A High-resolution Atlas and Statistical Model of the Vocal Tract from Structural MRI.

Science.gov (United States)

Woo, Jonghye; Lee, Junghoon; Murano, Emi Z; Xing, Fangxu; Al-Talib, Meena; Stone, Maureen; Prince, Jerry L

Magnetic resonance imaging (MRI) is an essential tool in the study of muscle anatomy and functional activity in the tongue. Objective assessment of similarities and differences in tongue structure and function has been performed using unnormalized data, but this is biased by the differences in size, shape, and orientation of the structures. To remedy this, we propose a methodology to build a 3D vocal tract atlas based on structural MRI volumes from twenty normal subjects. We first constructed high-resolution volumes from three orthogonal stacks. We then removed extraneous data so that all 3D volumes contained the same anatomy. We used an unbiased diffeomorphic groupwise registration using a cross-correlation similarity metric. Principal component analysis was applied to the deformation fields to create a statistical model from the atlas. Various evaluations and applications were carried out to show the behaviour and utility of the atlas.

Feasibility of creating a high-resolution 3D diffusion tensor imaging based atlas of the human brainstem: a case study at 11.7 T.

Science.gov (United States)

Aggarwal, Manisha; Zhang, Jiangyang; Pletnikova, Olga; Crain, Barbara; Troncoso, Juan; Mori, Susumu

2013-07-01

A three-dimensional stereotaxic atlas of the human brainstem based on high resolution ex vivo diffusion tensor imaging (DTI) is introduced. The atlas consists of high resolution (125-255 μm isotropic) three-dimensional DT images of the formalin-fixed brainstem acquired at 11.7 T. The DTI data revealed microscopic neuroanatomical details, allowing three-dimensional visualization and reconstruction of fiber pathways including the decussation of the pyramidal tract fibers, and interdigitating fascicles of the corticospinal and transverse pontine fibers. Additionally, strong gray-white matter contrasts in the apparent diffusion coefficient (ADC) maps enabled precise delineation of gray matter nuclei in the brainstem, including the cranial nerve and the inferior olivary nuclei. Comparison with myelin-stained histology shows that at the level of resolution achieved in this study, the structural details resolved with DTI contrasts in the brainstem were comparable to anatomical delineation obtained with histological sectioning. Major neural structures delineated from DTI contrasts in the brainstem are segmented and three-dimensionally reconstructed. Further, the ex vivo DTI data are nonlinearly mapped to a widely-used in vivo human brain atlas, to construct a high-resolution atlas of the brainstem in the Montreal Neurological Institute (MNI) stereotaxic coordinate space. The results demonstrate the feasibility of developing a 3D DTI based atlas for detailed characterization of brainstem neuroanatomy with high resolution and contrasts, which will be a useful resource for research and clinical applications. Copyright © 2013 Elsevier Inc. All rights reserved.

High temperature and high resolution uv photoelectron spectroscopy using supersonic molecular beams

International Nuclear Information System (INIS)

Wang, Lai-Sheng; Reutt-Robey, J.E.; Niu, B.; Lee, Y.T.; Shirley, D.A.

1989-07-01

A high temperature molecular beam source with electron bombardment heating has been built for high resolution photoelectron spectroscopic studies of high temperature species and clusters. This source has the advantages of: producing an intense, continuous, seeded molecular beam, eliminating the interference of the heating mechanism from the photoelectron measurement. Coupling the source with our hemispherical electron energy analyzer, we can obtain very high resolution HeIα (584 angstrom) photoelectron spectra of high temperature species. Vibrationally-resolved photoelectron spectra of PbSe, As 2 , As 4 , and ZnCl 2 are shown to demonstrate the performance of the new source. 25 refs., 8 figs., 1 tab

ANL high resolution injector

International Nuclear Information System (INIS)

Minehara, E.; Kutschera, W.; Hartog, P.D.; Billquist, P.

1985-01-01

The ANL (Argonne National Laboratory) high-resolution injector has been installed to obtain higher mass resolution and higher preacceleration, and to utilize effectively the full mass range of ATLAS (Argonne Tandem Linac Accelerator System). Preliminary results of the first beam test are reported briefly. The design and performance, in particular a high-mass-resolution magnet with aberration compensation, are discussed. 7 refs., 5 figs., 2 tabs

A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI

DEFF Research Database (Denmark)

Iglesias, Juan Eugenio; Augustinack, Jean C.; Nguyen, Khoa

2015-01-01

level using ultra-high resolution, ex vivo MRI. Fifteen autopsy samples were scanned at 0.13 mm isotropic resolution (on average) using customized hardware. The images were manually segmented into 13 different hippocampal substructures using a protocol specifically designed for this study; precise...... datasets with different types of MRI contrast. The results show that the atlas and companion segmentation method: 1) can segment T1 and T2 images, as well as their combination, 2) replicate findings on mild cognitive impairment based on high-resolution T2 data, and 3) can discriminate between Alzheimer......'s disease subjects and elderly controls with 88% accuracy in standard resolution (1 mm) T1 data, significantly outperforming the atlas in FreeSurfer version 5.3 (86% accuracy) and classification based on whole hippocampal volume (82% accuracy)....

Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space.

Science.gov (United States)

Feng, Lei; Jeon, Tina; Yu, Qiaowen; Ouyang, Minhui; Peng, Qinmu; Mishra, Virendra; Pletikos, Mihovil; Sestan, Nenad; Miller, Michael I; Mori, Susumu; Hsiao, Steven; Liu, Shuwei; Huang, Hao

2017-12-01

Animal models of the rhesus macaque (Macaca mulatta), the most widely used nonhuman primate, have been irreplaceable in neurobiological studies. However, a population-averaged macaque brain diffusion tensor imaging (DTI) atlas, including comprehensive gray and white matter labeling as well as bony and facial landmarks guiding invasive experimental procedures, is not available. The macaque white matter tract pathways and microstructures have been rarely recorded. Here, we established a population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space incorporating bony and facial landmarks, and delineated microstructures and three-dimensional pathways of major white matter tracts in vivo MRI/DTI and ex vivo (postmortem) DTI of ten rhesus macaque brains were acquired. Single-subject macaque brain DTI template was obtained by transforming the postmortem high-resolution DTI data into in vivo space. Ex vivo DTI of ten macaque brains was then averaged in the in vivo single-subject template space to generate population-averaged macaque brain DTI atlas. The white matter tracts were traced with DTI-based tractography. One hundred and eighteen neural structures including all cortical gyri, white matter tracts and subcortical nuclei, were labeled manually on population-averaged DTI-derived maps. The in vivo microstructural metrics of fractional anisotropy, axial, radial and mean diffusivity of the traced white matter tracts were measured. Population-averaged digital atlas integrated into in vivo space can be used to label the experimental macaque brain automatically. Bony and facial landmarks will be available for guiding invasive procedures. The DTI metric measurements offer unique insights into heterogeneous microstructural profiles of different white matter tracts.

Concept of a Stand-Alone Muon Trigger with High Transverse Momentum Resolution for the ATLAS Detector at the High-Luminosity LHC

CERN Document Server

Horii, Yasuyuki; The ATLAS collaboration

2014-01-01

The ATLAS trigger uses a three-level trigger system. The level-1 (L1) trigger for muons with high transverse momentum pT in ATLAS is based on fast chambers with excellent time resolution which are able to identify muons coming from a particular beam crossing. These trigger chambers also provide a fast measurement of the muon transverse momenta, however with limited accuracy caused by the moderate spatial resolution along the deflecting direction of the magnetic field. The higher luminosity foreseen for Phase-II puts stringent limits on the L1 trigger rates. A way to control these rates is the improvement of the spatial resolution of the triggering device which drastically sharpens the turn-on curve of the L1 trigger. To do this, the precision tracking chambers (MDT) can be used in the L1 trigger, if the corresponding trigger latency is increased as planned. The trigger rate reduction is accomplished by strongly decreasing the rate of triggers from muons with pT lower than a predefined threshold (typically 20 ...

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.

Science.gov (United States)

Sameith, Katrin; Amini, Saman; Groot Koerkamp, Marian J A; van Leenen, Dik; Brok, Mariel; Brabers, Nathalie; Lijnzaad, Philip; van Hooff, Sander R; Benschop, Joris J; Lenstra, Tineke L; Apweiler, Eva; van Wageningen, Sake; Snel, Berend; Holstege, Frank C P; Kemmeren, Patrick

2015-12-23

Genetic interactions, or non-additive effects between genes, play a crucial role in many cellular processes and disease. Which mechanisms underlie these genetic interactions has hardly been characterized. Understanding the molecular basis of genetic interactions is crucial in deciphering pathway organization and understanding the relationship between genotype, phenotype and disease. To investigate the nature of genetic interactions between gene-specific transcription factors (GSTFs) in Saccharomyces cerevisiae, we systematically analyzed 72 GSTF pairs by gene expression profiling double and single deletion mutants. These pairs were selected through previously published growth-based genetic interactions as well as through similarity in DNA binding properties. The result is a high-resolution atlas of gene expression-based genetic interactions that provides systems-level insight into GSTF epistasis. The atlas confirms known genetic interactions and exposes new ones. Importantly, the data can be used to investigate mechanisms that underlie individual genetic interactions. Two molecular mechanisms are proposed, "buffering by induced dependency" and "alleviation by derepression". These mechanisms indicate how negative genetic interactions can occur between seemingly unrelated parallel pathways and how positive genetic interactions can indirectly expose parallel rather than same-pathway relationships. The focus on GSTFs is important for understanding the transcription regulatory network of yeast as it uncovers details behind many redundancy relationships, some of which are completely new. In addition, the study provides general insight into the complex nature of epistasis and proposes mechanistic models for genetic interactions, the majority of which do not fall into easily recognizable within- or between-pathway relationships.

Resolution and Efficiency of the ATLAS Muon Drift-Tube Chambers at High Background Rates

CERN Document Server

Deile, M.; Horvat, S.; Kortner, O.; Kroha, H.; Manz, A.; Mohrdieck-Mock, S.; Rauscher, F.; Richter, Robert; Staude, A.; Stiller, W.

2016-01-01

The resolution and efficiency of a precision drift-tube chamber for the ATLAS muon spectrometer with final read-out electronics was tested at the Gamma Irradiation Facility at CERN in a 100 GeV muon beam and at photon irradiation rates of up to 990 Hz/square cm which corresponds to twice the highest background rate expected in ATLAS. A silicon strip detector telescope was used as external reference in the beam. The pulse-height measurement of the read-out electronics was used to perform time-slewing corrections which lead to an improvement of the average drift-tube resolution from 104 microns to 82 microns without irradiation and from 128 microns to 108 microns at the maximum expected rate. The measured drift-tube efficiency agrees with the expectation from the dead time of the read-out electronics up to the maximum expected rate.

Jet energy resolution in proton-proton collisions at √s = 7 TeV recorded in 2010 with the ATLAS detector

Czech Academy of Sciences Publication Activity Database

Aad, G.; Abajyan, T.; Abbott, B.; Böhm, Jan; Chudoba, Jiří; Gallus, Petr; Gunther, Jaroslav; Jakoubek, Tomáš; Juránek, Vojtěch; Kepka, Oldřich; Kupčo, Alexander; Kůs, Vlastimil; Lokajíček, Miloš; Marčišovský, Michal; Mikeštíková, Marcela; Myška, Miroslav; Němeček, Stanislav; Růžička, Pavel; Schovancová, Jaroslava; Šícho, Petr; Staroba, Pavel; Svatoš, Michal; Taševský, Marek; Tic, Tomáš; Valenta, J.; Vrba, Václav; Zeman, Martin

2013-01-01

Roč. 73, č. 3 (2013), s. 1-13 ISSN 1434-6044 R&D Projects: GA MŠk LA08032 Institutional support: RVO:68378271 Keywords : energy resolution * scattering * energy * calibration * energy resolution * measured * numerical calculations * Monte Carlo * ATLAS * calorimeter Subject RIV: BG - Nuclear, Atomic and Molecular Physics, Colliders Impact factor: 5.436, year: 2013

A HIGH-RESOLUTION, MULTI-EPOCH SPECTRAL ATLAS OF PECULIAR STARS INCLUDING RAVE, GAIA , AND HERMES WAVELENGTH RANGES

International Nuclear Information System (INIS)

Tomasella, Lina; Munari, Ulisse; Zwitter, Tomaz

2010-01-01

We present an Echelle+CCD, high signal-to-noise ratio, high-resolution (R = 20,000) spectroscopic atlas of 108 well-known objects representative of the most common types of peculiar and variable stars. The wavelength interval extends from 4600 to 9400 A and includes the RAVE, Gaia, and HERMES wavelength ranges. Multi-epoch spectra are provided for the majority of the observed stars. A total of 425 spectra of peculiar stars, which were collected during 56 observing nights between 1998 November and 2002 August, are presented. The spectra are given in FITS format and heliocentric wavelengths, with accurate subtraction of both the sky background and the scattered light. Auxiliary material useful for custom applications (telluric dividers, spectrophotometric stars, flat-field tracings) is also provided. The atlas aims to provide a homogeneous database of the spectral appearance of stellar peculiarities, a tool useful both for classification purposes and inter-comparison studies. It could also serve in the planning and development of automated classification algorithms designed for RAVE, Gaia, HERMES, and other large-scale spectral surveys. The spectrum of XX Oph is discussed in some detail as an example of the content of the present atlas.

High Resolution Urban Land Cover Mapping Using NAIP Aerial Photography and Image Processing for the USEPA National Atlas of Sustainability and Ecosystem Services

Science.gov (United States)

Pilant, A. N.; Baynes, J.; Dannenberg, M.

2012-12-01

The US EPA National Atlas for Sustainability is a web-based, easy-to-use, mapping application that allows users to view and analyze multiple ecosystem services in a specific region. The Atlas provides users with a visual method for interpreting ecosystem services and understanding how they can be conserved and enhanced for a sustainable future. The Urban Atlas component of the National Atlas will provide fine-scale information linking human health and well-being to environmental conditions such as urban heat islands, near-road pollution, resource use, access to recreation, drinking water quality and other quality of life indicators. The National Land Cover Data (NLCD) derived from 30 m scale 2006 Landsat imagery provides the land cover base for the Atlas. However, urban features and phenomena occur at finer spatial scales, so higher spatial resolution and more current LC maps are required. We used 4 band USDA NAIP imagery (1 m pixel size) and various classification approaches to produce urban land cover maps with these classes: impervious surface, grass and herbaceous, trees and forest, soil and barren, and water. Here we present the remote sensing methods used and results from four pilot cities in this effort, highlighting the pros and cons of the approach, and the benefits to sustainability and ecosystem services analysis. Example of high resolution land cover map derived from USDA NAIP aerial photo. Compare 30 m and 1 m resolution land cover maps of downtown Durham, NC.

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Science.gov (United States)

Clark, Emily L; Bush, Stephen J; McCulloch, Mary E B; Farquhar, Iseabail L; Young, Rachel; Lefevre, Lucas; Pridans, Clare; Tsang, Hiu G; Wu, Chunlei; Afrasiabi, Cyrus; Watson, Mick; Whitelaw, C Bruce; Freeman, Tom C; Summers, Kim M; Archibald, Alan L; Hume, David A

2017-09-01

Sheep are a key source of meat, milk and fibre for the global livestock sector, and an important biomedical model. Global analysis of gene expression across multiple tissues has aided genome annotation and supported functional annotation of mammalian genes. We present a large-scale RNA-Seq dataset representing all the major organ systems from adult sheep and from several juvenile, neonatal and prenatal developmental time points. The Ovis aries reference genome (Oar v3.1) includes 27,504 genes (20,921 protein coding), of which 25,350 (19,921 protein coding) had detectable expression in at least one tissue in the sheep gene expression atlas dataset. Network-based cluster analysis of this dataset grouped genes according to their expression pattern. The principle of 'guilt by association' was used to infer the function of uncharacterised genes from their co-expression with genes of known function. We describe the overall transcriptional signatures present in the sheep gene expression atlas and assign those signatures, where possible, to specific cell populations or pathways. The findings are related to innate immunity by focusing on clusters with an immune signature, and to the advantages of cross-breeding by examining the patterns of genes exhibiting the greatest expression differences between purebred and crossbred animals. This high-resolution gene expression atlas for sheep is, to our knowledge, the largest transcriptomic dataset from any livestock species to date. It provides a resource to improve the annotation of the current reference genome for sheep, presenting a model transcriptome for ruminants and insight into gene, cell and tissue function at multiple developmental stages.

Computation of a high-resolution MRI 3D stereotaxic atlas of the sheep brain.

Science.gov (United States)

Ella, Arsène; Delgadillo, José A; Chemineau, Philippe; Keller, Matthieu

2017-02-15

The sheep model was first used in the fields of animal reproduction and veterinary sciences and then was utilized in fundamental and preclinical studies. For more than a decade, magnetic resonance (MR) studies performed on this model have been increasingly reported, especially in the field of neuroscience. To contribute to MR translational neuroscience research, a brain template and an atlas are necessary. We have recently generated the first complete T1-weighted (T1W) and T2W MR population average images (or templates) of in vivo sheep brains. In this study, we 1) defined a 3D stereotaxic coordinate system for previously established in vivo population average templates; 2) used deformation fields obtained during optimized nonlinear registrations to compute nonlinear tissues or prior probability maps (nlTPMs) of cerebrospinal fluid (CSF), gray matter (GM), and white matter (WM) tissues; 3) delineated 25 external and 28 internal sheep brain structures by segmenting both templates and nlTPMs; and 4) annotated and labeled these structures using an existing histological atlas. We built a quality high-resolution 3D atlas of average in vivo sheep brains linked to a reference stereotaxic space. The atlas and nlTPMs, associated with previously computed T1W and T2W in vivo sheep brain templates and nlTPMs, provide a complete set of imaging space that are able to be imported into other imaging software programs and could be used as standardized tools for neuroimaging studies or other neuroscience methods, such as image registration, image segmentation, identification of brain structures, implementation of recording devices, or neuronavigation. J. Comp. Neurol. 525:676-692, 2017. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Mechanisms Controlling Hypoxia Data Atlas: High-resolution hydrographic and chemical observations from 2003-2014

Science.gov (United States)

Zimmerle, H.; DiMarco, S. F.

2016-02-01

The Mechanisms Controlling Hypoxia (MCH) project consisted of 31 cruises from 2003-2014 with an objective to investigate the physical and biogeochemical processes that control the hypoxic zone on the Texas-Louisiana shelf in the northern Gulf of Mexico. The known seasonal low oxygen conditions in this region are the result of river-derived nutrients, freshwater input, and wind. The MCH Data Atlas showcases in situ data and subsequent products produced during the duration of the project, focusing on oceanographic observations from 2010-2014. The Atlas features 230 high-resolution vertical sections from nine cruises using the Acrobat undulating towed vehicle that contained a CTD along with sensors measuring oxygen, fluorescence, and turbidity. Vertical profiles along the 20-meter isobaths section feature temperature, salinity, chlorophyll, and dissolved oxygen from the Acrobat towfish and CTD rosette as well as separate selected profiles from the CTD. Surface planview maps show the horizontal distribution of temperature, salinity, chlorophyll, beam transmission, and CDOM observed by the shipboard flow-through system. Bottom planview maps present the horizontal distribution of dissolved oxygen as well as temperature and salinity from the CTD rosette and Acrobat towfish along the shelf's seafloor. Informational basemaps display the GPS cruise track as well as individual CTD stations for each cruise. The shelf concentrations of CTD rosette bottle nutrients, including nitrate, nitrite, phosphate, ammonia, and silicate are displayed in select plots. Shipboard ADCP current velocity fields are also represented. MCH datasets and additional products are featured as an electronic version to compliment the published atlas. The MCH Data Atlas provides a showcase for the spatial and temporal variability of the environmental parameters associated with the annual hypoxic event and will be a useful tool in the continued monitoring and assessment of Gulf coastal hypoxia.

ALTIROC0, a 20 pico-second time resolution ASIC for the ATLAS High Granularity Timing Detector (HGTD)

CERN Document Server

de la Taille, C.; Conforti, S.; Dinaucourt, P.; Martin-Chassard, G.; Seguin-Moreau, N.; Agapopoulou, C.; Makovec, N.; Serin, L.; Simion, S.

2018-01-01

ALTIROC0 is an 8-channel ASIC prototype designed to readout 1x1 or 2x2 mm^2 50 µm thick Low Gain Avalanche Diodes (LGAD) of the ATLAS High Granularity Timing Detector (HGTD). The targeted combined time resolution of the sensor and the readout electronics is 30 ps for one MIP. Each analog channel of the ASIC must exhibit an extremely low jitter to ensure this challenging time resolution, while keeping a low power consumption of 2 mW/channel. A “Time Over Threshold” and a “Constant Fraction Discriminator” architecture are integrated to correct for the time walk. Test bench measurements performed on the ASIC received in April 2017 are presented.

A full-sky, high-resolution atlas of galactic 12 μm dust emission with WISE

International Nuclear Information System (INIS)

Meisner, Aaron M.; Finkbeiner, Douglas P.

2014-01-01

We describe our custom processing of the entire Wide-field Infrared Survey Explorer (WISE) 12 μm imaging data set, and present a high-resolution, full-sky map of diffuse Galactic dust emission that is free of compact sources and other contaminating artifacts. The principal distinctions between our resulting co-added images and the WISE Atlas stacks are our removal of compact sources, including their associated electronic and optical artifacts, and our preservation of spatial modes larger than 1.°5. We provide access to the resulting full-sky map via a set of 430 12.°5 × 12.°5 mosaics. These stacks have been smoothed to 15'' resolution and are accompanied by corresponding coverage maps, artifact images, and bit-masks for point sources, resolved compact sources, and other defects. When combined appropriately with other mid-infrared and far-infrared data sets, we expect our WISE 12 μm co-adds to form the basis for a full-sky dust extinction map with angular resolution several times better than Schlegel et al.

Free radicals. High-resolution spectroscopy and molecular structure

International Nuclear Information System (INIS)

Hirota, E.

1983-01-01

High-resolution, high-sensitivity spectroscopy using CW laser and microwave sources has been applied to free radicals and transient molecules to establish their existence and to explore their properties in detail. The radicals studied were mainly generated by discharge-induced reactions. A few molecules are used as typical examples to illustrate the results so far obtained. The molecular and electronic structures of free radicals, intramolecular motions of large amplitudes in some labile molecules, and metastable electronic states of carbenes are given special emphasis. The significance of the present spectroscopic results in other related fields such as astronomy and atmospheric chemistry is stressed. 4 figures, 3 tables

A novel high resolution, high sensitivity SPECT detector for molecular imaging of cardiovascular diseases

Science.gov (United States)

Cusanno, F.; Argentieri, A.; Baiocchi, M.; Colilli, S.; Cisbani, E.; De Vincentis, G.; Fratoni, R.; Garibaldi, F.; Giuliani, F.; Gricia, M.; Lucentini, M.; Magliozzi, M. L.; Majewski, S.; Marano, G.; Musico, P.; Musumeci, M.; Santavenere, F.; Torrioli, S.; Tsui, B. M. W.; Vitelli, L.; Wang, Y.

2010-05-01

Cardiovascular diseases are the most common cause of death in western countries. Understanding the rupture of vulnerable atherosclerotic plaques and monitoring the effect of innovative therapies of heart failure is of fundamental importance. A flexible, high resolution, high sensitivity detector system for molecular imaging with radionuclides on small animal models has been designed for this aim. A prototype has been built using tungsten pinhole and LaBr3(Ce) scintillator coupled to Hamamatsu Flat Panel PMTs. Compact individual-channel readout has been designed, built and tested. Measurements with phantoms as well as pilot studies on mice have been performed, the results show that the myocardial perfusion in mice can be determined with sufficient precision. The detector will be improved replacing the Hamamatsu Flat Panel with Silicon Photomultipliers (SiPMs) to allow integration of the system with MRI scanners. Application of LaBr3(Ce) scintillator coupled to photosensor with high photon detection efficiency and excellent energy resolution will allow dual-label imaging to monitor simultaneously the cardiac perfusion and the molecular targets under investigation during the heart therapy.

Performance of a First-Level Muon Trigger with High Momentum Resolution Based on the ATLAS MDT Chambers for HL-LHC

CERN Document Server

Gadow, P.; Kortner, S.; Kroha, H.; Müller, F.; Richter, R.

2016-01-01

Highly selective first-level triggers are essential to exploit the full physics potential of the ATLAS experiment at High-Luminosity LHC (HL-LHC). The concept for a new muon trigger stage using the precision monitored drift tube (MDT) chambers to significantly improve the selectivity of the first-level muon trigger is presented. It is based on fast track reconstruction in all three layers of the existing MDT chambers, made possible by an extension of the first-level trigger latency to six microseconds and a new MDT read-out electronics required for the higher overall trigger rates at the HL-LHC. Data from $pp$-collisions at $\\sqrt{s} = 8\\,\\mathrm{TeV}$ is used to study the minimal muon transverse momentum resolution that can be obtained using the MDT precision chambers, and to estimate the resolution and efficiency of the MDT-based trigger. A resolution of better than $4.1\\%$ is found in all sectors under study. With this resolution, a first-level trigger with a threshold of $18\\,\\mathrm{GeV}$ becomes fully e...

Development of a highly selective muon trigger exploiting the high spatial resolution of monitored drift-tube chambers for the ATLAS experiment at the HL-LHC

CERN Document Server

Kortner, Oliver; The ATLAS collaboration

2018-01-01

The High-Luminosity LHC will provide the unique opportunity to explore the nature of physics beyond the Standard Model. Highly selective first level triggers are essential for the physics programme of the ATLAS experiment at the HL-LHC, where the instantaneous luminosity will exceed the LHC design instantaneous luminosity by almost an order of magnitude. The ATLAS first level muon trigger rate is dominated by low momentum muons, selected due to the moderate momentum resolution of the current system. This first level trigger limitation can be overcome by including data from the precision muon drift tube (MDT) chambers. This requires the fast continuous transfer of the MDT hits to the off-detector trigger logic and a fast track reconstruction algorithm performed in the trigger logic. The feasibility of this approach was studied with LHC collision data and simulated data. Two main options for the hardware implementation will be studied with demonstrators: an FPGA based option with an embedded ARM microprocessor ...

Development of a Highly Selective Muon Trigger Exploiting the High Spatial Resolution of Monitored Drift-Tube Chambers for the ATLAS Experiment at the HL-LHC

CERN Document Server

Kortner, Oliver; The ATLAS collaboration

2018-01-01

The High-Luminosity LHC will provide the unique opportunity to explore the nature of physics beyond the Standard Model. Highly selective first level triggers are essential for the physics programme of the ATLAS experiment at the HL-LHC, where the instantaneous luminosity will exceed the LHC design instantaneous luminosity by almost an order of magnitude. The ATLAS first level muon trigger rate is dominated by low momentum muons, selected due to the moderate momentum resolution of the current system. This first level trigger limitation can be overcome by including data from the precision muon drift tube (MDT) chambers. This requires the fast continuous transfer of the MDT hits to the off-detector trigger logic and a fast track reconstruction algorithm performed in the trigger logic. The feasibility of this approach was studied with LHC collision data and simulated data. Two main options for the hardware implementation are currently studied with demonstrators, an FPGA based option with an embedded ARM microproc...

A Muon Trigger with high pT-resolution for Phase-II of the LHC Upgrade, based on the ATLAS Muon Drift Tube Chambers

CERN Document Server

Nowak, S; The ATLAS collaboration

2014-01-01

The ATLAS Muon Trigger in the ATLAS end-cap region is based on Thin Gap Chambers (TGC) which have an excellent time resolution but a moderate spatial resolution. The Muon Trigger efficiency curves show that for a transverse momentum ($p_{t}$) threshold of 20 GeVc$^{-1}$ the trigger rate is mainly dominated by muons with a $p_{t}$ between 10 GeVc$^{-1}$ and 20 GeVc$^{-1}$. To cope with the expected Muon Trigger rate at HL-LHC luminosities, we propose to include the precision tracking chambers (MDT) in the Muon Trigger. According to a potential study based on ATLAS data and assuming the HL-LHC scenario, this leads to a dramatical reduction of the Muon Trigger rate below the nominal threshold. As the already existing MDT chamber read-out chain is not capable of reading out the MDT fast enough to be used for the Muon Trigger, an additional fast read-out (FRO) chain with moderate spatial resolution but low latency is necessary. To conduct fast track reconstruction and muon $p_{t}$ determination with the data acqui...

Track-based improvement in the jet transverse momentum resolution for ATLAS

CERN Document Server

Marshall, Z; Schwartzmann, A

2011-01-01

We present a track-based method for improving the jet momentum resolution in ATLAS. Information is added to the reconstructed jet after the standard jet energy scale corrections have been applied. Track-based corrections are implemented, and a 10 − 15% improvement in the jet transverse momentum resolution at low pT is achieved. The method is explained, and some validation and physics results are presented. Additional variables are described and analyzed for their resolution improvement potential.

LungMAP: The Molecular Atlas of Lung Development Program.

Science.gov (United States)

Ardini-Poleske, Maryanne E; Clark, Robert F; Ansong, Charles; Carson, James P; Corley, Richard A; Deutsch, Gail H; Hagood, James S; Kaminski, Naftali; Mariani, Thomas J; Potter, Steven S; Pryhuber, Gloria S; Warburton, David; Whitsett, Jeffrey A; Palmer, Scott M; Ambalavanan, Namasivayam

2017-11-01

The National Heart, Lung, and Blood Institute is funding an effort to create a molecular atlas of the developing lung (LungMAP) to serve as a research resource and public education tool. The lung is a complex organ with lengthy development time driven by interactive gene networks and dynamic cross talk among multiple cell types to control and coordinate lineage specification, cell proliferation, differentiation, migration, morphogenesis, and injury repair. A better understanding of the processes that regulate lung development, particularly alveologenesis, will have a significant impact on survival rates for premature infants born with incomplete lung development and will facilitate lung injury repair and regeneration in adults. A consortium of four research centers, a data coordinating center, and a human tissue repository provides high-quality molecular data of developing human and mouse lungs. LungMAP includes mouse and human data for cross correlation of developmental processes across species. LungMAP is generating foundational data and analysis, creating a web portal for presentation of results and public sharing of data sets, establishing a repository of young human lung tissues obtained through organ donor organizations, and developing a comprehensive lung ontology that incorporates the latest findings of the consortium. The LungMAP website (www.lungmap.net) currently contains more than 6,000 high-resolution lung images and transcriptomic, proteomic, and lipidomic human and mouse data and provides scientific information to stimulate interest in research careers for young audiences. This paper presents a brief description of research conducted by the consortium, database, and portal development and upcoming features that will enhance the LungMAP experience for a community of users. Copyright © 2017 the American Physiological Society.

ATLAS MPGD production status

CERN Document Server

Schioppa, Marco; The ATLAS collaboration

2018-01-01

Micromegas (MICRO MEsh GAseous Structure) chambers are Micro-Pattern Gaseous Detectors designed to provide a high spatial resolution and reasonable good time resolution in highly irradiated environments. In 2007 an ambitious long-term R\\&D activity was started in the context of the ATLAS experiment, at CERN: the Muon ATLAS Micromegas Activity (MAMMA). After years of tests on prototypes and technology breakthroughs, Micromegas chambers were chosen as tracking detectors for an upgrade of the ATLAS Muon Spectrometer. These novel detectors will be installed in 2020 at the end of the second long shutdown of the Large Hadron Collider, and will serve mainly as precision detectors in the innermost part of the forward ATLAS Muon Spectrometer. Four different types of Micromegas modules, eight layers each, up to $3 m^2$ area (of unprecedented size), will cover a surface of $150 m^2$ for a total active area of about $1200 m^2$. With this upgrade the ATLAS muon system will maintain the full acceptance of its excellent...

aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

Science.gov (United States)

Niedworok, Christian J.; Brown, Alexander P. Y.; Jorge Cardoso, M.; Osten, Pavel; Ourselin, Sebastien; Modat, Marc; Margrie, Troy W.

2016-01-01

The validation of automated image registration and segmentation is crucial for accurate and reliable mapping of brain connectivity and function in three-dimensional (3D) data sets. While validation standards are necessarily high and routinely met in the clinical arena, they have to date been lacking for high-resolution microscopy data sets obtained from the rodent brain. Here we present a tool for optimized automated mouse atlas propagation (aMAP) based on clinical registration software (NiftyReg) for anatomical segmentation of high-resolution 3D fluorescence images of the adult mouse brain. We empirically evaluate aMAP as a method for registration and subsequent segmentation by validating it against the performance of expert human raters. This study therefore establishes a benchmark standard for mapping the molecular function and cellular connectivity of the rodent brain. PMID:27384127

High resolution heat atlases for demand and supply mapping

DEFF Research Database (Denmark)

Möller, Bernd; Nielsen, Steffen

2014-01-01

Significant reductions of heat demand, low-carbon and renewable energy sources, and district heating are key elements in 100% renewable energy systems. Appraisal of district heating along with energy efficient buildings and individual heat supply requires a geographical representation of heat...... demand, energy efficiency and energy supply. The present paper describes a Heat Atlas built around a spatial database using geographical information systems (GIS). The present atlas allows for per-building calculations of potentials and costs of energy savings, connectivity to existing district heat......, and current heat supply and demand. For the entire building mass a conclusive link is established between the built environment and its heat supply. The expansion of district heating; the interconnection of distributed district heating systems; or the question whether to invest in ultra-efficient buildings...

Position sensitive detection coupled to high-resolution time-of-flight mass spectrometry: Imaging for molecular beam deflection experiments

International Nuclear Information System (INIS)

Abd El Rahim, M.; Antoine, R.; Arnaud, L.; Barbaire, M.; Broyer, M.; Clavier, Ch.; Compagnon, I.; Dugourd, Ph.; Maurelli, J.; Rayane, D.

2004-01-01

We have developed and tested a high-resolution time-of-flight mass spectrometer coupled to a position sensitive detector for molecular beam deflection experiments. The major achievement of this new spectrometer is to provide a three-dimensional imaging (X and Y positions and time-of-flight) of the ion packet on the detector, with a high acquisition rate and a high resolution on both the mass and the position. The calibration of the experimental setup and its application to molecular beam deflection experiments are discussed

High resolution heat atlases for demand and supply mapping

Directory of Open Access Journals (Sweden)

Bernd Möller

2014-02-01

Full Text Available Significant reductions of heat demand, low-carbon and renewable energy sources, and district heating are key elements in 100% renewable energy systems. Appraisal of district heating along with energy efficient buildings and individual heat supply requires a geographical representation of heat demand, energy efficiency and energy supply. The present paper describes a Heat Atlas built around a spatial database using geographical information systems (GIS. The present atlas allows for per-building calculations of potentials and costs of energy savings, connectivity to existing district heat, and current heat supply and demand. For the entire building mass a conclusive link is established between the built environment and its heat supply. The expansion of district heating; the interconnection of distributed district heating systems; or the question whether to invest in ultra-efficient buildings with individual supply, or in collective heating using renewable energy for heating the current building stock, can be based on improved data.

FastTracker performance using the new“Variable Resolution Associative Memory”for Atlas

CERN Document Server

Iizawa, T; The ATLAS collaboration

2012-01-01

We report on performances of the new “variable resolution Associative Memory (AM)”applied to the reconstruction of top pair events buried in a large pile-up environment using the ATLAS detector. The AM is a VLSI processor for pattern recognition based on Content Addressable Memory (CAM) architecture. The AM is optimized for on-line track finding in high-energy physics experiments. Pattern matching is carried out by finding track candidates in coarse resolution “roads”. A large AM bank stores all trajectories of interest, called “patterns”, for a given detector resolution. The AM extracts roads compatible with a given event during detector read-out. Two important variables characterize the quality of the AM bank: its “coverage” (the fraction of tracks that match at least one pattern in the bank) and the level of “fake candidates” (roughly proportional to the number of patterns in the bank). As the luminosity increases, the fake rate increases rapidly because of the increased silicon occupan...

A digital atlas of the dog brain.

Directory of Open Access Journals (Sweden)

Ritobrato Datta

Full Text Available There is a long history and a growing interest in the canine as a subject of study in neuroscience research and in translational neurology. In the last few years, anatomical and functional magnetic resonance imaging (MRI studies of awake and anesthetized dogs have been reported. Such efforts can be enhanced by a population atlas of canine brain anatomy to implement group analyses. Here we present a canine brain atlas derived as the diffeomorphic average of a population of fifteen mesaticephalic dogs. The atlas includes: 1 A brain template derived from in-vivo, T1-weighted imaging at 1 mm isotropic resolution at 3 Tesla (with and without the soft tissues of the head; 2 A co-registered, high-resolution (0.33 mm isotropic template created from imaging of ex-vivo brains at 7 Tesla; 3 A surface representation of the gray matter/white matter boundary of the high-resolution atlas (including labeling of gyral and sulcal features. The properties of the atlas are considered in relation to historical nomenclature and the evolutionary taxonomy of the Canini tribe. The atlas is available for download (https://cfn.upenn.edu/aguirre/wiki/public:data_plosone_2012_datta.

A First-Level Muon Trigger Based on the ATLAS Muon Drift Tube Chambers With High Momentum Resolution for LHC Phase II

CERN Document Server

Richter, R; The ATLAS collaboration; Ott, S; Kortner, O; Fras, M; Gabrielyan, V; Danielyan, V; Fink, D; Nowak, S; Schwegler, P; Abovyan, S

2014-01-01

The Level-1 (L1) trigger for muons with high transverse momentum (pT) in ATLAS is based on chambers with excellent time resolution, able to identify muons coming from a particular beam crossing. These trigger chambers also provide a fast pT-measurement of the muons, the accuracy of the measurement being limited by the moderate spatial resolution of the chambers along the deflecting direction of the magnetic field (eta-coordinate). The higher luminosity foreseen for Phase-II puts stringent limits on the L1 trigger rates, and a way to control these rates would be to improve the spatial resolution of the triggering system, drastically sharpening the turn-on curve of the L1 trigger. To do this, the precision tracking chambers (MDT) can be used in the L1 trigger, provided the corresponding trigger latency is increased as foreseen. The trigger rate reduction is accomplished by strongly decreasing the rate of triggers from muons with pT lower than a predefined threshold (typically 20 GeV), which would otherwise trig...

A major upgrade of the sediment echosounder ATLAS PARASOUND and the digital acquisition software ParaDigMA for high-resolution sea floor studies

Science.gov (United States)

Gerriets, A.; von Lom-Keil, H.; Spiess, V.; Zwanzig, C.; Bruns, R.

2003-04-01

The combination of the ATLAS PARASOUND sediment echosounder, designed by ATLAS Hydrographic, and the digital recording software package ParaDigMA (commercially available as ATLAS PARASTORE-3) for online digitisation, preprocessing and visualisation of recorded seismograms has proven to be a reliable system for high-resolution acoustic sea floor studies. During 10 years of successful operation aboard several research vessels, including R/V Meteor, R/V Sonne and R/V Polarstern, the system has been only slightly modified. Based on this experience, today's PARASOUND/ParaDigMA system has accomplished the step from DOS towards Windows platform and network capability. In cooperation of ATLAS Hydrographic and the Department of Earth Sciences, University of Bremen a major upgrade of the PARASOUND/ParaDigMA system has been developed that adds significant functionality for surveys of sediment structures and sea floor morphology. The innovations primarily concern the control section of the ATLAS PARASOUND echosounder and the ParaDigMA user front end. The previous analogue PARASOUND control terminal has been replaced by a small real time control PC responsible for the control of the echosounder as well as for the continuous digitisation of the data. The control PC communicates via standard network protocols metadata and data with client applications that can display and store the acquired data on different computers on the network. The new network capabilities of the system overcome former limitations and admit a high flexibility with respect to numbers and locations of operator and recording/display PCs. The system now offers a simultaneous parallel registration of the 2.5-5.5kHz parametric signal and the 18kHz NBS signal. This feature in combination with the recording of complete soundings including the entire water column provides the basis for evolving scientific research topics e. g. gas venting. The ParaDigMA recording software now operates on Windows platforms which

kspectrum: an open-source code for high-resolution molecular absorption spectra production

International Nuclear Information System (INIS)

Eymet, V.; Coustet, C.; Piaud, B.

2016-01-01

We present the kspectrum, scientific code that produces high-resolution synthetic absorption spectra from public molecular transition parameters databases. This code was originally required by the atmospheric and astrophysics communities, and its evolution is now driven by new scientific projects among the user community. Since it was designed without any optimization that would be specific to any particular application field, its use could also be extended to other domains. kspectrum produces spectral data that can subsequently be used either for high-resolution radiative transfer simulations, or for producing statistic spectral model parameters using additional tools. This is a open project that aims at providing an up-to-date tool that takes advantage of modern computational hardware and recent parallelization libraries. It is currently provided by Méso-Star (http://www.meso-star.com) under the CeCILL license, and benefits from regular updates and improvements. (paper)

Construction of an in vivo human spinal cord atlas based on high-resolution MR images at cervical and thoracic levels: preliminary results.

Science.gov (United States)

Taso, Manuel; Le Troter, Arnaud; Sdika, Michaël; Ranjeva, Jean-Philippe; Guye, Maxime; Bernard, Monique; Callot, Virginie

2014-06-01

Our goal was to build a probabilistic atlas and anatomical template of the human cervical and thoracic spinal cord (SC) that could be used for segmentation algorithm improvement, parametric group studies, and enrichment of biomechanical modelling. High-resolution axial T2*-weighted images were acquired at 3T on 15 healthy volunteers using a multi-echo-gradient-echo sequence (1 slice per vertebral level from C1 to L2). After manual segmentation, linear and affine co-registrations were performed providing either inter-individual morphometric variability maps, or substructure probabilistic maps [CSF, white and grey matter (WM/GM)] and anatomical SC template. The larger inter-individual morphometric variations were observed at the thoraco-lumbar levels and in the posterior GM. Mean SC diameters were in agreement with the literature and higher than post-mortem measurements. A representative SC MR template was generated and values up to 90 and 100% were observed on GM and WM-probability maps. This work provides a probabilistic SC atlas and a template that could offer great potentialities for parametrical MRI analysis (DTI/MTR/fMRI) and group studies, similar to what has already been performed using a brain atlas. It also offers great perspective for biomechanical models usually based on post-mortem or generic data. Further work will consider integration into an automated SC segmentation pipeline.

Toward the holistic, reference, and extendable atlas of the human brain, head, and neck.

Science.gov (United States)

Nowinski, Wieslaw L

2015-06-01

Despite numerous efforts, a fairly complete (holistic) anatomical model of the whole, normal, adult human brain, which is required as the reference in brain studies and clinical applications, has not yet been constructed. Our ultimate objective is to build this kind of atlas from advanced in vivo imaging. This work presents the taxonomy of our currently developed brain atlases and addresses the design, content, functionality, and current results in the holistic atlas development as well as atlas usefulness and future directions. We have developed to date 35 commercial brain atlases (along with numerous research prototypes), licensed to 63 companies and institutions, and made available to medical societies, organizations, medical schools, and individuals. These atlases have been applied in education, research, and clinical applications. Hundreds of thousands of patients have been treated by using our atlases. Based on this experience, the first version of the holistic and reference atlas of the brain, head, and neck has been developed and made available. The atlas has been created from multispectral 3 and 7 Tesla and high-resolution CT in vivo scans. It is fully 3D, scalable, interactive, and highly detailed with about 3,000 labeled components. This atlas forms a foundation for the development of a multi-level molecular, cellular, anatomical, physiological, and behavioral brain atlas platform.

INTRIGOSS: A new Library of High Resolution Synthetic Spectra

Science.gov (United States)

Franchini, Mariagrazia; Morossi, Carlo; Di Marcancantonio, Paolo; Chavez, Miguel; GES-Builders

2018-01-01

INTRIGOSS (INaf Trieste Grid Of Synthetic Spectra) is a new High Resolution (HiRes) synthetic spectral library designed for studying F, G, and K stars. The library is based on atmosphere models computed with specified individual element abundances via ATLAS12 code. Normalized SPectra (NSP) and surface Flux SPectra (FSP), in the 4800-5400 Å wavelength range, were computed by means of the SPECTRUM code. The synthetic spectra are computed with an atomic and bi-atomic molecular line list including "bona fide" Predicted Lines (PLs) built by tuning loggf to reproduce very high SNR Solar spectrum and the UVES-U580 spectra of five cool giants extracted from the Gaia-ESO survey (GES). The astrophysical gf-values were then assessed by using more than 2000 stars with homogenous and accurate atmosphere parameters and detailed chemical composition from GES. The validity and greater accuracy of INTRIGOSS NSPs and FSPs with respect to other available spectral libraries is discussed. INTRIGOSS will be available on the web and will be a valuable tool for both stellar atmospheric parameters and stellar population studies.

Search for a high mass diphoton resonance using the ATLAS detector

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00104125; The ATLAS collaboration

2017-01-01

High-mass states decaying into two photons are predicted in many extensions of the Standard Model (SM). The diphoton final state provides a clean experimental signature with good invariant mass resolution and moderate backgrounds. Searches for high-mass resonances decaying into two photons for a spin-0 or spin-2 state are presented. The latest ATLAS results using p-p collision data at 13 TeV and covering a large mass range are discussed.

Muon reconstruction efficiency, momentum scale and resolution in pp collisions at 8TeV with ATLAS

CERN Document Server

Dimitrievska, A; The ATLAS collaboration

2014-01-01

The ATLAS experiment identifies and reconstructs muons with two high precision tracking systems, the Inner Detector and the Muon Spectrometer, which provide independent measurements of the muon momentum. This poster summarizes the performance of the combined muon reconstruction in terms of reconstruction efficiency, momentum scale and resolution. Data-driven techniques are used to derive corrections to be applied to simulation in order to reproduce the reconstruction efficiency, momentum scale and resolution as observed in experimental data, and to asses systematic uncertainties on these quantities. The analysed dataset corresponds to an integrated luminosity of 20.4 fb−1 from 8 TeV pp collisions recorded in 2012.

Monitoring and Tracking the LHC Beam Spot within the ATLAS High Level Trigger

CERN Document Server

Winklmeier, F; The ATLAS collaboration

2012-01-01

The parameters of the beam spot produced by the LHC in the ATLAS interaction region are computed online using the ATLAS High Level Trigger (HLT) system. The high rate of triggered events is exploited to make precise measurements of the position, size and orientation of the luminous region in near real-time, as these parameters change significantly even during a single data-taking run. We present the challenges, solutions and results for the online determination, monitoring and beam spot feedback system in ATLAS. A specially designed algorithm, which uses tracks registered in the silicon detectors to reconstruct event vertices, is executed on the HLT processor farm of several thousand CPU cores. Monitoring histograms from all the cores are sampled and aggregated across the farm every 60 seconds. The reconstructed beam values are corrected for detector resolution effects, measured in situ from the separation of vertices whose tracks have been split into two collections. Furthermore, measurements for individual ...

Very high-resolution regional climate simulations over Scandinavia-present climate

DEFF Research Database (Denmark)

Christensen, Ole B.; Christensen, Jens H.; Machenhauer, Bennert

1998-01-01

realistically simulated. It is found in particular that in mountainous regions the high-resolution simulation shows improvements in the simulation of hydrologically relevant fields such as runoff and snow cover. Also, the distribution of precipitation on different intensity classes is most realistically...... on a high-density station network for the Scandinavian countries compiled for the present study. The simulated runoff is compared with observed data from Sweden extracted from a Swedish climatological atlas. These runoff data indicate that the precipitation analyses are underestimating the true...... simulated in the high-resolution simulation. It does, however, inherit certain large-scale systematic errors from the driving GCM. In many cases these errors increase with increasing resolution. Model verification of near-surface temperature and precipitation is made using a new gridded climatology based...

Extension of least squares spectral resolution algorithm to high-resolution lipidomics data

Energy Technology Data Exchange (ETDEWEB)

Zeng, Ying-Xu [Department of Chemistry, University of Bergen, PO Box 7803, N-5020 Bergen (Norway); Mjøs, Svein Are, E-mail: svein.mjos@kj.uib.no [Department of Chemistry, University of Bergen, PO Box 7803, N-5020 Bergen (Norway); David, Fabrice P.A. [Bioinformatics and Biostatistics Core Facility, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), Lausanne (Switzerland); Schmid, Adrien W. [Proteomics Core Facility, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne (Switzerland)

2016-03-31

Lipidomics, which focuses on the global study of molecular lipids in biological systems, has been driven tremendously by technical advances in mass spectrometry (MS) instrumentation, particularly high-resolution MS. This requires powerful computational tools that handle the high-throughput lipidomics data analysis. To address this issue, a novel computational tool has been developed for the analysis of high-resolution MS data, including the data pretreatment, visualization, automated identification, deconvolution and quantification of lipid species. The algorithm features the customized generation of a lipid compound library and mass spectral library, which covers the major lipid classes such as glycerolipids, glycerophospholipids and sphingolipids. Next, the algorithm performs least squares resolution of spectra and chromatograms based on the theoretical isotope distribution of molecular ions, which enables automated identification and quantification of molecular lipid species. Currently, this methodology supports analysis of both high and low resolution MS as well as liquid chromatography-MS (LC-MS) lipidomics data. The flexibility of the methodology allows it to be expanded to support more lipid classes and more data interpretation functions, making it a promising tool in lipidomic data analysis. - Highlights: • A flexible strategy for analyzing MS and LC-MS data of lipid molecules is proposed. • Isotope distribution spectra of theoretically possible compounds were generated. • High resolution MS and LC-MS data were resolved by least squares spectral resolution. • The method proposed compounds that are likely to occur in the analyzed samples. • The proposed compounds matched results from manual interpretation of fragment spectra.

Extension of least squares spectral resolution algorithm to high-resolution lipidomics data

International Nuclear Information System (INIS)

Zeng, Ying-Xu; Mjøs, Svein Are; David, Fabrice P.A.; Schmid, Adrien W.

2016-01-01

Lipidomics, which focuses on the global study of molecular lipids in biological systems, has been driven tremendously by technical advances in mass spectrometry (MS) instrumentation, particularly high-resolution MS. This requires powerful computational tools that handle the high-throughput lipidomics data analysis. To address this issue, a novel computational tool has been developed for the analysis of high-resolution MS data, including the data pretreatment, visualization, automated identification, deconvolution and quantification of lipid species. The algorithm features the customized generation of a lipid compound library and mass spectral library, which covers the major lipid classes such as glycerolipids, glycerophospholipids and sphingolipids. Next, the algorithm performs least squares resolution of spectra and chromatograms based on the theoretical isotope distribution of molecular ions, which enables automated identification and quantification of molecular lipid species. Currently, this methodology supports analysis of both high and low resolution MS as well as liquid chromatography-MS (LC-MS) lipidomics data. The flexibility of the methodology allows it to be expanded to support more lipid classes and more data interpretation functions, making it a promising tool in lipidomic data analysis. - Highlights: • A flexible strategy for analyzing MS and LC-MS data of lipid molecules is proposed. • Isotope distribution spectra of theoretically possible compounds were generated. • High resolution MS and LC-MS data were resolved by least squares spectral resolution. • The method proposed compounds that are likely to occur in the analyzed samples. • The proposed compounds matched results from manual interpretation of fragment spectra.

Structural atlas of dynein motors at atomic resolution.

Science.gov (United States)

Toda, Akiyuki; Tanaka, Hideaki; Kurisu, Genji

2018-04-01

Dynein motors are biologically important bio-nanomachines, and many atomic resolution structures of cytoplasmic dynein components from different organisms have been analyzed by X-ray crystallography, cryo-EM, and NMR spectroscopy. This review provides a historical perspective of structural studies of cytoplasmic and axonemal dynein including accessory proteins. We describe representative structural studies of every component of dynein and summarize them as a structural atlas that classifies the cytoplasmic and axonemal dyneins. Based on our review of all dynein structures in the Protein Data Bank, we raise two important points for understanding the two types of dynein motor and discuss the potential prospects of future structural studies.

The Kaguya Lunar Atlas The Moon in High Resolution

CERN Document Server

Shirao, Motomaro

2011-01-01

In late 2007 the Japan Aerospace Exploration Agency placed the Kaguya/Selene spacecraft in orbit around the Moon. Like previous lunar orbiters, Kaguya carried scientific instruments to probe the Moon’s surface and interior. But it also had the first high-definition television camera (HDTV) sent to the Moon. Sponsored by the Japanese NHK TV network, the HDTV has amazed both scientists and the public with its magnificent views of the lunar surface. What makes the images much more engaging than standard vertical-view lunar photographs is that they were taken looking obliquely along the flight path. Thus, they show the Moon as it would be seen by an astronaut looking through a porthole window while orbiting only 100 km above the lunar surface. This is the view we all would wish to have, but are never likely to, except vicariously through the awe-inspiring Kaguya HDTV images. The remarkable Kaguya/Selene HDTV images are used here to create a new type of lunar atlas. Because of the unique perspective of the imag...

A high-resolution anatomical ontology of the developing murine genitourinary tract

Science.gov (United States)

Little, Melissa H.; Brennan, Jane; Georgas, Kylie; Davies, Jamie A.; Davidson, Duncan R.; Baldock, Richard A.; Beverdam, Annemiek; Bertram, John F.; Capel, Blanche; Chiu, Han Sheng; Clements, Dave; Cullen-McEwen, Luise; Fleming, Jean; Gilbert, Thierry; Houghton, Derek; Kaufman, Matt H.; Kleymenova, Elena; Koopman, Peter A.; Lewis, Alfor G.; McMahon, Andrew P.; Mendelsohn, Cathy L.; Mitchell, Eleanor K.; Rumballe, Bree A.; Sweeney, Derina E.; Valerius, M. Todd; Yamada, Gen; Yang, Yiya; Yu., Jing

2007-01-01

Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The ontology is being used to annotate in situ hybridisation data generated as part of the Genitourinary Development Molecular Anatomy Project (GUDMAP), a publicly available data resource on gene and protein expression during genitourinary development. The GUDMAP ontology encompasses Theiler stage (TS) 17 to 27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterised structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. We describe here the principles and structure of the ontology and provide representative diagrammatic, histological, and whole mount and section RNA in situ hybridisation images to clarify the terms used within the ontology. Visual examples of how terms appear in different specimen types are also provided. PMID:17452023

High-rate irradiation of 15 mm muon drift tubes and development of an ATLAS compatible readout driver for micromegas detectors

Energy Technology Data Exchange (ETDEWEB)

Zibell, Andre

2014-06-06

The upcoming luminosity upgrades of the LHC accelerator at CERN demand several upgrades to the detectors of the ATLAS muon spectrometer, mainly due to the proportionally increasing rate of uncorrelated background irradiation. This concerns also the ''Small Wheel'' tracking stations of the ATLAS muon spectrometer, where precise muon track reconstruction will no longer be assured when around 2020 the LHC luminosity is expected to reach values 2 to 5 times the design luminosity of 1 x 10{sup 34} cm{sup -2}s{sup -1}, and when background hit rates will exceed 10 kHz/cm{sup 2}. This, together with the need of an additional triggering station in this area with an angular resolution of 1 mrad, requires the construction of ''New Small Wheel'' detectors for a complete replacement during the long maintenance period in 2018 and 2019. As possible technology for these New Small Wheels, high-rate capable sMDT drift tubes have been investigated, based on the ATLAS 30 mm Monitored Drift Tube technology, but with a smaller diameter of 15 mm. In this work, a prototype sMDT chamber has been tested under the influence of high-rate irradiation with protons, neutrons and photons at the Munich tandem accelerator, simulating the conditions within a high luminosity LHC experiment. Tracking resolution and detection efficiency for minimum ionizing muons are presented as a function of irradiation rate. The experimental muon trigger geometry allows to distinguish between efficiency degradation due to deadtime effects and space charge in the detectors. Using modified readout electronics the analog pulse shape of the detector has been investigated for gain reduction and potential irregularities due to the high irradiation rates and ionization doses. This study shows that the sMDT detectors would fulfill all requirements for successful use in the ATLAS New Small Wheel endcap detector array, with an average spatial resolution of 140 μm and a track

High-rate irradiation of 15 mm muon drift tubes and development of an ATLAS compatible readout driver for micromegas detectors

International Nuclear Information System (INIS)

Zibell, Andre

2014-01-01

The upcoming luminosity upgrades of the LHC accelerator at CERN demand several upgrades to the detectors of the ATLAS muon spectrometer, mainly due to the proportionally increasing rate of uncorrelated background irradiation. This concerns also the ''Small Wheel'' tracking stations of the ATLAS muon spectrometer, where precise muon track reconstruction will no longer be assured when around 2020 the LHC luminosity is expected to reach values 2 to 5 times the design luminosity of 1 x 10 34 cm -2 s -1 , and when background hit rates will exceed 10 kHz/cm 2 . This, together with the need of an additional triggering station in this area with an angular resolution of 1 mrad, requires the construction of ''New Small Wheel'' detectors for a complete replacement during the long maintenance period in 2018 and 2019. As possible technology for these New Small Wheels, high-rate capable sMDT drift tubes have been investigated, based on the ATLAS 30 mm Monitored Drift Tube technology, but with a smaller diameter of 15 mm. In this work, a prototype sMDT chamber has been tested under the influence of high-rate irradiation with protons, neutrons and photons at the Munich tandem accelerator, simulating the conditions within a high luminosity LHC experiment. Tracking resolution and detection efficiency for minimum ionizing muons are presented as a function of irradiation rate. The experimental muon trigger geometry allows to distinguish between efficiency degradation due to deadtime effects and space charge in the detectors. Using modified readout electronics the analog pulse shape of the detector has been investigated for gain reduction and potential irregularities due to the high irradiation rates and ionization doses. This study shows that the sMDT detectors would fulfill all requirements for successful use in the ATLAS New Small Wheel endcap detector array, with an average spatial resolution of 140 μm and a track reconstruction efficiency

Muon reconstruction efficiency, momentum scale and resolution in pp collisions at 8TeV with ATLAS

CERN Document Server

Dimitrievska, A; The ATLAS collaboration; Sforza, F

2014-01-01

The ATLAS experiment identifies and reconstructs muons with two high precision tracking systems, the inner detector and the muon spectrometer, which provide independent measurements of the muon momentum. This poster summarizes the performance of the combined muon reconstruction in terms of reconstruction efficiency, momentum scale and resolution. Data-driven techniques are used to derive corrections to be applied to simulation in order to reproduce the reconstruction efficiency, momentum scale and resolution as observed in experimental data, and to asses systematic uncertainties on these quantities. The analysed dataset corresponds to an integrated luminosity of 20.4 fb−1 from pp collisions at center of mass enegy of 8 TeV recorded in 2012.

Molecular imaging: High-resolution detectors for early diagnosis and therapy monitoring of breast cancer

Energy Technology Data Exchange (ETDEWEB)

Garibaldi, F. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy)]. E-mail: Franco.garibaldi@iss.infn.it; Cisbani, E. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Colilli, S. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Cusanno, F. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Fratoni, R. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Giuliani, F. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Gricia, M. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Lucentini, M. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Fratoni, R. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Lo Meo, S. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Magliozzi, M.L. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Santanvenere, F. [Istituto Superiore di Sanita and INFN-gr. Sanita-Rome (Italy); Cinti, M.N. [University La Sapienza, Rome (Italy); Pani, R. [University La Sapienza, Rome (Italy); Pellegrini, R. [University La Sapienza, Rome (Italy); Simonetti, G. [University Tor Vergata, Rome (Italy); Schillaci, O. [University Tor Vergata, Rome (Italy); Del Vecchio, S. [CNR Napoli, Naples (Italy); Salvatore, M. [CNR Napoli, Naples (Italy); Majewski, S. [Jefferson Lab, Newport News, VA (United States); Lanza, R.C. [Massachusetts Institute of Technology, Cambridge, MA (United States); De Vincentis, G. [University La Sapienza, Rome (Italy); Scopinaro, F. [University La Sapienza, Rome (Italy)

2006-12-20

Dedicated high-resolution detectors are required for detection of small cancerous breast tumours by molecular imaging with radionuclides. Absorptive collimation is normally applied in imaging single photon emitters, but it results in a strong reduction in detection efficiency. Systems based on electronic collimation are complex and expensive. For these reasons simulations and measurements have been performed to design optimised dedicated high-resolution mini gamma camera. Critical parameters are contrast and signal-to-noise ratio (SNR). Intrinsic performance (spatial resolution, pixel identification, and response linearity and uniformity) were first optimised. Pixellated scintillator arrays (NaI(Tl)) of different pixel size were coupled to arrays of PSPMTs with different anode pad dimensions (6x6 mm{sup 2} and 3x3 mm{sup 2}). Detectors having a field of view (FOV) of 100x100 mm{sup 2} and 150x200 mm{sup 2} were designed and built. The electronic system allows read out of all the anode pad signals. The collimation technique was then considered and limits of coded aperture option were studied. Preliminary results are presented.

High-voltage pixel detectors in commercial CMOS technologies for ATLAS, CLIC and Mu3e experiments

CERN Document Server

Peric,I et al.

2013-01-01

High-voltage particle detectors in commercial CMOS technologies are a detector family that allows implementation of low-cost, thin and radiation-tolerant detectors with a high time resolution. In the R/D phase of the development, a radiation tolerance of 1015 neq=cm2 , nearly 100% detection efficiency and a spatial resolution of about 3 μm were demonstrated. Since 2011 the HV detectors have first applications: the technology is presently the main option for the pixel detector of the planned Mu3e experiment at PSI (Switzerland). Several prototype sensors have been designed in a standard 180 nm HV CMOS process and successfully tested. Thanks to its high radiation tolerance, the HV detectors are also seen at CERN as a promising alternative to the standard options for ATLAS upgrade and CLIC. In order to test the concept, within ATLAS upgrade R/D, we are currently exploring an active pixel detector demonstrator HV2FEI4; also implemented in the 180 nm HV process.

Physics potential of ATLAS detector with high luminosity

International Nuclear Information System (INIS)

Zhou, Bing

2004-01-01

The ATLAS detector is designed to exploit the full physics potential in the TeV energy region opened up by the Large Hadron Collider at a center of mass energy of 14 TeV with very high luminosities. The physics performance of the ATLAS detector on Higgs, extra-dimension and strong symmetry breaking scenario is summarized in this note. ATLAS experiment has great discovery potential for these new phenomena with high luminosity. Triple gauge couplings are very sensitive for probing new physics at TeV scale. We show that ATLAS can measure these couplings very precisely with high luminosity. (orig.)

Ultra-high resolution protein crystallography

International Nuclear Information System (INIS)

Takeda, Kazuki; Hirano, Yu; Miki, Kunio

2010-01-01

Many protein structures have been determined by X-ray crystallography and deposited with the Protein Data Bank. However, these structures at usual resolution (1.5< d<3.0 A) are insufficient in their precision and quantity for elucidating the molecular mechanism of protein functions directly from structural information. Several studies at ultra-high resolution (d<0.8 A) have been performed with synchrotron radiation in the last decade. The highest resolution of the protein crystals was achieved at 0.54 A resolution for a small protein, crambin. In such high resolution crystals, almost all of hydrogen atoms of proteins and some hydrogen atoms of bound water molecules are experimentally observed. In addition, outer-shell electrons of proteins can be analyzed by the multipole refinement procedure. However, the influence of X-rays should be precisely estimated in order to derive meaningful information from the crystallographic results. In this review, we summarize refinement procedures, current status and perspectives for ultra high resolution protein crystallography. (author)

Creation of computerized 3D MRI-integrated atlases of the human basal ganglia and thalamus

Directory of Open Access Journals (Sweden)

Abbas F. Sadikot

2011-09-01

Full Text Available Functional brain imaging and neurosurgery in subcortical areas often requires visualization of brain nuclei beyond the resolution of current Magnetic Resonance Imaging (MRI methods. We present techniques used to create: 1 a lower resolution 3D atlas, based on the Schaltenbrand and Wahren print atlas, which was integrated into a stereotactic neurosurgery planning and visualization platform (VIPER; and 2 a higher resolution 3D atlas derived from a single set of manually segmented histological slices containing nuclei of the basal ganglia, thalamus, basal forebrain and medial temporal lobe. Both atlases were integrated to a canonical MRI (Colin27 from a young male participant by manually identifying homologous landmarks. The lower resolution atlas was then warped to fit the MRI based on the identified landmarks. A pseudo-MRI representation of the high-resolution atlas was created, and a nonlinear transformation was calculated in order to match the atlas to the template MRI. The atlas can then be warped to match the anatomy of Parkinson’s disease surgical candidates by using 3D automated nonlinear deformation methods. By way of functional validation of the atlas, the location of the sensory thalamus was correlated with stereotactic intraoperative physiological data. The position of subthalamic electrode positions in patients with Parkinson’s disease was also evaluated in the atlas-integrated MRI space. Finally, probabilistic maps of subthalamic stimulation electrodes were developed, in order to allow group analysis of the location of contacts associated with the best motor outcomes. We have therefore developed, and are continuing to validate, a high-resolution computerized MRI-integrated 3D histological atlas, which is useful in functional neurosurgery, and for functional and anatomical studies of the human basal ganglia, thalamus and basal forebrain.

Molecular-resolution imaging of pentacene on KCl(001

Directory of Open Access Journals (Sweden)

Julia L. Neff

2012-02-01

Full Text Available The growth of pentacene on KCl(001 at submonolayer coverage was studied by dynamic scanning force microscopy. At coverages below one monolayer pentacene was found to arrange in islands with an upright configuration. The molecular arrangement was resolved in high-resolution images. In these images two different types of patterns were observed, which switch repeatedly. In addition, defects were found, such as a molecular vacancy and domain boundaries.

Development and Implementation of a Corriedale Ovine Brain Atlas for Use in Atlas-Based Segmentation.

Directory of Open Access Journals (Sweden)

Kishan Andre Liyanage

Full Text Available Segmentation is the process of partitioning an image into subdivisions and can be applied to medical images to isolate anatomical or pathological areas for further analysis. This process can be done manually or automated by the use of image processing computer packages. Atlas-based segmentation automates this process by the use of a pre-labelled template and a registration algorithm. We developed an ovine brain atlas that can be used as a model for neurological conditions such as Parkinson's disease and focal epilepsy. 17 female Corriedale ovine brains were imaged in-vivo in a 1.5T (low-resolution MRI scanner. 13 of the low-resolution images were combined using a template construction algorithm to form a low-resolution template. The template was labelled to form an atlas and tested by comparing manual with atlas-based segmentations against the remaining four low-resolution images. The comparisons were in the form of similarity metrics used in previous segmentation research. Dice Similarity Coefficients were utilised to determine the degree of overlap between eight independent, manual and atlas-based segmentations, with values ranging from 0 (no overlap to 1 (complete overlap. For 7 of these 8 segmented areas, we achieved a Dice Similarity Coefficient of 0.5-0.8. The amygdala was difficult to segment due to its variable location and similar intensity to surrounding tissues resulting in Dice Coefficients of 0.0-0.2. We developed a low resolution ovine brain atlas with eight clinically relevant areas labelled. This brain atlas performed comparably to prior human atlases described in the literature and to intra-observer error providing an atlas that can be used to guide further research using ovine brains as a model and is hosted online for public access.

High-voltage pixel detectors in commercial CMOS technologies for ATLAS, CLIC and Mu3e experiments

CERN Document Server

Peric, Ivan; Backhaus, Malte; Barbero, Marlon; Benoit, Mathieu; Berger, Niklaus; Bompard, Frederic; Breugnon, Patrick; Clemens, Jean-Claude; Dannheim, Dominik; Dierlamm, Alexander; Feigl, Simon; Fischer, Peter; Fougeron, Denis; Garcia-Sciveres, Maurice; Heim, Timon; Hügging, Fabian; Kiehn, Moritz; Kreidl, Christian; Krüger, Hans; La Rosa, Alessandro; Liu, Jian; Lütticke, Florian; Mariñas, Carlos; Meng, Lingxin; Miucci, Antonio; Münstermann, Daniel; Nguyen, Hong Hanh; Obermann, Theresa; Pangaud, Patrick; Perrevoort, Ann-Kathrin; Rozanov, Alexandre; Schöning, André; Schwenker, Benjamin; Wiedner, Dirk

2013-01-01

High-voltage particle detectors in commercial CMOS technologies are a detector family that allows implementation of low-cost, thin and radiation-tolerant detectors with a high time resolution. In the R/D phase of the development, a radiation tolerance of 10 15 n eq = cm 2 , nearly 100% detection ef fi ciency and a spatial resolution of about 3 μ m were demonstrated. Since 2011 the HV detectors have fi rst applications: the technology is presently the main option for the pixel detector of the planned Mu3e experiment at PSI (Switzerland). Several prototype sensors have been designed in a standard 180 nm HV CMOS process and successfully tested. Thanks to its high radiation tolerance, the HV detectors are also seen at CERN as a promising alternative to the standard options for ATLAS upgrade and CLIC. In order to test the concept, within ATLAS upgrade R/D, we are currently exploring an active pixel detector demonstrator HV2FEI4; also implemented in the 180 nm HV process

A high-resolution atlas of the infrared spectrum of the Sun and the Earth atmosphere from space: A compilation of ATMOS spectra of the region from 650 to 4800 cm (2.3 to 16 micron). Volume 1: The Sun

Science.gov (United States)

Farmer, Crofton B.; Norton, Robert H.

