-time whole genome amplification method adopting the degenerate oligonucleotide primed PCR (DOP-PCR) for quantification of sub-genomic amounts of DNA. This approach enabled quantification of sub-picogram amounts of DNA independently of their sequences. When the method was applied to the human placental DNA of which amount was accurately determined by inductively coupled plasma-optical emission spectroscopy (ICP-OES), an accurate and stable quantification capability for DNA samples ranging from 80 fg to 8 ng was obtained. In blind tests of laboratory-prepared DNA samples, measurement accuracies of 7.4%, -2.1%, and -13.9% with analytical precisions around 15% were achieved for 400-pg, 4-pg, and 400-fg DNA samples, respectively. A similar quantification capability was also observed for other DNA species from calf, E. coli, and lambda phage. Therefore, when provided with an appropriate standard DNA, the suggested real-time DOP-PCR method can be used as a universal method for quantification of trace amounts of DNA.

PWR Secondary Water Chemistry Control Status: A Summary of Industry Initiatives, Experience and Trends Relative to the EPRI PWR Secondary Water Chemistry Guidelines

International Nuclear Information System (INIS)

Fruzzetti, Keith; Choi, Samuel

2012-09-01

The latest revision of the EPRI Pressurized Water Reactor (PWR) Secondary Water Chemistry Guidelines was issued in February 2009. The Guidelines continue to focus on minimizing stress corrosion cracking (SCC) of steam generator tubes, as well as minimizing degradation of other major components / subsystems of the secondary system. The Guidelines provide a technically-based framework for a plant-specific and effective PWR secondary water chemistry program. With the issuance of Revision 7 of the Guidelines in 2009, many plants have implemented changes that allow greater flexibility on startup. For example, the previous Guidelines (Revision 6) contained a possible low power hold at 5% power and a possible mid power hold at approximately 30% power based on chemistry constraints. Revision 7 has established a range over which a plant-specific value can be chosen for the possible low power hold (between 5% and 15%) and mid power hold (between 30% and 50%). This has provided plants the ability to establish significant plant evolutions prior to reaching the possible power hold; such as establishing seal steam to the condenser, placing feed pumps in service, or initiating forward flow of heater drains. The application of this flexibility in the industry will be explored. This paper also highlights the major initiatives and industry trends with respect to PWR secondary chemistry; and outlines the recent work to effectively address them. These will be presented in light of recent operating experience, as derived from EPRI's PWR Chemistry Monitoring and Assessment (CMA) program (which contains more than 400 cycles of operating chemistry data). (authors)

Collagen Quantification in Tissue Specimens.

Science.gov (United States)

Coentro, João Quintas; Capella-Monsonís, Héctor; Graceffa, Valeria; Wu, Zhuning; Mullen, Anne Maria; Raghunath, Michael; Zeugolis, Dimitrios I

2017-01-01

Collagen is the major extracellular protein in mammals. Accurate quantification of collagen is essential in the biomaterials (e.g., reproducible collagen scaffold fabrication), drug discovery (e.g., assessment of collagen in pathophysiologies, such as fibrosis), and tissue engineering (e.g., quantification of cell-synthesized collagen) fields. Although measuring hydroxyproline content is the most widely used method to quantify collagen in biological specimens, the process is very laborious. To this end, the Sircol™ Collagen Assay is widely used due to its inherent simplicity and convenience. However, this method leads to overestimation of collagen content due to the interaction of Sirius red with basic amino acids of non-collagenous proteins. Herein, we describe the addition of an ultrafiltration purification step in the process to accurately determine collagen content in tissues.

Cutset Quantification Error Evaluation for Shin-Kori 1 and 2 PSA model

International Nuclear Information System (INIS)

Choi, Jong Soo

2009-01-01

Probabilistic safety assessments (PSA) for nuclear power plants (NPPs) are based on the minimal cut set (MCS) quantification method. In PSAs, the risk and importance measures are computed from a cutset equation mainly by using approximations. The conservatism of the approximations is also a source of quantification uncertainty. In this paper, exact MCS quantification methods which are based on the 'sum of disjoint products (SDP)' logic and Inclusion-exclusion formula are applied and the conservatism of the MCS quantification results in Shin-Kori 1 and 2 PSA is evaluated

Calculation of intercepted runoff depth based on stormwater quality and environmental capacity of receiving waters for initial stormwater pollution management.

Science.gov (United States)

Peng, Hai-Qin; Liu, Yan; Gao, Xue-Long; Wang, Hong-Wu; Chen, Yi; Cai, Hui-Yi

2017-11-01

While point source pollutions have gradually been controlled in recent years, the non-point source pollution problem has become increasingly prominent. The receiving waters are frequently polluted by the initial stormwater from the separate stormwater system and the wastewater from sewage pipes through stormwater pipes. Consequently, calculating the intercepted runoff depth has become a problem that must be resolved immediately for initial stormwater pollution management. The accurate calculation of intercepted runoff depth provides a solid foundation for selecting the appropriate size of intercepting facilities in drainage and interception projects. This study establishes a separate stormwater system for the Yishan Building watershed of Fuzhou City using the InfoWorks Integrated Catchment Management (InfoWorks ICM), which can predict the stormwater flow velocity and the flow of discharge outlet after each rainfall. The intercepted runoff depth is calculated from the stormwater quality and environmental capacity of the receiving waters. The average intercepted runoff depth from six rainfall events is calculated as 4.1 mm based on stormwater quality. The average intercepted runoff depth from six rainfall events is calculated as 4.4 mm based on the environmental capacity of the receiving waters. The intercepted runoff depth differs when calculated from various aspects. The selection of the intercepted runoff depth depends on the goal of water quality control, the self-purification capacity of the water bodies, and other factors of the region.

Stereological quantification of mast cells in human synovium

DEFF Research Database (Denmark)

Damsgaard, T E; Sørensen, Flemming Brandt; Herlin, T

1999-01-01

Mast cells participate in both the acute allergic reaction as well as in chronic inflammatory diseases. Earlier studies have revealed divergent results regarding the quantification of mast cells in the human synovium. The aim of the present study was therefore to quantify these cells in the human...... synovium, using stereological techniques. Different methods of staining and quantification have previously been used for mast cell quantification in human synovium. Stereological techniques provide precise and unbiased information on the number of cell profiles in two-dimensional tissue sections of......, in this case, human synovium. In 10 patients suffering from osteoarthritis a median of 3.6 mast cells/mm2 synovial membrane was found. The total number of cells (synoviocytes, fibroblasts, lymphocytes, leukocytes) present was 395.9 cells/mm2 (median). The mast cells constituted 0.8% of all the cell profiles...

Validation and evaluation of an HPLC methodology for the quantification of the potent antimitotic compound (+)-discodermolide in the Caribbean marine sponge Discodermia dissoluta.

Science.gov (United States)

Valderrama, Katherine; Castellanos, Leonardo; Zea, Sven

2010-08-01

The sponge Discodermia dissoluta is the source of the potent antimitotic compound (+)-discodermolide. The relatively abundant and shallow populations of this sponge in Santa Marta, Colombia, allow for studies to evaluate the natural and biotechnological supply options of (+)-discodermolide. In this work, an RP-HPLC-UV methodology for the quantification of (+)-discodermolide from sponge samples was tested and validated. Our protocol for extracting this compound from the sponge included lyophilization, exhaustive methanol extraction, partitioning using water and dichloromethane, purification of the organic fraction in RP-18 cartridges and then finally retrieving the (+)-discodermolide in the methanol-water (80:20 v/v) fraction. This fraction was injected into an HPLC system with an Xterra RP-18 column and a detection wavelength of 235 nm. The calibration curve was linear, making it possible to calculate the LODs and quantification in these experiments. The intra-day and inter-day precision showed relative standard deviations lower than 5%. The accuracy, determined as the percentage recovery, was 99.4%. Nine samples of the sponge from the Bahamas, Bonaire, Curaçao and Santa Marta had concentrations of (+)-discodermolide ranging from 5.3 to 29.3 microg/g(-1) of wet sponge. This methodology is quick and simple, allowing for the quantification in sponges from natural environments, in situ cultures or dissociated cells.

Dataset exploited for the development and validation of automated cyanobacteria quantification algorithm, ACQUA

Directory of Open Access Journals (Sweden)

Emanuele Gandola

2016-09-01

Full Text Available The estimation and quantification of potentially toxic cyanobacteria in lakes and reservoirs are often used as a proxy of risk for water intended for human consumption and recreational activities. Here, we present data sets collected from three volcanic Italian lakes (Albano, Vico, Nemi that present filamentous cyanobacteria strains at different environments. Presented data sets were used to estimate abundance and morphometric characteristics of potentially toxic cyanobacteria comparing manual Vs. automated estimation performed by ACQUA (“ACQUA: Automated Cyanobacterial Quantification Algorithm for toxic filamentous genera using spline curves, pattern recognition and machine learning” (Gandola et al., 2016 [1]. This strategy was used to assess the algorithm performance and to set up the denoising algorithm. Abundance and total length estimations were used for software development, to this aim we evaluated the efficiency of statistical tools and mathematical algorithms, here described. The image convolution with the Sobel filter has been chosen to denoise input images from background signals, then spline curves and least square method were used to parameterize detected filaments and to recombine crossing and interrupted sections aimed at performing precise abundances estimations and morphometric measurements. Keywords: Comparing data, Filamentous cyanobacteria, Algorithm, Deoising, Natural sample

PCR amplification of repetitive sequences as a possible approach in relative species quantification

DEFF Research Database (Denmark)

Ballin, Nicolai Zederkopff; Vogensen, Finn Kvist; Karlsson, Anders H

2012-01-01

Abstract Both relative and absolute quantifications are possible in species quantification when single copy genomic DNA is used. However, amplification of single copy genomic DNA does not allow a limit of detection as low as one obtained from amplification of repetitive sequences. Amplification...... of repetitive sequences is therefore frequently used in absolute quantification but problems occur in relative quantification as the number of repetitive sequences is unknown. A promising approach was developed where data from amplification of repetitive sequences were used in relative quantification of species...... to relatively quantify the amount of chicken DNA in a binary mixture of chicken DNA and pig DNA. However, the designed PCR primers lack the specificity required for regulatory species control....

Precursor evolution and SCC initiation of cold-worked alloy 690 in simulated PWR primary water

Energy Technology Data Exchange (ETDEWEB)

Zhai, Ziqing; Kruska, Karen; Toloczko, Mychailo B.; Bruemmer, Stephen M.

2017-03-27

Stress corrosion crack initiation of two thermally-treated, cold-worked (CW) alloy 690 materials was investigated in 360oC simulated PWR primary water using constant load tensile (CLT) tests and blunt notch compact tension (BNCT) tests equipped with direct current potential drop (DCPD) for in-situ detection of cracking. SCC initiation was not detected by DCPD for the 21% and 31%CW CLT specimens loaded at their yield stress after ~9,220 h, however intergranular (IG) precursor damage and isolated surface cracks were observed on the specimens. The two 31%CW BNCT specimens loaded at moderate stress intensity after several cyclic loading ramps showed DCPD-indicated crack initiation after 10,400h exposure at constant stress intensity, which resulted from significant growth of IG cracks. The 21%CW BNCT specimens only exhibited isolated small IG surface cracks and showed no apparent DCPD change throughout the test. Interestingly, post-test cross-section examinations revealed many grain boundary (GB) nano-cavities in the bulk of all the CLT and BNCT specimens particularly for the 31%CW materials. Cavities were also found along GBs extending to the surface suggesting an important role in crack nucleation. This paper provides an overview of the evolution of GB cavities and will discuss their effects on crack initiation in CW alloy 690.

Application of the homology method for quantification of low-attenuation lung region in patients with and without COPD

Directory of Open Access Journals (Sweden)

Nishio M

2016-09-01

Full Text Available Mizuho Nishio,1 Kazuaki Nakane,2 Yutaka Tanaka3 1Clinical PET Center, Institute of Biomedical Research and Innovation, Hyogo, Japan; 2Department of Molecular Pathology, Osaka University Graduate School of Medicine and Health Science, Osaka, Japan; 3Department of Radiology, Chibune General Hospital, Osaka, Japan Background: Homology is a mathematical concept that can be used to quantify degree of contact. Recently, image processing with the homology method has been proposed. In this study, we used the homology method and computed tomography images to quantify emphysema.Methods: This study included 112 patients who had undergone computed tomography and pulmonary function test. Low-attenuation lung regions were evaluated by the homology method, and homology-based emphysema quantification (b0, b1, nb0, nb1, and R was performed. For comparison, the percentage of low-attenuation lung area (LAA% was also obtained. Relationships between emphysema quantification and pulmonary function test results were evaluated by Pearson’s correlation coefficients. In addition to the correlation, the patients were divided into the following three groups based on guidelines of the Global initiative for chronic Obstructive Lung Disease: Group A, nonsmokers; Group B, smokers without COPD, mild COPD, and moderate COPD; Group C, severe COPD and very severe COPD. The homology-based emphysema quantification and LAA% were compared among these groups.Results: For forced expiratory volume in 1 second/forced vital capacity, the correlation coefficients were as follows: LAA%, -0.603; b0, -0.460; b1, -0.500; nb0, -0.449; nb1, -0.524; and R, -0.574. For forced expiratory volume in 1 second, the coefficients were as follows: LAA%, -0.461; b0, -0.173; b1, -0.314; nb0, -0.191; nb1, -0.329; and R, -0.409. Between Groups A and B, difference in nb0 was significant (P-value = 0.00858, and those in the other types of quantification were not significant.Conclusion: Feasibility of the

Quantification of cellular uptake of DNA nanostructures by qPCR

DEFF Research Database (Denmark)

Okholm, Anders Hauge; Nielsen, Jesper Sejrup; Vinther, Mathias

2014-01-01

interactions and structural and functional features of the DNA delivery device must be thoroughly investigated. Here, we present a rapid and robust method for the precise quantification of the component materials of DNA origami structures capable of entering cells in vitro. The quantification is performed...

X-ray photoelectron spectroscopy study of the initial oxidation of uranium metal in oxygen+water-vapour mixtures

International Nuclear Information System (INIS)

Allen, G.C.; Tucker, P.M.; Lewis, R.A.

1984-01-01

X-ray photoelectron spectroscopy (X.p.s.) has been used to study the chemical nature of the oxide film initially produced on clean uranium metal in oxygen + water-vapour atmospheres. The rate of reaction has been monitored and the nature of the surface film determined. From a consideration of the O 1s and U 4f X.p. spectra it has been possible to advance a mechanism which explains the complex nature of the surface oxide and the lack of satellite structure in the spectra. This is postulated to be a consequence of the way in which OH - is involved in the growth of the oxide and the presence of hydrogen in the surface film. The presence of oxygen retards the water oxidation reaction by inhibiting the decomposition of water vapour at the gas/oxide interface. (author)

X-ray photoelectron spectroscopy study of the initial oxidation of uranium metal in oxygen+water-vapour mixtures

Energy Technology Data Exchange (ETDEWEB)

Allen, G.C.; Tucker, P.M.; Lewis, R.A. (Central Electricity Generating Board, Berkeley (UK). Berkeley Nuclear Labs.)

1984-08-01

X-ray photoelectron spectroscopy (X.p.s.) has been used to study the chemical nature of the oxide film initially produced on clean uranium metal in oxygen + water-vapour atmospheres. The rate of reaction has been monitored and the nature of the surface film determined. From a consideration of the O 1s and U 4f X.p. spectra it has been possible to advance a mechanism which explains the complex nature of the surface oxide and the lack of satellite structure in the spectra. This is postulated to be a consequence of the way in which OH/sup -/ is involved in the growth of the oxide and the presence of hydrogen in the surface film. The presence of oxygen retards the water oxidation reaction by inhibiting the decomposition of water vapour at the gas/oxide interface.

Determining water reservoir characteristics with global elevation data

NARCIS (Netherlands)

van Bemmelen, C. W T; Mann, M.; de Ridder, M.P.; Rutten, M.M.; van de Giesen, N.C.

2016-01-01

Quantification of human impact on water, sediment, and nutrient fluxes at the global scale demands characterization of reservoirs with an accuracy that is presently unavailable. This letter presents a new method, based on virtual dam placement, to make accurate estimations of area-volume

Intracellular water exchange for measuring the dry mass, water mass and changes in chemical composition of living cells.

Directory of Open Access Journals (Sweden)

Francisco Feijó Delgado

Full Text Available We present a method for direct non-optical quantification of dry mass, dry density and water mass of single living cells in suspension. Dry mass and dry density are obtained simultaneously by measuring a cell's buoyant mass sequentially in an H2O-based fluid and a D2O-based fluid. Rapid exchange of intracellular H2O for D2O renders the cell's water content neutrally buoyant in both measurements, and thus the paired measurements yield the mass and density of the cell's dry material alone. Utilizing this same property of rapid water exchange, we also demonstrate the quantification of intracellular water mass. In a population of E. coli, we paired these measurements to estimate the percent dry weight by mass and volume. We then focused on cellular dry density - the average density of all cellular biomolecules, weighted by their relative abundances. Given that densities vary across biomolecule types (RNA, DNA, protein, we investigated whether we could detect changes in biomolecular composition in bacteria, fungi, and mammalian cells. In E. coli, and S. cerevisiae, dry density increases from stationary to exponential phase, consistent with previously known increases in the RNA/protein ratio from up-regulated ribosome production. For mammalian cells, changes in growth conditions cause substantial shifts in dry density, suggesting concurrent changes in the protein, nucleic acid and lipid content of the cell.

Molecular quantification of genes encoding for green-fluorescent proteins

DEFF Research Database (Denmark)

Felske, A; Vandieken, V; Pauling, B V

2003-01-01

A quantitative PCR approach is presented to analyze the amount of recombinant green fluorescent protein (gfp) genes in environmental DNA samples. The quantification assay is a combination of specific PCR amplification and temperature gradient gel electrophoresis (TGGE). Gene quantification...... PCR strategy is a highly specific and sensitive way to monitor recombinant DNA in environments like the efflux of a biotechnological plant....

A highly sensitive method for quantification of iohexol

DEFF Research Database (Denmark)

Schulz, A.; Boeringer, F.; Swifka, J.

2014-01-01

-chromatography-electrospray-massspectrometry (LC-ESI-MS) approach using the multiple reaction monitoring mode for iohexol quantification. In order to test whether a significantly decreased amount of iohexol is sufficient for reliable quantification, a LC-ESI-MS approach was assessed. We analyzed the kinetics of iohexol in rats after application...... of different amounts of iohexol (15 mg to 150 1.tg per rat). Blood sampling was conducted at four time points, at 15, 30, 60, and 90 min, after iohexol injection. The analyte (iohexol) and the internal standard (iotha(amic acid) were separated from serum proteins using a centrifugal filtration device...... with a cut-off of 3 kDa. The chromatographic separation was achieved on an analytical Zorbax SB C18 column. The detection and quantification were performed on a high capacity trap mass spectrometer using positive ion ESI in the multiple reaction monitoring (MRM) mode. Furthermore, using real-time polymerase...

Determination of Trace Level Triclosan in Water by Online Preconcentration and HPLC-UV Diode Array

Science.gov (United States)

An online high performance liquid chromatography (HPLC) method for the detection and quantification of trace levels of triclosan in water is discussed. Triclosan, an anti-bacterial agent, and related compounds have been shown to reach municipal waste waters through the disposal ...

DWAF water services IAM strategy positioned within the context of other major national IAM initiatives

CSIR Research Space (South Africa)

Wall, K

2008-05-01

Full Text Available STRATEGY POSITIONED WITHIN THE CONTEXT OF OTHER MAJOR NATIONAL IAM INITIATIVES Nino Manus, Kribbs Moodley, Kevin Wall, Louis Boshoff and Arno Ottermann Department of Water Affairs and Forestry, Private Bag X313, Pretoria 0001. ManusA@dwaf.gov.za P D... into one or other of 9 “solution types”, viz: • Awareness • Finance • Guidelines • HR (i.e. including ski l ls and appointments) • Legal and procurement • Monitoring and evaluation • Management and leadership • Operation and maintenance...

Terahertz identification and quantification of penicillamine enantiomers

International Nuclear Information System (INIS)

Ji Te; Zhao Hongwei; Chen Min; Xiao Tiqiao; Han Pengyu

2013-01-01

Identification and characterization of L-, D- and DL- penicillamine were demonstrated by Terahertz time-domain spectroscopy (THz-TDS). To understand the physical origins of the low frequency resonant modes, the density functional theory (DFT) was adopted for theoretical calculation. It was found that the collective THz frequency motions were decided by the intramolecular and intermolecular hydrogen bond interactions. Moreover, the quantification of penicillamine enantiomers mixture was demonstrated by a THz spectra fitting method with a relative error of less than 3.5%. This technique can be a valuable tool for the discrimination and quantification of chiral drugs in pharmaceutical industry. (authors)

Hot Topics/New Initiatives | Drinking Water in New England ...

Science.gov (United States)

2017-07-06

Information on Drinking Water in New England. Major Topics covered include: Conservation, Private Wells, Preventing Contamination, Drinking Water Sources, Consumer Confidence Reports, and Drinking Water Awards.

Quantification by Raman spectroscopy of the gamma radiation effects in water purification

International Nuclear Information System (INIS)

Perez C, V.M.; Santiago J, P.; Castano, V.M.

1999-01-01

The world problem about water pollution has been confronted by traditional methods such as: chlorination, filtration, etc. In this work is presented an alternative method, which consists in to radiate different concentrations of simulated polluted water (purified water + thinner) at different gamma radiation doses. The structural changes were analysed by Raman spectroscopy. Using a 52.5 Krad dose it was possible to eliminate all the thinner chemical linkages, which appear in the Raman spectra corresponding to the 87.5/12.5 water/thinner mixture. (Author)

On the Definition Mechanism of Initial Water Rights%初始水权界定机制的比较与选择

Institute of Scientific and Technical Information of China (English)

王丙毅

2015-01-01

水权界定即水权的初次分配及其权利主体的清晰化，是水权配置过程中的首要环节，也是水权交易和水市场形成的基础和前提。水权配置机制主要包括行政机制、市场机制和自主协商机制。利用完全信息静态博弈模型和动态重复博弈模型对水权界定机制进行分析所得出的结论是：私人之间以竞争的方式来界定初始水权，会造成“公地悲剧”，甚至分水冲突的发生；自主协商机制虽然能够在小规模人群之间实现初始水权的分配，但其分水协议不具有强制性约束力，特别是在人数较多的情况下，分水协议更不具有约束力。唯有民主协商基础上的政府行政机制才是水权界定的最佳选择。%To definite the initial water rights means the first allocation of water rights and the clear of water rights owner witch is not only the first step in the process of water rights allocation, but also the basis and premise of water rights trading and water market.The mechanisms of allocation of Water rights generally include administrative mechanism, market mechanism and independent negotiation mechanism.Through the analysis by u-sing the complete information static game model and dynamic game model for water rights distribution mechanism , we concluded that:the competi-tion between private to the way to define the initial water rights , will cause the"tragedy of the commons", even the water conflict;autonomous ne-gotiation mechanism can realize the initial allocation of water rights in small groups , but the water diversion agreement is not mandatory and bind-ing, especially in a large number of cases, the water protocol is not binding.Only on the basis of deliberative democracy, government administrative mechanism is the best choice of the definition of water rights .

Comparison of DNA Quantification Methods for Next Generation Sequencing.

Science.gov (United States)

Robin, Jérôme D; Ludlow, Andrew T; LaRanger, Ryan; Wright, Woodring E; Shay, Jerry W

2016-04-06

Next Generation Sequencing (NGS) is a powerful tool that depends on loading a precise amount of DNA onto a flowcell. NGS strategies have expanded our ability to investigate genomic phenomena by referencing mutations in cancer and diseases through large-scale genotyping, developing methods to map rare chromatin interactions (4C; 5C and Hi-C) and identifying chromatin features associated with regulatory elements (ChIP-seq, Bis-Seq, ChiA-PET). While many methods are available for DNA library quantification, there is no unambiguous gold standard. Most techniques use PCR to amplify DNA libraries to obtain sufficient quantities for optical density measurement. However, increased PCR cycles can distort the library's heterogeneity and prevent the detection of rare variants. In this analysis, we compared new digital PCR technologies (droplet digital PCR; ddPCR, ddPCR-Tail) with standard methods for the titration of NGS libraries. DdPCR-Tail is comparable to qPCR and fluorometry (QuBit) and allows sensitive quantification by analysis of barcode repartition after sequencing of multiplexed samples. This study provides a direct comparison between quantification methods throughout a complete sequencing experiment and provides the impetus to use ddPCR-based quantification for improvement of NGS quality.

Quantification of risk considering external events on the change of allowed outage time and the preventive maintenance during power operation

Energy Technology Data Exchange (ETDEWEB)

Kang, D. J.; Kim, K. Y.; Yang, J. E

2001-03-01

In this study, for the major safety systems of Ulchin Units 3/4, we quantify the risk on the change of AOT and the PM during power operation to identify the effects on the results of external events PSA when nuclear power plant changes such as allowed outage time are requested. The systems for which the risks on the change of allowed outage time are quantified are High Pressure Safety Injection System (HPSIS), Containment Spray System (CSS), and Emergency Diesel Generator (EDG). The systems for which the risks on the PM during power operation are Low Pressure Safety Injection System (LPSIS), CSS, EDG, Essential Service Water System (ESWS). Following conclusions can be obtained through this study: 1)The increase of core damage frequency ({delta}CDF) on the change of AOT and the conditional core damage probability (CCDP) on the on-line PM of each system are differently quantified according to the cases of considering only internal events or only external events. . 2)It is expected that the quantification of risk including internal and external events is advantageous for the licensee of NPP if the regulatory acceptance criteria for the technical specification changes are relatively set up. However, it is expected to be disadvantageous for the licensee if the acceptance criteria are absolutely set up. 3)It is expected that the conduction on the quantification of only a fire event is sufficient when the quantification of external events PSA model is required for the plant changes of Korea Standard NPPs. 4)It is expected that the quantification of the increase of core damage frequency and the incremental conditional core damage probability on technical specification changes are not needed if the quantification results of those considering only internal events are below regulatory acceptance criteria and the external events PSA results are not greatly affected by the system availability. However, it is expected that the quantification of risk considering external events

Quantification of risk considering external events on the change of allowed outage time and the preventive maintenance during power operation

International Nuclear Information System (INIS)

Kang, D. J.; Kim, K. Y.; Yang, J. E.

2001-03-01

In this study, for the major safety systems of Ulchin Units 3/4, we quantify the risk on the change of AOT and the PM during power operation to identify the effects on the results of external events PSA when nuclear power plant changes such as allowed outage time are requested. The systems for which the risks on the change of allowed outage time are quantified are High Pressure Safety Injection System (HPSIS), Containment Spray System (CSS), and Emergency Diesel Generator (EDG). The systems for which the risks on the PM during power operation are Low Pressure Safety Injection System (LPSIS), CSS, EDG, Essential Service Water System (ESWS). Following conclusions can be obtained through this study: 1)The increase of core damage frequency (ΔCDF) on the change of AOT and the conditional core damage probability (CCDP) on the on-line PM of each system are differently quantified according to the cases of considering only internal events or only external events. . 2)It is expected that the quantification of risk including internal and external events is advantageous for the licensee of NPP if the regulatory acceptance criteria for the technical specification changes are relatively set up. However, it is expected to be disadvantageous for the licensee if the acceptance criteria are absolutely set up. 3)It is expected that the conduction on the quantification of only a fire event is sufficient when the quantification of external events PSA model is required for the plant changes of Korea Standard NPPs. 4)It is expected that the quantification of the increase of core damage frequency and the incremental conditional core damage probability on technical specification changes are not needed if the quantification results of those considering only internal events are below regulatory acceptance criteria and the external events PSA results are not greatly affected by the system availability. However, it is expected that the quantification of risk considering external events on

Iron-complexed adsorptive membrane for As(V) species in water

International Nuclear Information System (INIS)

Shinde, Rakesh N.; Das, Sadananda; Acharya, R.; Rajurkar, N.S.; Pandey, Ashok K.

2012-01-01

Highlights: ► Functionalized membrane was prepared by graft polymerization in host membrane. ► Fe 3+ ions fixed in membrane made it selective for As(V) ions. ► As(V) preconcentrated selectively in membrane samples was quantified by INAA. ► As(V) in ground water sample was easily quantified in 2–3 ppb using membrane. ► Total inorganic arsenic could be quantified by oxidation of As(III) to As(V). - Abstract: Selective preconcentration of a target analyte in the solid phase is an effective route not only to enhance detection limit of the conventional analytical method but also for elimination of interfering matrix. An adsorptive membrane was developed for selective preconcentration and quantification of ultra-trace (ppb) amounts of As(V) present in a variety of aqueous samples. The precursor membrane was prepared by UV-initiator induced graft polymerization of sulphate and phosphate bearing monomers (1:1 mol proportion) in pores of the host microporous poly(propylene) membrane. Fe 3+ ions were loaded in the precursor membrane to make it selective for As(V) ions. The presence of phosphate functional groups prevent leaching of Fe 3+ ions from the membrane when it comes in contact with solution like seawater having high ionic strength. The optimized membrane was characterized in terms of its physical structure, chemical structure and experimental conditions affecting As(V) uptake in the membrane. The possibility of quantifying total preconcentration of As content was also explored by converting As(III) to As(V). To quantify As(V), the membrane samples were subjected to instrumental neutron activation analysis (INAA). The studies carried in the present work showed that quantification of inorganic arsenic species in natural water samples is easily possible in 2–3 ppb concentration range.

Development of hydrate risk quantification in oil and gas production

Science.gov (United States)

Chaudhari, Piyush N.

order to reduce the parametric study that may require a long duration of time using The Colorado School of Mines Hydrate Kinetic Model (CSMHyK). The evolution of the hydrate plugging risk along flowline-riser systems is modeled for steady state and transient operations considering the effect of several critical parameters such as oil-hydrate slip, duration of shut-in, and water droplet size on a subsea tieback system. This research presents a novel platform for quantification of the hydrate plugging risk, which in-turn will play an important role in improving and optimizing current hydrate management strategies. The predictive strength of the hydrate risk quantification and hydrate prediction models will have a significant impact on flow assurance engineering and design with respect to building safe and efficient hydrate management techniques for future deep-water developments.

SPECT quantification of regional radionuclide distributions

International Nuclear Information System (INIS)

Jaszczak, R.J.; Greer, K.L.; Coleman, R.E.

1986-01-01

SPECT quantification of regional radionuclide activities within the human body is affected by several physical and instrumental factors including attenuation of photons within the patient, Compton scattered events, the system's finite spatial resolution and object size, finite number of detected events, partial volume effects, the radiopharmaceutical biokinetics, and patient and/or organ motion. Furthermore, other instrumentation factors such as calibration of the center-of-rotation, sampling, and detector nonuniformities will affect the SPECT measurement process. These factors are described, together with examples of compensation methods that are currently available for improving SPECT quantification. SPECT offers the potential to improve in vivo estimates of absorbed dose, provided the acquisition, reconstruction, and compensation procedures are adequately implemented and utilized. 53 references, 2 figures

Quantification of the soil-water balance under different veld ...

African Journals Online (AJOL)

The monthly herbage production, water-use efficiency (WUE: above-ground phytomass production per unit of evapotranspiration), surface runoff and soil loss were determined on grassland in three different ecological conditions, viz. poor, moderate and good, over a four year (1995/1996 to 1998/1999) period. In addition ...

Quantification of liver fat in the presence of iron overload.

Science.gov (United States)

Horng, Debra E; Hernando, Diego; Reeder, Scott B

2017-02-01

To evaluate the accuracy of R2* models (1/T 2 * = R2*) for chemical shift-encoded magnetic resonance imaging (CSE-MRI)-based proton density fat-fraction (PDFF) quantification in patients with fatty liver and iron overload, using MR spectroscopy (MRS) as the reference standard. Two Monte Carlo simulations were implemented to compare the root-mean-squared-error (RMSE) performance of single-R2* and dual-R2* correction in a theoretical liver environment with high iron. Fatty liver was defined as hepatic PDFF >5.6% based on MRS; only subjects with fatty liver were considered for analyses involving fat. From a group of 40 patients with known/suspected iron overload, nine patients were identified at 1.5T, and 13 at 3.0T with fatty liver. MRS linewidth measurements were used to estimate R2* values for water and fat peaks. PDFF was measured from CSE-MRI data using single-R2* and dual-R2* correction with magnitude and complex fitting. Spectroscopy-based R2* analysis demonstrated that the R2* of water and fat remain close in value, both increasing as iron overload increases: linear regression between R2* W and R2* F resulted in slope = 0.95 [0.79-1.12] (95% limits of agreement) at 1.5T and slope = 0.76 [0.49-1.03] at 3.0T. MRI-PDFF using dual-R2* correction had severe artifacts. MRI-PDFF using single-R2* correction had good agreement with MRS-PDFF: Bland-Altman analysis resulted in -0.7% (bias) ± 2.9% (95% limits of agreement) for magnitude-fit and -1.3% ± 4.3% for complex-fit at 1.5T, and -1.5% ± 8.4% for magnitude-fit and -2.2% ± 9.6% for complex-fit at 3.0T. Single-R2* modeling enables accurate PDFF quantification, even in patients with iron overload. 1 J. Magn. Reson. Imaging 2017;45:428-439. © 2016 International Society for Magnetic Resonance in Medicine.

Caffeine as an indicator for the quantification of untreated wastewater in karst systems.

Science.gov (United States)

Hillebrand, Olav; Nödler, Karsten; Licha, Tobias; Sauter, Martin; Geyer, Tobias

2012-02-01

Contamination from untreated wastewater leakage and related bacterial contamination poses a threat to drinking water quality. However, a quantification of the magnitude of leakage is difficult. The objective of this work is to provide a highly sensitive methodology for the estimation of the mass of untreated wastewater entering karst aquifers with rapid recharge. For this purpose a balance approach is adapted. It is based on the mass flow of caffeine in spring water, the load of caffeine in untreated wastewater and the daily water consumption per person in a spring catchment area. Caffeine is a source-specific indicator for wastewater, consumed and discharged in quantities allowing detection in a karst spring. The methodology was applied to estimate the amount of leaking and infiltrating wastewater to a well investigated karst aquifer on a daily basis. The calculated mean volume of untreated wastewater entering the aquifer was found to be 2.2 ± 0.5 m(3) d(-1) (undiluted wastewater). It corresponds to approximately 0.4% of the total amount of wastewater within the spring catchment. Copyright © 2011 Elsevier Ltd. All rights reserved.

Quantification of the Water-Energy Nexus in Beijing City Based on Copula Analysis

Science.gov (United States)

Cai, J.; Cai, Y.

2017-12-01

Water resource and energy resource are intimately and highly interwoven, called ``water-energy nexus", which poses challenges for the sustainable management of water resource and energy resource. In this research, the Copula analysis method is first proposed to be applied in "water-energy nexus" field to clarify the internal relationship of water resource and energy resource, which is a favorable tool to explore the relevance among random variables. Beijing City, the capital of China, is chosen as a case study. The marginal distribution functions of water resource and energy resource are analyzed first. Then the Binary Copula function is employed to construct the joint distribution function of "water-energy nexus" to quantify the inherent relationship between water resource and energy resource. The results show that it is more appropriate to apply Lognormal distribution to establish the marginal distribution function of water resource. Meanwhile, Weibull distribution is more feasible to describe the marginal distribution function of energy resource. Furthermore, it is more suitable to adopt the Bivariate Normal Copula function to construct the joint distribution function of "water-energy nexus" in Beijing City. The findings can help to identify and quantify the "water-energy nexus". In addition, our findings can provide reasonable policy recommendations on the sustainable management of water resource and energy resource to promote regional coordinated development.

National uranium project - an initiative to generate national database on uranium in drinking water of the country

International Nuclear Information System (INIS)

Sahoo, S.K.; Tripathi, R.M.; Jha, V.N.; Kumar, Ajay; Patra, A.C.; Vinod Kumar, A.

2018-01-01

Uranium is a naturally occurring lithophilic heavy element found in earth crust since inception of the earth. It is present naturally in all rock and soil and the concentration depends on geological formation and local geology. Groundwater interact with the host rocks and the wet weathering process facilitate the solubility of uranium in groundwater. The concentration of uranium in groundwater is influenced by geo-chemical parameters such as host rock characteristics and pH, Eh, ORP, ligands, etc. of the interacting water medium. Uranium is a radioactive element of low specific activity (25 Bq/mg) having both chemical and radiological toxicity but its chemical toxicity supersede the radio-toxicity. After a reporting of high uranium content in drinking water of Punjab, BARC has taken a pro-active initiative to generate a national database on uranium in drinking water in all the districts of India under National Uranium Project (NUP)

Quantification of two forms of green sulfur bacteria in their natural habitat using bacteriochlorophyll fluorescence spectra

Science.gov (United States)

Kharcheva, Anastasia V.; Zhiltsova, Anna A.; Lunina, Olga N.; Savvichev, Alexander S.; Patsaeva, Svetlana V.

2016-04-01

Detection of phototropic organisms in their natural habitat using optical instruments operating under water is urgently needed for many tasks of ecological monitoring. While fluorescence methods are widely applied nowadays to detect and characterize phytoplankton communities, the techniques for detection and recognition of anoxygenic phototrophs are considered challenging. Differentiation of the forms of anoxygenic green sulfur bacteria in natural water using spectral techniques remains problematic. Green sulfur bacteria could be found in two forms, green-colored (containing BChl d in pigment compound) and brown-colored (containing BChl e), have the special ecological niche in such reservoirs. Separate determination of these microorganisms by spectral methods is complicated because of similarity of spectral characteristics of their pigments. We describe the novel technique of quantification of two forms of green sulfur bacteria directly in water using bacteriochlorophyll fluorescence without pigment extraction. This technique is noninvasive and could be applied in remote mode in the water bodies with restricted water circulation to determine simultaneously concentrations of two forms of green sulfur bacteria in their natural habitat.

Greenhouse effect gases and climatic change: quantification and tools to fight against the emissions; Gaz a effet de serre et changement climatique: quantification et instruments de lutte contre des emissions

Energy Technology Data Exchange (ETDEWEB)

Bizec, R.F

2006-07-01

The greenhouse effect gases are considered responsible of the climatic change. Their consequences are numerous: increase of the sea level, displacement of the climatic areas, modification of the forests ecosystems, rarefaction of water, progressively decrease of glaciers... This fast modification of the climate would lead to the increase of natural hazards as hurricanes, storms, hails and so on. It is then a necessity to reduce as fast as possible the greenhouse effect gases. The author describes in a first part the methods of the greenhouse effect gases quantification and in the second part the tools to fight these gases, regulations, standards, economic tools, national tools and the projects. (A.L.B.)

Rapid and Easy Protocol for Quantification of Next-Generation Sequencing Libraries.

Science.gov (United States)

Hawkins, Steve F C; Guest, Paul C

2018-01-01

The emergence of next-generation sequencing (NGS) over the last 10 years has increased the efficiency of DNA sequencing in terms of speed, ease, and price. However, the exact quantification of a NGS library is crucial in order to obtain good data on sequencing platforms developed by the current market leader Illumina. Different approaches for DNA quantification are available currently and the most commonly used are based on analysis of the physical properties of the DNA through spectrophotometric or fluorometric methods. Although these methods are technically simple, they do not allow exact quantification as can be achieved using a real-time quantitative PCR (qPCR) approach. A qPCR protocol for DNA quantification with applications in NGS library preparation studies is presented here. This can be applied in various fields of study such as medical disorders resulting from nutritional programming disturbances.

Comparative analysis of experimental methods for quantification of small amounts of oil in water

DEFF Research Database (Denmark)

Katika, Konstantina; Ahkami, Mehrdad; Fosbøl, Philip Loldrup

2016-01-01

) and the quantification of oil is then difficult. In this study, we compare four approaches to determine the volume of the collected oil fraction in core flooding effluents. The four methods are: Image analysis, UV/visible spectroscopy, liquid scintillation counting, and low-field nuclear magnetic resonance (NMR...... comparison to a pre-made standard curve. Image analysis, UV/visible spectroscopy, and liquid scintillation counting quantify only the oil fraction by comparing with a pre-made standard curve. The image analysis technique is reliable when more than 0.1 ml oil is present, whereas liquid scintillation counting...... performs well when less than 0.6 ml oil is present. Both UV/visible spectroscopy and NMR spectrometry produced high accuracy results in the entire studied range (0.006-1.1 ml). In terms of laboratory time, the liquid scintillation counting is the fastest and least user dependent, whereas the NMR...

The advanced EctoSys electrolysis as an integral part of a ballast water treatment system.

Science.gov (United States)

Echardt, J; Kornmueller, A

2009-01-01

A full-scale 500 m(3)/h ballast water treatment system was tested according to the landbased type approval procedure of the International Maritime Organization (IMO). The system consists of disc filters followed by the advanced EctoSys electrolysis as an integral part for disinfection. The test water quality exceeded by far the minimum requirements for type approval testing. Due to the properties of the special electrodes used together with the striking disinfection effect, the disinfectants assumed to be produced inline by the EctoSys cell in river water were hydroxyl radicals, while in brackish water additionally chlorine and consequently the more stable bromine were formed. In river water, no residual oxidants could be detected in accordance with the assumed production of not responding, highly-reactive and short-living hydroxyl radicals. Accordingly, disinfection byproduct (DBP) formation was very low and close to the limit of quantification in river water. While in brackish water, initial residual oxidant concentrations were maximum 2 mg/L as chlorine and mostly brominated DBP (especially bromoform and bromate) were found. Overall considering this worst case test approach, the DBP concentrations of the treated effluents were below or in the range of the WHO Drinking Water Guideline values and therefore evaluated as acceptable for discharge to the environment. The stringent discharge standard by IMO concerning viable organisms was fully met in river and brackish water, proving the disinfection efficiency of the EctoSys electrolysis against smaller plankton and bacteria.

Initial three-dimensional neutronics calculations for the EU water cooled lithium-lead test blanket module for ITER-FEAT

International Nuclear Information System (INIS)

Jordanova, J.; Poitevin, Y.; Li Puma, A.; Kirov, N.

2003-01-01

The paper summarizes the main results of the initial three-dimensional radiation transport analysis of the EU water-cooled lithium-lead test blanket module performed using the Monte Carlo code MCNP. Estimates of tritium production rate, nuclear energy deposition and cumulative fluence effects such as radiation damage through atomic displacement and production of He and H are presented. (author)

Quantification of Fog Water Collection in Three Locations of Tenerife (Canary Islands

Directory of Open Access Journals (Sweden)

Axel Ritter

2015-06-01

Full Text Available We present the results of fog water collection obtained with cylindrical fog gauges at three locations on the northern side of Tenerife island (Spain: La Esperanza (1093 m a.s.l., Taborno (1015 m a.s.l., and El Gaitero (1747 m a.s.l.. Concomitant meteorological variables were also measured. We show that fog precipitation was more frequent than rainfall. However, the volumes and frequency of daily fog water collection varied among the three studied sites, usually not exceeding 10–40 L d−1/m2 of collecting surface. In La Esperanza, fog water harvesting occurred frequently, but was considerably lower than in the other two locations. However, while in Taborno fog water collection episodes were distributed throughout the period, in El Gaitero these were mainly concentrated in two periods, during autumn and winter 2012–2013. The study of the relationships between daily fog water yields and the averages of meteorological variables did not show any clear trend, but it suggested that the greater volumes of collected fog water were logically associated with higher wind speeds and lower solar radiation conditions. Fog water collection in La Esperanza and in Taborno typically occurred within a similar temperature interval (7.5–12.5 °C, while in El Gaitero the phenomenon was associated with a lower temperature range (2.5–10 °C.

Two-Phase Microfluidic Systems for High Throughput Quantification of Agglutination Assays

KAUST Repository

Castro, David

2018-01-01

assay, with a minimum detection limit of 50 ng/mL using optical image analysis. We compare optical image analysis and light scattering as quantification methods, and demonstrate the first light scattering quantification of agglutination assays in a two

Método para a determinação de hexazinone e tebutiuron em água Method for determination of hexazinone and tebuthiuron in water

Directory of Open Access Journals (Sweden)

Vera L. Ferracini

2005-06-01

Full Text Available This work presents an alternative method for determination of the herbicides tebuthiuron and hexazinone in ground water. The extraction was made with dichloromethane and the analyses by high performance liquid chromatography (HPLC, using reversed-phase column, C-18, mobile phase methanol/water 50:50, v/v, detection and quantification at 247 nm. The following validation parameters were obtained: limit of detection of method 0.02 and 0.03 µg L-1, limit of quantification of method 0.07 and 0.09 µg L-1; linear range limit of quantification of instrument - 300 µg L-1 (r² > 0.998; recoveries from 90.3 to 108.2% and 90.3 to 101.6%; intermediary precision (%RSD < 8 and < 6%, for hexazinone and tebuthiuron, respectively. The method showed to be efficient and reliable for determination of the herbicides in ground water.