1989-01-01

During the period April 29 through May 2, 1985, the Atmospheric Trace Molecular Spectroscopy experiment was operated as part of the Spacelab-3 payload of the shuttle Challenger. The instrument, a modified Michelson Interferometer covering the frequency range from 600 to 5000/cm, at a spectral resolution of 0.01/cm, recorded infrared spectra of the Sun and of the Earth's atmosphere at times close to entry into and exit from occultation by the Earth's limb as seen from the shuttle orbit of 360 km. Spectra were obtained that are free from absorptions due to constituents of the atmosphere (i.e., solar pure spectra), as well as spectra of the atmosphere itself, covering line-of-sight tangent altitudes that span the range from the lower thermosphere to the bottom of the troposphere. This atlas, believed to be the first record of observations of the continuous high resolution infrared spectrum of the Sun and the Earth's atmosphere from space, provides a compilation of these spectra arranged in a hardcopy format suitable for quick-look reference purposes; the data are also available in digital form.

Development of Fast High-Resolution Muon Drift-Tube Detectors for High Counting Rates

CERN Document Server

INSPIRE-00287945; Dubbert, J.; Horvat, S.; Kortner, O.; Kroha, H.; Legger, F.; Richter, R.; Adomeit, S.; Biebel, O.; Engl, A.; Hertenberger, R.; Rauscher, F.; Zibell, A.

2011-01-01

Pressurized drift-tube chambers are e?cient detectors for high-precision tracking over large areas. The Monitored Drift-Tube (MDT) chambers of the muon spectrometer of the ATLAS detector at the Large Hadron Collider (LHC) reach a spatial resolution of 35 micons and almost 100% tracking e?ciency with 6 layers of 30 mm diameter drift tubes operated with Ar:CO2 (93:7) gas mixture at 3 bar and a gas gain of 20000. The ATLAS MDT chambers are designed to cope with background counting rates due to neutrons and gamma-rays of up to about 300 kHz per tube which will be exceeded for LHC luminosities larger than the design value of 10-34 per square cm and second. Decreasing the drift-tube diameter to 15 mm while keeping the other parameters, including the gas gain, unchanged reduces the maximum drift time from about 700 ns to 200 ns and the drift-tube occupancy by a factor of 7. New drift-tube chambers for the endcap regions of the ATLAS muon spectrometer have been designed. A prototype chamber consisting of 12 times 8 l...

Intramolecular diffusive motion in alkane monolayers studied by high-resolution quasielastic neutron scattering and molecular dynamics simulations

DEFF Research Database (Denmark)

Hansen, Flemming Yssing; Criswell, L.; Fuhrmann, D

2004-01-01

Molecular dynamics simulations of a tetracosane (n-C24H50) monolayer adsorbed on a graphite basal-plane surface show that there are diffusive motions associated with the creation and annihilation of gauche defects occurring on a time scale of similar to0.1-4 ns. We present evidence...... that these relatively slow motions are observable by high-energy-resolution quasielastic neutron scattering (QNS) thus demonstrating QNS as a technique, complementary to nuclear magnetic resonance, for studying conformational dynamics on a nanosecond time scale in molecular monolayers....

Spectroscopic measurements with the ATLAS FE-I4 pixel readout chip

Energy Technology Data Exchange (ETDEWEB)

Pohl, David-Leon; Janssen, Jens; Hemperek, Tomasz; Huegging, Fabian; Wermes, Norbert [Physikalisches Institut der Univeristaet Bonn (Germany)

2015-07-01

The ATLAS FE-I4 pixel readout chip is a large (2 x 2 cm{sup 2}) state of the art ASIC used in high energy physics experiments as well as for research and development purposes. While the FE-I4 is optimized for high hit rates it provides very limited charge resolution. Therefore two methods were developed to obtain high resolution single pixel charge spectra with the ATLAS FE-I4. The first method relies on the ability to change the detection threshold in small steps while counting hits from a particle source and has a resolution limited by electronic noise only. The other method uses a FPGA based time-to-digital-converter to digitize the analog charge signal with high precision. The feasibility, performance and challenges of these methods are discussed. First results of sensor characterizations from radioactive sources and test beams with the ATLAS FE-I4 in view of the charge collection efficiency after irradiation are presented.

ATLAS and ultra high energy cosmic ray physics

Directory of Open Access Journals (Sweden)

Pinfold James

2017-01-01

Full Text Available After a brief introduction to extended air shower cosmic ray physics the current and future deployment of forward detectors at ATLAS is discussed along with the various aspects of the current and future ATLAS programs to explore hadronic physics. The emphasis is placed on those results and future plans that have particular relevance for high-energy, and ultra high-energy, cosmic ray physics. The possible use of ATLAS as an “underground” cosmic muon observatory is briefly considered.

A System for Monitoring and Tracking the LHC Beam Spot within the ATLAS High Level Trigger

CERN Document Server

Bartoldus, R; The ATLAS collaboration; Cogan, J; Salnikov, A; Strauss, E; Winklmeier, F

2012-01-01

The parameters of the beam spot produced by the LHC in the ATLAS interaction region are computed online using the ATLAS High Level Trigger (HLT) system. The high rate of triggered events is exploited to make precise measurements of the position, size and orientation of the luminous region in near real-time, as these parameters change significantly even during a single data-taking run. We present the challenges, solutions and results for the online determination, monitoring and beam spot feedback system in ATLAS. A specially designed algorithm, which uses tracks registered in the silicon detectors to reconstruct event vertices, is executed on the HLT processor farm of several thousand CPU cores. Monitoring histograms from all the cores are sampled and aggregated across the farm every 60 seconds. The reconstructed beam values are corrected for detector resolution effects, measured in situ from the separation of vertices whose tracks have been split into two collections. Furthermore, measurements for individual ...

A brain MRI atlas of the common squirrel monkey, Saimiri sciureus

Science.gov (United States)

Gao, Yurui; Schilling, Kurt G.; Khare, Shweta P.; Panda, Swetasudha; Choe, Ann S.; Stepniewska, Iwona; Li, Xia; Ding, Zhoahua; Anderson, Adam; Landman, Bennett A.

2014-03-01

The common squirrel monkey, Saimiri sciureus, is a New World monkey with functional and microstructural organization of central nervous system similar to that of humans. It is one of the most commonly used South American primates in biomedical research. Unlike its Old World macaque cousins, no digital atlases have described the organization of the squirrel monkey brain. Here, we present a multi-modal magnetic resonance imaging (MRI) atlas constructed from the brain of an adult female squirrel monkey. In vivo MRI acquisitions include high resolution T2 structural imaging and low resolution diffusion tensor imaging. Ex vivo MRI acquisitions include high resolution T2 structural imaging and high resolution diffusion tensor imaging. Cortical regions were manually annotated on the co-registered volumes based on published histological sections.

Variable resolution Associative Memory use and optimization for the Fast Tracker ATLAS upgrade

CERN Document Server

Annovi, A; The ATLAS collaboration; Giannetti, P; Luongo, C; Pandini, C; Volpi, G

2013-01-01

The most recent prototype of the Associative Memory (AM) chip developed for the ATLAS Fast Tracker includes ternary logic cells that can store 0, 1, or "don't care" values. This allows an enormous flexibility, with the possibility to program the precision of the spatial coincidence for each pattern and for each detector layer. We call this use of the associative memory: "variable resolution pattern recognition". A technique that can be applied to any coincidence based trigger. We describe an advanced technique to build the bank of patterns for the associative memory. Full resolution patterns are merged and split (profiting of variable resolution) to obtain the optimal set of patterns that fits in a given AM size while providing the best rejection of random coincidences without loss in efficiency.

Muon reconstruction efficiency and momentum resolution of the ATLAS experiment in proton-proton collisions at √s = 7 TeV in 2010.

Czech Academy of Sciences Publication Activity Database

Aad, G.; Abajyan, T.; Abbott, B.; Böhm, Jan; Chudoba, Jiří; Hejbal, Jiří; Jakoubek, Tomáš; Kepka, Oldřich; Kupčo, Alexander; Kůs, Vlastimil; Lokajíček, Miloš; Lysák, Roman; Marčišovský, Michal; Mikeštíková, Marcela; Myška, Miroslav; Němeček, Stanislav; Růžička, P.; Schovancová, J.; Šícho, Petr; Staroba, Pavel; Svatoš, Michal; Taševský, Marek; Tic, Tomáš; Vrba, Václav

2014-01-01

Roč. 74, č. 9 (2014), s. 1-32 ISSN 1434-6044 R&D Projects: GA MŠk(CZ) LG13009 Institutional support: RVO:68378271 Keywords : p p * scattering * Z0 * leptonic decay * performance * muon * particle identification * momentum resolution * efficiency * ATLAS * CERN LHC Coll * Monte Carlo Subject RIV: BF - Elementary Particles and High Energy Physics Impact factor: 5.084, year: 2014

Results from the Commissioning of the ATLAS Pixel Detector

CERN Document Server

Strandberg, S

2009-01-01

The ATLAS pixel detector is a high resolution, silicon based, tracking detector with its innermost layer located only 5 cm away from the ATLAS interaction point. It is designed to provide good hit resolution and low noise, both important qualities for pattern recognition and for finding secondary vertices originating from decays of long-lived particles. The pixel detector has 80 million readout channels and is built up of three barrel layers and six disks, three on each side of the barrel. The detector was installed in the center of ATLAS in June 2007 and is currently being calibrated and commissioned. Details from the installation, commissioning and calibration are presented together with the current status.

A 3D high resolution ex vivo white matter atlas of the common squirrel monkey (Saimiri sciureus) based on diffusion tensor imaging.

Science.gov (United States)

Gao, Yurui; Parvathaneni, Prasanna; Schilling, Kurt G; Wang, Feng; Stepniewska, Iwona; Xu, Zhoubing; Choe, Ann S; Ding, Zhaohua; Gore, John C; Chen, Li Min; Landman, Bennett A; Anderson, Adam W

2016-02-27

Modern magnetic resonance imaging (MRI) brain atlases are high quality 3-D volumes with specific structures labeled in the volume. Atlases are essential in providing a common space for interpretation of results across studies, for anatomical education, and providing quantitative image-based navigation. Extensive work has been devoted to atlas construction for humans, macaque, and several non-primate species (e.g., rat). One notable gap in the literature is the common squirrel monkey - for which the primary published atlases date from the 1960's. The common squirrel monkey has been used extensively as surrogate for humans in biomedical studies, given its anatomical neuro-system similarities and practical considerations. This work describes the continued development of a multi-modal MRI atlas for the common squirrel monkey, for which a structural imaging space and gray matter parcels have been previously constructed. This study adds white matter tracts to the atlas. The new atlas includes 49 white matter (WM) tracts, defined using diffusion tensor imaging (DTI) in three animals and combines these data to define the anatomical locations of these tracks in a standardized coordinate system compatible with previous development. An anatomist reviewed the resulting tracts and the inter-animal reproducibility (i.e., the Dice index of each WM parcel across animals in common space) was assessed. The Dice indices range from 0.05 to 0.80 due to differences of local registration quality and the variation of WM tract position across individuals. However, the combined WM labels from the 3 animals represent the general locations of WM parcels, adding basic connectivity information to the atlas.

A 3D high resolution ex vivo white matter atlas of the common squirrel monkey (saimiri sciureus) based on diffusion tensor imaging

Science.gov (United States)

Gao, Yurui; Parvathaneni, Prasanna; Schilling, Kurt G.; Wang, Feng; Stepniewska, Iwona; Xu, Zhoubing; Choe, Ann S.; Ding, Zhaohua; Gore, John C.; Chen, Li min; Landman, Bennett A.; Anderson, Adam W.

2016-03-01

Modern magnetic resonance imaging (MRI) brain atlases are high quality 3-D volumes with specific structures labeled in the volume. Atlases are essential in providing a common space for interpretation of results across studies, for anatomical education, and providing quantitative image-based navigation. Extensive work has been devoted to atlas construction for humans, macaque, and several non-primate species (e.g., rat). One notable gap in the literature is the common squirrel monkey - for which the primary published atlases date from the 1960's. The common squirrel monkey has been used extensively as surrogate for humans in biomedical studies, given its anatomical neuro-system similarities and practical considerations. This work describes the continued development of a multi-modal MRI atlas for the common squirrel monkey, for which a structural imaging space and gray matter parcels have been previously constructed. This study adds white matter tracts to the atlas. The new atlas includes 49 white matter (WM) tracts, defined using diffusion tensor imaging (DTI) in three animals and combines these data to define the anatomical locations of these tracks in a standardized coordinate system compatible with previous development. An anatomist reviewed the resulting tracts and the inter-animal reproducibility (i.e., the Dice index of each WM parcel across animals in common space) was assessed. The Dice indices range from 0.05 to 0.80 due to differences of local registration quality and the variation of WM tract position across individuals. However, the combined WM labels from the 3 animals represent the general locations of WM parcels, adding basic connectivity information to the atlas.

A Silicon Strip Detector for the Phase II High Luminosity Upgrade of the ATLAS Detector at the Large Hadron Collider

CERN Document Server

INSPIRE-00425747; McMahon, Stephen J

2015-01-01

ATLAS is a particle physics experiment at the Large Hadron Collider (LHC) that detects proton-proton collisions at a centre of mass energy of 14 TeV. The Semiconductor Tracker is part of the Inner Detector, implemented using silicon microstrip detectors with binary read-out, providing momentum measurement of charged particles with excellent resolution. The operation of the LHC and the ATLAS experiment started in 2010, with ten years of operation expected until major upgrades are needed in the accelerator and the experiments. The ATLAS tracker will need to be completely replaced due to the radiation damage and occupancy of some detector elements and the data links at high luminosities. These upgrades after the first ten years of operation are named the Phase-II Upgrade and involve a re-design of the LHC, resulting in the High Luminosity Large Hadron Collider (HL-LHC). This thesis presents the work carried out in the testing of the ATLAS Phase-II Upgrade electronic systems in the future strips tracker a...

A High Granularity Timing Detector for the ATLAS Experiment at LHC, CERN

CERN Document Server

Mallik, Usha; The ATLAS collaboration

2018-01-01

A High Granularity Timing Detector of ~30 psec resolution is undertaken by the ATLAS Collaboration for the Phase-II hi-luminosity upgrade, where a pile-up of up to 200 is expected. To improve the overall discriminating ability for the hard scattering events, the additional dimension of precise timing is used in conjunction with the precision position measurements of the Inner Tracking Detectors at high pseudorapidity. The overall effect is to be able to make effective use of the higher beam intensities. Very good progress has been achieved thus far in all aspects; these are discussed with future milestones.

Avoiding pitfalls in molecular genetic testing: case studies of high-resolution array comparative genomic hybridization testing in the definitive diagnosis of Mowat-Wilson syndrome.

Science.gov (United States)

Kluk, Michael Joseph; An, Yu; James, Philip; Coulter, David; Harris, David; Wu, Bai-Lin; Shen, Yiping

2011-05-01

The molecular testing options available for the diagnosis of genetic disorders are numerous and include a variety of different assay platforms. The consultative input of molecular pathologists and cytogeneticists, working closely with the ordering clinicians, is often important for definitive diagnosis. Herein, we describe two patients who had long histories of unexplained signs and symptoms with a high clinical suspicion of an underlying genetic etiology. Initial molecular testing in both cases was negative, but the application of high-resolution array comparative genomic hybridization technology lead to definitive diagnosis in both cases. We summarize the clinical findings and molecular testing in each case, discuss the differential diagnoses, and review the clinical and pathological findings of Mowat-Wilson syndrome. This report highlights the importance for those involved in molecular testing to know the nature of the underlying genetic abnormalities associated with the suspected diagnosis, to recognize the limitations of each testing platform, and to persistently pursue repeat testing using high-resolution technologies when indicated. This concept is applicable to both germline and somatic molecular genetic testing. Copyright © 2011 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.

A novel high resolution and high efficiency dual head detector for molecular breast imaging: New results from clinical trials

Energy Technology Data Exchange (ETDEWEB)

Garibaldi, F., E-mail: franco.garibaldi@iss.infn.i [ISS and INFN Roma, gr. Sanita, Rome (Italy); Cisbani, E.; Colilli, S.; Cusanno, F.; Fratoni, R.; Giuliani, F.; Gricia, M.; Lucentini, M.; Magliozzi, M.L.; Santavenere, F.; Torrioli, S. [ISS and INFN Roma, gr. Sanita, Rome (Italy); Musico, P. [INFN Genova, Genova (Italy); Argentieri, A. [INFN Bari, Bari (Italy); Cossu, E.; Padovano, F.; Simonetti, G. [ISS and INFN Roma, gr. Sanita, Rome (Italy); Schillaci, O. [University of Tor Vergata, Rome (Italy); Majewski, S. [West Virginia University, Morgantown, West Virginia (United States)

2010-05-21

Detecting small breast tumors is a challenging task. Molecular Breast Imaging with radionuclides has a central role to play in this respect. Our group has recently designed and implemented a dual detector setup that allows spot compression and improves significantly the performance of the system. The single head detector has been successfully used for clinical trials with 10 patients in comparison with a commercial high resolution detector. Then the dual head system has been showed to have significant advantages for the detection of small tumors.

A new Highly Selective First Level ATLAS Muon Trigger With MDT Chamber Data for HL-LHC

CERN Document Server

Nowak, Sebastian; The ATLAS collaboration

2015-01-01

Highly selective first level triggers are essential for the physics programme of the ATLAS experiment at the HL-LHC where the instantaneous luminosity will exceed the LHC's instantaneous luminosity by almost an order of magnitude. The ATLAS first level muon trigger rate is dominated by low momentum sub-trigger threshold muons due to the poor momentum resolution at trigger level caused by the moderate spatial resolution of the resistive plate and thin gap trigger chambers. This limitation can be overcome by including the data of the precision muon drift tube chambers in the first level trigger decision. This requires the implementation of a fast MDT read-out chain and a fast MDT track reconstruction. A hardware demonstrator of the fast read-out chain was successfully tested under HL-LHC operating conditions at CERN's Gamma Irradiation Facility. It could be shown that the data provided by the demonstrator can be processed with a fast track reconstruction algorithm on an ARM CPU within the 6 microseconds latency...

Fluorine determination in coal using high-resolution graphite furnace molecular absorption spectrometry and direct solid sample analysis

Energy Technology Data Exchange (ETDEWEB)

Machado, Patrícia M.; Morés, Silvane; Pereira, Éderson R. [Departamento de Química, Universidade Federal de Santa Catarina, 88040-900 Florianópolis, SC (Brazil); Welz, Bernhard, E-mail: w.bernardo@terra.com.br [Departamento de Química, Universidade Federal de Santa Catarina, 88040-900 Florianópolis, SC (Brazil); Instituto Nacional de Ciência e Tecnologia do CNPq, INCT de Energia e Ambiente, Universidade Federal da Bahia, 40170-115 Salvador, BA (Brazil); Carasek, Eduardo [Departamento de Química, Universidade Federal de Santa Catarina, 88040-900 Florianópolis, SC (Brazil); Andrade, Jailson B. de [Instituto Nacional de Ciência e Tecnologia do CNPq, INCT de Energia e Ambiente, Universidade Federal da Bahia, 40170-115 Salvador, BA (Brazil)

2015-03-01

The absorption of the calcium mono-fluoride (CaF) molecule has been employed in this study for the determination of fluorine in coal using direct solid sample analysis and high-resolution continuum source graphite furnace molecular absorption spectrometry (HR-CS GF MAS). The rotational line at 606.440 nm was used for measuring the molecular absorption in the gas phase. The pyrolysis and vaporization temperatures were 700 °C and 2100 °C, respectively. Different chemical modifiers have been studied, such as Pd and Ir as permanent modifiers, and Pd and the mixed Pd/Mg modifier in solution. The limit of detection and the characteristic mass were 0.3 and 0.1 ng F, respectively. One certified reference material (CRM) of coal (NIST 1635) and four CRMs with a non-certified value for F (SARM 18, SARM 20, BCR 40, BCR 180) were used to evaluate the accuracy and precision of the method, obtaining good agreement (104%) with the certified value and with the informed values (ranging from 90 to 103%). - Highlights: • High-resolution Graphite Furnace Molecular Absorption Spectrometry (HR-GF MAS) • Fluorine has been determined using HR-GF MAS of the CaF molecule. • The CaF molecule was generated in a graphite furnace at a temperature of 2100 °C • Coal samples have been analyzed using direct solid sample introduction. • Aqueous standard solutions have been used for calibration.

High-Resolution Electron-Impact Study of the Far-Ultraviolet Emission Spectrum of Molecular Hydrogen

Science.gov (United States)

Liu, Xian-Ming; Ahmed, Syed M.; Multari, Rosalie A.; James, Geoffrey K.; Ajello, Joseph M.

1995-01-01

The emission spectrum of molecular hydrogen produced by electron-impact excitation at 100 eV has been measured in the wavelength range 1140-1690 A. High-resolution, optically thin spectra (delta(lambda) = 0.136 A) of the far-ultraviolet (FUV) Lyman and Werner band systems have been obtained with a newly constructed 3 m spectrometer. Synthetic spectral intensities based on the transition probabilities calculated by Abgrall et al. are in very good agreement with experimentally observed intensities. Previous modeling that utilized Allison & Daigarno band transition probabilities with Hoenl-London factors breaks down when the transition moment has significant J dependence or when ro-vibrational coupling is significant. Ro-vibrational perturbation between upsilon = 14 of the B(sup 1)Sigma(sup +, sub u) state and upsilon = 3 of the C(sup 1)Pi(sub u) state and the rotational dependence of the transition moment in the bands of the Lyman system are examined. Complete high-resolution experimental reference FUV spectra, together with the model synthetic spectra based on the Abgrall transition probabilities, are presented. An improved calibration standard is obtained, and an accurate calibration of the 3 m spectrometer has been achieved.

High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter

Directory of Open Access Journals (Sweden)

Daniel Petras

2017-12-01

Full Text Available Dissolved organic matter (DOM is arguably one of the most complex exometabolomes on earth, and is comprised of thousands of compounds, that together contribute more than 600 × 1015 g carbon. This reservoir is primarily the product of interactions between the upper ocean's microbial food web, yet abiotic processes that occur over millennia have also modified many of its molecules. The compounds within this reservoir play important roles in determining the rate and extent of element exchange between inorganic reservoirs and the marine biosphere, while also mediating microbe-microbe interactions. As such, there has been a widespread effort to characterize DOM using high-resolution analytical methods including nuclear magnetic resonance spectroscopy (NMR and mass spectrometry (MS. To date, molecular information in DOM has been primarily obtained through calculated molecular formulas from exact mass. This approach has the advantage of being non-targeted, accessing the inherent complexity of DOM. Molecular structures are however still elusive and the most commonly used instruments are costly. More recently, tandem mass spectrometry has been employed to more precisely identify DOM components through comparison to library mass spectra. Here we describe a data acquisition and analysis workflow that expands the repertoire of high-resolution analytical approaches available to access the complexity of DOM molecules that are amenable to electrospray ionization (ESI MS. We couple liquid chromatographic separation with tandem MS (LC-MS/MS and a data analysis pipeline, that integrates peak extraction from extracted ion chromatograms (XIC, molecular formula calculation and molecular networking. This provides more precise structural characterization. Although only around 1% of detectable DOM compounds can be annotated through publicly available spectral libraries, community-wide participation in populating and annotating DOM datasets could rapidly increase the

High-resolution monitoring of marine protists based on an observation strategy integrating automated on-board filtration and molecular analyses

Science.gov (United States)

Metfies, Katja; Schroeder, Friedhelm; Hessel, Johanna; Wollschläger, Jochen; Micheller, Sebastian; Wolf, Christian; Kilias, Estelle; Sprong, Pim; Neuhaus, Stefan; Frickenhaus, Stephan; Petersen, Wilhelm

2016-11-01

Information on recent biomass distribution and biogeography of photosynthetic marine protists with adequate temporal and spatial resolution is urgently needed to better understand the consequences of environmental change for marine ecosystems. Here we introduce and review a molecular-based observation strategy for high-resolution assessment of these protists in space and time. It is the result of extensive technology developments, adaptations and evaluations which are documented in a number of different publications, and the results of the recently completed field testing which are introduced in this paper. The observation strategy is organized at four different levels. At level 1, samples are collected at high spatiotemporal resolution using the remotely controlled automated filtration system AUTOFIM. Resulting samples can either be preserved for later laboratory analyses, or directly subjected to molecular surveillance of key species aboard the ship via an automated biosensor system or quantitative polymerase chain reaction (level 2). Preserved samples are analyzed at the next observational levels in the laboratory (levels 3 and 4). At level 3 this involves molecular fingerprinting methods for a quick and reliable overview of differences in protist community composition. Finally, selected samples can be used to generate a detailed analysis of taxonomic protist composition via the latest next generation sequencing technology (NGS) at level 4. An overall integrated dataset of the results based on the different analyses provides comprehensive information on the diversity and biogeography of protists, including all related size classes. At the same time the cost of the observation is optimized with respect to analysis effort and time.

Arctide2017, a high-resolution regional tidal model in the Arctic Ocean

DEFF Research Database (Denmark)

Cancet, M.; Andersen, O. B.; Lyard, F.

2018-01-01

The Arctic Ocean is a challenging region for tidal modelling. The accuracy of the global tidal models decreases by several centimeters in the Polar Regions, which has a large impact on the quality of the satellite altimeter sea surface heights and the altimetry-derived products. NOVELTIS, DTU Space...... and LEGOS have developed Arctide2017, a regional, high-resolution tidal atlas in the Arctic Ocean, in the framework of an extension of the CryoSat Plus for Ocean (CP4O) ESA STSE (Support to Science Element) project. In particular, this atlas benefits from the assimilation of the most complete satellite...... assimilation and validation. This paper presents the implementation methodology and the performance of this new regional tidal model in the Arctic Ocean, compared to the existing global and regional tidal models....

The Human Cell Atlas.

Science.gov (United States)

Regev, Aviv; Teichmann, Sarah A; Lander, Eric S; Amit, Ido; Benoist, Christophe; Birney, Ewan; Bodenmiller, Bernd; Campbell, Peter; Carninci, Piero; Clatworthy, Menna; Clevers, Hans; Deplancke, Bart; Dunham, Ian; Eberwine, James; Eils, Roland; Enard, Wolfgang; Farmer, Andrew; Fugger, Lars; Göttgens, Berthold; Hacohen, Nir; Haniffa, Muzlifah; Hemberg, Martin; Kim, Seung; Klenerman, Paul; Kriegstein, Arnold; Lein, Ed; Linnarsson, Sten; Lundberg, Emma; Lundeberg, Joakim; Majumder, Partha; Marioni, John C; Merad, Miriam; Mhlanga, Musa; Nawijn, Martijn; Netea, Mihai; Nolan, Garry; Pe'er, Dana; Phillipakis, Anthony; Ponting, Chris P; Quake, Stephen; Reik, Wolf; Rozenblatt-Rosen, Orit; Sanes, Joshua; Satija, Rahul; Schumacher, Ton N; Shalek, Alex; Shapiro, Ehud; Sharma, Padmanee; Shin, Jay W; Stegle, Oliver; Stratton, Michael; Stubbington, Michael J T; Theis, Fabian J; Uhlen, Matthias; van Oudenaarden, Alexander; Wagner, Allon; Watt, Fiona; Weissman, Jonathan; Wold, Barbara; Xavier, Ramnik; Yosef, Nir

2017-12-05

The recent advent of methods for high-throughput single-cell molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe to complete the 150-year-old effort to identify all cell types in the human body. The Human Cell Atlas Project is an international collaborative effort that aims to define all human cell types in terms of distinctive molecular profiles (such as gene expression profiles) and to connect this information with classical cellular descriptions (such as location and morphology). An open comprehensive reference map of the molecular state of cells in healthy human tissues would propel the systematic study of physiological states, developmental trajectories, regulatory circuitry and interactions of cells, and also provide a framework for understanding cellular dysregulation in human disease. Here we describe the idea, its potential utility, early proofs-of-concept, and some design considerations for the Human Cell Atlas, including a commitment to open data, code, and community.

Baby brain atlases.

Science.gov (United States)

Oishi, Kenichi; Chang, Linda; Huang, Hao

2018-04-03

The baby brain is constantly changing due to its active neurodevelopment, and research into the baby brain is one of the frontiers in neuroscience. To help guide neuroscientists and clinicians in their investigation of this frontier, maps of the baby brain, which contain a priori knowledge about neurodevelopment and anatomy, are essential. "Brain atlas" in this review refers to a 3D-brain image with a set of reference labels, such as a parcellation map, as the anatomical reference that guides the mapping of the brain. Recent advancements in scanners, sequences, and motion control methodologies enable the creation of various types of high-resolution baby brain atlases. What is becoming clear is that one atlas is not sufficient to characterize the existing knowledge about the anatomical variations, disease-related anatomical alterations, and the variations in time-dependent changes. In this review, the types and roles of the human baby brain MRI atlases that are currently available are described and discussed, and future directions in the field of developmental neuroscience and its clinical applications are proposed. The potential use of disease-based atlases to characterize clinically relevant information, such as clinical labels, in addition to conventional anatomical labels, is also discussed. Copyright © 2018. Published by Elsevier Inc.

Molecular Alterations of TP53 are a Defining Feature of Ovarian High-Grade Serous Carcinoma: A Rereview of Cases Lacking TP53 Mutations in The Cancer Genome Atlas Ovarian Study.

Science.gov (United States)

Vang, Russell; Levine, Douglas A; Soslow, Robert A; Zaloudek, Charles; Shih, Ie-Ming; Kurman, Robert J

2016-01-01

The Cancer Genome Atlas has reported that 96% of ovarian high-grade serous carcinomas (HGSCs) have TP53 somatic mutations suggesting that mutation of this gene is a defining feature of this neoplasm. In the current study, 5 gynecologic pathologists independently evaluated hematoxylin and eosin slides of 14 available cases from The Cancer Genome Atlas classified as HGSC that lacked a TP53 mutation. The histologic diagnoses rendered by these pathologists and the accompanying molecular genetic data are the subject of this report. Only 1 case (Case 5), which contained a homozygous deletion of TP53, had unanimous interobserver agreement for a diagnosis of pure HGSC. In 1 case (Case 3), all 5 observers (100%) rendered a diagnosis of HGSC; however, 3 observers (60%) noted that the histologic features were not classic for HGSC and suggested this case may have arisen from a low-grade serous carcinoma (arisen from an alternate pathway compared with the usual HGSC). In 2 cases (Cases 4 and 12), only 3 observers (60%) in each case, respectively, interpreted it as having a component of HGSC. In the remaining 10 (71%) of tumors (Cases 1, 2, 6-11, 13, and 14), the consensus diagnosis was not HGSC, with individual diagnoses including low-grade serous carcinoma, high-grade endometrioid carcinoma, HGSC, metastatic carcinoma, clear cell carcinoma, atypical proliferative (borderline) serous tumor, and adenocarcinoma, not otherwise specified. Therefore, 13 (93%) of the tumors (Cases 1-4 and 6-14) were either not a pure HGSC or represented a diagnosis other than HGSC, all with molecular results not characteristic of HGSC. Accordingly, our review of the TP53 wild-type HGSCs reported in The Cancer Genome Atlas suggests that 100% of de novo HGSCs contain TP53 somatic mutations or deletions, with the exception of the rare HGSCs that develop from a low-grade serous tumor precursor. We, therefore, propose that lack of molecular alterations of TP53 are essentially inconsistent with the

High-performance scalable Information Service for the ATLAS experiment

CERN Document Server

Kolos, S; The ATLAS collaboration; Hauser, R

2012-01-01

The ATLAS experiment is being operated by highly distributed computing system which is constantly producing a lot of status information which is used to monitor the experiment operational conditions as well as to access the quality of the physics data being taken. For example the ATLAS High Level Trigger(HLT) algorithms are executed on the online computing farm consisting from about 1500 nodes. Each HLT algorithm is producing few thousands histograms, which have to be integrated over the whole farm and carefully analyzed in order to properly tune the event rejection. In order to handle such non-physics data the Information Service (IS) facility has been developed in the scope of the ATLAS TDAQ project. The IS provides high-performance scalable solution for information exchange in distributed environment. In the course of an ATLAS data taking session the IS handles about hundred gigabytes of information which is being constantly updated with the update interval varying from a second to few tens of seconds. IS ...

Highly Parallelized Pattern Matching Execution for the ATLAS Experiment

CERN Document Server

Citraro, Saverio; The ATLAS collaboration

2015-01-01

Abstract– The Associative Memory (AM) system of the Fast Tracker (FTK) processor has been designed to perform pattern matching using as input the data from the silicon tracker in the ATLAS experiment. The AM is the primary component of the FTK system and is designed using ASIC technology (the AM chip) to execute pattern matching with a high degree of parallelism. The FTK system finds track candidates at low resolution that are seeds for a full resolution track fitting. The AM system implementation is named “Serial Link Processor” and is based on an extremely powerful network of 2 Gb/s serial links to sustain a huge traffic of data. This paper reports on the design of the Serial Link Processor consisting of two types of boards, the Little Associative Memory Board (LAMB), a mezzanine where the AM chips are mounted, and the Associative Memory Board (AMB), a 9U VME motherboard which hosts four LAMB daughterboards. We also report on the performance of the prototypes (both hardware and firmware) produced and ...

Pocket atlas of cranial magnetic resonance imaging

International Nuclear Information System (INIS)

Haughton, V.M.; Daniels, D.L.

1986-01-01

This atlas illustrates normal cerebral anatomy in magnetic resonance images. From their studies in cerebral anatomy utilizing cryomicrotome and other techniques, the authors selected more than 100 high-resolution images that represent the most clinically useful scans

Electron Energy Resolution of the ATLAS TILECAL Modules with Flat Filter Method (July 2002 test beam)

CERN Document Server

Kulchitskii, Yu A; Vinogradov, V B

2005-01-01

The constructed ATLAS detector at the LHC will have the great physics discovery potential, in particular in the detection of a heavy Higgs boson. Calorimeters will play a crucial role in it. It is necessary to have confidence that the calorimeters will perform as expected. With the aim of understanding of performance of the ATLAS Tile hadronic calorimeter to electrons 12\\% of modules have been exposed in electron beams with various energies by three possible ways: cell-scan at $\\theta =20^o$ at the centers of the front face cells, $\\eta$-scan and tilerow scan at $\\theta = 90^o$ for the module side cells. We have extracted the electron energy resolutions of the $EBM-$ (ANL-44), $EBM+$ (IFA-42) and $BM$ (JINR-55) Modules of the ATLAS Tile Calorimeter at energies E = 10, 20, 50, 100 and 180 GeV and $\\theta = 20^o$ and $90^o $ and $\\eta$ scan from the July 2002 testbeam run data using the flat filter method of the PMT signal reconstruction. We have determined the statistical and constant terms for the electron en...

Electron Energy Resolution of the ATLAS TILECAL Modules with Fit Filter Method (July 2002 test beam)

CERN Document Server

Kulchitskii, Yu A; Vinogradov, V B

2006-01-01

The constructed ATLAS detector at the LHC will have the great physics discovery potential, in particular in the detection of a heavy Higgs boson. Calorimeters will play a crucial role in it. It is necessary to have confidence that the calorimeters will perform as expected. With the aim of understanding of performance of the ATLAS Tile hadronic calorimeter to electrons 12\\% of modules have been exposed in electron beams with various energies by three possible ways: cell-scan at $\\theta =20^o$ at the centers of the front face cells, $\\eta$-scan and tilerow scan at $\\theta = 90^o$ for the module side cells. We have extracted the electron energy resolutions of the $EBM-$ (ANL-44), $EBM+$ (IFA-42) and $BM$ (JINR-55) Modules of the ATLAS Tile Calorimeter at energies E = 10, 20, 50, 100 and 180 GeV and $\\theta = 20^o$ and $90^o $ and $\\eta$ scan from the July 2002 testbeam run data using the fit filter method of the PMT signal reconstruction. We have determined the statistical and constant terms for the electron ene...

High sensitivity optical molecular imaging system

Science.gov (United States)

An, Yu; Yuan, Gao; Huang, Chao; Jiang, Shixin; Zhang, Peng; Wang, Kun; Tian, Jie

2018-02-01

Optical Molecular Imaging (OMI) has the advantages of high sensitivity, low cost and ease of use. By labeling the regions of interest with fluorescent or bioluminescence probes, OMI can noninvasively obtain the distribution of the probes in vivo, which play the key role in cancer research, pharmacokinetics and other biological studies. In preclinical and clinical application, the image depth, resolution and sensitivity are the key factors for researchers to use OMI. In this paper, we report a high sensitivity optical molecular imaging system developed by our group, which can improve the imaging depth in phantom to nearly 5cm, high resolution at 2cm depth, and high image sensitivity. To validate the performance of the system, special designed phantom experiments and weak light detection experiment were implemented. The results shows that cooperated with high performance electron-multiplying charge coupled device (EMCCD) camera, precision design of light path system and high efficient image techniques, our OMI system can simultaneously collect the light-emitted signals generated by fluorescence molecular imaging, bioluminescence imaging, Cherenkov luminance and other optical imaging modality, and observe the internal distribution of light-emitting agents fast and accurately.

The ATLAS online High Level Trigger framework experience reusing offline software components in the ATLAS trigger

CERN Document Server

Wiedenmann, W

2009-01-01

Event selection in the Atlas High Level Trigger is accomplished to a large extent by reusing software components and event selection algorithms developed and tested in an offline environment. Many of these offline software modules are not specifically designed to run in a heavily multi-threaded online data flow environment. The Atlas High Level Trigger (HLT) framework based on the Gaudi and Atlas Athena frameworks, forms the interface layer, which allows the execution of the HLT selection and monitoring code within the online run control and data flow software. While such an approach provides a unified environment for trigger event selection across all of Atlas, it also poses strict requirements on the reused software components in terms of performance, memory usage and stability. Experience of running the HLT selection software in the different environments and especially on large multi-node trigger farms has been gained in several commissioning periods using preloaded Monte Carlo events, in data taking peri...

ATLAS Pixel Detector Operational Experience

CERN Document Server

Di Girolamo, B; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 96.9% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

A new high resolution tidal model in the arctic ocean

DEFF Research Database (Denmark)

Cancet, M.; Andersen, Ole Baltazar; Lyard, F.

The Arctic Ocean is a challenging region for tidal modeling, because of its complex and not well-documented bathymetry, together combined with the intermittent presence of sea ice and the fact that the in situ tidal observations are rather scarce at such high latitudes. As a consequence, the accu......The Arctic Ocean is a challenging region for tidal modeling, because of its complex and not well-documented bathymetry, together combined with the intermittent presence of sea ice and the fact that the in situ tidal observations are rather scarce at such high latitudes. As a consequence......, the accuracy of the global tidal models decreases by several centimeters in the Polar Regions. In particular, it has a large impact on the quality of the satellite altimeter sea surface heights in these regions (ERS1/2, Envisat, CryoSat-2, SARAL/AltiKa and the future Sentinel-3 mission). Better knowledge......-growing maritime and industrial activities in this region. NOVELTIS and DTU Space have developed a regional, high-resolution tidal atlas in the Arctic Ocean, in the framework of the CryoSat Plus for Ocean (CP4O) ESA project. In particular, this atlas benefits from the assimilation of the most complete satellite...

Evaluation of an assimilation scheme to estimate snow water equivalent in the High Atlas of Morocco.

Science.gov (United States)

Baba, W. M.; Baldo, E.; Gascoin, S.; Margulis, S. A.; Cortés, G.; Hanich, L.

2017-12-01

The snow melt from the Atlas mountains represents a crucial water resource for crop irrigation in Morocco. Due to the paucity of in situ measurements, and the high spatial variability of the snow cover in this semi-arid region, assimilation of snow cover area (SCA) from high resolution optical remote sensing into a snowpack energy-balance model is considered as a promising method to estimate the snow water equivalent (SWE) and snow melt at catchment scales. Here we present a preliminary evaluation of an uncalibrated particle batch smoother data assimilation scheme (Margulis et al., 2015, J. Hydrometeor., 16, 1752-1772) in the High-Atlas Rheraya pilot catchment (225 km2) over a snow season. This approach does not require in situ data since it is based on MERRA-2 reanalyses data and satellite fractional snow cover area data. We compared the output of this prior/posterior ensemble data assimilation system to output from the distributed snowpack evolution model SnowModel (Liston and Elder, 2006, J. Hydrometeor. 7, 1259-1276). SnowModel was forced with in situ meteorological data from five automatic weather stations (AWS) and some key parameters (precipitation correction factor and rain-snow phase transition parameters) were calibrated using a time series of 8-m resolution SCA maps from Formosat-2. The SnowModel simulation was validated using a continuous snow height record at one high elevation AWS. The results indicate that the open loop simulation was reasonably accurate (compared to SnowModel results) in spite of the coarse resolution of the MERRA-2 forcing. The assimilation of Formosat-2 SCA further improved the simulation in terms of the peak SWE and SWE evolution over the melt season. During the accumulation season, the differences between the modeled and estimated (posterior) SWE were more substantial. The differences appear to be due to some observed precipitation events not being captured in MERRA-2. Further investigation will determine whether additional

Probing Conditions at Ionized/Molecular Gas Interfaces With High Resolution Near-Infrared Spectroscopy

Science.gov (United States)

Kaplan, Kyle Franklin

2017-08-01

Regions of star formation and star death in our Galaxy trace the cycle of gas and dust in the interstellar medium (ISM). Gas in dense molecular clouds collapses to form stars, and stars at the end of their lives return the gas that made up their outer layers back out into the Galaxy. Hot stars generate copious amounts of ultraviolet photons which interact with the surrounding medium and dominate the energetics, ionization state, and chemistry of the gas. The interface where molecular gas is being dissociated into neutral atomic gas by far-UV photons from a nearby hot source is called a photodissociation or photon-dominated region (PDR). PDRs are found primarily in star forming regions where O and B stars serve as the source of UV photons, and in planetary nebulae where the hot core of the dying star acts as the UV source. The main target of this dissertation is molecular hydrogen (H2), the most abundant molecule in the Universe, made from hydrogen formed during the Big Bang. H2 makes up the overwhelming majority of molecules found in the ISM and in PDRs. Far-UV radiation absorbed by H2 will excite an electron in the molecule. The molecule then either dissociates ( 10% of the time; Field et al. 1966) or decays into excited rotational and vibrational ("rovibrational") levels of the electronic ground state. These excited rovibrational levels then decay via a radiative cascade to the ground rovibrational state (v = 0, J = 0), giving rise to a large number of transitions observable in emission from the mid-IR to the optical (Black & van Dishoeck, 1987). These transitions provide an excellent probe of the excitation and conditions within the gas. These transitions are also observed in warm H2, such as in shocks, where collisions excite H2 to higher rovibrational levels. High resolution near-infrared spectroscopy, with its ability to see through dust, and avoid telluric absorption and emission, serves as an effective tool to detect emission from ions, atoms, and molecules

Atmospheric Oxidation of Squalene: Molecular Study Using COBRA Modeling and High-Resolution Mass Spectrometry

Energy Technology Data Exchange (ETDEWEB)

Fooshee, David R.; Aiona, Paige K.; Laskin, Alexander; Laskin, Julia; Nizkorodov, Sergey; Baldi, Pierre

2015-10-22

Squalene is a major component of skin and plant surface lipids, and is known to be present at high concentrations in indoor dust. Its high reactivity toward ozone makes it an important ozone sink and a natural protectant against atmospheric oxidizing agents. While the volatile products of squalene ozonolysis are known, the condensed-phase products have not been characterized. We present an analysis of condensed-phase products resulting from an extensive oxidation of squalene by ozone probed by electrospray ionization (ESI) high-resolution mass spectrometry (HR-MS). A complex distribution of nearly 1,300 peaks assignable to molecular formulas is observed in direct infusion positive ion mode ESI mass spectra. The distribution of peaks in the mass spectra suggests that there are extensive cross-coupling reactions between hydroxy-carbonyl products of squalene ozonolysis. To get additional insights into the mechanism, we apply a Computational Brewing Application (COBRA) to simulate the oxidation of squalene in the presence of ozone, and compare predicted results with those observed by the HR-MS experiments. The system predicts over one billion molecular structures between 0-1450 Da, which correspond to about 27,000 distinct elemental formulas. Over 83% of the squalene oxidation products inferred from the mass spectrometry data are matched by the simulation. Simulation indicates a prevalence of peroxy groups, with hydroxyl and ether groups being the second-most important O-containing functional groups formed during squalene oxidation. These highly oxidized products of squalene ozonolysis may accumulate on indoor dust and surfaces, and contribute to their redox capacity.

High-Performance Scalable Information Service for the ATLAS Experiment

International Nuclear Information System (INIS)

Kolos, S; Boutsioukis, G; Hauser, R

2012-01-01

The ATLAS[1] experiment is operated by a highly distributed computing system which is constantly producing a lot of status information which is used to monitor the experiment operational conditions as well as to assess the quality of the physics data being taken. For example the ATLAS High Level Trigger(HLT) algorithms are executed on the online computing farm consisting from about 1500 nodes. Each HLT algorithm is producing few thousands histograms, which have to be integrated over the whole farm and carefully analyzed in order to properly tune the event rejection. In order to handle such non-physics data the Information Service (IS) facility has been developed in the scope of the ATLAS Trigger and Data Acquisition (TDAQ)[2] project. The IS provides a high-performance scalable solution for information exchange in distributed environment. In the course of an ATLAS data taking session the IS handles about a hundred gigabytes of information which is being constantly updated with the update interval varying from a second to a few tens of seconds. IS provides access to any information item on request as well as distributing notification to all the information subscribers. In the latter case IS subscribers receive information within a few milliseconds after it was updated. IS can handle arbitrary types of information, including histograms produced by the HLT applications, and provides C++, Java and Python API. The Information Service is a unique source of information for the majority of the online monitoring analysis and GUI applications used to control and monitor the ATLAS experiment. Information Service provides streaming functionality allowing efficient replication of all or part of the managed information. This functionality is used to duplicate the subset of the ATLAS monitoring data to the CERN public network with a latency of a few milliseconds, allowing efficient real-time monitoring of the data taking from outside the protected ATLAS network. Each information

Status of the ATLAS Pixel Detector and its performance after three years of operation

CERN Document Server

Favareto, A; The ATLAS collaboration

2012-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is very important for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. The detector performance is excellent: ~96 % of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, and a good alignment allows high quality track resolution

Status of the ATLAS Pixel Detector and its performance after three years of operation

CERN Document Server

Favareto, A; The ATLAS collaboration

2012-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is very important for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. The detector performance is excellent: ~96% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, and a good alignment allows high quality track resolution.

eHistology image and annotation data from the Kaufman Atlas of Mouse Development.

Science.gov (United States)

Baldock, Richard A; Armit, Chris

2017-12-20

"The Atlas of Mouse Development" by Kaufman is a classic paper atlas that is the de facto standard for the definition of mouse embryo anatomy in the context of standard histological images. We have re-digitised the original H&E stained tissue sections used for the book at high resolution and transferred the hand-drawn annotations to digital form. We have augmented the annotations with standard ontological assignments (EMAPA anatomy) and made the data freely available via an online viewer (eHistology) and from the University of Edinburgh DataShare archive. The dataset captures and preserves the definitive anatomical knowledge of the original atlas, provides a core image set for deeper community annotation and teaching, and delivers a unique high-quality set of high-resolution histological images through mammalian development for manual and automated analysis. © The Authors 2017. Published by Oxford University Press.

ATLAS: A High-cadence All-sky Survey System

Science.gov (United States)

Tonry, J. L.; Denneau, L.; Heinze, A. N.; Stalder, B.; Smith, K. W.; Smartt, S. J.; Stubbs, C. W.; Weiland, H. J.; Rest, A.

2018-06-01

Technology has advanced to the point that it is possible to image the entire sky every night and process the data in real time. The sky is hardly static: many interesting phenomena occur, including variable stationary objects such as stars or QSOs, transient stationary objects such as supernovae or M dwarf flares, and moving objects such as asteroids and the stars themselves. Funded by NASA, we have designed and built a sky survey system for the purpose of finding dangerous near-Earth asteroids (NEAs). This system, the “Asteroid Terrestrial-impact Last Alert System” (ATLAS), has been optimized to produce the best survey capability per unit cost, and therefore is an efficient and competitive system for finding potentially hazardous asteroids (PHAs) but also for tracking variables and finding transients. While carrying out its NASA mission, ATLAS now discovers more bright (m day cadence. ATLAS discovered the afterglow of a gamma-ray burst independent of the high energy trigger and has released a variable star catalog of 5 × 106 sources. This is the first of a series of articles describing ATLAS, devoted to the design and performance of the ATLAS system. Subsequent articles will describe in more detail the software, the survey strategy, ATLAS-derived NEA population statistics, transient detections, and the first data release of variable stars and transient light curves.

The ATLAS online High Level Trigger framework: Experience reusing offline software components in the ATLAS trigger

International Nuclear Information System (INIS)

Wiedenmann, Werner

2010-01-01

Event selection in the ATLAS High Level Trigger is accomplished to a large extent by reusing software components and event selection algorithms developed and tested in an offline environment. Many of these offline software modules are not specifically designed to run in a heavily multi-threaded online data flow environment. The ATLAS High Level Trigger (HLT) framework based on the GAUDI and ATLAS ATHENA frameworks, forms the interface layer, which allows the execution of the HLT selection and monitoring code within the online run control and data flow software. While such an approach provides a unified environment for trigger event selection across all of ATLAS, it also poses strict requirements on the reused software components in terms of performance, memory usage and stability. Experience of running the HLT selection software in the different environments and especially on large multi-node trigger farms has been gained in several commissioning periods using preloaded Monte Carlo events, in data taking periods with cosmic events and in a short period with proton beams from LHC. The contribution discusses the architectural aspects of the HLT framework, its performance and its software environment within the ATLAS computing, trigger and data flow projects. Emphasis is also put on the architectural implications for the software by the use of multi-core processors in the computing farms and the experiences gained with multi-threading and multi-process technologies.

High resolution color raster computer animation of space filling molecular models

Energy Technology Data Exchange (ETDEWEB)

Max, N.L.

1981-01-01

The ATOMLLL system efficiently produces realistic photographs of ball-and-stick or space-filling molecular models, with color shading, highlights, shadows, and transparency. The hidden surface problem for a scene composed of intersecting spheres and cylinders is solved on a CDC-7600, which outputs onto magnetic tape the outlines of the visible parts of each object. The outlines are then rendered, at up to 4096 x 4096 resolution, by a Dicomed D-48 color film recorder, controlled by a Varian V-75 minicomputer. The Varian computes the shading and highlights for each pixel in a fast microcoded loop. Recent modifications to give shadows and transparency are described.

High resolution color raster computer animation of space filling molecular models

International Nuclear Information System (INIS)

Max, N.L.

1981-01-01

The ATOMLLL system efficiently produces realistic photographs of ball-and-stick or space-filling molecular models, with color shading, highlights, shadows, and transparency. The hidden surface problem for a scene composed of intersecting spheres and cylinders is solved on a CDC-7600, which outputs onto magnetic tape the outlines of the visible parts of each object. The outlines are then rendered, at up to 4096 x 4096 resolution, by a Dicomed D-48 color film recorder, controlled by a Varian V-75 minicomputer. The Varian computes the shading and highlights for each pixel in a fast microcoded loop. Recent modifications to give shadows and transparency are described

Wind Energy Resource Atlas of Armenia

Energy Technology Data Exchange (ETDEWEB)

Elliott, D.; Schwartz, M.; Scott, G.; Haymes, S.; Heimiller, D.; George, R.

2003-07-01

This wind energy resource atlas identifies the wind characteristics and distribution of the wind resource in the country of Armenia. The detailed wind resource maps and other information contained in the atlas facilitate the identification of prospective areas for use of wind energy technologies for utility-scale power generation and off-grid wind energy applications. The maps portray the wind resource with high-resolution (1-km2) grids of wind power density at 50-m above ground. The wind maps were created at the National Renewable Energy Laboratory (NREL) using a computerized wind mapping system that uses Geographic Information System (GIS) software.

Performance of the ATLAS muon spectrometer

International Nuclear Information System (INIS)

Aleksa, M.

1999-09-01

ATLAS is a general-purpose experiment for the future large hadron collider (LHC) at CERN. Its Muon Spectrometer will require ∼5500 m 2 of precision tracking chambers to measure the muon tracks along a spectrometer arm of 5 m to 15 m length, embedded in a magnetic field of ∼0.5 T. The precision tracking devices in the Muon System will be high pressure drift tubes (MDTs). Approximately 370,000 MDTs will be assembled into ∼1200 drift chambers. The LHC physics discovery range indicates the need for a momentum resolution of ∼10 % for muons with a transverse momentum of p T =1 TeV/c. Following a detailed engineering optimisation of the magnetic-field strength versus the chamber resolution, the ATLAS collaboration opted for a drift-chamber system with very high spatial resolution, σ 2 93/7). Measurements performed in a high-background environment - similar to the ATLAS operational environment - gave us a complete understanding of the individual effects which deteriorate the spatial resolution at high rates. Four effects responsible for a resolution deterioration have been identified: two electronics effects which depend on the count rate of a tube (baseline shift and baseline fluctuations), and two space-charge effects that depend on the local count rate (gain drop and field fluctuations). The understanding of these effects had a major impact on the choice of the drift gas and the front-end electronics. The strong dependence of the drift velocity on the drift field is one major disadvantage of the baseline gas. In this work the full set of effects which lead to systematic errors to the track-position measurement in one tube (e.g. variations of the background rate) was investigated and quantified for realistic LHC operating conditions. For the biggest effects analytical corrections are presented. Finally, the muon-system performance was investigated and a calibration method for the absolute mass scale developed. By means of simulation it was shown that the energy

High Resolution Multiphoton Ionization/Dissociation of Molecular Beam of Acetone from 582.60 to 585.80 nm

Science.gov (United States)

Mejia-Ospino, Enrique; Garcia, Gladis; Guerrero, Alfonso; Alvarez, Ignacio; Cisneros, Carmen

2003-05-01

Multiphoton ionization and dissociation of a jet supersonic of acetone at wavelength from 582.60 to 585.80 nm is studied using a Nd:YAG-OPO (optical parametric oscillator) system coupled to time-of-flight mass spectrometer. We present high-resolution (1.5 cm-1) three-photon resonance multiphoton spectra of the acetone 3s CH3CO+), (CH3+) and (COH+), being CH3COCH3+ ---> CH3CO+ + CH3 the more likely channel. The molecular and acetyl ions are observed practically in overall wavelength range.

Validation Tools for ATLAS Muon Spectrometer Commissioning

International Nuclear Information System (INIS)

Benekos, N.Chr.; Dedes, G.; Laporte, J.F.; Nicolaidou, R.; Ouraou, A.

2008-01-01

The ATLAS Muon Spectrometer (MS), currently being installed at CERN, is designed to measure final state muons of 14 TeV proton-proton interactions at the Large Hadron Collider (LHC) with a good momentum resolution of 2-3% at 10-100 GeV/c and 10% at 1 TeV, taking into account the high level background enviroment, the inhomogeneous magnetic field, and the large size of the apparatus (24 m diameter by 44 m length). The MS layout of the ATLAS detector is made of a large toroidal magnet, arrays of high-pressure drift tubes for precise tracking and dedicated fast detectors for the first-level trigger, and is organized in eight Large and eight Small sectors. All the detectors of the barrel toroid have been installed and the commissioning has started with cosmic rays. In order to validate the MS performance using cosmic events, a Muon Commissioning Validation package has been developed and its results are presented in this paper. Integration with the rest of the ATLAS sub-detectors is now being done in the ATLAS cavern

Creation of RTOG compliant patient CT-atlases for automated atlas based contouring of local regional breast and high-risk prostate cancers.

Science.gov (United States)

Velker, Vikram M; Rodrigues, George B; Dinniwell, Robert; Hwee, Jeremiah; Louie, Alexander V

2013-07-25

Increasing use of IMRT to treat breast and prostate cancers at high risk of regional nodal spread relies on accurate contouring of targets and organs at risk, which is subject to significant inter- and intra-observer variability. This study sought to evaluate the performance of an atlas based deformable registration algorithm to create multi-patient CT based atlases for automated contouring. Breast and prostate multi-patient CT atlases (n = 50 and 14 respectively) were constructed to be consistent with RTOG consensus contouring guidelines. A commercially available software algorithm was evaluated by comparison of atlas-predicted contours against manual contours using Dice Similarity coefficients. High levels of agreement were demonstrated for prediction of OAR contours of lungs, heart, femurs, and minor editing required for the CTV breast/chest wall. CTVs generated for axillary nodes, supraclavicular nodes, prostate, and pelvic nodes demonstrated modest agreement. Small and highly variable structures, such as internal mammary nodes, lumpectomy cavity, rectum, penile bulb, and seminal vesicles had poor agreement. A method to construct and validate performance of CT-based multi-patient atlases for automated atlas based auto-contouring has been demonstrated, and can be adopted for clinical use in planning of local regional breast and high-risk prostate radiotherapy.

Creation of RTOG compliant patient CT-atlases for automated atlas based contouring of local regional breast and high-risk prostate cancers

International Nuclear Information System (INIS)

Velker, Vikram M; Rodrigues, George B; Dinniwell, Robert; Hwee, Jeremiah; Louie, Alexander V

2013-01-01

Increasing use of IMRT to treat breast and prostate cancers at high risk of regional nodal spread relies on accurate contouring of targets and organs at risk, which is subject to significant inter- and intra-observer variability. This study sought to evaluate the performance of an atlas based deformable registration algorithm to create multi-patient CT based atlases for automated contouring. Breast and prostate multi-patient CT atlases (n = 50 and 14 respectively) were constructed to be consistent with RTOG consensus contouring guidelines. A commercially available software algorithm was evaluated by comparison of atlas-predicted contours against manual contours using Dice Similarity coefficients. High levels of agreement were demonstrated for prediction of OAR contours of lungs, heart, femurs, and minor editing required for the CTV breast/chest wall. CTVs generated for axillary nodes, supraclavicular nodes, prostate, and pelvic nodes demonstrated modest agreement. Small and highly variable structures, such as internal mammary nodes, lumpectomy cavity, rectum, penile bulb, and seminal vesicles had poor agreement. A method to construct and validate performance of CT-based multi-patient atlases for automated atlas based auto-contouring has been demonstrated, and can be adopted for clinical use in planning of local regional breast and high-risk prostate radiotherapy

Multi-threaded algorithms for GPGPU in the ATLAS High Level Trigger

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00212700; The ATLAS collaboration

2017-01-01

General purpose Graphics Processor Units (GPGPU) are being evaluated for possible future inclusion in an upgraded ATLAS High Level Trigger farm. We have developed a demonstrator including GPGPU implementations of Inner Detector and Muon tracking and Calorimeter clustering within the ATLAS software framework. ATLAS is a general purpose particle physics experiment located on the LHC collider at CERN. The ATLAS Trigger system consists of two levels, with Level-1 implemented in hardware and the High Level Trigger implemented in software running on a farm of commodity CPU. The High Level Trigger reduces the trigger rate from the 100 kHz Level-1 acceptance rate to 1.5 kHz for recording, requiring an average per-event processing time of ∼ 250 ms for this task. The selection in the high level trigger is based on reconstructing tracks in the Inner Detector and Muon Spectrometer and clusters of energy deposited in the Calorimeter. Performing this reconstruction within the available farm resources presents a significa...

High-resolution ultrasonic spectroscopy

Directory of Open Access Journals (Sweden)

V. Buckin

2018-03-01

Full Text Available High-resolution ultrasonic spectroscopy (HR-US is an analytical technique for direct and non-destructive monitoring of molecular and micro-structural transformations in liquids and semi-solid materials. It is based on precision measurements of ultrasonic velocity and attenuation in analysed samples. The application areas of HR-US in research, product development, and quality and process control include analysis of conformational transitions of polymers, ligand binding, molecular self-assembly and aggregation, crystallisation, gelation, characterisation of phase transitions and phase diagrams, and monitoring of chemical and biochemical reactions. The technique does not require optical markers or optical transparency. The HR-US measurements can be performed in small sample volumes (down to droplet size, over broad temperature range, at ambient and elevated pressures, and in various measuring regimes such as automatic temperature ramps, titrations and measurements in flow.

A High-Granularity Timing Detector for the Phase-II upgrade of the ATLAS Detector System

CERN Document Server

Agapopoulou, Christina; The ATLAS collaboration

2017-01-01

The expected increase of the particle flux at the high luminosity phase of the LHC with instantaneous luminosities up to L = 7.5 × 10^{34} cm^{−2}s^{−1} will have a severe impact on pile-up. The pile-up is expected to increase on average to 200 interactions per bunch crossing. The reconstruction performance for especially jets and transverse missing energy will be severely degraded in the end-cap and forward region of the ATLAS detector. A High Granularity Timing Detector (HGTD) is proposed in front of the liquid Argon end-cap calorimeters of ATLAS for pile-up mitigation in the offline reconstruction. An additional use of the detector as a luminometer is proposed. This device covers the pseudo-rapidity range of 2.4 to about 4. Four layers of Silicon sensors are foreseen to provide precision timing information with a time resolution of the order of 30 picoseconds per minimum ionizing particle in order to assign the energy deposits in the calorimeter to different proton-proton collision vertices. Each read...

Determination of total sulfur in agricultural samples by high-resolution continuum source flame molecular absorption spectrometry.

Science.gov (United States)

Virgilio, Alex; Raposo, Jorge L; Cardoso, Arnaldo A; Nóbrega, Joaquim A; Gomes Neto, José A

2011-03-23

The usefulness of molecular absorption was investigated for the determination of total sulfur (S) in agricultural samples by high-resolution continuum source flame molecular absorption spectrometry. The lines for CS at 257.595, 257.958, and 258.056 nm and for SH at 323.658, 324.064, and 327.990 nm were evaluated. Figures of merit, such as linear dynamic range, sensitivity, linear correlation, characteristic concentration, limit of detection, and precision, were established. For selected CS lines, wavelength-integrated absorbance equivalent to 3 pixels, analytical curves in the 100-2500 mg L(-1) (257.595 nm), 250-2000 mg L(-1) (257.958 nm), and 250-5000 mg L(-1) (258.056 nm) ranges with a linear correlation coefficient better than 0.9980 were obtained. Results were in agreement at a 95% confidence level (paired t test) with those obtained by gravimetry. Recoveries of S in fungicide and fertilizer samples were within the 84-109% range, and the relative standard deviation (n=12) was typically <5%.

A Neural Network Approach to Muon Triggering in ATLAS

CERN Document Server

Livneh, Ran; CERN. Geneva

2007-01-01

The extremely high rate of events that will be produced in the future Large Hadron Collider requires the triggering mechanism to make precise decisions in a few nano-seconds. This poses a complicated inverse problem, arising from the inhomogeneous nature of the magnetic fields in ATLAS. This thesis presents a study of an application of Artificial Neural Networks to the muon triggering problem in the ATLAS end-cap. A comparison with realistic results from the ATLAS first level trigger simulation was in favour of the neural network, but this is mainly due to superior resolution available off-line. Other options for applying a neural network to this problem are discussed.

Precision tracking at high background rates with the ATLAS muon spectrometer

CERN Document Server

Hertenberger, Ralf; The ATLAS collaboration

2012-01-01

Since start of data taking the ATLAS muon spectrometer performs according to specification. End of this decade after the luminosity upgrade of LHC by a factor of ten the proportionally increasing background rates require the replacement of the detectors in the most forward part of the muon spectrometer to ensure high quality muon triggering and tracking at background hit rates of up to 15,kHz/cm$^2$. Square meter sized micromegas detectors together with improved thin gap trigger detectors are suggested as replacement. Micromegas detectors are intrinsically high rate capable. A single hit spatial resolution below 40,$mu$m has been shown for 250,$mu$m anode strip pitch and perpendicular incidence of high energy muons or pions. The ongoing development of large micromegas structures and their investigation under non-perpendicular incidence or in high background environments requires precise and reliable monitoring of muon tracks. A muon telescope consisting of six small micromegas works reliably and is presently ...

High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology

Science.gov (United States)

Mazars, Edith; Lesjean, Sarah; Banuls, Anne-Laure; Gilbert, Michèle; Vincent, Véronique; Gicquel, Brigitte; Tibayrenc, Michel; Locht, Camille; Supply, Philip

2001-01-01

The worldwide threat of tuberculosis to human health emphasizes the need to develop novel approaches to a global epidemiological surveillance. The current standard for Mycobacterium tuberculosis typing based on IS6110 restriction fragment length polymorphism (RFLP) suffers from the difficulty of comparing data between independent laboratories. Here, we propose a high-resolution typing method based on variable number tandem repeats (VNTRs) of genetic elements named mycobacterial interspersed repetitive units (MIRUs) in 12 human minisatellite-like regions of the M. tuberculosis genome. MIRU-VNTR profiles of 72 different M. tuberculosis isolates were established by PCR analysis of all 12 loci. From 2 to 8 MIRU-VNTR alleles were identified in the 12 regions in these strains, which corresponds to a potential of over 16 million different combinations, yielding a resolution power close to that of IS6110-RFLP. All epidemiologically related isolates tested were perfectly clustered by MIRU-VNTR typing, indicating that the stability of these MIRU-VNTRs is adequate to track outbreak episodes. The correlation between genetic relationships inferred from MIRU-VNTR and IS6110-RFLP typing was highly significant. Compared with IS6110-RFLP, high-resolution MIRU-VNTR typing has the considerable advantages of being fast, appropriate for all M. tuberculosis isolates, including strains that have a few IS6110 copies, and permitting easy and rapid comparison of results from independent laboratories. This typing method opens the way to the construction of digital global databases for molecular epidemiology studies of M. tuberculosis. PMID:11172048

WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations.

Science.gov (United States)

Černý, Jiří; Schneider, Bohdan; Biedermannová, Lada

2017-07-14

Water molecules represent an integral part of proteins and a key determinant of protein structure, dynamics and function. WatAA is a newly developed, web-based atlas of amino-acid hydration in proteins. The atlas provides information about the ordered first hydration shell of the most populated amino-acid conformers in proteins. The data presented in the atlas are drawn from two sources: experimental data and ab initio quantum-mechanics calculations. The experimental part is based on a data-mining study of a large set of high-resolution protein crystal structures. The crystal-derived data include 3D maps of water distribution around amino-acids and probability of occurrence of each of the identified hydration sites. The quantum mechanics calculations validate and extend this primary description by optimizing the water position for each hydration site, by providing hydrogen atom positions and by quantifying the interaction energy that stabilizes the water molecule at the particular hydration site position. The calculations show that the majority of experimentally derived hydration sites are positioned near local energy minima for water, and the calculated interaction energies help to assess the preference of water for the individual hydration sites. We propose that the atlas can be used to validate water placement in electron density maps in crystallographic refinement, to locate water molecules mediating protein-ligand interactions in drug design, and to prepare and evaluate molecular dynamics simulations. WatAA: Atlas of Protein Hydration is freely available without login at .

Performance of the ATLAS Transition Radiation Tracker with Comic Rays and First High Energy Collisions at LHC

CERN Document Server

Degenhardt, J D; The ATLAS collaboration

2010-01-01

The ATLAS Transition Radiation Tracker (TRT) is the outermost of the three sub-systems of the ATLAS Inner Detector at the Large Hadron Collider (LHC) at CERN. It consists of close to 300000 thin-wall drift tubes (straws) providing on average 30 two-dimensional space points with 130 μm resolution for charged particle tracks with |η| < 2 and pT > 0.5 GeV. Along with continuous tracking, it provides particle identification capability through the detection of transition radiation X-ray photons generated by high velocity particles in the many polymer fibers or films that fill the spaces between the straws. The custom-made radiation-hard front-end electronics implements two thresholds to discriminate the signals: a low threshold (< 300 eV) for registering the passage of minimum ionizing particles, and a high threshold (> 6 keV) to flag the absorption of transition radiation X-rays. The TRT was successfully commissioned with data collected from several million cosmic ray muons. A specia...

Search for high mass resonances in the dimuon channel using the muon spectrometer of the atlas experiment at CERN

International Nuclear Information System (INIS)

Helsens, C.

2009-06-01

This thesis covers the search of new neutral gauge bosons decaying into a pair of muons in the ATLAS detector. The Large Hadron Collider (LHC) at CERN will produce parton collisions with very high center of mass energy and may produce Z' predicted by many theories beyond the standard model. Such a resonance should be detected by the ATLAS experiment. For the direct search of Z' decaying into two muons, a small number of events is enough for its discovery, which is possible with the first data. We shall study in particular the effects of the muon spectrometer alignment on high p T tracks and on the Z' discovery potential in the ATLAS experiment. The discovery potentials computed with this method have been officially approved by the ATLAS collaboration and published. At the start of the LHC operation, the muon spectrometer alignment will not have reached the nominal performances. This analysis aims at optimizing the discovery potential of ATLAS for a Z' boson in this degraded initial conditions. The impact on track reconstruction of a degraded alignment is estimated with simulated high p T tracks. Results are given in terms of reconstruction efficiency, momentum and invariant mass resolutions, charge identification and sensitivity to discovery or exclusion. With the first data, an analysis using only the muon spectrometer in stand alone mode will be very useful. Finally, a study on how to determine the initial geometry of the spectrometer (needed for its absolute alignment) is performed. This study uses straight tracks without a magnetic field and also calculates the beam time necessary for reaching a given accuracy of the alignment system. (author)

Spinal canal stenosis at the level of Atlas

Directory of Open Access Journals (Sweden)

Suchanda Bhattacharjee

2011-01-01

Full Text Available We report here a rare case of high cervical stenosis at the level of atlas who presented with progressively deteriorating quadriparesis and respiratory distress. A 10-year-old boy presented with above symptoms of one-year duration with a preceding history of trivial trauma prior to onset of such symptoms. Cervical spine MRI revealed a significant stenosis at the level of atlas from the posterior side with a syrinx extending above and below. High-resolution computed tomography of the above level yielded an ill-defined osseous bar compressing the canal at the level of C 1 posterior arch, which appeared bifid in the midline. The patient was immediately taken up for surgery in view of his respiratory complaints. The child showed an excellent recovery after excision of the posterior arch of atlas and removal of the compressing osseous structure.