Chemical speciation of heavy metals by surface-enhanced Raman scattering spectroscopy: identification and quantification of inorganic- and methyl-mercury in water

Science.gov (United States)

Guerrini, Luca; Rodriguez-Loureiro, Ignacio; Correa-Duarte, Miguel A.; Lee, Yih Hong; Ling, Xing Yi; García de Abajo, F. Javier; Alvarez-Puebla, Ramon A.

2014-06-01

Chemical speciation of heavy metals has become extremely important in environmental and analytical research because of the strong dependence that toxicity, environmental mobility, persistence and bioavailability of these pollutants have on their specific chemical forms. Novel nano-optical-based detection strategies, capable of overcoming the intrinsic limitations of well-established analytic methods for the quantification of total metal ion content, have been reported, but the speciation of different chemical forms has not yet been achieved. Here, we report the first example of a SERS-based sensor for chemical speciation of toxic metal ions in water at trace levels. Specifically, the inorganic Hg2+ and the more toxicologically relevant methylmercury (CH3Hg+) are selected as analytical targets. The sensing platform consists of a self-assembled monolayer of 4-mercaptopyridine (MPY) on highly SERS-active and robust hybrid plasmonic materials formed by a dense layer of interacting gold nanoparticles anchored onto polystyrene microbeads. The co-ordination of Hg2+ and CH3Hg+ to the nitrogen atom of the MPY ring yields characteristic changes in the vibrational SERS spectra of the organic chemoreceptor that can be qualitatively and quantitatively correlated to the presence of the two different mercury forms.Chemical speciation of heavy metals has become extremely important in environmental and analytical research because of the strong dependence that toxicity, environmental mobility, persistence and bioavailability of these pollutants have on their specific chemical forms. Novel nano-optical-based detection strategies, capable of overcoming the intrinsic limitations of well-established analytic methods for the quantification of total metal ion content, have been reported, but the speciation of different chemical forms has not yet been achieved. Here, we report the first example of a SERS-based sensor for chemical speciation of toxic metal ions in water at trace levels

Uranium determination in water

International Nuclear Information System (INIS)

Prudenzo, E.J.; Puga, Maria J.; Cerchietti, Maria L.R.; Arguelles, Maria G.

2005-01-01

In our laboratory, a procedure has been assessed to determine uranium content of water in normal situations. The method proposed without sample pre-treatment, is simple and rapid. Uranium mass is measured by fluorimetry. For calculation of detection limit (Ld) and quantification level (Lq) we used blank samples and the results were analyzed for different statistical test. The calculation of total propagated uncertainty and sources contribution on real samples are presented. (author)

Uncertainty quantification in flood risk assessment

Science.gov (United States)

Blöschl, Günter; Hall, Julia; Kiss, Andrea; Parajka, Juraj; Perdigão, Rui A. P.; Rogger, Magdalena; Salinas, José Luis; Viglione, Alberto

2017-04-01

Uncertainty is inherent to flood risk assessments because of the complexity of the human-water system, which is characterised by nonlinearities and interdependencies, because of limited knowledge about system properties and because of cognitive biases in human perception and decision-making. On top of the uncertainty associated with the assessment of the existing risk to extreme events, additional uncertainty arises because of temporal changes in the system due to climate change, modifications of the environment, population growth and the associated increase in assets. Novel risk assessment concepts are needed that take into account all these sources of uncertainty. They should be based on the understanding of how flood extremes are generated and how they change over time. They should also account for the dynamics of risk perception of decision makers and population in the floodplains. In this talk we discuss these novel risk assessment concepts through examples from Flood Frequency Hydrology, Socio-Hydrology and Predictions Under Change. We believe that uncertainty quantification in flood risk assessment should lead to a robust approach of integrated flood risk management aiming at enhancing resilience rather than searching for optimal defense strategies.

Automated quantification of surface water inundation in wetlands using optical satellite imagery

Science.gov (United States)

DeVries, Ben; Huang, Chengquan; Lang, Megan W.; Jones, John W.; Huang, Wenli; Creed, Irena F.; Carroll, Mark L.

2017-01-01

We present a fully automated and scalable algorithm for quantifying surface water inundation in wetlands. Requiring no external training data, our algorithm estimates sub-pixel water fraction (SWF) over large areas and long time periods using Landsat data. We tested our SWF algorithm over three wetland sites across North America, including the Prairie Pothole Region, the Delmarva Peninsula and the Everglades, representing a gradient of inundation and vegetation conditions. We estimated SWF at 30-m resolution with accuracies ranging from a normalized root-mean-square-error of 0.11 to 0.19 when compared with various high-resolution ground and airborne datasets. SWF estimates were more sensitive to subtle inundated features compared to previously published surface water datasets, accurately depicting water bodies, large heterogeneously inundated surfaces, narrow water courses and canopy-covered water features. Despite this enhanced sensitivity, several sources of errors affected SWF estimates, including emergent or floating vegetation and forest canopies, shadows from topographic features, urban structures and unmasked clouds. The automated algorithm described in this article allows for the production of high temporal resolution wetland inundation data products to support a broad range of applications.

Interannual observations and quantification of summertime H2O ice deposition on the Martian CO2 ice south polar cap

Science.gov (United States)

Brown, Adrian J.; Piqueux, Sylvain; Titus, Timothy N.

2014-01-01

The spectral signature of water ice was observed on Martian south polar cap in 2004 by the Observatoire pour l'Mineralogie, l'Eau les Glaces et l'Activite (OMEGA) ( Bibring et al., 2004). Three years later, the OMEGA instrument was used to discover water ice deposited during southern summer on the polar cap ( Langevin et al., 2007). However, temporal and spatial variations of these water ice signatures have remained unexplored, and the origins of these water deposits remains an important scientific question. To investigate this question, we have used observations from the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) instrument on the Mars Reconnaissance Orbiter (MRO) spacecraft of the southern cap during austral summer over four Martian years to search for variations in the amount of water ice. We report below that for each year we have observed the cap, the magnitude of the H2O ice signature on the southern cap has risen steadily throughout summer, particularly on the west end of the cap. The spatial extent of deposition is in disagreement with the current best simulations of deposition of water ice on the south polar cap (Montmessin et al., 2007). This increase in water ice signatures is most likely caused by deposition of atmospheric H2O ice and a set of unusual conditions makes the quantification of this transport flux using CRISM close to ideal. We calculate a ‘minimum apparent‘ amount of deposition corresponding to a thin H2O ice layer of 0.2 mm (with 70% porosity). This amount of H2O ice deposition is 0.6–6% of the total Martian atmospheric water budget. We compare our ‘minimum apparent’ quantification with previous estimates. This deposition process may also have implications for the formation and stability of the southern CO2 ice cap, and therefore play a significant role in the climate budget of modern day Mars.

Molecular quantification of environmental DNA using microfluidics and digital PCR.

Science.gov (United States)

Hoshino, Tatsuhiko; Inagaki, Fumio

2012-09-01

Real-time PCR has been widely used to evaluate gene abundance in natural microbial habitats. However, PCR-inhibitory substances often reduce the efficiency of PCR, leading to the underestimation of target gene copy numbers. Digital PCR using microfluidics is a new approach that allows absolute quantification of DNA molecules. In this study, digital PCR was applied to environmental samples, and the effect of PCR inhibitors on DNA quantification was tested. In the control experiment using λ DNA and humic acids, underestimation of λ DNA at 1/4400 of the theoretical value was observed with 6.58 ng μL(-1) humic acids. In contrast, digital PCR provided accurate quantification data with a concentration of humic acids up to 9.34 ng μL(-1). The inhibitory effect of paddy field soil extract on quantification of the archaeal 16S rRNA gene was also tested. By diluting the DNA extract, quantified copy numbers from real-time PCR and digital PCR became similar, indicating that dilution was a useful way to remedy PCR inhibition. The dilution strategy was, however, not applicable to all natural environmental samples. For example, when marine subsurface sediment samples were tested the copy number of archaeal 16S rRNA genes was 1.04×10(3) copies/g-sediment by digital PCR, whereas real-time PCR only resulted in 4.64×10(2) copies/g-sediment, which was most likely due to an inhibitory effect. The data from this study demonstrated that inhibitory substances had little effect on DNA quantification using microfluidics and digital PCR, and showed the great advantages of digital PCR in accurate quantifications of DNA extracted from various microbial habitats. Copyright © 2012 Elsevier GmbH. All rights reserved.

Low cost high performance uncertainty quantification

KAUST Repository

Bekas, C.; Curioni, A.; Fedulova, I.

2009-01-01

Uncertainty quantification in risk analysis has become a key application. In this context, computing the diagonal of inverse covariance matrices is of paramount importance. Standard techniques, that employ matrix factorizations, incur a cubic cost

AVQS: Attack Route-Based Vulnerability Quantification Scheme for Smart Grid

Directory of Open Access Journals (Sweden)

Jongbin Ko

2014-01-01

Full Text Available A smart grid is a large, consolidated electrical grid system that includes heterogeneous networks and systems. Based on the data, a smart grid system has a potential security threat in its network connectivity. To solve this problem, we develop and apply a novel scheme to measure the vulnerability in a smart grid domain. Vulnerability quantification can be the first step in security analysis because it can help prioritize the security problems. However, existing vulnerability quantification schemes are not suitable for smart grid because they do not consider network vulnerabilities. We propose a novel attack route-based vulnerability quantification scheme using a network vulnerability score and an end-to-end security score, depending on the specific smart grid network environment to calculate the vulnerability score for a particular attack route. To evaluate the proposed approach, we derive several attack scenarios from the advanced metering infrastructure domain. The experimental results of the proposed approach and the existing common vulnerability scoring system clearly show that we need to consider network connectivity for more optimized vulnerability quantification.

AVQS: attack route-based vulnerability quantification scheme for smart grid.

Science.gov (United States)

Ko, Jongbin; Lim, Hyunwoo; Lee, Seokjun; Shon, Taeshik

2014-01-01

A smart grid is a large, consolidated electrical grid system that includes heterogeneous networks and systems. Based on the data, a smart grid system has a potential security threat in its network connectivity. To solve this problem, we develop and apply a novel scheme to measure the vulnerability in a smart grid domain. Vulnerability quantification can be the first step in security analysis because it can help prioritize the security problems. However, existing vulnerability quantification schemes are not suitable for smart grid because they do not consider network vulnerabilities. We propose a novel attack route-based vulnerability quantification scheme using a network vulnerability score and an end-to-end security score, depending on the specific smart grid network environment to calculate the vulnerability score for a particular attack route. To evaluate the proposed approach, we derive several attack scenarios from the advanced metering infrastructure domain. The experimental results of the proposed approach and the existing common vulnerability scoring system clearly show that we need to consider network connectivity for more optimized vulnerability quantification.

A Method for Quantification of Epithelium Colonization Capacity by Pathogenic Bacteria

DEFF Research Database (Denmark)

Micha Pedersen, Rune; Grønnemose, Rasmus Birkholm; Stærk, Kristian

2018-01-01

a method in which epithelia/endothelia are simulated by flow chamber-grown human cell layers, and infection is induced by seeding of pathogenic bacteria on these surfaces under conditions that simulate the physiological microenvironment. Quantification of bacterial adhesion and colonization of the cell......Most bacterial infections initiate at the mucosal epithelium lining the gastrointestinal, respiratory, and urogenital tracts. At these sites, bacterial pathogens must adhere and increase in numbers to effectively breach the outer barrier and invade the host. If the bacterium succeeds in reaching...... the bloodstream, effective dissemination again requires that bacteria in the blood, reestablish contact to distant endothelium sites and form secondary site foci. The infectious potential of bacteria is therefore closely linked to their ability to adhere to, colonize, and invade epithelial and endothelial...

The T-TEL Method for Assessing Water, Sediment, and Chemical Connectivity

Science.gov (United States)

Ali, Genevieve; Oswald, Claire; Spence, Christopher; Wellen, Christopher

2018-02-01

The concept of connectivity has been the subject of a great deal of recent research and provided new insights and breakthroughs on runoff generation processes and watershed biogeochemistry. However, a consensus definition and cohesive mathematical framework that would permit the consistent quantification of hydrologic connectivity, the examination of the interrelationships between water and material (e.g., sediment and chemicals) connectivity, or rigorous study intercomparison, have not been presented by the water resource community. Building on previous conceptualizations and site-specific or process-specific metrics, this paper aimed to review the current state of science on hydrologic connectivity and its role in water-mediated connectivity of material such as solutes and sediment before introducing a conceptual and a mathematical connectivity assessment framework. These frameworks rely on the quantification of Time scales, Thresholds, Excesses and Losses related to water and water-mediated material transport dynamics and are referred to as the T-TEL method. Through a small case study, we show how the T-TEL method allows a wide range of properties to be quantified, namely the occurrence, frequency, duration, magnitude, and spatial extent of water and water-mediated material connectivity. We also propose a research agenda to refine the T-TEL method and ensure its usefulness for facilitating the research and management of connectivity in pristine and human-impacted landscapes.

Resonance self-shielding effect in uncertainty quantification of fission reactor neutronics parameters

International Nuclear Information System (INIS)

Chiba, Go; Tsuji, Masashi; Narabayashi, Tadashi

2014-01-01

In order to properly quantify fission reactor neutronics parameter uncertainties, we have to use covariance data and sensitivity profiles consistently. In the present paper, we establish two consistent methodologies for uncertainty quantification: a self-shielded cross section-based consistent methodology and an infinitely-diluted cross section-based consistent methodology. With these methodologies and the covariance data of uranium-238 nuclear data given in JENDL-3.3, we quantify uncertainties of infinite neutron multiplication factors of light water reactor and fast reactor fuel cells. While an inconsistent methodology gives results which depend on the energy group structure of neutron flux and neutron-nuclide reaction cross section representation, both the consistent methodologies give fair results with no such dependences.

Rapid Quantification and Validation of Lipid Concentrations within Liposomes

Directory of Open Access Journals (Sweden)

Carla B. Roces

2016-09-01

Full Text Available Quantification of the lipid content in liposomal adjuvants for subunit vaccine formulation is of extreme importance, since this concentration impacts both efficacy and stability. In this paper, we outline a high performance liquid chromatography-evaporative light scattering detector (HPLC-ELSD method that allows for the rapid and simultaneous quantification of lipid concentrations within liposomal systems prepared by three liposomal manufacturing techniques (lipid film hydration, high shear mixing, and microfluidics. The ELSD system was used to quantify four lipids: 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC, cholesterol, dimethyldioctadecylammonium (DDA bromide, and ᴅ-(+-trehalose 6,6′-dibehenate (TDB. The developed method offers rapidity, high sensitivity, direct linearity, and a good consistency on the responses (R2 > 0.993 for the four lipids tested. The corresponding limit of detection (LOD and limit of quantification (LOQ were 0.11 and 0.36 mg/mL (DMPC, 0.02 and 0.80 mg/mL (cholesterol, 0.06 and 0.20 mg/mL (DDA, and 0.05 and 0.16 mg/mL (TDB, respectively. HPLC-ELSD was shown to be a rapid and effective method for the quantification of lipids within liposome formulations without the need for lipid extraction processes.

Analysis of Ventilation Regimes of the Oblique Wedge-Shaped Surface Piercing Hydrofoil During Initial Water Entry Process

Directory of Open Access Journals (Sweden)

Ghadimi Parviz

2018-03-01

Full Text Available The suction side of a surface piercing hydrofoil, as a section of a Surface Piercing Propeller (SPP, is usually exposed to three phases of flow consisting air, water, and vapour. Hence, ventilation and cavitation pattern of such section during the initial phase of water entry plays an essential role for the propeller’s operational curves. Accordingly, in the current paper a numerical simulation of a simple surface piercing hydrofoil in the form of an oblique wedge is conducted in three-phase environment by using the coupled URANS and VOF equations. The obtained results are validated against water entry experiments and super-cavitation tunnel test data. The resulting pressure curves and free surface profiles of the wedge water entry are presented for different velocity ratios ranging from 0.12 to 0.64. Non-dimensional forces and efficiency relations are defined in order to present the wedge water entry characteristics. Congruent patterns are observed between the performance curves of the propeller and the wedge in different fully ventilated or partially cavitated operation modes. The transition trend from fully ventilated to partially cavitated operation of the surface piercing section of a SPP is studied and analyzed through wedge’s performance during the transitional period.

Superlattice band structure: New and simple energy quantification condition

Energy Technology Data Exchange (ETDEWEB)

Maiz, F., E-mail: fethimaiz@gmail.com [University of Cartage, Nabeul Engineering Preparatory Institute, Merazka, 8000 Nabeul (Tunisia); King Khalid University, Faculty of Science, Physics Department, P.O. Box 9004, Abha 61413 (Saudi Arabia)

2014-10-01

Assuming an approximated effective mass and using Bastard's boundary conditions, a simple method is used to calculate the subband structure for periodic semiconducting heterostructures. Our method consists to derive and solve the energy quantification condition (EQC), this is a simple real equation, composed of trigonometric and hyperbolic functions, and does not need any programming effort or sophistic machine to solve it. For less than ten wells heterostructures, we have derived and simplified the energy quantification conditions. The subband is build point by point; each point presents an energy level. Our simple energy quantification condition is used to calculate the subband structure of the GaAs/Ga{sub 0.5}Al{sub 0.5}As heterostructures, and build its subband point by point for 4 and 20 wells. Our finding shows a good agreement with previously published results.

The effect of chloride on general corrosion and crack initiation of low-alloy steels in oxygenated high-temperature water

International Nuclear Information System (INIS)

Herbst, Matthias; Roth, Armin; Widera, Martin; Kuester, Karin; Huettner, Frank; Nowak, Erika

2012-01-01

The effect of chloride on the general corrosion and its potential impact on EAC crack initiation of low-alloy steel (German reactor pressure vessel steel 22 NiMoCr 3 7) in oxygenated high-temperature water were investigated. The general corrosion behavior was analyzed by exposure tests with either permanently increased chloride concentration levels or temporary chloride transients. The potential effect on EAC crack initiation was analyzed with pre-strained C-ring specimens and in SSRT (CERT) tests with slowly rising strain. Both kinds of tests were performed under simulated BWR conditions and with different chloride levels. The chloride concentrations of 5 to 50 ppb were chosen according to the action levels of the German water chemistry guideline for the reactor coolant of BWRs (VGB R401J, 2006). In all exposure tests, none of the pre-strained C-ring specimens showed crack initiation during up to 1000 hours of exposure time with up to 50 ppb chloride. Investigations of the oxide layer thickness after immersion testing revealed a decrease with increasing chloride concentration. As shown by post-test chemical analysis of the oxide layer composition by TOF-SIMS, this effect is most likely primarily due to adsorption of chloride on the oxide layer surface, since only very limited penetration of chloride into the oxide was detected. In contrast to the tests with C-ring specimens, where no crack initiation occurred, slightly accelerated crack initiation at lower elongation levels was observed at increasing chloride concentrations in SSRT tests under simulated BWR conditions using actively loaded specimens. In addition, SSRT specimens that were cyclically loaded at the oxide fracture elongation level were used to generate a continuous, exposure of bare metal to the environment by repeated fracture of the oxide. This loading pattern did not cause crack initiation at all chloride concentrations applied (up to 50 ppb). From these results, it may be concluded that at least

Quantification bias caused by plasmid DNA conformation in quantitative real-time PCR assay.

Science.gov (United States)

Lin, Chih-Hui; Chen, Yu-Chieh; Pan, Tzu-Ming

2011-01-01

Quantitative real-time PCR (qPCR) is the gold standard for the quantification of specific nucleic acid sequences. However, a serious concern has been revealed in a recent report: supercoiled plasmid standards cause significant over-estimation in qPCR quantification. In this study, we investigated the effect of plasmid DNA conformation on the quantification of DNA and the efficiency of qPCR. Our results suggest that plasmid DNA conformation has significant impact on the accuracy of absolute quantification by qPCR. DNA standard curves shifted significantly among plasmid standards with different DNA conformations. Moreover, the choice of DNA measurement method and plasmid DNA conformation may also contribute to the measurement error of DNA standard curves. Due to the multiple effects of plasmid DNA conformation on the accuracy of qPCR, efforts should be made to assure the highest consistency of plasmid standards for qPCR. Thus, we suggest that the conformation, preparation, quantification, purification, handling, and storage of standard plasmid DNA should be described and defined in the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) to assure the reproducibility and accuracy of qPCR absolute quantification.

Intracellular Water Exchange for Measuring the Dry Mass, Water Mass and Changes in Chemical Composition of Living Cells

Science.gov (United States)

Hecht, Vivian C.; Son, Sungmin; Li, Yingzhong; Knudsen, Scott M.; Olcum, Selim; Higgins, John M.; Chen, Jianzhu; Grover, William H.; Manalis, Scott R.

2013-01-01

We present a method for direct non-optical quantification of dry mass, dry density and water mass of single living cells in suspension. Dry mass and dry density are obtained simultaneously by measuring a cell’s buoyant mass sequentially in an H2O-based fluid and a D2O-based fluid. Rapid exchange of intracellular H2O for D2O renders the cell’s water content neutrally buoyant in both measurements, and thus the paired measurements yield the mass and density of the cell’s dry material alone. Utilizing this same property of rapid water exchange, we also demonstrate the quantification of intracellular water mass. In a population of E. coli, we paired these measurements to estimate the percent dry weight by mass and volume. We then focused on cellular dry density – the average density of all cellular biomolecules, weighted by their relative abundances. Given that densities vary across biomolecule types (RNA, DNA, protein), we investigated whether we could detect changes in biomolecular composition in bacteria, fungi, and mammalian cells. In E. coli, and S. cerevisiae, dry density increases from stationary to exponential phase, consistent with previously known increases in the RNA/protein ratio from up-regulated ribosome production. For mammalian cells, changes in growth conditions cause substantial shifts in dry density, suggesting concurrent changes in the protein, nucleic acid and lipid content of the cell. PMID:23844039

Quantification methodology for the French 900 MW PWR PRA

International Nuclear Information System (INIS)

Ducamp, F.; Lanore, J.M.; Duchemin, B.; De Villeneuve, M.J.