The Equine PeptideAtlas

DEFF Research Database (Denmark)

Bundgaard, Louise; Jacobsen, Stine; Sørensen, Mette Aamand

2014-01-01

Progress in MS-based methods for veterinary research and diagnostics is lagging behind compared to the human research, and proteome data of domestic animals is still not well represented in open source data repositories. This is particularly true for the equine species. Here we present a first...... Equine PeptideAtlas encompassing high-resolution tandem MS analyses of 51 samples representing a selection of equine tissues and body fluids from healthy and diseased animals. The raw data were processed through the Trans-Proteomic Pipeline to yield high quality identification of proteins and peptides....... The current release comprises 24 131 distinct peptides representing 2636 canonical proteins observed at false discovery rates of 0.2% at the peptide level and 1.4% at the protein level. Data from the Equine PeptideAtlas are available for experimental planning, validation of new datasets, and as a proteomic...

Study of the performance of ATLAS muon drift-tube chambers in magntic fields and at high irradiation rates

Energy Technology Data Exchange (ETDEWEB)

Valderanis, Chrysostomos

2012-07-26

The performance of ATLAS muon drift-tube (MDT) chambers has been studied in detail using high-energy muon beams. The measurements of the drift tube properties in magnetic fields showed that inelastic collisions of the drifting electrons with the CO{sub 2} molecules in the Ar:CO{sub 2} (93:7) gas mixture of the MDT chambers have to be taken into account in the simulation of the drift properties. Such inelastic collisions are now correctly treated by the Garfield simulation programme from version 9 providing an accurate description of the behaviour of the ATLAS muon drift tubes, in particular in the magnetic field. Measurements at the Gamma Irradiation Facility at CERN were performed to study the performance of the MDT chambers in the presence of high {gamma} ray background fluences. The chambers have a spatial resolution better than 40 {mu}m at the nominal background rates expected at the Large Hadron Collider design luminosity of 10{sup 34} cm{sup -2}s{sup -1} and a resolution better than 50 {mu}m for up to five times higher background rates. Efficient muon detection up to background counting rates of 500 kHz per tube corresponding to 35% occupancy was demonstrated.

The Web Lecture Archive Project: Archiving ATLAS Presentations and Tutorials

CERN Multimedia

Herr, J

2004-01-01

The geographical diversity of the ATLAS Collaboration presents constant challenges in the communication between and training of its members. One important example is the need for training of new collaboration members and/or current members on new developments. The Web Lecture Archive Project (WLAP), a joint project between the University of Michigan and CERN Technical Training, has addressed this challenge by recording ATLAS tutorials in the form of streamed "Web Lectures," consisting of synchronized audio, video and high-resolution slides, available on demand to anyone in the world with a Web browser. ATLAS software tutorials recorded by WLAP include ATHENA, ATLANTIS, Monte Carlo event generators, Object Oriented Analysis and Design, GEANT4, and Physics EDM and tools. All ATLAS talks, including both tutorials and meetings are available at http://www.wlap.org/browser.php?ID=atlas. Members of the University of Michigan Physics Department and Media Union, under the framework of the ATLAS Collaboratory Project ...

ATLAS beam properties: some implications for target making

International Nuclear Information System (INIS)

Pardo, R.

1984-01-01

The expansion of the tandem-linac booster into the Argonne Tandem-Linac Accelerator System, ATLAS, is approximately 40% complete. When completed, the facility will provide beams of heavy ions from lithium to tin with energies eventually, to 25 MeV/amu. The existing facility continues to provide beams for the experimental program in nuclear and atomic physics during the construction phase. The booster system is capable of accelerating ions as heavy as selenium to energies of 10 MeV/amu for the lighter ions. The good beam quality provided by the linac means that multiple scattering, energy straggling, and target inhomogeneities are major factors in the resolution attainable in experiments. The beam properties that can be expected from ATLAS will be discussed and the present state of high resolution experiments will be reported

Studies of ATM for ATLAS high-level triggers

CERN Document Server

Bystrický, J; Huet, M; Le Dû, P; Mandjavidze, I D

2001-01-01

This paper presents some of the conclusions of our studies on asynchronous transfer mode (ATM) and fast Ethernet in the ATLAS level-2 trigger pilot project. We describe the general concept and principles of our data-collection and event-building scheme that could be transposed to various experiments in high-energy and nuclear physics. To validate the approach in view of ATLAS high-level triggers, we assembled a testbed composed of up to 48 computers linked by a 7.5-Gbit/s ATM switch. This modular switch is used as a single entity or is split into several smaller interconnected switches. This allows study of how to construct a large network from smaller units. Alternatively, the ATM network can be replaced by fast Ethernet. We detail the operation of the system and present series of performance measurements made with event-building traffic pattern. We extrapolate these results to show how today's commercial networking components could be used to build a 1000-port network adequate for ATLAS needs. Lastly, we li...

Multi-threading in the ATLAS High-Level Trigger

CERN Document Server

Barton, Adam Edward; The ATLAS collaboration

2018-01-01

Over the next decade of LHC data-taking the instantaneous luminosity will reach up 7.5 times the design value with over 200 interactions per bunch-crossing and will pose unprecedented challenges for the ATLAS trigger system. With the evolution of the CPU market to many-core systems, both the ATLAS offline reconstruction and High-Level Trigger (HLT) software will have to transition from a multi-process to a multithreaded processing paradigm in order not to exhaust the available physical memory of a typical compute node. The new multithreaded ATLAS software framework, AthenaMT, has been designed from the ground up to support both the offline and online use-cases with the aim to further harmonize the offline and trigger algorithms. The latter is crucial both in terms of maintenance effort and to guarantee the high trigger efficiency and rejection factors needed for the next two decades of data-taking. We report on an HLT prototype in which the need for HLT­specific components has been reduced to a minimum while...

Operational experience with the ATLAS Pixel Detector

CERN Document Server

Ince, T; The ATLAS collaboration

2012-01-01

The ATLAS Pixel Detector is the innermost element of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this paper, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 96.2% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational experience of the ATLAS Pixel detector

CERN Document Server

Hirschbuehl, D; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational experience of the ATLAS Pixel Detector

CERN Document Server

Marcisovsky, M; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Production of the Finnish Wind Atlas

DEFF Research Database (Denmark)

Tammelin, Bengt; Vihma, Timo; Atlaskin, Evgeny

2013-01-01

) the parameterization method for gust factor was extended to be applicable at higher altitudes; and (vii) the dissemination of the Wind Atlas was based on new technical solutions. The AROME results were calculated for the heights of 50, 75, 100, 125, 150, 200, 300 and 400 m, and the WAsP results for the heights of 50......, 75, 100, 125 and 150 m. In addition to the wind speed, the results included the values of the Weibull distribution parameters, the gust factor, wind power content and the potential power production, which was calculated for three turbine sizes. The Wind Atlas data are available for each grid point......The Finnish Wind Atlas was prepared applying the mesoscale model AROME with 2.5 km horizontal resolution and the diagnostic downscaling method Wind Atlas Analysis and Application Programme (WAsP) with 250 m resolution. The latter was applied for areas most favourable for wind power production: a 30...

Development of a compact scintillator-based high-resolution Compton camera for molecular imaging

Energy Technology Data Exchange (ETDEWEB)

Kishimoto, A., E-mail: daphne3h-aya@ruri.waseda.jp [Research Institute for Science and Engineering, Waseda University, 3-4-1 Ohkubo, Shinjuku, Tokyo (Japan); Kataoka, J.; Koide, A.; Sueoka, K.; Iwamoto, Y.; Taya, T. [Research Institute for Science and Engineering, Waseda University, 3-4-1 Ohkubo, Shinjuku, Tokyo (Japan); Ohsuka, S. [Central Research Laboratory, Hamamatsu Photonics K.K., 5000 Hirakuchi, Hamakita-ku, Hamamatsu, Shizuoka (Japan)

2017-02-11

The Compton camera, which shows gamma-ray distribution utilizing the kinematics of Compton scattering, is a promising detector capable of imaging across a wide range of energy. In this study, we aim to construct a small-animal molecular imaging system in a wide energy range by using the Compton camera. We developed a compact medical Compton camera based on a Ce-doped Gd{sub 3}Al{sub 2}Ga{sub 3}O{sub 12} (Ce:GAGG) scintillator and multi-pixel photon counter (MPPC). A basic performance confirmed that for 662 keV, the typical energy resolution was 7.4 % (FWHM) and the angular resolution was 4.5° (FWHM). We then used the medical Compton camera to conduct imaging experiments based on a 3-D imaging reconstruction algorithm using the multi-angle data acquisition method. The result confirmed that for a {sup 137}Cs point source at a distance of 4 cm, the image had a spatial resolution of 3.1 mm (FWHM). Furthermore, we succeeded in producing 3-D multi-color image of different simultaneous energy sources ({sup 22}Na [511 keV], {sup 137}Cs [662 keV], and {sup 54}Mn [834 keV]).

Quantitative analysis of localized stresses in irradiated stainless steels using high resolution electron backscatter diffraction and molecular dynamics modeling

International Nuclear Information System (INIS)

Johnson, D.C.; Kuhr, B.; Farkas, D.; Was, G.S.

2016-01-01

Quantitative measurements of stress near dislocation channel–grain boundary (DC–GB) interaction sites were made using high resolution electron backscatter diffraction (HREBSD) and have been compared with molecular dynamics (MD) simulations. Tensile stress normal to the grain boundary was significantly elevated at discontinuous DC–GB intersections with peak magnitudes roughly an order of magnitude greater than at sites where slip transfer occurred. These results constitute the first measurement of stress amplification at DC–GB intersections and provide support to the theory that high normal stress at the grain boundary may be a key driver for the initiation of irradiation assisted stress corrosion cracks.

Physics Division annual review, April 1, 1988--March 31, 1989

International Nuclear Information System (INIS)

Thayer, K.J.

1989-08-01

This document discusses the following main topics: Research at Atlas; Operation and Development of Atlas; Medium-Energy Nuclear Physics and Weak Interactions; Theoretical Nuclear Physics; Interactions of Fast Atomic and Molecular Ions with Solid and Gaseous Targets; Atomic Physics at Synchrotron Light Sources; Atomic Physics at Atlas and the ECR Source; Theoretical Atomic Physics; High-Resolution Laser-rf Spectroscopy of Atomic and Molecular Beams; and Fast Ion-Beam/Laser Studies of Atomic and Molecular Structure

Physics Division annual review, April 1, 1988--March 31, 1989

Energy Technology Data Exchange (ETDEWEB)

Thayer, K.J. (ed.)

1989-08-01

This document discusses the following main topics: Research at Atlas; Operation and Development of Atlas; Medium-Energy Nuclear Physics and Weak Interactions; Theoretical Nuclear Physics; Interactions of Fast Atomic and Molecular Ions with Solid and Gaseous Targets; Atomic Physics at Synchrotron Light Sources; Atomic Physics at Atlas and the ECR Source; Theoretical Atomic Physics; High-Resolution Laser-rf Spectroscopy of Atomic and Molecular Beams; and Fast Ion-Beam/Laser Studies of Atomic and Molecular Structure.

High voltage multiplexing for the ATLAS Tracker Upgrade

International Nuclear Information System (INIS)

Villani, E G; Phillips, P; Matheson, J; Lynn, D; Hommels, L B A; Gregor, I; Bessner, M; Tackmann, K; Newcomer, F M; Spencer, E; Greenall, A

2014-01-01

The increased luminosity of the HL-LHC will require more channels in the upgraded ATLAS Tracker, as a result of the finer detector segmentation, stemming from the otherwise too high occupancy. Among the many technological challenges facing the ATLAS Tracker Upgrade there is more an efficient power distribution and HV biasing of the sensors. The solution adopted in the current ATLAS detector uses one HV conductor for each sensor, which makes it easy to disable malfunctioning sensors without affecting the others, but space constraints and material budget considerations renders this approach impractical for the Upgraded detector. A number of approaches, including the use of the same HV line to bias several sensors and suitable HV switches, along with their control circuitry, are currently being investigated for this purpose. The proposed solutions along with latest test results and measurements will be described

The ATLAS Fast Tracker

CERN Document Server

Volpi, Guido; The ATLAS collaboration

2015-01-01

The use of tracking information at the trigger level in the LHC Run II period is crucial for the trigger an data acquisition (TDAQ) system. The tracking precision is in fact important to identify specific decay products of the Higgs boson or new phenomena, a well as to distinguish the contributions coming from many contemporary collisions that occur at every bunch crossing. However, the track reconstruction is among the most demanding tasks performed by the TDAQ computing farm; in fact, full reconstruction at full Level-1 trigger accept rate (100 KHz) is not possible. In order to overcome this limitation, the ATLAS experiment is planning the installation of a specific processor: the Fast Tracker (FTK), which is aimed at achieving this goal. The FTK is a pipeline of high performance electronic, based on custom and commercial devices, which is expected to reconstruct, with high resolution, the trajectories of charged tracks with a transverse momentum above 1 GeV, using the ATLAS inner tracker information. Patte...

Topics in the measurement of electrons with the ATLAS detector at the LHC

CERN Document Server

Thioye, Moustapha

2008-01-01

Upon completion in 2008, the Large Hadron Collider (LHC) will accelerate and collide protons with a 14~TeV center-of-mass energy at a designed luminosity of $10^{34}\\rm {cm^{-2}s^{-1}}$. The LHC will also be able to accelerate and collide heavy ions (Pb-Pb) at a nucleon-nucleon center of mass of 5.5~TeV. It will be the most powerful instrument ever built to investigate particles properties. The ATLAS (A Toroidal LHC ApparatuS) experiment is one of five experiments at the LHC. ATLAS is a general-purpose detector designed for the discovery of new particles predicted by the Standard Model (i.e Higgs boson), and of signatures of physics beyond the Standard Model (i.e supersymmetry). These discoveries require a highly efficient detection and high-resolution measurement of leptons or photons in the final state. In ATLAS, the liquid Argon (LAr) calorimeters identify and measure electrons and photons with high resolution. This dissertation reports on a study of various topics relevant to the measurement of electrons ...

Brain transcriptome atlases : A computational perspective

NARCIS (Netherlands)

Mahfouz, A.M.E.T.A.; Huisman, S.M.H.; Lelieveldt, B.P.F.; Reinders, M.J.T.

2017-01-01

The immense complexity of the mammalian brain is largely reflected in the underlying molecular signatures of its billions of cells. Brain transcriptome atlases provide valuable insights into gene expression patterns across different brain areas throughout the course of development. Such atlases

Alignment of the ATLAS central muon spectrometer

CERN Document Server

Chevallier, F

2008-01-01

The muon spectrometer of the ATLAS experiment is one of the largest detectors ever built. At the LHC, new physics signs could appear through high momenta muons (1 TeV). Identification and precise momentum measurement of such muons are two of the main challenges of the ATLAS muon spectrometer. In order to get a good resolution for high energy muons (i.e. 10% at 1 TeV), the accuracy on the alignment of precision chambers must be of the order of 50 microns. Several procedures have been developed to reach such a precision. This document describes complementary techniques used to align the muon sub-detectors, and their results : the optical system, the muon cosmic rays and the straight tracks coming from collisions.

The Copernicus ultraviolet spectral atlas of Iota Herculis

Science.gov (United States)

Upson, W. L., II; Rogerson, J. B., Jr.

1980-01-01

An ultraviolet spectral atlas is presented for the B3 IV star Iota Herculis, which has been scanned from 999 to 1467 A by the Princeton spectrometer aboard the Copernicus satellite. From 999 to 1422 A the observations have a nominal resolution of 0.05 A. At the longer wavelengths the resolution is 0.1 A. The atlas is presented in graphs. Lines identified in the spectrum are also listed.

Advanced Alignment of the ATLAS Tracking System

CERN Document Server

Pedraza Lopez, S; The ATLAS collaboration

2012-01-01

In order to reconstruct trajectories of charged particles, ATLAS is equipped with a tracking system built using different technologies embedded in a 2T solenoidal magnetic field. ATLAS physics goals require high resolution, unbiased measurement of all charged particle kinematic parameters in order to assure accurate invariant mass reconstruction and interaction and decay vertex finding. These critically depend on the systematic effects related to the alignment of the tracking system. In order to eliminate malicious systematic deformations, various advanced tools and techniques have been put in place. These include information from known mass resonances, energy of electrons and positrons measured by the electromagnetic calorimeters, etc. Despite being stable under normal running conditions, ATLAS tracking system responses to sudden environ-mental changes (temperature, magnetic field) by small collective deformations. These have to be identified and corrected in order to assure uniform, highest quality tracking...

Jet energy resolution in proton-proton collisions at [Formula: see text] recorded in 2010 with the ATLAS detector.

Science.gov (United States)

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Quayle, W B; Quinonez, F; Raas, M; Radescu, V; Radloff, P; Rador, T; Ragusa, F; Rahal, G; Rahimi, A M; Rahm, D; Rajagopalan, S; Rammensee, M; Rammes, M; Randle-Conde, A S; Randrianarivony, K; Rauscher, F; Rave, T C; Raymond, M; Read, A L; Rebuzzi, D M; Redelbach, A; Redlinger, G; Reece, R; Reeves, K; Reinherz-Aronis, E; Reinsch, A; Reisin, H; Reisinger, I; Rembser, C; Ren, Z L; Renaud, A; Rescigno, M; Resconi, S; Resende, B; Reznicek, P; Rezvani, R; Richter, R; Richter-Was, E; Ridel, M; Rijpstra, M; Rijssenbeek, M; Rimoldi, A; Rinaldi, L; Rios, R R; Riu, I; Rivoltella, G; Rizatdinova, F; Rizvi, E; Robertson, S H; Robichaud-Veronneau, A; Robinson, D; Robinson, J E M; Robson, A; Rocha de Lima, J G; Roda, C; Roda Dos Santos, D; Roe, A; Roe, S; Røhne, O; Rolli, S; Romaniouk, A; Romano, M; Romeo, G; Romero Adam, E; Roos, L; Ros, E; Rosati, S; Rosbach, K; Rose, A; Rose, M; Rosenbaum, G A; Rosenberg, E I; Rosendahl, P L; Rosenthal, O; Rosselet, L; Rossetti, V; Rossi, E; Rossi, L P; Rotaru, M; 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Serfon, C; Serin, L; Serkin, L; Seuster, R; Severini, H; Sfyrla, A; Shabalina, E; Shamim, M; Shan, L Y; Shank, J T; Shao, Q T; Shapiro, M; Shatalov, P B; Shaw, K; Sherman, D; Sherwood, P; Shibata, A; Shimizu, S; Shimojima, M; Shin, T; Shiyakova, M; Shmeleva, A; Shochet, M J; Short, D; Shrestha, S; Shulga, E; Shupe, M A; Sicho, P; Sidoti, A; Siegert, F; Sijacki, Dj; Silbert, O; Silva, J; Silver, Y; Silverstein, D; Silverstein, S B; Simak, V; Simard, O; Simic, Lj; Simion, S; Simioni, E; Simmons, B; Simoniello, R; Simonyan, M; Sinervo, P; Sinev, N B; Sipica, V; Siragusa, G; Sircar, A; Sisakyan, A N; Sivoklokov, S Yu; Sjölin, J; Sjursen, T B; Skinnari, L A; Skottowe, H P; Skovpen, K; Skubic, P; Slater, M; Slavicek, T; Sliwa, K; Smakhtin, V; Smart, B H; Smirnov, S Yu; Smirnov, Y; Smirnova, L N; Smirnova, O; Smith, B C; Smith, D; Smith, K M; Smizanska, M; Smolek, K; Snesarev, A A; Snow, S W; Snow, J; Snyder, S; Sobie, R; Sodomka, J; Soffer, A; Solans, C A; Solar, M; Solc, J; Soldatov, E Yu; 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The measurement of the jet energy resolution is presented using data recorded with the ATLAS detector in proton-proton collisions at [Formula: see text]. The sample corresponds to an integrated luminosity of 35 pb -1 . Jets are reconstructed from energy deposits measured by the calorimeters and calibrated using different jet calibration schemes. The jet energy resolution is measured with two different in situ methods which are found to be in agreement within uncertainties. The total uncertainties on these measurements range from 20 % to 10 % for jets within | y |<2.8 and with transverse momenta increasing from 30 GeV to 500 GeV. Overall, the Monte Carlo simulation of the jet energy resolution agrees with the data within 10 %.

Vertex Reconstruction and Performance in ATLAS

CERN Document Server

Whitmore, Ben William; The ATLAS collaboration

2017-01-01

Efficient and precise reconstruction of the primary vertices in LHC collisions is essential in both the reconstruction of the full kinematic properties of a hard-scatter event and of soft interactions as a measure of the amount of pile-up. The reconstruction of the primary vertices in the busy, high pile up environment of the LHC is a challenging task. The challenges and novel methods developed by the ATLAS experiment to reconstruct vertices in such environments will be presented. The performance of the current vertexing algorithms using Run-2 data will be presented and compared to results from simulation. Additionally, data-driven methods to evaluate vertex resolution, and details of upgrades to the ATLAS inner detector will be presented.

Electron signals in the Forward Calorimeter prototype for ATLAS

International Nuclear Information System (INIS)

Armitage, J C; Artamonov, A; Babukhadia, L; Dixit, M; Embry, T M; Epshteyn, V; Estabrooks, P; Gravelle, P; Hamm, J; Khovansky, V; Koolbeck, D A; Krieger, P; Loch, P; Losty, M; Mayer, J; Mazini, R; Oakham, F Gerald; O'Neill, M; Orr, R S; Rutherfoord, J P; Ryabinin, M; Savine, A; Seely, C Jason; Shatalov, P; Shaver, L S; Shupe, M A; Stairs, G; Tompkins, D; Trischuk, W; Vincent, K; Zaitsev, V

2007-01-01

A pre-production prototype of the Forward Calorimeter (FCal) for the ATLAS detector presently under construction at the Large Hadron Collider (LHC) at CERN, Geneva, Switzerland, was exposed to electrons in the momentum range from 20 to 200 GeV/c in a test beam experiment at CERN in 1998. The measured performance, including a signal linearity within about ±1% and a high energy limit in the relative energy resolution of about 4%, meets the expectations for this kind of calorimeter, and exceeds the physics requirements for successful application in ATLAS

Robust methods to create ex vivo minimum deformation atlases for brain mapping.

Science.gov (United States)

Janke, Andrew L; Ullmann, Jeremy F P

2015-02-01

Highly detailed ex vivo 3D atlases of average structure are of critical importance to neuroscience and its current push to understanding the global microstructure of the brain. Multiple single slice histology sections can no longer provide sufficient detail of inter-slice microstructure and lack out of plane resolution. Two ex vivo methods have emerged that can create such detailed models. High-field micro MRI with the addition of contrast media has allowed intact whole brain microstructure imaging with an isotropic resolution of 15 μm in mouse. Blockface imaging has similarly evolved to a point where it is now possible to image an entire brain in a rigorous fashion with an out of plane resolution of 10 μm. Despite the destruction of the tissue as part of this process it allows a reconstructed model that is free from cutting artifacts. Both of these methods have been utilised to create minimum deformation atlases that are representative of the respective populations. The MDA atlases allow us unprecedented insight into the commonality and differences in microstructure in cortical structures in specific taxa. In this paper we provide an overview of how to create such MDA models from ex vivo data. Copyright © 2015 Elsevier Inc. All rights reserved.

Fast Tracker Performance using the new ”Variable Resolution Associative Memory” for ATLAS

CERN Document Server

Iizawa, T; The ATLAS collaboration

2012-01-01

The Fast Tracker (FTK) for the ATLAS trigger is the only state-of-the-art online processor that tackles and solves the full track reconstruction problem at a hadron collider. We describe an important advancement for the Associative Memory device (AM). The AM is a VLSI processor for pattern recognition based on Content Addressable Memory (CAM) architecture. Pattern matching is carried out by finding track candidates in coarse resolution ”roads”. A large AM bank stores all trajectories of interest, called ”patterns”, for a given detector resolution. The AM extracts roads compatible with a given event during detector read-out. Two important variables characterize the quality of the AM bank: its ”coverage” and the level of fake roads. The coverage, which describes the geometric efficiency of a bank, is defined as the fraction of tracks that match at least one pattern in the bank. Given a certain road size, the coverage of the bank can be increased just adding patterns to the bank, while the number of ...

Morphology and kinematics of filaments in Serpens and Perseus molecular clouds: a high resolution study

Science.gov (United States)

Dhabal, Arnab; Mundy, Lee; Rizzo, Maxime; Storm, Shaye; Teuben, Peter; CLASSy Collaboration

2018-01-01

Filamentary structures are prevalent in molecular clouds over a wide range of scales, and are often associated with active star formation. The study of filament morphology and kinematics provide insights into the physical processes leading to core formation in clustered environments. As part of the CARMA Large Area Star Formation Survey (CLASSy) follow-up, we observed five Herschel filaments in the Serpens Main, Serpens South and NGC1333 molecular clouds using the J=1-0 transitions of dense gas tracers H13CO+, HNC and H13CN. Of these, H13CO+ and H13CN are optically thin and serve as a test of the kinematics previously seen by the CLASSy in N2H+. The observations have an angular resolution of 7'' and a spectral resolution of 0.16 km/s. Although the large scale structure compares well with the CARMA N2H+ (J=1-0) maps and Herschel dust continuum maps, we resolve finer structure within the filaments identified by Herschel. Most regions are found to have multiple structures and filaments partially overlapping in the line-of-sight. In two regions overlapping structures have velocity differences as high as 1.4 km/s. We identify 8 individual filaments with typical widths of 0.03-0.06 pc in these tracers, which is significantly less than widths observed in the Herschel dust column density maps. At least 50% of the filaments have distinct velocity gradients perpendicular to their major axis with average values in the range 4-10 km s-1 pc-1. These findings are in support of the theoretical models of filament formation by 2-D inflow in the shock layer created by colliding turbulent cells. We also find evidence of velocity gradients along the length of two filaments; the gradients suggest that these filaments are inflowing towards the cloud core.

Atlas of regional anatomy of the brain using MRI. With functional correlations

International Nuclear Information System (INIS)

Tamraz, J.C.

2006-01-01

The volume provides a unique review of the essential topographical anatomy of the brain from an MRI perspective, correlating high-quality anatomical plates with the corresponding high-resolution MRI images. The book includes a historical review of brain mapping and an analysis of the essential reference planes used for the study of the human brain. Subsequent chapters provide a detailed review of the sulcal and the gyral anatomy of the human cortex, guiding the reader through an interpretation of the individual brain atlas provided by high-resolution MRI. The relationship between brain structure and function is approached in a topographical fashion with analysis of the necessary imaging methodology and displayed anatomy. The central, perisylvian, mesial temporal and occipital areas receive special attention. Imaging of the core brain structures is included. An extensive coronal atlas concludes the book. (orig.)

Performance of the ATLAS hadronic end-cap calorimeter in beam tests

International Nuclear Information System (INIS)

Dowler, B.; Pinfold, J.; Soukup, J.; Vincter, M.; Cheplakov, A.; Datskov, V.; Fedorov, A.; Javadov, N.; Kalinnikov, V.; Kakurin, S.; Kazarinov, M.; Kukhtin, V.; Ladygin, E.; Lazarev, A.; Neganov, A.; Pisarev, I.; Serochkin, E.; Shilov, S.; Shalyugin, A.; Usov, Yu.; Ban, J.; Bruncko, D.; Chytracek, R.; Jusko, A.; Kladiva, E.; Strizenec, P.; Gaertner, V.; Hiebel, S.; Hohlfeld, M.; Jakobs, K.; Koepke, L.; Marschalkowski, E.; Meder, D.; Othegraven, R.; Schaefer, U.; Thomas, J.; Walkowiak, W.; Zeitnitz, C.; Leroy, C.; Mazini, R.; Mehdiyev, R.; Akimov, A.; Blagov, M.; Komar, A.; Snesarev, A.; Speransky, M.; Sulin, V.; Yakimenko, M.; Aderholz, M.; Brettel, H.; Cwienk, W.; Dulny, B.; Fent, J.; Fischer, A.; Haberer, W.; Huber, J.; Huber, R.; Karev, A.; Kiryunin, A.; Kobler, T.; Kurchaninov, L.; Laskus, H.; Lindenmayer, M.; Mooshofer, P.; Oberlack, H.; Salihagic, D.; Schacht, P.; Stenzel, H.; Striegel, D.; Tribanek, W.; Chekulaev, S.; Denisov, S.; Levitsky, M.; Minaenko, A.; Mitrofanov, G.; Moiseev, A.; Pleskatch, A.; Sytnik, V.; Benoit, P.; Hoyle, K.W.; Honma, A.; Maharaj, R.; Oram, C.J.; Pattyn, E.W.; Rosvick, M.; Sbarra, C.; Wellisch, H-P.; Wielers, M.; Birney, P.S.; Dobbs, M.; Fincke-Keeler, M.; Fortin, D.; Hodges, T.A.; Keeler, R.K.; Langstaff, R.; Lefebvre, M.; Lenckowski, M.; McPherson, R.; O'Neil, D.C.; Forbush, D.; Mockett, P.; Toevs, F.; Braun, H.M.; Thadome, J.

2002-01-01

Modules of the ATLAS liquid argon Hadronic End-cap Calorimeter (HEC) were exposed to beams of electrons, muons and pions in the energy range 6≤E≤200 GeV at the CERN SPS. A description of the HEC and of the beam test setup are given. Results on the energy response and resolution are presented and compared with simulations. The ATLAS energy resolution for jets in the end-cap region is inferred and meets the ATLAS requirements

Improving jet substructure performance in ATLAS with unified tracking and calorimeter inputs

CERN Document Server

Jansky, Roland; The ATLAS collaboration

2018-01-01

Jet substructure techniques play a critical role in ATLAS in searches for new physics, and are being utilized in the trigger. They become increasingly important in detailed studies of the Standard Model, among them the inclusive search for the Higgs boson produced with high transverse momentum decaying to a bottom-antibottom quark pair. To date, ATLAS has mostly focused on the use of calorimeter-based jet substructure, which works well for jets initiated by particles with low to moderate boost, but which lacks the angular resolution needed to resolve the desired substructure in the highly-boosted regime. We will present a novel approach designed to mitigate the calorimeter angular resolution limitations, thus providing superior performance to prior methods. Similar to previous methods, the superior angular resolution of the tracker is combined with information from the calorimeters. However, the new method is fundamentally different, as it correlates low-level objects as tracks and individual energy deposits ...

Online calibrations and performance of the ATLAS Pixel Detector

CERN Document Server

Keil, M; The ATLAS collaboration

2010-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN. It consists of 1744 silicon sensors equipped with approximately 80 M electronic channels, providing typically three measurement points with high resolution for particles emerging from the beam-interaction region, thus allowing measuring particle tracks and secondary vertices with very high precision. The readout system of the Pixel Detector is based on a bi-directional optical data transmission system between the detector and the data acquisition system with an individual link for each of the 1744 modules. Signal conversion components are located on both ends, approximately 80 m apart. The talk will give an overview of the calibration and performance of both the detector and its optical readout. The most basic parameter to be tuned and calibrated for the detector electronics is the readout threshold of the individual pixel channels. These need to be carefully tuned to optimise position resolution a...

Test of special resolution and trigger efficiency

CERN Document Server

Benhammou, Y

2015-01-01

The forthcoming luminosity upgrade of LHC to super-LHC (sLHC) will increase the expected background rate in the forward region of the ATLAS Muon Spectrometer by approximately the factor of five. Some of the present Muon Spectrometer components will fail to cope with these high rates and will have to be replaced. The results of a test of a device consisting of Thin Gap Chambers (TGC) and a fast small-diameter Muon Drift Tube Chamber (sMDT) using the 180 GeV/c muons at the SPS-H8 muon beam at CERN are presented. The goal of the test was to study the combined TGC-sMDT system as tracking and triggering device in the ATLAS muon spectrometer after high-luminosity upgrades of the LHC. The analysis of the recorded data shows a very good correlation between the TGC and sMDT track position and inclination. This technology offers the combination of trigger and tracking and has good angular and spatial resolutions. The angular resolution is 0.4 mrad for each system individually. For the spatial resolution, the width of t...

The new ATLAS Fast Calorimeter Simulation

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00176100; The ATLAS collaboration

2016-01-01

The physics and performance studies of the ATLAS detector at the Large Hadron Collider re- quire a large number of simulated events. A GEANT4 based detailed simulation of the ATLAS calorimeter systems is highly CPU intensive and such resolution is often unnecessary. To reduce the calorimeter simulation time by a few orders of magnitude, fast simulation tools have been developed. The Fast Calorimeter Simulation (FastCaloSim) provides a parameterised simulation of the particle energy response at the calorimeter read-out cell level. In Run 1, about 13 billion events were simulated in ATLAS, out of which 50% were produced using fast simulation. For Run 2, a new parameterisation is being developed to improve the original version: it incorporates developments in geometry and physics lists during the last five years and benefits from the knowledge acquired from the Run 1 data. The algorithm uses machine learning techniques to improve the parameterisations and to optimise the amount of information to be stored in the...

Performance of silicon pixel detectors at small track incidence angles for the ATLAS Inner Tracker upgrade

Energy Technology Data Exchange (ETDEWEB)

Viel, Simon, E-mail: sviel@lbl.gov [Physics Division, Lawrence Berkeley National Laboratory and University of California, Berkeley, CA, United States of America (United States); Banerjee, Swagato [Department of Physics, University of Wisconsin, Madison, WI, United States of America (United States); Brandt, Gerhard; Carney, Rebecca; Garcia-Sciveres, Maurice [Physics Division, Lawrence Berkeley National Laboratory and University of California, Berkeley, CA, United States of America (United States); Hard, Andrew Straiton; Kaplan, Laser Seymour; Kashif, Lashkar [Department of Physics, University of Wisconsin, Madison, WI, United States of America (United States); Pranko, Aliaksandr [Physics Division, Lawrence Berkeley National Laboratory and University of California, Berkeley, CA, United States of America (United States); Rieger, Julia [Physics Division, Lawrence Berkeley National Laboratory and University of California, Berkeley, CA, United States of America (United States); II Physikalisches Institut, Georg-August-Universität, Göttingen (Germany); Wolf, Julian [Physics Division, Lawrence Berkeley National Laboratory and University of California, Berkeley, CA, United States of America (United States); Wu, Sau Lan; Yang, Hongtao [Department of Physics, University of Wisconsin, Madison, WI, United States of America (United States)

2016-09-21

In order to enable the ATLAS experiment to successfully track charged particles produced in high-energy collisions at the High-Luminosity Large Hadron Collider, the current ATLAS Inner Detector will be replaced by the Inner Tracker (ITk), entirely composed of silicon pixel and strip detectors. An extension of the tracking coverage of the ITk to very forward pseudorapidity values is proposed, using pixel modules placed in a long cylindrical layer around the beam pipe. The measurement of long pixel clusters, detected when charged particles cross the silicon sensor at small incidence angles, has potential to significantly improve the tracking efficiency, fake track rejection, and resolution of the ITk in the very forward region. The performance of state-of-the-art pixel modules at small track incidence angles is studied using test beam data collected at SLAC and CERN. - Highlights: • Extended inner pixel barrel layers are proposed for the ATLAS ITk upgrade. • Test beam results at small track incidence angles validate this ATLAS ITk design. • Long pixel clusters are reconstructed with high efficiency at low threshold values. • Excellent angular resolution is achieved using pixel cluster length information.

Performance of silicon pixel detectors at small track incidence angles for the ATLAS Inner Tracker upgrade

International Nuclear Information System (INIS)

Viel, Simon; Banerjee, Swagato; Brandt, Gerhard; Carney, Rebecca; Garcia-Sciveres, Maurice; Hard, Andrew Straiton; Kaplan, Laser Seymour; Kashif, Lashkar; Pranko, Aliaksandr; Rieger, Julia; Wolf, Julian; Wu, Sau Lan; Yang, Hongtao

2016-01-01

In order to enable the ATLAS experiment to successfully track charged particles produced in high-energy collisions at the High-Luminosity Large Hadron Collider, the current ATLAS Inner Detector will be replaced by the Inner Tracker (ITk), entirely composed of silicon pixel and strip detectors. An extension of the tracking coverage of the ITk to very forward pseudorapidity values is proposed, using pixel modules placed in a long cylindrical layer around the beam pipe. The measurement of long pixel clusters, detected when charged particles cross the silicon sensor at small incidence angles, has potential to significantly improve the tracking efficiency, fake track rejection, and resolution of the ITk in the very forward region. The performance of state-of-the-art pixel modules at small track incidence angles is studied using test beam data collected at SLAC and CERN. - Highlights: • Extended inner pixel barrel layers are proposed for the ATLAS ITk upgrade. • Test beam results at small track incidence angles validate this ATLAS ITk design. • Long pixel clusters are reconstructed with high efficiency at low threshold values. • Excellent angular resolution is achieved using pixel cluster length information.

Spatiotemporal characterization of current and future droughts in the High Atlas basins (Morocco)

Science.gov (United States)

Zkhiri, Wiam; Tramblay, Yves; Hanich, Lahoucine; Jarlan, Lionel; Ruelland, Denis

2018-02-01

Over the past decades, drought has become a major concern in Morocco due to the importance of agriculture in the economy of the country. In the present work, the standardized precipitation index (SPI) is used to monitor the evolution, frequency, and severity of droughts in the High Atlas basins (N'Fis, Ourika, Rhéraya, Zat, and R'dat), located south of Marrakech city. The spatiotemporal characterization of drought in these basins is performed by computing the SPI with precipitation spatially interpolated over the catchments. The Haouz plain, located downstream of these basins, is strongly dependent on water provided by the mountain ranges, as shown by the positive correlations between the normalized difference vegetation index (NDVI) in the plain and the 3, 6, and 12-month SPI in the High Atlas catchments. On the opposite, no significant correlations are found with piezometric levels of the Haouz groundwater due to intensified pumping for irrigation in the recent decades. A relative SPI index was computed to evaluate the climate change impacts on drought occurrence, based on the projected precipitation (2006-2100) from five high-resolution CORDEX regional climate simulations, under two emission scenarios (RCP 4.5 and RCP 8.5). These models show a decrease in precipitation towards the future up to - 65% compared to the historical period. In terms of drought events, the future projections indicate a strong increase in the frequency of SPI events below - 2, considered as severe drought condition.

Variable resolution pattern generation for the Associative Memory of the ATLAS FTK project

CERN Document Server

Annovi, A; The ATLAS collaboration; Faulkner, G; Giannetti, P; Jiang, Z; Luongo, C; Pandini, C; Shochet, M; Tompkins, L; Volpi, G

2013-01-01

The Associative Memory (AM) chip is special device that allows to find coincidence patterns, or just patterns, between the incoming data in up to 8 parallel streams. The latest AM chip has been designed to receive silicon clusters generated in 8 layers of the ATLAS silicon detector sensor, to perform parallel track pattern matching at high rate and it will be the core of the FTK project. Data going through each of the busses are compared with a bank of patterns and AM chip looks for matches in each line, like commercial content addressable memory (CAM). The high density of hits expected in the ATLAS inner detector from 2015 put a challenge in the capability of the AM chip in rejecting random coincidences, requiring either an extremely high number of high precision patterns, with increasing costs and complexity of the system, or more flexible solutions. For this reason in the most recent prototype of the AM chip ternary cells have been added in the logic, allowing “don’t care” (DC) bits in the match. Hav...

Experimental study of the effect of hadron shower leakage on the energy response and resolution of ATLAS hadron barrel prototype calorimeter

International Nuclear Information System (INIS)

Budagov, Yu.A.; Vinogradov, V.B.; Kul'chitskij, Yu.A.; Rumyantsev, V.S.; Bogush, A.A.; Karapetyan, G.; Nessi, M.

1996-01-01

The hadronic shower longitudinal and lateral leakages and their effect on the pion response and energy resolution of ATLAS iron-scintillator barrel hadron prototype calorimeter have been investigated. The results are based on 100 GeV pion beam data at incidence angle Θ=10 deg. The fraction of the energy leaking out at the back of this calorimeter amounts to 1.8 % and agrees with the one for a conventional iron-scintillator calorimeter. Unexpected behaviour of the energy resolution as a function of leakage is observed: 6 % lateral leakage leads to 18 % improving of energy resolution in compare with the showers without leakage. 22 refs., 13 figs., 4 tabs

Optimizing the energy measurement of the ATLAS electromagnetic calorimeter

International Nuclear Information System (INIS)

Lampl, W.

2005-12-01

This PhD-thesis addresses the calibration of the ATLAS electromagnetic calorimeter. ATLAS is a high-energy physics experiment at the Large Hadron Collider (LHC) which is currently under construction at CERN in Geneva. LHC and ATLAS are foreseen to start up in 2007. In summer 2004, an extensive beam-test was carried out. This means that individual detector modules are exposed to a particle beam of known energy in order to verify the detector performance. At this occasion, all ATLAS subdetectors where operated together for the first time. The thesis contains a comprehensive description of the ATLAS electromagnetic calorimeter, the reconstruction software and the test-beam experiment that was carried out at CERN in 2004. Furthermore, the physics of the electromagnetic shower is discussed in detail. Data from the test beam as well as a detailed Monte-Carlo simulation are used to develop a novel energy-reconstruction method for the ATLAS EM calorimeter that achieves an excellent energy resolution (sampling term ∼ 11 %) as well as a very good linearity (< 0.4 %). Data taken during the beam test is also used to verify the accuracy of the simulation and to test the new energy-reconstruction method. (author)

High-resolution typing of Chlamydia trachomatis: epidemiological and clinical uses.

Science.gov (United States)

de Vries, Henry J C; Schim van der Loeff, Maarten F; Bruisten, Sylvia M

2015-02-01

A state-of-the-art overview of molecular Chlamydia trachomatis typing methods that are used for routine diagnostics and scientific studies. Molecular epidemiology uses high-resolution typing techniques such as multilocus sequence typing, multilocus variable number of tandem repeats analysis, and whole-genome sequencing to identify strains based on their DNA sequence. These data can be used for cluster, network and phylogenetic analyses, and are used to unveil transmission networks, risk groups, and evolutionary pathways. High-resolution typing of C. trachomatis strains is applied to monitor treatment efficacy and re-infections, and to study the recent emergence of lymphogranuloma venereum (LGV) amongst men who have sex with men in high-income countries. Chlamydia strain typing has clinical relevance in disease management, as LGV needs longer treatment than non-LGV C. trachomatis. It has also led to the discovery of a new variant Chlamydia strain in Sweden, which was not detected by some commercial C. trachomatis diagnostic platforms. After a brief history and comparison of the various Chlamydia typing methods, the applications of the current techniques are described and future endeavors to extend scientific understanding are formulated. High-resolution typing will likely help to further unravel the pathophysiological mechanisms behind the wide clinical spectrum of chlamydial disease.

Inner detector alignment and top-quark mass measurement with the ATLAS detector

CERN Document Server

Moles-Valls, Regina

This thesis is divided in two parts: one related with the alignment of the ATLAS Inner Detector tracking system and other with the measurement of the top-quark mass. Both topics are connected by the Globalχ2 fitting method. In order to measure the properties of the particles with high accuracy, the ID detector is composed by devices with high intrinsic resolution. If by any chance the position of the modules in the detector is known with worse precision than their intrinsic resolution this may introduce a distortion in the reconstructed trajectory of the particles or at least degrade the tracking resolution. The alignment is the responsible of determining the location of each module with high precision and avoiding therefore any bias in the physics results. During the commissioning of the detector, different alignment exercises were performed for preparing the Globalχ2 algorithm (the CSC , the FDR, weak modes studies,…). At the same time, the ATLAS detector was collecting million of cosmic rays which were...

Quantification of the fluorine containing drug 5-fluorouracil in cancer cells by GaF molecular absorption via high-resolution continuum source molecular absorption spectrometry

Science.gov (United States)

Krüger, Magnus; Huang, Mao-Dong; Becker-Roß, Helmut; Florek, Stefan; Ott, Ingo; Gust, Ronald

The development of high-resolution continuum source molecular absorption spectrometry made the quantification of fluorine feasible by measuring the molecular absorption as gallium monofluoride (GaF). Using this new technique, we developed on the example of 5-fluorouracil (5-FU) a graphite furnace method to quantify fluorine in organic molecules. The effect of 5-FU on the generation of the diatomic GaF molecule was investigated. The experimental conditions such as gallium nitrate amount, temperature program, interfering anions (represented as corresponding acids) and calibration for the determination of 5-FU in standard solution and in cellular matrix samples were investigated and optimized. The sample matrix showed no effect on the sensitivity of GaF molecular absorption. A simple calibration curve using an inorganic sodium fluoride solution can conveniently be used for the calibration. The described method is sensitive and the achievable limit of detection is 0.23 ng of 5-FU. In order to establish the concept of "fluorine as a probe in medicinal chemistry" an exemplary application was selected, in which the developed method was successfully demonstrated by performing cellular uptake studies of the 5-FU in human colon carcinoma cells.

AN ATLAS OF BRIGHT STAR SPECTRA IN THE NEAR-INFRARED FROM CASSINI-VIMS

International Nuclear Information System (INIS)

Stewart, Paul N.; Tuthill, Peter G.; Nicholson, Philip D.; Sloan, G. C.; Hedman, Matthew M.

2015-01-01

We present the Cassini Atlas Of Stellar Spectra (CAOSS), comprised of near-infrared, low-resolution spectra of bright stars recovered from space-based observations by the Cassini spacecraft. The 65 stellar targets in the atlas are predominately M, K, and S giants. However, it also contains spectra of other bright nearby stars including carbon stars and main-sequence stars from A to F. The spectra presented are free of all spectral contamination caused by the Earth's atmosphere, including the detrimental telluric molecular bands which put parts of the near-infrared spectrum out of reach of terrestrial observations. With a single instrument, a spectro-photometric data set is recovered that spans the near-infrared from 0.8 to 5.1 μm with spectral resolution ranging from R = 53.5 to R = 325. Spectra have been calibrated into absolute flux units after careful characterization of the instrumental spectral efficiency. Spectral energy distributions for most stars match closely with literature values. All final data products have been made available online

AN ATLAS OF BRIGHT STAR SPECTRA IN THE NEAR-INFRARED FROM CASSINI-VIMS

Energy Technology Data Exchange (ETDEWEB)

Stewart, Paul N.; Tuthill, Peter G. [Sydney Institute for Astronomy, School of Physics, The University of Sydney, NSW 2006 (Australia); Nicholson, Philip D. [Department of Astronomy, Cornell University, Ithaca, NY 14853 (United States); Sloan, G. C. [Cornell Center for Astrophyics and Planetary Science, Cornell University, Ithaca, NY 14853 (United States); Hedman, Matthew M., E-mail: p.stewart@physics.usyd.edu.au [Department of Physics, University of Idaho, Moscow, ID 83844 (United States)

2015-12-15

We present the Cassini Atlas Of Stellar Spectra (CAOSS), comprised of near-infrared, low-resolution spectra of bright stars recovered from space-based observations by the Cassini spacecraft. The 65 stellar targets in the atlas are predominately M, K, and S giants. However, it also contains spectra of other bright nearby stars including carbon stars and main-sequence stars from A to F. The spectra presented are free of all spectral contamination caused by the Earth's atmosphere, including the detrimental telluric molecular bands which put parts of the near-infrared spectrum out of reach of terrestrial observations. With a single instrument, a spectro-photometric data set is recovered that spans the near-infrared from 0.8 to 5.1 μm with spectral resolution ranging from R = 53.5 to R = 325. Spectra have been calibrated into absolute flux units after careful characterization of the instrumental spectral efficiency. Spectral energy distributions for most stars match closely with literature values. All final data products have been made available online.

The challenge of building large area, high precision small-strip Thin Gap Trigger Chambers for the upgrade of the ATLAS experiment

CERN Document Server

Maleev, Victor; The ATLAS collaboration

2015-01-01

The current innermost stations of the ATLAS muon endcap system must be upgraded in 2018 and 2019 to retain the good precision tracking and trigger capabilities in the high background environment expected with the upcoming luminosity increase of the LHC. Large area small-strip Thin Gap Chambers (sTGC) up to 2 m2 in size and totaling an active area of 1200 m2 will be employed for fast and precise triggering. The precision reconstruction of tracks requires a spatial resolution of about 100 μm to allow the Level-1 trigger track segments to be reconstructed with an angular resolution of 1mrad. The upgraded detector will consist of eight layers each of Micromegas and sTGC’s detectors together forming the ATLAS New Small Wheels. The position of each strip must be known with an accuracy of 30 µm along the precision coordinate and 80 µm along the beam. On such large area detectors, the mechanical precision is a key point and then must be controlled and monitored all along the process of construction and integrati...

The Challenge of Building Large Area, High Precision Small-Strip Thin Gap Trigger Chambers for the Upgrade of the ATLAS Experiment

CERN Document Server

Maleev, Victor; The ATLAS collaboration

2015-01-01

The current innermost stations of the ATLAS muon end-cap system must be upgraded in 2018 and 2019 to retain the good precision tracking and trigger capabilities in the high background environment expected with the upcoming luminosity increase of the LHC. Large area small-strip Thin Gap Chambers (sTGC) up to 2 $m^2$ in size and totaling an active area of 1200 $m^2$ will be employed for fast and precise triggering. The precision reconstruction of tracks requires a spatial resolution of about 100 $\\mu m$ while the Level-1 trigger track segments need to be reconstructed with an angular resolution of 1 mrad. The upgraded detector will consist of eight layers each of Micromegas and sTGC’s detectors together forming the ATLAS New Small Wheels. The position of each strip must be known with an accuracy of 40 $\\mu m$ along the precision coordinate and 80 $\\mu m$ along the beam. On such large area detectors, the mechanical precision is a key point and then must be controlled and monitored all along the process of cons...

High-resolution structure of the native histone octamer

International Nuclear Information System (INIS)

Wood, Christopher M.; Nicholson, James M.; Lambert, Stanley J.; Chantalat, Laurent; Reynolds, Colin D.; Baldwin, John P.

2005-01-01

The high-resolution (1.90 Å) model of the native histone octamer allows structural comparisons to be made with the nucleosome-core particle, along with an identification of a likely core-histone binding site. Crystals of native histone octamers (H2A–H2B)–(H4–H3)–(H3′–H4′)–(H2B′–H2A′) from chick erythrocytes in 2 M KCl, 1.35 M potassium phosphate pH 6.9 diffract X-rays to 1.90 Å resolution, yielding a structure with an R work value of 18.7% and an R free of 22.2%. The crystal space group is P6 5 , the asymmetric unit of which contains one complete octamer. This high-resolution model of the histone-core octamer allows further insight into intermolecular interactions, including water molecules, that dock the histone dimers to the tetramer in the nucleosome-core particle and have relevance to nucleosome remodelling. The three key areas analysed are the H2A′–H3–H4 molecular cluster (also H2A–H3′–H4′), the H4–H2B′ interaction (also H4′–H2B) and the H2A′–H4 β-sheet interaction (also H2A–H4′). The latter of these three regions is important to nucleosome remodelling by RNA polymerase II, as it is shown to be a likely core-histone binding site, and its disruption creates an instability in the nucleosome-core particle. A majority of the water molecules in the high-resolution octamer have positions that correlate to similar positions in the high-resolution nucleosome-core particle structure, suggesting that the high-resolution octamer model can be used for comparative studies with the high-resolution nucleosome-core particle

The high resolution melting analysis (HRM) as a molecular tool for monitoring parasites of the wildlife.

Science.gov (United States)

Héritier, Laurent; Verneau, Olivier; Breuil, Gregory; Meistertzheim, Anne-Leila

2017-04-01

In an interconnected world, the international pet trade on wild animals is becoming increasingly important. As a consequence, non-native parasite species are introduced, which affect the health of wildlife and contribute to the loss of biodiversity. Because the investigation of parasite diversity within vulnerable host species implies the molecular identification of large samples of parasite eggs, the sequencing of DNA barcodes is time-consuming and costly. Thereby, the objectives of our study were to apply the high resolution melting (HRM) approach for species determination from pools of parasite eggs. Molecular assays were validated on flatworm parasites (polystomes) infecting the Mediterranean pond turtle Mauremys leprosa and the invasive red-eared slider Trachemys scripta elegans in French natural environments. HRM analysis results indicated that double or multiple parasitic infections could be detected from wild animal populations. They also showed that the cycle of parasite eggs production was not regular over time and may depend on several factors, among which the ecological niche and the target species. Thereby, monitoring parasites from wild endangered animals implies periodic parasitological surveys to avoid false negative diagnostics, based solely on eggs production.

EnviroAtlas - Des Moines, IA - Meter-Scale Urban Land Cover (MULC) Data (2010)

Data.gov (United States)

U.S. Environmental Protection Agency — The Des Moines, IA EnviroAtlas Meter-Scale Urban Land Cover (MULC) Data were generated from the High Resolution Land Cover (HRLC) product created by the Iowa...

High-rate irradiation of 15mm muon drift tubes and development of an ATLAS compatible readout driver for micromegas detectors

CERN Document Server

Zibell, Andre

The upcoming luminosity upgrades of the LHC accelerator at CERN demand several upgrades to the detectors of the ATLAS muon spectrometer, mainly due to the proportionally increasing rate of uncorrelated background irradiation. This concerns also the "Small Wheel" tracking stations of the ATLAS muon spectrometer, where precise muon track reconstruction will no longer be assured when around 2020 the LHC luminosity is expected to reach values 2 to 5 times the design luminosity of $1 \\times 10^{34} \\text{cm}^{-2}\\text{s}^{-1}$, and when background hit rates will exceed 10 kHz/cm$^2$. This, together with the need of an additional triggering station in this area with an angular resolution of 1 mrad, requires the construction of "New Small Wheel" detectors for a complete replacement during the long maintenance period in 2018 and 2019. As possible technology for these New Small Wheels, high-rate capable sMDT drift tubes have been investigated, based on the ATLAS 30 mm Monitored Drift Tube technology, but with a smalle...

ATLAS Forward Proton (AFP) time-of-flight (ToF) detector: construction & existing experiences

CERN Document Server

Sykora, Tomas; The ATLAS collaboration

2018-01-01

In 2017 the ATLAS collaboration successfully completed the installation of the ATLAS Forward Proton (AFP) detector to measure diffractive protons leaving under very small angles (hundreds of micro radians) the ATLAS proton-proton interaction point. The AFP tags and measures forward protons scattered in single diffraction or hard central diffraction, where two protons are emitted and a central system is created. In addition, the AFP has a potential to measure two-photon exchange processes, and to be sensitive to eventual anomalous quartic couplings of Vector Bosons: γγW+W−, γγZZ, and γγγγ. Such measurements at high luminosities will be possible only due the combination of high resolution tracking (semi-edgeless 3D Silicon pixel) detectors and ultra-high precision ToF (Quartz-Cherenkov) detectors at both sides of the ATLAS detector. The ToF detector construction and experiences with its operation represent the subject of the talk.

Improving jet substructure performance in ATLAS using Track-CaloClusters

CERN Document Server

The ATLAS collaboration

2017-01-01

Jet substructure techniques play a critical role in ATLAS in searches for new physics, are increasingly important in measurements of the Standard Model, and are being utilized in the trigger. To date, ATLAS has mostly focused on the use of calorimeter-based jet substructure, which works well for jets initiated by particles with low to moderate boost, but which lacks the angular resolution needed to resolve the desired substructure in the highly-boosted regime. We present a novel approach designed to mitigate the calorimeter angular resolution limitations, thus providing superior performance to prior methods. Similarly to the previously developed combined mass technique, the superior angular resolution of the tracker is combined with information from the calorimeters. However, the new method is fundamentally different, as it correlates low-level objects such as tracks and individual energy deposits in the calorimeter, before running any jet finding algorithms. The resulting objects are used as inputs to jet re...

A high resolution β-detector

International Nuclear Information System (INIS)

Charon, Y.; Cuzon, J.C.; Tricoire, H.; Valentin, L.

1987-01-01

We present a detector which associates a charge coupled device to a light amplifier. This image sensor must detect weak β-activity, with a 10 μm resolution and should replace the autoradiographic films used for molecular hybridization. The best results are obtained with the 35 S emittor, for which the resolution and the efficiency are respectively 20 μm and 100% (relative to the measured standard source)

Study of the performance of the Micromegas chambers for the ATLAS Muon Spectrometer upgrade

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00237763; The ATLAS Muon collaboration

2017-01-01

Micromegas (MICRO MEsh GAseous Structure) chambers are Micro-Pattern Gaseous Detectors designed to provide a high spatial resolution in highly irradiated environments. In 2007 an ambitious long-term R&D activity was started in the context of the ATLAS experiment, at CERN: the Muon ATLAS Micromegas Activity (MAMMA). After years of tests on prototypes and technology breakthroughs, Micromegas chambers were chosen as tracking detectors for an upgrade of the ATLAS Muon Spectrometer. These novel detectors will be installed in 2018 and 2019 during the second long shutdown of the Large Hadron Collider, and will serve as precision detectors in the innermost part of the ATLAS Muon Spectrometer. Eight layers of Micromegas modules of unprecedented size, up to 3 $\\rm{{m^2}}$, will cover a surface of 150 $\\rm{{m^2}}$ for a total active area of about 1200 $\\rm{{m^2}}$. This upgrade will be crucial to ensure high quality performance for the ATLAS Muon Spectrometer in view of the third run of the Large Hadron Collider and...

ATLAS Plans for the High-Luminosity LHC

CERN Document Server

Walkowiak, Wolfgang; The ATLAS collaboration

2018-01-01

In this talk for BEAUTY 2018 the ATLAS upgrade plans for the high-luminosity phase of the LHC are presented. Especially, prospects for the flagship B physics analyses $B_s^0 \\to J/\\psi \\phi$ (with $J/\\psi \\to \\mu^+\\mu^-$) and $B_{(s)}^0 \\to \\mu^+\\mu^-$ analyses are discussed.

Jet energy resolution in proton-proton collisions at $\\sqrt{s}$ = 7 TeV recorded in 2010 with the ATLAS detector