1985-02-01

This paper develops some improvements brought to provide to the classical way of risk assessment. The calculation of the contribution to the risk of one peculiar sequence of an event tree is composed of four stages: creation of a fault tree for each system which appears in the event trees, in terms of component faults; simplification of these fault trees into smaller ones, in terms of macrocomponents; creation of one ''super-tree'' by regrouping the fault trees of down systems (systems which fail in the sequence) under an AND gate and calculation of minimal cut sets of this super-tree, taking into account the up systems (systems that do not fail in the sequence) and peculiarities related to the initiating event if needed; quantification of the minimal cut sets so obtained, taking into account the duration of the scenario depicted by the sequence and the possibilities of repair. Each of these steps is developed in this article

Sulfur and nitrogen co-doped carbon dots sensors for nitric oxide fluorescence quantification

Energy Technology Data Exchange (ETDEWEB)

Simões, Eliana F.C. [Centro de Investigação em Química da Universidade do Porto (CIQ-UP), Faculdade de Farmácia da Universidade de Coimbra, Pólo das Ciências da Saúde, 3000-548 Coimbra (Portugal); Centro de Investigação em Química da Universidade do Porto (CIQ-UP), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências da Universidade do Porto, R. Campo Alegre 687, 4169-007 Porto (Portugal); Leitão, João M.M., E-mail: jleitao@ff.uc.pt [Centro de Investigação em Química da Universidade do Porto (CIQ-UP), Faculdade de Farmácia da Universidade de Coimbra, Pólo das Ciências da Saúde, 3000-548 Coimbra (Portugal); Esteves da Silva, Joaquim C.G. [Centro de Investigação em Química da Universidade do Porto (CIQ-UP), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências da Universidade do Porto, R. Campo Alegre 687, 4169-007 Porto (Portugal)

2017-04-01

Microwave synthetized sulfur and nitrogen co-doped carbon dots responded selectively to nitric oxide (NO) at pH 7. Citric acid, urea and sodium thiosulfate in the proportion of 1:1:3 were used respectively as carbon, nitrogen and sulfur sources in the carbon dots microwave synthesis. For this synthesis, the three compounds were diluted in 15 mL of water and exposed for 5 min to a microwave radiation of 700 W. It is observed that the main factor contributing to the increased sensitivity and selectivity response to NO at pH 7 is the sodium thiosulfate used as sulfur source. A linear response range from 1 to 25 μM with a sensitivity of 16 μM{sup −1} and a detection limit of 0.3 μM were obtained. The NO quantification capability was assessed in standard and in fortified serum solutions. - Highlights: • S,N co-doped CDs were microwave synthetized from citric acid, urea and sodium thiosulfate. • The NO fluorescence sensing was evaluated at pH 7. • The selective and sensitive detection of NO at pH 7 was achieved. • Good NO quantification results in serum samples were obtained.

Sulfur and nitrogen co-doped carbon dots sensors for nitric oxide fluorescence quantification

International Nuclear Information System (INIS)

Simões, Eliana F.C.; Leitão, João M.M.; Esteves da Silva, Joaquim C.G.

2017-01-01

Microwave synthetized sulfur and nitrogen co-doped carbon dots responded selectively to nitric oxide (NO) at pH 7. Citric acid, urea and sodium thiosulfate in the proportion of 1:1:3 were used respectively as carbon, nitrogen and sulfur sources in the carbon dots microwave synthesis. For this synthesis, the three compounds were diluted in 15 mL of water and exposed for 5 min to a microwave radiation of 700 W. It is observed that the main factor contributing to the increased sensitivity and selectivity response to NO at pH 7 is the sodium thiosulfate used as sulfur source. A linear response range from 1 to 25 μM with a sensitivity of 16 μM"−"1 and a detection limit of 0.3 μM were obtained. The NO quantification capability was assessed in standard and in fortified serum solutions. - Highlights: • S,N co-doped CDs were microwave synthetized from citric acid, urea and sodium thiosulfate. • The NO fluorescence sensing was evaluated at pH 7. • The selective and sensitive detection of NO at pH 7 was achieved. • Good NO quantification results in serum samples were obtained.

Fast, rugged and sensitive ultra high pressure liquid chromatography tandem mass spectrometry method for analysis of cyanotoxins in raw water and drinking water--First findings of anatoxins, cylindrospermopsins and microcystin variants in Swedish source waters and infiltration ponds.

Science.gov (United States)

Pekar, Heidi; Westerberg, Erik; Bruno, Oscar; Lääne, Ants; Persson, Kenneth M; Sundström, L Fredrik; Thim, Anna-Maria

2016-01-15

Freshwater blooms of cyanobacteria (blue-green algae) in source waters are generally composed of several different strains with the capability to produce a variety of toxins. The major exposure routes for humans are direct contact with recreational waters and ingestion of drinking water not efficiently treated. The ultra high pressure liquid chromatography tandem mass spectrometry based analytical method presented here allows simultaneous analysis of 22 cyanotoxins from different toxin groups, including anatoxins, cylindrospermopsins, nodularin and microcystins in raw water and drinking water. The use of reference standards enables correct identification of toxins as well as precision of the quantification and due to matrix effects, recovery correction is required. The multi-toxin group method presented here, does not compromise sensitivity, despite the large number of analytes. The limit of quantification was set to 0.1 μg/L for 75% of the cyanotoxins in drinking water and 0.5 μg/L for all cyanotoxins in raw water, which is compliant with the WHO guidance value for microcystin-LR. The matrix effects experienced during analysis were reasonable for most analytes, considering the large volume injected into the mass spectrometer. The time of analysis, including lysing of cell bound toxins, is less than three hours. Furthermore, the method was tested in Swedish source waters and infiltration ponds resulting in evidence of presence of anatoxin, homo-anatoxin, cylindrospermopsin and several variants of microcystins for the first time in Sweden, proving its usefulness. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Quantification of proportions of different water sources in a mining operation.

Science.gov (United States)

Scheiber, Laura; Ayora, Carlos; Vázquez-Suñé, Enric

2018-04-01

The water drained in mining operations (galleries, shafts, open pits) usually comes from different sources. Evaluating the contribution of these sources is very often necessary for water management. To determine mixing ratios, a conventional mass balance is often used. However, the presence of more than two sources creates uncertainties in mass balance applications. Moreover, the composition of the end-members is not commonly known with certainty and/or can vary in space and time. In this paper, we propose a powerful tool for solving such problems and managing groundwater in mining sites based on multivariate statistical analysis. This approach was applied to the Cobre Las Cruces mining complex, the largest copper mine in Europe. There, the open pit water is a mixture of three end-members: runoff (RO), basal Miocene (Mb) and Paleozoic (PZ) groundwater. The volume of water drained from the Miocene base aquifer must be determined and compensated via artificial recharging to comply with current regulations. Through multivariate statistical analysis of samples from a regional field campaign, the compositions of PZ and Mb end-members were firstly estimated, and then used for mixing calculations at the open pit scale. The runoff end-member was directly determined from samples collected in interception trenches inside the open pit. The application of multivariate statistical methods allowed the estimation of mixing ratios for the hydrological years 2014-2015 and 2015-2016. Open pit water proportions have changed from 15% to 7%, 41% to 36%, and 44% to 57% for runoff, Mb and PZ end-members, respectively. An independent estimation of runoff based on the curve method yielded comparable results. Copyright © 2017 Elsevier B.V. All rights reserved.

Development and UFLC-MS/MS Characterization of a Product-Specific Standard for Phenolic Quantification of Maple-Derived Foods.

Science.gov (United States)

Liu, Yongqiang; Ma, Hang; Seeram, Navindra P

2016-05-04

The phenolic contents of plant foods are commonly quantified by the Folin-Ciocalteu assay based on gallic acid equivalents (GAEs). However, this may lead to inaccuracies because gallic acid is not always representative of the structural heterogeneity of plant phenolics. Therefore, product-specific standards have been developed for the phenolic quantification of several foods. Currently, maple-derived foods (syrup, sugar, sap/water, and extracts) are quantified for phenolic contents based on GAEs. Because lignans are the predominant phenolics present in maple, herein, a maple phenolic lignan-enriched standard (MaPLES) was purified (by chromatography) and characterized (by UFLC-MS/MS with lignans previously isolated from maple syrup). Using MaPLES and secoisolariciresinol (a commercially available lignan), the phenolic contents of the maple-derived foods increased 3-fold compared to GAEs. Therefore, lignan-based standards are more appropriate for phenolic quantification of maple-derived foods versus GAEs. Also, MaPLES can be utilized for the authentication and detection of fake label claims on maple products.

PEM Water Electrolysis: Preliminary Investigations Using Neutron Radiography

Science.gov (United States)

de Beer, Frikkie; van der Merwe, Jan-Hendrik; Bessarabov, Dmitri

The quasi-dynamic water distribution and performance of a proton exchange membrane (PEM) electrolyzer at both a small fuel cell's anode and cathode was observed and quantitatively measured in the in-plane imaging geometry direction(neutron beam parallel to membrane and with channels parallel to the beam) by applying the neutron radiography principle at the neutron imaging facility (NIF) of NIST, Gaithersburg, USA. The test section had 6 parallel channels with an active area of 5 cm2 and in-situ neutron radiography observation entails the liquid water content along the total length of each of the channels. The acquisition was made with a neutron cMOS-camera system with performance of 10 sec per frame to achieve a relatively good pixel dynamic range and at a pixel resolution of 10 x 10 μm2. A relatively high S/N ratio was achieved in the radiographs to observe in quasi real time the water management as well as quantification of water / gas within the channels. The water management has been observed at increased steps (0.2A/cm2) of current densities until 2V potential has been achieved. These observations were made at 2 different water flow rates, at 3 temperatures for each flow rate and repeated for both the vertical and horizontal electrolyzer orientation geometries. It is observed that there is water crossover from the anode through the membrane to the cathode. A first order quantification (neutron scattering correction not included) shows that the physical vertical and horizontal orientation of the fuel cell as well as the temperature of the system up to 80 °C has no significant influence on the percentage water (∼18%) that crossed over into the cathode. Additionally, a higher water content was observed in the Gas Diffusion Layer at the position of the channels with respect to the lands.

Molecular fouling resistance of zwitterionic and amphiphilic initiated chemically vapor-deposited (iCVD) thin films

Energy Technology Data Exchange (ETDEWEB)

Yang, R; Goktekin, E; Wang, MH; Gleason, KK

2014-08-08

Biofouling is a universal problem in various applications ranging from water purification to implantable biomedical devices. Recent advances in surface modification have created a rich library of antifouling surface chemistries, many of which can be categorized into one of the two groups: hydrophilic surfaces or amphiphilic surfaces. We report the straightforward preparation of antifouling thin film coatings in both categories via initiated chemical vapor deposition. A molecular force spectroscopy-based method is demonstrated as a rapid and quantitative assessment tool for comparing the differences in antifouling characteristics. The fouling propensity of single molecules, as opposed to bulk protein solution or bacterial culture, is assessed. This method allows for the interrogation of molecular interaction without the complication resulted from protein conformational change or micro-organism group interactions. The molecular interaction follows the same trend as bacterial adhesion results obtained previously, demonstrating that molecular force probe is a valid method for the quantification and mechanistic examination of fouling. In addition, the molecular force spectroscopy-based method is able to distinguish differences in antifouling capability that is not resolvable by traditional static protein adsorption tests. To lend further insight into the intrinsic fouling resistance of zwitterionic and amphiphilic surface chemistries, Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, advancing and receding water contact angles, and atomic force microscopy are used to elucidate the film properties that are relevant to their antifouling capabilities.

Monitoring of chloropesticide methoxychlor preconcentration from waste water using hplc - solid phase extraction (abstract)

International Nuclear Information System (INIS)

Butt, S.B.; Saqlin, M.; Riaz, M.

2011-01-01

The method involves preconcentration of methoxychlor by solid phase extraction (SPE) with 1 mL silica based C-18 and 3 mL polymer based C-18 cartridge and then quantification by high performance liquid chromatography with UV detector (HPLC-UV). Optimization of HPLC parameters was done by determining max of methoxychlor on a double beam UV/Visible spectrophotometer, flow rate of mobile phase on reversed phase columns. Lowest detection limit for methoxychlor dissolved in water and methanol was 0.2ppm and 0.1ppm respectively. For solid phase extraction recovery studies and effect of different parameters such as initial concentration of analyte 0.01 to 0.05 ppm, loading rate 1 and 2mL/min, nature of desorbing solvent (methanol, ethyl acetate and acetonitrile) were investigated. Periodic self degradation of methoxychlor, and reusing potential of both SPE materials was also explored. Lower initial concentrations and slower loading rate of methoxychlor solutions gave improved recoveries. Recoveries were in the range of 80 to 90% for new SPE cartridge and reduced to 35 to 57% for once used silica based C-18 tubes. It was around 73 % for HLB C18 on their second use, and decreased on their repeated reuse. Lastly recoveries for stimulant and real waste water samples were determined to be 77 and 60% respectively. (author)

Error quantification of abnormal extreme high waves in Operational Oceanographic System in Korea

Science.gov (United States)

Jeong, Sang-Hun; Kim, Jinah; Heo, Ki-Young; Park, Kwang-Soon

2017-04-01

In winter season, large-height swell-like waves have occurred on the East coast of Korea, causing property damages and loss of human life. It is known that those waves are generated by a local strong wind made by temperate cyclone moving to eastward in the East Sea of Korean peninsula. Because the waves are often occurred in the clear weather, in particular, the damages are to be maximized. Therefore, it is necessary to predict and forecast large-height swell-like waves to prevent and correspond to the coastal damages. In Korea, an operational oceanographic system (KOOS) has been developed by the Korea institute of ocean science and technology (KIOST) and KOOS provides daily basis 72-hours' ocean forecasts such as wind, water elevation, sea currents, water temperature, salinity, and waves which are computed from not only meteorological and hydrodynamic model (WRF, ROMS, MOM, and MOHID) but also wave models (WW-III and SWAN). In order to evaluate the model performance and guarantee a certain level of accuracy of ocean forecasts, a Skill Assessment (SA) system was established as a one of module in KOOS. It has been performed through comparison of model results with in-situ observation data and model errors have been quantified with skill scores. Statistics which are used in skill assessment are including a measure of both errors and correlations such as root-mean-square-error (RMSE), root-mean-square-error percentage (RMSE%), mean bias (MB), correlation coefficient (R), scatter index (SI), circular correlation (CC) and central frequency (CF) that is a frequency with which errors lie within acceptable error criteria. It should be utilized simultaneously not only to quantify an error but also to improve an accuracy of forecasts by providing a feedback interactively. However, in an abnormal phenomena such as high-height swell-like waves in the East coast of Korea, it requires more advanced and optimized error quantification method that allows to predict the abnormal

Internal event analysis for Laguna Verde Unit 1 Nuclear Power Plant. Accident sequence quantification and results

International Nuclear Information System (INIS)

Huerta B, A.; Aguilar T, O.; Nunez C, A.; Lopez M, R.

1994-01-01

The Level 1 results of Laguna Verde Nuclear Power Plant PRA are presented in the I nternal Event Analysis for Laguna Verde Unit 1 Nuclear Power Plant, CNSNS-TR 004, in five volumes. The reports are organized as follows: CNSNS-TR 004 Volume 1: Introduction and Methodology. CNSNS-TR4 Volume 2: Initiating Event and Accident Sequences. CNSNS-TR 004 Volume 3: System Analysis. CNSNS-TR 004 Volume 4: Accident Sequence Quantification and Results. CNSNS-TR 005 Volume 5: Appendices A, B and C. This volume presents the development of the dependent failure analysis, the treatment of the support system dependencies, the identification of the shared-components dependencies, and the treatment of the common cause failure. It is also presented the identification of the main human actions considered along with the possible recovery actions included. The development of the data base and the assumptions and limitations in the data base are also described in this volume. The accident sequences quantification process and the resolution of the core vulnerable sequences are presented. In this volume, the source and treatment of uncertainties associated with failure rates, component unavailabilities, initiating event frequencies, and human error probabilities are also presented. Finally, the main results and conclusions for the Internal Event Analysis for Laguna Verde Nuclear Power Plant are presented. The total core damage frequency calculated is 9.03x 10-5 per year for internal events. The most dominant accident sequences found are the transients involving the loss of offsite power, the station blackout accidents, and the anticipated transients without SCRAM (ATWS). (Author)

Pilot scale test of a produced water-treatment system for initial removal of organic compounds

Energy Technology Data Exchange (ETDEWEB)

Sullivan, Enid J [Los Alamos National Laboratory; Kwon, Soondong [UT-AUSTIN; Katz, Lynn [UT-AUSTIN; Kinney, Kerry [UT-AUSTIN

2008-01-01

A pilot-scale test to remove polar and non-polar organics from produced water was performed at a disposal facility in Farmington NM. We used surfactant-modified zeolite (SMZ) adsorbent beds and a membrane bioreactor (MBR) in combination to reduce the organic carbon content of produced water prior to reverse osmosis (RO). Reduction of total influent organic carbon (TOC) to 5 mg/L or less is desirable for efficient RO system operation. Most water disposed at the facility is from coal-bed gas production, with oil production waters intermixed. Up to 20 gal/d of produced water was cycled through two SMZ adsorbent units to remove volatile organic compounds (BTEX, acetone) and semivolatile organic compounds (e.g., napthalene). Output water from the SMZ units was sent to the MBR for removal of the organic acid component of TOC. Removal of inorganic (Mn and Fe oxide) particulates by the SMZ system was observed. The SMZ columns removed up to 40% of the influent TOC (600 mg/L). BTEX concentrations were reduced from the initial input of 70 mg/L to 5 mg/L by the SMZ and to an average of 2 mg/L after the MBR. Removal rates of acetate (input 120-170 mg/L) and TOC (input up to 45 mg/L) were up to 100% and 92%, respectively. The water pH rose from 8.5 to 8.8 following organic acid removal in the MBR; this relatively high pH was likely responsible for observed scaling of the MBR internal membrane. Additional laboratory studies showed the scaling can be reduced by metered addition of acid to reduce the pH. Significantly, organic removal in the MBR was accomplished with a very low biomass concentration of 1 g/L throughout the field trial. An earlier engineering evaluation shows produced water treatment by the SMZ/MBR/RO system would cost from $0.13 to $0.20 per bbl at up to 40 gpm. Current estimated disposal costs for produced water are $1.75 to $4.91 per bbl when transportation costs are included, with even higher rates in some regions. Our results suggest that treatment by an SMZ

New method to determine initial surface water displacement at tsunami source

Science.gov (United States)

Lavrentyev, Mikhail; Romanenko, Alexey; Tatarintsev, Pavel

2013-04-01

earthquake. However, today it is not yet possible. Ground-based sea radars. This is an effective tool for direct measurement of tsunami wave. At the same time, the wave is measured at a rather narrow area in front of the radar and does not include information about neighboring parts of the wave. Direct measurement of tsunami wave at deep water [2]. Today, this technology is certainly among the most useful and promising. The DART II® system consists of a seafloor bottom pressure recording (BPR) system, capable of detecting tsunamis as small as 1 cm, and a moored surface buoy for real-time communications. We focus our research on improving the later method, direct measurement of tsunami wave at deep water. We suggest the new way to analyze DART data, modifying the methodology originally proposed by V. Titov. Smaller system of unit sources [3] should be considered to approximate all typical shapes of initial disturbance by several suitable basis functions. To successfully implement it, performance of data analysis should be dramatically improved. This could be done by using a signal orthogonalization procedure for considered system of unit sources and calculation of Fourier coefficients of the measured time series with respect to orthogonal basis. The approach suggested was used as a part of computerized workstation for tsunami hazard monitoring [5-6]. National Oceanic and Atmospheric Administration Center for Tsunami Research. URL: http://nctr.pmel.noaa.gov/honshu20110311/ National Data Buoy Center. URL: http://www.ndbc.noaa.gov/dart.shtml National Oceanic and Atmospheric Administration Center for Tsunami Research. URL: http://sift.pmel.noaa.gov/thredds/dodsC/uncompressed/ National Oceanic and Atmospheric Administration Center for Tsunami Research. URL: http://nctr.pmel.noaa.gov/model.html Alexey Romanenko, Mikhail Lavrentiev-jr, Vasily Titov, "Modern Architecture for Tsunami Hazard Mitigation" // Asia Oceania Geosciences Society (AOGS-2012), ISBN 978-981-07-2049-0 Mikhail

[Quantification of parasites in aquatic environments in the Province of Salta, Argentina].

Science.gov (United States)

Cacciabue, Dolores Gutiérrez; Juárez, María M; Poma, Hugo R; Garcé, Beatriz; Rajal, Verónica B

2014-01-01

Microbiological pollution of recreational waters is a major problem for public health as it may transmit waterborne diseases. To assess water quality, current legislation only requires limits for bacterial indicators; however, these organisms do not accurately predict the presence of parasites. Small number of parasites is usually present in water and although they are capable of causing disease, they may not be high enough to be detected. Detection therefore requires water samples to be concentrated. In this work three recreational aquatic environments located in the province of Salta were monitored over one year. For parasite quantification, water samples were collected every three months and concentrated by ultrafiltration. Detection was performed by microscopy. In addition, monthly monitoring was carried out in each aquatic environment: physicochemical variables were measured in situ and bacteriological counts were determined by traditional microbiological techniques. Of 14 parasites identified, at least nine were detected in each aquatic environment sampled. While bacteriological contamination decreased in most cases during winter (76-99%), parasites were present year-round, becoming a continual threat to public health. Thus, we here propose that it is necessary to use specific parasitological indicators to prevent waterborne disease transmission. Our results suggest that Entamoeba would be a suitable indicator as it was found in all environments and showed minimal seasonal variation. The results obtained in this study have epidemiological relevance and will allow decision-makers to propose solutions for water protection in order to care for population health. Copyright © 2014 Asociación Colombiana de Psiquiatría. Publicado por Elsevier España. All rights reserved.

Water microbiology. Bacterial pathogens and water.