CERN Document Server

Aad, Georges; Abbott, Brad; Abdallah, Jalal; Abdel Khalek, Samah; Abdelalim, Ahmed Ali; Abdinov, Ovsat; Aben, Rosemarie; Abi, Babak; Abolins, Maris; AbouZeid, Ossama; Abramowicz, Halina; Abreu, Henso; Acerbi, Emilio; Acharya, Bobby Samir; Adamczyk, Leszek; Adams, David; Addy, Tetteh; Adelman, Jahred; Adomeit, Stefanie; Adragna, Paolo; Adye, Tim; Aefsky, Scott; Aguilar-Saavedra, Juan Antonio; Agustoni, Marco; Aharrouche, Mohamed; Ahlen, Steven; Ahles, Florian; Ahmad, Ashfaq; Ahsan, Mahsana; Aielli, Giulio; Akdogan, Taylan; Åkesson, Torsten Paul Ake; Akimoto, Ginga; Akimov, Andrei; Alam, Mohammad; Alam, Muhammad Aftab; Albert, Justin; Albrand, Solveig; Aleksa, Martin; Aleksandrov, Igor; Alessandria, Franco; Alexa, Calin; Alexander, Gideon; Alexandre, Gauthier; Alexopoulos, Theodoros; Alhroob, Muhammad; Aliev, Malik; Alimonti, Gianluca; Alison, John; Allbrooke, Benedict; Allport, Phillip; Allwood-Spiers, Sarah; Almond, John; Aloisio, Alberto; Alon, Raz; Alonso, Alejandro; Alonso, Francisco; 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Hellman, Sten; Hellmich, Dennis; Helsens, Clement; Henderson, Robert; Henke, Michael; Henrichs, Anna; Henriques Correia, Ana Maria; Henrot-Versille, Sophie; Hensel, Carsten; Henß, Tobias; Medina Hernandez, Carlos; Hernández Jiménez, Yesenia; Herrberg, Ruth; Herten, Gregor; Hertenberger, Ralf; Hervas, Luis; Hesketh, Gavin Grant; Hessey, Nigel; Higón-Rodriguez, Emilio; Hill, John; Hiller, Karl Heinz; Hillert, Sonja; Hillier, Stephen; Hinchliffe, Ian; Hines, Elizabeth; Hirose, Minoru; Hirsch, Florian; Hirschbuehl, Dominic; Hobbs, John; Hod, Noam; Hodgkinson, Mark; Hodgson, Paul; Hoecker, Andreas; Hoeferkamp, Martin; Hoffman, Julia; Hoffmann, Dirk; Hohlfeld, Marc; Holder, Martin; Holmgren, Sven-Olof; Holy, Tomas; Holzbauer, Jenny; Hong, Tae Min; Hooft van Huysduynen, Loek; Horn, Claus; Horner, Stephan; Hostachy, Jean-Yves; Hou, Suen; Hoummada, Abdeslam; Howard, Jacob; Howarth, James; Hristova, Ivana; Hrivnac, Julius; Hryn'ova, Tetiana; Hsu, Pai-hsien Jennifer; Hsu, Shih-Chieh; Hubacek, Zdenek; Hubaut, Fabrice; Huegging, Fabian; Huettmann, Antje; Huffman, Todd Brian; Hughes, Emlyn; Hughes, Gareth; Huhtinen, Mika; Hurwitz, Martina; Husemann, Ulrich; Huseynov, Nazim; Huston, Joey; Huth, John; Iacobucci, Giuseppe; Iakovidis, Georgios; Ibbotson, Michael; Ibragimov, Iskander; Iconomidou-Fayard, Lydia; Idarraga, John; Iengo, Paolo; Igonkina, Olga; Ikegami, Yoichi; Ikeno, Masahiro; Iliadis, Dimitrios; Ilic, Nikolina; Ince, Tayfun; Inigo-Golfin, Joaquin; Ioannou, Pavlos; Iodice, Mauro; Iordanidou, Kalliopi; Ippolito, Valerio; Irles Quiles, Adrian; Isaksson, Charlie; Ishino, Masaya; Ishitsuka, Masaki; Ishmukhametov, Renat; Issever, Cigdem; Istin, Serhat; Ivashin, Anton; Iwanski, Wieslaw; Iwasaki, Hiroyuki; Izen, Joseph; Izzo, Vincenzo; Jackson, Brett; Jackson, John; Jackson, Paul; Jaekel, Martin; Jain, Vivek; Jakobs, Karl; Jakobsen, Sune; Jakoubek, Tomas; Jakubek, Jan; Jana, Dilip; Jansen, Eric; Jansen, Hendrik; Jantsch, Andreas; Janus, Michel; Jarlskog, Göran; Jeanty, Laura; Jen-La Plante, Imai; Jennens, David; Jenni, Peter; Loevschall-Jensen, Ask Emil; Jež, Pavel; Jézéquel, Stéphane; Jha, Manoj Kumar; Ji, Haoshuang; Ji, Weina; Jia, Jiangyong; Jiang, Yi; Jimenez Belenguer, Marcos; Jin, Shan; Jinnouchi, Osamu; Joergensen, Morten Dam; Joffe, David; Johansen, Marianne; Johansson, Erik; Johansson, Per; Johnert, Sebastian; Johns, Kenneth; Jon-And, Kerstin; Jones, Graham; Jones, Roger; Jones, Tim; Joram, Christian; Jorge, Pedro; Joshi, Kiran Daniel; Jovicevic, Jelena; Jovin, Tatjana; Ju, Xiangyang; Jung, Christian; Jungst, Ralph Markus; Juranek, Vojtech; Jussel, Patrick; Juste Rozas, Aurelio; Kabana, Sonja; Kaci, Mohammed; Kaczmarska, Anna; Kadlecik, Peter; Kado, Marumi; Kagan, Harris; Kagan, Michael; Kajomovitz, Enrique; Kalinin, Sergey; Kalinovskaya, Lidia; Kama, Sami; Kanaya, Naoko; Kaneda, Michiru; Kaneti, Steven; Kanno, Takayuki; Kantserov, Vadim; Kanzaki, Junichi; Kaplan, Benjamin; Kapliy, Anton; Kaplon, Jan; Kar, Deepak; Karagounis, Michael; Karakostas, Konstantinos; Karnevskiy, Mikhail; Kartvelishvili, Vakhtang; Karyukhin, Andrey; Kashif, Lashkar; Kasieczka, Gregor; Kass, Richard; Kastanas, Alex; Kataoka, Mayuko; Kataoka, Yousuke; Katsoufis, Elias; Katzy, Judith; Kaushik, Venkatesh; Kawagoe, Kiyotomo; Kawamoto, Tatsuo; Kawamura, Gen; Kayl, Manuel; Kazama, Shingo; Kazanin, Vassili; Kazarinov, Makhail; Keeler, Richard; Kehoe, Robert; Keil, Markus; Kekelidze, George; Keller, John; Kenyon, Mike; Kepka, Oldrich; Kerschen, Nicolas; Kerševan, Borut Paul; Kersten, Susanne; Kessoku, Kohei; Keung, Justin; Khalil-zada, Farkhad; Khandanyan, Hovhannes; Khanov, Alexander; Kharchenko, Dmitri; Khodinov, Alexander; Khomich, Andrei; Khoo, Teng Jian; Khoriauli, Gia; Khoroshilov, Andrey; Khovanskiy, Valery; Khramov, Evgeniy; Khubua, Jemal; Kim, Hyeon Jin; Kim, Shinhong; Kimura, Naoki; Kind, Oliver; King, Barry; King, Matthew; King, Robert Steven Beaufoy; Kirk, Julie; Kiryunin, Andrey; Kishimoto, Tomoe; Kisielewska, Danuta; Kitamura, Takumi; Kittelmann, Thomas; Kladiva, Eduard; Klein, Max; Klein, Uta; Kleinknecht, Konrad; Klemetti, Miika; Klier, Amit; Klimek, Pawel; Klimentov, Alexei; Klingenberg, Reiner; Klinger, Joel Alexander; Klinkby, Esben; Klioutchnikova, Tatiana; Klok, Peter; Klous, Sander; Kluge, Eike-Erik; Kluge, Thomas; Kluit, Peter; Kluth, Stefan; Knecht, Neil; Kneringer, Emmerich; Knoops, Edith; Knue, Andrea; Ko, Byeong Rok; Kobayashi, Tomio; Kobel, Michael; Kocian, Martin; Kodys, Peter; Köneke, Karsten; König, Adriaan; Koenig, Sebastian; Köpke, Lutz; Koetsveld, Folkert; Koevesarki, Peter; Koffas, Thomas; Koffeman, Els; Kogan, Lucy Anne; Kohlmann, Simon; Kohn, Fabian; Kohout, Zdenek; Kohriki, Takashi; Koi, Tatsumi; Kolachev, Guennady; Kolanoski, Hermann; Kolesnikov, Vladimir; Koletsou, Iro; Koll, James; Kollefrath, Michael; Komar, Aston; Komori, Yuto; Kondo, Takahiko; Kono, Takanori; Kononov, Anatoly; Konoplich, Rostislav; Konstantinidis, Nikolaos; Koperny, Stefan; Korcyl, Krzysztof; Kordas, Kostantinos; Korn, Andreas; Korol, Aleksandr; Korolkov, Ilya; Korolkova, Elena; Korotkov, Vladislav; Kortner, Oliver; Kortner, Sandra; Kostyukhin, Vadim; Kotov, Sergey; Kotov, Vladislav; Kotwal, Ashutosh; Kourkoumelis, Christine; Kouskoura, Vasiliki; Koutsman, Alex; Kowalewski, Robert Victor; Kowalski, Tadeusz; Kozanecki, Witold; Kozhin, Anatoly; Kral, Vlastimil; Kramarenko, Viktor; Kramberger, Gregor; Krasny, Mieczyslaw Witold; Krasznahorkay, Attila; Kraus, Jana; Kreiss, Sven; Krejci, Frantisek; Kretzschmar, Jan; Krieger, Nina; Krieger, Peter; Kroeninger, Kevin; Kroha, Hubert; Kroll, Joe; Kroseberg, Juergen; Krstic, Jelena; Kruchonak, Uladzimir; Krüger, Hans; Kruker, Tobias; Krumnack, Nils; Krumshteyn, Zinovii; Kubota, Takashi; Kuday, Sinan; Kuehn, Susanne; Kugel, Andreas; Kuhl, Thorsten; Kuhn, Dietmar; Kukhtin, Victor; Kulchitsky, Yuri; Kuleshov, Sergey; Kummer, Christian; Kuna, Marine; Kunkle, Joshua; Kupco, Alexander; Kurashige, Hisaya; Kurata, Masakazu; Kurochkin, Yurii; Kus, Vlastimil; Kuwertz, Emma Sian; Kuze, Masahiro; Kvita, Jiri; Kwee, Regina; La Rosa, Alessandro; La Rotonda, Laura; Labarga, Luis; Labbe, Julien; Lablak, Said; Lacasta, Carlos; Lacava, Francesco; Lacker, Heiko; Lacour, Didier; Lacuesta, Vicente Ramón; Ladygin, Evgueni; Lafaye, Remi; Laforge, Bertrand; Lagouri, Theodota; Lai, Stanley; Laisne, Emmanuel; Lamanna, Massimo; Lambourne, Luke; Lampen, Caleb; Lampl, Walter; Lancon, Eric; Landgraf, Ulrich; Landon, Murrough; Lane, Jenna; Lang, Valerie Susanne; Lange, Clemens; Lankford, Andrew; Lanni, Francesco; Lantzsch, Kerstin; Laplace, Sandrine; Lapoire, Cecile; Laporte, Jean-Francois; Lari, Tommaso; Larner, Aimee; Lassnig, Mario; Laurelli, Paolo; Lavorini, Vincenzo; Lavrijsen, Wim; Laycock, Paul; Le Dortz, Olivier; Le Guirriec, Emmanuel; Le Maner, Christophe; Le Menedeu, Eve; LeCompte, Thomas; Ledroit-Guillon, Fabienne Agnes Marie; Lee, Hurng-Chun; Lee, Jason; Lee, Shih-Chang; Lee, Lawrence; Lefebvre, Michel; Legendre, Marie; Legger, Federica; Leggett, Charles; Lehmacher, Marc; Lehmann Miotto, Giovanna; Lei, Xiaowen; Leite, Marco Aurelio Lisboa; Leitner, Rupert; Lellouch, Daniel; Lemmer, Boris; Lendermann, Victor; Leney, Katharine; Lenz, Tatiana; Lenzen, Georg; Lenzi, Bruno; Leonhardt, Kathrin; Leontsinis, Stefanos; Lepold, Florian; Leroy, Claude; Lessard, Jean-Raphael; Lester, Christopher; Lester, Christopher Michael; Levêque, Jessica; Levin, Daniel; Levinson, Lorne; Lewis, Adrian; Lewis, George; Leyko, Agnieszka; Leyton, Michael; Li, Bo; Li, Haifeng; Li, Shu; Li, Xuefei; Liang, Zhijun; Liao, Hongbo; Liberti, Barbara; Lichard, Peter; Lichtnecker, Markus; Lie, Ki; Liebig, Wolfgang; Limbach, Christian; Limosani, Antonio; Limper, Maaike; Lin, Simon; Linde, Frank; Linnemann, James; Lipeles, Elliot; Lipniacka, Anna; Liss, Tony; Lissauer, David; Lister, Alison; Litke, Alan; Liu, Chuanlei; Liu, Dong; Liu, Hao; Liu, Jianbei; Liu, Lulu; Liu, Minghui; Liu, Yanwen; Livan, Michele; Livermore, Sarah; Lleres, Annick; Llorente Merino, Javier; Lloyd, Stephen; Lobodzinska, Ewelina; Loch, Peter; Lockman, William; Loddenkoetter, Thomas; Loebinger, Fred; Loginov, Andrey; Loh, Chang Wei; Lohse, Thomas; Lohwasser, Kristin; Lokajicek, Milos; Lombardo, Vincenzo Paolo; Long, Robin Eamonn; Lopes, Lourenco; Lopez Mateos, David; Lorenz, Jeanette; Lorenzo Martinez, Narei; Losada, Marta; Loscutoff, Peter; Lo Sterzo, Francesco; Losty, Michael; Lou, Xinchou; Lounis, Abdenour; Loureiro, Karina; Love, Jeremy; Love, Peter; Lowe, Andrew; Lu, Feng; Lubatti, Henry; Luci, Claudio; Lucotte, Arnaud; Ludwig, Andreas; Ludwig, Dörthe; Ludwig, Inga; Ludwig, Jens; Luehring, Frederick; Luijckx, Guy; Lukas, Wolfgang; Lumb, Debra; Luminari, Lamberto; Lund, Esben; Lund-Jensen, Bengt; Lundberg, Björn; Lundberg, Johan; Lundberg, Olof; Lundquist, Johan; Lungwitz, Matthias; Lynn, David; Lytken, Else; Ma, Hong; Ma, Lian Liang; Maccarrone, Giovanni; Macchiolo, Anna; Maček, Boštjan; Machado Miguens, Joana; Mackeprang, Rasmus; Madaras, Ronald; Maddocks, Harvey Jonathan; Mader, Wolfgang; Maenner, Reinhard; Maeno, Tadashi; Mättig, Peter; Mättig, Stefan; Magnoni, Luca; Magradze, Erekle; Mahboubi, Kambiz; Mahmoud, Sara; Mahout, Gilles; Maiani, Camilla; Maidantchik, Carmen; Maio, Amélia; Majewski, Stephanie; Makida, Yasuhiro; Makovec, Nikola; Mal, Prolay; Malaescu, Bogdan; Malecki, Pawel; Malecki, Piotr; Maleev, Victor; Malek, Fairouz; Mallik, Usha; Malon, David; Malone, Caitlin; Maltezos, Stavros; Malyshev, Vladimir; Malyukov, Sergei; Mameghani, Raphael; Mamuzic, Judita; Manabe, Atsushi; Mandelli, Luciano; Mandić, Igor; Mandrysch, Rocco; Maneira, José; Mangeard, Pierre-Simon; Manhaes de Andrade Filho, Luciano; Manjarres Ramos, Joany Andreina; Mann, Alexander; Manning, Peter; Manousakis-Katsikakis, Arkadios; Mansoulie, Bruno; Mapelli, Alessandro; Mapelli, Livio; March, Luis; Marchand, Jean-Francois; Marchese, Fabrizio; Marchiori, Giovanni; Marcisovsky, Michal; Marino, Christopher; Marroquim, Fernando; Marshall, Zach; Martens, Kalen; Marti, Lukas Fritz; Marti-Garcia, Salvador; Martin, Brian; Martin, Brian Thomas; Martin, Jean-Pierre; Martin, Tim; Martin, Victoria Jane; Martin dit Latour, Bertrand; Martin-Haugh, Stewart; Martinez, Mario; Martinez Outschoorn, Verena; Martyniuk, Alex; Marx, Marilyn; Marzano, Francesco; Marzin, Antoine; Masetti, Lucia; Mashimo, Tetsuro; Mashinistov, Ruslan; Masik, Jiri; Maslennikov, Alexey; Massa, Ignazio; Massaro, Graziano; Massol, Nicolas; Mastrandrea, Paolo; Mastroberardino, Anna; Masubuchi, Tatsuya; Matricon, Pierre; Matsunaga, Hiroyuki; Matsushita, Takashi; Mattravers, Carly; Maurer, Julien; Maxfield, Stephen; Mayne, Anna; Mazini, Rachid; Mazur, Michael; Mazzaferro, Luca; Mazzanti, Marcello; Mc Kee, Shawn Patrick; McCarn, Allison; McCarthy, Robert; McCarthy, Tom; McCubbin, Norman; McFarlane, Kenneth; Mcfayden, Josh; Mchedlidze, Gvantsa; Mclaughlan, Tom; McMahon, Steve; McPherson, Robert; Meade, Andrew; Mechnich, Joerg; Mechtel, Markus; Medinnis, Mike; Meera-Lebbai, Razzak; Meguro, Tatsuma; Mehdiyev, Rashid; Mehlhase, Sascha; Mehta, Andrew; Meier, Karlheinz; Meirose, Bernhard; Melachrinos, Constantinos; Mellado Garcia, Bruce Rafael; Meloni, Federico; Mendoza Navas, Luis; Meng, Zhaoxia; Mengarelli, Alberto; Menke, Sven; Meoni, Evelin; Mercurio, Kevin Michael; Mermod, Philippe; Merola, Leonardo; Meroni, Chiara; Merritt, Frank; Merritt, Hayes; Messina, Andrea; Metcalfe, Jessica; Mete, Alaettin Serhan; Meyer, Carsten; Meyer, Christopher; Meyer, Jean-Pierre; Meyer, Jochen; Meyer, Joerg; Meyer, Thomas Christian; Miao, Jiayuan; Michal, Sebastien; Micu, Liliana; Middleton, Robin; Migas, Sylwia; Mijović, Liza; Mikenberg, Giora; Mikestikova, Marcela; Mikuž, Marko; Miller, David; Miller, Robert; Mills, Bill; Mills, Corrinne; Milov, Alexander; Milstead, David; Milstein, Dmitry; Minaenko, Andrey; Miñano Moya, Mercedes; Minashvili, Irakli; Mincer, Allen; Mindur, Bartosz; Mineev, Mikhail; Ming, Yao; Mir, Lluisa-Maria; Mirabelli, Giovanni; Mitrevski, Jovan; Mitsou, Vasiliki A; Mitsui, Shingo; Miyagawa, Paul; Mjörnmark, Jan-Ulf; Moa, Torbjoern; Moeller, Victoria; Mönig, Klaus; Möser, Nicolas; Mohapatra, Soumya; Mohr, Wolfgang; Moles-Valls, Regina; Monk, James; Monnier, Emmanuel; Montejo Berlingen, Javier; Monticelli, Fernando; Monzani, Simone; Moore, Roger; Moorhead, Gareth; Mora Herrera, Clemencia; Moraes, Arthur; Morange, Nicolas; Morel, Julien; Morello, Gianfranco; Moreno, Deywis; Moreno Llácer, María; Morettini, Paolo; Morgenstern, Marcus; Morii, Masahiro; Morley, Anthony Keith; Mornacchi, Giuseppe; Morris, John; Morvaj, Ljiljana; Moser, Hans-Guenther; Mosidze, Maia; Moss, Josh; Mount, Richard; Mountricha, Eleni; Mouraviev, Sergei; Moyse, Edward; Mueller, Felix; Mueller, James; Mueller, Klemens; Müller, Thomas; Mueller, Timo; Muenstermann, Daniel; Munwes, Yonathan; Murray, Bill; Mussche, Ido; Musto, Elisa; Myagkov, Alexey; Myska, Miroslav; Nadal, Jordi; Nagai, Koichi; Nagai, Ryo; Nagano, Kunihiro; Nagarkar, Advait; Nagasaka, Yasushi; Nagel, Martin; Nairz, Armin Michael; Nakahama, Yu; Nakamura, Koji; Nakamura, Tomoaki; Nakano, Itsuo; Nanava, Gizo; Napier, Austin; Narayan, Rohin; Nash, Michael; Nattermann, Till; Naumann, Thomas; Navarro, Gabriela; Neal, Homer; Nechaeva, Polina; Neep, Thomas James; Negri, Andrea; Negri, Guido; Negrini, Matteo; Nektarijevic, Snezana; Nelson, Andrew; Nelson, Timothy Knight; Nemecek, Stanislav; Nemethy, Peter; Nepomuceno, Andre Asevedo; Nessi, Marzio; Neubauer, Mark; Neumann, Manuel; Neusiedl, Andrea; Neves, Ricardo; Nevski, Pavel; Newman, Paul; Nguyen Thi Hong, Van; Nickerson, Richard; Nicolaidou, Rosy; Nicquevert, Bertrand; Niedercorn, Francois; Nielsen, Jason; Nikiforou, Nikiforos; Nikiforov, Andriy; Nikolaenko, Vladimir; Nikolic-Audit, Irena; Nikolics, Katalin; Nikolopoulos, Konstantinos; Nilsen, Henrik; Nilsson, Paul; Ninomiya, Yoichi; Nisati, Aleandro; Nisius, Richard; Nobe, Takuya; Nodulman, Lawrence; Nomachi, Masaharu; Nomidis, Ioannis; Norberg, Scarlet; Nordberg, Markus; Norton, Peter; Novakova, Jana; Nozaki, Mitsuaki; Nozka, Libor; Nugent, Ian Michael; Nuncio-Quiroz, Adriana-Elizabeth; Nunes Hanninger, Guilherme; Nunnemann, Thomas; Nurse, Emily; O'Brien, Brendan Joseph; O'Neale, Steve; O'Neil, Dugan; O'Shea, Val; Oakes, Louise Beth; Oakham, Gerald; Oberlack, Horst; Ocariz, Jose; Ochi, Atsuhiko; Oda, Susumu; Odaka, Shigeru; Odier, Jerome; Ogren, Harold; Oh, Alexander; Oh, Seog; Ohm, Christian; Ohshima, Takayoshi; Okawa, Hideki; Okumura, Yasuyuki; Okuyama, Toyonobu; Olariu, Albert; Olchevski, Alexander; Olivares Pino, Sebastian Andres; Oliveira, Miguel Alfonso; Oliveira Damazio, Denis; Oliver Garcia, Elena; Olivito, Dominick; Olszewski, Andrzej; Olszowska, Jolanta; Onofre, António; Onyisi, Peter; Oram, Christopher; Oreglia, Mark; Oren, Yona; Orestano, Domizia; Orlando, Nicola; Orlov, Iliya; Oropeza Barrera, Cristina; Orr, Robert; Osculati, Bianca; Ospanov, Rustem; Osuna, Carlos; Otero y Garzon, Gustavo; Ottersbach, John; Ouchrif, Mohamed; Ouellette, Eric; Ould-Saada, Farid; Ouraou, Ahmimed; Ouyang, Qun; Ovcharova, Ana; Owen, Mark; Owen, Simon; Ozcan, Veysi Erkcan; Ozturk, Nurcan; Pacheco Pages, Andres; Padilla Aranda, Cristobal; Pagan Griso, Simone; Paganis, Efstathios; Pahl, Christoph; Paige, Frank; Pais, Preema; Pajchel, Katarina; Palacino, Gabriel; Paleari, Chiara; Palestini, Sandro; Pallin, Dominique; Palma, Alberto; Palmer, Jody; Pan, Yibin; Panagiotopoulou, Evgenia; Pani, Priscilla; Panikashvili, Natalia; Panitkin, Sergey; Pantea, Dan; Papadelis, Aras; Papadopoulou, Theodora; Paramonov, Alexander; Paredes Hernandez, Daniela; Park, Woochun; Parker, Andy; Parodi, Fabrizio; Parsons, John; Parzefall, Ulrich; Pashapour, Shabnaz; Pasqualucci, Enrico; Passaggio, Stefano; Passeri, Antonio; Pastore, Fernanda; Pastore, Francesca; Pásztor, Gabriella; Pataraia, Sophio; Patel, Nikhul; Pater, Joleen; Patricelli, Sergio; Pauly, Thilo; Pecsy, Martin; Pedraza Lopez, Sebastian; Pedraza Morales, Maria Isabel; Peleganchuk, Sergey; Pelikan, Daniel; Peng, Haiping; Penning, Bjoern; Penson, Alexander; Penwell, John; Perantoni, Marcelo; Perez, Kerstin; Perez Cavalcanti, Tiago; Perez Codina, Estel; Pérez García-Estañ, María Teresa; Perez Reale, Valeria; Perini, Laura; Pernegger, Heinz; Perrino, Roberto; Perrodo, Pascal; Peshekhonov, Vladimir; Peters, Krisztian; Petersen, Brian; Petersen, Jorgen; Petersen, Troels; Petit, Elisabeth; Petridis, Andreas; Petridou, Chariclia; Petrolo, Emilio; Petrucci, Fabrizio; Petschull, Dennis; Petteni, Michele; Pezoa, Raquel; Phan, Anna; Phillips, Peter William; Piacquadio, Giacinto; Picazio, Attilio; Piccaro, Elisa; Piccinini, Maurizio; Piec, Sebastian Marcin; Piegaia, Ricardo; Pignotti, David; Pilcher, James; Pilkington, Andrew; Pina, João Antonio; Pinamonti, Michele; Pinder, Alex; Pinfold, James; Pinto, Belmiro; Pizio, Caterina; Plamondon, Mathieu; Pleier, Marc-Andre; Plotnikova, Elena; Poblaguev, Andrei; Poddar, Sahill; Podlyski, Fabrice; Poggioli, Luc; Pohl, Martin; Polesello, Giacomo; Policicchio, Antonio; Polini, Alessandro; Poll, James; Polychronakos, Venetios; Pomeroy, Daniel; Pommès, Kathy; Pontecorvo, Ludovico; Pope, Bernard; Popeneciu, Gabriel Alexandru; Popovic, Dragan; Poppleton, Alan; Portell Bueso, Xavier; Pospelov, Guennady; Pospisil, Stanislav; Potrap, Igor; Potter, Christina; Potter, Christopher; Poulard, Gilbert; Poveda, Joaquin; Pozdnyakov, Valery; Prabhu, Robindra; Pralavorio, Pascal; Pranko, Aliaksandr; Prasad, Srivas; Pravahan, Rishiraj; Prell, Soeren; Pretzl, Klaus Peter; Price, Darren; Price, Joe; Price, Lawrence; Prieur, Damien; Primavera, Margherita; Prokofiev, Kirill; Prokoshin, Fedor; Protopopescu, Serban; Proudfoot, James; Prudent, Xavier; Przybycien, Mariusz; Przysiezniak, Helenka; Psoroulas, Serena; Ptacek, Elizabeth; Pueschel, Elisa; Purdham, John; Purohit, Milind; Puzo, Patrick; Pylypchenko, Yuriy; Qian, Jianming; Quadt, Arnulf; Quarrie, David; Quayle, William; Quinonez, Fernando; Raas, Marcel; Radescu, Voica; Radloff, Peter; Rador, Tonguc; Ragusa, Francesco; Rahal, Ghita; Rahimi, Amir; Rahm, David; Rajagopalan, Srinivasan; Rammensee, Michael; Rammes, Marcus; Randle-Conde, Aidan Sean; Randrianarivony, Koloina; Rauscher, Felix; Rave, Tobias Christian; Raymond, Michel; Read, Alexander Lincoln; Rebuzzi, Daniela; Redelbach, Andreas; Redlinger, George; Reece, Ryan; Reeves, Kendall; Reinherz-Aronis, Erez; Reinsch, Andreas; Reisin, Hernan; Reisinger, Ingo; Rembser, Christoph; Ren, Zhongliang; Renaud, Adrien; Rescigno, Marco; Resconi, Silvia; Resende, Bernardo; Reznicek, Pavel; Rezvani, Reyhaneh; Richter, Robert; Richter-Was, Elzbieta; Ridel, Melissa; Rijpstra, Manouk; Rijssenbeek, Michael; Rimoldi, Adele; Rinaldi, Lorenzo; Rios, Ryan Randy; Riu, Imma; Rivoltella, Giancesare; Rizatdinova, Flera; Rizvi, Eram; Robertson, Steven; Robichaud-Veronneau, Andree; Robinson, Dave; Robinson, James; Robson, Aidan; Rocha de Lima, Jose Guilherme; Roda, Chiara; Roda Dos Santos, Denis; Roe, Adam; Roe, Shaun; Røhne, Ole; Rolli, Simona; Romaniouk, Anatoli; Romano, Marino; Romeo, Gaston; Romero Adam, Elena; Roos, Lydia; Ros, Eduardo; Rosati, Stefano; Rosbach, Kilian; Rose, Anthony; Rose, Matthew; Rosenbaum, Gabriel; Rosenberg, Eli; Rosendahl, Peter Lundgaard; Rosenthal, Oliver; Rosselet, Laurent; Rossetti, Valerio; Rossi, Elvira; Rossi, Leonardo Paolo; Rotaru, Marina; Roth, Itamar; Rothberg, Joseph; Rousseau, David; Royon, Christophe; Rozanov, Alexander; Rozen, Yoram; Ruan, Xifeng; Rubbo, Francesco; Rubinskiy, Igor; Ruckstuhl, Nicole; Rud, Viacheslav; Rudolph, Christian; Rudolph, Gerald; Rühr, Frederik; Ruiz-Martinez, Aranzazu; Rumyantsev, Leonid; Rurikova, Zuzana; Rusakovich, Nikolai; Rutherfoord, John; Ruwiedel, Christoph; Ruzicka, Pavel; Ryabov, Yury; Rybar, Martin; Rybkin, Grigori; Ryder, Nick; Saavedra, Aldo; Sacerdoti, Sabrina; Sadeh, Iftach; Sadrozinski, Hartmut; Sadykov, Renat; Safai Tehrani, Francesco; Sakamoto, Hiroshi; Salamanna, Giuseppe; Salamon, Andrea; Saleem, Muhammad; Salek, David; Salihagic, Denis; Salnikov, Andrei; Salt, José; Salvachua Ferrando, Belén; Salvatore, Daniela; Salvatore, Pasquale Fabrizio; Salvucci, Antonio; Salzburger, Andreas; Sampsonidis, Dimitrios; Samset, Björn Hallvard; Sanchez, Arturo; Sanchez Martinez, Victoria; Sandaker, Heidi; Sander, Heinz Georg; Sanders, Michiel; Sandhoff, Marisa; Sandoval, Tanya; Sandoval, Carlos; Sandstroem, Rikard; Sankey, Dave; Sansoni, Andrea; Santamarina Rios, Cibran; Santoni, Claudio; Santonico, Rinaldo; Santos, Helena; Saraiva, João; Sarangi, Tapas; Sarkisyan-Grinbaum, Edward; Sarri, Francesca; Sartisohn, Georg; Sasaki, Osamu; Sasaki, Yuichi; Sasao, Noboru; Satsounkevitch, Igor; Sauvage, Gilles; Sauvan, Emmanuel; Sauvan, Jean-Baptiste; Savard, Pierre; Savinov, Vladimir; Savu, Dan Octavian; Sawyer, Lee; Saxon, David; Saxon, James; Sbarra, Carla; Sbrizzi, Antonio; Scannicchio, Diana; Scarcella, Mark; Schaarschmidt, Jana; Schacht, Peter; Schaefer, Douglas; Schäfer, Uli; Schaepe, Steffen; Schaetzel, Sebastian; Schaffer, Arthur; Schaile, Dorothee; Schamberger, R. Dean; Schamov, Andrey; Scharf, Veit; Schegelsky, Valery; Scheirich, Daniel; Schernau, Michael; Scherzer, Max; Schiavi, Carlo; Schieck, Jochen; Schioppa, Marco; Schlenker, Stefan; Schmidt, Evelyn; Schmieden, Kristof; Schmitt, Christian; Schmitt, Sebastian; Schmitz, Martin; Schneider, Basil; Schnoor, Ulrike; Schoening, Andre; Schorlemmer, Andre Lukas; Schott, Matthias; Schouten, Doug; Schovancova, Jaroslava; Schram, Malachi; Schroeder, Christian; Schroer, Nicolai; Schultens, Martin Johannes; Schultes, Joachim; Schultz-Coulon, Hans-Christian; Schulz, Holger; Schumacher, Markus; Schumm, Bruce; Schune, Philippe; Schwanenberger, Christian; Schwartzman, Ariel; Schwemling, Philippe; Schwienhorst, Reinhard; Schwierz, Rainer; Schwindling, Jerome; Schwindt, Thomas; Schwoerer, Maud; Sciolla, Gabriella; Scott, Bill; Searcy, Jacob; Sedov, George; Sedykh, Evgeny; Seidel, Sally; Seiden, Abraham; Seifert, Frank; Seixas, José; Sekhniaidze, Givi; Sekula, Stephen; Selbach, Karoline Elfriede; Seliverstov, Dmitry; Sellden, Bjoern; Sellers, Graham; Seman, Michal; Semprini-Cesari, Nicola; Serfon, Cedric; Serin, Laurent; Serkin, Leonid; Seuster, Rolf; Severini, Horst; Sfyrla, Anna; Shabalina, Elizaveta; Shamim, Mansoora; Shan, Lianyou; Shank, James; Shao, Qi Tao; Shapiro, Marjorie; Shatalov, Pavel; Shaw, Kate; Sherman, Daniel; Sherwood, Peter; Shibata, Akira; Shimizu, Shima; Shimojima, Makoto; Shin, Taeksu; Shiyakova, Maria; Shmeleva, Alevtina; Shochet, Mel; Short, Daniel; Shrestha, Suyog; Shulga, Evgeny; Shupe, Michael; Sicho, Petr; Sidoti, Antonio; Siegert, Frank; Sijacki, Djordje; Silbert, Ohad; Silva, José; Silver, Yiftah; Silverstein, Daniel; Silverstein, Samuel; Simak, Vladislav; Simard, Olivier; Simic, Ljiljana; Simion, Stefan; Simioni, Eduard; Simmons, Brinick; Simoniello, Rosa; Simonyan, Margar; Sinervo, Pekka; Sinev, Nikolai; Sipica, Valentin; Siragusa, Giovanni; Sircar, Anirvan; Sisakyan, Alexei; Sivoklokov, Serguei; Sjölin, Jörgen; Sjursen, Therese; Skinnari, Louise Anastasia; Skottowe, Hugh Philip; Skovpen, Kirill; Skubic, Patrick; Slater, Mark; Slavicek, Tomas; Sliwa, Krzysztof; Smakhtin, Vladimir; Smart, Ben; Smirnov, Sergei; Smirnov, Yury; Smirnova, Lidia; Smirnova, Oxana; Smith, Ben Campbell; Smith, Douglas; Smith, Kenway; Smizanska, Maria; Smolek, Karel; Snesarev, Andrei; Snow, Steve; Snow, Joel; Snyder, Scott; Sobie, Randall; Sodomka, Jaromir; Soffer, Abner; Solans, Carlos; Solar, Michael; Solc, Jaroslav; Soldatov, Evgeny; Soldevila, Urmila; Solfaroli Camillocci, Elena; Solodkov, Alexander; Solovyanov, Oleg; Solovyev, Victor; Soni, Nitesh; Sopko, Vit; Sopko, Bruno; Sosebee, Mark; Soualah, Rachik; Soukharev, Andrey; Spagnolo, Stefania; Spanò, Francesco; Spighi, Roberto; Spigo, Giancarlo; Spiwoks, Ralf; Spousta, Martin; Spreitzer, Teresa; Spurlock, Barry; St Denis, Richard Dante; Stahlman, Jonathan; Stamen, Rainer; Stanecka, Ewa; Stanek, Robert; Stanescu, Cristian; Stanescu-Bellu, Madalina; Stapnes, Steinar; Starchenko, Evgeny; Stark, Jan; Staroba, Pavel; Starovoitov, Pavel; Staszewski, Rafal; Staude, Arnold; Stavina, Pavel; Steele, Genevieve; Steinbach, Peter; Steinberg, Peter; Stekl, Ivan; Stelzer, Bernd; Stelzer, Harald Joerg; Stelzer-Chilton, Oliver; Stenzel, Hasko; Stern, Sebastian; Stewart, Graeme; Stillings, Jan Andre; Stockton, Mark; Stoerig, Kathrin; Stoicea, Gabriel; Stonjek, Stefan; Strachota, Pavel; Stradling, Alden; Straessner, Arno; Strandberg, Jonas; Strandberg, Sara; Strandlie, Are; Strang, Michael; Strauss, Emanuel; Strauss, Michael; Strizenec, Pavol; Ströhmer, Raimund; Strom, David; Strong, John; Stroynowski, Ryszard; Strube, Jan; Stugu, Bjarne; Stumer, Iuliu; Stupak, John; Sturm, Philipp; Styles, Nicholas Adam; Soh, Dart-yin; Su, Dong; Subramania, Halasya Siva; Succurro, Antonella; Sugaya, Yorihito; Suhr, Chad; Suk, Michal; Sulin, Vladimir; Sultansoy, Saleh; Sumida, Toshi; Sun, Xiaohu; Sundermann, Jan Erik; Suruliz, Kerim; Susinno, Giancarlo; Sutton, Mark; Suzuki, Yu; Suzuki, Yuta; Svatos, Michal; Swedish, Stephen; Sykora, Ivan; Sykora, Tomas; Sánchez, Javier; Ta, Duc; Tackmann, Kerstin; Taffard, Anyes; Tafirout, Reda; Taiblum, Nimrod; Takahashi, Yuta; Takai, Helio; Takashima, Ryuichi; Takeda, Hiroshi; Takeshita, Tohru; Takubo, Yosuke; Talby, Mossadek; Talyshev, Alexey; Tamsett, Matthew; Tanaka, Junichi; Tanaka, Reisaburo; Tanaka, Satoshi; Tanaka, Shuji; Tanasijczuk, Andres Jorge; Tani, Kazutoshi; Tannoury, Nancy; Tapprogge, Stefan; Tardif, Dominique; Tarem, Shlomit; Tarrade, Fabien; Tartarelli, Giuseppe Francesco; Tas, Petr; Tasevsky, Marek; Tassi, Enrico; Tatarkhanov, Mous; Tayalati, Yahya; Taylor, Christopher; Taylor, Frank; Taylor, Geoffrey; Taylor, Wendy; Teinturier, Marthe; Teixeira Dias Castanheira, Matilde; Teixeira-Dias, Pedro; Temming, Kim Katrin; Ten Kate, Herman; Teng, Ping-Kun; Terada, Susumu; Terashi, Koji; Terron, Juan; Testa, Marianna; Teuscher, Richard; Therhaag, Jan; Theveneaux-Pelzer, Timothée; Thoma, Sascha; Thomas, Juergen; Thompson, Emily; Thompson, Paul; Thompson, Peter; Thompson, Stan; Thomsen, Lotte Ansgaard; Thomson, Evelyn; Thomson, Mark; Thong, Wai Meng; Thun, Rudolf; Tian, Feng; Tibbetts, Mark James; Tic, Tomáš; Tikhomirov, Vladimir; Tikhonov, Yury; Timoshenko, Sergey; Tipton, Paul; Tisserant, Sylvain; Todorov, Theodore; Todorova-Nova, Sharka; Toggerson, Brokk; Tojo, Junji; Tokár, Stanislav; Tokushuku, Katsuo; Tollefson, Kirsten; Tomoto, Makoto; Tompkins, Lauren; Toms, Konstantin; Tonoyan, Arshak; Topfel, Cyril; Topilin, Nikolai; Torchiani, Ingo; Torrence, Eric; Torres, Heberth; Torró Pastor, Emma; Toth, Jozsef; Touchard, Francois; Tovey, Daniel; Trefzger, Thomas; Tremblet, Louis; Tricoli, Alesandro; Trigger, Isabel Marian; Trincaz-Duvoid, Sophie; Tripiana, Martin; Triplett, Nathan; Trischuk, William; Trocmé, Benjamin; Troncon, Clara; Trottier-McDonald, Michel; Trzebinski, Maciej; Trzupek, Adam; Tsarouchas, Charilaos; Tseng, Jeffrey; Tsiakiris, Menelaos; Tsiareshka, Pavel; Tsionou, Dimitra; Tsipolitis, Georgios; Tsiskaridze, Shota; Tsiskaridze, Vakhtang; Tskhadadze, Edisher; Tsukerman, Ilya; Tsulaia, Vakhtang; Tsung, Jieh-Wen; Tsuno, Soshi; Tsybychev, Dmitri; Tua, Alan; Tudorache, Alexandra; Tudorache, Valentina; Tuggle, Joseph; Turala, Michal; Turecek, Daniel; Turk Cakir, Ilkay; Turlay, Emmanuel; Turra, Ruggero; Tuts, Michael; Tykhonov, Andrii; Tylmad, Maja; Tyndel, Mike; Tzanakos, George; Uchida, Kirika; Ueda, Ikuo; Ueno, Ryuichi; Ugland, Maren; Uhlenbrock, Mathias; Uhrmacher, Michael; Ukegawa, Fumihiko; Unal, Guillaume; Undrus, Alexander; Unel, Gokhan; Unno, Yoshinobu; Urbaniec, Dustin; Usai, Giulio; Uslenghi, Massimiliano; Vacavant, Laurent; Vacek, Vaclav; Vachon, Brigitte; Vahsen, Sven; Valenta, Jan; Valentinetti, Sara; Valero, Alberto; Valkar, Stefan; Valladolid Gallego, Eva; Vallecorsa, Sofia; Valls Ferrer, Juan Antonio; Van Der Deijl, Pieter; van der Geer, Rogier; van der Graaf, Harry; Van Der Leeuw, Robin; van der Poel, Egge; van der Ster, Daniel; van Eldik, Niels; van Gemmeren, Peter; van Vulpen, Ivo; Vanadia, Marco; Vandelli, Wainer; Vaniachine, Alexandre; Vankov, Peter; Vannucci, Francois; Vari, Riccardo; Varol, Tulin; Varouchas, Dimitris; Vartapetian, Armen; Varvell, Kevin; Vassilakopoulos, Vassilios; Vazeille, Francois; Vazquez Schroeder, Tamara; Vegni, Guido; Veillet, Jean-Jacques; Veloso, Filipe; Veness, Raymond; Veneziano, Stefano; Ventura, Andrea; Ventura, Daniel; Venturi, Manuela; Venturi, Nicola; Vercesi, Valerio; Verducci, Monica; Verkerke, Wouter; Vermeulen, Jos; Vest, Anja; Vetterli, Michel; Vichou, Irene; Vickey, Trevor; Vickey Boeriu, Oana Elena; Viehhauser, Georg; Viel, Simon; Villa, Mauro; Villaplana Perez, Miguel; Vilucchi, Elisabetta; Vincter, Manuella; Vinek, Elisabeth; Vinogradov, Vladimir; Virchaux, Marc; Virzi, Joseph; Vitells, Ofer; Viti, Michele; Vivarelli, Iacopo; Vives Vaque, Francesc; Vlachos, Sotirios; Vladoiu, Dan; Vlasak, Michal; Vogel, Adrian; Vokac, Petr; Volpi, Guido; Volpi, Matteo; Volpini, Giovanni; von der Schmitt, Hans; von Radziewski, Holger; von Toerne, Eckhard; Vorobel, Vit; Vorwerk, Volker; Vos, Marcel; Voss, Rudiger; Voss, Thorsten Tobias; Vossebeld, Joost; Vranjes, Nenad; Vranjes Milosavljevic, Marija; Vrba, Vaclav; Vreeswijk, Marcel; Vu Anh, Tuan; Vuillermet, Raphael; Vukotic, Ilija; Wagner, Wolfgang; Wagner, Peter; Wahlen, Helmut; Wahrmund, Sebastian; Wakabayashi, Jun; Walch, Shannon; Walder, James; Walker, Rodney; Walkowiak, Wolfgang; Wall, Richard; Waller, Peter; Walsh, Brian; Wang, Chiho; Wang, Haichen; Wang, Hulin; Wang, Jike; Wang, Jin; Wang, Rui; Wang, Song-Ming; Wang, Tan; Warburton, Andreas; Ward, Patricia; Warsinsky, Markus; Washbrook, Andrew; Wasicki, Christoph; Watanabe, Ippei; Watkins, Peter; Watson, Alan; Watson, Ian; Watson, Miriam; Watts, Gordon; Watts, Stephen; Waugh, Anthony; Waugh, Ben; Weber, Michele; Weber, Pavel; Weidberg, Anthony; Weigell, Philipp; Weingarten, Jens; Weiser, Christian; Wellenstein, Hermann; Wells, Phillippa; Wenaus, Torre; Wendland, Dennis; Weng, Zhili; Wengler, Thorsten; Wenig, Siegfried; Wermes, Norbert; Werner, Matthias; Werner, Per; Werth, Michael; Wessels, Martin; Wetter, Jeffrey; Weydert, Carole; Whalen, Kathleen; Wheeler-Ellis, Sarah Jane; White, Andrew; White, Martin; White, Sebastian; Whitehead, Samuel Robert; Whiteson, Daniel; Whittington, Denver; Wicek, Francois; Wicke, Daniel; Wickens, Fred; Wiedenmann, Werner; Wielers, Monika; Wienemann, Peter; Wiglesworth, Craig; Wiik-Fuchs, Liv Antje Mari; Wijeratne, Peter Alexander; Wildauer, Andreas; Wildt, Martin Andre; Wilhelm, Ivan; Wilkens, Henric George; Will, Jonas Zacharias; Williams, Eric; Williams, Hugh; Willis, William; Willocq, Stephane; Wilson, John; Wilson, Michael Galante; Wilson, Alan; Wingerter-Seez, Isabelle; Winkelmann, Stefan; Winklmeier, Frank; Wittgen, Matthias; Wollstadt, Simon Jakob; Wolter, Marcin Wladyslaw; Wolters, Helmut; Wong, Wei-Cheng; Wooden, Gemma; Wosiek, Barbara; Wotschack, Jorg; Woudstra, Martin; Wozniak, Krzysztof; Wraight, Kenneth; Wright, Michael; Wrona, Bozydar; Wu, Sau Lan; Wu, Xin; Wu, Yusheng; Wulf, Evan; Wynne, Benjamin; Xella, Stefania; Xiao, Meng; Xie, Song; Xu, Chao; Xu, Da; Yabsley, Bruce; Yacoob, Sahal; Yamada, Miho; Yamaguchi, Hiroshi; Yamamoto, Akira; Yamamoto, Kyoko; Yamamoto, Shimpei; Yamamura, Taiki; Yamanaka, Takashi; Yamaoka, Jared; Yamazaki, Takayuki; Yamazaki, Yuji; Yan, Zhen; Yang, Haijun; Yang, Un-Ki; Yang, Yi; Yang, Zhaoyu; Yanush, Serguei; Yao, Liwen; Yao, Yushu; Yasu, Yoshiji; Ybeles Smit, Gabriel Valentijn; Ye, Jingbo; Ye, Shuwei; Yilmaz, Metin; Yoosoofmiya, Reza; Yorita, Kohei; Yoshida, Riktura; Young, Charles; Young, Christopher John; Youssef, Saul; Yu, Dantong; Yu, Jaehoon; Yu, Jie; Yuan, Li; Yurkewicz, Adam; Byszewski, Marcin; Zabinski, Bartlomiej; Zaidan, Remi; Zaitsev, Alexander; Zajacova, Zuzana; Zanello, Lucia; Zaytsev, Alexander; Zeitnitz, Christian; Zeman, Martin; Zemla, Andrzej; Zendler, Carolin; Zenin, Oleg; Ženiš, Tibor; Zinonos, Zinonas; Zenz, Seth; Zerwas, Dirk; Zevi della Porta, Giovanni; Zhan, Zhichao; Zhang, Dongliang; Zhang, Huaqiao; Zhang, Jinlong; Zhang, Xueyao; Zhang, Zhiqing; Zhao, Long; Zhao, Tianchi; Zhao, Zhengguo; Zhemchugov, Alexey; Zhong, Jiahang; Zhou, Bing; Zhou, Ning; Zhou, Yue; Zhu, Cheng Guang; Zhu, Hongbo; Zhu, Junjie; Zhu, Yingchun; Zhuang, Xuai; Zhuravlov, Vadym; Zieminska, Daria; Zimin, Nikolai; Zimmermann, Robert; Zimmermann, Simone; Zimmermann, Stephanie; Ziolkowski, Michael; Zitoun, Robert; Živković, Lidija; Zmouchko, Viatcheslav; Zobernig, Georg; Zoccoli, Antonio; zur Nedden, Martin; Zutshi, Vishnu; Zwalinski, Lukasz

2013-03-02

The measurement of the jet energy resolution is presented using data recorded with the ATLAS detector in proton-proton collisions at $\\sqrt{s}$ = 7 TeV. The sample corresponds to an integrated luminosity of 35 pb-1. Jets are reconstructed from energy deposits measured by the calorimeters and calibrated using different jet calibration schemes. The jet energy resolution is measured with two different in situ methods which are found to be in agreement within uncertainties. The total uncertainties on these measurements range from 20% to 10% for jets within |y|<2.8 and with transverse momenta increasing from 30 GeV to 500 GeV. Overall, the Monte Carlo simulation of the jet energy resolution agrees with the data within 10%.

Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology.

Science.gov (United States)

Adler, Daniel H; Wisse, Laura E M; Ittyerah, Ranjit; Pluta, John B; Ding, Song-Lin; Xie, Long; Wang, Jiancong; Kadivar, Salmon; Robinson, John L; Schuck, Theresa; Trojanowski, John Q; Grossman, Murray; Detre, John A; Elliott, Mark A; Toledo, Jon B; Liu, Weixia; Pickup, Stephen; Miller, Michael I; Das, Sandhitsu R; Wolk, David A; Yushkevich, Paul A

2018-04-17

Although the hippocampus is one of the most studied structures in the human brain, limited quantitative data exist on its 3D organization, anatomical variability, and effects of disease on its subregions. Histological studies provide restricted reference information due to their 2D nature. In this paper, high-resolution (∼200 × 200 × 200 μm 3 ) ex vivo MRI scans of 31 human hippocampal specimens are combined using a groupwise diffeomorphic registration approach into a 3D probabilistic atlas that captures average anatomy and anatomic variability of hippocampal subfields. Serial histological imaging in 9 of the 31 specimens was used to label hippocampal subfields in the atlas based on cytoarchitecture. Specimens were obtained from autopsies in patients with a clinical diagnosis of Alzheimer's disease (AD; 9 subjects, 13 hemispheres), of other dementia (nine subjects, nine hemispheres), and in subjects without dementia (seven subjects, nine hemispheres), and morphometric analysis was performed in atlas space to measure effects of age and AD on hippocampal subfields. Disproportional involvement of the cornu ammonis (CA) 1 subfield and stratum radiatum lacunosum moleculare was found in AD, with lesser involvement of the dentate gyrus and CA2/3 subfields. An association with age was found for the dentate gyrus and, to a lesser extent, for CA1. Three-dimensional patterns of variability and disease and aging effects discovered via the ex vivo hippocampus atlas provide information highly relevant to the active field of in vivo hippocampal subfield imaging.

Study of ATLAS TRT performance with GRID and supercomputers.

CERN Document Server

Krasnopevtsev, Dimitriy; The ATLAS collaboration; Mashinistov, Ruslan; Belyaev, Nikita; Ryabinkin, Evgeny

2015-01-01

After the early success in discovering a new particle consistent with the long awaited Higgs boson, Large Hadron Collider experiments are ready for the precision measurements and further discoveries that will be made possible by much higher LHC collision rates from spring 2015. A proper understanding of the detectors performance at high occupancy conditions is important for many on-going physics analyses. The ATLAS Transition Radiation Tracker (TRT) is one of these detectors. TRT is a large straw tube tracking system that is the outermost of the three subsystems of the ATLAS Inner Detector (ID). TRT contributes significantly to the resolution for high-pT tracks in the ID providing excellent particle identification capabilities and electron-pion separation. ATLAS experiment is using Worldwide LHC Computing Grid. WLCG is a global collaboration of computer centers and provides seamless access to computing resources which include data storage capacity, processing power, sensors, visualisation tools and more. WLCG...

Operational Experience with the ATLAS Pixel Detector at LHC

CERN Document Server

Keil, M

2013-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus crucial for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via front-end chips bump-bonded to 1744 n-on-n silicon substrates. In this paper results from the successful operation of the Pixel Detector at the LHC will be presented, including calibration procedures, detector performance and measurements of radiation damage. The detector performance is excellent: more than 95% of the pixels are operational, noise occupancy and hit efficiency exceed the des...

Molecular-level characterization of crude oil compounds combining reversed-phase high-performance liquid chromatography with off-line high-resolution mass spectrometry

Science.gov (United States)

Sim, Arum; Cho, Yunju; Kim, Daae; Witt, Matthias; Birdwell, Justin E.; Kim, Byung Ju; Kim, Sunghwan

2014-01-01

A reversed-phase separation technique was developed in a previous study (Loegel et al., 2012) and successfully applied to the de-asphalted fraction of crude oil. However, to the best of our knowledge, the molecular-level characterization of oil fractions obtained by reversed-phase high-performance liquid chromatography (HPLC) coupled with high-resolution mass spectrometry (MS) has not yet been reported. A detailed characterization of the oil fractions prepared by reversed-phase HPLC was performed in this study. HPLC fractionation was carried out on conventional crude oil and an oil shale pyrolysate. The analyses of the fractions showed that the carbon number of alkyl chains and the double bond equivalent (DBE) value were the major factors determining elution order. The compounds with larger DBE (presumably more condensed aromatic structures) and smaller carbon number (presumably compounds with short side chains) were eluted earlier but those compounds with lower DBE values (presumably less aromatic structures) and higher carbon number (presumably compounds with longer alkyl chains) eluted later in the chromatograms. This separation behavior is in good agreement with that expected from the principles of reversed-phase separation. The data presented in this study show that reversed-phase chromatography is effective in separating crude oil compounds and can be combined with ultrahigh-resolution MS data to better understand natural oils and oil shale pyrolysates.

Atlas – a data warehouse for integrative bioinformatics

Directory of Open Access Journals (Sweden)

Yuen Macaire MS

2005-02-01

Full Text Available Abstract Background We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional annotations of genes, and biological ontologies. The goal of the system is to provide data, as well as a software infrastructure for bioinformatics research and development. Description The Atlas system is based on relational data models that we developed for each of the source data types. Data stored within these relational models are managed through Structured Query Language (SQL calls that are implemented in a set of Application Programming Interfaces (APIs. The APIs include three languages: C++, Java, and Perl. The methods in these API libraries are used to construct a set of loader applications, which parse and load the source datasets into the Atlas database, and a set of toolbox applications which facilitate data retrieval. Atlas stores and integrates local instances of GenBank, RefSeq, UniProt, Human Protein Reference Database (HPRD, Biomolecular Interaction Network Database (BIND, Database of Interacting Proteins (DIP, Molecular Interactions Database (MINT, IntAct, NCBI Taxonomy, Gene Ontology (GO, Online Mendelian Inheritance in Man (OMIM, LocusLink, Entrez Gene and HomoloGene. The retrieval APIs and toolbox applications are critical components that offer end-users flexible, easy, integrated access to this data. We present use cases that use Atlas to integrate these sources for genome annotation, inference of molecular interactions across species, and gene-disease associations. Conclusion The Atlas biological data warehouse serves as data infrastructure for bioinformatics research and development. It forms the backbone of the research activities in our laboratory and facilitates the integration of disparate, heterogeneous biological sources of data enabling new scientific inferences. Atlas achieves integration of diverse data sets at two levels. First

ATLAS. LHC experiments

International Nuclear Information System (INIS)

Anon.

1995-01-01

In Greek mythology, Atlas was a Titan who had to hold up the heavens with his hands as a punishment for having taken part in a revolt against the Olympians. For LHC, the ATLAS detector will also have an onerous physics burden to bear, but this is seen as a golden opportunity rather than a punishment. The major physics goal of CERN's LHC proton-proton collider is the quest for the long-awaited£higgs' mechanism which drives the spontaneous symmetry breaking of the electroweak Standard Model picture. The large ATLAS collaboration proposes a large general-purpose detector to exploit the full discovery potential of LHC's proton collisions. LHC will provide proton-proton collision luminosities at the aweinspiring level of 1034 cm2 s~1, with initial running in at 1033. The ATLAS philosophy is to handle as many signatures as possible at all luminosity levels, with the initial running providing more complex possibilities. The ATLAS concept was first presented as a Letter of Intent to the LHC Committee in November 1992. Following initial presentations at the Evian meeting (Towards the LHC Experimental Programme') in March of that year, two ideas for generalpurpose detectors, the ASCOT and EAGLE schemes, merged, with Friedrich Dydak (MPI Munich) and Peter Jenni (CERN) as ATLAS cospokesmen. Since the initial Letter of Intent presentation, the ATLAS design has been optimized and developed, guided by physics performance studies and the LHC-oriented detector R&D programme (April/May, page 3). The overall detector concept is characterized by an inner superconducting solenoid (for inner tracking) and large superconducting air-core toroids outside the calorimetry. This solution avoids constraining the calorimetry while providing a high resolution, large acceptance and robust detector. The outer magnet will extend over a length of 26 metres, with an outer diameter of almost 20 metres. The total weight of the detector is 7,000 tonnes. Fitted with its end

Feasibility of high-resolution continuum source molecular absorption spectrometry in flame and furnace for sulphur determination in petroleum products

Science.gov (United States)

Kowalewska, Zofia

2011-07-01

For the first time, high-resolution molecular absorption spectrometry with a high-intensity xenon lamp as radiation source has been applied for the determination of sulphur in crude oil and petroleum products. The samples were analysed as xylene solutions using vaporisation in acetylene-air flame or in an electrothermally heated graphite furnace. The sensitive rotational lines of the CS molecule, belonging to the ∆ν = 0 vibrational sequence within the electronic transition X 1∑ + → A 1П, were applied. For graphite furnace molecular absorption spectrometry, the Pd + Mg organic modifier was selected. Strong interactions with Pd atoms enable easier decomposition of sulphur-containing compounds, likely through the temporal formation of Pd xS y molecules. At the 258.056 nm line, with the wavelength range covering central pixel ± 5 pixels and with application of interactive background correction, the detection limit was 14 ng in graphite furnace molecular absorption spectrometry and 18 mg kg -1 in flame molecular absorption spectrometry. Meanwhile, application of 2-points background correction found a characteristic mass of 12 ng in graphite furnace molecular absorption spectrometry and a characteristic concentration of 104 mg kg -1 in flame molecular absorption spectrometry. The range of application of the proposed methods turned out to be significantly limited by the properties of the sulphur compounds of interest. In the case of volatile sulphur compounds, which can be present in light petroleum products, severe difficulties were encountered. On the contrary, heavy oils and residues from distillation as well as crude oil could be analysed using both flame and graphite furnace vaporisation. The good accuracy of the proposed methods for these samples was confirmed by their mutual consistency and the results from analysis of reference samples (certified reference materials and home reference materials with sulphur content determined by X-ray fluorescence

Feasibility of high-resolution continuum source molecular absorption spectrometry in flame and furnace for sulphur determination in petroleum products

Energy Technology Data Exchange (ETDEWEB)

Kowalewska, Zofia, E-mail: zofia.kowalewska@obr.pl

2011-07-15

For the first time, high-resolution molecular absorption spectrometry with a high-intensity xenon lamp as radiation source has been applied for the determination of sulphur in crude oil and petroleum products. The samples were analysed as xylene solutions using vaporisation in acetylene-air flame or in an electrothermally heated graphite furnace. The sensitive rotational lines of the CS molecule, belonging to the {Delta}{nu} = 0 vibrational sequence within the electronic transition X{sup 1}{Sigma}{sup +} {yields} A{sup 1}{Pi}, were applied. For graphite furnace molecular absorption spectrometry, the Pd + Mg organic modifier was selected. Strong interactions with Pd atoms enable easier decomposition of sulphur-containing compounds, likely through the temporal formation of Pd{sub x}S{sub y} molecules. At the 258.056 nm line, with the wavelength range covering central pixel {+-} 5 pixels and with application of interactive background correction, the detection limit was 14 ng in graphite furnace molecular absorption spectrometry and 18 mg kg{sup -1} in flame molecular absorption spectrometry. Meanwhile, application of 2-points background correction found a characteristic mass of 12 ng in graphite furnace molecular absorption spectrometry and a characteristic concentration of 104 mg kg{sup -1} in flame molecular absorption spectrometry. The range of application of the proposed methods turned out to be significantly limited by the properties of the sulphur compounds of interest. In the case of volatile sulphur compounds, which can be present in light petroleum products, severe difficulties were encountered. On the contrary, heavy oils and residues from distillation as well as crude oil could be analysed using both flame and graphite furnace vaporisation. The good accuracy of the proposed methods for these samples was confirmed by their mutual consistency and the results from analysis of reference samples (certified reference materials and home reference materials with

Highly Parallelized Pattern Matching Execution for the ATLAS Experiment

CERN Document Server

Citraro, Saverio; The ATLAS collaboration

2015-01-01

The trigger system of the ATLAS experiment at LHC will extend its rejection capabilities during operations in 2015-2018 by introducing the Fast TracKer system (FTK). FTK is a hardware based system capable of finding charged particle tracks by analyzing hits in silicon detectors at the rate of 105 events per second. The core of track reconstruction is performed into two pipelined steps. At first step the candidate tracks are found by matching combination of low resolution hits to predefined patterns; then they are used in the second step to seed a more precise track fitting algorithm. The key FTK component is an Associative Memory (AM) system that is used to perform pattern matching with high degree of parallelism. The AM system implementation, the AM Serial Link Processor, is based on an extremely powerful network of 2 Gb/s serial links to sustain a huge traffic of data. We report on the design of the Serial Link Processor consisting of two types of boards, the Little Associative Memory Board (LAMB), a mezzan...

Alignment of the ATLAS Inner Detector Tracking System

CERN Document Server

Heller, C; The ATLAS collaboration

2011-01-01

ATLAS is one of the multipurpose experiments that records the products of the LHC proton-proton and heavy ion collisions. In order to reconstruct trajectories of charged particles produced in these collisions, ATLAS is equipped with a tracking system built using two different technologies, silicon planar sensors (pixel and microstrips) and drift-tube based detectors. Together they constitute the ATLAS Inner Detector, which is embedded in a 2 T axial field. Efficiently reconstructing tracks from charged particles traversing the detector, and precisely measure their momenta is of crucial importance for physics analyses. In order to achieve its scientific goals, an alignment of the ATLAS Inner Detector is required to accurately determine its more than 700,000 degrees of freedom. The goal of the alignment is set such that the limited knowledge of the sensor locations should not deteriorate the resolution of track parameters by more than 20% with respect to the intrinsic tracker resolution. The implementation of t...

Immersion Gratings for Infrared High-resolution Spectroscopy

Science.gov (United States)

Sarugaku, Yuki; Ikeda, Yuji; Kobayashi, Naoto; Kaji, Sayumi; Sukegawa, Takashi; Sugiyama, Shigeru; Nakagawa, Takao; Arasaki, Takayuki; Kondo, Sohei; Nakanishi, Kenshi; Yasui, Chikako; Kawakita, Hideyo

2016-10-01

High-resolution spectroscopy in the infrared wavelength range is essential for observations of minor isotopologues, such as HDO for water, and prebiotic organic molecules like hydrocarbons/P-bearing molecules because numerous vibrational molecular bands (including non-polar molecules) are located in this wavelength range. High spectral resolution enables us to detect weak lines without spectral line confusion. This technique has been widely used in planetary sciences, e.g., cometary coma (H2O, CO, and organic molecules), the martian atmosphere (CH4, CO2, H2O and HDO), and the upper atmosphere of gas giants (H3+ and organic molecules such as C2H6). Spectrographs with higher resolution (and higher sensitivity) still have a potential to provide a plenty of findings. However, because the size of spectrographs scales with the spectral resolution, it is difficult to realize it.Immersion grating (IG), which is a diffraction grating wherein the diffraction surface is immersed in a material with a high refractive index (n > 2), provides n times higher spectral resolution compared to a reflective grating of the same size. Because IG reduces the size of spectrograph to 1/n compared to the spectrograph with the same spectral resolution using a conventional reflective grating, it is widely acknowledged as a key optical device to realize compact spectrographs with high spectral resolution.Recently, we succeeded in fabricating a CdZnTe immersion grating with the theoretically predicted diffraction efficiency by machining process using an ultrahigh-precision five-axis processing machine developed by Canon Inc. Using the same technique, we completed a practical germanium (Ge) immersion grating with both a reflection coating on the grating surface and the an AR coating on the entrance surface. It is noteworthy that the wide wavelength range from 2 to 20 um can be covered by the two immersion gratings.In this paper, we present the performances and the applications of the immersion

Online Measurement of LHC Beam Parameters with the ATLAS High Level Trigger

CERN Document Server

Strauss, E; The ATLAS collaboration

2011-01-01

We present an online measurement of the LHC beam parameters in ATLAS using the High Level Trigger (HLT). When a significant change is detected in the measured beamspot, it is distributed to the HLT. There, trigger algorithms like b-tagging which calculate impact parameters or decay lengths benefit from a precise, up-to-date set of beamspot parameters. Additionally, online feedback is sent to the LHC operators in real time. The measurement is performed by an algorithm running on the Level 2 trigger farm, leveraging the high rate of usable events. Dedicated algorithms perform a full scan of the silicon detector to reconstruct event vertices from registered tracks. The distribution of these vertices is aggregated across the farm and their shape is extracted through fits every 60 seconds to determine the beamspot position, size, and tilt. The reconstructed beam values are corrected for detector resolution effects, measured in situ using the separation of vertices whose tracks have been split into two collections....

Online measurement of LHC beam parameters with the ATLAS High Level Trigger

CERN Document Server

Strauss, E; The ATLAS collaboration

2011-01-01

We present an online measurement of the LHC beam parameters in ATLAS using the High Level Trigger (HLT). When a significant change is detected in the measured beamspot, it is distributed to the HLT. There, trigger algorithms like b-tagging which calculate impact parameters or decay lengths benefit from a precise,up-to-date set of beamspot parameters. Additionally, online feedback is sent to the LHC operators in real time. The measurement is performed by an algorithm running on the Level 2 trigger farm, leveraging the high rate of usable events. Dedicated algorithms perform a full scan of the silicon detector to reconstruct event vertices from registered tracks. The distribution of these vertices is aggregated across the farm and their shape is extracted through fits every 60 seconds to determine the beamspot position, size, and tilt. The reconstructed beam values are corrected for detector resolution effects, measured in situ using the separation of vertices whose tracks have been split into two collections. ...

Australasian Gastrointestinal Trials Group (AGITG) Contouring Atlas and Planning Guidelines for Intensity-Modulated Radiotherapy in Anal Cancer

International Nuclear Information System (INIS)

Ng, Michael; Leong, Trevor; Chander, Sarat; Chu, Julie; Kneebone, Andrew; Carroll, Susan; Wiltshire, Kirsty; Ngan, Samuel; Kachnic, Lisa

2012-01-01

Purpose: To develop a high-resolution target volume atlas with intensity-modulated radiotherapy (IMRT) planning guidelines for the conformal treatment of anal cancer. Methods and Materials: A draft contouring atlas and planning guidelines for anal cancer IMRT were prepared at the Australasian Gastrointestinal Trials Group (AGITG) annual meeting in September 2010. An expert panel of radiation oncologists contoured an anal cancer case to generate discussion on recommendations regarding target definition for gross disease, elective nodal volumes, and organs at risk (OARs). Clinical target volume (CTV) and planning target volume (PTV) margins, dose fractionation, and other IMRT-specific issues were also addressed. A steering committee produced the final consensus guidelines. Results: Detailed contouring and planning guidelines and a high-resolution atlas are provided. Gross tumor and elective target volumes are described and pictorially depicted. All elective regions should be routinely contoured for all disease stages, with the possible exception of the inguinal and high pelvic nodes for select, early-stage T1N0. A 20-mm CTV margin for the primary, 10- to 20-mm CTV margin for involved nodes and a 7-mm CTV margin for the elective pelvic nodal groups are recommended, while respecting anatomical boundaries. A 5- to 10-mm PTV margin is suggested. When using a simultaneous integrated boost technique, a dose of 54 Gy in 30 fractions to gross disease and 45 Gy to elective nodes with chemotherapy is appropriate. Guidelines are provided for OAR delineation. Conclusion: These consensus planning guidelines and high-resolution atlas complement the existing Radiation Therapy Oncology Group (RTOG) elective nodal ano-rectal atlas and provide additional anatomic, clinical, and technical instructions to guide radiation oncologists in the planning and delivery of IMRT for anal cancer.

Laser-induced blurring of molecular structure information in high harmonic spectroscopy

DEFF Research Database (Denmark)

Risoud, Francois; Leveque, Camille; Labeye, Marie

2017-01-01

High harmonic spectroscopy gives access to molecular structure with Angstrom resolution. Such information is encoded in the destructive interferences occurring between the harmonic emissions from the different parts of the molecule. By solving the time-dependent Schrodinger equation, either....... These findings have important consequences for molecular imaging and orbital tomography using high harmonic spectroscopy....

Supervision of the ATLAS High Level Trigger System

CERN Document Server

Wheeler, S.; Meessen, C.; Qian, Z.; Touchard, F.; Negri, France A.; Zobernig, H.; CHEP 2003 Computing in High Energy Physics; Negri, France A.

2003-01-01

The ATLAS High Level Trigger (HLT) system provides software-based event selection after the initial LVL1 hardware trigger. It is composed of two stages, the LVL2 trigger and the Event Filter. The HLT is implemented as software tasks running on large processor farms. An essential part of the HLT is the supervision system, which is responsible for configuring, coordinating, controlling and monitoring the many hundreds of processes running in the HLT. A prototype implementation of the supervision system, using tools from the ATLAS Online Software system is presented. Results from scalability tests are also presented where the supervision system was shown to be capable of controlling over 1000 HLT processes running on 230 nodes.

Improving jet substructure in ATLAS using unified track and calorimeter information

CERN Document Server

Schramm, Steven; The ATLAS collaboration

2017-01-01

Jet substructure techniques play a critical role in ATLAS in searches for new physics, are increasingly important in measurements of the Standard Model, and are being utilized in the trigger. To date, ATLAS has mostly focused on the use of calorimeter-based jet substructure, which works well for jets initiated by particles with low to moderate boost, but which lacks the angular resolution needed to resolve the desired substructure in the highly-boosted regime. We will present a novel approach designed to mitigate the calorimeter angular resolution limitations, thus providing superior performance to prior methods. Similar to previous methods, the superior angular resolution of the tracker is combined with information from the calorimeters. However, the new method is fundamentally different, as it correlates low-level objects as tracks and individual energy deposits in the calorimeter, before running any jet finding algorithms. The resulting objects are used as inputs to jet reconstruction, and in turn result i...

Resolution and Efficiency of Monitored Drift-Tube Chambers with Final Read-out Electronics at High Background Rates

CERN Document Server

Dubbert, J; Kortner, O; Kroha, H; Manz, A; Mohrdieck-Möck, S; Rauscher, F; Richter, R; Staude, A; Stiller, W

2003-01-01

The performance of a monitored drift-tube chamber for ATLAS with the final read-out electronics was tested at the Gamma Irradiation facility at CERN under varyin photon irradiation rates of up to 990~Hz\\,cm$^{-2}$ which corresponds to 10 times the highest background rate expected in ATLAS. The signal pulse-height measurement of the final read-out electronics was used to perform time-slewing corrections. The corrections improve the average single-tube resolution from 106~$\\mu$m to 89~$\\mu$m at the nominal discriminator threshold of 44~mV without irradiation, and from 114~$\\mu$m to 89~$\\mu$m at the maximum nominal irradiation rate in ATLAS of 100~Hz\\,cm$^{-2}$. The reduction of the threshold from 44~mV to 34~mV and the time-slewing corrections lead to an average single-tube resolution of 82~$\\mu$m without photon background and of 89~$\\mu$m at 100~Hz\\,cm$^{-2}$. The measured muon detection efficiency agrees with the expectation for the final read-out electronics.

Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases.

Science.gov (United States)

Zaslavsky, Ilya; Baldock, Richard A; Boline, Jyl

2014-01-01

Biomedical research entails capture and analysis of massive data volumes and new discoveries arise from data-integration and mining. This is only possible if data can be mapped onto a common framework such as the genome for genomic data. In neuroscience, the framework is intrinsically spatial and based on a number of paper atlases. This cannot meet today's data-intensive analysis and integration challenges. A scalable and extensible software infrastructure that is standards based but open for novel data and resources, is required for integrating information such as signal distributions, gene-expression, neuronal connectivity, electrophysiology, anatomy, and developmental processes. Therefore, the International Neuroinformatics Coordinating Facility (INCF) initiated the development of a spatial framework for neuroscience data integration with an associated Digital Atlasing Infrastructure (DAI). A prototype implementation of this infrastructure for the rodent brain is reported here. The infrastructure is based on a collection of reference spaces to which data is mapped at the required resolution, such as the Waxholm Space (WHS), a 3D reconstruction of the brain generated using high-resolution, multi-channel microMRI. The core standards of the digital atlasing service-oriented infrastructure include Waxholm Markup Language (WaxML): XML schema expressing a uniform information model for key elements such as coordinate systems, transformations, points of interest (POI)s, labels, and annotations; and Atlas Web Services: interfaces for querying and updating atlas data. The services return WaxML-encoded documents with information about capabilities, spatial reference systems (SRSs) and structures, and execute coordinate transformations and POI-based requests. Key elements of INCF-DAI cyberinfrastructure have been prototyped for both mouse and rat brain atlas sources, including the Allen Mouse Brain Atlas, UCSD Cell-Centered Database, and Edinburgh Mouse Atlas Project.

Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases

Directory of Open Access Journals (Sweden)

Ilya eZaslavsky

2014-09-01

Full Text Available Biomedical research entails capture and analysis of massive data volumes and new discoveries arise from data-integration and mining. This is only possible if data can be mapped onto a common framework such as the genome for genomic data. In neuroscience, the framework is intrinsically spatial and based on a number of paper atlases. This cannot meet today’s data-intensive analysis and integration challenges. A scalable and extensible software infrastructure that is standards based but open for novel data and resources, is required for integrating information such as signal distributions, gene-expression, neuronal connectivity, electrophysiology, anatomy, and developmental processes. Therefore, the International Neuroinformatics Coordinating Facility (INCF initiated the development of a spatial framework for neuroscience data integration with an associated Digital Atlasing Infrastructure (DAI. A prototype implementation of this infrastructure for the rodent brain is reported here. The infrastructure is based on a collection of reference spaces to which data is mapped at the required resolution, such as the Waxholm Space (WHS, a 3D reconstruction of the brain generated using high-resolution, multi-channel microMRI. The core standards of the digital atlasing service-oriented infrastructure include Waxholm Markup Language (WaxML: XML schema expressing a uniform information model for key elements such as coordinate systems, transformations, points of interest (POIs, labels, and annotations; and Atlas Web Services: interfaces for querying and updating atlas data. The services return WaxML-encoded documents with information about capabilities, spatial reference systems and structures, and execute coordinate transformations and POI-based requests. Key elements of INCF-DAI cyberinfrastructure have been prototyped for both mouse and rat brain atlas sources, including the Allen Mouse Brain Atlas, UCSD Cell-Centered Database, and Edinburgh Mouse Atlas

High-resolution emission tomography of small laboratory animals: physics and gamma-astronomy meet molecular biology

International Nuclear Information System (INIS)

Beekman, F.J.; Colijn, A.P.; Vastenhouw, B.; Wiegant, V.M.; Gerrits, M.A.F.M.

2003-01-01

Molecular imaging can be defined as the characterization and measurement of biological processes in living animals, model systems and humans at the cellular and molecular level using remote imaging detectors. An example concerns the mapping of the distributions of radioactively labeled molecules in laboratory animals which is of crucial importance for life sciences. Tomographic methods like Single Photon Emission Computed Tomography (SPECT) offer a possibility to visualize distributions of radioactively labeled molecules in living animals. Miniature tomography systems, derived from their clinical counterparts, but with a much higher image resolution are under development in several institutes. An example is U-SPECT that will be discussed in the present paper. Such systems are expected to accelerate several biomedical research procedures, the understanding of gene and protein function, as well as pharmaceutical development

Status of HVCMOS Developments for ATLAS

CERN Document Server

Peric, Ivan; Casanova Mohr, Raimon; Ehrler, Felix; Guezzi Messaoud, Fadoua; Kramer, Christian; Leys, Richard; Prathapan, Mridula; Schimassek, Rudolf; Schoning, Andre; Vilella Figueras, Eva; Weber, Alena; Zhang, Hui

2017-01-01

This paper describes the status of the developments made by ATLAS HVCMOS and HVMAPS collaborations. We have proposed two HVCMOS sensor concepts for ATLAS pixels—the capacitive coupled pixel detector (CCPD) and the monolithic detector. The sensors have been implemented in three semiconductor processes AMS H18, AMS H35 and LFoundry LFA15. Efficiency of 99.7% after neutron irradiation to 1015 neq/cm2W has been measured with the small area CCPD prototype in AMS H18 technology. About 84% of the particles are detected with a time resolution better than 25 ns. The sensor was implemented on a low resistivity substrate. The large area demonstrator sensor in AMS H35 process has been designed, produced and successfully tested. The sensor has been produced on different high resistivity substrates ranging from 80 Ωcm to more than 1 kΩ. Monolithic- and hybrid readout are both possible. In August 2016, six different monolithic pixel matrices for ATLAS with a total area of 1 cm2 have been submitted in LFoundry LFA15 proc...

An anatomic transcriptional atlas of human glioblastoma.