Science.gov (United States)

Cabral, João P S

2010-10-01

Water is essential to life, but many people do not have access to clean and safe drinking water and many die of waterborne bacterial infections. In this review a general characterization of the most important bacterial diseases transmitted through water-cholera, typhoid fever and bacillary dysentery-is presented, focusing on the biology and ecology of the causal agents and on the diseases' characteristics and their life cycles in the environment. The importance of pathogenic Escherichia coli strains and emerging pathogens in drinking water-transmitted diseases is also briefly discussed. Microbiological water analysis is mainly based on the concept of fecal indicator bacteria. The main bacteria present in human and animal feces (focusing on their behavior in their hosts and in the environment) and the most important fecal indicator bacteria are presented and discussed (focusing on the advantages and limitations of their use as markers). Important sources of bacterial fecal pollution of environmental waters are also briefly indicated. In the last topic it is discussed which indicators of fecal pollution should be used in current drinking water microbiological analysis. It was concluded that safe drinking water for all is one of the major challenges of the 21st century and that microbiological control of drinking water should be the norm everywhere. Routine basic microbiological analysis of drinking water should be carried out by assaying the presence of Escherichia coli by culture methods. Whenever financial resources are available, fecal coliform determinations should be complemented with the quantification of enterococci. More studies are needed in order to check if ammonia is reliable for a preliminary screening for emergency fecal pollution outbreaks. Financial resources should be devoted to a better understanding of the ecology and behavior of human and animal fecal bacteria in environmental waters.

Quantification of the impacts of coalmine water irrigation on the underlying aquifers

Energy Technology Data Exchange (ETDEWEB)

Vermeulen, D.; Usher, B.; van Tonder, G. [University of Free State, Bloemfontein (South Africa). Institute of Groundwater Studies

2009-07-15

It is predicted that vast volumes of affected mine water will be produced by mining activities in the Mpumalanga coalfields of South Africa, The potential environmental impact of this excess water is of great concern in a water-scarce country like South Africa. Research over a period of more than 10 years has shown that this water can be used successfully for the irrigation of a range of crops. There is, however, continuing concern from the local regulators regarding the long-term impact that large-scale mine water irrigation may have on groundwater quality and quantity. Detailed research has been undertaken over the last three years to supplement the groundwater monitoring programme at five different pilot sites, on both virgin soils (greenfields) and in coalmining spoils. These sites range from sandy soils to very clayey soils. The research has included soil moisture measurements, collection of in situ soil moisture over time, long-term laboratory studies of the leaching and attenuation properties of different soils and the impact of irrigation on acid rock drainage processes, and in depth determination of the hydraulic properties of the subsurface at each of these sites, including falling head tests, pumping tests and point dilution tests. This has been supported by geochemical modelling of these processes to quantify the impacts. The results indicate that many of the soils have considerable attenuation capacities and that in the period of irrigation, a large proportion of the salts have been contained in the upper portions of the unsaturated zones below each irrigation pivot. The volumes and quality of water leaching through to the aquifers have been quantified at each site. From this mixing ratios have been calculated in order to determine the effect of the irrigation water on the underlying aquifers.

freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis.

Science.gov (United States)

Deng, Ning; Li, Zhenye; Pan, Chao; Duan, Huilong

2015-01-01

Study of complex proteome brings forward higher request for the quantification method using mass spectrometry technology. In this paper, we present a mass spectrometry label-free quantification tool for complex proteomes, called freeQuant, which integrated quantification with functional analysis effectively. freeQuant consists of two well-integrated modules: label-free quantification and functional analysis with biomedical knowledge. freeQuant supports label-free quantitative analysis which makes full use of tandem mass spectrometry (MS/MS) spectral count, protein sequence length, shared peptides, and ion intensity. It adopts spectral count for quantitative analysis and builds a new method for shared peptides to accurately evaluate abundance of isoforms. For proteins with low abundance, MS/MS total ion count coupled with spectral count is included to ensure accurate protein quantification. Furthermore, freeQuant supports the large-scale functional annotations for complex proteomes. Mitochondrial proteomes from the mouse heart, the mouse liver, and the human heart were used to evaluate the usability and performance of freeQuant. The evaluation showed that the quantitative algorithms implemented in freeQuant can improve accuracy of quantification with better dynamic range.

FRANX. Application for analysis and quantification of the APS fire

International Nuclear Information System (INIS)

Snchez, A.; Osorio, F.; Ontoso, N.

2014-01-01

The FRANX application has been developed by EPRI within the Risk and Reliability User Group in order to facilitate the process of quantification and updating APS Fire (also covers floods and earthquakes). By applying fire scenarios are quantified in the central integrating the tasks performed during the APS fire. This paper describes the main features of the program to allow quantification of an APS Fire. (Author)

Quantification of aortic regurgitation by magnetic resonance velocity mapping

DEFF Research Database (Denmark)

Søndergaard, Lise; Lindvig, K; Hildebrandt, P

1993-01-01

The use of magnetic resonance (MR) velocity mapping in the quantification of aortic valvular blood flow was examined in 10 patients with angiographically verified aortic regurgitation. MR velocity mapping succeeded in identifying and quantifying the regurgitation in all patients, and the regurgit......The use of magnetic resonance (MR) velocity mapping in the quantification of aortic valvular blood flow was examined in 10 patients with angiographically verified aortic regurgitation. MR velocity mapping succeeded in identifying and quantifying the regurgitation in all patients...

HPLC MS/MS method for quantification of meprobamate in human plasma: application to 24/7 clinical toxicology.

Science.gov (United States)

Delavenne, Xavier; Gay-Montchamp, Jean Pierre; Basset, Thierry

2011-01-15

We described the development and full validation of rapid and accurate liquid chromatography method, coupled with tandem mass spectrometry detection, for quantification of meprobamate in human plasma with [(13)C-(2)H(3)]-meprobamate as internal standard. Plasma pretreatment involved a one-step protein precipitation with acetonitrile. Separation was performed by reversed-phase chromatography on a Luna MercuryMS C18 (20 mm×4 mm×3 μm) column using a gradient elution mode. The mobile phase was a mix of distilled water containing 0.1% formic acid and acetonitrile containing 0.1% formic acid. The selected reaction monitoring transitions, in electrospray positive ionization, used for quantification were 219.2→158.2 m/z and 223.1→161.1m/z for meprobamate and internal standard, respectively. Qualification transitions were 219.2→97.0 and 223.1→101.1 m/z for meprobamate and internal standard, respectively. The method was linear over the concentration range of 1-300 mg/L. The intra- and inter-day precision values were below 6.4% and accuracy was within 95.3% and 103.6% for all QC levels (5, 75 and 200 mg/L). The lower limit of quantification was 1 mg/L. Total analysis time was reduced to 6 min including sample preparation. The present method is successfully applied to 24/7 clinical toxicology and demonstrated its usefulness to detect meprobamate poisoning. Copyright © 2010 Elsevier B.V. All rights reserved.

Assessment of spill flow emissions on the basis of measured precipitation and waste water data

Science.gov (United States)

Hochedlinger, Martin; Gruber, Günter; Kainz, Harald

2005-09-01

Combined sewer overflows (CSOs) are substantial contributors to the total emissions into surface water bodies. The emitted pollution results from dry-weather waste water loads, surface runoff pollution and from the remobilisation of sewer deposits and sewer slime during storm events. One possibility to estimate overflow loads is a calculation with load quantification models. Input data for these models are pollution concentrations, e.g. Total Chemical Oxygen Demand (COD tot), Total Suspended Solids (TSS) or Soluble Chemical Oxygen Demand (COD sol), rainfall series and flow measurements for model calibration and validation. It is important for the result of overflow loads to model with reliable input data, otherwise this inevitably leads to bad results. In this paper the correction of precipitation measurements and the sewer online-measurements are presented to satisfy the load quantification model requirements already described. The main focus is on tipping bucket gauge measurements and their corrections. The results evidence the importance of their corrections due the effects on load quantification modelling and show the difference between corrected and not corrected data of storm events with high rain intensities.

Quantification of catechin in the spray-dried extract of Pimenta pseudocaryophyllus

Directory of Open Access Journals (Sweden)

Leonardo C. Silva

Full Text Available Abstract This paper describes the quantification of catechin in the spray-dried extract of Pimenta pseudocaryophyllus (Gomes Landrum, Myrtaceae, citral chemotype using a validated HPLC-PDA method. The method employs a RP-18 column with acetonitrile:water-orthophosphoric acid 0.05% (gradient system and UV detection at 210 nm. The method was demonstrated to be simple, sensitive, specific, linear, precise, accurate and robust. The response was linear over a range of 5–200 µg/ml (r > 0.999. The range of recoveries was 92.27–102.54%. The relative standard deviation values for intra- and inter-day precision studies were 4.30 and 3.78%, respectively. This assay can be readily utilized as quality control method for catechin in the dried extract of P. pseudocaryophyllus.

Isotopic study of water evaporation in a clayey soil, experimentation and modelling

International Nuclear Information System (INIS)

Mathieu, R.; Bariac, T.

1995-01-01

The isotopic theory of soil water evaporation in steady-state was applied to the quantification of shallow water table discharge rates in arid and semi-arid climates. This approach is limited by the time needed by the soil to reach the steady state after the last significant rain event. The 1D numerical model ''Moise'', proposed here, was developed for the simulation of the vertical profiles of water and stable isotope contents in a drying soil for any initial profile and atmospheric condition. Six non-perturbed soil columns of 1.1 m length were taken from Barogo, Burkina Faso and were saturated in the laboratory by infiltration and free drainage of pounding water and then allowed to evaporate freely. The columns were then sequentially sampled after 11, 42, 92, 162 and 253 days of drying for 18 O and 2 H isotopic analyses. 18 O profiles show an exponential shape during the first drying stage with a maximum isotopic enrichment at the surface. During the second drying stage, the penetration of very depleted atmospheric vapor tends to lower the isotopic content at the surface. The water and isotopic content were simulated with the Moise model. The model satisfactory reproduces the hydrodynamic evolution and the qualitative evolution of soil water isotopic content, but it largely overestimates the overall enrichment. It is thus plausible that a fraction of the soil water may keep its own isotopic composition with restricted exchanges with the surrounding mobile water and vapor, while a mobile phase can be affected by the isotopic enrichment. (J.S.). 27 refs., 6 figs., 3 tabs

Quantification by aberration corrected (S)TEM of boundaries formed by symmetry breaking phase transformations

Energy Technology Data Exchange (ETDEWEB)

Schryvers, D., E-mail: nick.schryvers@uantwerpen.be [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Salje, E.K.H. [Department of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ (United Kingdom); Nishida, M. [Department of Engineering Sciences for Electronics and Materials, Faculty of Engineering Sciences, Kyushu University, Kasuga, Fukuoka 816-8580 (Japan); De Backer, A. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Idrissi, H. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Institute of Mechanics, Materials and Civil Engineering, Université Catholique de Louvain, Place Sainte Barbe, 2, B-1348, Louvain-la-Neuve (Belgium); Van Aert, S. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)

2017-05-15

The present contribution gives a review of recent quantification work of atom displacements, atom site occupations and level of crystallinity in various systems and based on aberration corrected HR(S)TEM images. Depending on the case studied, picometer range precisions for individual distances can be obtained, boundary widths at the unit cell level determined or statistical evolutions of fractions of the ordered areas calculated. In all of these cases, these quantitative measures imply new routes for the applications of the respective materials. - Highlights: • Quantification of picometer displacements at ferroelastic twin boundary in CaTiO{sub 3.} • Quantification of kinks in meandering ferroelectric domain wall in LiNbO{sub 3}. • Quantification of column occupation in anti-phase boundary in Co-Pt. • Quantification of atom displacements at twin boundary in Ni-Ti B19′ martensite.

Reagent-Free Quantification of Aqueous Free Chlorine via Electrical Readout of Colorimetrically Functionalized Pencil Lines.

Science.gov (United States)

Mohtasebi, Amirmasoud; Broomfield, Andrew D; Chowdhury, Tanzina; Selvaganapathy, P Ravi; Kruse, Peter

2017-06-21

Colorimetric methods are commonly used to quantify free chlorine in drinking water. However, these methods are not suitable for reagent-free, continuous, and autonomous applications. Here, we demonstrate how functionalization of a pencil-drawn film with phenyl-capped aniline tetramer (PCAT) can be used for quantitative electric readout of free chlorine concentrations. The functionalized film can be implemented in a simple fluidic device for continuous sensing of aqueous free chlorine concentrations. The sensor is selective to free chlorine and can undergo a reagent-free reset for further measurements. Our sensor is superior to electrochemical methods in that it does not require a reference electrode. It is capable of quantification of free chlorine in the range of 0.1-12 ppm with higher precision than colorimetric (absorptivity) methods. The interactions of PCAT with the pencil-drawn film upon exposure to hypochlorite were characterized spectroscopically. A previously reported detection mechanism relied on the measurement of a baseline shift to quantify free chlorine concentrations. The new method demonstrated here measures initial spike size upon exposure to free chlorine. It relies on a fast charge built up on the sensor film due to intermittent PCAT salt formation. It has the advantage of being significantly faster than the measurement of baseline shift, but it cannot be used to detect gradual changes in free chlorine concentration without the use of frequent reset pulses. The stability of PCAT was examined in the presence of free chlorine as a function of pH. While most ions commonly present in drinking water do not interfere with the free chlorine detection, other oxidants may contribute to the signal. Our sensor is easy to fabricate and robust, operates reagent-free, and has very low power requirements and is thus suitable for remote deployment.

Water Microbiology. Bacterial Pathogens and Water

Directory of Open Access Journals (Sweden)

João P. S. Cabral

2010-10-01

Full Text Available Water is essential to life, but many people do not have access to clean and safe drinking water and many die of waterborne bacterial infections. In this review a general characterization of the most important bacterial diseases transmitted through water—cholera, typhoid fever and bacillary dysentery—is presented, focusing on the biology and ecology of the causal agents and on the diseases’ characteristics and their life cycles in the environment. The importance of pathogenic Escherichia coli strains and emerging pathogens in drinking water-transmitted diseases is also briefly discussed. Microbiological water analysis is mainly based on the concept of fecal indicator bacteria. The main bacteria present in human and animal feces (focusing on their behavior in their hosts and in the environment and the most important fecal indicator bacteria are presented and discussed (focusing on the advantages and limitations of their use as markers. Important sources of bacterial fecal pollution of environmental waters are also briefly indicated. In the last topic it is discussed which indicators of fecal pollution should be used in current drinking water microbiological analysis. It was concluded that safe drinking water for all is one of the major challenges of the 21st century and that microbiological control of drinking water should be the norm everywhere. Routine basic microbiological analysis of drinking water should be carried out by assaying the presence of Escherichia coli by culture methods. Whenever financial resources are available, fecal coliform determinations should be complemented with the quantification of enterococci. More studies are needed in order to check if ammonia is reliable for a preliminary screening for emergency fecal pollution outbreaks. Financial resources should be devoted to a better understanding of the ecology and behavior of human and animal fecal bacteria in environmental waters.

A validated HPLC-PDA method for identification and quantification of two bioactive alkaloids, ephedrine and cryptolepine, in different Sida species.

Science.gov (United States)

Chatterjee, Arnab; Kumar, Satyanshu; Chattopadhyay, Sunil K

2013-12-01

A simple, rapid, accurate and reproducible reverse-phase HPLC method has been developed for the identification and quantification of two alkaloids ephedrine and cryptolepine in different extracts of Sida species using photodiode array detection. Baseline separation of the two alkaloids was achieved on a Waters RP-18 X-terra column (250 × 4.6 mm, 5 µm) using a solvent system consisting of a mixture of water containing 0.1% Trifluoroacetic acid (TFA) and acetonitrile in a gradient elution mode with detection at 210 and 280 nm for ephedrine and cryptolepine, respectively. The calibration curves were linear in a concentration range of 10-250 µg/mL for both the alkaloids with correlation coefficient values >0.99. The limits of detection and quantification for ephedrine and cryptolepine were 5 and 10 µg/mL and 2.5 and 5 µg/mL, respectively. Relative standard deviation values for intra-day and inter-day precision were 1.22 and 1.04% for ephedrine and 1.71 and 2.06% for cryptolepine, respectively. Analytical recovery ranged from 92.46 to 103.95%. The developed HPLC method was applied to identify and quantify ephedrine and cryptolepine in different extracts of Sida species. Copyright © 2013 John Wiley & Sons, Ltd.

A fully validated bioanalytical method using an UHPLC-MS/MS system for quantification of DNA and RNA oxidative stress biomarkers.

Science.gov (United States)

Cervinkova, Barbora; Krcmova, Lenka Kujovska; Sestakova, Veronika; Solichova, Dagmar; Solich, Petr

2017-05-01

A new, rapid and effective ultra-high-performance liquid chromatography method with mass spectrometry detection is described for the separation and quantification of 8-hydroxy-2-deoxyguanosine, 8-hydroxyguanosine and creatinine in human urine. The present study uses an isotope-labelled internal standard ([ 15 N] 5 -8-hydroxy-2-deoxyguanosine), a BIO core-shell stationary phase and an isocratic elution of methanol and water. Sample preparation of human urine was performed by solid-phase extraction (SPE) on Oasis HLB cartridges with methanol/water 50:50 (v/v) elution. Extraction recoveries ranged from 98.1% to 109.2%. Biological extracts showed high short-term stability. Several aspects of this procedure make it suitable for both clinical and research purposes: a short elution time of less than 3.2 min, an intra-day precision of 2.5-8.9%, an inter-day precision of 3.4-8.7% and low limits of quantification (27.7 nM for 8-hydroxyguanosine, 6.0 nM for 8-hydroxy-2-deoxyguanosine). Finally, simultaneous analysis of DNA and RNA oxidative stress biomarkers is a useful tool for monitoring disease progression in neurodegenerative disorders and cancer. Graphical abstract UHPLC-MS/MS analysis of DNA and RNA oxidative stress biomarkers.

The use of self-quantification systems for personal health information: big data management activities and prospects.

Science.gov (United States)

Almalki, Manal; Gray, Kathleen; Sanchez, Fernando Martin

2015-01-01

Self-quantification is seen as an emerging paradigm for health care self-management. Self-quantification systems (SQS) can be used for tracking, monitoring, and quantifying health aspects including mental, emotional, physical, and social aspects in order to gain self-knowledge. However, there has been a lack of a systematic approach for conceptualising and mapping the essential activities that are undertaken by individuals who are using SQS in order to improve health outcomes. In this paper, we propose a new model of personal health information self-quantification systems (PHI-SQS). PHI-SQS model describes two types of activities that individuals go through during their journey of health self-managed practice, which are 'self-quantification' and 'self-activation'. In this paper, we aimed to examine thoroughly the first type of activity in PHI-SQS which is 'self-quantification'. Our objectives were to review the data management processes currently supported in a representative set of self-quantification tools and ancillary applications, and provide a systematic approach for conceptualising and mapping these processes with the individuals' activities. We reviewed and compared eleven self-quantification tools and applications (Zeo Sleep Manager, Fitbit, Actipressure, MoodPanda, iBGStar, Sensaris Senspod, 23andMe, uBiome, Digifit, BodyTrack, and Wikilife), that collect three key health data types (Environmental exposure, Physiological patterns, Genetic traits). We investigated the interaction taking place at different data flow stages between the individual user and the self-quantification technology used. We found that these eleven self-quantification tools and applications represent two major tool types (primary and secondary self-quantification systems). In each type, the individuals experience different processes and activities which are substantially influenced by the technologies' data management capabilities. Self-quantification in personal health maintenance

Clinical applications of MS-based protein quantification.

Science.gov (United States)

Sabbagh, Bassel; Mindt, Sonani; Neumaier, Michael; Findeisen, Peter

2016-04-01

Mass spectrometry-based assays are increasingly important in clinical laboratory medicine and nowadays are already commonly used in several areas of routine diagnostics. These include therapeutic drug monitoring, toxicology, endocrinology, pediatrics, and microbiology. Accordingly, some of the most common analyses are therapeutic drug monitoring of immunosuppressants, vitamin D, steroids, newborn screening, and bacterial identification. However, MS-based quantification of peptides and proteins for routine diagnostic use is rather rare up to now despite excellent analytical specificity and good sensitivity. Here, we want to give an overview over current fit-for-purpose assays for MS-based protein quantification. Advantages as well as challenges of this approach will be discussed with focus on feasibility for routine diagnostic use. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Greenhouse effect gases and climatic change: quantification and tools to fight against the emissions

International Nuclear Information System (INIS)

Bizec, R.F.

2006-01-01

The greenhouse effect gases are considered responsible of the climatic change. Their consequences are numerous: increase of the sea level, displacement of the climatic areas, modification of the forests ecosystems, rarefaction of water, progressively decrease of glaciers... This fast modification of the climate would lead to the increase of natural hazards as hurricanes, storms, hails and so on. It is then a necessity to reduce as fast as possible the greenhouse effect gases. The author describes in a first part the methods of the greenhouse effect gases quantification and in the second part the tools to fight these gases, regulations, standards, economic tools, national tools and the projects. (A.L.B.)

Quantification of regional leachate variance from municipal solid waste landfills in China

DEFF Research Database (Denmark)

Yang, Na; Damgaard, Anders; Kjeldsen, Peter

2015-01-01

The quantity of leachate is crucial when assessing pollution emanating from municipal landfills. In most cases, existing leachate quantification measures only take into account one source - precipitation, which resulted in serious underestimation in China due to its waste properties: high moisture...... contents. To overcome this problem, a new estimation method was established considering two sources: (1) precipitation infiltrated throughout waste layers, which was simulated with the HELP model, (2) water squeezed out of the waste itself, which was theoretically calculated using actual data of Chinese...... waste. The two sources depended on climate conditions and waste characteristics, respectively, which both varied in different regions. In this study, 31 Chinese cities were investigated and classified into three geographic regions according to landfill leachate generation performance: northwestern China...

RESONANCE SELF-SHIELDING EFFECT IN UNCERTAINTY QUANTIFICATION OF FISSION REACTOR NEUTRONICS PARAMETERS

Directory of Open Access Journals (Sweden)

GO CHIBA

2014-06-01

Full Text Available In order to properly quantify fission reactor neutronics parameter uncertainties, we have to use covariance data and sensitivity profiles consistently. In the present paper, we establish two consistent methodologies for uncertainty quantification: a self-shielded cross section-based consistent methodology and an infinitely-diluted cross section-based consistent methodology. With these methodologies and the covariance data of uranium-238 nuclear data given in JENDL-3.3, we quantify uncertainties of infinite neutron multiplication factors of light water reactor and fast reactor fuel cells. While an inconsistent methodology gives results which depend on the energy group structure of neutron flux and neutron-nuclide reaction cross section representation, both the consistent methodologies give fair results with no such dependences.