Science.gov (United States)

Puchalski, Ralph B; Shah, Nameeta; Miller, Jeremy; Dalley, Rachel; Nomura, Steve R; Yoon, Jae-Guen; Smith, Kimberly A; Lankerovich, Michael; Bertagnolli, Darren; Bickley, Kris; Boe, Andrew F; Brouner, Krissy; Butler, Stephanie; Caldejon, Shiella; Chapin, Mike; Datta, Suvro; Dee, Nick; Desta, Tsega; Dolbeare, Tim; Dotson, Nadezhda; Ebbert, Amanda; Feng, David; Feng, Xu; Fisher, Michael; Gee, Garrett; Goldy, Jeff; Gourley, Lindsey; Gregor, Benjamin W; Gu, Guangyu; Hejazinia, Nika; Hohmann, John; Hothi, Parvinder; Howard, Robert; Joines, Kevin; Kriedberg, Ali; Kuan, Leonard; Lau, Chris; Lee, Felix; Lee, Hwahyung; Lemon, Tracy; Long, Fuhui; Mastan, Naveed; Mott, Erika; Murthy, Chantal; Ngo, Kiet; Olson, Eric; Reding, Melissa; Riley, Zack; Rosen, David; Sandman, David; Shapovalova, Nadiya; Slaughterbeck, Clifford R; Sodt, Andrew; Stockdale, Graham; Szafer, Aaron; Wakeman, Wayne; Wohnoutka, Paul E; White, Steven J; Marsh, Don; Rostomily, Robert C; Ng, Lydia; Dang, Chinh; Jones, Allan; Keogh, Bart; Gittleman, Haley R; Barnholtz-Sloan, Jill S; Cimino, Patrick J; Uppin, Megha S; Keene, C Dirk; Farrokhi, Farrokh R; Lathia, Justin D; Berens, Michael E; Iavarone, Antonio; Bernard, Amy; Lein, Ed; Phillips, John W; Rostad, Steven W; Cobbs, Charles; Hawrylycz, Michael J; Foltz, Greg D

2018-05-11

Glioblastoma is an aggressive brain tumor that carries a poor prognosis. The tumor's molecular and cellular landscapes are complex, and their relationships to histologic features routinely used for diagnosis are unclear. We present the Ivy Glioblastoma Atlas, an anatomically based transcriptional atlas of human glioblastoma that aligns individual histologic features with genomic alterations and gene expression patterns, thus assigning molecular information to the most important morphologic hallmarks of the tumor. The atlas and its clinical and genomic database are freely accessible online data resources that will serve as a valuable platform for future investigations of glioblastoma pathogenesis, diagnosis, and treatment. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Correlation and agreement between eplet mismatches calculated using serological, low-intermediate and high resolution molecular human leukocyte antigen typing methods.

Science.gov (United States)

Fidler, Samantha; D'Orsogna, Lloyd; Irish, Ashley B; Lewis, Joshua R; Wong, Germaine; Lim, Wai H

2018-03-02

Structural human leukocyte antigen (HLA) matching at the eplet level can be identified by HLAMatchmaker, which requires the entry of four-digit alleles. The aim of this study was to evaluate the agreement between eplet mismatches calculated by serological and two-digit typing methods compared to high-resolution four-digit typing. In a cohort of 264 donor/recipient pairs, the evaluation of measurement error was assessed using intra-class correlation to confirm the absolute agreement between the number of eplet mismatches at class I (HLA-A, -B, C) and II loci (HLA-DQ and -DR) calculated using serological or two-digit molecular typing compared to four-digit molecular typing methods. The proportion of donor/recipient pairs with a difference of >5 eplet mismatches between the HLA typing methods was also determined. Intra-class correlation coefficients between serological and four-digit molecular typing methods were 0.969 (95% confidence intervals [95% CI] 0.960-0.975) and 0.926 (95% CI 0.899-0.944), respectively; and 0.995 (95% CI 0.994-0.996) and 0.993 (95% CI 0.991-0.995), respectively between two-digit and four-digit molecular typing methods. The proportion of donor/recipient pairs with a difference of >5 eplet mismatches at class I and II loci was 4% and 16% for serological versus four-digit molecular typing methods, and 0% and 2% for two-digit versus four-digit molecular typing methods, respectively. In this small predominantly Caucasian population, compared with serology, there is a high level of agreement in the number of eplet mismatches calculated using two-compared to four-digit molecular HLA-typing methods, suggesting that two-digit typing may be sufficient in determining eplet mismatch load in kidney transplantation.

Quantification of the fluorine containing drug 5-fluorouracil in cancer cells by GaF molecular absorption via high-resolution continuum source molecular absorption spectrometry

International Nuclear Information System (INIS)

Krüger, Magnus; Huang, Mao-Dong; Becker-Roß, Helmut; Florek, Stefan; Ott, Ingo; Gust, Ronald

2012-01-01

The development of high-resolution continuum source molecular absorption spectrometry made the quantification of fluorine feasible by measuring the molecular absorption as gallium monofluoride (GaF). Using this new technique, we developed on the example of 5-fluorouracil (5-FU) a graphite furnace method to quantify fluorine in organic molecules. The effect of 5-FU on the generation of the diatomic GaF molecule was investigated. The experimental conditions such as gallium nitrate amount, temperature program, interfering anions (represented as corresponding acids) and calibration for the determination of 5-FU in standard solution and in cellular matrix samples were investigated and optimized. The sample matrix showed no effect on the sensitivity of GaF molecular absorption. A simple calibration curve using an inorganic sodium fluoride solution can conveniently be used for the calibration. The described method is sensitive and the achievable limit of detection is 0.23 ng of 5-FU. In order to establish the concept of “fluorine as a probe in medicinal chemistry” an exemplary application was selected, in which the developed method was successfully demonstrated by performing cellular uptake studies of the 5-FU in human colon carcinoma cells. - Highlights: ► Development of HR-CS MAS for quantification of fluorine bound to organic molecules ► Measuring as molecular absorption of gallium monofluoride ► Quantification of organic-bound fluorine in biological material ► The concept of “fluorine as a probe in medicinal chemistry” could be established

The ATLAS high level trigger region of interest builder

International Nuclear Information System (INIS)

Blair, R.; Dawson, J.; Drake, G.; Haberichter, W.; Schlereth, J.; Zhang, J.; Ermoline, Y.; Pope, B.; Aboline, M.; High Energy Physics; Michigan State Univ.

2008-01-01

This article describes the design, testing and production of the ATLAS Region of Interest Builder (RoIB). This device acts as an interface between the Level 1 trigger and the high level trigger (HLT) farm for the ATLAS LHC detector. It distributes all of the Level 1 data for a subset of events to a small number of (16 or less) individual commodity processors. These processors in turn provide this information to the HLT. This allows the HLT to use the Level 1 information to narrow data requests to areas of the detector where Level 1 has identified interesting objects

EnviroAtlas Tree Cover Configuration and Connectivity, Water Background Web Service

Data.gov (United States)

U.S. Environmental Protection Agency — This EnviroAtlas web service supports research and online mapping activities related to EnviroAtlas (https://www.epa.gov/enviroatlas). The 1-meter resolution tree...

Physics Division annual review, April 1, 1990--March 31, 1991

International Nuclear Information System (INIS)

1991-06-01

This report discusses: Research At Atlas; Operation and Development of Atlas; Medium-Energy Nuclear Physics and Weak Interactions; Theoretical Nuclear Physics; High-Resolution Laser-rf Spectroscopy with Beams of Atoms and Molecules; Fast Ion-Beam/Laser Studies of Atomic and Molecular Structure; Interactions of Fast Atomic and Molecular Ions with Solid and Gaseous Targets; Theoretical Atomic Physics; Atomic Physics at Atlas and the ECR Source; Atomic Physics at Synchrotron Light Sources; and Accelerator Facilities for Atomic Physics

EnviroAtlas - Percent Stream Buffer Zone As Natural Land Cover for the Conterminous United States

Data.gov (United States)

U.S. Environmental Protection Agency — This EnviroAtlas dataset shows the percentage of land area within a 30 meter buffer zone along the National Hydrography Dataset (NHD) high resolution stream network,...

High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania.

Directory of Open Access Journals (Sweden)

Marco Salemi

2008-01-01

Full Text Available HIV-1 epidemic in Western Europe is largely due to subtype B. Little is known about the HIV-1 in Eastern Europe, but a few studies have shown that non-B subtypes are quite common. In Albania, where a recent study estimated a ten-fold increase of AIDS incidence during the last six years, subtype A and B account for 90% of the know infections.We investigated the demographic history of HIV-1 subtype A and B in Albania by using a statistical framework based on coalescent theory and phylogeography. High-resolution phylogenetic and molecular clock analysis showed a limited introduction to the Balkan country of subtype A during the late 1980s followed by an epidemic outburst in the early 1990 s. In contrast, subtype B was apparently introduced multiple times between the mid-1970s and mid-1980s. Both subtypes are growing exponentially, although the HIV-1A epidemic displays a faster growth rate, and a significantly higher basic reproductive number R(0. HIV-1A gene flow occurs primarily from the capital Tirane, in the center of the country, to the periphery, while HIV-1B flow is characterized by a balanced exchange between center and periphery. Finally, we calculated that the actual number of infections in Albania is at least two orders of magnitude higher than previously thought.Our analysis demonstrates the power of recently developed computational tools to investigate molecular epidemiology of pathogens, and emphasize the complex factors involved in the establishment of HIV-1 epidemics. We suggest that a significant correlation exists between HIV-1 exponential spread and the socio-political changes occurred during the Balkan wars. The fast growth of a relatively new non-B epidemic in the Balkans may have significant consequences for the evolution of HIV-1 epidemiology in neighboring countries in Eastern and Western Europe.

The ATLAS Pixel Detector operation and performance

CERN Document Server

Andreazza, A; The ATLAS collaboration

2010-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN. It consists of 1744 silicon sensors equipped with approximately $80 imes 10^6$~electronic channels, providing typically three measurement points with high resolution for particles emerging from the beam-interaction region. The complete Pixel Detector has been taking part in cosmic-ray data-taking since 2008. Since November 2009 it has been operated with LHC colliding beams at $sqrt{s}=900$~GeV, 2.36~TeV and 7 TeV. The detector operated with an active fraction of 97.2% at a threshold of 3500~$e$, showing a noise occupancy rate better than $10^{-9}$~hit/pixel/BC and a track association efficiency of 99%. The Lorentz angle for electrons in silicon is measured to be $ heta_mathrm{L}=12.11^circ pm 0.09^circ$ and its temperature dependence has been verified. The pulse height information from the time-over-threshold technique allows to improve the point resolution using charge sharing and to perform parti...

High-resolution X-ray television and high-resolution video recorders

International Nuclear Information System (INIS)

Haendle, J.; Horbaschek, H.; Alexandrescu, M.

1977-01-01

The improved transmission properties of the high-resolution X-ray television chain described here make it possible to transmit more information per television image. The resolution in the fluoroscopic image, which is visually determined, depends on the dose rate and the inertia of the television pick-up tube. This connection is discussed. In the last few years, video recorders have been increasingly used in X-ray diagnostics. The video recorder is a further quality-limiting element in X-ray television. The development of function patterns of high-resolution magnetic video recorders shows that this quality drop may be largely overcome. The influence of electrical band width and number of lines on the resolution in the X-ray television image stored is explained in more detail. (orig.) [de

Operational Experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Keil, M; The ATLAS collaboration

2012-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC and its status after three years of operation will be presented, including calibration procedures, timing optimization and detector performance. The detector performance is excellent: ~96 % of the pixels are operational, noise occupancy and hit efficiency e...

Operational Experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Keil, M; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Hirschbuehl, D; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this paper results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 96.7% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Lapoire, C; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational Experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Lapoire, C; The ATLAS collaboration

2012-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as B-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this paper, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures and detector performance. The detector performance is excellent: 96.2% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification.

Operational Experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Keil, M

2012-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this paper results from the successful operation of the Pixel Detector at the LHC will be presented, including calibration procedures, timing optimization and detector performance. The detector performance is excellent: approximately 97% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Ince, T; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 96.8% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

Operational experience with the ATLAS Pixel detector at the LHC

CERN Document Server

Deluca, C; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this paper, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5\\% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, ...

Operational Experience with the ATLAS Pixel Detector at the LHC

CERN Document Server

Lange, C; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump- bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, a...

Operational experience with the ATLAS Pixel detector at the LHC

CERN Document Server

Deluca, C; The ATLAS collaboration

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: 97,5% of the pixels are operational, noise occupancy and hit efficiency exceed the design specification, an...

The ATLAS fast tracker processor design

CERN Document Server

Volpi, Guido; Albicocco, Pietro; Alison, John; Ancu, Lucian Stefan; Anderson, James; Andari, Nansi; Andreani, Alessandro; Andreazza, Attilio; Annovi, Alberto; Antonelli, Mario; Asbah, Needa; Atkinson, Markus; Baines, J; Barberio, Elisabetta; Beccherle, Roberto; Beretta, Matteo; Biesuz, Nicolo Vladi; Blair, R E; Bogdan, Mircea; Boveia, Antonio; Britzger, Daniel; Bryant, Partick; Burghgrave, Blake; Calderini, Giovanni; Camplani, Alessandra; Cavaliere, Viviana; Cavasinni, Vincenzo; Chakraborty, Dhiman; Chang, Philip; Cheng, Yangyang; Citraro, Saverio; Citterio, Mauro; Crescioli, Francesco; Dawe, Noel; Dell'Orso, Mauro; Donati, Simone; Dondero, Paolo; Drake, G; Gadomski, Szymon; Gatta, Mauro; Gentsos, Christos; Giannetti, Paola; Gkaitatzis, Stamatios; Gramling, Johanna; Howarth, James William; Iizawa, Tomoya; Ilic, Nikolina; Jiang, Zihao; Kaji, Toshiaki; Kasten, Michael; Kawaguchi, Yoshimasa; Kim, Young Kee; Kimura, Naoki; Klimkovich, Tatsiana; Kolb, Mathis; Kordas, K; Krizka, Karol; Kubota, T; Lanza, Agostino; Li, Ho Ling; Liberali, Valentino; Lisovyi, Mykhailo; Liu, Lulu; Love, Jeremy; Luciano, Pierluigi; Luongo, Carmela; Magalotti, Daniel; Maznas, Ioannis; Meroni, Chiara; Mitani, Takashi; Nasimi, Hikmat; Negri, Andrea; Neroutsos, Panos; Neubauer, Mark; Nikolaidis, Spiridon; Okumura, Y; Pandini, Carlo; Petridou, Chariclia; Piendibene, Marco; Proudfoot, James; Rados, Petar Kevin; Roda, Chiara; Rossi, Enrico; Sakurai, Yuki; Sampsonidis, Dimitrios; Saxon, James; Schmitt, Stefan; Schoening, Andre; Shochet, Mel; Shoijaii, Jafar; Soltveit, Hans Kristian; Sotiropoulou, Calliope-Louisa; Stabile, Alberto; Swiatlowski, Maximilian J; Tang, Fukun; Taylor, Pierre Thor Elliot; Testa, Marianna; Tompkins, Lauren; Vercesi, V; Wang, Rui; Watari, Ryutaro; Zhang, Jianhong; Zeng, Jian Cong; Zou, Rui; Bertolucci, Federico

2015-01-01

The extended use of tracking information at the trigger level in the LHC is crucial for the trigger and data acquisition (TDAQ) system to fulfill its task. Precise and fast tracking is important to identify specific decay products of the Higgs boson or new phenomena, as well as to distinguish the contributions coming from the many collisions that occur at every bunch crossing. However, track reconstruction is among the most demanding tasks performed by the TDAQ computing farm; in fact, complete reconstruction at full Level-1 trigger accept rate (100 kHz) is not possible. In order to overcome this limitation, the ATLAS experiment is planning the installation of a dedicated processor, the Fast Tracker (FTK), which is aimed at achieving this goal. The FTK is a pipeline of high performance electronics, based on custom and commercial devices, which is expected to reconstruct, with high resolution, the trajectories of charged-particle tracks with a transverse momentum above 1 GeV, using the ATLAS inner tracker info...

The ATLAS High Level Trigger Steering Framework and the Trigger 
Configuration System.

CERN Document Server

Pérez Cavalcanti, Tiago; The ATLAS collaboration

2011-01-01

The ATLAS High Level Trigger Steering Framework and the Trigger 
Configuration System.
 
The ATLAS detector system installed in the Large Hadron Collider (LHC) 
at CERN is designed to study proton-proton and nucleus-nucleus 
collisions with a maximum center of mass energy of 14 TeV at a bunch 
collision rate of 40MHz.  In March 2010 the four LHC experiments saw 
the first proton-proton collisions at 7 TeV. Still within the year a 
collision rate of nearly 10 MHz is expected. At ATLAS, events of 
potential interest for ATLAS physics are selected by a three-level 
trigger system, with a final recording rate of about 200 Hz. The first 
level (L1) is implemented in custom hardware; the two levels of 
the high level trigger (HLT) are software triggers, running on large 
farms of standard computers and network devices. 

Within the ATLAS physics program more than 500 trigger signatures are 
defined. The HLT tests each signature on each L1-accepted event; the 
test outcome is recor...

Finessing atlas data for species distribution models

NARCIS (Netherlands)

Niamir, A.; Skidmore, A.K.; Toxopeus, A.G.; Munoz, A.R.; Real, R.

2011-01-01

Aim The spatial resolution of species atlases and therefore resulting model predictions are often too coarse for local applications. Collecting distribution data at a finer resolution for large numbers of species requires a comprehensive sampling effort, making it impractical and expensive. This

High resolution spectroscopy of 1,2-difluoroethane in a molecular beam: A case study of vibrational mode-coupling

Science.gov (United States)

Mork, Steven W.; Miller, C. Cameron; Philips, Laura A.

1992-09-01

The high resolution infrared spectrum of 1,2-difluoroethane (DFE) in a molecular beam has been obtained over the 2978-2996 cm-1 spectral region. This region corresponds to the symmetric combination of asymmetric C-H stretches in DFE. Observed rotational fine structure indicates that this C-H stretch is undergoing vibrational mode coupling to a single dark mode. The dark mode is split by approximately 19 cm-1 due to tunneling between the two identical gauche conformers. The mechanism of the coupling is largely anharmonic with a minor component of B/C plane Coriolis coupling. Effects of centrifugal distortion along the molecular A-axis are also observed. Analysis of the fine structure identifies the dark state as being composed of C-C torsion, CCF bend, and CH2 rock. Coupling between the C-H stretches and the C-C torsion is of particular interest because DFE has been observed to undergo vibrationally induced isomerization from the gauche to trans conformer upon excitation of the C-H stretch.

Diagnostic Systems and Resources utilization of the ATLAS High Level Trigger

CERN Document Server

Sidoti, A; The ATLAS collaboration; Ospanov, R

2010-01-01

Since the LHC started colliding protons in December 2009, the ATLAS trigger has operated very successfully with a collision rate which has increased by several orders of magnitude. The trigger monitoring and data quality infrastructure was essential to this success. We describe the software tools used to monitor the trigger system performance and assess the overall quality of the trigger selection during collisions running. ATLAS has broad physics goals which require a large number of different active triggers due to complex event topology, requiring quite sophisticated software structures and concepts. The trigger of the ATLAS experiment is built as a three level system. The first level is realized in hardware while the high level triggers (HLT) are software based and run on large PC farms. The trigger reduces the bunch crossing rate of 40 MHz, at design, to an average event rate of about 200 Hz for storage. Since the ATLAS detector is a general purpose detector, the trigger must be sensitive to a large numb...

Principles of high resolution NMR in solids

CERN Document Server

Mehring, Michael

1983-01-01

The field of Nuclear Magnetic Resonance (NMR) has developed at a fascinating pace during the last decade. It always has been an extremely valuable tool to the organic chemist by supplying molecular "finger print" spectra at the atomic level. Unfortunately the high resolution achievable in liquid solutions could not be obtained in solids and physicists and physical chemists had to live with unresolved lines open to a wealth of curve fitting procedures and a vast amount of speculations. High resolution NMR in solids seemed to be a paradoxon. Broad structure­ less lines are usually encountered when dealing with NMR in solids. Only with the recent advent of mUltiple pulse, magic angle, cross-polarization, two-dimen­ sional and multiple-quantum spectroscopy and other techniques during the last decade it became possible to resolve finer details of nuclear spin interactions in solids. I have felt that graduate students, researchers and others beginning to get involved with these techniques needed a book which trea...

High-Resolution Imaging of Dense Gas Structure and Kinematics in Nearby Molecular Clouds with the CARMA Large Area Star Formation Survey

Science.gov (United States)

Storm, Shaye

This thesis utilizes new observations of dense gas in molecular clouds to develop an empirical framework for how clouds form structures which evolve into young cores and stars. Previous observations show the general turbulent and hierarchical nature of clouds. However, current understanding of the star formation pathway is limited by existing data that do not combine angular resolution needed to resolve individual cores with area coverage required to capture entire star-forming regions and with tracers that can resolve gas motions. The original contributions of this thesis to astrophysical research are the creation and analysis of the largest-area high-angular-resolution maps of dense gas in molecular clouds to-date, and the development of a non-binary dendrogram algorithm to quantify the hierarchical nature and three-dimensional morphology of cloud structure. I first describe the CARMA Large Area Star Formation Survey, which provides spectrally imaged N2H+, HCO+, and HCN (J = 1→0) emission across diverse regions of the Perseus and Serpens Molecular Clouds. I then present a detailed analysis of the Barnard 1 and L1451 regions in Perseus. A non-binary dendrogram analysis of Barnard 1 N2H emission and all L1451 emission shows that the most hierarchically complex gas corresponds with sub-regions actively forming young stars. I estimate the typical depth of molecular emission in each region using the spatial and kinematic properties of dendrogram-identified structures. Barnard 1 appears to be a sheet-like region at the largest scales with filamentary substructure, while the L1451 region is composed of more spatially distinct ellipsoidal structures. I then do a uniform comparison of the hierarchical structure and young stellar content of all five regions. The more evolved regions with the most young stellar objects (YSOs) and strongest emission have formed the most hierarchical levels. However, all regions show similar mean branching properties at each level

A high resolution atlas of the galactic plane at 12 microns and 25 microns

Science.gov (United States)

Price, Stephan D.; Korte, Rose M.; Sample, Rebecca S.; Kennealy, John P.; Gonsalves, Robert A.

1994-01-01

High resolution images of the 12 micron and 25 micron IRAS survey data from each HCON crossing the Galactic Plane are being created for those regions that the original IRAS processing labeled as confused. This encompasses the area within 100 deg longitude of the Galactic Center and within 3 deg to 10 deg of the Plane. The procedures used to create the images preserve the spatial resolution inherent in the IRAS instrument. The images are separated into diffuse and point source components and candidate sources are extracted from the point source image after non-linear spatial sharpening. Fluxes are estimated by convolving the candidate sources with the point response function and cross-correlating with the original point source image. A source is considered real if it is seen on at least two HCON's with a rather generous flux match but a stringent position criterion. A number of fields spanning a range of source densities from low to high have been examined. Initial analysis indicates that the imaging and extraction works quite well up to a source density of about 100 sources per square degree or down to roughly 0.8 Janskys.

High-voltage pixel sensors for ATLAS upgrade

Energy Technology Data Exchange (ETDEWEB)

Perić, I., E-mail: ivan.peric@ziti.uni-heidelberg.de [Heidelberg University, Institute of Computer Engineering, Mannheim (Germany); Kreidl, C.; Fischer, P. [Heidelberg University, Institute of Computer Engineering, Mannheim (Germany); Bompard, F.; Breugnon, P.; Clemens, J.-C.; Fougeron, D.; Liu, J.; Pangaud, P.; Rozanov, A.; Barbero, M. [CPPM, Marseille (France); Feigl, S.; Capeans, M.; Ferrere, D.; Pernegger, H.; Ristic, B. [CERN, Geneve (Switzerland); Muenstermann, D.; Gonzalez Sevilla, S.; La Rosa, A.; Miucci, A. [University of Geneve (Switzerland); and others

2014-11-21

The high-voltage (HV-) CMOS pixel sensors offer several good properties: a fast charge collection by drift, the possibility to implement relatively complex CMOS in-pixel electronics and the compatibility with commercial processes. The sensor element is a deep n-well diode in a p-type substrate. The n-well contains CMOS pixel electronics. The main charge collection mechanism is drift in a shallow, high field region, which leads to a fast charge collection and a high radiation tolerance. We are currently evaluating the use of the high-voltage detectors implemented in 180 nm HV-CMOS technology for the high-luminosity ATLAS upgrade. Our approach is replacing the existing pixel and strip sensors with the CMOS sensors while keeping the presently used readout ASICs. By intelligence we mean the ability of the sensor to recognize a particle hit and generate the address information. In this way we could benefit from the advantages of the HV sensor technology such as lower cost, lower mass, lower operating voltage, smaller pitch, smaller clusters at high incidence angles. Additionally we expect to achieve a radiation hardness necessary for ATLAS upgrade. In order to test the concept, we have designed two HV-CMOS prototypes that can be readout in two ways: using pixel and strip readout chips. In the case of the pixel readout, the connection between HV-CMOS sensor and the readout ASIC can be established capacitively.

The ATLAS3D project : X. On the origin of the molecular and ionized gas in early-type galaxies

NARCIS (Netherlands)

Davis, Timothy A.; Alatalo, Katherine; Sarzi, Marc; Bureau, Martin; Young, Lisa M.; Blitz, Leo; Serra, Paolo; Crocker, Alison F.; Krajnovic, Davor; McDermid, Richard M.; Bois, Maxime; Bournaud, Frederic; Cappellari, Michele; Davies, Roger L.; Duc, Pierre-Alain; de Zeeuw, P. Tim; Emsellem, Eric; Khochfar, Sadegh; Kuntschner, Harald; Lablanche, Pierre-Yves; Morganti, Raffaella; Naab, Thorsten; Oosterloo, Tom; Scott, Nicholas; Weijmans, Anne-Marie

2011-01-01

We make use of interferometric CO and H i observations, and optical integral-field spectroscopy from the ATLAS3D survey, to probe the origin of the molecular and ionized interstellar medium (ISM) in local early-type galaxies. We find that 36 +/- 5 per cent of our sample of fast-rotating early-type

A detailed and verified wind resource atlas for Denmark

Energy Technology Data Exchange (ETDEWEB)

Mortensen, N G; Landberg, L; Rathmann, O; Nielsen, M N [Risoe National Lab., Roskilde (Denmark); Nielsen, P [Energy and Environmental Data, Aalberg (Denmark)

1999-03-01

A detailed and reliable wind resource atlas covering the entire land area of Denmark has been established. Key words of the methodology are wind atlas analysis, interpolation of wind atlas data sets, automated generation of digital terrain descriptions and modelling of local wind climates. The atlas contains wind speed and direction distributions, as well as mean energy densities of the wind, for 12 sectors and four heights above ground level: 25, 45, 70 and 100 m. The spatial resolution is 200 meters in the horizontal. The atlas has been verified by comparison with actual wind turbine power productions from over 1200 turbines. More than 80% of these turbines were predicted to within 10%. The atlas will become available on CD-ROM and on the Internet. (au)

The human cell atlas

DEFF Research Database (Denmark)

Regev, Aviv; Teichmann, Sarah A.; Lander, Eric S.

2017-01-01

The recent advent of methods for high-throughput single-cell molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe to complete the 150-year-old effort to identify all cell types in the human body. The Human Cell Atlas Project is an international...... collaborative effort that aims to define all human cell types in terms of distinctive molecular profiles (such as gene expression profiles) and to connect this information with classical cellular descriptions (such as location and morphology). An open comprehensive reference map of the molecular state of cells...... in healthy human tissues would propel the systematic study of physiological states, developmental trajectories, regulatory circuitry and interactions of cells, and also provide a framework for understanding cellular dysregulation in human disease. Here we describe the idea, its potential utility, early...

Large Area, High Resolution N2H+ studies of dense gas in the Perseus and Serpens Molecular Clouds

Science.gov (United States)

Storm, Shaye; Mundy, Lee

2014-07-01

Star formation in molecular clouds occurs over a wide range of spatial scales and physical densities. Understanding the origin of dense cores thus requires linking the structure and kinematics of gas and dust from cloud to core scales. The CARMA Large Area Star Formation Survey (CLASSy) is a CARMA Key Project that spectrally imaged five diverse regions of the Perseus and Serpens Molecular Clouds in N2H+ (J=1-0), totaling over 800 square arcminutes. The observations have 7’’ angular resolution (~0.01 pc spatial resolution) to probe dense gas down to core scales, and use combined interferometric and single-dish data to fully recover line emission up to parsec scales. CLASSy observations are complete, and this talk will focus on three science results. First, the dense gas in regions with existing star formation has complex hierarchical structure. We present a non-binary dendrogram analysis for all regions and show that dense gas hierarchy correlates with star formation activity. Second, well-resolved velocity information for each dendrogram-identified structure allows a new way of looking at linewidth-size relations in clouds. Specifically, we find that non-thermal line-of-sight velocity dispersion varies weakly with structure size, while rms variation in the centroid velocity increases strongly with structure size. We argue that the typical line-of-sight depth of a cloud can be estimated from these relations, and that our regions have depths that are several times less than their extent on the plane of the sky. This finding is consistent with numerical simulations of molecular cloud turbulence that show that high-density sheets are a generic result. Third, N2H+ is a good tracer of cold, dense gas in filaments; we resolve multiple beams across many filaments, some of which are narrower than 0.1 pc. The centroid velocity fields of several filaments show gradients perpendicular to their major axis, which is a common feature in filaments formed from numerical

Atlas of high resolution infrared spectra of carbon dioxide

Science.gov (United States)

Rinsland, C. P.; Benner, D. C.; Devi, V. M.; Ferry, P. S.; Sutton, C. H.; Richardson, D. J.

1984-01-01

A long path, low pressure laboratory spectrum of carbon dioxide is presented for the spectral region 1830 to 2010/cm. The data were recorded at 0.01/cm resolution and room temperature with the Fourier transform spectrometer in the McMath solar telescope complex at Kitt Peak National Observatory. A list of positions and assignments is given for the 1038 lines observed in this region. A total of 30 bands and subbands of 12C1602, 13C1602, 12C160180, 12C160170, and 13C160180 were observed. Previously announced in STAR as N83-19598

Multi-Threaded Algorithms for GPGPU in the ATLAS High Level Trigger

Science.gov (United States)

Conde Muíño, P.; ATLAS Collaboration

2017-10-01

General purpose Graphics Processor Units (GPGPU) are being evaluated for possible future inclusion in an upgraded ATLAS High Level Trigger farm. We have developed a demonstrator including GPGPU implementations of Inner Detector and Muon tracking and Calorimeter clustering within the ATLAS software framework. ATLAS is a general purpose particle physics experiment located on the LHC collider at CERN. The ATLAS Trigger system consists of two levels, with Level-1 implemented in hardware and the High Level Trigger implemented in software running on a farm of commodity CPU. The High Level Trigger reduces the trigger rate from the 100 kHz Level-1 acceptance rate to 1.5 kHz for recording, requiring an average per-event processing time of ∼ 250 ms for this task. The selection in the high level trigger is based on reconstructing tracks in the Inner Detector and Muon Spectrometer and clusters of energy deposited in the Calorimeter. Performing this reconstruction within the available farm resources presents a significant challenge that will increase significantly with future LHC upgrades. During the LHC data taking period starting in 2021, luminosity will reach up to three times the original design value. Luminosity will increase further to 7.5 times the design value in 2026 following LHC and ATLAS upgrades. Corresponding improvements in the speed of the reconstruction code will be needed to provide the required trigger selection power within affordable computing resources. Key factors determining the potential benefit of including GPGPU as part of the HLT processor farm are: the relative speed of the CPU and GPGPU algorithm implementations; the relative execution times of the GPGPU algorithms and serial code remaining on the CPU; the number of GPGPU required, and the relative financial cost of the selected GPGPU. We give a brief overview of the algorithms implemented and present new measurements that compare the performance of various configurations exploiting GPGPU cards.

ATLAS FTK a - very complex - custom super computer

International Nuclear Information System (INIS)

Kimura, N

2016-01-01

In the LHC environment for high interaction pile-up, advanced techniques of analysing the data in real time are required in order to maximize the rate of physics processes of interest with respect to background processes. The Fast TracKer (FTK) is a track finding implementation at the hardware level that is designed to deliver full-scan tracks with p T above 1 GeV to the ATLAS trigger system for events passing the Level-1 accept (at a maximum rate of 100 kHz). In order to achieve this performance, a highly parallel system was designed and currently it is being commissioned within in ATLAS. Starting in 2016 it will provide tracks for the trigger system in a region covering the central part of the ATLAS detector, and will be extended to the full detector coverage. The system relies on matching hits coming from the silicon tracking detectors against one billion patterns stored in custom ASIC chips (Associative memory chip - AM06). In a first stage, coarse resolution hits are matched against the patterns and the accepted hits undergo track fitting implemented in FPGAs. Tracks with p T > 1GeV are delivered to the High Level Trigger within about 100 ps. Resolution of the tracks coming from FTK is close to the offline tracking and it will allow for reliable detection of primary and secondary vertexes at trigger level and improved trigger performance for b-jets and tau leptons. This contribution will give an overview of the FTK system and present the status of commissioning of the system. Additionally, the expected FTK performance will be briefly described. (paper)

The ATLAS3D project - X. On the origin of the molecular and ionized gas in early-type galaxies

NARCIS (Netherlands)

Davis, Timothy A.; Alatalo, Katherine; Sarzi, Marc; Bureau, Martin; Young, Lisa M.; Blitz, Leo; Serra, Paolo; Crocker, Alison F.; Krajnović, Davor; McDermid, Richard M.; Bois, Maxime; Bournaud, Frédéric; Cappellari, Michele; Davies, Roger L.; Duc, Pierre-Alain; de Zeeuw, P. Tim; Emsellem, Eric; Khochfar, Sadegh; Kuntschner, Harald; Lablanche, Pierre-Yves; Morganti, Raffaella; Naab, Thorsten; Oosterloo, Tom; Scott, Nicholas; Weijmans, Anne-Marie

2011-01-01

We make use of interferometric CO and H I observations, and optical integral-field spectroscopy from the ATLAS3D survey, to probe the origin of the molecular and ionized interstellar medium (ISM) in local early-type galaxies. We find that 36 ± 5 per cent of our sample of fast-rotating early-type

Crustal structure under the central High Atlas Mountains (Morocco) from geological and gravity data

Science.gov (United States)

Ayarza, P.; Alvarez-Lobato, F.; Teixell, A.; Arboleya, M. L.; Tesón, E.; Julivert, M.; Charroud, M.

2005-05-01

Seismic wide angle and receiver function results together with geological data have been used as constraints to build a gravity-based crustal model of the central High Atlas of Morocco. Integration of a newly acquired set of gravity values with public data allowed us to undertake 2-2.5D gravity modelling along two profiles that cross the entire mountain chain. Modelling suggests moderate crustal thickening, and a general state of Airy isostatic undercompensation. Localized thickening appears restricted to the vicinity of a north-dipping crustal-scale thrust fault, that offsets the Moho discontinuity and defines a small crustal root which accounts for the minimum Bouguer gravity anomaly values. Gravity modelling indicates that this root has a northeasterly strike, slightly oblique to the ENE general orientation of the High Atlas belt. A consequence of the obliquity between the High Atlas borders and its internal and deep structure is the lack of correlation between Bouguer gravity anomaly values and topography. Active buckling affecting the crust, a highly elevated asthenosphere, or a combination of both are addressed as side mechanisms that help to maintain the high elevations of the Atlas mountains.

A High-Granularity Timing Detector (HGTD) in ATLAS : Performance at the HL-LHC

CERN Document Server

Allaire, Corentin; The ATLAS collaboration

2018-01-01

The large increase of pileup is one of the main experimental challenges for the HL-LHC physics program. A powerful new way to address this challenge is to exploit the time spread of the interactions to distinguish between collisions occurring very close in space but well separated in time. A High-Granularity Timing Detector, based on low gain avalanche detector technology, is proposed for the ATLAS Phase-II upgrade. Covering the pseudorapidity region between 2.4 and 4.0, with a timing resolution of 30 ps for minimum-ionizing particles, this device will significantly improve the performance in the forward region. High-precision timing greatly improves the track-to-vertex associ- ation, leading to a performance similar to that in the central region for both jet and lepton reconstruction, as well as the tagging of heavy-flavour jets. These improvements in object reconstruction performance translate into impor- tant sensitivity gains and enhance the reach of the HL-LHC physics program. In addition, the HGTD offer...

Quantification of the fluorine containing drug 5-fluorouracil in cancer cells by GaF molecular absorption via high-resolution continuum source molecular absorption spectrometry

Energy Technology Data Exchange (ETDEWEB)

Krueger, Magnus [Freie Universitaet Berlin, Institut fuer Pharmazie, Pharmazeutische Chemie, Koenigin-Luise-Str. 2-4, 14195 Berlin (Germany); Huang, Mao-Dong; Becker-Ross, Helmut; Florek, Stefan [Leibniz Institut fuer Analytische Wissenschaften, ISAS-e.V., Department Berlin, Albert-Einstein-Str. 9, 12489 Berlin (Germany); Ott, Ingo [Technische Universitaet Carolo Wilhelmina zu Braunschweig, Institut fuer Medizinische und Pharmazeutische Chemie, Beethovenstr. 55, 38106 Braunschweig (Germany); Gust, Ronald, E-mail: ronald.gust@uibk.ac.at [Universitaet Innsbruck, Institut fuer Pharmazie, Pharmazeutische Chemie, Innrain 80/82, 6020 Innsbruck (Austria)

2012-03-15

The development of high-resolution continuum source molecular absorption spectrometry made the quantification of fluorine feasible by measuring the molecular absorption as gallium monofluoride (GaF). Using this new technique, we developed on the example of 5-fluorouracil (5-FU) a graphite furnace method to quantify fluorine in organic molecules. The effect of 5-FU on the generation of the diatomic GaF molecule was investigated. The experimental conditions such as gallium nitrate amount, temperature program, interfering anions (represented as corresponding acids) and calibration for the determination of 5-FU in standard solution and in cellular matrix samples were investigated and optimized. The sample matrix showed no effect on the sensitivity of GaF molecular absorption. A simple calibration curve using an inorganic sodium fluoride solution can conveniently be used for the calibration. The described method is sensitive and the achievable limit of detection is 0.23 ng of 5-FU. In order to establish the concept of 'fluorine as a probe in medicinal chemistry' an exemplary application was selected, in which the developed method was successfully demonstrated by performing cellular uptake studies of the 5-FU in human colon carcinoma cells. - Highlights: Black-Right-Pointing-Pointer Development of HR-CS MAS for quantification of fluorine bound to organic molecules Black-Right-Pointing-Pointer Measuring as molecular absorption of gallium monofluoride Black-Right-Pointing-Pointer Quantification of organic-bound fluorine in biological material Black-Right-Pointing-Pointer The concept of 'fluorine as a probe in medicinal chemistry' could be established.

ATLAS RPC commissioning status and cosmic ray test results

CERN Document Server

Bianco, Michele

2009-01-01

The muon trigger system of the ATLAS experiment consists of several sub-systems and each of them need to be tested and certified before LHC operation. In the barrel region Resistive Plate Chambers are employed. RPC detector and its level-1 trigger electronics are designed to detect and select high momentum muons with high time resolution and good tracking capability for a total surface of about 4000 m2. The commissioning phase provided an unique opportunity to demonstrate, before LHC start-up, the functionality of the muon trigger components such as detector chambers, level-1 trigger electronics, detector slow control system, data acquisition chain, software and computing. We present the status of ATLAS RPC detector, the problems met during the commissioning and the solutions found and, finally, its performances as obtained by acquiring cosmic rays.

A three-dimensional stereotaxic MRI brain atlas of the cichlid fish Oreochromis mossambicus.

Science.gov (United States)

Simões, José M; Teles, Magda C; Oliveira, Rui F; Van der Linden, Annemie; Verhoye, Marleen

2012-01-01

The African cichlid Oreochromis mossambicus (Mozambique tilapia) has been used as a model system in a wide range of behavioural and neurobiological studies. The increasing number of genetic tools available for this species, together with the emerging interest in its use for neurobiological studies, increased the need for an accurate hodological mapping of the tilapia brain to supplement the available histological data. The goal of our study was to elaborate a three-dimensional, high-resolution digital atlas using magnetic resonance imaging, supported by Nissl staining. Resulting images were viewed and analysed in all orientations (transverse, sagittal, and horizontal) and manually labelled to reveal structures in the olfactory bulb, telencephalon, diencephalon, optic tectum, and cerebellum. This high resolution tilapia brain atlas is expected to become a very useful tool for neuroscientists using this fish model and will certainly expand their use in future studies regarding the central nervous system.

Heavy Ion Physics at the LHC with the ATLAS Detector

CERN Document Server

Steinberg, P.

2007-01-01

The ATLAS detector at CERN will provide a high-resolution longitudinally-segmented calorimeter and precision tracking for the upcoming study of heavy ion collisions at the LHC (sqrt{s_{NN}=5520 GeV). The calorimeter covers |eta|<5 with both electromagnetic and hadronic sections, while the inner detector spectrometer covers |eta|<2.5. ATLAS will study a full range of observables necessary to characterize the hot and dense matter formed at the LHC. Global measurements (particle multiplicities, collective flow) will provide access into its thermodynamic and hydrodynamic properties. Measuring complete jets out to 100's of GeV will allow detailed studies of energy loss and its effect on jets. Quarkonia will provide a handle on deconfinement mechanisms. ATLAS will also study the structure of the nucleon and nucleus using forward physics probes and ultraperipheral collisions, both enabled by segmented Zero Degree Calorimeters.

Heavy ion physics at the LHC with the ATLAS detector

International Nuclear Information System (INIS)

Steinberg, P

2007-01-01

The ATLAS detector at CERN will provide a high-resolution longitudinally segmented calorimeter and precision tracking for the upcoming study of heavy ion collisions at the LHC (√s NN = 5520 GeV). The calorimeter covers |η| < 5 with both electromagnetic and hadronic sections, while the inner detector spectrometer covers |η| < 2.5. ATLAS will study a full range of observables necessary to characterize the hot and dense matter formed at the LHC. Global measurements (particle multiplicities, collective flow) will provide access into its thermodynamic and hydrodynamic properties. Measuring complete jets out to 100's of GeV will allow detailed studies of energy loss and its effect on jets. Quarkonia will provide a handle on deconfinement mechanisms. ATLAS will also study the structure of the nucleon and nucleus using forward physics probes and ultraperipheral collisions, both enabled by segmented zero degree calorimeters

Pyrosequencing™ : A one-step method for high resolution HLA typing

Directory of Open Access Journals (Sweden)

Marincola Francesco M

2003-11-01

Full Text Available Abstract While the use of high-resolution molecular typing in routine matching of human leukocyte antigens (HLA is expected to improve unrelated donor selection and transplant outcome, the genetic complexity of HLA still makes the current methodology limited and laborious. Pyrosequencing™ is a gel-free, sequencing-by-synthesis method. In a Pyrosequencing reaction, nucleotide incorporation proceeds sequentially along each DNA template at a given nucleotide dispensation order (NDO that is programmed into a pyrosequencer. Here we describe the design of a NDO that generates a pyrogram unique for any given allele or combination of alleles. We present examples of unique pyrograms generated from each of two heterozygous HLA templates, which would otherwise remain cis/trans ambiguous using standard sequencing based typing (SBT method. In addition, we display representative data that demonstrate long read and linear signal generation. These features are prerequisite of high-resolution typing and automated data analysis. In conclusion Pyrosequencing is a one-step method for high resolution DNA typing.

ATLAS

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Akhnazarov, V; Canepa, A; Bremer, J; Burckhart, H; Cattai, A; Voss, R; Hervas, L; Kaplon, J; Nessi, M; Werner, P; Ten kate, H; Tyrvainen, H; Vandelli, W; Krasznahorkay, A; Gray, H; Alvarez gonzalez, B; Eifert, T F; Rolando, G; Oide, H; Barak, L; Glatzer, J; Backhaus, M; Schaefer, D M; Maciejewski, J P; Milic, A; Jin, S; Von torne, E; Limbach, C; Medinnis, M J; Gregor, I; Levonian, S; Schmitt, S; Waananen, A; Monnier, E; Muanza, S G; Pralavorio, P; Talby, M; Tiouchichine, E; Tocut, V M; Rybkin, G; Wang, S; Lacour, D; Laforge, B; Ocariz, J H; Bertoli, W; Malaescu, B; Sbarra, C; Yamamoto, A; Sasaki, O; Koriki, T; Hara, K; Da silva gomes, A; Carvalho maneira, J; Marcalo da palma, A; Chekulaev, S; Tikhomirov, V; Snesarev, A; Buzykaev, A; Maslennikov, A; Peleganchuk, S; Sukharev, A; Kaplan, B E; Swiatlowski, M J; Nef, P D; Schnoor, U; Oakham, G F; Ueno, R; Orr, R S; Abouzeid, O; Haug, S; Peng, H; Kus, V; Vitek, M; Temming, K K; Dang, N P; Meier, K; Schultz-coulon, H; Geisler, M P; Sander, H; Schaefer, U; Ellinghaus, F; Rieke, S; Nussbaumer, A; Liu, Y; Richter, R; Kortner, S; Fernandez-bosman, M; Ullan comes, M; Espinal curull, J; Chiriotti alvarez, S; Caubet serrabou, M; Valladolid gallego, E; Kaci, M; Carrasco vela, N; Lancon, E C; Besson, N E; Gautard, V; Bracinik, J; Bartsch, V C; Potter, C J; Lester, C G; Moeller, V A; Rosten, J; Crooks, D; Mathieson, K; Houston, S C; Wright, M; Jones, T W; Harris, O B; Byatt, T J; Dobson, E; Hodgson, P; Hodgkinson, M C; Dris, M; Karakostas, K; Ntekas, K; Oren, D; Duchovni, E; Etzion, E; Oren, Y; Ferrer, L M; Testa, M; Doria, A; Merola, L; Sekhniaidze, G; Giordano, R; Ricciardi, S; Milazzo, A; Falciano, S; De pedis, D; Dionisi, C; Veneziano, S; Cardarelli, R; Verzegnassi, C; Soualah, R; Ochi, A; Ohshima, T; Kishiki, S; Linde, F L; Vreeswijk, M; Werneke, P; Muijs, A; Vankov, P H; Jansweijer, P P M; Dale, O; Lund, E; Bruckman de renstrom, P; Dabrowski, W; Adamek, J D; Wolters, H; Micu, L; Pantea, D; Tudorache, V; Mjoernmark, J; Klimek, P J; 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Gonzalez de la hoz, S; Guyot, C; Meyer, J; Schoeffel, L O; Garvey, J; Hawkes, C; Hillier, S J; Staley, R J; Salvatore, P F; Santoyo castillo, I; Carter, J; Yusuff, I B; Barlow, N R; Berry, T S; Savage, G; Wraight, K G; Steele, G E; Hughes, G; Walder, J W; Love, P A; Crone, G J; Waugh, B M; Boeser, S; Sarkar, A M; Holmes, A; Massey, R; Pinder, A; Nicholson, R; Korolkova, E; Katsoufis, I; Maltezos, S; Tsipolitis, G; Leontsinis, S; Levinson, L J; Shoa, M; Abramowicz, H E; Bella, G; Gershon, A; Urkovsky, E; Taiblum, N; Gatti, C; Della pietra, M; Lanza, A; Negri, A; Flaminio, V; Lacava, F; Petrolo, E; Pontecorvo, L; Rosati, S; Zanello, L; Pasqualucci, E; Di ciaccio, A; Giordani, M; Yamazaki, Y; Jinno, T; Nomachi, M; De jong, P J; Ferrari, P; Homma, J; Van der graaf, H; Igonkina, O B; Stugu, B S; Buanes, T; Pedersen, M; Turala, M; Olszewski, A J; Koperny, S Z; Onofre, A; Castro nunes fiolhais, M; Alexa, C; Cuciuc, C M; Akesson, T P A; Hellman, S L; Milstead, D A; Bondyakov, A; Pushnova, V; Budagov, Y; Minashvili, I; Romanov, V; Sniatkov, V; Tskhadadze, E; Kalinovskaya, L; Shalyugin, A; Tavkhelidze, A; Rumyantsev, L; Karpov, S; Soloshenko, A; Vostrikov, A; Borissov, E; Solodkov, A; Vorob'ev, A; Sidorov, S; Malyaev, V; Lee, S; Grudzinski, J J; Virzi, J S; Vahsen, S E; Lys, J; Penwell, J W; Yan, Z; Bernard, C S; Barreiro guimaraes da costa, J P; Oliver, J N; Merritt, F S; Brubaker, E M; Kapliy, A; Kim, J; Zutshi, V V; Burghgrave, B O; Abolins, M A; Arabidze, G; Caughron, S A; Frey, R E; Radloff, P T; Schernau, M; Murillo garcia, R; Porter, R A; Mccormick, C A; Karn, P J; Sliwa, K J; Demers konezny, S M; Strauss, M G; Mueller, J A; Izen, J M; Klimentov, A; Lynn, D; Polychronakos, V; Radeka, V; Sondericker, J I I I; Bathe, S; Duffin, S; Chen, H; De castro faria salgado, P E; Kersevan, B P; Lacker, H M; Schulz, H; Kubota, T; Tan, K G; Yabsley, B D; Nunes de moura junior, N; Pinfold, J; Soluk, R A; Ouellette, E A; Leitner, R; Sykora, T; Solar, M; Sartisohn, G; Hirschbuehl, D; Huning, D; Fischer, J; 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Vasilyeva, L; Speransky, M; Smirnov, S; Antonov, A; Bulekov, O; Tikhonov, Y; Sargsyan, L; Vardanyan, G; Budick, B; Kocian, M L; Luitz, S; Young, C C; Grenier, P J; Kelsey, M; Black, J E; Kneringer, E; Jussel, P; Horton, A J; Beaudry, J; Chandra, A; Ereditato, A; Topfel, C M; Mathieu, R; Bucci, F; Muenstermann, D; White, R M; He, M; Urban, J; Straka, M; Vrba, V; Schumacher, M; Parzefall, U; Mahboubi, K; Sommer, P O; Koepke, L H; Bethke, S; Moser, H; Wiesmann, M; Walkowiak, W A; Fleck, I J; Martinez-perez, M; Sanchez sanchez, C A; Jorgensen roca, S; Accion garcia, E; Sainz ruiz, C A; Valls ferrer, J A; Amoros vicente, G; Vives torrescasana, R; Ouraou, A; Formica, A; Hassani, S; Watson, M F; Cottin buracchio, G F; Bussey, P J; Saxon, D; Ferrando, J E; Collins-tooth, C L; Hall, D C; Cuhadar donszelmann, T; Dawson, I; Duxfield, R; Argyropoulos, T; Brodet, E; Livneh, R; Shougaev, K; Reinherz, E I; Guttman, N; Beretta, M M; Vilucchi, E; Aloisio, A; Patricelli, S; Caprio, M; Cevenini, F; De vecchi, C; Livan, M; Rimoldi, A; Vercesi, V; Ayad, R; Mastroberardino, A; Ciapetti, G; Luminari, L; Rescigno, M; Santonico, R; Salamon, A; Del papa, C; Kurashige, H; Homma, Y; Tomoto, M; Horii, Y; Sugaya, Y; Hanagaki, K; Bobbink, G; Kluit, P M; Koffeman, E N; Van eijk, B; Lee, H; Eigen, G; Dorholt, O; Strandlie, A; Strzempek, P B; Dita, S; Stoicea, G; Chitan, A; Leven, S S; Moa, T; Brenner, R; Ekelof, T J C; Olshevskiy, A; Roumiantsev, V; Chlachidze, G; Zimine, N; Gusakov, Y; Grigalashvili, N; Mineev, M; Potrap, I; Barashkou, A; Shoukavy, D; Shaykhatdenov, B; Pikelner, A; Gladilin, L; Ammosov, V; Abramov, A; Arik, M; Sahinsoy, M; Uysal, Z; Azizi, K; Hotinli, S C; Zhou, S; Berger, E; Blair, R; Underwood, D G; Einsweiler, K; Garcia-sciveres, M A; Siegrist, J L; Kipnis, I; Dahl, O; Holland, S; Barbaro galtieri, A; Smith, P T; Parua, N; Franklin, M; Mercurio, K M; Tong, B; Pod, E; Cole, S G; Hopkins, W H; Guest, D H; Severini, H; Marsicano, J J; Abbott, B K; Wang, Q; Lissauer, D; Ma, H; Takai, H; Rajagopalan, S; Protopopescu, S D; Snyder, S S; Undrus, A; Popescu, R N; Begel, M A; Blocker, C A; Amelung, C; Mandic, I; Macek, B; Tucker, B H; Citterio, M; Troncon, C; Orestano, D; Taccini, C; Romeo, G L; Dova, M T; Taylor, G N; Gesualdi manhaes, A; Mcpherson, R A; Sobie, R; Taylor, R P; Dolezal, Z; Kodys, P; Slovak, R; Sopko, B; Vacek, V; Sanders, M P; Hertenberger, R; Meineck, C; Becks, K; Kind, P; Sandhoff, M; Cantero garcia, J; De la torre perez, H; Castillo gimenez, V; Ros, E; Hernandez jimenez, Y; Chadelas, R; Santoni, C; Washbrook, A J; O'brien, B J; Wynne, B M; Mehta, A; Vossebeld, J H; Landon, M; Teixeira dias castanheira, M; Cerrito, L; Keates, J R; Fassouliotis, D; Chardalas, M; Manousos, A; Grachev, V; Seliverstov, D; Sedykh, E; Cakir, O; Ciftci, R; Edson, W; Prell, S A; Rosati, M; Stroman, T; Jiang, H; Neal, H A; Li, X; Gan, K K; Smith, D S; Kruse, M C; Ko, B R; Leung fook cheong, A M; Cole, B; Angerami, A R; Greene, Z S; Kroll, J I; Van berg, R P; Forbush, D A; Lubatti, H; Raisher, J; Shupe, M A; Wolin, S; Oshita, H; Gaudio, G; Das, R; Konig, A C; Croft, V A; Harvey, A; Maaroufi, F; Melo, I; Greenwood jr, Z D; Shabalina, E; Mchedlidze, G; Drechsler, E; Rieger, J K; Blackston, M; Colombo, T

2002-01-01

% ATLAS \\\\ \\\\ ATLAS is a general-purpose experiment for recording proton-proton collisions at LHC. The ATLAS collaboration consists of 144 participating institutions (June 1998) with more than 1750~physicists and engineers (700 from non-Member States). The detector design has been optimized to cover the largest possible range of LHC physics: searches for Higgs bosons and alternative schemes for the spontaneous symmetry-breaking mechanism; searches for supersymmetric particles, new gauge bosons, leptoquarks, and quark and lepton compositeness indicating extensions to the Standard Model and new physics beyond it; studies of the origin of CP violation via high-precision measurements of CP-violating B-decays; high-precision measurements of the third quark family such as the top-quark mass and decay properties, rare decays of B-hadrons, spectroscopy of rare B-hadrons, and $ B ^0 _{s} $-mixing. \\\\ \\\\The ATLAS dectector, shown in the Figure includes an inner tracking detector inside a 2~T~solenoid providing an axial...

Multi-scale hippocampal parcellation improves atlas-based segmentation accuracy

Science.gov (United States)

Plassard, Andrew J.; McHugo, Maureen; Heckers, Stephan; Landman, Bennett A.

2017-02-01

Known for its distinct role in memory, the hippocampus is one of the most studied regions of the brain. Recent advances in magnetic resonance imaging have allowed for high-contrast, reproducible imaging of the hippocampus. Typically, a trained rater takes 45 minutes to manually trace the hippocampus and delineate the anterior from the posterior segment at millimeter resolution. As a result, there has been a significant desire for automated and robust segmentation of the hippocampus. In this work we use a population of 195 atlases based on T1-weighted MR images with the left and right hippocampus delineated into the head and body. We initialize the multi-atlas segmentation to a region directly around each lateralized hippocampus to both speed up and improve the accuracy of registration. This initialization allows for incorporation of nearly 200 atlases, an accomplishment which would typically involve hundreds of hours of computation per target image. The proposed segmentation results in a Dice similiarity coefficient over 0.9 for the full hippocampus. This result outperforms a multi-atlas segmentation using the BrainCOLOR atlases (Dice 0.85) and FreeSurfer (Dice 0.75). Furthermore, the head and body delineation resulted in a Dice coefficient over 0.87 for both structures. The head and body volume measurements also show high reproducibility on the Kirby 21 reproducibility population (R2 greater than 0.95, p develop a robust tool for measurement of the hippocampus and other temporal lobe structures.

A new variable-resolution associative memory for high energy physics

International Nuclear Information System (INIS)

Annovi, A.; Amerio, S.; Beretta, M.; Bossini, E.; Crescioli, F.; Dell'Orso, M.; Giannetti, P.; Hoff, J.; Liu, T.; Magalotti, D.; Piendibene, M.; Sacco, I.; Schoening, A.; Soltveit, H. K.; Stabile, A.; Tripiccione, R.; Liberali, V.; Vitillo, R.; Volpi, G.

2011-01-01

We describe an important advancement for the Associative Memory device (AM). The AM is a VLSI processor for pattern recognition based on Content Addressable Memory (CAM) architecture. The AM is optimized for on-line track finding in high-energy physics experiments. Pattern matching is carried out by finding track candidates in coarse resolution 'roads'. A large AM bank stores all trajectories of interest, called 'patterns', for a given detector resolution. The AM extracts roads compatible with a given event during detector read-out. Two important variables characterize the quality of the AM bank: its 'coverage' and the level of fake roads. The coverage, which describes the geometric efficiency of a bank, is defined as the fraction of tracks that match at least one pattern in the bank. Given a certain road size, the coverage of the bank can be increased just adding patterns to the bank, while the number of fakes unfortunately is roughly proportional to the number of patterns in the bank. Moreover, as the luminosity increases, the fake rate increases rapidly because of the increased silicon occupancy. To counter that, we must reduce the width of our roads. If we decrease the road width using the current technology, the system will become very large and extremely expensive. We propose an elegant solution to this problem: the 'variable resolution patterns'. Each pattern and each detector layer within a pattern will be able to use the optimal width, but we will use a 'don't care' feature (inspired from ternary CAMs) to increase the width when that is more appropriate. In other words we can use patterns of variable shape. As a result we reduce the number of fake roads, while keeping the efficiency high and avoiding excessive bank size due to the reduced width. We describe the idea, the implementation in the new AM design and the implementation of the algorithm in the simulation. Finally we show the effectiveness of the 'variable resolution patterns' idea using simulated

Neoproterozoic–Cambrian stratigraphic framework of the Anti-Atlas and Ouzellagh promontory (High Atlas), Morocco

Science.gov (United States)

Alvaro, Jose Javier; Benziane, Fouad; Thomas, Robert; Walsh, Gregory J.; Yazidi, Abdelaziz

2014-01-01

In the last two decades, great progress has been made in the geochronological, chrono- and chemostratigraphic control of the Neoproterozoic and Cambrian from the Anti-Atlas Ranges and the Ouzellagh promontory (High Atlas). As a result, the Neoproterozoic is lithostratigraphically subdivided into: (i) the Lkest-Taghdout Group (broadly interpreted at c. 800–690 Ma) representative of rift-to-passive margin conditions on the northern West African craton; (ii) the Iriri (c. 760–740 Ma), Bou Azzer (c. 762–697 Ma) and Saghro (c. 760?–610 Ma) groups, the overlying Anezi, Bou Salda, Dadès and Tiddiline formations localized in fault-grabens, and the Ouarzazate Supergroup (c. 615–548 Ma), which form a succession of volcanosedimentary complexes recording the onset of the Pan-African orogeny and its aftermath; and (iii) the Taroudant (the Ediacaran–Cambrian boundary lying in the Tifnout Member of the Adoudou Formation), Tata, Feijas Internes and Tabanite groups that have recorded development of the late Ediacaran–Cambrian Atlas Rift. Recent discussions of Moroccan strata to select new global GSSPs by the International Subcommissions on Ediacaran and Cambrian Stratigraphy have raised the stratigraphic interest in this region. A revised and updated stratigraphic framework is proposed here to assist the tasks of both subcommissions and to fuel future discussions focused on different geological aspects of the Neoproterozoic–Cambrian time span.

Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

Directory of Open Access Journals (Sweden)

Theo A. Knijnenburg

2018-04-01

Full Text Available Summary: DNA damage repair (DDR pathways modulate cancer risk, progression, and therapeutic response. We systematically analyzed somatic alterations to provide a comprehensive view of DDR deficiency across 33 cancer types. Mutations with accompanying loss of heterozygosity were observed in over 1/3 of DDR genes, including TP53 and BRCA1/2. Other prevalent alterations included epigenetic silencing of the direct repair genes EXO5, MGMT, and ALKBH3 in ∼20% of samples. Homologous recombination deficiency (HRD was present at varying frequency in many cancer types, most notably ovarian cancer. However, in contrast to ovarian cancer, HRD was associated with worse outcomes in several other cancers. Protein structure-based analyses allowed us to predict functional consequences of rare, recurrent DDR mutations. A new machine-learning-based classifier developed from gene expression data allowed us to identify alterations that phenocopy deleterious TP53 mutations. These frequent DDR gene alterations in many human cancers have functional consequences that may determine cancer progression and guide therapy. : Knijnenburg et al. present The Cancer Genome Atlas (TCGA Pan-Cancer analysis of DNA damage repair (DDR deficiency in cancer. They use integrative genomic and molecular analyses to identify frequent DDR alterations across 33 cancer types, correlate gene- and pathway-level alterations with genome-wide measures of genome instability and impaired function, and demonstrate the prognostic utility of DDR deficiency scores. Keywords: The Cancer Genome Atlas PanCanAtlas project, DNA damage repair, somatic mutations, somatic copy-number alterations, epigenetic silencing, DNA damage footprints, mutational signatures, integrative statistical analysis, protein structure analysis

Frameworks to monitor and predict resource usage in the ATLAS High Level Trigger

CERN Document Server

Martin, Tim; The ATLAS collaboration

2016-01-01

The ATLAS High Level Trigger Farm consists of around 30,000 CPU cores which filter events at up to 100 kHz input rate. A costing framework is built into the high level trigger, this enables detailed monitoring of the system and allows for data-driven predictions to be made utilising specialist datasets. This talk will present an overview of how ATLAS collects in-situ monitoring data on both CPU usage and dataflow over the data-acquisition network during the trigger execution, and how these data are processed to yield both low level monitoring of individual selection-algorithms and high level data on the overall performance of the farm. For development and prediction purposes, ATLAS uses a special `Enhanced Bias' event selection. This mechanism will be explained along with how is used to profile expected resource usage and output event-rate of new physics selections, before they are executed on the actual high level trigger farm.

The design and performance of the ATLAS Inner Detector trigger in high pileup collisions at 13 TeV at the Large Hadron Collider

CERN Document Server

Grandi, Mario; The ATLAS collaboration

2018-01-01

The design and performance of the ATLAS Inner Detector (ID) trigger algorithms running online on the High Level Trigger (HLT) processor farm for 13 TeV LHC collision data with high pileup are discussed. The HLT ID tracking is a vital component in all physics signatures in the ATLAS Trigger for the precise selection of the rare or interesting events necessary for physics analysis without overwhelming the offline data storage in terms of both size and rate. To cope with the high interaction rates expected in the 13 TeV LHC collisions the ID trigger was redesigned during the 2013-15 long shutdown. The performance of the ID Trigger in both the 2016 and 2017 data from 13 TeV LHC collisions has been excellent and exceeded expectations, even at the very high interaction multiplicities observed at the end of data taking in 2017. The detailed efficiencies and resolutions of the trigger in a wide range of physics signatures are presented for the Run 2 data, illustrating the superb performance of the ID trigger algorith...

Enabling the ATLAS Experiment at the LHC for High Performance Computing

CERN Document Server

AUTHOR|(CDS)2091107; Ereditato, Antonio

In this thesis, I studied the feasibility of running computer data analysis programs from the Worldwide LHC Computing Grid, in particular large-scale simulations of the ATLAS experiment at the CERN LHC, on current general purpose High Performance Computing (HPC) systems. An approach for integrating HPC systems into the Grid is proposed, which has been implemented and tested on the „Todi” HPC machine at the Swiss National Supercomputing Centre (CSCS). Over the course of the test, more than 500000 CPU-hours of processing time have been provided to ATLAS, which is roughly equivalent to the combined computing power of the two ATLAS clusters at the University of Bern. This showed that current HPC systems can be used to efficiently run large-scale simulations of the ATLAS detector and of the detected physics processes. As a first conclusion of my work, one can argue that, in perspective, running large-scale tasks on a few large machines might be more cost-effective than running on relatively small dedicated com...

High resolution population maps for low income nations: combining land cover and census in East Africa.

Directory of Open Access Journals (Sweden)

Andrew J Tatem

2007-12-01

Full Text Available Between 2005 and 2050, the human population is forecast to grow by 2.7 billion, with the vast majority of this growth occurring in low income countries. This growth is likely to have significant social, economic and environmental impacts, and make the achievement of international development goals more difficult. The measurement, monitoring and potential mitigation of these impacts require high resolution, contemporary data on human population distributions. In low income countries, however, where the changes will be concentrated, the least information on the distribution of population exists. In this paper we investigate whether satellite imagery in combination with land cover information and census data can be used to create inexpensive, high resolution and easily-updatable settlement and population distribution maps over large areas.We examine various approaches for the production of maps of the East African region (Kenya, Uganda, Burundi, Rwanda and Tanzania and where fine resolution census data exists, test the accuracies of map production approaches and existing population distribution products. The results show that combining high resolution census, settlement and land cover information is important in producing accurate population distribution maps.We find that this semi-automated population distribution mapping at unprecedented spatial resolution produces more accurate results than existing products and can be undertaken for as little as $0.01 per km(2. The resulting population maps are a product of the Malaria Atlas Project (MAP: http://www.map.ox.ac.uk and are freely available.

High Resolution Population Maps for Low Income Nations: Combining Land Cover and Census in East Africa

Science.gov (United States)

Tatem, Andrew J.; Noor, Abdisalan M.; von Hagen, Craig; Di Gregorio, Antonio; Hay, Simon I.

2007-01-01

Background Between 2005 and 2050, the human population is forecast to grow by 2.7 billion, with the vast majority of this growth occurring in low income countries. This growth is likely to have significant social, economic and environmental impacts, and make the achievement of international development goals more difficult. The measurement, monitoring and potential mitigation of these impacts require high resolution, contemporary data on human population distributions. In low income countries, however, where the changes will be concentrated, the least information on the distribution of population exists. In this paper we investigate whether satellite imagery in combination with land cover information and census data can be used to create inexpensive, high resolution and easily-updatable settlement and population distribution maps over large areas. Methodology/Principal Findings We examine various approaches for the production of maps of the East African region (Kenya, Uganda, Burundi, Rwanda and Tanzania) and where fine resolution census data exists, test the accuracies of map production approaches and existing population distribution products. The results show that combining high resolution census, settlement and land cover information is important in producing accurate population distribution maps. Conclusions We find that this semi-automated population distribution mapping at unprecedented spatial resolution produces more accurate results than existing products and can be undertaken for as little as $0.01 per km2. The resulting population maps are a product of the Malaria Atlas Project (MAP: http://www.map.ox.ac.uk) and are freely available. PMID:18074022

Template based rodent brain extraction and atlas mapping.

Science.gov (United States)

Weimin Huang; Jiaqi Zhang; Zhiping Lin; Su Huang; Yuping Duan; Zhongkang Lu

2016-08-01

Accurate rodent brain extraction is the basic step for many translational studies using MR imaging. This paper presents a template based approach with multi-expert refinement to automatic rodent brain extraction. We first build the brain appearance model based on the learning exemplars. Together with the template matching, we encode the rodent brain position into the search space to reliably locate the rodent brain and estimate the rough segmentation. With the initial mask, a level-set segmentation and a mask-based template learning are implemented further to the brain region. The multi-expert fusion is used to generate a new mask. We finally combine the region growing based on the histogram distribution learning to delineate the final brain mask. A high-resolution rodent atlas is used to illustrate that the segmented low resolution anatomic image can be well mapped to the atlas. Tested on a public data set, all brains are located reliably and we achieve the mean Jaccard similarity score at 94.99% for brain segmentation, which is a statistically significant improvement compared to two other rodent brain extraction methods.

Performance of the ATLAS Precision Muon Chambers under LHC Operating Conditions

CERN Document Server

Deile, M.; Dubbert, J; Horvat, S; Kortner, O; Kroha, H; Manz, A; Mohrdieck, S; Rauscher, F; Richter, Robert; Staude, A

2004-01-01

For the muon spectrometer of the ATLAS detector at the large hadron collider (LHC), large drift chambers consisting of 6 to 8 layers of pressurized drift tubes are used for precision tracking covering an active area of 5000 m2 in the toroidal ?eld of superconducting air core magnets. The chambers have to provide a spatial resolution of 41 microns with Ar:CO2 (93:7) gas mixture at an absolute pressure of 3 bar and gas gain of 2?104. The environment in which the chambers will be operated is characterized by high neutron and background with counting rates of up to 100 per square cm and second. The resolution and efficiency of a chamber from the serial production for ATLAS has been investigated in a 100 GeV muon beam at photon irradiation rates as expected during LHC operation. A silicon strip detector telescope was used as external reference in the beam. The spatial resolution of a chamber is degraded by 4 ?m at the highest background rate. The detection e?ciency of the drift tubes is unchanged under irradiation...

Determination of sulfur in coal and ash slurry by high-resolution continuum source electrothermal molecular absorption spectrometry

Energy Technology Data Exchange (ETDEWEB)

Nakadi, Flávio V.; Rosa, Lilian R.; Veiga, Márcia A.M.S. da, E-mail: mamsveiga@ffclrp.usp.br

2013-10-01

We propose a procedure for the determination of sulfur in coal slurries by high resolution continuum source electrothermal molecular absorption spectrometry. The slurry, whose concentration is 1 mg mL{sup −1}, was prepared by mixing 50 mg of the sample with 5% v/v nitric acid and 0.04% m/v Triton X-100 and was homogenized manually. It sustained good stability. The determination was performed via CS molecular absorption at 257.592 nm, and the optimized vaporization temperature was 2500 °C. The accuracy of the method was ensured by analysis of certified reference materials SRM 1632b (trace elements in coal) and SRM 1633b (coal fly ash) from the National Institute of Standards and Technology, using external calibration with aqueous standards prepared in the same medium and used as slurry. We achieved good agreement with the certified reference materials within 95% confidence interval, LOD of 0.01% w/w, and RSD of 6%, which confirms the potential of the proposed method. - Highlights: • HR-CS ET MAS as a technique to determine sulfur in coal and ash • Utilization of (coal and coal fly ash) slurry as a sample preparation • Simple and fast method, which uses external calibration with aqueous standards without chemical modifier.

Photoionization of Ar2 at high resolution

International Nuclear Information System (INIS)

Dehmer, P.M.

1982-01-01

The relative photoionization cross section of Ar 2 was determined at a resolution of 0.07 A in the wavelength region from 800 to 850 A using a new photoionization mass spectrometer that combines a high intensity helium continuum lamp with a free supersonic molecular beam source. In the region studied, the photoionization cross section is dominated by autoionization of molecular Rydberg states, and the structure is diffuse owing to the combined effects of autoionization and predissociation. The molecular photoionization spectrum is extremely complex and shows little resemblence either to the corresponding atomic spectrum (indicating that the spectrum of the dimer is not simply a perturbed atomic spectrum) or to the molecular absorption spectrum at longer wavelengths. The regular vibrational progressions seen at longer wavelengths are absent above the first ionization potential. Detailed spectroscopic analysis is possible for only a small fraction of the observed features; however, vibrational intervals of 50--100 cm -1 suggest that some of the Rydberg states have B 2 Pi/sub 3/2g/ ionic cores. A comparison of the absorption and photoionization spectra shows that, at wavelengths shorter than approx.835 A, many of the excited states decay via mechanisms other than autoionization

The ATLAS Fast Tracker and Tracking at the High-Luminosity LHC

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00236423; The ATLAS collaboration

2016-01-01

The LHC’s increase in centre of mass energy and luminosity in 2015 makes controlling trigger rates with high efficiency challenging. The ATLAS Fast TracKer (FTK) is a hardware processor built to reconstruct tracks at a rate of up to 100 kHz and provide them to the high level trigger. The FTK reconstructs tracks by matching incoming detector hits with pre-defined track patterns stored in associative memory on custom ASICs. Inner detector hits are fit to these track patterns using modern FPGAs. These procedings describe the electronics system used for the FTK’s massive parallelization. An overview of the installation, commissioning and running of the system is given. The ATLAS upgrades planned to enable tracking at the High Luminosity LHC are also discussed.

Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry.

Science.gov (United States)

Mann, Benjamin F; Chen, Hongmei; Herndon, Elizabeth M; Chu, Rosalie K; Tolic, Nikola; Portier, Evan F; Roy Chowdhury, Taniya; Robinson, Errol W; Callister, Stephen J; Wullschleger, Stan D; Graham, David E; Liang, Liyuan; Gu, Baohua

2015-01-01

Microbial degradation of soil organic matter (SOM) is a key process for terrestrial carbon cycling, although the molecular details of these transformations remain unclear. This study reports the application of ultrahigh resolution mass spectrometry to profile the molecular composition of SOM and its degradation during a simulated warming experiment. A soil sample, collected near Barrow, Alaska, USA, was subjected to a 40-day incubation under anoxic conditions and analyzed before and after the incubation to determine changes of SOM composition. A CHO index based on molecular C, H, and O data was utilized to codify SOM components according to their observed degradation potentials. Compounds with a CHO index score between -1 and 0 in a water-soluble fraction (WSF) demonstrated high degradation potential, with a highest shift of CHO index occurred in the N-containing group of compounds, while similar stoichiometries in a base-soluble fraction (BSF) did not. Additionally, compared with the classical H:C vs O:C van Krevelen diagram, CHO index allowed for direct visualization of the distribution of heteroatoms such as N in the identified SOM compounds. We demonstrate that CHO index is useful not only in characterizing arctic SOM at the molecular level but also enabling quantitative description of SOM degradation, thereby facilitating incorporation of the high resolution MS datasets to future mechanistic models of SOM degradation and prediction of greenhouse gas emissions.

Polyphased Inversions of an Intracontinental Rift: Case Study of the Marrakech High Atlas, Morocco

Science.gov (United States)

Leprêtre, R.; Missenard, Y.; Barbarand, J.; Gautheron, C.; Jouvie, I.; Saddiqi, O.

2018-03-01

The High and Middle Atlas intraplate belts in Morocco correspond to Mesozoic rifted basins inverted during the Cenozoic during Africa/Eurasia convergence. The Marrakech High Atlas lies at a key location between Atlantic and Tethyan influences during the Mesozoic rifting phase but represents today high reliefs. Age and style of deformation and the mechanisms underlying the Cenozoic inversion are nevertheless still debated. To solve this issue, we produced new low-temperature thermochronology data (fission track and [U-Th]/He on apatite). Two cross sections were investigated in the western and eastern Marrakech High Atlas. Results of inverse modeling allow recognizing five cooling events attributed to erosion since Early Jurassic. Apart from a first erosional event from Middle/Late Jurassic to Early Cretaceous, four stages can be related to the convergence processes between Africa and Europe since the Late Cretaceous. Our data and thermal modeling results suggest that the inversion processes are guided at first order by the fault network inherited from the rifting episodes. The sedimentary cover and the Neogene lithospheric thinning produced a significant thermal weakening that facilitated the inversion of this ancient rift. Our data show that the Marrakech High Atlas has been behaving as a giant pop-up since the beginning of Cenozoic inversion stages.

Study of ATLAS TRT performance with GRID and supercomputers.

CERN Document Server

Krasnopevtsev, Dimitriy; The ATLAS collaboration; Belyaev, Nikita; Mashinistov, Ruslan; Ryabinkin, Evgeny

2015-01-01

After the early success in discovering a new particle consistent with the long awaited Higgs boson, Large Hadron Collider experiments are ready for the precision measurements and further discoveries that will be made possible by much higher LHC collision rates from spring 2015. A proper understanding of the detectors performance at highoccupancy conditions is important for many on-going physics analyses. The ATLAS Transition Radiation Tracker (TRT) is one of these detectors. TRT is a large straw tube tracking system that is the outermost of the three subsystems of the ATLAS Inner Detector (ID). TRT contributes significantly to the resolution for high-pT tracks in the ID providing excellent particle identification capabilities and electron-pion separation. ATLAS experiment is using Worldwide LHC Computing Grid. WLCG is a global collaboration of computer centers and provides seamless access to computing resources which include data storage capacity, processing power, sensors, visualization tools and more. WLCG ...

Tunable Microcavity-Stabilized Quantum Cascade Laser for Mid-IR High-Resolution Spectroscopy and Sensing.

Science.gov (United States)

Borri, Simone; Siciliani de Cumis, Mario; Insero, Giacomo; Bartalini, Saverio; Cancio Pastor, Pablo; Mazzotti, Davide; Galli, Iacopo; Giusfredi, Giovanni; Santambrogio, Gabriele; Savchenkov, Anatoliy; Eliyahu, Danny; Ilchenko, Vladimir; Akikusa, Naota; Matsko, Andrey; Maleki, Lute; De Natale, Paolo

2016-02-17

The need for highly performing and stable methods for mid-IR molecular sensing and metrology pushes towards the development of more and more compact and robust systems. Among the innovative solutions aimed at answering the need for stable mid-IR references are crystalline microresonators, which have recently shown excellent capabilities for frequency stabilization and linewidth narrowing of quantum cascade lasers with compact setups. In this work, we report on the first system for mid-IR high-resolution spectroscopy based on a quantum cascade laser locked to a CaF₂ microresonator. Electronic locking narrows the laser linewidth by one order of magnitude and guarantees good stability over long timescales, allowing, at the same time, an easy way for finely tuning the laser frequency over the molecular absorption line. Improvements in terms of resolution and frequency stability of the source are demonstrated by direct sub-Doppler recording of a molecular line.

Mechanical construction and installation of the ATLAS tile calorimeter

Czech Academy of Sciences Publication Activity Database

Abdallah, J.; Adragna, P.; Alexa, C.; Lokajíček, Miloš; Němeček, Stanislav; Přibyl, Lukáš

2013-01-01

Roč. 8, Nov (2013), 1-26 ISSN 1748-0221 Institutional support: RVO:68378271 Keywords : calorimeter * ATLAS * iron * scintillation counter * central region * CERN Lab * rapidity * ATLAS * CERN LHC Coll Subject RIV: BG - Nuclear, Atomic and Molecular Physics, Colliders Impact factor: 1.526, year: 2013

The high-resolution extraterrestrial solar spectrum (QASUMEFTS determined from ground-based solar irradiance measurements

Directory of Open Access Journals (Sweden)

J. Gröbner

2017-09-01

Full Text Available A high-resolution extraterrestrial solar spectrum has been determined from ground-based measurements of direct solar spectral irradiance (SSI over the wavelength range from 300 to 500 nm using the Langley-plot technique. The measurements were obtained at the Izaña Atmospheric Research Centre from the Agencia Estatal de Meteorología, Tenerife, Spain, during the period 12 to 24 September 2016. This solar spectrum (QASUMEFTS was combined from medium-resolution (bandpass of 0.86 nm measurements of the QASUME (Quality Assurance of Spectral Ultraviolet Measurements in Europe spectroradiometer in the wavelength range from 300 to 500 nm and high-resolution measurements (0.025 nm from a Fourier transform spectroradiometer (FTS over the wavelength range from 305 to 380 nm. The Kitt Peak solar flux atlas was used to extend this high-resolution solar spectrum to 500 nm. The expanded uncertainties of this solar spectrum are 2 % between 310 and 500 nm and 4 % at 300 nm. The comparison of this solar spectrum with solar spectra measured in space (top of the atmosphere gave very good agreements in some cases, while in some other cases discrepancies of up to 5 % were observed. The QASUMEFTS solar spectrum represents a benchmark dataset with uncertainties lower than anything previously published. The metrological traceability of the measurements to the International System of Units (SI is assured by an unbroken chain of calibrations leading to the primary spectral irradiance standard of the Physikalisch-Technische Bundesanstalt in Germany.

Optimization of the ATLAS (s)MDT readout electronics for high counting rates

Energy Technology Data Exchange (ETDEWEB)

Kortner, Oliver; Kroha, Hubert; Nowak, Sebastian; Schmidt-Sommerfeld, Korbinian [Max-Planck-Institut fuer Physik (Werner-Heisenberg-Institut), Foehringer Ring 6, 80805 Muenchen (Germany)

2016-07-01

In the ATLAS muon spectrometer, Monitored Drift Tube (MDT) chambers are used for precise muon track measurement. For the high background rates expected at HL-LHC, which are mainly due to neutrons and photons produced by interactions of the proton collision products in the detector and shielding, new small-diameter muon drift tube (sMDT)-chambers with half the drift tube diameter of the MDT-chambers and ten times higher rate capability have been developed. The standard MDT readout electronics uses bipolar shaping in front of a discriminator. This shaping leads to an undershoot of same charge but opposite polarity following each pulse. With count rates also the probability of having the subsequent pulse in this undershoot increases, which leads to losses in efficiency and spatial resolution. In order to decrease this effect, discrete prototype electronics including Baseline Restoration has been developed. Results of their tests and data taken with them during muon beamtime measurements at CERN's Gamma Irradiation Facility will be presented. which causes a deterioration of signal pulses by preceding background hits, leading to losses in muon efficiency and drift tube spatial resolution. In order to mitigate these so-called signal pile-up effects, new readout electronics with active baseline restoration (BLR) is under development. Discrete prototype electronics with BLR functionality has been tested in laboratory measurements and in the Gamma Irradiation Facility at CERN under high γ-irradiation rates. Results of the measurements are presented.

Characterisation and exploitation of Atlas electromagnetic calorimeter performances: muons study and timing resolution use

International Nuclear Information System (INIS)

Camard, A.

2004-10-01

The ATLAS detector in LHC involves electromagnetic calorimeters. The purpose of this work is to study the calorimeter response to the muons contaminating the beam used to test the different modules of ATLAS. We have showed how data analysis from the testing beam can be used to assure that the required performance for the study of the detector response to muons provides a complementary diagnostic tool for electrons. We have taken part into the design of a testing bench aimed at assessing the performance of the receiver circuit for timing and triggering signals. We have developed, in the framework of a quick simulation of ATLAS, a tool for the reconstruction in a simple and fast manner of the localization of the main event vertex by using the measurement of the arrival time of particles with ATLAS's calorimeters. It is likely that this tool will be fully used during the starting phase of the ATLAS experiment because it is easier to operate it quickly and is less sensitive to the background noise than traditional tools based on charged-particle tracks recognition inside the detector

High-resolution gas-phase spectroscopy of a single-bond axle rotary motor

NARCIS (Netherlands)

Maltseva, Elena; Amirjalayer, Saeed; Cnossen, Arjen; Browne, Wesley R.; Feringa, Ben L.; Buma, Wybren Jan

2017-01-01

High-resolution laser spectroscopy in combination with molecular beams and mass-spectrometry has been applied to study samples of a prototypical rotary motor. Vibrationally well-resolved excitation spectra have been recorded that are assigned, however, to a structural isomer of the original rotary

Determination of sulfur in food by high resolution continuum source flame molecular absorption spectrometry

Science.gov (United States)

Zambrzycka, Elżbieta; Godlewska-Żyłkiewicz, Beata

2014-11-01

In the present work, a fast, simple and sensitive analytical method for determination of sulfur in food and beverages by high resolution continuum source flame molecular absorption spectrometry was developed. The determination was performed via molecular absorption of carbon monosulfide, CS. Different CS rotational lines (257.959 nm, 258.033 nm, 258.055 nm), number of pixels and types of standard solution of sulfur, namely: sulfuric acid, sodium sulfate, ammonium sulfate, sodium sulfite, sodium sulfide, DL-cysteine, and L-cystine, were studied in terms of sensitivity, repeatability of results as well as limit of detection and limit of quantification. The best results were obtained for measurements of absorption of the CS molecule at 258.055 nm at the wavelength range covering 3 pixels and DL-cysteine in 0.2 mol L- 1 HNO3 solution as a calibration standard. Under optimized conditions the limit of detection and the limit of quantification achieved for sulfur were 10.9 mg L- 1 and 36.4 mg L- 1, respectively. The repeatability of the results expressed as relative standard deviation was typically beverage samples with added known amount of sulfur standard. The recovery of analyte from such samples was in the range of 93-105% with the repeatability in the range of 4.1-5.0%. The developed method was applied for the determination of sulfur in milk (194 ± 10 mg kg- 1), egg white (2188 ± 29 mg kg- 1), mineral water (31.0 ± 0.9 mg L- 1), white wine (260 ± 4 mg L- 1) and red wine (82 ± 2 mg L- 1), as well as in sample rich in ions, such as bitter mineral water (6900 ± 100 mg L- 1).

Online Calibration and Performance of the ATLAS Pixel Detector

CERN Document Server

Keil, M

2011-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN. It consists of 1744 silicon sensors equipped with approximately 80 million electronic channels, providing typically three measurement points with high resolution for particles emerging from the beam-interaction region, thus allowing measuring particle tracks and secondary vertices with very high precision. The readout system of the Pixel Detector is based on a bi-directional optical data transmission system between the detector and the data acquisition system with an individual link for each of the 1744 modules. Signal conversion components are located on both ends, approximately 80 m apart. This paper describes the tuning and calibration of the optical links and the detector modules, including measurements of threshold, noise, charge measurement, timing performance and the sensor leakage current.

Multi­-Threaded Algorithms for General purpose Graphics Processor Units in the ATLAS High Level Trigger

CERN Document Server

Conde Mui\\~no, Patricia; The ATLAS collaboration

2016-01-01

General purpose Graphics Processor Units (GPGPU) are being evaluated for possible future inclusion in an upgraded ATLAS High Level Trigger farm. We have developed a demonstrator including GPGPU implementations of Inner Detector and Muon tracking and Calorimeter clustering within the ATLAS software framework. ATLAS is a general purpose particle physics experiment located on the LHC collider at CERN. The ATLAS Trigger system consists of two levels, with level 1 implemented in hardware and the High Level Trigger implemented in software running on a farm of commodity CPU. The High Level Trigger reduces the trigger rate from the 100 kHz level 1 acceptance rate to 1 kHz for recording, requiring an average per­-event processing time of ~250 ms for this task. The selection in the high level trigger is based on reconstructing tracks in the Inner Detector and Muon Spectrometer and clusters of energy deposited in the Calorimeter. Performing this reconstruction within the available farm resources presents a significant ...

Determination of sulfur in bovine serum albumin and L-cysteine using high-resolution continuum source molecular absorption spectrometry of the CS molecule

Science.gov (United States)

Andrade-Carpente, Eva; Peña-Vázquez, Elena; Bermejo-Barrera, Pilar

2016-08-01

In this study, the content of sulfur in bovine serum albumin and L-cysteine was determined using high-resolution continuum source molecular absorption spectrometry of the CS molecule, generated in a reducing air-acetylene flame. Flame conditions (height above the burner, measurement time) were optimized using a 3.0% (v/v) sulfuric acid solution. A microwave lab station (Ethos Plus MW) was used for the digestion of both compounds. During the digestion step, sulfur was converted to sulfate previous to the determination. Good repeatability (4-10%) and analytical recovery (91-106%) was obtained.

The design and performance of the ATLAS Inner Detector trigger in high pileup collisions at 13 TeV at the Large Hadron Collider

CERN Document Server

Sotiropoulou, Calliope Louisa; The ATLAS collaboration

2017-01-01

The design and performance of the ATLAS Inner Detector (ID) trigger algorithms running online on the high level trigger (HLT) processor farm for 13 TeV LHC collision data with high pileup are discussed. The HLT ID tracking is a vital component in all physics signatures in the ATLAS Trigger for the precise selection of the rare or interesting events necessary for physics analysis without overwhelming the offine data storage in terms of both size and rate. To cope with the high expected interaction rates in the 13 TeV LHC collisions the ID trigger was redesigned during the 2013-15 long shutdown. The performance of the ID Trigger in the 2016 data from 13 TeV LHC collisions has been excellent and exceeded expectations as the interaction multiplicity increased throughout the year. The detailed efficiencies and resolutions of the trigger in a wide range of physics signatures are presented, to demonstrate how the trigger responded well under the extreme pileup conditions. The performance of the ID Trigger algorithms...

The design and performance of the ATLAS Inner Detector trigger in high pileup collisions at 13 TeV at the Large Hadron Collider

CERN Document Server

Kilby, Callum; The ATLAS collaboration

2017-01-01

The design and performance of the ATLAS Inner Detector (ID) trigger algorithms running online on the high level trigger (HLT) processor farm for 13 TeV LHC collision data with high pileup are discussed. The HLT ID tracking is a vital component in all physics signatures in the ATLAS Trigger for the precise selection of the rare or interesting events necessary for physics analysis without overwhelming the offline data storage in terms of both size and rate. To cope with the high expected interaction rates in the 13 TeV LHC collisions the ID trigger was redesigned during the 2013-15 long shutdown. The performance of the ID Trigger in the 2016 data from 13 TeV LHC collisions has been excellent and exceeded expectations as the interaction multiplicity increased throughout the year. The detailed efficiencies and resolutions of the trigger in a wide range of physics signatures are presented, to demonstrate how the trigger responded well under the extreme pileup conditions. The performance of the ID Trigger algorithm...

ATLAS Muon Spectrometer Upgrades for the High Luminosity LHC

CERN Document Server

Valderanis, Chrysostomos; The ATLAS collaboration

2015-01-01

ATLAS Muon Spectrometer Upgrades for the High Luminosity LHC The luminosity of the LHC will increase up to 2x10^34 cm-2s-1 after the long shutdown in 2019 (phase-1 upgrade) and up to 7x10^34 cm-2s-1 after the long shutdown in 2025 (phase-2 upgrade). In order to cope with the increased particle fluxes, upgrades are envisioned for the ATLAS muon spectrometer. At phase-1, the current innermost stations of the ATLAS muon endcap tracking system (the Small Wheels) will be upgraded with 2x4-layer modules of Micromega detectors, sandwiched by two 4 layer modules of small strip Thin Gap Chambers on either side. Each 4-layer module of the so-called New Small Wheels covers a surface area of approximately 2 to 3 m2 for a total active area of 1200 m2 each for the two technologies. On such large area detectors, the mechanical precision (30 \\mu m along the precision coordinate and 80 \\mu m along the beam) is a key point and must be controlled and monitored along the process of construction and integration. The design and re...

A neural network clustering algorithm for the ATLAS silicon pixel detector

Czech Academy of Sciences Publication Activity Database

Aad, G.; Abbott, B.; Abdallah, J.; Böhm, Jan; Chudoba, Jiří; Havránek, Miroslav; Hejbal, Jiří; Jakoubek, Tomáš; Kepka, Oldřich; Kupčo, Alexander; Kůs, Vlastimil; Lokajíček, Miloš; Lysák, Roman; Marčišovský, Michal; Mikeštíková, Marcela; Myška, M.; Němeček, Stanislav; Šícho, Petr; Staroba, Pavel; Svatoš, Michal; Taševský, Marek; Vrba, Václav

2014-01-01

Roč. 9, Sep (2014), s. 1-38 ISSN 1748-0221 R&D Projects: GA MŠk(CZ) LG13009 Institutional support: RVO:68378271 Keywords : Monte Carlo * resolution * impact parameter * cluster * ATLAS * tracks * charged particle * CERN LHC Coll * longitudinal * transverse * splitting Subject RIV: BF - Elementary Particles and High Energy Physics Impact factor: 1.399, year: 2014

Jet reconstruction and performance using particle flow with the ATLAS Detector

Czech Academy of Sciences Publication Activity Database

Aaboud, M.; Aad, G.; Abbott, B.; Chudoba, Jiří; Hejbal, Jiří; Hladík, Ondřej; Jakoubek, Tomáš; Kepka, Oldřich; Kupčo, Alexander; Kůs, Vlastimil; Lokajíček, Miloš; Lysák, Roman; Marčišovský, Michal; Mikeštíková, Marcela; Němeček, Stanislav; Penc, Ondřej; Šícho, Petr; Staroba, Pavel; Svatoš, Michal; Taševský, Marek

2017-01-01

Roč. 77, č. 7 (2017), s. 1-47, č. článku 466. ISSN 1434-6044 Institutional support: RVO:68378271 Keywords : ATLAS * CERN LHC Coll * resolution * stability * pile-up * experimental results * 8000 GeV-cms Subject RIV: BF - Elementary Particles and High Energy Physics OBOR OECD: Particles and field physics Impact factor: 5.331, year: 2016

Investigation of the Behavior of Ethylene Molecular Films Using High Resolution Adsorption Isotherms and Neutron Scattering

International Nuclear Information System (INIS)

Barbour, Andi M.; Telling, Mark T.; Larese, John Z.

2010-01-01

The wetting behavior of ethylene adsorbed on MgO(100) was investigated from 83-135 K using high resolution volumetric adsorption isotherms. The results are compared to ethylene adsorption on graphite, a prototype adsorption system, in an effort to gain further insight into the forces that drive the observed film growth. Layering transitions for ethylene on MgO(100) are observed below the bulk triple point of ethylene (T = 104.0 K). The formation of three discrete adlayers is observed on the MgO(100) surface; onset of the second and third layers occurs at 79.2 ± 1.3 K and 98.3 ± 0.9 K, respectively. Thermodynamic quantities such as differential enthalpy and entropy, heat of adsorption, and isosteric heat of adsorption are determined and compared to the previously published values for ethylene on graphite. The average area occupied by a ethylene molecule on MgO(100) is 22.6 ± 1.1 (angstrom) 2 molecule -1 . The locations of two phase transitions are identified (i.e., layer critical temperatures at T c2 (n=1) at 108.6 ± 1.7 K and T c2 (n=2) at 116.5 ± 1.2 K) and a phase diagram is proposed. Preliminary neutron diffraction measurements reveal evidence of a monolayer solid with a lattice constant of ∼4.2 (angstrom). High resolution INS measurements show that the onset to dynamical motion and monolayer melting take place at 35 K and 65 K, respectively. The data reported here exhibit a striking similarity to ethylene on graphite which suggests that molecule-molecule interactions play an important role in determining the physical properties and growth of molecularly thin ethylene films.

Surgical anatomy of the temporal bone: an atlas

International Nuclear Information System (INIS)

Chan, L.L.; Manolidis, S.; Taber, K.H.; Hayman, L.A.

2001-01-01

This atlas demonstrates the usefulness of reconstructed high-resolution CT for planning temporal bone surgery. The first part focuses on a sagittal plane, the second on a rotated longitudinal plane, and the third on a rotated transverse plane. We believe knowledge of temporal bone anatomy in these planes facilitates surgical planning by showing anatomic relationships and providing a customized map for each patient. This decreases the likelihood of surgical mishap and improves teaching. (orig.)

ATLAS FTK a - very complex - custom parallel supercomputer

CERN Document Server

Kimura, Naoki; The ATLAS collaboration

2016-01-01

In the ever increasing pile-up LHC environment advanced techniques of analysing the data are implemented in order to increase the rate of relevant physics processes with respect to background processes. The Fast TracKer (FTK) is a track finding implementation at hardware level that is designed to deliver full-scan tracks with $p_{T}$ above 1GeV to the ATLAS trigger system for every L1 accept (at a maximum rate of 100kHz). In order to achieve this performance a highly parallel system was designed and now it is under installation in ATLAS. In the beginning of 2016 it will provide tracks for the trigger system in a region covering the central part of the ATLAS detector, and during the year it's coverage will be extended to the full detector coverage. The system relies on matching hits coming from the silicon tracking detectors against 1 billion patterns stored in specially designed ASICS chips (Associative memory - AM06). In a first stage coarse resolution hits are matched against the patterns and the accepted h...

ATLAS Plans for the High-Luminosity LHC

CERN Document Server

Walkowiak, Wolfgang; The ATLAS collaboration

2018-01-01

Despite the excellent performance of the Large Hadron Collider (LHC) at CERN an upgrade to a High-Luminosity LHC (HL-LHC) with a peak instantaneous luminosity of up to $7.5\\times 10^{34}$ fb$^{-1}$ will be required after collecting a total dataset of approximately 300 fb$^{-1}$ by the end of Run 3 (in 2023). The upgrade will substantially increase the statistics available to the experiments for addressing the remaining open puzzles of particle physics. The HL-LHC is expected to start operating in 2026 and to deliver up to 4000 fb$^{-1}$ within twelve years. The corresponding upgrades of the ATLAS detector and the ATLAS beauty physics program at the HL-LHC are being discussed. As examples, preliminary results on the expected sensitivities for the search for CP-violation in the decay channel $B^0_s \\to J/\\psi \\,\\phi$ using the parameters $\\Delta\\Gamma_s$ and $\\phi_s$ as well as projections for the branching fractions of the rare decays $B^0_s \\to \\mu^+\\mu^-$ and $B^0\\to\\mu^+\\mu^-$ are provided.

Tunable Microcavity-Stabilized Quantum Cascade Laser for Mid-IR High-Resolution Spectroscopy and Sensing

Directory of Open Access Journals (Sweden)

Simone Borri

2016-02-01

Full Text Available The need for highly performing and stable methods for mid-IR molecular sensing and metrology pushes towards the development of more and more compact and robust systems. Among the innovative solutions aimed at answering the need for stable mid-IR references are crystalline microresonators, which have recently shown excellent capabilities for frequency stabilization and linewidth narrowing of quantum cascade lasers with compact setups. In this work, we report on the first system for mid-IR high-resolution spectroscopy based on a quantum cascade laser locked to a CaF2 microresonator. Electronic locking narrows the laser linewidth by one order of magnitude and guarantees good stability over long timescales, allowing, at the same time, an easy way for finely tuning the laser frequency over the molecular absorption line. Improvements in terms of resolution and frequency stability of the source are demonstrated by direct sub-Doppler recording of a molecular line.

The ATLAS trigger: high-level trigger commissioning and operation during early data taking

International Nuclear Information System (INIS)

Goncalo, R

2008-01-01

The ATLAS experiment is one of the two general-purpose experiments due to start operation soon at the Large Hadron Collider (LHC). The LHC will collide protons at a centre of mass energy of 14 TeV, with a bunch-crossing rate of 40 MHz. The ATLAS three-level trigger will reduce this input rate to match the foreseen offline storage capability of 100-200 Hz. This paper gives an overview of the ATLAS High Level Trigger focusing on the system design and its innovative features. We then present the ATLAS trigger strategy for the initial phase of LHC exploitation. Finally, we report on the valuable experience acquired through in-situ commissioning of the system where simulated events were used to exercise the trigger chain. In particular we show critical quantities such as event processing times, measured in a large-scale HLT farm using a complex trigger menu

Torsional tapping atomic force microscopy for molecular resolution imaging of soft matter

Science.gov (United States)

Hobbs, Jamie; Mullin, Nic

2012-02-01

Despite considerable advances in image resolution on challenging, soft systems, a method for obtaining molecular resolution on `real' samples with significant surface roughness has remained elusive. Here we will show that a relatively new technique, torsional tapping AFM (TTAFM), is capable of imaging with resolution down to 3.7 Angrstrom on the surface of `bulk' polymer films [1]. In TTAFM T-shaped cantilevers are driven into torsional oscillation. As the tip is offset from the rotation axis this provides a tapping motion. Due to the high frequency and Q of the oscillation and relatively small increase in spring constant, improved cantilever dynamics and force sensitivity are obtained. As the tip offset from the torsional axis is relatively small (typically 25 microns), the optical lever sensitivity is considerably improved compared to flexural oscillation. Combined these give a reduction in noise floor by a factor of 12 just by changing the cantilever geometry. The ensuing low noise allows the use of ultra-sharp `whisker' tips with minimal blunting. As the cantilevers remain soft in the flexural axis, the force when imaging with error is also reduced, further protecting the tip. We will show that this combination allows routine imaging of the molecular structure of semicrystalline polymer films, including chain folds, loose loops and tie-chains in polyethylene, and the helical conformation of polypropylene within the crystal, using a standard, commercial AFM. [4pt] [1] N Mullin, JK Hobbs, PRL 107, 197801 (2011)

Determination of phospholipids in soybean lecithin samples via the phosphorus monoxide molecule by high-resolution continuum source graphite furnace molecular absorption spectrometry.

Science.gov (United States)

Pires, Laís N; Brandão, Geovani C; Teixeira, Leonardo S G

2017-06-15

This paper presents a method for determining phospholipids in soybean lecithin samples by phosphorus determination using high-resolution continuum source graphite furnace molecular absorption spectrometry (HR-CS GF MAS) via molecular absorption of phosphorus monoxide. Samples were diluted in methyl isobutyl ketone. The best conditions were found to be 213.561nm with a pyrolysis temperature of 1300°C, a volatilization temperature of 2300°C and Mg as a chemical modifier. To increase the analytical sensitivity, measurement of the absorbance signal was obtained by summing molecular transition lines for PO surrounding 213nm: 213.561, 213.526, 213.617 and 213.637nm. The limit of detection was 2.35mgg -1 and the precision, evaluated as relative standard deviation (RSD), was 2.47% (n=10) for a sample containing 2.2% (w/v) phosphorus. The developed method was applied for the analysis of commercial samples of soybean lecithin. The determined concentrations of phospholipids in the samples varied between 38.1 and 45% (w/v). Copyright © 2017 Elsevier Ltd. All rights reserved.

3D high spectral and spatial resolution imaging of ex vivo mouse brain

International Nuclear Information System (INIS)

Foxley, Sean; Karczmar, Gregory S.; Domowicz, Miriam; Schwartz, Nancy

2015-01-01

present at +7.0 Hz and may be specific to white matter anatomy. Moreover, a frequency shift of 6.76 ± 0.55 Hz was measured between the molecular and granular layers of the cerebellum. This shift is demonstrated in corresponding spectra; water peaks from voxels in the molecular and granular layers are consistently 2 bins apart (7.0 Hz, as dictated by the spectral resolution) from one another. Conclusions: High spectral and spatial resolution MR imaging has the potential to accurately measure the changes in the water resonance in small voxels. This information can guide optimization and interpretation of more commonly used, more rapid imaging methods that depend on image contrast produced by local susceptibility gradients. In addition, with improved sampling methods, high spectral and spatial resolution data could be acquired in reasonable run times, and used for in vivo scans to increase sensitivity to variations in local susceptibility

Determination of boron isotope ratios by high-resolution continuum source molecular absorption spectrometry using graphite furnace vaporizers

Science.gov (United States)

Abad, Carlos; Florek, Stefan; Becker-Ross, Helmut; Huang, Mao-Dong; Heinrich, Hans-Joachim; Recknagel, Sebastian; Vogl, Jochen; Jakubowski, Norbert; Panne, Ulrich

2017-10-01

Boron isotope amount ratios n(10B)/n(11B) have been determined by monitoring the absorption spectrum of boron monohydride (BH) in a graphite furnace using high-resolution continuum source molecular absorption spectrometry (HR-CS-MAS). Bands (0 → 0) and (1 → 1) for the electronic transition X1Σ+ → A1Π were evaluated around wavelengths 433.1 nm and 437.1 nm respectively. Clean and free of memory effect molecular spectra of BH were recorded. In order to eliminate the memory effect of boron, a combination of 2% (v/v) hydrogen gas in argon and 1% trifluoromethane in argon, an acid solution of calcium chloride and mannitol as chemical modifiers was used. Partial least square regression (PLS) for analysis of samples and reference materials were applied. For this, a spectral library with different isotopes ratios for PLS regression was built. Results obtained around the 433.1 nm and 437.1 nm spectral regions are metrologically compatible with those reported by mass spectrometric methods. Moreover, for the evaluated region of 437 nm, an accuracy of 0.15‰ is obtained as the average deviation from the isotope reference materials. Expanded uncertainties with a coverage factor of k = 2 range between 0.15 and 0.44‰. This accuracy and precision are compatible with those obtained by mass spectrometry for boron isotope ratio measurements.

Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry.

Science.gov (United States)

Kind, Tobias; Fiehn, Oliver

2017-09-01

Complete structural elucidation of natural products is commonly performed by nuclear magnetic resonance spectroscopy (NMR), but annotating compounds to most likely structures using high-resolution tandem mass spectrometry is a faster and feasible first step. The CASMI contest 2016 (Critical Assessment of Small Molecule Identification) provided spectra of eighteen compounds for the best manual structure identification in the natural products category. High resolution precursor and tandem mass spectra (MS/MS) were available to characterize the compounds. We used the Seven Golden Rules, Sirius2 and MS-FINDER software for determination of molecular formulas, and then we queried the formulas in different natural product databases including DNP, UNPD, ChemSpider and REAXYS to obtain molecular structures. We used different in-silico fragmentation tools including CFM-ID, CSI:FingerID and MS-FINDER to rank these compounds. Additional neutral losses and product ion peaks were manually investigated. This manual and time consuming approach allowed for the correct dereplication of thirteen of the eighteen natural products.

Performance of ATLAS tracking detector

CERN Document Server

Lacuesta, V; The ATLAS collaboration

2012-01-01

The track and vertex reconstruction algorithms of the ATLAS Inner Detector have demonstrated excellent performance in the early data from the LHC. However, the rapidly increas- ing number of interactions per bunch crossing introduces new challenges both in computational aspects and physics performance. The combination of both silicon and gas based detectors provides high precision impact parameter and momentum measurement of charged particles, with high efficiency and small fake rate. Vertex reconstruction is used to identify with high efficiency the hard scattering process and to measure the amount of pile-up interactions, both aspects are cru- cial for many physics analyses. The performance of track and vertex reconstruction efficiency and resolution achieved in the 2011 and 2012 data-taking period are presented.

L1Track: A fast Level 1 track trigger for the ATLAS high luminosity upgrade

International Nuclear Information System (INIS)

Cerri, Alessandro

2016-01-01

With the planned high-luminosity upgrade of the LHC (HL-LHC), the ATLAS detector will see its collision rate increase by approximately a factor of 5 with respect to the current LHC operation. The earliest hardware-based ATLAS trigger stage (“Level 1”) will have to provide a higher rejection factor in a more difficult environment: a new improved Level 1 trigger architecture is under study, which includes the possibility of extracting with low latency and high accuracy tracking information in time for the decision taking process. In this context, the feasibility of potential approaches aimed at providing low-latency high-quality tracking at Level 1 is discussed. - Highlights: • HL-LH requires highly performing event selection. • ATLAS is studying the implementation of tracking at the very first trigger level. • Low latency and high-quality seem to be achievable with dedicated hardware and adequate detector readout architecture.

The ATLAS High Level Trigger Steering Framework and the Trigger Configuration System.

CERN Document Server

Perez Cavalcanti, Tiago; The ATLAS collaboration

2011-01-01

The ATLAS detector system installed in the Large Hadron Collider (LHC) at CERN is designed to study proton-proton and nucleus-nucleus collisions with a maximum centre of mass energy of 14 TeV at a bunch collision rate of 40MHz. In March 2010 the four LHC experiments saw the first proton-proton collisions at 7 TeV. Still within the year a collision rate of nearly 10 MHz is expected. At ATLAS, events of potential interest for ATLAS physics are selected by a three-level trigger system, with a final recording rate of about 200 Hz. The first level (L1) is implemented in custom hardware; the two levels of the high level trigger (HLT) are software triggers, running on large farms of standard computers and network devices. Within the ATLAS physics program more than 500 trigger signatures are defined. The HLT tests each signature on each L1-accepted event; the test outcome is recorded for later analysis. The HLT-Steering is responsible for this. It foremost ensures the independent test of each signature, guarantying u...

Upgrades of the ATLAS Muon Spectrometer with sMDT Chambers

CERN Document Server

Ferretti, Claudio; The ATLAS collaboration

2015-01-01

With half the drift-tube diameter of the Monitored Drift Tube (MDT) chambers of the ATLAS muon spectrometer and otherwise unchanged operating parameters, small-diameter Muon Drift Tube (sMDT) chambers provide an order of magnitude higher rate capability and can be installed in detector regions where MDT chambers do not fit. The chamber assembly time has been reduced by a factor of seven to one working day and the sense wire positioning accuracy improved by a factor of two to better than ten microns. Two sMDT chambers have been installed in ATLAS in 2014 to improve the momentum resolution in the barrel part of the spectrometer. The construction of additional twelve chambers covering the feet regions of the ATLAS detector has started. It will be followed by the replacement of the MDT chambers at the ends of the barrel inner layer by sMDTs improving the Performance at the high expected background rates and providing space for additional RPC trigger chambers.

Upgrades of the ATLAS Muon Spectrometer with sMDT Chambers

CERN Document Server

Ferretti, C

2016-01-01

With half the drift-tube diameter of the Monitored Drift Tube (MDT) chambers of the ATLAS muon spectrometer and otherwise unchanged operating parameters, small-diameter Muon Drift Tube (sMDT) chambers provide an order of magnitude higher rate capability and can be installed in detector regions where MDT chambers do not fit. The chamber assembly time has been reduced by a factor of seven to one working day and the sense wire positioning accuracy improved by a factor of two to better than ten microns. Two sMDT chambers have been installed in ATLAS in 2014 to improve the momentum resolution in the barrel part of the spectrometer. The construction of an additional twelve chambers covering the feet regions of the ATLAS detector has started. It will be followed by the replacement of the MDT chambers at the ends of the barrel inner layer by sMDTs improving the Performance at the high expected background rates and providing space for additional RPC trigger chambers.

Digital Filter Performance for the ATLAS Level-1 Calorimeter Trigger

CERN Document Server

Hadley, D R; The ATLAS collaboration

2010-01-01

The ATLAS Level-1 Calorimeter Trigger is a hardware-based system designed to identify high-pT jets, electron/photon and tau candidates, and to measure total and missing ET in the ATLAS Liquid Argon and Tile calorimeters. It is a pipelined processor system, with a new set of inputs being evaluated every 25ns. The overall trigger decision has a latency budget of 2µs, including all transmission delays. The calorimeter trigger uses about 7200 reduced granularity analogue signals, which are first digitized at the 40 MHz LHC bunch-crossing frequency, before being passed to a digital Finite Impulse Response (FIR) filter. Due to latency and chip real-estate constraints, only a simple 5-element filter with limited precision can be used. Nevertheless this filter achieves a significant reduction in noise, along with improving the bunch-crossing assignment and energy resolution for small signals. The context in which digital filters are used for the ATLAS Level-1 Calorimeter Trigger will be presented, before describing ...

Molecular gas in dusty high-redshift galaxies

Science.gov (United States)

Sharon, Chelsea Electra

2013-12-01

We present high-resolution observations of carbon monoxide (CO) emission lines for three high-redshift galaxies in order to determine their molecular gas and star formation properties. These galaxies (SMM J14011+0252, SMM J00266+1708, and SDSS J0901+1814) have large infrared luminosities, which imply high dust enshrouded star formation rates and substantial molecular gas masses. We observed these sources using the Robert C. Byrd Green Bank Telescope, the Karl G. Jansky Very Large Array, the Plateau de Bure Interferometer, and the Submillimeter Array in order to obtain measurements of multiple CO spectral lines, allowing us to determine the physical conditions of the molecular gas. Our high resolution and multi-line CO mapping of SMM J00266+1708 reveals that it is a pair of merging galaxies, whose two components have different gas excitation conditions and different gas kinematics. For SMM J14011+0252 (J14011), we find a near-unity CO(3--2)/CO(1--0) intensity ratio, consistent with a single phase (i.e., a single temperature and density) of molecular gas and different from the average population value for dusty galaxies selected at submillimeter wavelengths. Our radiative transfer modeling (using the large velocity gradient approximation) indicates that converting the CO line luminosity to molecular gas mass requires a Galactic (disk-like) scale factor rather than the typical conversion factor assumed for starbursts. Despite this choice of conversion factor, J14011 falls in the same region of star formation rate surface density and gas mass surface density (the Schmidt-Kennicutt relation) as other starburst galaxies. SDSS J0901+1814 (J0901) was initially selected as a star-forming galaxy at ultraviolet wavelengths, but also has a large infrared luminosity. We use the magnification provided by the strong gravitational lensing affecting this system to examine the spatial variation of the CO excitation within J0901. We find that the CO(3--2)/CO(1--0) line ratio is

A high-resolution atlas of the infrared spectrum of the Sun and the Earth atmosphere from space. Volume 3: Key to identification of solar features

Science.gov (United States)

Geller, Murray

1992-01-01

During the period April 29 through May 2, 1985, the Atmospheric Trace Molecule Spectroscopy (ATMOS) experiment was operated as part of the Spacelab-3 (SL-3) payload on the shuttle Challenger. The instrument, a Fourier transform spectrometer, recorded over 2000 infrared solar spectra from an altitude of 360 km. Although the majority of the spectra were taken through the limb of the Earth's atmosphere in order to better understand its composition, several hundred of the 'high-sun' spectra were completely free from telluric absorption. These high-sun spectra recorded from space are, at the present time, the only high-resolution infrared spectra ever taken of the Sun free from absorptions due to constituents in the Earth's atmosphere. Volumes 1 and 2 of this series provide a compilation of these spectra arranged in a format suitable for quick-look reference purposes and are the first record of the continuous high-resolution infrared spectrum of the Sun and the Earth's atmosphere from space. In the Table of Identifications, which constitutes the main body of this volume, each block of eight wavenumbers is given a separate heading and corresponds to a page of two panels in Volume 1 of this series. In addition, three separate blocks of data available from ATMOS from 622-630 cm(exp -1), 630-638 cm(exp -1) and 638-646 cm(exp -1), excluded from Volume 1 because of the low signal-to-noise ratio, have been included due to the certain identification of several OH and NH transitions. In the first column of the table, the corrected frequency is given. The second column identifies the molecular species. The third and fourth columns represent the assigned transition. The fifth column gives the depth of the molecular line in millimeters. Also included in this column is a notation to indicate whether the line is a blend or lies on the shoulder(s) of another line(s). The final column repeats a question mark if the line is unidentified.

A Combined On-Line Acoustic Flowmeter and Fluorocarbon Coolant Mixture Analyzer for The ATLAS Silicon Tracker

CERN Document Server

Bitadze, A.; Bates, R.; Battistin, M.; Berry, S.; Bonneau, P.; Botelho-Direito, J.; DiGirolamo, B.; Godlewski, J.; Perez-Rodriguez, E.; Zwalinski, L.; Bousson, N.; Hallewell, G.; Mathieu, M.; Rozanov, A.; Boyd, G.; Doubek, M.; Vacek, V.; Vitek, M.; Egorov, K.; Katunin, S.; McMahon, S.; Nagai, K.

2011-01-01

An upgrade to the ATLAS silicon tracker cooling control system may require a change from C3F8 (octafluoro-propane) to a blend containing 10-30% of C2F6 (hexafluoro-ethane) to reduce the evaporation temperature and better protect the silicon from cumulative radiation damage with increasing LHC luminosity. Central to this upgrade is a new acoustic instrument for the real-time measurement of the C3F8/C2F6 mixture ratio and flow. The instrument and its Supervisory, Control and Data Acquisition (SCADA) software are described in this paper. The instrument has demonstrated a resolution of 3.10-3 for C3F8/C2F6 mixtures with ~20%C2F6, and flow resolution of 2% of full scale for mass flows up to 30gs-1. In mixtures of widely-differing molecular weight (mw), higher mixture precision is possible: a sensitivity of < 5.10-4 to leaks of C3F8 into the ATLAS pixel detector nitrogen envelope (mw difference 160) has been seen. The instrument has many potential applications, including the analysis of mixtures of hydrocarbons,...

New results on diamond pixel sensors using ATLAS frontend electronics

International Nuclear Information System (INIS)

Keil, M.; Adam, W.; Berdermann, E.; Bergonzo, P.; Boer, W. de; Bogani, F.; Borchi, E.; Brambilla, A.; Bruzzi, M.; Colledani, C.; Conway, J.; D'Angelo, P.; Dabrowski, W.; Delpierre, P.; Dulinski, W.; Doroshenko, J.; Doucet, M.; Eijk, B. van; Fallou, A.; Fischer, P.; Fizzotti, F.; Kania, D.; Gan, K.K.; Grigoriev, E.; Hallewell, G.; Han, S.; Hartjes, F.; Hrubec, J.; Husson, D.; Kagan, H.; Kaplon, J.; Kass, R.; Knoepfle, K.T.; Koeth, T.; Krammer, M.; Logiudice, A.; Mac Lynne, L.; Manfredotti, C.; Meier, D.; Menichelli, D.; Meuser, S.; Mishina, M.; Moroni, L.; Noomen, J.; Oh, A.; Pan, L.S.; Pernicka, M.; Perera, L.; Riester, J.L.; Roe, S.; Rudge, A.; Russ, J.; Sala, S.; Sampietro, M.; Schnetzer, S.; Sciortino, S.; Stelzer, H.; Stone, R.; Suter, B.; Trischuk, W.; Tromson, D.; Vittone, E.; Weilhammer, P.; Wermes, N.; Wetstein, M.; Zeuner, W.; Zoeller, M.

2003-01-01

Diamond is a promising sensor material for future collider experiments due to its radiation hardness. Diamond pixel sensors have been bump bonded to an ATLAS pixel readout chip using PbSn solder bumps. Single chip devices have been characterised by lab measurements and in a high-energy pion beam at CERN. Results on charge collection, spatial resolution, efficiency and the charge carrier lifetime are presented

New results on diamond pixel sensors using ATLAS frontend electronics

CERN Document Server

Keil, Markus; Berdermann, E; Bergonzo, P; de Boer, Wim; Bogani, F; Borchi, E; Brambilla, A; Bruzzi, Mara; Colledani, C; Conway, J; D'Angelo, P; Dabrowski, W; Delpierre, P A; Dulinski, W

2003-01-01

Diamond is a promising sensor material for future collider experiments due to its radiation hardness. Diamond pixel sensors have been bump bonded to an ATLAS pixel readout chip using PbSn solder bumps. Single chip devices have been characterised by lab measurements and in a high-energy pion beam at CERN. Results on charge collection, spatial resolution, efficiency and the charge carrier lifetime are presented.

New results on diamond pixel sensors using ATLAS frontend electronics

Energy Technology Data Exchange (ETDEWEB)

Keil, M. E-mail: markus.keil@cern.ch; Adam, W.; Berdermann, E.; Bergonzo, P.; Boer, W. de; Bogani, F.; Borchi, E.; Brambilla, A.; Bruzzi, M.; Colledani, C.; Conway, J.; D' Angelo, P.; Dabrowski, W.; Delpierre, P.; Dulinski, W.; Doroshenko, J.; Doucet, M.; Eijk, B. van; Fallou, A.; Fischer, P.; Fizzotti, F.; Kania, D.; Gan, K.K.; Grigoriev, E.; Hallewell, G.; Han, S.; Hartjes, F.; Hrubec, J.; Husson, D.; Kagan, H.; Kaplon, J.; Kass, R.; Knoepfle, K.T.; Koeth, T.; Krammer, M.; Logiudice, A.; Mac Lynne, L.; Manfredotti, C.; Meier, D.; Menichelli, D.; Meuser, S.; Mishina, M.; Moroni, L.; Noomen, J.; Oh, A.; Pan, L.S.; Pernicka, M.; Perera, L.; Riester, J.L.; Roe, S.; Rudge, A.; Russ, J.; Sala, S.; Sampietro, M.; Schnetzer, S.; Sciortino, S.; Stelzer, H.; Stone, R.; Suter, B.; Trischuk, W.; Tromson, D.; Vittone, E.; Weilhammer, P.; Wermes, N.; Wetstein, M.; Zeuner, W.; Zoeller, M

2003-03-21

Diamond is a promising sensor material for future collider experiments due to its radiation hardness. Diamond pixel sensors have been bump bonded to an ATLAS pixel readout chip using PbSn solder bumps. Single chip devices have been characterised by lab measurements and in a high-energy pion beam at CERN. Results on charge collection, spatial resolution, efficiency and the charge carrier lifetime are presented.

New results on diamond pixel sensors using ATLAS frontend electronics

Science.gov (United States)

Keil, M.; Adam, W.; Berdermann, E.; Bergonzo, P.; de Boer, W.; Bogani, F.; Borchi, E.; Brambilla, A.; Bruzzi, M.; Colledani, C.; Conway, J.; D'Angelo, P.; Dabrowski, W.; Delpierre, P.; Dulinski, W.; Doroshenko, J.; Doucet, M.; van Eijk, B.; Fallou, A.; Fischer, P.; Fizzotti, F.; Kania, D.; Gan, K. K.; Grigoriev, E.; Hallewell, G.; Han, S.; Hartjes, F.; Hrubec, J.; Husson, D.; Kagan, H.; Kaplon, J.; Kass, R.; Knöpfle, K. T.; Koeth, T.; Krammer, M.; Logiudice, A.; mac Lynne, L.; Manfredotti, C.; Meier, D.; Menichelli, D.; Meuser, S.; Mishina, M.; Moroni, L.; Noomen, J.; Oh, A.; Pan, L. S.; Pernicka, M.; Perera, L.; Riester, J. L.; Roe, S.; Rudge, A.; Russ, J.; Sala, S.; Sampietro, M.; Schnetzer, S.; Sciortino, S.; Stelzer, H.; Stone, R.; Suter, B.; Trischuk, W.; Tromson, D.; Vittone, E.; Weilhammer, P.; Wermes, N.; Wetstein, M.; Zeuner, W.; Zoeller, M.

2003-03-01

Diamond is a promising sensor material for future collider experiments due to its radiation hardness. Diamond pixel sensors have been bump bonded to an ATLAS pixel readout chip using PbSn solder bumps. Single chip devices have been characterised by lab measurements and in a high-energy pion beam at CERN. Results on charge collection, spatial resolution, efficiency and the charge carrier lifetime are presented.

ATLAS Jet Trigger Update for the LHC Run II

CERN Document Server

Prince, Sebastien; The ATLAS collaboration

2015-01-01

After the current shutdown, the LHC is about to resume operation for a new data-taking period, when it will operate with increased luminosity, event rate and centre of mass energy. The new conditions will impose more demanding constraints on the ATLAS online trigger reconstruction and selection system. To cope with such increased constraints, the ATLAS High Level Trigger, placed after a first hardware-based Level-1 trigger, has been redesigned by merging two previously separated software-based processing levels. In the new joint processing level, the algorithms run in the same computing nodes, thus sharing resources, minimizing the data transfer from the detector buffers and increasing the algorithm flexibility. The Jet trigger software selects events containing high transverse momentum hadronic jets. It needs optimal jet energy resolution to help rejecting an overwhelming background while retaining good efficiency for interesting jets. In particular, this requires the CPU-intensive reconstruction of tridimen...

Imaging collagen type I fibrillogenesis with high spatiotemporal resolution

International Nuclear Information System (INIS)

Stamov, Dimitar R; Stock, Erik; Franz, Clemens M; Jähnke, Torsten; Haschke, Heiko

2015-01-01

Fibrillar collagens, such as collagen type I, belong to the most abundant extracellular matrix proteins and they have received much attention over the last five decades due to their large interactome, complex hierarchical structure and high mechanical stability. Nevertheless, the collagen self-assembly process is still incompletely understood. Determining the real-time kinetics of collagen type I formation is therefore pivotal for better understanding of collagen type I structure and function, but visualising the dynamic self-assembly process of collagen I on the molecular scale requires imaging techniques offering high spatiotemporal resolution. Fast and high-speed scanning atomic force microscopes (AFM) provide the means to study such processes on the timescale of seconds under near-physiological conditions. In this study we have applied fast AFM tip scanning to study the assembly kinetics of fibrillar collagen type I nanomatrices with a temporal resolution reaching eight seconds for a frame size of 500 nm. By modifying the buffer composition and pH value, the kinetics of collagen fibrillogenesis can be adjusted for optimal analysis by fast AFM scanning. We furthermore show that amplitude-modulation imaging can be successfully applied to extract additional structural information from collagen samples even at high scan rates. Fast AFM scanning with controlled amplitude modulation therefore provides a versatile platform for studying dynamic collagen self-assembly processes at high resolution. - Highlights: • Continuous non-invasive time-lapse investigation of collagen I fibrillogenesis in situ. • Imaging of collagen I self-assembly with high spatiotemporal resolution. • Application of setpoint modulation to study the hierarchical structure of collagen I. • Observing real-time formation of the D-banding pattern in collagen I

Imaging collagen type I fibrillogenesis with high spatiotemporal resolution

Energy Technology Data Exchange (ETDEWEB)

Stamov, Dimitar R, E-mail: stamov@jpk.com [JPK Instruments AG, Bouchéstrasse 12, 12435 Berlin (Germany); Stock, Erik [JPK Instruments AG, Bouchéstrasse 12, 12435 Berlin (Germany); Franz, Clemens M [DFG-Center for Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), Wolfgang-Gaede-Strasse 1a, 76131 Karlsruhe (Germany); Jähnke, Torsten; Haschke, Heiko [JPK Instruments AG, Bouchéstrasse 12, 12435 Berlin (Germany)

2015-02-15

Fibrillar collagens, such as collagen type I, belong to the most abundant extracellular matrix proteins and they have received much attention over the last five decades due to their large interactome, complex hierarchical structure and high mechanical stability. Nevertheless, the collagen self-assembly process is still incompletely understood. Determining the real-time kinetics of collagen type I formation is therefore pivotal for better understanding of collagen type I structure and function, but visualising the dynamic self-assembly process of collagen I on the molecular scale requires imaging techniques offering high spatiotemporal resolution. Fast and high-speed scanning atomic force microscopes (AFM) provide the means to study such processes on the timescale of seconds under near-physiological conditions. In this study we have applied fast AFM tip scanning to study the assembly kinetics of fibrillar collagen type I nanomatrices with a temporal resolution reaching eight seconds for a frame size of 500 nm. By modifying the buffer composition and pH value, the kinetics of collagen fibrillogenesis can be adjusted for optimal analysis by fast AFM scanning. We furthermore show that amplitude-modulation imaging can be successfully applied to extract additional structural information from collagen samples even at high scan rates. Fast AFM scanning with controlled amplitude modulation therefore provides a versatile platform for studying dynamic collagen self-assembly processes at high resolution. - Highlights: • Continuous non-invasive time-lapse investigation of collagen I fibrillogenesis in situ. • Imaging of collagen I self-assembly with high spatiotemporal resolution. • Application of setpoint modulation to study the hierarchical structure of collagen I. • Observing real-time formation of the D-banding pattern in collagen I.

Failure Atlas for Rolling Bearings in Wind Turbines

Energy Technology Data Exchange (ETDEWEB)

Tallian, T. E.

2006-01-01

systems used, and by several indexes. The present Atlas is intended as a supplement to the book. It has the same structure but contains only Plate pages, arranged in chapters, each with a chapter heading page giving a short definition of the failure mode illustrated. Each Plate page is self contained, with images, bearing and application data, and descriptions of the failure mode, the images and the suspected causes. Images are provided in two resolutions: The text page includes 6 by 9 cm images. In addition, high resolution image files are attached, to be retrieved by clicking on their 'push pin' icon. While the material in the present Atlas is self-contained, it is nonetheless a supplement to the book and the complete interpretation of the terse image descriptions and of the system underlying the failure code presupposes familiarity with the book. Since this Atlas is a supplement to the book, its chapter numbering follows that of the book. Not all failure modes covered in the book have been found among the observed wind turbines. For that reason, and because of the omission of introductory matter, the chapter numbers in this Atlas are not a continuous sequence.

Analysis of the epidemiological dynamics during the 1982-1983 epidemic of foot-and-mouth disease in Denmark based on molecular high-resolution strain identification

DEFF Research Database (Denmark)

Christensen, Laurids Siig; Normann, Preben; Thykier-Nielsen, Søren

2005-01-01

An epidemic of foot-and-mouth disease (FMD) causing a total of 23 cases in 1982-1983, primarily on the island of Funen, Denmark, was subjected to molecular epidemiological investigations. In an attempt to exploit the quasi-species nature of foot-and-mouth disease virus strains for molecular high......-resolution strain identification in order to analyse the dynamics of this epidemic, full-length VP1 coding regions were sequenced for 17 isolates collected at different farms during the epidemic. The sequence information together with epidemiological information gathered during the epidemic suggests......, and the prerequisite of co- or superinfection of animals with variant strains in turn implies that they have a common source or epidemiologically related sources originating from an area with endemic FMD....

Encoding atlases by randomized classification forests for efficient multi-atlas label propagation.

Science.gov (United States)

Zikic, D; Glocker, B; Criminisi, A

2014-12-01

We propose a method for multi-atlas label propagation (MALP) based on encoding the individual atlases by randomized classification forests. Most current approaches perform a non-linear registration between all atlases and the target image, followed by a sophisticated fusion scheme. While these approaches can achieve high accuracy, in general they do so at high computational cost. This might negatively affect the scalability to large databases and experimentation. To tackle this issue, we propose to use a small and deep classification forest to encode each atlas individually in reference to an aligned probabilistic atlas, resulting in an Atlas Forest (AF). Our classifier-based encoding differs from current MALP approaches, which represent each point in the atlas either directly as a single image/label value pair, or by a set of corresponding patches. At test time, each AF produces one probabilistic label estimate, and their fusion is done by averaging. Our scheme performs only one registration per target image, achieves good results with a simple fusion scheme, and allows for efficient experimentation. In contrast to standard forest schemes, in which each tree would be trained on all atlases, our approach retains the advantages of the standard MALP framework. The target-specific selection of atlases remains possible, and incorporation of new scans is straightforward without retraining. The evaluation on four different databases shows accuracy within the range of the state of the art at a significantly lower running time. Copyright © 2014 Elsevier B.V. All rights reserved.

The online muon identification of the ATLAS experiment at the LHC

CERN Document Server

Bernard, C; The ATLAS collaboration

2014-01-01

Identifying muons in the busy LHC environment is an important challenge for the ATLAS detector. This paper gives an overview of the ATLAS three-level muon trigger system, summarizing the online performance. In particular it discusses processing time and trigger rates as well as efficiency, resolution and other general performance figures.

Implementation of the ATLAS trigger within the ATLAS Multi­Threaded Software Framework AthenaMT

CERN Document Server

Wynne, Benjamin; The ATLAS collaboration

2016-01-01

We present an implementation of the ATLAS High Level Trigger that provides parallel execution of trigger algorithms within the ATLAS multi­threaded software framework, AthenaMT. This development will enable the ATLAS High Level Trigger to meet future challenges due to the evolution of computing hardware and upgrades of the Large Hadron Collider, LHC, and ATLAS Detector. During the LHC data­taking period starting in 2021, luminosity will reach up to three times the original design value. Luminosity will increase further, to up to 7.5 times the design value, in 2026 following LHC and ATLAS upgrades. This includes an upgrade of the ATLAS trigger architecture that will result in an increase in the High Level Trigger input rate by a factor of 4 to 10 compared to the current maximum rate of 100 kHz. The current ATLAS multiprocess framework, AthenaMP, manages a number of processes that process events independently, executing algorithms sequentially in each process. AthenaMT will provide a fully multi­threaded env...

A Highly Selective First-Level Muon Trigger With MDT Chamber Data for ATLAS at HL-LHC

CERN Document Server

Nowak, Sebastian; The ATLAS collaboration

2015-01-01

Highly selective triggers are essential for the physics programme of the ATLAS experiment at HL-LHC where the instantaneous luminosity will be about an order of magnitude larger than the LHC design luminosity. The Level-1 muon trigger rate is dominated by low momentum muons below the nominal trigger threshold due to the limited momentum resolution of the Resistive Plate and Thin Gap trigger chambers. The resulting high trigger rates at HL-LHC can be sufficient reduced by using the data of the precision Muon Drift Tube chambers for the trigger decision. This requires the implementation of a fast MDT read-out chain and of a fast MDT track reconstruction algorithm with a latency of at most 6~$\\mu$s. A hardware demonstrator of the fast read-out chain has been successfully tested at the high HL-LHC background rates at the CERN Gamma Irradiation Facility. The fast track reconstruction algorithm has been implemented on a fas trigger processor.

High-resolution molecular line observations of active galaxies

Science.gov (United States)

García-Burillo, S.; Combes, F.; Usero, A.; Graciá-Carpio, J.

2008-10-01

The study of the content, distribution and kinematics of interstellar gas is a key to understand the origin and maintenance of both starburst and nuclear (AGN) activity in galaxies. The processes involved in AGN fueling encompass a wide range of scales, both spatial and temporal, which have to be studied. Probing the gas flow from the outer disk down to the central engine of an AGN host, requires the use of specific tracers of the interstellar medium adapted to follow the change of phase of the gas as a function of radius. Current mm-interferometers can provide a sharp view of the distribution and kinematics of molecular gas in the circumnuclear disks of galaxies through extensive CO line mapping. As such, CO maps are an essential tool to study AGN feeding mechanisms in the local universe. This is the scientific driver of the NUclei of GAlaxies (NUGA) survey, whose latest results are here reviewed. On the other hand, the use of specific molecular tracers of the dense gas phase can probe the feedback influence of activity on the chemistry and energy balance/redistribution in the interstellar medium of nearby galaxies. Millimeter interferometers are able to unveil the strong chemical differentiation present in the molecular gas disks of nearby starbursts and AGNs. Nearby active galaxies can be used as local templates to address the study of more distant galaxies where both star formation and AGN activity are deeply embedded.

High resolution mapping of urban areas using SPOT-5 images and ancillary data

Directory of Open Access Journals (Sweden)

Elif Sertel

2015-08-01

Full Text Available This research aims to propose new rule sets to be used for object based classification of SPOT-5 images to accurately create detailed urban land cover/use maps. In addition to SPOT-5 satellite images, Normalized Difference Vegetation Index (NDVI and Normalized Difference Water Index (NDWI maps, cadastral maps, Openstreet maps, road maps and Land Cover maps, were also integrated into classification to increase the accuracy of resulting maps. Gaziantep city, one of the highly populated cities of Turkey with different landscape patterns was selected as the study area. Different rule sets involving spectral, spatial and geometric characteristics were developed to be used for object based classification of 2.5 m resolution Spot-5 satellite images to automatically create urban map of the region. Twenty different land cover/use classes obtained from European Urban Atlas project were applied and an automatic classification approach was suggested for high resolution urban map creation and updating. Integration of different types of data into the classification decision tree increased the performance and accuracy of the suggested approach. The accuracy assessment results illustrated that with the usage of newly proposed rule set algorithms in object-based classification, urban areas represented with seventeen different sub-classes could be mapped with 94 % or higher overall accuracy.

Replacement of benthic communities in two Neoproterozoic-Cambrian subtropical-to-temperate rift basins, High Atlas and Anti-Atlas, Morocco

Science.gov (United States)

Clausen, Sébastien; Álvaro, J. Javier; Zamora, Samuel

2014-10-01

The ‘Cambrian explosion’ is often introduced as a major shift in benthic marine communities with a coeval decline of microbial consortia related to the diversification of metazoans and development of bioturbation (‘Agronomic Revolution’). Successive community replacements have been reported along with ecosystem diversification and increase in guild complexity from Neoproterozoic to Cambrian times. This process is recorded worldwide but with regional diachroneities, some of them directly controlled by the geodynamic conditions of sedimentary basins. The southern High Atlas and Anti-Atlas of Morocco record development of two rifts, Tonian (?) - early Cryogenian and latest Ediacarian-Cambrian in age, separated by the onset of the Pan-African Orogeny. This tectonically controlled, regional geodynamic change played a primary control on pattern and timing of benthic ecosystem replacements. Benthic communities include microbial consortia, archaeocyathan-thromboid reefal complexes, chancelloriid-echinoderm-sponge meadows, and deeper offshore echinoderm-dominated communities. Microbial consortia appeared in deeper parts of the Tonian (?) - early Cryogenian fluvio-deltaic progradational rift sequences, lacustrine environments of the Ediacaran Volcanic Atlasic Chain (Ouarzazate Supergroup) and the Ediacaran-Cambrian boundary interval, characterized by the peritidal-dominated Tifnout Member (Adoudou Formation). They persisted and were largely significant until Cambrian Age 3, as previous restricted marine conditions precluded the immigration of shelly metazoans in the relatively shallow epeiric parts of the Cambrian Atlas Rift. Successive Cambrian benthic communities were replaced as a result of distinct hydrodynamic and substrate conditions, which allow identification of biotic (e.g., antagonistic relationships between microbial consortia and echinoderms, and taphonomic feedback patterns in chancelloriid-echinoderm-sponge meadows) and abiotic (e.g., rifting

Frameworks to monitor and predict rates and resource usage in the ATLAS High Level Trigger

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00219969; The ATLAS collaboration

2017-01-01

The ATLAS High Level Trigger Farm consists of around 40,000 CPU cores which filter events at an input rate of up to 100 kHz. A costing framework is built into the high level trigger thus enabling detailed monitoring of the system and allowing for data-driven predictions to be made utilising specialist datasets. An overview is presented in to how ATLAS collects in-situ monitoring data on CPU usage during the trigger execution, and how these data are processed to yield both low level monitoring of individual selection-algorithms and high level data on the overall performance of the farm. For development and prediction purposes, ATLAS uses a special ‘Enhanced Bias’ event selection. This mechanism is explained along with how it is used to profile expected resource usage and output event rate of new physics selections, before they are executed on the actual high level trigger farm.

High-Resolution Mass Spectrometry and Molecular Characterization of Aqueous Photochemistry Products of Common Types of Secondary Organic Aerosols

Energy Technology Data Exchange (ETDEWEB)

Romonosky, Dian E.; Laskin, Alexander; Laskin, Julia; Nizkorodov, Sergey

2015-03-19

A significant fraction of atmospheric organic compounds is predominantly found in condensed phases, such as aerosol particles and cloud droplets. Many of these compounds are photolabile and can degrade through direct photolysis or indirect photooxidation processes on time scales that are comparable to the typical lifetimes of aqueous droplets (hours) and particles (days). This paper presents a systematic investigation of the molecular level composition and the extent of aqueous photochemical processing in different types of secondary organic aerosol (SOA) from biogenic and anthropogenic precursors including α-pinene, β-pinene, β-myrcene, d- limonene, α-humulene, 1,3,5-trimethylbenzene, and guaiacol, oxidized by ozone (to simulate a remote atmosphere) or by OH in the presence of NOx (to simulate an urban atmosphere). Chamber- and flow tube-generated SOA samples were collected, extracted in a methanol/water solution, and photolyzed for 1 h under identical irradiation conditions. In these experiments, the irradiation was equivalent to about 3-8 h of exposure to the sun in its zenith. The molecular level composition of the dissolved SOA was probed before and after photolysis with direct-infusion electrospray ionization high-resolution mass spectrometry (ESI-HR-MS). The mass spectra of unphotolyzed SOA generated by ozone oxidation of monoterpenes showed qualitatively similar features, and contained largely overlapping subsets of identified compounds. The mass spectra of OH/NOx generated SOA had more unique visual appearance, and indicated a lower extent of products overlap. Furthermore, the fraction of nitrogen containing species (organonitrates and nitroaromatics) was highly sensitive to the SOA precursor. These observations suggest that attribution of high-resolution mass spectra in field SOA samples to specific SOA precursors should be more straightforward under OH/NOx oxidation conditions compared to the ozone driven oxidation. Comparison of the SOA constituents

FTK: The hardware Fast TracKer of the ATLAS experiment at CERN

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00525014; The ATLAS collaboration

2017-01-01

In the ever increasing pile-up of the Large Hadron Collider environment the trigger systems of the experiments have to be exceedingly sophisticated and fast at the same time in order to increase the rate of relevant physics processes with respect to background processes. The Fast TracKer (FTK) is a track finding implementation at hardware level that is designed to deliver full-scan tracks with $p_{T}$ above 1GeV to the ATLAS trigger system for every L1 accept (at a maximum rate of 100kHz). To accomplish this, FTK is a highly parallel system which is currently under installation in ATLAS. It will first provide the trigger system with tracks in the central region of the ATLAS detector, and next year it is expected that it will cover the whole detector. The system is based on pattern matching between hits coming from the silicon trackers of the ATLAS detector and 1 billion simulated patterns stored in specially designed ASIC chips (Associative Memory – AM06). In a first stage, coarse resolution hits are matche...