Objective quantification of perturbations produced with a piecewise PV inversion technique

Directory of Open Access Journals (Sweden)

L. Fita

2007-11-01

Full Text Available PV inversion techniques have been widely used in numerical studies of severe weather cases. These techniques can be applied as a way to study the sensitivity of the responsible meteorological system to changes in the initial conditions of the simulations. Dynamical effects of a collection of atmospheric features involved in the evolution of the system can be isolated. However, aspects, such as the definition of the atmospheric features or the amount of change in the initial conditions, are largely case-dependent and/or subjectively defined. An objective way to calculate the modification of the initial fields is proposed to alleviate this problem. The perturbations are quantified as the mean absolute variations of the total energy between the original and modified fields, and an unique energy variation value is fixed for all the perturbations derived from different PV anomalies. Thus, PV features of different dimensions and characteristics introduce the same net modification of the initial conditions from an energetic point of view. The devised quantification method is applied to study the high impact weather case of 9–11 November 2001 in the Western Mediterranean basin, when a deep and strong cyclone was formed. On the Balearic Islands 4 people died, and sustained winds of 30 ms−1 and precipitation higher than 200 mm/24 h were recorded. Moreover, 700 people died in Algiers during the first phase of the event. The sensitivities to perturbations in the initial conditions of a deep upper level trough, the anticyclonic system related to the North Atlantic high and the surface thermal anomaly related to the baroclinicity of the environment are determined. Results reveal a high influence of the upper level trough and the surface thermal anomaly and a minor role of the North Atlantic high during the genesis of the cyclone.

The Use of Importance Measures for Quantification of Multi-unit Risk

Energy Technology Data Exchange (ETDEWEB)

Jang, Seung-Cheol; Lim, Ho-Gon [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2015-10-15

In this paper, we focus on the quantification of the multi-unit accident sequences frequencies, i.e., conditional core damage probability (CCDP) for a MUI from the SUR model. The paper proposes a method for the estimation of the r-units CCDP considered the interunit dependency, using importance measures. Note that the 1{sup st} and 2{sup nd} terms in the left hand side of the equation have different units of risk measure, i.e., reactor operating year and site operating year, respectively. The total risk of multi-unit reactor accidents concurred by the independent accident sequences each single-unit (the 1{sup st} term in the right-hand side of the Equation 1) can approximate the sum of n single-unit risk conservatively. It corresponds to the traditional multi-unit risk profile concept having used since post-PSA era. Simultaneously, the Equation 1 represent that multi-unit risk within a site with n units has been underestimated as much as the amount of the 2{sup nd} term (MUR by multi-unit initiators), which consists of three parts: 1) the frequency estimation of a MUI, , 2) the quantification of the multi-unit accident sequences frequencies for a MUI, , and 3) the multi-unit consequence analysis for a MUI. The paper proposes a method for the estimation of the r-units CCDP considered the inter-unit dependency, using importance measures. It can facilitate the treatment of the inter-unit dependencies in the multi-unit risk model and can give more comprehensive and more practicable technical platform for estimating multi-unit site risk.

The Use of Importance Measures for Quantification of Multi-unit Risk

International Nuclear Information System (INIS)

Jang, Seung-Cheol; Lim, Ho-Gon

2015-01-01

In this paper, we focus on the quantification of the multi-unit accident sequences frequencies, i.e., conditional core damage probability (CCDP) for a MUI from the SUR model. The paper proposes a method for the estimation of the r-units CCDP considered the interunit dependency, using importance measures. Note that the 1 st and 2 nd terms in the left hand side of the equation have different units of risk measure, i.e., reactor operating year and site operating year, respectively. The total risk of multi-unit reactor accidents concurred by the independent accident sequences each single-unit (the 1 st term in the right-hand side of the Equation 1) can approximate the sum of n single-unit risk conservatively. It corresponds to the traditional multi-unit risk profile concept having used since post-PSA era. Simultaneously, the Equation 1 represent that multi-unit risk within a site with n units has been underestimated as much as the amount of the 2 nd term (MUR by multi-unit initiators), which consists of three parts: 1) the frequency estimation of a MUI, , 2) the quantification of the multi-unit accident sequences frequencies for a MUI, , and 3) the multi-unit consequence analysis for a MUI. The paper proposes a method for the estimation of the r-units CCDP considered the inter-unit dependency, using importance measures. It can facilitate the treatment of the inter-unit dependencies in the multi-unit risk model and can give more comprehensive and more practicable technical platform for estimating multi-unit site risk

Assessing The Ecosystem Service Freshwater Production From An Integrated Water Resources Management Perspective. Case Study: The Tormes Water Resources System (Spain)

Science.gov (United States)

Momblanch, Andrea; Paredes-Arquiola, Javier; Andreu, Joaquín; Solera, Abel

2014-05-01

The Ecosystem Services are defined as the conditions and processes through which natural ecosystems, and the species that make them up, sustain and fulfil human life. A strongly related concept is the Integrated Water Resources Management. It is a process which promotes the coordinated development and management of water, land and related resources in order to maximise the resultant economic and social welfare in an equitable manner without compromising the sustainability of vital ecosystems. From these definitions, it is clear that in order to cover so many water management and ecosystems related aspects the use of integrative models is increasingly necessary. In this study, we propose to link a hydrologic model and a water allocation model in order to assess the Freshwater Production as an Ecosystem Service in anthropised river basins. First, the hydrological model allows determining the volume of water generated by each sub-catchment; that is, the biophysical quantification of the service. This result shows the relevance of each sub-catchment as a source of freshwater and how this could change if the land uses are modified. On the other hand, the water management model allocates the available water resources among the different water uses. Then, it is possible to provide an economic value to the water resources through the use of demand curves, or other economic concepts. With this second model, we are able to obtain the economical quantification of the Ecosystem Service. Besides, the influence of water management and infrastructures on the service provision can be analysed. The methodology is applied to the Tormes Water Resources System, in Spain. The software used are EVALHID and SIMGES, for hydrological and management aspects, respectively. Both models are included in the Decision Support System Shell AQUATOOL for water resources planning and management. A scenario approach is presented to illustrate the potential of the methodology, including the current

Legionella pneumophila: From potable water to treated greywater; quantification and removal during treatment.

Science.gov (United States)

Blanky, Marina; Rodríguez-Martínez, Sara; Halpern, Malka; Friedler, Eran

2015-11-15

Greywater is an alternative water source that can help alleviate stress on depleted water resources. The main options for greywater reuse are toilet flushing and garden irrigation, both producing aerosols. For that reason transmission of inhalable pathogens like Legionella present a potential risk. To improve the understanding about Legionella in greywater, we traced the pathogen seasonally from the potable water system to the final steps of the greywater treatment in four houses in northern Israel. Physicochemical and microbiological parameters were analyzed in order to assess background greywater quality and to establish possible associations with Legionella. The mean concentrations of Legionella pneumophila isolated from the potable water system were 6.4×10(2) and 5.9×10(3) cfu/l in cold and hot water respectively. By amending the ISO protocol for Legionella isolation from drinking water, we succeeded in quantifying Legionella in greywater. The mean Legionella concentrations that were found in raw, treated and treated chlorinated greywater were 1.2×10(5), 2.4×10(4) and 5.7×10(3) cfu/l respectively. While Legionella counts in potable water presented a seasonal pattern with high concentrations in summer, its counts in greywater presented an almost inversed pattern. Greywater treatment resulted in 95% decrease in Legionella counts. No significant difference was found between Legionella concentrations in potable water and the treated chlorinated greywater. These findings indicate that regarding Legionella, reusing treated chlorinated greywater would exhibit a risk that is very similar to the risk associated with using potable water for the same non-potable uses. Copyright © 2015 Elsevier B.V. All rights reserved.

Uncertainty Quantification in Aerodynamics Simulations, Phase I

Data.gov (United States)

National Aeronautics and Space Administration — The objective of the proposed work (Phases I and II) is to develop uncertainty quantification methodologies and software suitable for use in CFD simulations of...

Modeling the initiation of Primary Water Stress Corrosion Cracking in nickel base alloys 182 and 82 of Pressurized Water Reactors

International Nuclear Information System (INIS)

Wehbi, Mickael

2014-01-01

Nickel base welds are widely used to assemble components of the primary circuit of Pressurized Water Reactors (PWR) plants. International experience shows an increasing number of Stress Corrosion Cracks (SCC) in nickel base welds 182 and 82 which motivates the development of models predicting the time to SCC initiation for these materials. SCC involves several parameters such as materials, mechanics or environment interacting together. The goal of this study is to have a better understanding of the physical mechanisms occurring at grains boundaries involved in SCC. In-situ tensile test carried out on oxidized alloy 182 evidenced dispersion in the susceptibility to corrosion of grain boundaries. Moreover, the correlation between oxidation and cracking coupled with micro-mechanical simulations on synthetic polycrystalline aggregate, allowed to propose a cracking criterion of oxidized grain boundaries which is defined by both critical oxidation depth and local stress level. Due to the key role of intergranular oxidation in SCC and since significant dispersion is observed between grain boundaries, oxidation tests were performed on alloys 182 and 82 in order to model the intergranular oxidation kinetics as a function of chromium carbides precipitation, temperature and dissolved hydrogen content. The model allows statistical analyses and is embedded in a local initiation model. In this model, SCC initiation is defined by the cracking of the intergranular oxide and is followed by slow and fast crack growth until the crack depth reaches a given value. Simplifying assumptions were necessary to identify laws used in the SCC model. However, these laws will be useful to determine experimental conditions of future investigations carried out to improve the calibration used parameters. (author)

The green and blue water footprint of paper products: methodological considerations and quantification

NARCIS (Netherlands)

van Oel, P.R.; Hoekstra, Arjen Ysbert

2010-01-01

For a hardcopy of this report, printed in the Netherlands, an estimated 200 litres of water have been used. Water is required during different stages in the production process, from growing wood to processing pulp into the final consumer product. Most of the water is consumed in the forestry stage,

Quantification Model for Estimating Temperature Field Distributions of Apple Fruit

OpenAIRE

Zhang , Min; Yang , Le; Zhao , Huizhong; Zhang , Leijie; Zhong , Zhiyou; Liu , Yanling; Chen , Jianhua

2009-01-01

International audience; A quantification model of transient heat conduction was provided to simulate apple fruit temperature distribution in the cooling process. The model was based on the energy variation of apple fruit of different points. It took into account, heat exchange of representative elemental volume, metabolism heat and external heat. The following conclusions could be obtained: first, the quantification model can satisfactorily describe the tendency of apple fruit temperature dis...

Perfusion Quantification Using Gaussian Process Deconvolution

DEFF Research Database (Denmark)

Andersen, Irene Klærke; Have, Anna Szynkowiak; Rasmussen, Carl Edward

2002-01-01

The quantification of perfusion using dynamic susceptibility contrast MRI (DSC-MRI) requires deconvolution to obtain the residual impulse response function (IRF). In this work, a method using the Gaussian process for deconvolution (GPD) is proposed. The fact that the IRF is smooth is incorporated...

Temperature dependence of postmortem MR quantification for soft tissue discrimination

Energy Technology Data Exchange (ETDEWEB)

Zech, Wolf-Dieter; Schwendener, Nicole; Jackowski, Christian [University of Bern, From the Institute of Forensic Medicine, Bern (Switzerland); Persson, Anders; Warntjes, Marcel J. [University of Linkoeping, The Center for Medical Image Science and Visualization (CMIV), Linkoeping (Sweden)

2015-08-15

To investigate and correct the temperature dependence of postmortem MR quantification used for soft tissue characterization and differentiation in thoraco-abdominal organs. Thirty-five postmortem short axis cardiac 3-T MR examinations were quantified using a quantification sequence. Liver, spleen, left ventricular myocardium, pectoralis muscle and subcutaneous fat were analysed in cardiac short axis images to obtain mean T1, T2 and PD tissue values. The core body temperature was measured using a rectally inserted thermometer. The tissue-specific quantitative values were related to the body core temperature. Equations to correct for temperature differences were generated. In a 3D plot comprising the combined data of T1, T2 and PD, different organs/tissues could be well differentiated from each other. The quantitative values were influenced by the temperature. T1 in particular exhibited strong temperature dependence. The correction of quantitative values to a temperature of 37 C resulted in better tissue discrimination. Postmortem MR quantification is feasible for soft tissue discrimination and characterization of thoraco-abdominal organs. This provides a base for computer-aided diagnosis and detection of tissue lesions. The temperature dependence of the T1 values challenges postmortem MR quantification. Equations to correct for the temperature dependence are provided. (orig.)

Temperature dependence of postmortem MR quantification for soft tissue discrimination

International Nuclear Information System (INIS)

Zech, Wolf-Dieter; Schwendener, Nicole; Jackowski, Christian; Persson, Anders; Warntjes, Marcel J.

2015-01-01

To investigate and correct the temperature dependence of postmortem MR quantification used for soft tissue characterization and differentiation in thoraco-abdominal organs. Thirty-five postmortem short axis cardiac 3-T MR examinations were quantified using a quantification sequence. Liver, spleen, left ventricular myocardium, pectoralis muscle and subcutaneous fat were analysed in cardiac short axis images to obtain mean T1, T2 and PD tissue values. The core body temperature was measured using a rectally inserted thermometer. The tissue-specific quantitative values were related to the body core temperature. Equations to correct for temperature differences were generated. In a 3D plot comprising the combined data of T1, T2 and PD, different organs/tissues could be well differentiated from each other. The quantitative values were influenced by the temperature. T1 in particular exhibited strong temperature dependence. The correction of quantitative values to a temperature of 37 C resulted in better tissue discrimination. Postmortem MR quantification is feasible for soft tissue discrimination and characterization of thoraco-abdominal organs. This provides a base for computer-aided diagnosis and detection of tissue lesions. The temperature dependence of the T1 values challenges postmortem MR quantification. Equations to correct for the temperature dependence are provided. (orig.)

Quantification is Neither Necessary Nor Sufficient for Measurement

International Nuclear Information System (INIS)

Mari, Luca; Maul, Andrew; Torres Irribarra, David; Wilson, Mark

2013-01-01

Being an infrastructural, widespread activity, measurement is laden with stereotypes. Some of these concern the role of measurement in the relation between quality and quantity. In particular, it is sometimes argued or assumed that quantification is necessary for measurement; it is also sometimes argued or assumed that quantification is sufficient for or synonymous with measurement. To assess the validity of these positions the concepts of measurement and quantitative evaluation should be independently defined and their relationship analyzed. We contend that the defining characteristic of measurement should be the structure of the process, not a feature of its results. Under this perspective, quantitative evaluation is neither sufficient nor necessary for measurement

Detection and quantification of proteins and cells by use of elemental mass spectrometry: progress and challenges.

Science.gov (United States)

Yan, Xiaowen; Yang, Limin; Wang, Qiuquan

2013-07-01

Much progress has been made in identification of the proteins in proteomes, and quantification of these proteins has attracted much interest. In addition to popular tandem mass spectrometric methods based on soft ionization, inductively coupled plasma mass spectrometry (ICPMS), a typical example of mass spectrometry based on hard ionization, usually used for analysis of elements, has unique advantages in absolute quantification of proteins by determination of an element with a definite stoichiometry in a protein or attached to the protein. In this Trends article, we briefly describe state-of-the-art ICPMS-based methods for quantification of proteins, emphasizing protein-labeling and element-tagging strategies developed on the basis of chemically selective reactions and/or biospecific interactions. Recent progress from protein to cell quantification by use of ICPMS is also discussed, and the possibilities and challenges of ICPMS-based protein quantification for universal, selective, or targeted quantification of proteins and cells in a biological sample are also discussed critically. We believe ICPMS-based protein quantification will become ever more important in targeted quantitative proteomics and bioanalysis in the near future.

Standardless quantification by parameter optimization in electron probe microanalysis

International Nuclear Information System (INIS)

Limandri, Silvina P.; Bonetto, Rita D.; Josa, Víctor Galván; Carreras, Alejo C.; Trincavelli, Jorge C.

2012-01-01

A method for standardless quantification by parameter optimization in electron probe microanalysis is presented. The method consists in minimizing the quadratic differences between an experimental spectrum and an analytical function proposed to describe it, by optimizing the parameters involved in the analytical prediction. This algorithm, implemented in the software POEMA (Parameter Optimization in Electron Probe Microanalysis), allows the determination of the elemental concentrations, along with their uncertainties. The method was tested in a set of 159 elemental constituents corresponding to 36 spectra of standards (mostly minerals) that include trace elements. The results were compared with those obtained with the commercial software GENESIS Spectrum® for standardless quantification. The quantifications performed with the method proposed here are better in the 74% of the cases studied. In addition, the performance of the method proposed is compared with the first principles standardless analysis procedure DTSA for a different data set, which excludes trace elements. The relative deviations with respect to the nominal concentrations are lower than 0.04, 0.08 and 0.35 for the 66% of the cases for POEMA, GENESIS and DTSA, respectively. - Highlights: ► A method for standardless quantification in EPMA is presented. ► It gives better results than the commercial software GENESIS Spectrum. ► It gives better results than the software DTSA. ► It allows the determination of the conductive coating thickness. ► It gives an estimation for the concentration uncertainties.

Electrochemical quantification of some water soluble vitamins in commercial multi-vitamin using poly-amino acid caped by graphene quantum dots nanocomposite as dual signal amplification elements.

Science.gov (United States)

Shadjou, Nasrin; Hasanzadeh, Mohammad; Omari, Ali

2017-12-15

Rapid analyses of some water soluble vitamins (Vitamin B2, B9, and C) in commercial multi vitamins could be routinely performed in analytical laboratories. This study reports on the electropolymerization of a low toxic and biocompatible polymer "poly aspartic acid-graphene quantum dots" as a novel strategy for surface modification of glassy carbon electrode and preparation a new interface for measurement of selected vitamins in commercial multi vitamins. Electrochemical deposition, as a well-controlled synthesis procedure, has been used for subsequently layer-by-layer preparation of graphene quantum dots nanostructures on a poly aspartic acid using cyclic voltammetry techniques in the regime of -1.5 to 2 V. The field emission scanning electron microscopy indicated immobilization of graphene quantum dots onto poly aspartic acid film. The modified electrode possessed as an effective electroactivity for detection of water soluble vitamins by using cyclic voltammetry, chronoamperometry and differential pulse voltammetry. Enhancement of peak currents is ascribed to the fast heterogeneous electron transfer kinetics that arise from the synergistic coupling between the excellent properties of poly aspartic acid as semiconducting polymer, graphene quantum dots as high density of edge plane sites and chemical modification. Under the optimized analysis conditions, the prepared sensor for detection of VB2, VB9, and VC showed a low limit of quantification 0.22, 0.1, 0.1 μM, respectively. Copyright © 2017. Published by Elsevier Inc.

Review of advances in human reliability analysis of errors of commission-Part 2: EOC quantification

International Nuclear Information System (INIS)

Reer, Bernhard

2008-01-01

In close connection with examples relevant to contemporary probabilistic safety assessment (PSA), a review of advances in human reliability analysis (HRA) of post-initiator errors of commission (EOCs), i.e. inappropriate actions under abnormal operating conditions, has been carried out. The review comprises both EOC identification (part 1) and quantification (part 2); part 2 is presented in this article. Emerging HRA methods in this field are: ATHEANA, MERMOS, the EOC HRA method developed by Gesellschaft fuer Anlagen- und Reaktorsicherheit (GRS), the MDTA method and CREAM. The essential advanced features are on the conceptual side, especially to envisage the modeling of multiple contexts for an EOC to be quantified (ATHEANA, MERMOS and MDTA), in order to explicitly address adverse conditions. There is promising progress in providing systematic guidance to better account for cognitive demands and tendencies (GRS, CREAM), and EOC recovery (MDTA). Problematic issues are associated with the implementation of multiple context modeling and the assessment of context-specific error probabilities. Approaches for task or error opportunity scaling (CREAM, GRS) and the concept of reference cases (ATHEANA outlook) provide promising orientations for achieving progress towards data-based quantification. Further development work is needed and should be carried out in close connection with large-scale applications of existing approaches

Identification and quantification of pesticide residues in water samples of Dhamrai Upazila, Bangladesh

Science.gov (United States)

Hasanuzzaman, M.; Rahman, M. A.; Salam, M. A.

2017-10-01

Being agricultural country, different types of pesticides are widely used in Bangladesh to prevent the crop losses due to pest attack which are ultimately drain to the water bodies. The present study was conducted to identify and quantify the organochlorine (DDT, DDE and DDD), organophosphorus (malathion, diazinon and chloropyrifos) and carbamate (carbaryl) residues in water samples of different sources from Dhamrai upazila of Bangladesh using high performance liquid chromatography (HPLC) equipped with ultra violate (UV) detector. Thirty water samples from fish pond, cultivated land and tube-well were collected in winter season to analyze the pesticide residues. Among the organophosphorus pesticides, malathion was present in seven water samples ranging from 42.58 to 922.8 μg/L, whereas diazinon was detected in water sample-8 (WS-8) and the concentration was 31.5 μg/L. None of the tested water samples was found to be contaminated with chlorpyrifos, carbaryl or DDT and its metabolites (DDE and DDD). Except for a tube-well water sample, concentrations of the detected residues are above the acceptable limit for human body as assigned by different organizations. To avoid the possible health hazards, the indiscriminate application of pesticides should be restricted and various substitute products like bio-pesticide should be introduced in a broad scale as soon as possible.

The NASA Langley Multidisciplinary Uncertainty Quantification Challenge

Science.gov (United States)

Crespo, Luis G.; Kenny, Sean P.; Giesy, Daniel P.

2014-01-01

This paper presents the formulation of an uncertainty quantification challenge problem consisting of five subproblems. These problems focus on key aspects of uncertainty characterization, sensitivity analysis, uncertainty propagation, extreme-case analysis, and robust design.

Reconstruction of initial pressure from limited view photoacoustic images using deep learning

Science.gov (United States)

Waibel, Dominik; Gröhl, Janek; Isensee, Fabian; Kirchner, Thomas; Maier-Hein, Klaus; Maier-Hein, Lena

2018-02-01

Quantification of tissue properties with photoacoustic (PA) imaging typically requires a highly accurate representation of the initial pressure distribution in tissue. Almost all PA scanners reconstruct the PA image only from a partial scan of the emitted sound waves. Especially handheld devices, which have become increasingly popular due to their versatility and ease of use, only provide limited view data because of their geometry. Owing to such limitations in hardware as well as to the acoustic attenuation in tissue, state-of-the-art reconstruction methods deliver only approximations of the initial pressure distribution. To overcome the limited view problem, we present a machine learning-based approach to the reconstruction of initial pressure from limited view PA data. Our method involves a fully convolutional deep neural network based on a U-Net-like architecture with pixel-wise regression loss on the acquired PA images. It is trained and validated on in silico data generated with Monte Carlo simulations. In an initial study we found an increase in accuracy over the state-of-the-art when reconstructing simulated linear-array scans of blood vessels.