High resolution VUV facility at INDUS-1

International Nuclear Information System (INIS)

Krishnamurty, G.; Saraswathy, P.; Rao, P.M.R.; Mishra, A.P.; Kartha, V.B.

1993-01-01

Synchrotron radiation (SR) generated in the electron storage rings is an unique source for the study of atomic and molecular spectroscopy especially in the vacuum ultra violet region. Realizing the potential of this light source, efforts are in progress to develop a beamline facility at INDUS-1 to carry out high resolution atomic and molecular spectroscopy. This beam line consists of a fore-optic which is a combination of three cylindrical mirrors. The mirrors are so chosen that SR beam having a 60 mrad (horizontal) x 6 mrad (vertical) divergence is focussed onto a slit of a 6.65 metre off-plane spectrometer in Eagle Mount equipped with horizontal slit and vertical dispersion. The design of the various components of the beam line is completed. It is decided to build the spectrometer as per the requirements of the user community. Details of the various aspects of the beam line will be presented. (author). 3 figs

High-Resolution Spore Coat Architecture and Assembly of Bacillus Spores

Energy Technology Data Exchange (ETDEWEB)

Malkin, A J; Elhadj, S; Plomp, M

2011-03-14

Elucidating the molecular architecture of bacterial and cellular surfaces and its structural dynamics is essential to understanding mechanisms of pathogenesis, immune response, physicochemical interactions, environmental resistance, and provide the means for identifying spore formulation and processing attributes. I will discuss the application of in vitro atomic force microscopy (AFM) for studies of high-resolution coat architecture and assembly of several Bacillus spore species. We have demonstrated that bacterial spore coat structures are phylogenetically and growth medium determined. We have proposed that strikingly different species-dependent coat structures of bacterial spore species are a consequence of sporulation media-dependent nucleation and crystallization mechanisms that regulate the assembly of the outer spore coat. Spore coat layers were found to exhibit screw dislocations and two-dimensional nuclei typically observed on inorganic and macromolecular crystals. This presents the first case of non-mineral crystal growth patterns being revealed for a biological organism, which provides an unexpected example of nature exploiting fundamental materials science mechanisms for the morphogenetic control of biological ultrastructures. We have discovered and validated, distinctive formulation-specific high-resolution structural spore coat and dimensional signatures of B. anthracis spores (Sterne strain) grown in different formulation condition. We further demonstrated that measurement of the dimensional characteristics of B. anthracis spores provides formulation classification and sample matching with high sensitivity and specificity. I will present data on the development of an AFM-based immunolabeling technique for the proteomic mapping of macromolecular structures on the B. anthracis surfaces. These studies demonstrate that AFM can probe microbial surface architecture, environmental dynamics and the life cycle of bacterial and cellular systems at near-molecular

The INIA19 template and NeuroMaps atlas for primate brain image parcellation and spatial normalization

Directory of Open Access Journals (Sweden)

Torsten eRohlfing

2012-12-01

Full Text Available The INIA19 is a new, high-quality template for imaging-based studies of non-human primate brains created from high-resolution T1-weighted magnetic resonance (MR images of 19 rhesus macaque (Macaca mulatta animals. Combined with the comprehensive cortical and subcortical label map of the NeuroMaps atlas, the INIA19 is equally suitable for studies requiring both spatial normalization and atlas label propagation. Population-averaged template images are provided for both the brain and the whole head, to allow alignment of the atlas with both skull-stripped and unstripped data, and thus to facilitate its use for skull stripping of new images. This article describes the construction of the template using freely-available software tools, as well as the template itself, which is being made available to the scientific community (http://nitrc.org/projects/inia19/.

Simulation of the ATLAS New Small Wheel (NSW) System

CERN Document Server

Maekawa, Koki; The ATLAS collaboration

2017-01-01

The instantaneous luminosity of the Large Hadron Collider (LHC) at CERN will be increased up to a factor of five with respect to the present design value by undergoing an extensive upgrade program over the coming decade. In order to benefit from the expected high luminosity performance, the first station of the ATLAS muon end-cap Small Wheel system will need to be replaced by a New Small Wheel (NSW) detector during the second long LHC shutdown. The NSW will have to operate in a high background radiation region, while reconstructing muon tracks with high precision as well as furnishing information for the Level-1 trigger. The NSW simulation has been developed to model the actual response of the detector and its fast electronics. The simulation has been used to get a deep understanding of the trigger logic timing, the tracking-segment finding efficiency, track rate and track-pointing resolutions at the high background hit rate expected during the next phases of ATLAS at LHC. The results of these performance stu...

Gold finger formation studied by high-resolution mass spectrometry and in silico methods

NARCIS (Netherlands)

Laskay, Ü.A.; Garino, C.; Tsybin, Y.O.; Salassa, L.; Casini, A.

2015-01-01

High-resolution mass spectrometry and quantum mechanics/molecular mechanics studies were employed for characterizing the formation of two gold finger (GF) domains from the reaction of zinc fingers (ZF) with gold complexes. The influence of both the gold oxidation state and the ZF coordination sphere

FIIND: Ferret Interactive Integrated Neurodevelopment Atlas

Directory of Open Access Journals (Sweden)

Roberto Toro

2018-03-01

Full Text Available The first days after birth in ferrets provide a privileged view of the development of a complex mammalian brain. Unlike mice, ferrets develop a rich pattern of deep neocortical folds and cortico- cortical connections. Unlike humans and other primates, whose brains are well differentiated and folded at birth, ferrets are born with a very immature and completely smooth neocortex: folds, neocortical regionalisation and cortico-cortical connectivity develop in ferrets during the first postnatal days. After a period of fast neocortical expansion, during which brain volume increases by up to a factor of 4 in 2 weeks, the ferret brain reaches its adult volume at about 6 weeks of age. Ferrets could thus become a major animal model to investigate the neurobiological correlates of the phenomena observed in human neuroimaging. Many of these phenomena, such as the relationship between brain folding, cortico-cortical connectivity and neocortical regionalisation cannot be investigated in mice, but could be investigated in ferrets. Our aim is to provide the research community with a detailed description of the development of a complex brain, necessary to better understand the nature of human neuroimaging data, create models of brain development, or analyse the relationship between multiple spatial scales. We have already started a project to constitute an open, collaborative atlas of ferret brain development, integrating multi-modal and multi-scale data. We have acquired data for 28 ferrets (4 animals per time point from P0 to adults, using high-resolution MRI and diffusion tensor imaging (DTI. We have developed an open-source pipeline to segment and produce – online – 3D reconstructions of brain MRI data. We propose to process the brains of 16 of our specimens (from P0 to P16 using high-throughput 3D histology, staining for cytoarchitectonic landmarks, neuronal progenitors and neurogenesis. This would allow us to relate the MRI data that we have already

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures

International Nuclear Information System (INIS)

McGreevy, Ryan; Singharoy, Abhishek; Li, Qufei; Zhang, Jingfen; Xu, Dong; Perozo, Eduardo; Schulten, Klaus

2014-01-01

A new real-space refinement method for low-resolution X-ray crystallography is presented. The method is based on the molecular dynamics flexible fitting protocol targeted at addressing large-scale deformations of the search model to achieve refinement with minimal manual intervention. An explanation of the method is provided, augmented by results from the refinement of both synthetic and experimental low-resolution data, including an independent electrophysiological verification of the xMDFF-refined crystal structure of a voltage-sensor protein. X-ray crystallography remains the most dominant method for solving atomic structures. However, for relatively large systems, the availability of only medium-to-low-resolution diffraction data often limits the determination of all-atom details. A new molecular dynamics flexible fitting (MDFF)-based approach, xMDFF, for determining structures from such low-resolution crystallographic data is reported. xMDFF employs a real-space refinement scheme that flexibly fits atomic models into an iteratively updating electron-density map. It addresses significant large-scale deformations of the initial model to fit the low-resolution density, as tested with synthetic low-resolution maps of d-ribose-binding protein. xMDFF has been successfully applied to re-refine six low-resolution protein structures of varying sizes that had already been submitted to the Protein Data Bank. Finally, via systematic refinement of a series of data from 3.6 to 7 Å resolution, xMDFF refinements together with electrophysiology experiments were used to validate the first all-atom structure of the voltage-sensing protein Ci-VSP

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures

Energy Technology Data Exchange (ETDEWEB)

McGreevy, Ryan; Singharoy, Abhishek [University of Illinois at Urbana-Champaign, Urbana, IL 61801 (United States); Li, Qufei [The University of Chicago, Chicago, IL 60637 (United States); Zhang, Jingfen; Xu, Dong [University of Missouri, Columbia, MO 65211 (United States); Perozo, Eduardo [The University of Chicago, Chicago, IL 60637 (United States); Schulten, Klaus, E-mail: kschulte@ks.uiuc.edu [University of Illinois at Urbana-Champaign, Urbana, IL 61801 (United States); University of Illinois at Urbana-Champaign, Urbana, IL 61801 (United States)

2014-09-01

A new real-space refinement method for low-resolution X-ray crystallography is presented. The method is based on the molecular dynamics flexible fitting protocol targeted at addressing large-scale deformations of the search model to achieve refinement with minimal manual intervention. An explanation of the method is provided, augmented by results from the refinement of both synthetic and experimental low-resolution data, including an independent electrophysiological verification of the xMDFF-refined crystal structure of a voltage-sensor protein. X-ray crystallography remains the most dominant method for solving atomic structures. However, for relatively large systems, the availability of only medium-to-low-resolution diffraction data often limits the determination of all-atom details. A new molecular dynamics flexible fitting (MDFF)-based approach, xMDFF, for determining structures from such low-resolution crystallographic data is reported. xMDFF employs a real-space refinement scheme that flexibly fits atomic models into an iteratively updating electron-density map. It addresses significant large-scale deformations of the initial model to fit the low-resolution density, as tested with synthetic low-resolution maps of d-ribose-binding protein. xMDFF has been successfully applied to re-refine six low-resolution protein structures of varying sizes that had already been submitted to the Protein Data Bank. Finally, via systematic refinement of a series of data from 3.6 to 7 Å resolution, xMDFF refinements together with electrophysiology experiments were used to validate the first all-atom structure of the voltage-sensing protein Ci-VSP.

Nitro Stretch Probing of a Single Molecular Layer to Monitor Shock Compression with Picosecond Time-Resolution

Science.gov (United States)

Berg, Christopher; Lagutchev, Alexei; Fu, Yuanxi; Dlott, Dana

2011-06-01

To obtain maximum possible temporal resolution, laser-driven shock compression of a molecular monolayer was studied using vibrational spectroscopy. The stretching transitions of nitro groups bound to aromatic rings was monitored using a nonlinear coherent infrared spectroscopy termed sum-frequency generation, which produced high-quality signals from this very thin layer. To overcome the shock opacity problem, a novel polymer overcoat method allowed us to make the observation window (witness plate) a few micrometers thick. The high signal-to-noise ratios (>100:1) obtained via this spectroscopy allowed us to study detailed behavior of the shocked molecules. To help interpret these vibrational spectra, additional spectra were obtained under conditions of static pressures up to 10 GPa and static temperatures up to 1000 C. Consequently, this experiment represents a significant step in resolving molecular dynamics during shock compression and unloading with both high spatial and temporal resolution. Supported by the Stewardship Sciences Academic Alliance Program from the Carnegie-DOE Alliance Center under grant number DOE CIW 4-3253-13 and the US Air Force Office of Scientific Research under award number FAA9550-09-1-0163.

The ATLAS Data Acquisition and High Level Trigger system

International Nuclear Information System (INIS)

2016-01-01

This paper describes the data acquisition and high level trigger system of the ATLAS experiment at the Large Hadron Collider at CERN, as deployed during Run 1. Data flow as well as control, configuration and monitoring aspects are addressed. An overview of the functionality of the system and of its performance is presented and design choices are discussed.

CP violation in ATLAS

International Nuclear Information System (INIS)

Saavedra, A.F.

1995-01-01

Full text: In the standard model CP violation is generated by a non trivial complex phase in the CKM matrix. The Standard Model does not predict the elements of the CKM matrix, they need to be experimentally measured. This will show if all the CP violation phenomena can be accounted by the complex phase or there are other contributing mechanisms which lie beyond the scope of Standard Model. It is of interest to overconstraint the so called unitary triangle by measuring each angle (α, β and γ) from the CP asymmetry that occurs in different decay modes. During the initial low luminosity period of the LHC a large effort will be concentrated in studying B physics, especially CP violation in the B 0 - B-bar 0 system, with the ATLAS detector. The features of the detector which are important for CP studies are: sharp trigger from the muon spectrometer (muons will be identify down to p T ≅ 5GeV, be able to distinguish electrons from hadrons (down to p T ≅ 1 GeV) with the Straw Tracker and Transition detector and high resolution of tracks, secondary vertices with the Semiconductor Tracker (resolution of 10-90 μm. For some decays modes ATLAS is expected to obtain larger sample of events than the B-factories that are being proposed. It has been calculated that the systematic error σ sin (2 α) = 0.06 and σ sin ( 2 β) = 0.027 which is comparable with other future experiments

High-resolution images of the Orion molecular ridge in the CS J = 2-1 transition

International Nuclear Information System (INIS)

Mundy, L.G.; Masson, C.R.; Scoville, N.Z.; Cornwell, T.J.; Baath, L.B.

1988-01-01

A maximum entropy algorithm is used to combine various data in order to obtain 7.5-arcsec resolution images of the CS J = 2-1 emission from a 3.5-arcmin section of the Orion molecular ridge. This section of the ridge is found to contain four condensations with nearly thermal CS peak brightness temperatures, dimensions from 0.03-0.11 pc, and virial masses from 30-80 solar masses. About 70 percent of the total mass within the 3-arcmin region is shown to be contained in these condensations. It is suggested that the condensations and the included section of the ridge form a gravitationally bound subunit of the Orion cloud. 27 references

3D high spectral and spatial resolution imaging of ex vivo mouse brain

Energy Technology Data Exchange (ETDEWEB)

Foxley, Sean, E-mail: sean.foxley@ndcn.ox.ac.uk; Karczmar, Gregory S. [Department of Radiology, University of Chicago, Chicago, Illinois 60637 (United States); Domowicz, Miriam [Department of Pediatrics, University of Chicago, Chicago, Illinois 60637 (United States); Schwartz, Nancy [Department of Pediatrics, Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637 (United States)

2015-03-15

the water resonance that is not present at +7.0 Hz and may be specific to white matter anatomy. Moreover, a frequency shift of 6.76 ± 0.55 Hz was measured between the molecular and granular layers of the cerebellum. This shift is demonstrated in corresponding spectra; water peaks from voxels in the molecular and granular layers are consistently 2 bins apart (7.0 Hz, as dictated by the spectral resolution) from one another. Conclusions: High spectral and spatial resolution MR imaging has the potential to accurately measure the changes in the water resonance in small voxels. This information can guide optimization and interpretation of more commonly used, more rapid imaging methods that depend on image contrast produced by local susceptibility gradients. In addition, with improved sampling methods, high spectral and spatial resolution data could be acquired in reasonable run times, and used for in vivo scans to increase sensitivity to variations in local susceptibility.

EnviroAtlas - Potential Wetland Areas - Contiguous United States

Data.gov (United States)

U.S. Environmental Protection Agency — The EnviroAtlas Potential Wetland Areas (PWA) dataset shows potential wetland areas at 30-meter resolution. Beginning two centuries ago, many wetlands were turned...

EnviroAtlas - Percent Stream Buffer Zone As Natural Land Cover for the Conterminous United States

Science.gov (United States)

This EnviroAtlas dataset shows the percentage of land area within a 30 meter buffer zone along the National Hydrography Dataset (NHD) high resolution stream network, and along water bodies such as lakes and ponds that are connected via flow to the streams, that is classified as forest land cover, modified forest land cover, and natural land cover using the 2006 National Land Cover Dataset (NLCD) for each Watershed Boundary Dataset (WBD) 12-digit hydrological unit (HUC) in the conterminous United States. This dataset was produced by the US EPA to support research and online mapping activities related to EnviroAtlas. EnviroAtlas (https://www.epa.gov/enviroatlas) allows the user to interact with a web-based, easy-to-use, mapping application to view and analyze multiple ecosystem services for the contiguous United States. The dataset is available as downloadable data (https://edg.epa.gov/data/Public/ORD/EnviroAtlas) or as an EnviroAtlas map service. Additional descriptive information about each attribute in this dataset can be found in its associated EnviroAtlas Fact Sheet (https://www.epa.gov/enviroatlas/enviroatlas-fact-sheets).

Alignment of the ATLAS inner detector for the LHC Run II

CERN Document Server

Butti, Pierfrancesco; The ATLAS collaboration

2015-01-01

ATLAS a multipurpose experiment at the LHC proton-proton collider. Its physics goals require high resolution, unbiased measurement of all charged particle kinematic parameters. These critically depend on the layout and performance of the tracking system, notably quality of its offline alignment. ATLAS is equipped with a tracking system built using different technologies, silicon planar sensors (pixel and micro-strip) and gaseous drift- tubes, all embedded in a 2T solenoidal magnetic field. For the LHC Run II, the system has been upgraded with the installation of a new pixel layer, the Insertable B-layer (IBL). Offline track alignment of the ATLAS tracking system has to deal with about 700,000 degrees of freedom (DoF) defining its geometrical parameters. The task requires using very large data sets and represents a considerable numerical challenge in terms of both CPU time and precision. The adopted strategy uses a hierarchical approach to alignment, combining local and global least squares techniques. An outl...

Thermodynamics of adaptive molecular resolution.

Science.gov (United States)

Delgado-Buscalioni, R

2016-11-13

A relatively general thermodynamic formalism for adaptive molecular resolution (AMR) is presented. The description is based on the approximation of local thermodynamic equilibrium and considers the alchemic parameter λ as the conjugate variable of the potential energy difference between the atomistic and coarse-grained model Φ=U (1) -U (0) The thermodynamic formalism recovers the relations obtained from statistical mechanics of H-AdResS (Español et al, J. Chem. Phys. 142, 064115, 2015 (doi:10.1063/1.4907006)) and provides relations between the free energy compensation and thermodynamic potentials. Inspired by this thermodynamic analogy, several generalizations of AMR are proposed, such as the exploration of new Maxwell relations and how to treat λ and Φ as 'real' thermodynamic variablesThis article is part of the themed issue 'Multiscale modelling at the physics-chemistry-biology interface'. © 2016 The Author(s).

Performance of the Electronic Readout of the ATLAS Liquid Argon Calorimeters

CERN Document Server

Abreu, H; Aleksa, M; Aperio Bella, L; Archambault, JP; Arfaoui, S; Arnaez, O; Auge, E; Aurousseau, M; Bahinipati, S; Ban, J; Banfi, D; Barajas, A; Barillari, T; Bazan, A; Bellachia, F; Beloborodova, O; Benchekroun, D; Benslama, K; Berger, N; Berghaus, F; Bernat, P; Bernier, R; Besson, N; Binet, S; Blanchard, JB; Blondel, A; Bobrovnikov, V; Bohner, O; Boonekamp, M; Bordoni, S; Bouchel, M; Bourdarios, C; Bozzone, A; Braun, HM; Breton, D; Brettel, H; Brooijmans, G; Caputo, R; Carli, T; Carminati, L; Caughron, S; Cavalleri, P; Cavalli, D; Chareyre, E; Chase, RL; Chekulaev, SV; Chen, H; Cheplakov, A; Chiche, R; Citterio, M; Cojocaru, C; Colas, J; Collard, C; Collot, J; Consonni, M; Cooke, M; Copic, K; Costa, GC; Courneyea, L; Cuisy, D; Cwienk, WD; Damazio, D; Dannheim, D; De Cecco, S; De La Broise, X; De La Taille, C; de Vivie, JB; Debennerot, B; Delagnes, E; Delmastro, M; Derue, F; Dhaliwal, S; Di Ciaccio, L; Doan, O; Dudziak, F; Duflot, L; Dumont-Dayot, N; Dzahini, D; Elles, S; Ertel, E; Escalier, M; Etienvre, AI; Falleau, I; Fanti, M; Farooque, T; Favre, P; Fayard, Louis; Fent, J; Ferencei, J; Fischer, A; Fournier, D; Fournier, L; Fras, M; Froeschl, R; Gadfort, T; Gallin-Martel, ML; Gibson, A; Gillberg, D; Gingrich, DM; Göpfert, T; Goodson, J; Gouighri, M; Goy, C; Grassi, V; Gray, J; Guillemin, T; Guo, B; Habring, J; Handel, C; Heelan, L; Heintz, H; Helary, L; Henrot-Versille, S; Hervas, L; Hobbs, J; Hoffman, J; Hostachy, JY; Hoummada, A; Hrivnac, J; Hrynova, T; Hubaut, F; Huber, J; Iconomidou-Fayard, L; Iengo, P; Imbert, P; Ishmukhametov, R; Jantsch, A; Javadov, N; Jezequel, S; Jimenez Belenguer, M; Ju, XY; Kado, M; Kalinowski, A; Kar, D; Karev, A; Katsanos, I; Kazarinov, M; Kerschen, N; Kierstead, J; Kim, MS; Kiryunin, A; Kladiva, E; Knecht, N; Kobel, M; Koletsou, I; König, S; Krieger, P; Kukhtin, V; Kuna, M; Kurchaninov, L; Labbe, J; Lacour, D; Ladygin, E; Lafaye, R; Laforge, B; Lamarra, D; Lampl, W; Lanni, F; Laplace, S; Laskus, H; Le Coguie, A; Le Dortz, O; Le Maner, C; Lechowski, M; Lee, SC; Lefebvre, M; Leonhardt, K; Lethiec, L; Leveque, J; Liang, Z; Liu, C; Liu, T; Liu, Y; Loch, P; Lu, J; Ma, H; Mader, W; Majewski, S; Makovec, N; Makowiecki, D; Mandelli, L; Mangeard, PS; Mansoulie, B; Marchand, JF; Marchiori, G; Martin, D; Martin-Chassard, G; Martin dit Latour, B; Marzin, A; Maslennikov, A; Massol, N; Matricon, P; Maximov, D; Mazzanti, M; McCarthy, T; McPherson, R; Menke, S; Meyer, JP; Ming, Y; Monnier, E; Mooshofer, P; Neganov, A; Niedercorn, F; Nikolic-Audit, I; Nugent, IM; Oakham, G; Oberlack, H; Ocariz, J; Odier, J; Oram, CJ; Orlov, I; Orr, R; Parsons, JA; Peleganchuk, S; Penson, A; Perini, L; Perrodo, P; Perrot, G; Perus, A; Petit, E; Pisarev, I; Plamondon, M; Poffenberger, P; Poggioli, L; Pospelov, G; Pralavorio, P; Prast, J; Prudent, X; Przysiezniak, H; Puzo, P; Quentin, M; Radeka, V; Rajagopalan, S; Rauter, E; Reimann, O; Rescia, S; Resende, B; Richer, JP; Ridel, M; Rios, R; Roos, L; Rosenbaum, G; Rosenzweig, H; Rossetto, O; Roudil, W; Rousseau, D; Ruan, X; Rudert, A; Rusakovich, N; Rusquart, P; Rutherfoord, J; Sauvage, G; Savine, A; Schaarschmidt, J; Schacht, P; Schaffer, A; Schram, M; Schwemling, P; Seguin Moreau, N; Seifert, F; Serin, L; Seuster, R; Shalyugin, A; Shupe, M; Simion, S; Sinervo, P; Sippach, W; Skovpen, K; Sliwa, R; Soukharev, A; Spano, F; Stavina, P; Straessner, A; Strizenec, P; Stroynowski, R; Talyshev, A; Tapprogge, S; Tarrade, F; Tartarelli, GF; Teuscher, R; Tikhonov, Yu; Tocut, V; Tompkins, D; Thompson, P; Tisserant, S; Todorov, T; Tomasz, F; Trincaz-Duvoid, S; Trinh, Thi N; Trochet, S; Trocme, B; Tschann-Grimm, K; Tsionou, D; Ueno, R; Unal, G; Urbaniec, D; Usov, Y; Voss, K; Veillet, JJ; Vincter, M; Vogt, S; Weng, Z; Whalen, K; Wicek, F; Wilkens, H; Wingerter-Seez, I; Wulf, E; Yang, Z; Ye, J; Yuan, L; Yurkewicz, A; Zarzhitsky, P; Zerwas, D; Zhang, H; Zhang, L; Zhou, N; Zimmer, J; Zitoun, R; Zivkovic, L

2010-01-01

The ATLAS detector has been designed for operation at the Large Hadron Collider at CERN. ATLAS includes electromagnetic and hadronic liquid argon calorimeters, with almost 200,000 channels of data that must be sampled at the LHC bunch crossing frequency of 40 MHz. The calorimeter electronics calibration and readout are performed by custom electronics developed specifically for these purposes. This paper describes the system performance of the ATLAS liquid argon calibration and readout electronics, including noise, energy and time resolution, and long term stability, with data taken mainly from full-system calibration runs performed after installation of the system in the ATLAS detector hall at CERN.

The updated ATLAS Jet Trigger for the LHC Run II

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00359694; The ATLAS collaboration

2015-01-01

After the current shutdown, the LHC is about to resume operation for a new data-taking period, when it will operate with increased luminosity, event rate and center of mass energy. The new conditions will impose more demanding constraints on the ATLAS online trigger reconstruction and selection system. To cope with such increased constraints, the ATLAS High-Level Trigger, placed after a first hardware-based Level~1 trigger, has been redesigned by merging two previously separated software-based processing levels. In the new joint processing level, the algorithms run in the same computing nodes, thus sharing resources, minimizing the data transfer from the detector buffers and increasing the algorithm flexibility. The jet trigger software selects events containing high transverse momentum hadronic jets. It needs optimal jet energy resolution to help rejecting an overwhelming background while retaining good efficiency for interesting jets. In particular, this requires the CPU-intensive reconstruction of tridimen...

AGIS: The ATLAS Grid Information System

CERN Document Server

Anisenkov, A; The ATLAS collaboration; Klimentov, A; Senchenko, A

2012-01-01

The ATLAS Computing model embraces the Grid paradigm and a high degree of decentralization and computing resources able to meet ATLAS requirements of petabytes scale data operations. In this paper we present ATLAS Grid Information System (AGIS) designed to integrate configuration and status information about resources, services and topology of whole ATLAS Grid needed by ATLAS Distributed Computing applications and services.

Upgrade of the ATLAS Tile Calorimeter for the High Luminosity LHC

CERN Document Server

Tang, Fukun; The ATLAS collaboration

2017-01-01

The Tile Calorimeter (TileCal) is the hadronic calorimeter of ATLAS covering the central region of the ATLAS experiment. TileCal will undergo a major replacement of its on- and off-detector electronics in 2024 for the high luminosity program of the LHC. The calorimeter signals will be digitized and sent directly to the off-detector electronics, where the signals are reconstructed and transmitted to the first level of trigger at a rate of 40 MHz. This will provide a better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies are being employed to determine which option will be selected. The off-detector electronics are based on the Advanced Telecommunications Computing Architecture (ATCA) standard and are equipped with high performance optical connectors. The system is designed to operate in a high radiation envi...

Upgrade of the ATLAS Tile Calorimeter for the High Luminosity LHC

CERN Document Server

Tang, Fukun; The ATLAS collaboration

2017-01-01

The Tile Calorimeter (TileCal) is the hadronic calorimeter of ATLAS cover-ing the central region of the ATLAS experiment. TileCal will undergo a major replacement of its on- and off-detector electronics in 2024 for the high luminosity program of the LHC. The calorimeter signals will be digitized and sent directly to the off-detector electronics, where the signals are reconstructed and shipped to the first level of trigger at a rate of 40 MHz. This will provide a better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies are being employed to determine which option will be selected. The off-detector electronic is based on the Advanced Telecommunications Computing Architecture (ATCA) standard and is equipped with high performance optical connectors. The system is designed to operate in a high radiation environmen...

ATLAS High-Level Trigger Performance for Calorimeter-Based Algorithms in LHC Run-I

CERN Document Server

Mann, A; The ATLAS collaboration

2013-01-01

The ATLAS detector operated during the three years of the Run-I of the Large Hadron Collider collecting information on a large number of proton-proton events. One the most important results obtained so far is the discovery of one Higgs boson. More precise measurements of this particle must be performed as well as there are other very important physics topics still to be explored. One of the key components of the ATLAS detector is its trigger system. It is composed of three levels: one (called Level 1 - L1) built on custom hardware and the two others based on software algorithms - called Level 2 (L2) and Event Filter (EF) – altogether referred to as the ATLAS High Level Trigger. The ATLAS trigger is responsible for reducing almost 20 million of collisions per second produced by the accelerator to less than 1000. The L2 operates only in the regions tagged by the first hardware level as containing possible interesting physics while the EF operates in the full detector, normally using offline-like algorithms to...

Interactive videodisk atlas of knee anatomy

International Nuclear Information System (INIS)

McEnery, K.W.; Woods, J.W.; Glenn, W.F.; Rauschning, W.

1987-01-01

An interactive, computer-assisted atlas of knee anatomy has been developed. MR and CT images from normal volunteers and cryomicrotomed anatomic images were recorded on a laser viodeodisk. Computer software allows movement through the knee and correlation of radiographic images in the coronal, axial, and sagittal planes. Computer graphics are superimposed on the videodisk images. A high-resolution color graphics, touch-screen monitor is included in the computer system. Learning modules allow for rapid identification of specific structure by touching their location on the screen. Computer-created testing modules are available that provide for self-assessment

What can we Expect of High-Resolution Spectroscopies on Carbohydrates?

Science.gov (United States)

Cocinero, Emilio J.; Ecija, Patricia; Uriarte, Iciar; Usabiaga, Imanol; Fernández, José A.; Basterretxea, Francisco J.; Lesarri, Alberto; Davis, Benjamin G.

2015-06-01

Carbohydrates are one of the most multifaceted building blocks, performing numerous roles in living organisms. We present several structural investigations on carbohydrates exploiting an experimental strategy which combines microwave (MW) and laser spectroscopies in high-resolution. Laser spectroscopy offers high sensitivity coupled to mass and conformer selectivity, making it ideal for polysaccharides studies. On the other hand, microwave spectroscopy provides much higher resolution and direct access to molecular structure of monosaccharides. This combined approach provides not only accurate chemical insight on conformation, structure and molecular properties, but also benchmarking standards guiding the development of theoretical calculations. In order to illustrate the possibilities of a combined MW-laser approach we present results on the conformational landscape and structural properties of several monosaccharides and oligosaccharides including microsolvation and molecular recognition processes of carbohydrates. E.J. Cocinero, A. Lesarri, P. écija, F.J. Basterretxea, J.-U. Grabow, J.A. Fernández and F. Casta {n}o Angew. Chem. Int. Ed. 51, 3119-3124, 2012. E.J. Cocinero, A. Lesarri, P. écija, Á. Cimas, B.G. Davis, F.J. Basterretxea, J.A. Fernández and F. Casta {n}o J. Am. Chem. Soc. 135, 2845-2852, 2013. E.J. Cocinero, P. Çarçabal, T.D. Vaden, J.P. Simons and B.G. Davis Nature 469, 76-80, 2011. C.S. Barry, E.J. Cocinero, P. Çarçabal, D.P. Gamblin, E.C. Stanca-Kaposta, S. M. Fernández-Alonso, S. Rudić, J.P. Simons and B.G. Davis J. Am. Chem. Soc. 135, 16895-16903, 2013.

Primary Vertex Reconstruction at the ATLAS Experiment

CERN Document Server

Grimm, Kathryn; The ATLAS collaboration

2016-01-01

Efficient and precise reconstruction of the primary vertex in an LHC collision is essential in both the reconstruction of the full kinematic properties of a hard-scatter event and of soft interactions as a measure of the amount of pile-up. The reconstruction of primary vertices in the busy, high pile-up environment of Run-2 of the LHC is a challenging task. New methods have been developed by the ATLAS experiment to reconstruct vertices in such environments. Advances in vertex seeding include methods taken from medical imaging, which allow for reconstruction of multiple vertices with small spatial separation. The adoption of this new seeding algorithm within the ATLAS adaptive vertex finding and fitting procedure will be discussed, and the first results of the new techniques from Run-2 data will be presented. Additionally, data-driven methods to evaluate vertex resolution will be presented with special focus on correct methods to evaluate the effect of the beam spot constraint; results from these methods in Ru...

ATLAS ITk Strip Detector for High-Luminosity LHC

CERN Document Server

Kroll, Jiri; The ATLAS collaboration

2017-01-01

The ATLAS experiment is currently preparing for an upgrade of the tracking system in the course of the High-Luminosity LHC that is scheduled for 2026. The expected peak instantaneous luminosity up to 7.5E34 per second and cm2 corresponding to approximately 200 inelastic proton-proton interactions per beam crossing, radiation damage at an integrated luminosity of 3000/fb and hadron fluencies over 1E16 1 MeV neutron equivalent per cm2, as well as fast hardware tracking capability that will bring Level-0 trigger rate of a few MHz down to a Level-1 trigger rate below 1 MHz require a replacement of existing Inner Detector by an all-silicon Inner Tracker (ITk) with a pixel detector surrounded by a strip detector. The current prototyping phase, that is working with ITk Strip Detector consisting of a four-layer barrel and a forward region composed of six discs on each side of the barrel, has resulted in the ATLAS ITk Strip Detector Technical Design Report (TDR), which starts the pre-production readiness phase at the ...

ATLAS ITk Strip Detector for High-Luminosity LHC

CERN Document Server

Kroll, Jiri; The ATLAS collaboration

2017-01-01

The ATLAS experiment is currently preparing for an upgrade of the tracking system in the course of the High-Luminosity LHC that is scheduled for 2026. The expected peak instantaneous luminosity up to $7.5\\times10^{34}\\;\\mathrm{cm}^{-2}\\mathrm{s}^{-1}$ corresponding to approximately 200 inelastic proton-proton interactions per beam crossing, radiation damage at an integrated luminosity of $3000\\;\\mathrm{fb}^{-1}$ and hadron fluencies over $2\\times10^{16}\\;\\mathrm{n}_{\\mathrm{eq}}/\\mathrm{cm}^{2}$, as well as fast hardware tracking capability that will bring Level-0 trigger rate of a few MHz down to a Level-1 trigger rate below 1 MHz require a replacement of existing Inner Detector by an all-silicon Inner Tracker with a pixel detector surrounded by a strip detector. The current prototyping phase, that is working with ITk Strip Detector consisting of a four-layer barrel and a forward region composed of six disks on each side of the barrel, has resulted in the ATLAS Inner Tracker Strip Detector Technical Design R...

ATLAS Colouring Book

CERN Multimedia

Anthony, Katarina

2016-01-01

The ATLAS Experiment Colouring Book is a free-to-download educational book, ideal for kids aged 5-9. It aims to introduce children to the field of High-Energy Physics, as well as the work being carried out by the ATLAS Collaboration.

Commissioning and first operation of the pCVD diamond ATLAS Beam Conditions Monitor

CERN Document Server

Dobos, D

2009-01-01

The main aim of the ATLAS Beam Conditions Monitor is to protect the ATLAS Inner Detector silicon trackers from high radiation doses caused by LHC beam incidents, e.g. magnet failures. The BCM uses in total 16 1x1 cm2 500 μm thick polycrystalline chemical vapor deposition (pCVD) diamond sensors. They are arranged in 8 positions around the ATLAS LHC interaction point. Time difference measurements with sub nanosecond resolution are performed to distinguish between particles from a collision and spray particles from a beam incident. An abundance of the latter leads the BCM to provoke an abort of the LHC beam. A FPGA based readout system with a sampling rate of 2.56 GHz performs the online data analysis and interfaces the results to ATLAS and the beam abort system. The BCM diamond sensors, the detector modules and their readout system are described. Results of the operation with the first LHC beams are reported and results of commissioning and timing measurements (e.g. with cosmic muons) in preparation for first ...

High resolution solar observations

International Nuclear Information System (INIS)

Title, A.

1985-01-01

Currently there is a world-wide effort to develop optical technology required for large diffraction limited telescopes that must operate with high optical fluxes. These developments can be used to significantly improve high resolution solar telescopes both on the ground and in space. When looking at the problem of high resolution observations it is essential to keep in mind that a diffraction limited telescope is an interferometer. Even a 30 cm aperture telescope, which is small for high resolution observations, is a big interferometer. Meter class and above diffraction limited telescopes can be expected to be very unforgiving of inattention to details. Unfortunately, even when an earth based telescope has perfect optics there are still problems with the quality of its optical path. The optical path includes not only the interior of the telescope, but also the immediate interface between the telescope and the atmosphere, and finally the atmosphere itself

High speed, High resolution terahertz spectrometers

International Nuclear Information System (INIS)

Kim, Youngchan; Yee, Dae Su; Yi, Miwoo; Ahn, Jaewook

2008-01-01

A variety of sources and methods have been developed for terahertz spectroscopy during almost two decades. Terahertz time domain spectroscopy (THz TDS)has attracted particular attention as a basic measurement method in the fields of THz science and technology. Recently, asynchronous optical sampling (AOS)THz TDS has been demonstrated, featuring rapid data acquisition and a high spectral resolution. Also, terahertz frequency comb spectroscopy (TFCS)possesses attractive features for high precision terahertz spectroscopy. In this presentation, we report on these two types of terahertz spectrometer. Our high speed, high resolution terahertz spectrometer is demonstrated using two mode locked femtosecond lasers with slightly different repetition frequencies without a mechanical delay stage. The repetition frequencies of the two femtosecond lasers are stabilized by use of two phase locked loops sharing the same reference oscillator. The time resolution of our terahertz spectrometer is measured using the cross correlation method to be 270 fs. AOS THz TDS is presented in Fig. 1, which shows a time domain waveform rapidly acquired on a 10ns time window. The inset shows a zoom into the signal with 100ps time window. The spectrum obtained by the fast Fourier Transformation (FFT)of the time domain waveform has a frequency resolution of 100MHz. The dependence of the signal to noise ratio (SNR)on the measurement time is also investigated

The alignment of the ATLAS Inner Detector in Run 2

CERN Document Server

Ripellino, Giulia; The ATLAS collaboration

2016-01-01

The ATLAS reconstruction of charged particle trajectories relies on the Inner Detector tracking system. The accuracy of the reconstruction is limited by the finite resolution of the detector elements and the knowledge about their positions. A precise alignment of the detector is therefore essential. In this poster we present the strategy and the status of the Inner Detector alignment in ATLAS during the LHC Run 2.

Determination of trace concentrations of chlorine in aqueous solutions by high-resolution continuum source graphite furnace molecular absorption spectrometry

Science.gov (United States)

Machyňák, Ľubomír; Čacho, František; Němeček, Martin; Beinrohr, Ernest

2016-11-01

Trace concentrations of total chlorine were determined by means of molecular absorption of indium mono-chloride (InCl) at 267.217 nm using high-resolution continuum source graphite furnace molecular absorption spectrometry. The effects of chemical modifiers and the amount of In on the sensitivity and accuracy were investigated. The optimum pyrolysis and vaporization temperatures were 600 °C and 1400 °C, respectively. The limit of detection and characteristic mass were found to be 0.10 ng and 0.21 ng, respectively. Potential non-spectral and spectral interferences were tested for various metals and non-metals at concentrations up to 50 mg L- 1 and for phosphoric, sulphuric and nitric acids. No spectral interferences were observed. Significant non-spectral interferences were observed with F, Br, and I at concentrations higher than 1 mg L- 1, 5 mg L- 1 and 25 mg L- 1, respectively, which is probably caused by formation of competitive indium halogen molecules. Higher concentrations of mineral acids depressed the signal owing to the formation of volatile HCl. The calibration curve was linear in the range between 0.3 and 10 ng with a correlation coefficient of R = 0.993. The elaborated method was used for the chlorine determination in various waters and a drug sample.

The performance of the jet trigger for the ATLAS detector during 2011 data taking

Czech Academy of Sciences Publication Activity Database

Aad, G.; Abbott, B.; Abdallah, J.; Chudoba, Jiří; Havránek, Miroslav; Hejbal, Jiří; Jakoubek, Tomáš; Kepka, Oldřich; Kupčo, Alexander; Kůs, Vlastimil; Lokajíček, Miloš; Lysák, Roman; Marčišovský, Michal; Mikeštíková, Marcela; Němeček, Stanislav; Penc, Ondřej; Šícho, Petr; Staroba, Pavel; Svatoš, Michal; Taševský, Marek; Vrba, Václav

2016-01-01

Roč. 76, č. 10 (2016), s. 1-67, č. článku 526. ISSN 1434-6044 Institutional support: RVO:68378271 Keywords : ATLAS * off-line * CERN LHC Coll * trigger * performance * programming * central region * resolution * efficiency * crossing * on-line Subject RIV: BF - Elementary Particles and High Energy Physics Impact factor: 5.331, year: 2016

The development of Global Feature eXtractor (gFEX) - the ATLAS calorimeter Level 1 trigger for ATLAS at High Luminosity LHC

CERN Document Server

AUTHOR|(SzGeCERN)759889; The ATLAS collaboration; Begel, Michael; Chen, Hucheng; Chen, Kai; Lanni, Francesco; Takai, Helio; Wu, Weihao

2017-01-01

As part of the ATLAS Phase-I Upgrade, the gFEX is designed to help maintain the ATLAS Level-1 trigger acceptance rate with the increasing LHC luminosity. The gFEX identifies patterns of energy associated with the hadronic decays of high momentum Higgs, W, & Z bosons, top quarks, and exotic particles in real time at the 40MHz LHC bunch crossing rate. The prototype v1 and v2 were designed and fully tested in 2015 and 2016 respectively. A pre-production gFEX board has been manufactured, which is an ATCA module consisting of three UltraScale+ FPGAs and one ZYNQ UltraScale+, and 35 MiniPODs are implemented in an ATCA module. This board receives coarse-granularity (0.2x0.2) information from the entire ATLAS calorimeters on up to 300 optical fibers and 96 links to the L1Topo at the speed up to 12.8 Gb/s.

Quantitative, high-resolution proteomics for data-driven systems biology

DEFF Research Database (Denmark)

Cox, J.; Mann, M.

2011-01-01

Systems biology requires comprehensive data at all molecular levels. Mass spectrometry (MS)-based proteomics has emerged as a powerful and universal method for the global measurement of proteins. In the most widespread format, it uses liquid chromatography (LC) coupled to high-resolution tandem...... primary structure of proteins including posttranslational modifications, to localize proteins to organelles, and to determine protein interactions. Here, we describe the principles of analysis and the areas of biology where proteomics can make unique contributions. The large-scale nature of proteomics...... data and its high accuracy pose special opportunities as well as challenges in systems biology that have been largely untapped so far....

ATLAS FTK a – very complex – custom super computer

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00008600; The ATLAS collaboration

2016-01-01

In the ever increasing pile-up LHC environment advanced techniques of analyzing the data are implemented in order to increase the rate of relevant physics processes with respect to background processes. The Fast TracKer (FTK) is a track finding implementation at hardware level that is designed to deliver full-scan tracks with PT above 1GeV to the ATLAS trigger system for every L1 accept (at a maximum rate of 100kHz). In order to achieve this performance a highly parallel system was designed and now it is under installation in ATLAS. In the beginning of 2016 it will provide tracks for the trigger system in a region covering the central part of the ATLAS detector, and during the year it's coverage will be extended to the full detector coverage. The system relies on matching hits coming from the silicon tracking detectors against 1 billion patterns stored in specially designed ASICS chips (Associative memory - AM06). In a first stage coarse resolution hits are matched against the patterns and the accepted hits u...

Digital Filtering Performance in the ATLAS Level-1 Calorimeter Trigger

CERN Document Server

Hadley, D R; The ATLAS collaboration

2010-01-01

The ATLAS Level-1 Calorimeter Trigger is a hardware-based system designed to identify high-pT jets, elec- tron/photon and tau candidates, and to measure total and missing ET in the ATLAS Liquid Argon and Tile calorimeters. It is a pipelined processor system, with a new set of inputs being evaluated every 25ns. The overall trigger decision has a latency budget of 2µs, including all transmission delays. The calorimeter trigger uses about 7200 reduced granularity analogue signals, which are first digitized at the 40 MHz LHC bunch-crossing frequency, before being passed to a digital Finite Impulse Re- sponse (FIR) filter. Due to latency and chip real-estate constraints, only a simple 5-element filter with limited precision can be used. Nevertheless, this filter achieves a significant reduction in noise, along with improving the bunch-crossing assignment and energy resolution for small signals. The context in which digital filters are used for the ATLAS Level-1 Calorimeter Trigger is presented, before descr...

A Highly Selective First-Level Muon Trigger With MDT Chamber Data for ATLAS at HL-LHC

CERN Document Server

INSPIRE-00390105

2016-07-11

Highly selective triggers are essential for the physics programme of the ATLAS experiment at HL-LHC where the instantaneous luminosity will be about an order of magnitude larger than the LHC instantaneous luminosity in Run 1. The first level muon trigger rate is dominated by low momentum muons below the nominal trigger threshold due to the moderate momentum resolution of the Resistive Plate and Thin Gap trigger chambers. The resulting high trigger rates at HL-LHC can be su?ciently reduced by using the data of the precision Muon Drift Tube chambers for the trigger decision. This requires the implementation of a fast MDT read-out chain and of a fast MDT track reconstruction algorithm with a latency of at most 6 microseconds. A hardware demonstrator of the fast read-out chain has been successfully tested at the HL-LHC operating conditions at the CERN Gamma Irradiation Facility. The fast track reconstruction algorithm has been implemented on a fast trigger processor.

Micromegas Detectors for the Muon Spectrometer Upgrade of the ATLAS Experiment

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00211509

2016-01-01

Large area Micromegas (MM) detectors will be employed for the Muon Spectrometer upgrade of the ATLAS experiment at the LHC. A total surface of about $150m^2$ of the forward regions of the Muon Spectrometer will be equipped with 8 layers of MM modules. Each module covers a surface area of approximately 2 to $3 m^2$ for a total active area of $1200 m^2$. Together with the small- strips Thin Gap Chambers, they will compose the two New Small Wheels, which will replace the innermost stations of the ATLAS Endcap Muon tracking system in the planned 2018/19 shutdown. This upgrade will mantain a low pt threshold for single muons and provides excellent tracking capabilities for the HL-LHC phase. The NSW project requires fully efficient MM chambers with spatial resolution down to $100 \\mu m$, at rate capability up to about $15kHz/cm^2$ and operation in a moderate (highly inhomogeneous) magnetic field up to B=0.3 T. The required tracking capability is provided by the intrinsic spatial resolution combined with a challengi...

Micromegas Detectors for the Muon Spectrometer Upgrade of the ATLAS Experiment

CERN Document Server

Bianco, Michele; The ATLAS collaboration

2015-01-01

Large area Micromegas (MM) detectors will be employed for the Muon Spectrometer upgrade of the ATLAS experiment at the LHC. A total surface of about 150 m2 of the forward regions of the Muon Spectrometer will be equipped with 8 layers of MM modules. Each module covers a surface area of approximately 2 to 3 m$^{2}$ for a total active area of 1200 m$^{2}$. Together with the small-strips Thin Gap Chambers, they will compose the two New Small Wheels, which will replace the innermost stations of the ATLAS Endcap Muon tracking system in the planned 2018/19 shutdown. This upgrade will maintain a low pt threshold for single muons and provides excellent tracking capabilities for the HL- LHC phase. The NSW project requires fully efficient MM chambers with spatial resolution down to 100 $ \\mu m$, a rate capability up to about 15 kHz/cm$^{2}$ and operation in a moderate (highly inhomogeneous) magnetic field up to B=0.3 T. The required tracking capability is provided by the intrinsic spatial resolution combined with a cha...

High Resolution Thz and FIR Spectroscopy of SOCl_2

Science.gov (United States)

Martin-Drumel, M. A.; Cuisset, A.; Sadovskii, D. A.; Mouret, G.; Hindle, F.; Pirali, O.

2013-06-01

Thionyl chloride (SOCl_2) is an extremely powerful oxidant widely used in industrial processes and playing a role in the chemistry of the atmosphere. In addition, it has a molecular configuration similar to that of phosgene (COCl_2), and is therefore of particular interest for security and defense applications. Low resolution vibrational spectra of gas phase SOCl_2 as well as high resolution pure rotational transitions up to 25 GHz have previously been investigated. To date no high resolution data are reported at frequencies higher than 25 GHz. We have investigated the THz absorption spectrum of SOCl_2 in the spectral region 70-650 GHz using a frequency multiplier chain coupled to a 1 m long single path cell containing a pressure of about 15 μbar. At the time of the writing, about 8000 pure rotational transitions of SO^{35}Cl_2 with highest J and K_a values of 110 and 50 respectively have been assigned on the spectrum. We have also recorded the high resolution FIR spectra of SOCl_2 in the spectral range 50-700 wn using synchrotron radiation at the AILES beamline of SOLEIL facility. A White-type cell aligned with an absorption path length of 150 m has been used to record, at a resolution of 0.001 wn, two spectra at pressures of 5 and 56 μbar of SOCl_2. On these spectra all FIR modes of SOCl_2 are observed (ν_2 to ν_6) and present a resolved rotational structure. Their analysis is in progress. T. J. Johnson et al., J. Phys. Chem. A 107, 6183 (2003) D. E. Martz and R. T. Lagemann, J. Chem. Phys. 22,1193 (1954) H. S. P. Müller and M. C. L. Gerry, J. Chem. Soc. Faraday Trans. 90, 3473 (1994)

A digital 3D atlas of the marmoset brain based on multi-modal MRI.

Science.gov (United States)

Liu, Cirong; Ye, Frank Q; Yen, Cecil Chern-Chyi; Newman, John D; Glen, Daniel; Leopold, David A; Silva, Afonso C

2018-04-01

The common marmoset (Callithrix jacchus) is a New-World monkey of growing interest in neuroscience. Magnetic resonance imaging (MRI) is an essential tool to unveil the anatomical and functional organization of the marmoset brain. To facilitate identification of regions of interest, it is desirable to register MR images to an atlas of the brain. However, currently available atlases of the marmoset brain are mainly based on 2D histological data, which are difficult to apply to 3D imaging techniques. Here, we constructed a 3D digital atlas based on high-resolution ex-vivo MRI images, including magnetization transfer ratio (a T1-like contrast), T2w images, and multi-shell diffusion MRI. Based on the multi-modal MRI images, we manually delineated 54 cortical areas and 16 subcortical regions on one hemisphere of the brain (the core version). The 54 cortical areas were merged into 13 larger cortical regions according to their locations to yield a coarse version of the atlas, and also parcellated into 106 sub-regions using a connectivity-based parcellation method to produce a refined atlas. Finally, we compared the new atlas set with existing histology atlases and demonstrated its applications in connectome studies, and in resting state and stimulus-based fMRI. The atlas set has been integrated into the widely-distributed neuroimaging data analysis software AFNI and SUMA, providing a readily usable multi-modal template space with multi-level anatomical labels (including labels from the Paxinos atlas) that can facilitate various neuroimaging studies of marmosets. Published by Elsevier Inc.

The high-precision x-ray tomograph for quality control of the ATLAS MDT muon spectrometer

CERN Document Server

Drakoulakos, D G; Maugain, J M; Rohrbach, F; Sedykh, Yu

1997-01-01

For the Large Hadron Collider (LHC) of the next millennium, a large general-purpose high-energy physics experiment, the ATLAS project, is being designed by a world-wide collaboration. One of its detectors, the ATLAS muon tracking detector, the MDT project, is on the scale of a very large industrial project: the design, the construction and assembly of twelve hundred large muon drift chambers are aimed at producing an exceptional quality in terms of accuracy, material reliability, assembly, and monitoring. This detector, based on the concept of very high mechanical precision required by the physics goals, will use tomography as a quality control platform. An X-ray tomograph prototype, monitored by a set of interferometers, has been developed at CERN to provide high-quality control of the MDT chambers which will be built in the collaborating institutes of the ATLAS project. First results have been obtained on MDT prototypes showing the validity of the X-ray tomograph approach for mechanical control of the detec...

High-Resolution Sonars: What Resolution Do We Need for Target Recognition?

Directory of Open Access Journals (Sweden)

Pailhas Yan

2010-01-01

Full Text Available Target recognition in sonar imagery has long been an active research area in the maritime domain, especially in the mine-counter measure context. Recently it has received even more attention as new sensors with increased resolution have been developed; new threats to critical maritime assets and a new paradigm for target recognition based on autonomous platforms have emerged. With the recent introduction of Synthetic Aperture Sonar systems and high-frequency sonars, sonar resolution has dramatically increased and noise levels decreased. Sonar images are distance images but at high resolution they tend to appear visually as optical images. Traditionally algorithms have been developed specifically for imaging sonars because of their limited resolution and high noise levels. With high-resolution sonars, algorithms developed in the image processing field for natural images become applicable. However, the lack of large datasets has hampered the development of such algorithms. Here we present a fast and realistic sonar simulator enabling development and evaluation of such algorithms.We develop a classifier and then analyse its performances using our simulated synthetic sonar images. Finally, we discuss sensor resolution requirements to achieve effective classification of various targets and demonstrate that with high resolution sonars target highlight analysis is the key for target recognition.

Anti-Atlas Mountains, Morocco

Science.gov (United States)

2003-01-01

The Anti-Atlas Mountains of Morocco formed as a result of the collision of the African and Eurasian tectonic plates about 80 million years ago. This collision destroyed the Tethys Ocean; the limestone, sandstone, claystone, and gypsum layers that formed the ocean bed were folded and crumpled to create the Atlas and Anti-Atlas Mountains. In this ASTER image, short wavelength infrared bands are combined to dramatically highlight the different rock types, and illustrate the complex folding. The yellowish, orange and green areas are limestones, sandstones and gypsum; the dark blue and green areas are underlying granitic rocks. The ability to map geology using ASTER data is enhanced by the multiple short wavelength infrared bands, that are sensitive to differences in rock mineralogy. This image was acquired on June 13, 2001 by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on NASA's Terra satellite. With its 14 spectral bands from the visible to the thermal infrared wavelength region, and its high spatial resolution of 15 to 90 meters (about 50 to 300 feet), ASTER images Earth to map and monitor the changing surface of our planet.ASTER is one of five Earth-observing instruments launched December 18, 1999, on NASA's Terra satellite. The instrument was built by Japan's Ministry of Economy, Trade and Industry. A joint U.S./Japan science team is responsible for validation and calibration of the instrument and the data products.The broad spectral coverage and high spectral resolution of ASTER will provide scientists in numerous disciplines with critical information for surface mapping, and monitoring of dynamic conditions and temporal change. Example applications are: monitoring glacial advances and retreats; monitoring potentially active volcanoes; identifying crop stress; determining cloud morphology and physical properties; wetlands evaluation; thermal pollution monitoring; coral reef degradation; surface temperature mapping of soils and

Mapping Hydrophobicity on the Protein Molecular Surface at Atom-Level Resolution

Science.gov (United States)

Nicolau Jr., Dan V.; Paszek, Ewa; Fulga, Florin; Nicolau, Dan V.

2014-01-01

A precise representation of the spatial distribution of hydrophobicity, hydrophilicity and charges on the molecular surface of proteins is critical for the understanding of the interaction with small molecules and larger systems. The representation of hydrophobicity is rarely done at atom-level, as this property is generally assigned to residues. A new methodology for the derivation of atomic hydrophobicity from any amino acid-based hydrophobicity scale was used to derive 8 sets of atomic hydrophobicities, one of which was used to generate the molecular surfaces for 35 proteins with convex structures, 5 of which, i.e., lysozyme, ribonuclease, hemoglobin, albumin and IgG, have been analyzed in more detail. Sets of the molecular surfaces of the model proteins have been constructed using spherical probes with increasingly large radii, from 1.4 to 20 Å, followed by the quantification of (i) the surface hydrophobicity; (ii) their respective molecular surface areas, i.e., total, hydrophilic and hydrophobic area; and (iii) their relative densities, i.e., divided by the total molecular area; or specific densities, i.e., divided by property-specific area. Compared with the amino acid-based formalism, the atom-level description reveals molecular surfaces which (i) present an approximately two times more hydrophilic areas; with (ii) less extended, but between 2 to 5 times more intense hydrophilic patches; and (iii) 3 to 20 times more extended hydrophobic areas. The hydrophobic areas are also approximately 2 times more hydrophobicity-intense. This, more pronounced “leopard skin”-like, design of the protein molecular surface has been confirmed by comparing the results for a restricted set of homologous proteins, i.e., hemoglobins diverging by only one residue (Trp37). These results suggest that the representation of hydrophobicity on the protein molecular surfaces at atom-level resolution, coupled with the probing of the molecular surface at different geometric resolutions

Alignment of the ATLAS Inner Detector upgraded for the LHC Run II

CERN Document Server

AUTHOR|(INSPIRE)INSPIRE-00386283; The ATLAS collaboration

2015-01-01

ATLAS is a multipurpose experiment at the LHC proton-proton collider. Its physics goals require high resolution, unbiased measurement of all charged particle kinematic parameters. These critically depend on the layout and performance of the tracking system, notably quality of its offline alignment. ATLAS is equipped with a tracking system built using different technologies, silicon planar sensors (pixel and micro-strip) and gaseous drift- tubes, all embedded in a 2T solenoidal magnetic field. For the LHC Run II, the system has been upgraded with the installation of a new pixel layer, the Insertable B-layer (IBL). Offline track alignment of the ATLAS tracking system has to deal with about 700,000 degrees of freedom (DoF) defining its geometrical parameters. The task requires using very large data sets and represents a considerable numerical challenge in terms of both CPU time and precision. The adopted strategy uses a hierarchical approach to alignment, combining local and global least squares techniques. An o...

Alignment of the ATLAS Inner Detector Upgraded for the LHC Run II

CERN Document Server

Butti, Pierfrancesco; The ATLAS collaboration

2015-01-01

ATLAS is a multipurpose experiment at the LHC proton-proton collider. Its physics goals require high resolution, unbiased measurement of all charged particle kinematic parameters. These critically depend on the layout and performance of the tracking system, notably quality of its offline alignment. ATLAS is equipped with a tracking system built using different technologies, silicon planar sensors (pixel and micro-strip) and gaseous drift- tubes, all embedded in a 2T solenoidal magnetic field. For the LHC Run II, the system has been upgraded with the installation of a new pixel layer, the Insertable B-layer (IBL). Offline track alignment of the ATLAS tracking system has to deal with about 700,000 degrees of freedom (DoF) defining its geometrical parameters. The task requires using very large data sets and represents a considerable numerical challenge in terms of both CPU time and precision. The adopted strategy uses a hierarchical approach to alignment, combining local and global least squares techniques. An o...

Maľovanka Experiment ATLAS - ATLAS Experiment Colouring Book in Slovak

CERN Multimedia

Anthony, Katarina

2017-01-01

Language: Slovak - The ATLAS Experiment Colouring Book is a free-to-download educational book, ideal for kids aged 5-9. It aims to introduce children to the field of High-Energy Physics, as well as the work being carried out by the ATLAS Collaboration.

ATLAS Deneyi Boyama Kitabı - ATLAS Experiment Colouring Book in Turkish

CERN Multimedia

Anthony, Katarina

2018-01-01

Language: Turkish - The ATLAS Experiment Colouring Book is a free-to-download educational book, ideal for kids aged 5-9. It aims to introduce children to the field of High-Energy Physics, as well as the work being carried out by the ATLAS Collaboration.

A combined on-line acoustic flowmeter and fluorocarbon coolant mixture analyzer for the ATLAS silicon tracker

International Nuclear Information System (INIS)

Bates, R.; Bitadze, A.; Battistin, M.; Berry, S.; Bonneau, P.; Botelho-Direito, J.; Girolamo, B. Di; Godlewski, J.; Perez-Rodriguez, E.; Zwalinski, L.; Bousson, N.; Hallewell, G.; Mathieu, M.; Rozanov, A.; Boyd, G.; Doubek, M.; Vacek, V.; Vitek, M.; Egorov, K.; Katunin, S.; Konstantinov, B.P.; McMahon, S.; Nagai, K.

2012-01-01

An upgrade to the ATLAS silicon tracker cooling control system may require a change from C 3 F 8 (octafluoro-propane) to a blend containing 10-30% of C 2 F 6 (hexafluoro-ethane) to reduce the evaporation temperature and better protect the silicon from cumulative radiation damage with increasing LHC luminosity. Central to this upgrade is a new ultrasonic flowmeter and binary gas analyzer for the real-time measurement of the C 3 F 8 /C 2 F 6 mixture ratio and flow. The instrument and its Supervisory, Control and Data Acquisition (SCADA) software are described in this paper. The instrument has demonstrated a resolution of 3.10 -3 for C 3 F 8 /C 2 F 6 mixtures with about 20% C 2 F 6 , and flow resolution of 2% of full scale for mass flows up to 30 gs -1 . In mixtures of widely-differing molecular weight (mw), higher mixture precision is possible: a sensitivity of -4 to leaks of C 3 F 8 into the ATLAS pixel detector nitrogen envelope (mw difference 160) has been seen. The instrument has many potential applications, including the analysis of mixtures of hydrocarbons, vapours for semi-conductor manufacture and anaesthesia. (authors)

Alignment of the ATLAS Inner Detector

CERN Document Server

Marti-Garcia, Salvador; The ATLAS collaboration

2016-01-01

The Run-2 of the LHC has presented new challenges to track and vertex reconstruction with higher energies, denser jets and higher rates. In addition, the Insertable B-layer (IBL) is a fourth pixel layer, which has been deployed at the centre of ATLAS during the longshutdown-1 of the LHC. The physics performance of the experiment requires a high resolution and unbiased measurement of all charged particle kinematic parameters. In its turn, the performance of the tracking depends, among many other issues, on the accurate determination of the alignment parameters of the tracking sensors. The offline track based alignment of the ATLAS tracking system has to deal with more than 700,000 degrees of freedom (DoF). This represents a considerable numerical challenge in terms of both CPU time and precision. During Run-2, a mechanical distortion of the IBL staves up to 20um has been observed during data-taking, plus other short time scale movements. The talk will also describe the procedures implemented to detect and remo...

ESSENSE: Ultra high resolution spectroscopy for the ESS

International Nuclear Information System (INIS)

Pasini, Stefano; Monkenbusch, Michael; Kozielewski, Tadeusz

2016-01-01

The instrument concept for a very high intensity neutron spin-echo spectrometer with ultimate resolution properties has been developed and submitted as an instrument proposal to ESS. Effective intensity gain factors up to 30 compared to the best current instruments are anticipated. In addition the resolution will be boosted to the technical limits by newly designed superconducting precession solenoids. The intensity gain results from the use of an optimized guide transporting the high flux from the ESS cold moderator on the one side and from the utilization of an extended wavelength frame of 8 Å yielding a multiplication of information collection rate on the other side. The instrument thus enables novel views on soft matter systems ranging from polymers, functional gels and more to to dynamics of biological molecules with relevance for MD development; the employment of new techniques for surface NSE (GINSE) may contribute to new knowledge in tribology and lubrication and other surface phenomena that currently are hampered by low intensity. New developments in “intelligent” polymers as e.g. self-healing, the properties of which depend on molecular mobility and dynamics, require observation at many 100 ns of correlation times with high intensity, which can be made with ESSENSE. (paper)

ATLAS Virtual Visits bringing the world into the ATLAS control room

CERN Document Server

AUTHOR|(CDS)2051192; The ATLAS collaboration; Yacoob, Sahal

2016-01-01

ATLAS Virtual Visits is a project initiated in 2011 for the Education & Outreach program of the ATLAS Experiment at CERN. Its goal is to promote public appreciation of the LHC physics program and particle physics, in general, through direct dialogue between ATLAS physicists and remote audiences. A Virtual Visit is an IP-based videoconference, coupled with a public webcast and video recording, between ATLAS physicists and remote locations around the world, that typically include high school or university classrooms, Masterclasses, science fairs, or other special events, usually hosted by collaboration members. Over the past two years, more than 10,000 people, from all of the world’s continents, have actively participated in ATLAS Virtual Visits, with many more enjoying the experience from the publicly available webcasts and recordings. We present an overview of our experience and discuss potential development for the future.

Development of high-strength and high-RRR aluminum-stabilized superconductor for the ATLAS thin solenoid

CERN Document Server

Wada, K; Sakamoto, H; Shimada, T; Nagasu, Y; Inoue, I H; Tsunoda, K; Endo, S; Yamamoto, A; Makida, Y; Tanaka, K; Doi, Y; Kondo, T

2000-01-01

The ATLAS central solenoid magnet is being constructed to provide a magnetic field of 2 Tesla in the central tracking part of the ATLAS detector at the LHC. Since the solenoid coil is placed in front of the liquid-argon electromagnetic calorimeter, the solenoid coil must be as thin (and transparent) as possible. The high-strength and high- RRR aluminum-stabilized superconductor is a key technology for the solenoid to be thinnest while keeping its stability. This has been developed with an alloy of 0.1 wt% nickel addition to 5N pure aluminum and with the subsequent mechanical cold working of 21% in area reduction. A yield strength of 110 MPa at 4.2 K has been realized keeping a residual resistivity ratio (RRR) of 590, after a heat treatment corresponding to coil curing at 130 degrees C for 15 hrs. This paper describes the optimization of the fabrication process and characteristics of the developed conductor. (8 refs).

Determination of sulfur in food by high resolution continuum source flame molecular absorption spectrometry

Energy Technology Data Exchange (ETDEWEB)

Zambrzycka, Elżbieta; Godlewska-Żyłkiewicz, Beata, E-mail: bgodlew@uwb.edu.pl

2014-11-01

In the present work, a fast, simple and sensitive analytical method for determination of sulfur in food and beverages by high resolution continuum source flame molecular absorption spectrometry was developed. The determination was performed via molecular absorption of carbon monosulfide, CS. Different CS rotational lines (257.959 nm, 258.033 nm, 258.055 nm), number of pixels and types of standard solution of sulfur, namely: sulfuric acid, sodium sulfate, ammonium sulfate, sodium sulfite, sodium sulfide, DL-cysteine, and L-cystine, were studied in terms of sensitivity, repeatability of results as well as limit of detection and limit of quantification. The best results were obtained for measurements of absorption of the CS molecule at 258.055 nm at the wavelength range covering 3 pixels and DL-cysteine in 0.2 mol L{sup −1} HNO{sub 3} solution as a calibration standard. Under optimized conditions the limit of detection and the limit of quantification achieved for sulfur were 10.9 mg L{sup −1} and 36.4 mg L{sup −1}, respectively. The repeatability of the results expressed as relative standard deviation was typically < 5%. The accuracy of the method was tested by analysis of digested biological certified reference materials (soya bean flour, corn flour and herbs) and recovery experiment for beverage samples with added known amount of sulfur standard. The recovery of analyte from such samples was in the range of 93–105% with the repeatability in the range of 4.1–5.0%. The developed method was applied for the determination of sulfur in milk (194 ± 10 mg kg{sup −1}), egg white (2188 ± 29 mg kg{sup −1}), mineral water (31.0 ± 0.9 mg L{sup −1}), white wine (260 ± 4 mg L{sup −1}) and red wine (82 ± 2 mg L{sup −1}), as well as in sample rich in ions, such as bitter mineral water (6900 ± 100 mg L{sup −1}). - Highlights: • HR-CS FMAS technique was used for sulfur measurement via molecular absorption of carbon monosulfide, CS. • Organic DL

High-resolution inverse Raman and resonant-wave-mixing spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Rahn, L.A. [Sandia National Laboratories, Livermore, CA (United States)

1993-12-01

These research activities consist of high-resolution inverse Raman spectroscopy (IRS) and resonant wave-mixing spectroscopy to support the development of nonlinear-optical techniques for temperature and concentration measurements in combustion research. Objectives of this work include development of spectral models of important molecular species needed to perform coherent anti-Stokes Raman spectroscopy (CARS) measurements and the investigation of new nonlinear-optical processes as potential diagnostic techniques. Some of the techniques being investigated include frequency-degenerate and nearly frequency-degenerate resonant four-wave-mixing (DFWM and NDFWM), and resonant multi-wave mixing (RMWM).