1H NMR quantification in very dilute toxin solutions: application to anatoxin-a analysis.

Science.gov (United States)

Dagnino, Denise; Schripsema, Jan

2005-08-01

A complete procedure is described for the extraction, detection and quantification of anatoxin-a in biological samples. Anatoxin-a is extracted from biomass by a routine acid base extraction. The extract is analysed by GC-MS, without the need of derivatization, with a detection limit of 0.5 ng. A method was developed for the accurate quantification of anatoxin-a in the standard solution to be used for the calibration of the GC analysis. 1H NMR allowed the accurate quantification of microgram quantities of anatoxin-a. The accurate quantification of compounds in standard solutions is rarely discussed, but for compounds like anatoxin-a (toxins with prices in the range of a million dollar a gram), of which generally only milligram quantities or less are available, this factor in the quantitative analysis is certainly not trivial. The method that was developed can easily be adapted for the accurate quantification of other toxins in very dilute solutions.

Advancing agricultural greenhouse gas quantification*

Science.gov (United States)

Olander, Lydia; Wollenberg, Eva; Tubiello, Francesco; Herold, Martin

2013-03-01

, multiple development goals can be reinforced by specific climate funding granted on the basis of multiple benefits and synergies, for instance through currently negotiated mechanisms such as Nationally Appropriate Mitigation Actions (NAMAs) (REDD+, Kissinger et al 2012). 3. Challenges to quantifying GHG information for the agricultural sector The quantification of GHG emissions from agriculture is fundamental to identifying mitigation solutions that are consistent with the goals of achieving greater resilience in production systems, food security, and rural welfare. GHG emissions data are already needed for such varied purposes as guiding national planning for low-emissions development, generating and trading carbon credits, certifying sustainable agriculture practices, informing consumers' choices with regard to reducing their carbon footprints, assessing product supply chains, and supporting farmers in adopting less carbon-intensive farming practices. Demonstrating the robustness, feasibility, and cost effectiveness of agricultural GHG inventories and monitoring is a necessary technical foundation for including agriculture in the international negotiations under the United Nations Framework Convention on Climate Change (UNFCCC), and is needed to provide robust data and methodology platforms for global corporate supply-chain initiatives (e.g., SAFA, FAO 2012). Given such varied drivers for GHG reductions, there are a number of uses for agricultural GHG information, including (1) reporting and accounting at the national or company level, (2) land-use planning and management to achieve specific objectives, (3) monitoring and evaluating impact of management, (4) developing a credible and thus tradable offset credit, and (5) research and capacity development. The information needs for these uses is likely to differ in the required level of certainty, scale of analysis, and need for comparability across systems or repeatability over time, and they may depend on whether

Uncertainty Quantification with Applications to Engineering Problems

DEFF Research Database (Denmark)

Bigoni, Daniele

in measurements, predictions and manufacturing, and we can say that any dynamical system used in engineering is subject to some of these uncertainties. The first part of this work presents an overview of the mathematical framework used in Uncertainty Quantification (UQ) analysis and introduces the spectral tensor...... and thus the UQ analysis of the associated systems will benefit greatly from the application of methods which require few function evaluations. We first consider the propagation of the uncertainty and the sensitivity analysis of the non-linear dynamics of railway vehicles with suspension components whose......-scale problems, where efficient methods are necessary with today’s computational resources. The outcome of this work was also the creation of several freely available Python modules for Uncertainty Quantification, which are listed and described in the appendix....

Uncertainty quantification and inference of Manning's friction coefficients using DART buoy data during the Tōhoku tsunami

KAUST Repository

Sraj, Ihab; Mandli, Kyle T.; Knio, Omar; Dawson, Clint N.; Hoteit, Ibrahim

2014-01-01

Tsunami computational models are employed to explore multiple flooding scenarios and to predict water elevations. However, accurate estimation of water elevations requires accurate estimation of many model parameters including the Manning's n friction parameterization. Our objective is to develop an efficient approach for the uncertainty quantification and inference of the Manning's n coefficient which we characterize here by three different parameters set to be constant in the on-shore, near-shore and deep-water regions as defined using iso-baths. We use Polynomial Chaos (PC) to build an inexpensive surrogate for the G. eoC. law model and employ Bayesian inference to estimate and quantify uncertainties related to relevant parameters using the DART buoy data collected during the Tōhoku tsunami. The surrogate model significantly reduces the computational burden of the Markov Chain Monte-Carlo (MCMC) sampling of the Bayesian inference. The PC surrogate is also used to perform a sensitivity analysis.

Uncertainty quantification and inference of Manning's friction coefficients using DART buoy data during the Tōhoku tsunami

KAUST Repository

Sraj, Ihab

2014-11-01

Tsunami computational models are employed to explore multiple flooding scenarios and to predict water elevations. However, accurate estimation of water elevations requires accurate estimation of many model parameters including the Manning\\'s n friction parameterization. Our objective is to develop an efficient approach for the uncertainty quantification and inference of the Manning\\'s n coefficient which we characterize here by three different parameters set to be constant in the on-shore, near-shore and deep-water regions as defined using iso-baths. We use Polynomial Chaos (PC) to build an inexpensive surrogate for the G. eoC. law model and employ Bayesian inference to estimate and quantify uncertainties related to relevant parameters using the DART buoy data collected during the Tōhoku tsunami. The surrogate model significantly reduces the computational burden of the Markov Chain Monte-Carlo (MCMC) sampling of the Bayesian inference. The PC surrogate is also used to perform a sensitivity analysis.

Quantification of Protozoa and Viruses from Small Water Volumes

Directory of Open Access Journals (Sweden)

J. Alfredo Bonilla

2015-06-01

Full Text Available Large sample volumes are traditionally required for the analysis of waterborne pathogens. The need for large volumes greatly limits the number of samples that can be processed. The aims of this study were to compare extraction and detection procedures for quantifying protozoan parasites and viruses from small volumes of marine water. The intent was to evaluate a logistically simpler method of sample collection and processing that would facilitate direct pathogen measures as part of routine monitoring programs. Samples were collected simultaneously using a bilayer device with protozoa capture by size (top filter and viruses capture by charge (bottom filter. Protozoan detection technologies utilized for recovery of Cryptosporidium spp. and Giardia spp. were qPCR and the more traditional immunomagnetic separation—IFA-microscopy, while virus (poliovirus detection was based upon qPCR versus plaque assay. Filters were eluted using reagents consistent with the downstream detection technologies. Results showed higher mean recoveries using traditional detection methods over qPCR for Cryptosporidium (91% vs. 45% and poliovirus (67% vs. 55% whereas for Giardia the qPCR-based methods were characterized by higher mean recoveries (41% vs. 28%. Overall mean recoveries are considered high for all detection technologies. Results suggest that simultaneous filtration may be suitable for isolating different classes of pathogens from small marine water volumes. More research is needed to evaluate the suitability of this method for detecting pathogens at low ambient concentration levels.

Wind and water erosion control on semiarid lands

International Nuclear Information System (INIS)

Siddoway, F.H.

1980-01-01

Commercial crop production on semiarid lands is difficult because insufficient water is often present to manage the system effectively. Erosion control presents the major management problem. The factors contributing to wind erosion and their interaction have been quantified into a wind erosion equation. The control of wind erosion through agronomic alteration of the various factors is discussed. The quantification and control of water erosion is also discussed with respect to the Universal Soil Loss Equation. Radioisotopes tracers have been used in conjunction with these erosion equations to measure soil losses. (author)

The toxic benthic dinoflagellate Ostreopsis ovata: Quantification of proliferation along the coastline of Genoa, Italy

International Nuclear Information System (INIS)

Mangialajo, L.; Bertolotto, R.; Cattaneo-Vietti, R.; Chiantore, M.; Grillo, C.; Lemee, R.; Melchiorre, N.; Moretto, P.; Povero, P.; Ruggieri, N.

2008-01-01

Toxic harmful algal bloom (HAB) occurrence is becoming more frequent and problematic in highly urbanized coastal zones. In summer 2005 along the urbanized Genoa coastline (Ligurian Sea, North western Mediterranean Sea), local first aid stations treated about 200 people, who all showed similar symptoms following exposure to marine aerosols. The link with proliferation of Ostreopsis ovata was made, and it highlighted for the first time, the risks that benthic HABs may represent in highly urbanised temperate areas. Subsequently, a specific monitoring plan was designed and implemented in the same area in July 2006, before the first signs of Ostreopsis proliferation were detected. Here we report on this quantification of an Ostreopsis ovata bloom in the Ligurian Sea. Cells were quantified both in the water column and in the epiphytic community on macrophytes. Our results suggest a role of sea water temperature and weather conditions in favouring bloom development

Quantification of Groundwater Discharge in a Subalpine Stream Using Radon-222

Directory of Open Access Journals (Sweden)

Elizabeth Avery

2018-01-01

Full Text Available During the dry months of the water year in Mediterranean climates, groundwater influx is essential to perennial streams for sustaining ecosystem health and regulating water temperature. Predicted earlier peak flow due to climate change may result in decreased baseflow and the transformation of perennial streams to intermittent streams. In this study, naturally occurring radon-222 (222Rn was used as a tracer of groundwater influx to Martis Creek, a subalpine stream near Lake Tahoe, CA. Groundwater 222Rn is estimated based on measurements of 222Rn activity in nearby deep wells and springs. To determine the degassing constant (needed for quantification of water and gas flux, an extrinsic tracer, xenon (Xe, was introduced to the stream and monitored at eight downstream locations. The degassing constant for 222Rn is based on the degassing constant for Xe, and was determined to be 1.9–9.0 m/day. Applying a simple model in which stream 222Rn activity is a balance between the main 222Rn source (groundwater and sink (volatilization, the influx in reaches of the upstream portion of Martis Creek was calculated to be <1 to 15 m3/day/m, which cumulatively constitutes a significant portion of the stream discharge. Experiments constraining 222Rn emanation from hyporheic zone sediments suggest that this should be considered a maximum rate of influx. Groundwater influx is typically difficult to identify and quantify, and the method employed here is useful for identifying locations for focused stream flow measurements, for formulating a water budget, and for quantifying streamwater–groundwater interaction.

Lung involvement quantification in chest radiographs; Quantificacao de comprometimento pulmonar em radiografias de torax

Energy Technology Data Exchange (ETDEWEB)

Giacomini, Guilherme; Alvarez, Matheus; Oliveira, Marcela de; Miranda, Jose Ricardo A. [Universidade Estadual Paulista Julio de Mesquita Filho (UNESP), Botucatu, SP (Brazil). Instituto de Biociencias. Departamento de Fisica e Biofisica; Pina, Diana R.; Pereira, Paulo C.M.; Ribeiro, Sergio M., E-mail: giacomini@ibb.unesp.br [Universidade Estadual Paulista Julio de Mesquita Filho (UNESP), Botucatu, SP (Brazil). Faculdade de Medicina. Departamento de Doencas Tropicais e Diagnostico por Imagem

2014-12-15

Tuberculosis (TB) caused by Mycobacterium tuberculosis, is an infectious disease which remains a global health problem. The chest radiography is the commonly method employed to assess the TB's evolution. The methods for quantification of abnormalities of chest are usually performed on CT scans (CT). This quantification is important to assess the TB evolution and treatment and comparing different treatments. However, precise quantification is not feasible for the amount of CT scans required. The purpose of this work is to develop a methodology for quantification of lung damage caused by TB through chest radiographs. It was developed an algorithm for computational processing of exams in Matlab, which creates a lungs' 3D representation, with compromised dilated regions inside. The quantification of lung lesions was also made for the same patients through CT scans. The measurements from the two methods were compared and resulting in strong correlation. Applying statistical Bland and Altman, all samples were within the limits of agreement, with a confidence interval of 95%. The results showed an average variation of around 13% between the two quantification methods. The results suggest the effectiveness and applicability of the method developed, providing better risk-benefit to the patient and cost-benefit ratio for the institution. (author)

Quantification of virus syndrome in chili peppers

African Journals Online (AJOL)

Jane

2011-06-15

Jun 15, 2011 ... alternative for the quantification of the disease' syndromes in regards to this crop. The result of these ..... parison of treatments such as cultivars or control measures and ..... Vascular discoloration and stem necrosis. 2.

Lamb Wave Damage Quantification Using GA-Based LS-SVM

Directory of Open Access Journals (Sweden)

Fuqiang Sun

2017-06-01

Full Text Available Lamb waves have been reported to be an efficient tool for non-destructive evaluations (NDE for various application scenarios. However, accurate and reliable damage quantification using the Lamb wave method is still a practical challenge, due to the complex underlying mechanism of Lamb wave propagation and damage detection. This paper presents a Lamb wave damage quantification method using a least square support vector machine (LS-SVM and a genetic algorithm (GA. Three damage sensitive features, namely, normalized amplitude, phase change, and correlation coefficient, were proposed to describe changes of Lamb wave characteristics caused by damage. In view of commonly used data-driven methods, the GA-based LS-SVM model using the proposed three damage sensitive features was implemented to evaluate the crack size. The GA method was adopted to optimize the model parameters. The results of GA-based LS-SVM were validated using coupon test data and lap joint component test data with naturally developed fatigue cracks. Cases of different loading and manufacturer were also included to further verify the robustness of the proposed method for crack quantification.

Lamb Wave Damage Quantification Using GA-Based LS-SVM.

Science.gov (United States)

Sun, Fuqiang; Wang, Ning; He, Jingjing; Guan, Xuefei; Yang, Jinsong

2017-06-12

Lamb waves have been reported to be an efficient tool for non-destructive evaluations (NDE) for various application scenarios. However, accurate and reliable damage quantification using the Lamb wave method is still a practical challenge, due to the complex underlying mechanism of Lamb wave propagation and damage detection. This paper presents a Lamb wave damage quantification method using a least square support vector machine (LS-SVM) and a genetic algorithm (GA). Three damage sensitive features, namely, normalized amplitude, phase change, and correlation coefficient, were proposed to describe changes of Lamb wave characteristics caused by damage. In view of commonly used data-driven methods, the GA-based LS-SVM model using the proposed three damage sensitive features was implemented to evaluate the crack size. The GA method was adopted to optimize the model parameters. The results of GA-based LS-SVM were validated using coupon test data and lap joint component test data with naturally developed fatigue cracks. Cases of different loading and manufacturer were also included to further verify the robustness of the proposed method for crack quantification.

[DNA quantification of blood samples pre-treated with pyramidon].

Science.gov (United States)

Zhu, Chuan-Hong; Zheng, Dao-Li; Ni, Rao-Zhi; Wang, Hai-Sheng; Ning, Ping; Fang, Hui; Liu, Yan

2014-06-01

To study DNA quantification and STR typing of samples pre-treated with pyramidon. The blood samples of ten unrelated individuals were anticoagulated in EDTA. The blood stains were made on the filter paper. The experimental groups were divided into six groups in accordance with the storage time, 30 min, 1 h, 3 h, 6 h, 12 h and 24h after pre-treated with pyramidon. DNA was extracted by three methods: magnetic bead-based extraction, QIAcube DNA purification method and Chelex-100 method. The quantification of DNA was made by fluorescent quantitative PCR. STR typing was detected by PCR-STR fluorescent technology. In the same DNA extraction method, the sample DNA decreased gradually with times after pre-treatment with pyramidon. In the same storage time, the DNA quantification in different extraction methods had significant differences. Sixteen loci DNA typing were detected in 90.56% of samples. Pyramidon pre-treatment could cause DNA degradation, but effective STR typing can be achieved within 24 h. The magnetic bead-based extraction is the best method for STR profiling and DNA extraction.

Preliminary Magnitude of Completeness Quantification of Improved BMKG Catalog (2008-2016) in Indonesian Region

Science.gov (United States)

Diantari, H. C.; Suryanto, W.; Anggraini, A.; Irnaka, T. M.; Susilanto, P.; Ngadmanto, D.

2018-03-01

We present a magnitude of completeness (Mc) quantification based on BMKG improved earthquake catalog which generated from Ina-TEWS seismograph network. The Mc quantification can help us determine the lowest magnitude which can be recorded perfectly as a function of space and time. We use the BMKG improved earthquake catalog from 2008 to 2016 which has been converted to moment magnitude (Mw) and declustered. The value of Mc is computed by determining the initial point of deviation patterns in Frequency Magnitude Distribution (FMD) chart following the Gutenberg-Richter equations. In the next step, we calculate the temporal variation of Mc and b-value using maximum likelihood method annually. We found that the Mc value is decreasing and produced a varying b-value. It indicates that the development of seismograph network from 2008 to 2016 can affect the value of Mc although it is not significant. We analyze temporal variation of Mc value, and correlate it with the spatial distribution of seismograph in Indonesia. The spatial distribution of seismograph installation shows that the western part of Indonesia has more dense seismograph compared to the eastern region. However, the eastern part of Indonesia has a high level of seismicity compared to the western region. Based upon the results, additional seismograph installation in the eastern part of Indonesia should be taken into consideration.

Real-Time PCR Quantification of Chloroplast DNA Supports DNA Barcoding of Plant Species.

Science.gov (United States)

Kikkawa, Hitomi S; Tsuge, Kouichiro; Sugita, Ritsuko

2016-03-01

Species identification from extracted DNA is sometimes needed for botanical samples. DNA quantification is required for an accurate and effective examination. If a quantitative assay provides unreliable estimates, a higher quantity of DNA than the estimated amount may be used in additional analyses to avoid failure to analyze samples from which extracting DNA is difficult. Compared with conventional methods, real-time quantitative PCR (qPCR) requires a low amount of DNA and enables quantification of dilute DNA solutions accurately. The aim of this study was to develop a qPCR assay for quantification of chloroplast DNA from taxonomically diverse plant species. An absolute quantification method was developed using primers targeting the ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene using SYBR Green I-based qPCR. The calibration curve was generated using the PCR amplicon as the template. DNA extracts from representatives of 13 plant families common in Japan. This demonstrates that qPCR analysis is an effective method for quantification of DNA from plant samples. The results of qPCR assist in the decision-making will determine the success or failure of DNA analysis, indicating the possibility of optimization of the procedure for downstream reactions.

Stereo-particle image velocimetry uncertainty quantification

International Nuclear Information System (INIS)

Bhattacharya, Sayantan; Vlachos, Pavlos P; Charonko, John J

2017-01-01

Particle image velocimetry (PIV) measurements are subject to multiple elemental error sources and thus estimating overall measurement uncertainty is challenging. Recent advances have led to a posteriori uncertainty estimation methods for planar two-component PIV. However, no complete methodology exists for uncertainty quantification in stereo PIV. In the current work, a comprehensive framework is presented to quantify the uncertainty stemming from stereo registration error and combine it with the underlying planar velocity uncertainties. The disparity in particle locations of the dewarped images is used to estimate the positional uncertainty of the world coordinate system, which is then propagated to the uncertainty in the calibration mapping function coefficients. Next, the calibration uncertainty is combined with the planar uncertainty fields of the individual cameras through an uncertainty propagation equation and uncertainty estimates are obtained for all three velocity components. The methodology was tested with synthetic stereo PIV data for different light sheet thicknesses, with and without registration error, and also validated with an experimental vortex ring case from 2014 PIV challenge. Thorough sensitivity analysis was performed to assess the relative impact of the various parameters to the overall uncertainty. The results suggest that in absence of any disparity, the stereo PIV uncertainty prediction method is more sensitive to the planar uncertainty estimates than to the angle uncertainty, although the latter is not negligible for non-zero disparity. Overall the presented uncertainty quantification framework showed excellent agreement between the error and uncertainty RMS values for both the synthetic and the experimental data and demonstrated reliable uncertainty prediction coverage. This stereo PIV uncertainty quantification framework provides the first comprehensive treatment on the subject and potentially lays foundations applicable to volumetric

Naphthalene: Drinking water health advisory

Energy Technology Data Exchange (ETDEWEB)

1990-03-01

The Drinking Water Health Advisory, Office of Water, U.S. Environmental Protection Agency, has issued its report on the chemical, naphthalene. Naphthalene is used in the manufacture of phthalic and anthranilic acids and other derivatives, and in making dyes; in the manufacture of resins, celluloid, lampblack and smokeless gunpowder; and as moth repellant, insecticide, anthelmintic, vermicide, and intestinal antiseptic. The report covers the following areas: the occurrence of the chemical in the environment; its environmental fate; the chemical's absorption, distribution, metabolism, and excretion in the human body; and its health effects on humans and animals, including its mutagenicity and carcinogenicity characteristics. Also included is the quantification of its toxicological effects.

Absolute and direct microRNA quantification using DNA-gold nanoparticle probes.

Science.gov (United States)

Degliangeli, Federica; Kshirsagar, Prakash; Brunetti, Virgilio; Pompa, Pier Paolo; Fiammengo, Roberto

2014-02-12

DNA-gold nanoparticle probes are implemented in a simple strategy for direct microRNA (miRNA) quantification. Fluorescently labeled DNA-probe strands are immobilized on PEGylated gold nanoparticles (AuNPs). In the presence of target miRNA, DNA-RNA heteroduplexes are formed and become substrate for the endonuclease DSN (duplex-specific nuclease). Enzymatic hydrolysis of the DNA strands yields a fluorescence signal due to diffusion of the fluorophores away from the gold surface. We show that the molecular design of our DNA-AuNP probes, with the DNA strands immobilized on top of the PEG-based passivation layer, results in nearly unaltered enzymatic activity toward immobilized heteroduplexes compared to substrates free in solution. The assay, developed in a real-time format, allows absolute quantification of as little as 0.2 fmol of miR-203. We also show the application of the assay for direct quantification of cancer-related miR-203 and miR-21 in samples of extracted total RNA from cell cultures. The possibility of direct and absolute quantification may significantly advance the use of microRNAs as biomarkers in the clinical praxis.

Activity quantification of phantom using dual-head SPECT with two-view planar image

International Nuclear Information System (INIS)

Guo Leiming; Chen Tao; Sun Xiaoguang; Huang Gang

2005-01-01

The absorbed radiation dose from internally deposited radionuclide is a major factor in assessing risk and therapeutic utility in nuclear medicine diagnosis or treatment. The quantification of absolute activity in vivo is necessary procedure of estimating the absorbed dose of organ or tissue. To understand accuracy in the determination of organ activity, the experiments on 99 Tc m activity quantification were made for a body phantom using dual-heat SPECT with the two-view counting technique. Accuracy in the activity quantification is credible and is not affected by depth of source organ in vivo. When diameter of the radiation source is ≤2 cm, the most accurate activity quantification result can be obtained on the basis of establishing the system calibration factor and transmission factor. The use of Buijs's method is preferable, especially at very low source-to-background activity concentration rations. (authors)

Quantification of wall motion and phase of contraction in tomographic gated blood pool studies using length-based Fourier analysis

Energy Technology Data Exchange (ETDEWEB)

Nakajima, Kenichi; Bunko, Hisashi; Taki, Junichi; Nambu, Ichiro; Shiire, Yasushi; Tonami, Norihisa; Hisada, Kinichi; Tada, Akira; Kojima, Kazuhkio

1985-03-01

Length-based Fourier analysis, a new method for quantification of wall motion and timing of contraction, was applied to tomographic gated blood pool study. Two parameters, percent-length shortening (%LS) and length-based phase were calculated based on the time-length curves from a center to ventricular edges, and compared with the count-based method. In mathematical models for tomographic gated blood pool images, the severity of asynergy was easily determined by length-based method, and the accuracy of the parameters was good. As to the setting of the center, fixed center provided more reliable parameters than the method using movable center, i.e., when a center of gravity was determined in each frame. By length-based Fourier analysis, quantification of wall motion was easily performed, and the initial inward movement caused by the accessory conduction pathway was assessed in patients with Wolff-Parkinson-White syndrome. Length-based approach was considered to be reasonable and effective because the movements of the ventricular edges are essential in tomographic gated blood pool images.

Quantification of wall motion and phase of contraction in tomographic gated blood pool studies using length-based Fourier analysis

International Nuclear Information System (INIS)

Nakajima, Kenichi; Bunko, Hisashi; Taki, Junichi; Nambu, Ichiro; Shiire, Yasushi; Tonami, Norihisa; Hisada, Kinichi; Tada, Akira; Kojima, Kazuhiko.

1985-01-01

Length-based Fourier analysis, a new method for quantification of wall motion and timing of contraction, was applied to tomographic gated blood pool study. Two parameters, percent-length shortening (%LS) and length-based phase were calculated based on the time-length curves from a center to ventricular edges, and compared with the count-based method. In mathematical models for tomographic gated blood pool images, the severity of asynergy was easily determined by length-based method, and the accuracy of the parameters was good. As to the setting of the center, fixed center provided more reliable parameters than the method using movable center, i.e., when a center of gravity was determined in each frame. By length-based Fourier analysis, quantification of wall motion was easily performed, and the initial inward movement caused by the accessory conduction pathway was assessed in patients with Wolff-Parkinson-White syndrome. Length-based approach was considered to be reasonable and effective because the movements of the ventricular edges are essential in tomographic gated blood pool images. (author)

Improved Strategies and Optimization of Calibration Models for Real-time PCR Absolute Quantification

Science.gov (United States)

Real-time PCR absolute quantification applications rely on the use of standard curves to make estimates of DNA target concentrations in unknown samples. Traditional absolute quantification approaches dictate that a standard curve must accompany each experimental run. However, t...

Quantification of Human and Animal Viruses to Differentiate the Origin of the Fecal Contamination Present in Environmental Samples

Directory of Open Access Journals (Sweden)

Sílvia Bofill-Mas

2013-01-01

Full Text Available Many different viruses are excreted by humans and animals and are frequently detected in fecal contaminated waters causing public health concerns. Classical bacterial indicator such as E. coli and enterococci could fail to predict the risk for waterborne pathogens such as viruses. Moreover, the presence and levels of bacterial indicators do not always correlate with the presence and concentration of viruses, especially when these indicators are present in low concentrations. Our research group has proposed new viral indicators and methodologies for determining the presence of fecal pollution in environmental samples as well as for tracing the origin of this fecal contamination (microbial source tracking. In this paper, we examine to what extent have these indicators been applied by the scientific community. Recently, quantitative assays for quantification of poultry and ovine viruses have also been described. Overall, quantification by qPCR of human adenoviruses and human polyomavirus JC, porcine adenoviruses, bovine polyomaviruses, chicken/turkey parvoviruses, and ovine polyomaviruses is suggested as a toolbox for the identification of human, porcine, bovine, poultry, and ovine fecal pollution in environmental samples.

Quantification of uranyl in presence of citric acid

International Nuclear Information System (INIS)

Garcia G, N.; Barrera D, C.E.; Ordonez R, E.

2007-01-01

To determine the influence that has the organic matter of the soil on the uranyl sorption on some solids is necessary to have a detection technique and quantification of uranyl that it is reliable and sufficiently quick in the obtaining of results. For that in this work, it intends to carry out the uranyl quantification in presence of citric acid modifying the Fluorescence induced by UV-Vis radiation technique. Since the uranyl ion is very sensitive to the medium that contains it, (speciation, pH, ionic forces, etc.) it was necessary to develop an analysis technique that stands out the fluorescence of uranyl ion avoiding the out one that produce the organic acids. (Author)

Automated quantification of renal interstitial fibrosis for computer-aided diagnosis: A comprehensive tissue structure segmentation method.

Science.gov (United States)

Tey, Wei Keat; Kuang, Ye Chow; Ooi, Melanie Po-Leen; Khoo, Joon Joon

2018-03-01

Interstitial fibrosis in renal biopsy samples is a scarring tissue structure that may be visually quantified by pathologists as an indicator to the presence and extent of chronic kidney disease. The standard method of quantification by visual evaluation presents reproducibility issues in the diagnoses. This study proposes an automated quantification system for measuring the amount of interstitial fibrosis in renal biopsy images as a consistent basis of comparison among pathologists. The system extracts and segments the renal tissue structures based on colour information and structural assumptions of the tissue structures. The regions in the biopsy representing the interstitial fibrosis are deduced through the elimination of non-interstitial fibrosis structures from the biopsy area and quantified as a percentage of the total area of the biopsy sample. A ground truth image dataset has been manually prepared by consulting an experienced pathologist for the validation of the segmentation algorithms. The results from experiments involving experienced pathologists have demonstrated a good correlation in quantification result between the automated system and the pathologists' visual evaluation. Experiments investigating the variability in pathologists also proved the automated quantification error rate to be on par with the average intra-observer variability in pathologists' quantification. Interstitial fibrosis in renal biopsy samples is a scarring tissue structure that may be visually quantified by pathologists as an indicator to the presence and extent of chronic kidney disease. The standard method of quantification by visual evaluation presents reproducibility issues in the diagnoses due to the uncertainties in human judgement. An automated quantification system for accurately measuring the amount of interstitial fibrosis in renal biopsy images is presented as a consistent basis of comparison among pathologists. The system identifies the renal tissue structures

Standardless quantification by parameter optimization in electron probe microanalysis

Energy Technology Data Exchange (ETDEWEB)

Limandri, Silvina P. [Instituto de Fisica Enrique Gaviola (IFEG), CONICET (Argentina); Facultad de Matematica, Astronomia y Fisica, Universidad Nacional de Cordoba, Medina Allende s/n, (5016) Cordoba (Argentina); Bonetto, Rita D. [Centro de Investigacion y Desarrollo en Ciencias Aplicadas Dr. Jorge Ronco (CINDECA), CONICET, 47 Street 257, (1900) La Plata (Argentina); Facultad de Ciencias Exactas, Universidad Nacional de La Plata, 1 and 47 Streets (1900) La Plata (Argentina); Josa, Victor Galvan; Carreras, Alejo C. [Instituto de Fisica Enrique Gaviola (IFEG), CONICET (Argentina); Facultad de Matematica, Astronomia y Fisica, Universidad Nacional de Cordoba, Medina Allende s/n, (5016) Cordoba (Argentina); Trincavelli, Jorge C., E-mail: trincavelli@famaf.unc.edu.ar [Instituto de Fisica Enrique Gaviola (IFEG), CONICET (Argentina); Facultad de Matematica, Astronomia y Fisica, Universidad Nacional de Cordoba, Medina Allende s/n, (5016) Cordoba (Argentina)

2012-11-15

A method for standardless quantification by parameter optimization in electron probe microanalysis is presented. The method consists in minimizing the quadratic differences between an experimental spectrum and an analytical function proposed to describe it, by optimizing the parameters involved in the analytical prediction. This algorithm, implemented in the software POEMA (Parameter Optimization in Electron Probe Microanalysis), allows the determination of the elemental concentrations, along with their uncertainties. The method was tested in a set of 159 elemental constituents corresponding to 36 spectra of standards (mostly minerals) that include trace elements. The results were compared with those obtained with the commercial software GENESIS Spectrum Registered-Sign for standardless quantification. The quantifications performed with the method proposed here are better in the 74% of the cases studied. In addition, the performance of the method proposed is compared with the first principles standardless analysis procedure DTSA for a different data set, which excludes trace elements. The relative deviations with respect to the nominal concentrations are lower than 0.04, 0.08 and 0.35 for the 66% of the cases for POEMA, GENESIS and DTSA, respectively. - Highlights: Black-Right-Pointing-Pointer A method for standardless quantification in EPMA is presented. Black-Right-Pointing-Pointer It gives better results than the commercial software GENESIS Spectrum. Black-Right-Pointing-Pointer It gives better results than the software DTSA. Black-Right-Pointing-Pointer It allows the determination of the conductive coating thickness. Black-Right-Pointing-Pointer It gives an estimation for the concentration uncertainties.

Quantification of taurine in energy drinks using ¹H NMR.

Science.gov (United States)

Hohmann, Monika; Felbinger, Christine; Christoph, Norbert; Wachter, Helmut; Wiest, Johannes; Holzgrabe, Ulrike

2014-05-01

The consumption of so called energy drinks is increasing, especially among adolescents. These beverages commonly contain considerable amounts of the amino sulfonic acid taurine, which is related to a magnitude of various physiological effects. The customary method to control the legal limit of taurine in energy drinks is LC-UV/vis with postcolumn derivatization using ninhydrin. In this paper we describe the quantification of taurine in energy drinks by (1)H NMR as an alternative to existing methods of quantification. Variation of pH values revealed the separation of a distinct taurine signal in (1)H NMR spectra, which was applied for integration and quantification. Quantification was performed using external calibration (R(2)>0.9999; linearity verified by Mandel's fitting test with a 95% confidence level) and PULCON. Taurine concentrations in 20 different energy drinks were analyzed by both using (1)H NMR and LC-UV/vis. The deviation between (1)H NMR and LC-UV/vis results was always below the expanded measurement uncertainty of 12.2% for the LC-UV/vis method (95% confidence level) and at worst 10.4%. Due to the high accordance to LC-UV/vis data and adequate recovery rates (ranging between 97.1% and 108.2%), (1)H NMR measurement presents a suitable method to quantify taurine in energy drinks. Copyright © 2013 Elsevier B.V. All rights reserved.

Techniques for quantification of liver fat in risk stratification of diabetics

International Nuclear Information System (INIS)

Kuehn, J.P.; Spoerl, M.C.; Mahlke, C.; Hegenscheid, K.

2015-01-01

Fatty liver disease plays an important role in the development of type 2 diabetes. Accurate techniques for detection and quantification of liver fat are essential for clinical diagnostics. Chemical shift-encoded magnetic resonance imaging (MRI) is a simple approach to quantify liver fat content. Liver fat quantification using chemical shift-encoded MRI is influenced by several bias factors, such as T2* decay, T1 recovery and the multispectral complexity of fat. The confounder corrected proton density fat fraction is a simple approach to quantify liver fat with comparable results independent of the software and hardware used. The proton density fat fraction is an accurate biomarker for assessment of liver fat. An accurate and reproducible quantification of liver fat using chemical shift-encoded MRI requires a calculation of the proton density fat fraction. (orig.) [de

An external standard method for quantification of human cytomegalovirus by PCR

International Nuclear Information System (INIS)

Rongsen, Shen; Liren, Ma; Fengqi, Zhou; Qingliang, Luo

1997-01-01

An external standard method for PCR quantification of HCMV was reported. [α- 32 P]dATP was used as a tracer. 32 P-labelled specific amplification product was separated by agarose gel electrophoresis. A gel piece containing the specific product band was excised and counted in a plastic scintillation counter. Distribution of [α- 32 P]dATP in the electrophoretic gel plate and effect of separation between the 32 P-labelled specific product and free [α- 32 P]dATP were observed. A standard curve for quantification of HCMV by PCR was established and detective results of quality control templets were presented. The external standard method and the electrophoresis separation effect were appraised. The results showed that the method could be used for relative quantification of HCMV. (author)

Initial Screening of Thermochemical Water-Splitting Cycles for High Efficiency Generation of Hydrogen Fuels Using Nuclear Power

International Nuclear Information System (INIS)

Brown, L.C.; Funk, J.F.; Showalter, S.K.

1999-01-01

OAK B188 Initial Screening of Thermochemical Water-Splitting Cycles for High Efficiency Generation of Hydrogen Fuels Using Nuclear Power There is currently no large scale, cost-effective, environmentally attractive hydrogen production process, nor is such a process available for commercialization. Hydrogen is a promising energy carrier, which potentially could replace the fossil fuels used in the transportation sector of our economy. Fossil fuels are polluting and carbon dioxide emissions from their combustion are thought to be responsible for global warming. The purpose of this work is to determine the potential for efficient, cost-effective, large-scale production of hydrogen utilizing high temperature heat from an advanced nuclear power station. Almost 800 literature references were located which pertain to thermochemical production of hydrogen from water and over 100 thermochemical watersplitting cycles were examined. Using defined criteria and quantifiable metrics, 25 cycles have been selected for more detailed study

Neutron radiography and X-ray computed tomography for quantifying weathering and water uptake processes inside porous limestone used as building material

International Nuclear Information System (INIS)

Dewanckele, J.; De Kock, T.; Fronteau, G.; Derluyn, H.; Vontobel, P.; Dierick, M.; Van Hoorebeke, L.; Jacobs, P.; Cnudde, V.

2014-01-01

Euville and Savonnières limestones were weathered by acid test and this resulted in the formation of a gypsum crust. In order to characterize the crystallization pattern and the evolution of the pore structure below the crust, a combination of high resolution X-ray computed tomography and SEM–EDS was used. A time lapse sequence of the changing pore structure in both stones was obtained and afterwards quantified by using image analysis. The difference in weathering of both stones by the same process could be explained by the underlying microstructure and texture. Because water and moisture play a crucial role in the weathering processes, water uptake in weathered and non-weathered samples was characterized based on neutron radiography. In this way the water uptake was both visualized and quantified in function of the height of the sample and in function of time. In general, the formation of a gypsum crust on limestone slows down the initial water uptake in the materials. - Highlights: • Time lapse sequence in 3D of changing pore structures inside limestone • A combination of X-ray CT, SEM and neutron radiography was used. • Quantification of water content in function of time, height and weathering • Characterization of weathering processes due to gypsum crystallization

Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4.

Science.gov (United States)

Vafabakhsh, Reza; Kondabagil, Kiran; Earnest, Tyler; Lee, Kyung Suk; Zhang, Zhihong; Dai, Li; Dahmen, Karin A; Rao, Venigalla B; Ha, Taekjip

2014-10-21

Viral DNA packaging motors are among the most powerful molecular motors known. A variety of structural, biochemical, and single-molecule biophysical approaches have been used to understand their mechanochemistry. However, packaging initiation has been difficult to analyze because of its transient and highly dynamic nature. Here, we developed a single-molecule fluorescence assay that allowed visualization of packaging initiation and reinitiation in real time and quantification of motor assembly and initiation kinetics. We observed that a single bacteriophage T4 packaging machine can package multiple DNA molecules in bursts of activity separated by long pauses, suggesting that it switches between active and quiescent states. Multiple initiation pathways were discovered including, unexpectedly, direct DNA binding to the capsid portal followed by recruitment of motor subunits. Rapid succession of ATP hydrolysis was essential for efficient initiation. These observations have implications for the evolution of icosahedral viruses and regulation of virus assembly.

New methodology in life cycle impact assessment (LCIA) of waste water treatment

DEFF Research Database (Denmark)

Larsen, Henrik Fred; Wenzel, Henrik; Hauschild, Michael Zwicky

chose among different waste water treatments? Which ones are most beneficial in a holistic perspective? Here, the life cycle assessment (LCA) approach as a decision supporting tool may help because its goal is to allow quantification and direct comparison of characteristics as diverse as energy...

Quantification of 18F-florbetapir PET: comparison of two analysis methods

International Nuclear Information System (INIS)

Hutton, Chloe; Declerck, Jerome; Mintun, Mark A.; Pontecorvo, Michael J.; Devous, Michael D.; Joshi, Abhinay D.

2015-01-01

18 F-Florbetapir positron emission tomography (PET) can be used to image amyloid burden in the human brain. A previously developed research method has been shown to have a high test-retest reliability and good correlation between standardized uptake value ratio (SUVR) and amyloid burden at autopsy. The goal of this study was to determine how well SUVRs computed using the research method could be reproduced using an automatic quantification method, developed for clinical use. Two methods for the quantitative analysis of 18 F-florbetapir PET were compared in a diverse clinical population of 604 subjects from the Alzheimer's Disease Neuroimaging Initiative (ADNI) and in a group of 74 younger healthy controls (YHC). Cortex to cerebellum SUVRs were calculated using the research method, which is based on SPM, yielding 'research SUVRs', and using syngo.PET Amyloid Plaque, yielding 'sPAP SUVRs'. Mean cortical SUVRs calculated using the two methods for the 678 subjects were correlated (r = 0.99). Linear regression of sPAP SUVRs on research SUVRs was used to convert the research method SUVR threshold for florbetapir positivity of 1.10 to a corresponding threshold of 1.12 for sPAP. Using the corresponding thresholds, categorization of SUVR values were in agreement between research and sPAP SUVRs for 96.3 % of the ADNI images. SUVRs for all YHC were below the corresponding thresholds. Automatic florbetapir PET quantification using sPAP yielded cortex to cerebellum SUVRs which were correlated and in good agreement with the well-established research method. The research SUVR threshold for florbetapir positivity was reliably converted to a corresponding threshold for sPAP SUVRs. (orig.)

Radiolytic oxidation of UO{sub 2} pellets doped with alpha-emitters ({sup 238/239}Pu)

Energy Technology Data Exchange (ETDEWEB)

Muzeau, B. [Commissariat a l' Energie Atomique, Rhone Valley Research Center DTCD/SECM/LMPA, BP 17 171, 30207 Bagnols-sur-Ceze Cedex (France); Jegou, C. [Commissariat a l' Energie Atomique, Rhone Valley Research Center DTCD/SECM/LMPA, BP 17 171, 30207 Bagnols-sur-Ceze Cedex (France)], E-mail: christophe.jegou@cea.fr; Delaunay, F. [Commissariat a l' Energie Atomique, Valduc Research Center, 21120 Is-sur-Tille (France); Broudic, V. [Commissariat a l' Energie Atomique, Rhone Valley Research Center DTCD/SECM/LMPA, BP 17 171, 30207 Bagnols-sur-Ceze Cedex (France); Brevet, A. [Commissariat a l' Energie Atomique, Valduc Research Center, 21120 Is-sur-Tille (France); Catalette, H. [Electricite de France, Les Renardieres Research Center, Route de Sens Ecuelles, 77250 Moret-sur-Loing (France); Simoni, E. [Institut de Physique Nucleaire, Bat. 100, 91406 Orsay Cedex (France); Corbel, C. [Laboratoire des Solides Irradies, UMR 7642-CNRS-CEA-Ecole Polytechnique, Ecole Polytechnique, 91128 Palaiseau Cedex (France)

2009-01-07

To assess the impact of alpha radiolysis of water on the oxidative dissolution of UO{sub 2} under anoxic conditions, two series of plutonium-doped samples (specific alpha activity 385 and 18 MBqg{sub UO{sub 2}}{sup -1}) were fabricated, characterized and leached in water of varying complexity (pure water, carbonated water, dissolved hydrogen). Given the very high reactivity of these samples in the presence of air and in order to minimize any prior surface oxidation, a strict experimental protocol was developed based on high-temperature annealing in Ar + 4% H{sub 2} with preleaching cycles. Failure to follow this protocol prevents absolute quantification of oxidation of the UO{sub 2} surface by water radiolysis in solutions. Preoxidation of the pellet surface can lead to uranium release in solution that is dependent on the alpha particle flux, revealing initial oxidation by radiolysis in air including potential traces of water. This makes difficult the accurate quantification of the radiolytic oxidation in water solutions. Controlling the initial surface condition of the samples finally allowed us to demonstrate that radiolytic oxidation in water-saturated media is governed by several threshold effects for which the main parameters are the sample alpha activity and the hydrogen concentration.

Initial electron energy spectra in water irradiated by photons with energies to 1 GeV

International Nuclear Information System (INIS)

Todo, A.S.; Hiromoto, G.; Turner, J.E.; Hamm, R.N.; Wright, H.A.

1984-02-01

This work was undertaken to provide basic physical data for use in the dosimetry of high-energy photons. Present and future sources of such photons are described, and the relevant literature is reviewed and summarized. Calculations were performed with a Monte Carlo computer code, PHOEL-3, which is also described. Tables of initial electron and positron energies are presented for monoenergetic photons undergoing single interactions in water. Photon energies to 1 GeV are treated. The code treats explicitly the production of electron-positron pairs, Compton scattering, photoelectric absorption, and the emission of Auger electrons following the occurrence of K-shell vacancies in oxygen. The tables give directly the information needed to specify the absolute single-collision kerma in water, which approximates tissue, at each photon energy. Results for continuous photon energy spectra can be obtained by using linear interpolation with the tables. (Continuous spectra can also be used directly in PHOEL-3.) The conditions under whch first-collision kerma approximate absorbed dose are discussed. A formula is given for estimating bremsstrahlung energy loss, one of the principal differences between kerma and absorbed dose in practical cases. 31 references, 4 figures, 18 tables

MR Spectroscopy: Real-Time Quantification of in-vivo MR Spectroscopic data