Polystyrene negative resist for high-resolution electron beam lithography

Directory of Open Access Journals (Sweden)

Ma Siqi

2011-01-01

Full Text Available Abstract We studied the exposure behavior of low molecular weight polystyrene as a negative tone electron beam lithography (EBL resist, with the goal of finding the ultimate achievable resolution. It demonstrated fairly well-defined patterning of a 20-nm period line array and a 15-nm period dot array, which are the densest patterns ever achieved using organic EBL resists. Such dense patterns can be achieved both at 20 and 5 keV beam energies using different developers. In addition to its ultra-high resolution capability, polystyrene is a simple and low-cost resist with easy process control and practically unlimited shelf life. It is also considerably more resistant to dry etching than PMMA. With a low sensitivity, it would find applications where negative resist is desired and throughput is not a major concern.

AGIS: The ATLAS Grid Information System

CERN Document Server

Anisenkov, Alexey; Di Girolamo, Alessandro; Gayazov, Stavro; Klimentov, Alexei; Oleynik, Danila; Senchenko, Alexander

2012-01-01

ATLAS is a particle physics experiment at the Large Hadron Collider at CERN. The experiment produces petabytes of data annually through simulation production and tens petabytes of data per year from the detector itself. The ATLAS Computing model embraces the Grid paradigm and a high degree of decentralization and computing resources able to meet ATLAS requirements of petabytes scale data operations. In this paper we present ATLAS Grid Information System (AGIS) designed to integrate configuration and status information about resources, services and topology of whole ATLAS Grid needed by ATLAS Distributed Computing applications and services.

A neural network clustering algorithm for the ATLAS silicon pixel detector

CERN Document Server

Aad, Georges; Abdallah, Jalal; Abdel Khalek, Samah; Abdinov, Ovsat; Aben, Rosemarie; Abi, Babak; Abolins, Maris; AbouZeid, Ossama; Abramowicz, Halina; Abreu, Henso; Abreu, Ricardo; Abulaiti, Yiming; Acharya, Bobby Samir; Adamczyk, Leszek; Adams, David; Adelman, Jahred; Adomeit, Stefanie; Adye, Tim; Agatonovic-Jovin, Tatjana; Aguilar-Saavedra, Juan Antonio; Agustoni, Marco; Ahlen, Steven; Ahmadov, Faig; Aielli, Giulio; Akerstedt, Henrik; Åkesson, Torsten Paul Ake; Akimoto, Ginga; Akimov, Andrei; Alberghi, Gian Luigi; Albert, Justin; Albrand, Solveig; Alconada Verzini, Maria Josefina; Aleksa, Martin; Aleksandrov, Igor; Alexa, Calin; Alexander, Gideon; Alexandre, Gauthier; Alexopoulos, Theodoros; Alhroob, Muhammad; Alimonti, Gianluca; Alio, Lion; Alison, John; Allbrooke, Benedict; Allison, Lee John; Allport, Phillip; Almond, John; Aloisio, Alberto; Alonso, Alejandro; Alonso, Francisco; Alpigiani, Cristiano; Altheimer, Andrew David; Alvarez Gonzalez, Barbara; Alviggi, Mariagrazia; Amako, Katsuya; Amaral Coutinho, Yara; Amelung, Christoph; Amidei, Dante; Amor Dos Santos, Susana Patricia; Amorim, Antonio; Amoroso, Simone; Amram, Nir; Amundsen, Glenn; Anastopoulos, Christos; Ancu, Lucian Stefan; Andari, Nansi; Andeen, Timothy; Anders, Christoph Falk; Anders, Gabriel; Anderson, Kelby; Andreazza, Attilio; Andrei, George Victor; Anduaga, Xabier; Angelidakis, Stylianos; Angelozzi, Ivan; Anger, Philipp; Angerami, Aaron; Anghinolfi, Francis; Anisenkov, Alexey; Anjos, Nuno; Annovi, Alberto; Antonaki, Ariadni; Antonelli, Mario; Antonov, Alexey; Antos, Jaroslav; Anulli, Fabio; Aoki, Masato; Aperio Bella, Ludovica; Apolle, Rudi; Arabidze, Giorgi; Aracena, Ignacio; Arai, Yasuo; Araque, Juan Pedro; Arce, Ayana; Arguin, Jean-Francois; Argyropoulos, Spyridon; Arik, Metin; Armbruster, Aaron James; Arnaez, Olivier; Arnal, Vanessa; Arnold, Hannah; Arratia, Miguel; Arslan, Ozan; Artamonov, Andrei; Artoni, Giacomo; Asai, Shoji; Asbah, Nedaa; Ashkenazi, Adi; Åsman, Barbro; Asquith, Lily; Assamagan, Ketevi; Astalos, Robert; Atkinson, Markus; Atlay, Naim Bora; Auerbach, Benjamin; Augsten, Kamil; Aurousseau, Mathieu; Avolio, Giuseppe; Azuelos, Georges; Azuma, Yuya; Baak, Max; Baas, Alessandra; Bacci, Cesare; Bachacou, Henri; Bachas, Konstantinos; Backes, Moritz; Backhaus, Malte; Backus Mayes, John; Badescu, Elisabeta; Bagiacchi, Paolo; Bagnaia, Paolo; Bai, Yu; Bain, Travis; Baines, John; Baker, Oliver Keith; Balek, Petr; Balli, Fabrice; Banas, Elzbieta; Banerjee, Swagato; Bannoura, Arwa A E; Bansal, Vikas; Bansil, Hardeep Singh; Barak, Liron; Baranov, Sergei; Barberio, Elisabetta Luigia; Barberis, Dario; Barbero, Marlon; Barillari, Teresa; Barisonzi, Marcello; Barklow, Timothy; Barlow, Nick; Barnett, Bruce; Barnett, Michael; Barnovska, Zuzana; Baroncelli, Antonio; Barone, Gaetano; Barr, Alan; Barreiro, Fernando; Barreiro Guimarães da Costa, João; Bartoldus, Rainer; Barton, Adam Edward; Bartos, Pavol; Bartsch, Valeria; Bassalat, Ahmed; Basye, Austin; Bates, Richard; Batkova, Lucia; Batley, Richard; Battaglia, Marco; Battistin, Michele; Bauer, Florian; Bawa, Harinder Singh; Beau, Tristan; Beauchemin, Pierre-Hugues; Beccherle, Roberto; Bechtle, Philip; Beck, Hans Peter; Becker, Anne Kathrin; Becker, Sebastian; Beckingham, Matthew; Becot, Cyril; Beddall, Andrew; Beddall, Ayda; Bedikian, Sourpouhi; Bednyakov, Vadim; Bee, Christopher; Beemster, Lars; Beermann, Thomas; Begel, Michael; Behr, Katharina; Belanger-Champagne, Camille; Bell, Paul; Bell, William; Bella, Gideon; Bellagamba, Lorenzo; Bellerive, Alain; Bellomo, Massimiliano; Belotskiy, Konstantin; Beltramello, Olga; Benary, Odette; Benchekroun, Driss; Bendtz, Katarina; Benekos, Nektarios; Benhammou, Yan; Benhar Noccioli, Eleonora; Benitez Garcia, Jorge-Armando; Benjamin, Douglas; Bensinger, James; Benslama, Kamal; Bentvelsen, Stan; Berge, David; Bergeaas Kuutmann, Elin; Berger, Nicolas; Berghaus, Frank; Beringer, Jürg; Bernard, Clare; Bernat, Pauline; Bernius, Catrin; Bernlochner, Florian Urs; Berry, Tracey; Berta, Peter; Bertella, Claudia; Bertoli, Gabriele; Bertolucci, Federico; Bertsche, David; Besana, Maria Ilaria; Besjes, Geert-Jan; Bessidskaia, Olga; Bessner, Martin Florian; Besson, Nathalie; Betancourt, Christopher; Bethke, Siegfried; Bhimji, Wahid; Bianchi, Riccardo-Maria; Bianchini, Louis; Bianco, Michele; Biebel, Otmar; Bieniek, Stephen Paul; Bierwagen, Katharina; Biesiada, Jed; Biglietti, Michela; Bilbao De Mendizabal, Javier; Bilokon, Halina; Bindi, Marcello; Binet, Sebastien; Bingul, Ahmet; Bini, Cesare; Black, Curtis; Black, James; Black, Kevin; Blackburn, Daniel; Blair, Robert; Blanchard, Jean-Baptiste; Blazek, Tomas; Bloch, Ingo; Blocker, Craig; Blum, Walter; Blumenschein, Ulrike; Bobbink, Gerjan; Bobrovnikov, Victor; Bocchetta, Simona Serena; Bocci, Andrea; Bock, Christopher; Boddy, Christopher Richard; Boehler, Michael; Boek, Thorsten Tobias; Bogaerts, Joannes Andreas; Bogdanchikov, Alexander; Bogouch, Andrei; Bohm, Christian; Bohm, Jan; Boisvert, Veronique; Bold, Tomasz; Boldea, Venera; Boldyrev, Alexey; Bomben, Marco; Bona, Marcella; Boonekamp, Maarten; Borisov, Anatoly; Borissov, Guennadi; Borri, Marcello; Borroni, Sara; Bortfeldt, Jonathan; Bortolotto, Valerio; Bos, Kors; Boscherini, Davide; Bosman, Martine; Boterenbrood, Hendrik; Boudreau, Joseph; Bouffard, Julian; Bouhova-Thacker, Evelina Vassileva; Boumediene, Djamel Eddine; Bourdarios, Claire; Bousson, Nicolas; Boutouil, Sara; Boveia, Antonio; Boyd, James; Boyko, Igor; Bracinik, Juraj; Brandt, Andrew; Brandt, Gerhard; Brandt, Oleg; Bratzler, Uwe; Brau, Benjamin; Brau, James; Braun, Helmut; Brazzale, Simone Federico; Brelier, Bertrand; Brendlinger, Kurt; Brennan, Amelia Jean; Brenner, Richard; Bressler, Shikma; Bristow, Kieran; Bristow, Timothy Michael; Britton, Dave; Brochu, Frederic; Brock, Ian; Brock, Raymond; Bromberg, Carl; Bronner, Johanna; Brooijmans, Gustaaf; Brooks, Timothy; Brooks, William; Brosamer, Jacquelyn; Brost, Elizabeth; Brown, Jonathan; Bruckman de Renstrom, Pawel; Bruncko, Dusan; Bruneliere, Renaud; Brunet, Sylvie; Bruni, Alessia; Bruni, Graziano; Bruschi, Marco; Bryngemark, Lene; Buanes, Trygve; Buat, Quentin; Bucci, Francesca; Buchholz, Peter; Buckingham, Ryan; Buckley, Andrew; Buda, Stelian Ioan; Budagov, Ioulian; Buehrer, Felix; Bugge, Lars; Bugge, Magnar Kopangen; Bulekov, Oleg; Bundock, Aaron Colin; Burckhart, Helfried; Burdin, Sergey; Burghgrave, Blake; Burke, Stephen; Burmeister, Ingo; Busato, Emmanuel; Büscher, Daniel; Büscher, Volker; Bussey, Peter; Buszello, Claus-Peter; Butler, Bart; Butler, John; Butt, Aatif Imtiaz; Buttar, Craig; Butterworth, Jonathan; Butti, Pierfrancesco; Buttinger, William; Buzatu, Adrian; Byszewski, Marcin; Cabrera Urbán, Susana; Caforio, Davide; Cakir, Orhan; Calafiura, Paolo; Calandri, Alessandro; Calderini, Giovanni; Calfayan, Philippe; Calkins, Robert; Caloba, Luiz; Calvet, David; Calvet, Samuel; Camacho Toro, Reina; Camarda, Stefano; Cameron, David; Caminada, Lea Michaela; Caminal Armadans, Roger; Campana, Simone; Campanelli, Mario; Campoverde, Angel; Canale, Vincenzo; Canepa, Anadi; Cano Bret, Marc; Cantero, Josu; Cantrill, Robert; Cao, Tingting; Capeans Garrido, Maria Del Mar; Caprini, Irinel; Caprini, Mihai; Capua, Marcella; Caputo, Regina; Cardarelli, Roberto; Carli, Tancredi; Carlino, Gianpaolo; Carminati, Leonardo; Caron, Sascha; Carquin, Edson; Carrillo-Montoya, German D; Carter, Janet; Carvalho, João; Casadei, Diego; Casado, Maria Pilar; Casolino, Mirkoantonio; Castaneda-Miranda, Elizabeth; Castelli, Angelantonio; Castillo Gimenez, Victoria; Castro, Nuno Filipe; Catastini, Pierluigi; Catinaccio, Andrea; Catmore, James; Cattai, Ariella; Cattani, Giordano; Caughron, Seth; Cavaliere, Viviana; Cavalli, Donatella; Cavalli-Sforza, Matteo; Cavasinni, Vincenzo; Ceradini, Filippo; Cerio, Benjamin; Cerny, Karel; Santiago Cerqueira, Augusto; Cerri, Alessandro; Cerrito, Lucio; Cerutti, Fabio; Cerv, Matevz; Cervelli, Alberto; Cetin, Serkant Ali; Chafaq, Aziz; Chakraborty, Dhiman; Chalupkova, Ina; Chang, Philip; Chapleau, Bertrand; Chapman, John Derek; Charfeddine, Driss; Charlton, Dave; Chau, Chav Chhiv; Chavez Barajas, Carlos Alberto; Cheatham, Susan; Chegwidden, Andrew; Chekanov, Sergei; Chekulaev, Sergey; Chelkov, Gueorgui; Chelstowska, Magda Anna; Chen, Chunhui; Chen, Hucheng; Chen, Karen; Chen, Liming; Chen, Shenjian; Chen, Xin; Chen, Yujiao; Cheng, Hok Chuen; Cheng, Yangyang; Cheplakov, Alexander; Cherkaoui El Moursli, Rajaa; Chernyatin, Valeriy; Cheu, Elliott; Chevalier, Laurent; Chiarella, Vitaliano; Chiefari, Giovanni; Childers, John Taylor; Chilingarov, Alexandre; Chiodini, Gabriele; Chisholm, Andrew; Chislett, Rebecca Thalatta; Chitan, Adrian; Chizhov, Mihail; Chouridou, Sofia; Chow, Bonnie Kar Bo; Chromek-Burckhart, Doris; Chu, Ming-Lee; Chudoba, Jiri; Chwastowski, Janusz; Chytka, Ladislav; Ciapetti, Guido; Ciftci, Abbas Kenan; Ciftci, Rena; Cinca, Diane; Cindro, Vladimir; Ciocio, Alessandra; Cirkovic, Predrag; Citron, Zvi Hirsh; Citterio, Mauro; Ciubancan, Mihai; Clark, Allan G; Clark, Philip James; Clarke, Robert; Cleland, Bill; Clemens, Jean-Claude; 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Cuhadar Donszelmann, Tulay; Cummings, Jane; Curatolo, Maria; Cuthbert, Cameron; Czirr, Hendrik; Czodrowski, Patrick; Czyczula, Zofia; D'Auria, Saverio; D'Onofrio, Monica; Da Cunha Sargedas De Sousa, Mario Jose; Da Via, Cinzia; Dabrowski, Wladyslaw; Dafinca, Alexandru; Dai, Tiesheng; Dale, Orjan; Dallaire, Frederick; Dallapiccola, Carlo; Dam, Mogens; Daniells, Andrew Christopher; Dano Hoffmann, Maria; Dao, Valerio; Darbo, Giovanni; Darmora, Smita; Dassoulas, James; Dattagupta, Aparajita; Davey, Will; David, Claire; Davidek, Tomas; Davies, Eleanor; Davies, Merlin; Davignon, Olivier; Davison, Adam; Davison, Peter; Davygora, Yuriy; Dawe, Edmund; Dawson, Ian; Daya-Ishmukhametova, Rozmin; De, Kaushik; de Asmundis, Riccardo; De Castro, Stefano; De Cecco, Sandro; De Groot, Nicolo; de Jong, Paul; De la Torre, Hector; De Lorenzi, Francesco; De Nooij, Lucie; De Pedis, Daniele; De Salvo, Alessandro; De Sanctis, Umberto; De Santo, Antonella; De Vivie De Regie, Jean-Baptiste; Dearnaley, William James; Debbe, Ramiro; Debenedetti, Chiara; Dechenaux, Benjamin; Dedovich, Dmitri; Deigaard, Ingrid; Del Peso, Jose; Del Prete, Tarcisio; Deliot, Frederic; Delitzsch, Chris Malena; Deliyergiyev, Maksym; Dell'Acqua, Andrea; Dell'Asta, Lidia; Dell'Orso, Mauro; Della Pietra, Massimo; della Volpe, Domenico; Delmastro, Marco; Delsart, Pierre-Antoine; Deluca, Carolina; Demers, Sarah; Demichev, Mikhail; Demilly, Aurelien; Denisov, Sergey; Derendarz, Dominik; Derkaoui, Jamal Eddine; Derue, Frederic; Dervan, Paul; Desch, Klaus Kurt; Deterre, Cecile; Deviveiros, Pier-Olivier; Dewhurst, Alastair; Dhaliwal, Saminder; Di Ciaccio, Anna; Di Ciaccio, Lucia; Di Domenico, Antonio; Di Donato, Camilla; Di Girolamo, Alessandro; Di Girolamo, Beniamino; Di Mattia, Alessandro; Di Micco, Biagio; Di Nardo, Roberto; Di Simone, Andrea; Di Sipio, Riccardo; Di Valentino, David; Dias, Flavia; Diaz, Marco Aurelio; Diehl, Edward; Dietrich, Janet; Dietzsch, Thorsten; Diglio, Sara; Dimitrievska, Aleksandra; Dingfelder, Jochen; Dionisi, Carlo; Dita, Petre; Dita, Sanda; Dittus, Fridolin; Djama, Fares; Djobava, Tamar; Barros do Vale, Maria Aline; Do Valle Wemans, André; Doan, Thi Kieu Oanh; Dobos, Daniel; Doglioni, Caterina; Doherty, Tom; Dohmae, Takeshi; Dolejsi, Jiri; Dolezal, Zdenek; Dolgoshein, Boris; Donadelli, Marisilvia; Donati, Simone; Dondero, Paolo; Donini, Julien; Dopke, Jens; Doria, Alessandra; Dova, Maria-Teresa; Doyle, Tony; Dris, Manolis; Dubbert, Jörg; Dube, Sourabh; Dubreuil, Emmanuelle; Duchovni, Ehud; Duckeck, Guenter; Ducu, Otilia Anamaria; Duda, Dominik; Dudarev, Alexey; Dudziak, Fanny; Duflot, Laurent; Duguid, Liam; Dührssen, Michael; Dunford, Monica; Duran Yildiz, Hatice; Düren, Michael; Durglishvili, Archil; Dwuznik, Michal; Dyndal, Mateusz; Ebke, Johannes; Edson, William; Edwards, Nicholas Charles; Ehrenfeld, Wolfgang; Eifert, Till; Eigen, Gerald; Einsweiler, Kevin; Ekelof, Tord; El Kacimi, Mohamed; Ellert, Mattias; Elles, Sabine; Ellinghaus, Frank; Ellis, Nicolas; Elmsheuser, Johannes; Elsing, Markus; Emeliyanov, Dmitry; Enari, Yuji; Endner, Oliver Chris; Endo, Masaki; Engelmann, Roderich; Erdmann, Johannes; Ereditato, Antonio; Eriksson, Daniel; Ernis, Gunar; Ernst, Jesse; Ernst, Michael; Ernwein, Jean; Errede, Deborah; Errede, Steven; Ertel, Eugen; Escalier, Marc; Esch, Hendrik; Escobar, Carlos; Esposito, Bellisario; Etienvre, Anne-Isabelle; Etzion, Erez; Evans, Hal; Ezhilov, Alexey; Fabbri, Laura; Facini, Gabriel; Fakhrutdinov, Rinat; Falciano, Speranza; Falla, Rebecca Jane; Faltova, Jana; Fang, Yaquan; Fanti, Marcello; Farbin, Amir; Farilla, Addolorata; Farooque, Trisha; Farrell, Steven; Farrington, Sinead; Farthouat, Philippe; Fassi, Farida; Fassnacht, Patrick; Fassouliotis, Dimitrios; Favareto, Andrea; Fayard, Louis; Federic, Pavol; Fedin, Oleg; Fedorko, Wojciech; Fehling-Kaschek, Mirjam; Feigl, Simon; Feligioni, Lorenzo; Feng, Cunfeng; Feng, Eric; Feng, Haolu; Fenyuk, Alexander; Fernandez Perez, Sonia; Ferrag, Samir; Ferrando, James; Ferrari, Arnaud; Ferrari, Pamela; Ferrari, Roberto; Ferreira de Lima, Danilo Enoque; Ferrer, Antonio; Ferrere, Didier; Ferretti, Claudio; Ferretto Parodi, Andrea; Fiascaris, Maria; Fiedler, Frank; Filipčič, Andrej; Filipuzzi, Marco; Filthaut, Frank; Fincke-Keeler, Margret; Finelli, Kevin Daniel; Fiolhais, Miguel; Fiorini, Luca; Firan, Ana; Fischer, Adam; Fischer, Julia; Fisher, Wade Cameron; Fitzgerald, Eric Andrew; Flechl, Martin; Fleck, Ivor; Fleischmann, Philipp; Fleischmann, Sebastian; Fletcher, Gareth Thomas; Fletcher, Gregory; Flick, Tobias; Floderus, Anders; Flores Castillo, Luis; Florez Bustos, Andres Carlos; Flowerdew, Michael; Formica, Andrea; Forti, Alessandra; Fortin, Dominique; Fournier, Daniel; Fox, Harald; Fracchia, Silvia; Francavilla, Paolo; Franchini, Matteo; Franchino, Silvia; Francis, David; Franklin, Melissa; Franz, Sebastien; Fraternali, Marco; French, Sky; Friedrich, Conrad; Friedrich, Felix; Froidevaux, Daniel; Frost, James; Fukunaga, Chikara; Fullana Torregrosa, Esteban; Fulsom, Bryan Gregory; Fuster, Juan; Gabaldon, Carolina; Gabizon, Ofir; Gabrielli, Alessandro; Gabrielli, Andrea; Gadatsch, Stefan; Gadomski, Szymon; Gagliardi, Guido; Gagnon, Pauline; Galea, Cristina; Galhardo, Bruno; Gallas, Elizabeth; Gallo, Valentina Santina; Gallop, Bruce; Gallus, Petr; Galster, Gorm Aske Gram Krohn; Gan, KK; Gandrajula, Reddy Pratap; Gao, Jun; Gao, Yongsheng; Garay Walls, Francisca; Garberson, Ford; García, Carmen; García Navarro, José Enrique; Garcia-Sciveres, Maurice; Gardner, Robert; Garelli, Nicoletta; Garonne, Vincent; Gatti, Claudio; Gaudio, Gabriella; Gaur, Bakul; Gauthier, Lea; Gauzzi, Paolo; Gavrilenko, Igor; Gay, Colin; Gaycken, Goetz; Gazis, Evangelos; Ge, Peng; Gecse, Zoltan; Gee, Norman; Geerts, Daniël Alphonsus Adrianus; Geich-Gimbel, Christoph; Gellerstedt, Karl; Gemme, Claudia; Gemmell, Alistair; Genest, Marie-Hélène; Gentile, Simonetta; George, Matthias; George, Simon; Gerbaudo, Davide; Gershon, Avi; Ghazlane, Hamid; Ghodbane, Nabil; Giacobbe, Benedetto; Giagu, Stefano; Giangiobbe, Vincent; Giannetti, Paola; Gianotti, Fabiola; Gibbard, Bruce; Gibson, Stephen; Gilchriese, Murdock; Gillam, Thomas; Gillberg, Dag; Gilles, Geoffrey; Gingrich, Douglas; Giokaris, Nikos; Giordani, MarioPaolo; Giordano, Raffaele; Giorgi, Filippo Maria; Giorgi, Francesco Michelangelo; Giraud, Pierre-Francois; Giugni, Danilo; Giuliani, Claudia; Giulini, Maddalena; Gjelsten, Børge Kile; Gkaitatzis, Stamatios; Gkialas, Ioannis; Gladilin, Leonid; Glasman, Claudia; Glatzer, Julian; Glaysher, Paul; Glazov, Alexandre; Glonti, George; Goblirsch-Kolb, Maximilian; Goddard, Jack Robert; Godfrey, Jennifer; Godlewski, Jan; Goeringer, Christian; Goldfarb, Steven; Golling, Tobias; Golubkov, Dmitry; Gomes, Agostinho; Gomez Fajardo, Luz Stella; Gonçalo, Ricardo; Goncalves Pinto Firmino Da Costa, Joao; Gonella, Laura; González de la Hoz, Santiago; Gonzalez Parra, Garoe; Gonzalez-Sevilla, Sergio; Goossens, Luc; Gorbounov, Petr Andreevich; Gordon, Howard; Gorelov, Igor; Gorini, Benedetto; Gorini, Edoardo; Gorišek, Andrej; Gornicki, Edward; Goshaw, Alfred; Gössling, Claus; Gostkin, Mikhail Ivanovitch; Gouighri, Mohamed; Goujdami, Driss; Goulette, Marc Phillippe; Goussiou, Anna; Goy, Corinne; Gozpinar, Serdar; Grabas, Herve Marie Xavier; Graber, Lars; Grabowska-Bold, Iwona; Grafström, Per; Grahn, Karl-Johan; Gramling, Johanna; Gramstad, Eirik; Grancagnolo, Sergio; Grassi, Valerio; Gratchev, Vadim; Gray, Heather; Graziani, Enrico; Grebenyuk, Oleg; Greenwood, Zeno Dixon; Gregersen, Kristian; Gregor, Ingrid-Maria; Grenier, Philippe; Griffiths, Justin; Grillo, Alexander; Grimm, Kathryn; Grinstein, Sebastian; Gris, Philippe Luc Yves; Grishkevich, Yaroslav; Grivaz, Jean-Francois; Grohs, Johannes Philipp; Grohsjean, Alexander; Gross, Eilam; Grosse-Knetter, Joern; Grossi, Giulio Cornelio; Groth-Jensen, Jacob; Grout, Zara Jane; Guan, Liang; Guescini, Francesco; Guest, Daniel; Gueta, Orel; Guicheney, Christophe; Guido, Elisa; Guillemin, Thibault; Guindon, Stefan; Gul, Umar; Gumpert, Christian; Gunther, Jaroslav; Guo, Jun; Gupta, Shaun; Gutierrez, Phillip; Gutierrez Ortiz, Nicolas Gilberto; Gutschow, Christian; Guttman, Nir; Guyot, Claude; Gwenlan, Claire; Gwilliam, Carl; Haas, Andy; Haber, Carl; Hadavand, Haleh Khani; Haddad, Nacim; Haefner, Petra; Hageböck, Stephan; Hajduk, Zbigniew; Hakobyan, Hrachya; Haleem, Mahsana; Hall, David; Halladjian, Garabed; Hamacher, Klaus; Hamal, Petr; Hamano, Kenji; Hamer, Matthias; Hamilton, Andrew; Hamilton, Samuel; Hamnett, Phillip George; Han, Liang; Hanagaki, Kazunori; Hanawa, Keita; Hance, Michael; Hanke, Paul; Hanna, Remie; Hansen, Jørgen Beck; Hansen, Jorn Dines; Hansen, Peter Henrik; Hara, Kazuhiko; Hard, Andrew; Harenberg, Torsten; Hariri, Faten; Harkusha, Siarhei; Harper, Devin; Harrington, Robert; Harris, Orin; Harrison, Paul Fraser; Hartjes, Fred; Hasegawa, Satoshi; Hasegawa, Yoji; Hasib, A; Hassani, Samira; Haug, Sigve; Hauschild, Michael; Hauser, Reiner; Havranek, Miroslav; Hawkes, Christopher; Hawkings, Richard John; Hawkins, Anthony David; Hayashi, Takayasu; Hayden, Daniel; Hays, Chris; Hayward, Helen; Haywood, Stephen; Head, Simon; Heck, Tobias; Hedberg, Vincent; Heelan, Louise; Heim, Sarah; Heim, Timon; Heinemann, Beate; Heinrich, Lukas; Hejbal, Jiri; Helary, Louis; Heller, Claudio; Heller, Matthieu; Hellman, Sten; Hellmich, Dennis; Helsens, Clement; Henderson, James; Henderson, Robert; Heng, Yang; Hengler, Christopher; Henrichs, Anna; Henriques Correia, Ana Maria; Henrot-Versille, Sophie; Hensel, Carsten; Herbert, Geoffrey Henry; Hernández Jiménez, Yesenia; Herrberg-Schubert, Ruth; Herten, Gregor; Hertenberger, Ralf; Hervas, Luis; Hesketh, Gavin Grant; Hessey, Nigel; Hickling, Robert; Higón-Rodriguez, Emilio; Hill, Ewan; Hill, John; Hiller, Karl Heinz; Hillert, Sonja; Hillier, Stephen; Hinchliffe, Ian; Hines, Elizabeth; Hirose, Minoru; Hirschbuehl, Dominic; Hobbs, John; Hod, Noam; Hodgkinson, Mark; Hodgson, Paul; Hoecker, Andreas; Hoeferkamp, Martin; Hoffman, Julia; Hoffmann, Dirk; Hofmann, Julia Isabell; Hohlfeld, Marc; Holmes, Tova Ray; Hong, Tae Min; Hooft van Huysduynen, Loek; Hostachy, Jean-Yves; Hou, Suen; Hoummada, Abdeslam; Howard, Jacob; Howarth, James; Hrabovsky, Miroslav; Hristova, Ivana; Hrivnac, Julius; Hryn'ova, Tetiana; Hsu, Catherine; Hsu, Pai-hsien Jennifer; Hsu, Shih-Chieh; Hu, Diedi; Hu, Xueye; Huang, Yanping; Hubacek, Zdenek; Hubaut, Fabrice; Huegging, Fabian; Huffman, Todd Brian; Hughes, Emlyn; Hughes, Gareth; Huhtinen, Mika; Hülsing, Tobias Alexander; Hurwitz, Martina; Huseynov, Nazim; Huston, Joey; Huth, John; Iacobucci, Giuseppe; Iakovidis, Georgios; Ibragimov, Iskander; Iconomidou-Fayard, Lydia; Ideal, Emma; Iengo, Paolo; Igonkina, Olga; Iizawa, Tomoya; Ikegami, Yoichi; Ikematsu, Katsumasa; Ikeno, Masahiro; Ilchenko, Iurii; Iliadis, Dimitrios; Ilic, Nikolina; Inamaru, Yuki; Ince, Tayfun; Ioannou, Pavlos; Iodice, Mauro; Iordanidou, Kalliopi; Ippolito, Valerio; Irles Quiles, Adrian; Isaksson, Charlie; Ishino, Masaya; Ishitsuka, Masaki; Ishmukhametov, Renat; Issever, Cigdem; Istin, Serhat; Iturbe Ponce, Julia Mariana; Iuppa, Roberto; Ivarsson, Jenny; Iwanski, Wieslaw; Iwasaki, Hiroyuki; Izen, Joseph; Izzo, Vincenzo; Jackson, Brett; Jackson, Matthew; Jackson, Paul; Jaekel, Martin; Jain, Vivek; Jakobs, Karl; Jakobsen, Sune; Jakoubek, Tomas; Jakubek, Jan; Jamin, David Olivier; Jana, Dilip; Jansen, Eric; Jansen, Hendrik; Janssen, Jens; Janus, Michel; Jarlskog, Göran; Javadov, Namig; Javůrek, Tomáš; Jeanty, Laura; Jejelava, Juansher; Jeng, Geng-yuan; Jennens, David; Jenni, Peter; Jentzsch, Jennifer; Jeske, Carl; Jézéquel, Stéphane; Ji, Haoshuang; Ji, Weina; Jia, Jiangyong; Jiang, Yi; Jimenez Belenguer, Marcos; Jin, Shan; Jinaru, Adam; Jinnouchi, Osamu; Joergensen, Morten Dam; Johansson, Erik; Johansson, Per; Johns, Kenneth; Jon-And, Kerstin; Jones, Graham; Jones, Roger; Jones, Tim; Jongmanns, Jan; Jorge, Pedro; Joshi, Kiran Daniel; Jovicevic, Jelena; Ju, Xiangyang; Jung, Christian; Jungst, Ralph Markus; Jussel, Patrick; Juste Rozas, Aurelio; Kaci, Mohammed; Kaczmarska, Anna; Kado, Marumi; Kagan, Harris; Kagan, Michael; Kajomovitz, Enrique; Kalderon, Charles William; Kama, Sami; Kamenshchikov, Andrey; Kanaya, Naoko; Kaneda, Michiru; Kaneti, Steven; Kantserov, Vadim; Kanzaki, Junichi; Kaplan, Benjamin; Kapliy, Anton; Kar, Deepak; Karakostas, Konstantinos; Karastathis, Nikolaos; Karnevskiy, Mikhail; Karpov, Sergey; Karpova, Zoya; Karthik, Krishnaiyengar; Kartvelishvili, Vakhtang; Karyukhin, Andrey; Kashif, Lashkar; Kasieczka, Gregor; Kass, Richard; Kastanas, Alex; Kataoka, Yousuke; Katre, Akshay; Katzy, Judith; Kaushik, Venkatesh; Kawagoe, Kiyotomo; Kawamoto, Tatsuo; Kawamura, Gen; Kazama, Shingo; Kazanin, Vassili; Kazarinov, Makhail; Keeler, Richard; Kehoe, Robert; Keil, Markus; Keller, John; Kempster, Jacob Julian; Keoshkerian, Houry; Kepka, Oldrich; Kerševan, Borut Paul; Kersten, Susanne; Kessoku, Kohei; Keung, Justin; Khalil-zada, Farkhad; Khandanyan, Hovhannes; Khanov, Alexander; Khodinov, Alexander; Khomich, Andrei; Khoo, Teng Jian; Khoriauli, Gia; Khoroshilov, Andrey; Khovanskiy, Valery; Khramov, Evgeniy; Khubua, Jemal; Kim, Hee Yeun; Kim, Hyeon Jin; Kim, Shinhong; Kimura, Naoki; Kind, Oliver; King, Barry; King, Matthew; King, Robert Steven Beaufoy; King, Samuel Burton; Kirk, Julie; Kiryunin, Andrey; Kishimoto, Tomoe; Kisielewska, Danuta; Kiss, Florian; Kittelmann, Thomas; Kiuchi, Kenji; Kladiva, Eduard; Klein, Max; Klein, Uta; Kleinknecht, Konrad; Klimek, Pawel; Klimentov, Alexei; Klingenberg, Reiner; Klinger, Joel Alexander; Klioutchnikova, Tatiana; Klok, Peter; Kluge, Eike-Erik; Kluit, Peter; Kluth, Stefan; Kneringer, Emmerich; Knoops, Edith; Knue, Andrea; Kobayashi, Dai; Kobayashi, Tomio; Kobel, Michael; Kocian, Martin; Kodys, Peter; Koevesarki, Peter; Koffas, Thomas; Koffeman, Els; Kogan, Lucy Anne; Kohlmann, Simon; Kohout, Zdenek; Kohriki, Takashi; Koi, Tatsumi; Kolanoski, Hermann; Koletsou, Iro; Koll, James; Komar, Aston; Komori, Yuto; Kondo, Takahiko; Kondrashova, Nataliia; Köneke, Karsten; König, Adriaan; König, Sebastian; Kono, Takanori; Konoplich, Rostislav; Konstantinidis, Nikolaos; Kopeliansky, Revital; Koperny, Stefan; Köpke, Lutz; Kopp, Anna Katharina; Korcyl, Krzysztof; Kordas, Kostantinos; Korn, Andreas; Korol, Aleksandr; Korolkov, Ilya; Korolkova, Elena; Korotkov, Vladislav; Kortner, Oliver; Kortner, Sandra; Kostyukhin, Vadim; Kotov, Vladislav; Kotwal, Ashutosh; Kourkoumelis, Christine; Kouskoura, Vasiliki; Koutsman, Alex; Kowalewski, Robert Victor; Kowalski, Tadeusz; Kozanecki, Witold; Kozhin, Anatoly; Kral, Vlastimil; Kramarenko, Viktor; Kramberger, Gregor; Krasnopevtsev, Dimitriy; Krasny, Mieczyslaw Witold; Krasznahorkay, Attila; Kraus, Jana; Kravchenko, Anton; Kreiss, Sven; Kretz, Moritz; Kretzschmar, Jan; Kreutzfeldt, Kristof; Krieger, Peter; Kroeninger, Kevin; Kroha, Hubert; Kroll, Joe; Kroseberg, Juergen; Krstic, Jelena; Kruchonak, Uladzimir; Krüger, Hans; Kruker, Tobias; Krumnack, Nils; Krumshteyn, Zinovii; Kruse, Amanda; Kruse, Mark; Kruskal, Michael; Kubota, Takashi; Kuday, Sinan; Kuehn, Susanne; Kugel, Andreas; Kuhl, Andrew; Kuhl, Thorsten; Kukhtin, Victor; Kulchitsky, Yuri; Kuleshov, Sergey; Kuna, Marine; Kunkle, Joshua; Kupco, Alexander; Kurashige, Hisaya; Kurochkin, Yurii; Kurumida, Rie; Kus, Vlastimil; Kuwertz, Emma Sian; Kuze, Masahiro; Kvita, Jiri; La Rosa, Alessandro; La Rotonda, Laura; Lacasta, Carlos; Lacava, Francesco; Lacey, James; Lacker, Heiko; Lacour, Didier; Lacuesta, Vicente Ramón; Ladygin, Evgueni; Lafaye, Remi; Laforge, Bertrand; Lagouri, Theodota; Lai, Stanley; Laier, Heiko; Lambourne, Luke; Lammers, Sabine; Lampen, Caleb; Lampl, Walter; Lançon, Eric; Landgraf, Ulrich; Landon, Murrough; Lang, Valerie Susanne; Lankford, Andrew; Lanni, Francesco; Lantzsch, Kerstin; Laplace, Sandrine; Lapoire, Cecile; Laporte, Jean-Francois; Lari, Tommaso; Lassnig, Mario; Laurelli, Paolo; Lavrijsen, Wim; Law, Alexander; Laycock, Paul; Le, Bao Tran; Le Dortz, Olivier; Le Guirriec, Emmanuel; Le Menedeu, Eve; LeCompte, Thomas; Ledroit-Guillon, Fabienne Agnes Marie; Lee, Claire Alexandra; Lee, Hurng-Chun; Lee, Jason; Lee, Shih-Chang; Lee, Lawrence; Lefebvre, Guillaume; Lefebvre, Michel; Legger, Federica; Leggett, Charles; Lehan, Allan; Lehmacher, Marc; Lehmann Miotto, Giovanna; Lei, Xiaowen; Leight, William Axel; Leisos, Antonios; Leister, Andrew Gerard; Leite, Marco Aurelio Lisboa; Leitner, Rupert; Lellouch, Daniel; Lemmer, Boris; Leney, Katharine; Lenz, Tatjana; Lenzen, Georg; Lenzi, Bruno; Leone, Robert; Leone, Sandra; Leonhardt, Kathrin; Leonidopoulos, Christos; Leontsinis, Stefanos; Leroy, Claude; Lester, Christopher; Lester, Christopher Michael; Levchenko, Mikhail; Levêque, Jessica; Levin, Daniel; Levinson, Lorne; Levy, Mark; Lewis, Adrian; Lewis, George; Leyko, Agnieszka; Leyton, Michael; Li, Bing; Li, Bo; Li, Haifeng; Li, Ho Ling; Li, Lei; Li, Liang; Li, Shu; Li, Yichen; Liang, Zhijun; Liao, Hongbo; Liberti, Barbara; Lichard, Peter; Lie, Ki; Liebal, Jessica; Liebig, Wolfgang; Limbach, Christian; Limosani, Antonio; Lin, Simon; Lin, Tai-Hua; Linde, Frank; Lindquist, Brian Edward; Linnemann, James; Lipeles, Elliot; Lipniacka, Anna; Lisovyi, Mykhailo; Liss, Tony; Lissauer, David; Lister, Alison; Litke, Alan; Liu, Bo; Liu, Dong; Liu, Jianbei; Liu, Kun; Liu, Lulu; Liu, Miaoyuan; Liu, Minghui; Liu, Yanwen; Livan, Michele; Livermore, Sarah; Lleres, Annick; Llorente Merino, Javier; Lloyd, Stephen; Lo Sterzo, Francesco; Lobodzinska, Ewelina; Loch, Peter; Lockman, William; Loddenkoetter, Thomas; Loebinger, Fred; Loevschall-Jensen, Ask Emil; Loginov, Andrey; Loh, Chang Wei; Lohse, Thomas; Lohwasser, Kristin; Lokajicek, Milos; Lombardo, Vincenzo Paolo; Long, Brian Alexander; Long, Jonathan; Long, Robin Eamonn; Lopes, Lourenco; Lopez Mateos, David; Lopez Paredes, Brais; Lopez Paz, Ivan; Lorenz, Jeanette; Lorenzo Martinez, Narei; Losada, Marta; Loscutoff, Peter; Lou, XinChou; Lounis, Abdenour; Love, Jeremy; Love, Peter; Lowe, Andrew; Lu, Feng; Lubatti, Henry; Luci, Claudio; Lucotte, Arnaud; Luehring, Frederick; Lukas, Wolfgang; Luminari, Lamberto; Lundberg, Olof; Lund-Jensen, Bengt; Lungwitz, Matthias; Lynn, David; Lysak, Roman; Lytken, Else; Ma, Hong; Ma, Lian Liang; Maccarrone, Giovanni; Macchiolo, Anna; Machado Miguens, Joana; Macina, Daniela; Madaffari, Daniele; Madar, Romain; Maddocks, Harvey Jonathan; Mader, Wolfgang; Madsen, Alexander; Maeno, Mayuko; Maeno, Tadashi; Magradze, Erekle; Mahboubi, Kambiz; Mahlstedt, Joern; Mahmoud, Sara; Maiani, Camilla; Maidantchik, Carmen; Maier, Andreas Alexander; Maio, Amélia; Majewski, Stephanie; Makida, Yasuhiro; Makovec, Nikola; Mal, Prolay; Malaescu, Bogdan; Malecki, Pawel; Maleev, Victor; Malek, Fairouz; Mallik, Usha; Malon, David; Malone, Caitlin; Maltezos, Stavros; Malyshev, Vladimir; Malyukov, Sergei; Mamuzic, Judita; Mandelli, Beatrice; Mandelli, Luciano; Mandić, Igor; Mandrysch, Rocco; Maneira, José; Manfredini, Alessandro; Manhaes de Andrade Filho, Luciano; Manjarres Ramos, Joany Andreina; Mann, Alexander; Manning, Peter; Manousakis-Katsikakis, Arkadios; Mansoulie, Bruno; Mantifel, Rodger; Mapelli, Livio; March, Luis; Marchand, Jean-Francois; Marchiori, Giovanni; Marcisovsky, Michal; Marino, Christopher; Marjanovic, Marija; Marques, Carlos; Marroquim, Fernando; Marsden, Stephen Philip; Marshall, Zach; Marti, Lukas Fritz; Marti-Garcia, Salvador; Martin, Brian; Martin, Brian Thomas; Martin, Tim; Martin, Victoria Jane; Martin dit Latour, Bertrand; Martinez, Homero; Martinez, Mario; Martin-Haugh, Stewart; Martyniuk, Alex; Marx, Marilyn; Marzano, Francesco; Marzin, Antoine; Masetti, Lucia; Mashimo, Tetsuro; Mashinistov, Ruslan; Masik, Jiri; Maslennikov, Alexey; Massa, Ignazio; Massol, Nicolas; Mastrandrea, Paolo; Mastroberardino, Anna; Masubuchi, Tatsuya; Mättig, Peter; Mattmann, Johannes; Maurer, Julien; Maxfield, Stephen; Maximov, Dmitriy; Mazini, Rachid; Mazzaferro, Luca; Mc Goldrick, Garrin; Mc Kee, Shawn Patrick; McCarn, Allison; McCarthy, Robert; McCarthy, Tom; McCubbin, Norman; McFarlane, Kenneth; Mcfayden, Josh; Mchedlidze, Gvantsa; McMahon, Steve; McPherson, Robert; Meade, Andrew; Mechnich, Joerg; Medinnis, Michael; Meehan, Samuel; Mehlhase, Sascha; Mehta, Andrew; Meier, Karlheinz; Meineck, Christian; Meirose, Bernhard; Melachrinos, Constantinos; Mellado Garcia, Bruce Rafael; Meloni, Federico; Mengarelli, Alberto; Menke, Sven; Meoni, Evelin; Mercurio, Kevin Michael; Mergelmeyer, Sebastian; Meric, Nicolas; Mermod, Philippe; Merola, Leonardo; Meroni, Chiara; Merritt, Frank; Merritt, Hayes; Messina, Andrea; Metcalfe, Jessica; Mete, Alaettin Serhan; Meyer, Carsten; Meyer, Christopher; Meyer, Jean-Pierre; Meyer, Jochen; Middleton, Robin; Migas, Sylwia; Mijović, Liza; Mikenberg, Giora; Mikestikova, Marcela; Mikuž, Marko; Milic, Adriana; Miller, David; Mills, Corrinne; Milov, Alexander; Milstead, David; Milstein, Dmitry; Minaenko, Andrey; Minashvili, Irakli; Mincer, Allen; Mindur, Bartosz; Mineev, Mikhail; Ming, Yao; Mir, Lluisa-Maria; Mirabelli, Giovanni; Mitani, Takashi; Mitrevski, Jovan; Mitsou, Vasiliki A; Mitsui, Shingo; Miucci, Antonio; Miyagawa, Paul; Mjörnmark, Jan-Ulf; Moa, Torbjoern; Mochizuki, Kazuya; Mohapatra, Soumya; Mohr, Wolfgang; Molander, Simon; Moles-Valls, Regina; Mönig, Klaus; Monini, Caterina; Monk, James; Monnier, Emmanuel; Montejo Berlingen, Javier; Monticelli, Fernando; Monzani, Simone; Moore, Roger; Moraes, Arthur; Morange, Nicolas; Moreno, Deywis; Moreno Llácer, María; Morettini, Paolo; Morgenstern, Marcus; Morii, Masahiro; Moritz, Sebastian; Morley, Anthony Keith; Mornacchi, Giuseppe; Morris, John; Morvaj, Ljiljana; Moser, Hans-Guenther; Mosidze, Maia; Moss, Josh; Motohashi, Kazuki; Mount, Richard; Mountricha, Eleni; Mouraviev, Sergei; Moyse, Edward; Muanza, Steve; Mudd, Richard; Mueller, Felix; Mueller, James; Mueller, Klemens; Mueller, Thibaut; Mueller, Timo; Muenstermann, Daniel; Munwes, Yonathan; Murillo Quijada, Javier Alberto; Murray, Bill; Musheghyan, Haykuhi; Musto, Elisa; Myagkov, Alexey; Myska, Miroslav; Nackenhorst, Olaf; Nadal, Jordi; Nagai, Koichi; Nagai, Ryo; Nagai, Yoshikazu; Nagano, Kunihiro; Nagarkar, Advait; Nagasaka, Yasushi; Nagel, Martin; Nairz, Armin Michael; Nakahama, Yu; Nakamura, Koji; Nakamura, Tomoaki; Nakano, Itsuo; Namasivayam, Harisankar; Nanava, Gizo; Narayan, Rohin; Nattermann, Till; Naumann, Thomas; Navarro, Gabriela; Nayyar, Ruchika; Neal, Homer; Nechaeva, Polina; Neep, Thomas James; Nef, Pascal Daniel; Negri, Andrea; Negri, Guido; Negrini, Matteo; Nektarijevic, Snezana; Nelson, Andrew; Nelson, Timothy Knight; Nemecek, Stanislav; Nemethy, Peter; Nepomuceno, Andre Asevedo; Nessi, Marzio; Neubauer, Mark; Neumann, Manuel; Neves, Ricardo; Nevski, Pavel; Newman, Paul; Nguyen, Duong Hai; Nickerson, Richard; Nicolaidou, Rosy; Nicquevert, Bertrand; Nielsen, Jason; Nikiforou, Nikiforos; Nikiforov, Andriy; Nikolaenko, Vladimir; Nikolic-Audit, Irena; Nikolics, Katalin; Nikolopoulos, Konstantinos; Nilsson, Paul; Ninomiya, Yoichi; Nisati, Aleandro; Nisius, Richard; Nobe, Takuya; Nodulman, Lawrence; Nomachi, Masaharu; Nomidis, Ioannis; Norberg, Scarlet; Nordberg, Markus; Novgorodova, Olga; Nowak, Sebastian; Nozaki, Mitsuaki; Nozka, Libor; Ntekas, Konstantinos; Nunes Hanninger, Guilherme; Nunnemann, Thomas; Nurse, Emily; Nuti, Francesco; O'Brien, Brendan Joseph; O'grady, Fionnbarr; O'Neil, Dugan; O'Shea, Val; Oakham, Gerald; Oberlack, Horst; Obermann, Theresa; Ocariz, Jose; Ochi, Atsuhiko; Ochoa, Ines; Oda, Susumu; Odaka, Shigeru; Ogren, Harold; Oh, Alexander; Oh, Seog; Ohm, Christian; Ohman, Henrik; Ohshima, Takayoshi; Okamura, Wataru; Okawa, Hideki; Okumura, Yasuyuki; Okuyama, Toyonobu; Olariu, Albert; Olchevski, Alexander; Olivares Pino, Sebastian Andres; Oliveira Damazio, Denis; Oliver Garcia, Elena; Olszewski, Andrzej; Olszowska, Jolanta; Onofre, António; Onyisi, Peter; Oram, Christopher; Oreglia, Mark; Oren, Yona; Orestano, Domizia; Orlando, Nicola; Oropeza Barrera, Cristina; Orr, Robert; Osculati, Bianca; Ospanov, Rustem; Otero y Garzon, Gustavo; Otono, Hidetoshi; Ouchrif, Mohamed; Ouellette, Eric; Ould-Saada, Farid; Ouraou, Ahmimed; Oussoren, Koen Pieter; Ouyang, Qun; Ovcharova, Ana; Owen, Mark; Ozcan, Veysi Erkcan; Ozturk, Nurcan; Pachal, Katherine; Pacheco Pages, Andres; Padilla Aranda, Cristobal; Pagáčová, Martina; Pagan Griso, Simone; Paganis, Efstathios; Pahl, Christoph; Paige, Frank; Pais, Preema; Pajchel, Katarina; Palacino, Gabriel; Palestini, Sandro; Palka, Marek; Pallin, Dominique; Palma, Alberto; Palmer, Jody; Pan, Yibin; Panagiotopoulou, Evgenia; Panduro Vazquez, William; Pani, Priscilla; Panikashvili, Natalia; Panitkin, Sergey; Pantea, Dan; Paolozzi, Lorenzo; Papadopoulou, Theodora; Papageorgiou, Konstantinos; Paramonov, Alexander; Paredes Hernandez, Daniela; Parker, Michael Andrew; Parodi, Fabrizio; Parsons, John; Parzefall, Ulrich; Pasqualucci, Enrico; Passaggio, Stefano; Passeri, Antonio; Pastore, Fernanda; Pastore, Francesca; Pásztor, Gabriella; Pataraia, Sophio; Patel, Nikhul; Pater, Joleen; Patricelli, Sergio; Pauly, Thilo; Pearce, James; Pedersen, Maiken; Pedraza Lopez, Sebastian; Pedro, Rute; Peleganchuk, Sergey; Pelikan, Daniel; Peng, Haiping; Penning, Bjoern; Penwell, John; Perepelitsa, Dennis; Perez Codina, Estel; Pérez García-Estañ, María Teresa; Perez Reale, Valeria; Perini, Laura; Pernegger, Heinz; Perrino, Roberto; Peschke, Richard; Peshekhonov, Vladimir; Peters, Krisztian; Peters, Yvonne; Petersen, Brian; Petersen, Troels; Petit, Elisabeth; Petridis, Andreas; Petridou, Chariclia; Petrolo, Emilio; Petrucci, Fabrizio; Pettersson, Nora Emilia; Pezoa, Raquel; Phillips, Peter William; Piacquadio, Giacinto; Pianori, Elisabetta; Picazio, Attilio; Piccaro, Elisa; Piccinini, Maurizio; Piegaia, Ricardo; Pignotti, David; Pilcher, James; Pilkington, Andrew; Pina, João Antonio; Pinamonti, Michele; Pinder, Alex; Pinfold, James; Pingel, Almut; Pinto, Belmiro; Pires, Sylvestre; Pitt, Michael; Pizio, Caterina; Plazak, Lukas; Pleier, Marc-Andre; Pleskot, Vojtech; Plotnikova, Elena; Plucinski, Pawel; Poddar, Sahill; Podlyski, Fabrice; Poettgen, Ruth; Poggioli, Luc; Pohl, David-leon; Pohl, Martin; Polesello, Giacomo; Policicchio, Antonio; Polifka, Richard; Polini, Alessandro; Pollard, Christopher Samuel; Polychronakos, Venetios; Pommès, Kathy; Pontecorvo, Ludovico; Pope, Bernard; Popeneciu, Gabriel Alexandru; Popovic, Dragan; Poppleton, Alan; Portell Bueso, Xavier; Pospisil, Stanislav; Potamianos, Karolos; Potrap, Igor; Potter, Christina; Potter, Christopher; Poulard, Gilbert; Poveda, Joaquin; Pozdnyakov, Valery; Pralavorio, Pascal; Pranko, Aliaksandr; Prasad, Srivas; Pravahan, Rishiraj; Prell, Soeren; Price, Darren; Price, Joe; Price, Lawrence; Prieur, Damien; Primavera, Margherita; Proissl, Manuel; Prokofiev, Kirill; Prokoshin, Fedor; Protopapadaki, Eftychia-sofia; Protopopescu, Serban; Proudfoot, James; Przybycien, Mariusz; Przysiezniak, Helenka; Ptacek, Elizabeth; Puddu, Daniele; Pueschel, Elisa; Puldon, David; Purohit, Milind; Puzo, Patrick; Qian, Jianming; Qin, Gang; Qin, Yang; Quadt, Arnulf; Quarrie, David; Quayle, William; Queitsch-Maitland, Michaela; Quilty, Donnchadha; Qureshi, Anum; Radeka, Veljko; Radescu, Voica; Radhakrishnan, Sooraj Krishnan; Radloff, Peter; Rados, Pere; Ragusa, Francesco; Rahal, Ghita; Rajagopalan, Srinivasan; Rammensee, Michael; Randle-Conde, Aidan Sean; Rangel-Smith, Camila; Rao, Kanury; Rauscher, Felix; Rave, Tobias Christian; Ravenscroft, Thomas; Raymond, Michel; Read, Alexander Lincoln; Readioff, Nathan Peter; Rebuzzi, Daniela; Redelbach, Andreas; Redlinger, George; Reece, Ryan; Reeves, Kendall; Rehnisch, Laura; Reisin, Hernan; Relich, Matthew; Rembser, Christoph; Ren, Huan; Ren, Zhongliang; Renaud, Adrien; Rescigno, Marco; Resconi, Silvia; Rezanova, Olga; Reznicek, Pavel; Rezvani, Reyhaneh; Richter, Robert; Ridel, Melissa; Rieck, Patrick; Rieger, Julia; Rijssenbeek, Michael; Rimoldi, Adele; Rinaldi, Lorenzo; Ritsch, Elmar; Riu, Imma; Rizatdinova, Flera; Rizvi, Eram; Robertson, Steven; Robichaud-Veronneau, Andree; Robinson, Dave; Robinson, James; Robson, Aidan; Roda, Chiara; Rodrigues, Luis; Roe, Shaun; Røhne, Ole; Rolli, Simona; Romaniouk, Anatoli; Romano, Marino; Romero Adam, Elena; Rompotis, Nikolaos; Roos, Lydia; Ros, Eduardo; Rosati, Stefano; Rosbach, Kilian; Rose, Matthew; Rosendahl, Peter Lundgaard; Rosenthal, Oliver; Rossetti, Valerio; Rossi, Elvira; Rossi, Leonardo Paolo; Rosten, Rachel; Rotaru, Marina; Roth, Itamar; Rothberg, Joseph; Rousseau, David; Royon, Christophe; Rozanov, Alexandre; Rozen, Yoram; Ruan, Xifeng; Rubbo, Francesco; Rubinskiy, Igor; Rud, Viacheslav; Rudolph, Christian; Rudolph, Matthew Scott; Rühr, Frederik; Ruiz-Martinez, Aranzazu; Rurikova, Zuzana; Rusakovich, Nikolai; Ruschke, Alexander; Rutherfoord, John; Ruthmann, Nils; Ryabov, Yury; Rybar, Martin; Rybkin, Grigori; Ryder, Nick; Saavedra, Aldo; Sacerdoti, Sabrina; Saddique, Asif; Sadeh, Iftach; Sadrozinski, Hartmut; Sadykov, Renat; Safai Tehrani, Francesco; Sakamoto, Hiroshi; Sakurai, Yuki; Salamanna, Giuseppe; Salamon, Andrea; Saleem, Muhammad; Salek, David; Sales De Bruin, Pedro Henrique; Salihagic, Denis; Salnikov, Andrei; Salt, José; Salvachua Ferrando, Belén; Salvatore, Daniela; Salvatore, Pasquale Fabrizio; Salvucci, Antonio; Salzburger, Andreas; Sampsonidis, Dimitrios; Sanchez, Arturo; Sánchez, Javier; Sanchez Martinez, Victoria; Sandaker, Heidi; Sandbach, Ruth Laura; Sander, Heinz Georg; Sanders, Michiel; Sandhoff, Marisa; Sandoval, Tanya; Sandoval, Carlos; Sandstroem, Rikard; Sankey, Dave; Sansoni, Andrea; Santoni, Claudio; Santonico, Rinaldo; Santos, Helena; Santoyo Castillo, Itzebelt; Sapp, Kevin; Sapronov, Andrey; Saraiva, João; Sarrazin, Bjorn; Sartisohn, Georg; Sasaki, Osamu; Sasaki, Yuichi; Sauvage, Gilles; Sauvan, Emmanuel; Savard, Pierre; Savu, Dan Octavian; Sawyer, Craig; Sawyer, Lee; Saxon, David; Saxon, James; Sbarra, Carla; Sbrizzi, Antonio; Scanlon, Tim; Scannicchio, Diana; Scarcella, Mark; Scarfone, Valerio; Schaarschmidt, Jana; Schacht, Peter; Schaefer, Douglas; Schaefer, Ralph; Schaepe, Steffen; Schaetzel, Sebastian; Schäfer, Uli; Schaffer, Arthur; Schaile, Dorothee; Schamberger, R. Dean; Scharf, Veit; Schegelsky, Valery; Scheirich, Daniel; Schernau, Michael; Scherzer, Max; Schiavi, Carlo; Schieck, Jochen; Schillo, Christian; Schioppa, Marco; Schlenker, Stefan; Schmidt, Evelyn; Schmieden, Kristof; Schmitt, Christian; Schmitt, Christopher; Schmitt, Sebastian; Schneider, Basil; Schnellbach, Yan Jie; Schnoor, Ulrike; Schoeffel, Laurent; Schoening, Andre; Schoenrock, Bradley Daniel; Schorlemmer, Andre Lukas; Schott, Matthias; Schouten, Doug; Schovancova, Jaroslava; Schramm, Steven; Schreyer, Manuel; Schroeder, Christian; Schuh, Natascha; Schultens, Martin Johannes; Schultz-Coulon, Hans-Christian; Schulz, Holger; Schumacher, Markus; Schumm, Bruce; Schune, Philippe; Schwanenberger, Christian; Schwartzman, Ariel; Schwegler, Philipp; Schwemling, Philippe; Schwienhorst, Reinhard; Schwindling, Jerome; Schwindt, Thomas; Schwoerer, Maud; Sciacca, Gianfranco; Scifo, Estelle; Sciolla, Gabriella; Scott, Bill; Scuri, Fabrizio; Scutti, Federico; Searcy, Jacob; Sedov, George; Sedykh, Evgeny; Seidel, Sally; Seiden, Abraham; Seifert, Frank; Seixas, José; Sekhniaidze, Givi; Sekula, Stephen; Selbach, Karoline Elfriede; Seliverstov, Dmitry; Sellers, Graham; Semprini-Cesari, Nicola; Serfon, Cedric; Serin, Laurent; Serkin, Leonid; Serre, Thomas; Seuster, Rolf; Severini, Horst; Sfiligoj, Tina; Sforza, Federico; Sfyrla, Anna; Shabalina, Elizaveta; Shamim, Mansoora; Shan, Lianyou; Shang, Ruo-yu; Shank, James; Shapiro, Marjorie; Shatalov, Pavel; Shaw, Kate; Shehu, Ciwake Yusufu; Sherwood, Peter; Shi, Liaoshan; Shimizu, Shima; Shimmin, Chase Owen; Shimojima, Makoto; Shiyakova, Mariya; Shmeleva, Alevtina; Shochet, Mel; Short, Daniel; Shrestha, Suyog; Shulga, Evgeny; Shupe, Michael; Shushkevich, Stanislav; Sicho, Petr; Sidiropoulou, Ourania; Sidorov, Dmitri; Sidoti, Antonio; Siegert, Frank; Sijacki, Djordje; Silva, José; Silver, Yiftah; Silverstein, Daniel; Silverstein, Samuel; Simak, Vladislav; Simard, Olivier; Simic, Ljiljana; Simion, Stefan; Simioni, Eduard; Simmons, Brinick; Simoniello, Rosa; Simonyan, Margar; Sinervo, Pekka; Sinev, Nikolai; Sipica, Valentin; Siragusa, Giovanni; Sircar, Anirvan; Sisakyan, Alexei; Sivoklokov, Serguei; Sjölin, Jörgen; Sjursen, Therese; Skottowe, Hugh Philip; Skovpen, Kirill; Skubic, Patrick; Slater, Mark; Slavicek, Tomas; Sliwa, Krzysztof; Smakhtin, Vladimir; Smart, Ben; Smestad, Lillian; Smirnov, Sergei; Smirnov, Yury; Smirnova, Lidia; Smirnova, Oxana; Smith, Kenway; Smizanska, Maria; Smolek, Karel; Snesarev, Andrei; Snidero, Giacomo; Snyder, Scott; Sobie, Randall; Socher, Felix; Soffer, Abner; Soh, Dart-yin; Solans, Carlos; Solar, Michael; Solc, Jaroslav; Soldatov, Evgeny; Soldevila, Urmila; Solfaroli Camillocci, Elena; Solodkov, Alexander; Soloshenko, Alexei; Solovyanov, Oleg; Solovyev, Victor; Sommer, Philip; Song, Hong Ye; Soni, Nitesh; Sood, Alexander; Sopczak, Andre; Sopko, Bruno; Sopko, Vit; Sorin, Veronica; Sosebee, Mark; Soualah, Rachik; Soueid, Paul; Soukharev, Andrey; South, David; Spagnolo, Stefania; Spanò, Francesco; Spearman, William Robert; Spettel, Fabian; Spighi, Roberto; Spigo, Giancarlo; Spousta, Martin; Spreitzer, Teresa; Spurlock, Barry; St Denis, Richard Dante; Staerz, Steffen; Stahlman, Jonathan; Stamen, Rainer; Stanecka, Ewa; Stanek, Robert; Stanescu, Cristian; Stanescu-Bellu, Madalina; Stanitzki, Marcel Michael; Stapnes, Steinar; Starchenko, Evgeny; Stark, Jan; Staroba, Pavel; Starovoitov, Pavel; Staszewski, Rafal; Stavina, Pavel; Steinberg, Peter; Stelzer, Bernd; Stelzer, Harald Joerg; Stelzer-Chilton, Oliver; Stenzel, Hasko; Stern, Sebastian; Stewart, Graeme; Stillings, Jan Andre; Stockton, Mark; Stoebe, Michael; Stoicea, Gabriel; Stolte, Philipp; Stonjek, Stefan; Stradling, Alden; Straessner, Arno; Stramaglia, Maria Elena; Strandberg, Jonas; Strandberg, Sara; Strandlie, Are; Strauss, Emanuel; Strauss, Michael; Strizenec, Pavol; Ströhmer, Raimund; Strom, David; Stroynowski, Ryszard; Stucci, Stefania Antonia; Stugu, Bjarne; Styles, Nicholas Adam; Su, Dong; Su, Jun; Subramania, Halasya Siva; Subramaniam, Rajivalochan; Succurro, Antonella; Sugaya, Yorihito; Suhr, Chad; Suk, Michal; Sulin, Vladimir; Sultansoy, Saleh; Sumida, Toshi; Sun, Xiaohu; Sundermann, Jan Erik; Suruliz, Kerim; Susinno, Giancarlo; Sutton, Mark; Suzuki, Yu; Svatos, Michal; Swedish, Stephen; Swiatlowski, Maximilian; Sykora, Ivan; Sykora, Tomas; Ta, Duc; Taccini, Cecilia; Tackmann, Kerstin; Taenzer, Joe; Taffard, Anyes; Tafirout, Reda; Taiblum, Nimrod; Takahashi, Yuta; Takai, Helio; Takashima, Ryuichi; Takeda, Hiroshi; Takeshita, Tohru; Takubo, Yosuke; Talby, Mossadek; Talyshev, Alexey; Tam, Jason; Tan, Kong Guan; Tanaka, Junichi; Tanaka, Reisaburo; Tanaka, Satoshi; Tanaka, Shuji; Tanasijczuk, Andres Jorge; Tannenwald, Benjamin Bordy; Tannoury, Nancy; Tapprogge, Stefan; Tarem, Shlomit; Tarrade, Fabien; Tartarelli, Giuseppe Francesco; Tas, Petr; Tasevsky, Marek; Tashiro, Takuya; Tassi, Enrico; Tavares Delgado, Ademar; Tayalati, Yahya; Taylor, Frank; Taylor, Geoffrey; Taylor, Wendy; Teischinger, Florian Alfred; Teixeira Dias Castanheira, Matilde; Teixeira-Dias, Pedro; Temming, Kim Katrin; Ten Kate, Herman; Teng, Ping-Kun; Teoh, Jia Jian; Terada, Susumu; Terashi, Koji; Terron, Juan; Terzo, Stefano; Testa, Marianna; Teuscher, Richard; Therhaag, Jan; Theveneaux-Pelzer, Timothée; Thomas, Juergen; Thomas-Wilsker, Joshuha; Thompson, Emily; Thompson, Paul; Thompson, Peter; Thompson, Stan; Thomsen, Lotte Ansgaard; Thomson, Evelyn; Thomson, Mark; Thong, Wai Meng; Thun, Rudolf; Tian, Feng; Tibbetts, Mark James; Tikhomirov, Vladimir; Tikhonov, Yury; Timoshenko, Sergey; Tiouchichine, Elodie; Tipton, Paul; Tisserant, Sylvain; Todorov, Theodore; Todorova-Nova, Sharka; Toggerson, Brokk; Tojo, Junji; Tokár, Stanislav; Tokushuku, Katsuo; Tollefson, Kirsten; Tomlinson, Lee; Tomoto, Makoto; Tompkins, Lauren; Toms, Konstantin; Topilin, Nikolai; Torrence, Eric; Torres, Heberth; Torró Pastor, Emma; Toth, Jozsef; Touchard, Francois; Tovey, Daniel; Tran, Huong Lan; Trefzger, Thomas; Tremblet, Louis; Tricoli, Alessandro; Trigger, Isabel Marian; Trincaz-Duvoid, Sophie; Tripiana, Martin; Triplett, Nathan; Trischuk, William; Trocmé, Benjamin; Troncon, Clara; Trottier-McDonald, Michel; Trovatelli, Monica; True, Patrick; Trzebinski, Maciej; Trzupek, Adam; Tsarouchas, Charilaos; Tseng, Jeffrey; Tsiareshka, Pavel; Tsionou, Dimitra; Tsipolitis, Georgios; Tsirintanis, Nikolaos; Tsiskaridze, Shota; Tsiskaridze, Vakhtang; Tskhadadze, Edisher; Tsukerman, Ilya; Tsulaia, Vakhtang; Tsuno, Soshi; Tsybychev, Dmitri; Tudorache, Alexandra; Tudorache, Valentina; Tuna, Alexander Naip; Tupputi, Salvatore; Turchikhin, Semen; Turecek, Daniel; Turk Cakir, Ilkay; Turra, Ruggero; Tuts, Michael; Tykhonov, Andrii; Tylmad, Maja; Tyndel, Mike; Uchida, Kirika; Ueda, Ikuo; Ueno, Ryuichi; Ughetto, Michael; Ugland, Maren; Uhlenbrock, Mathias; Ukegawa, Fumihiko; Unal, Guillaume; Undrus, Alexander; Unel, Gokhan; Ungaro, Francesca; Unno, Yoshinobu; Urbaniec, Dustin; Urquijo, Phillip; Usai, Giulio; Usanova, Anna; Vacavant, Laurent; Vacek, Vaclav; Vachon, Brigitte; Valencic, Nika; Valentinetti, Sara; Valero, Alberto; Valery, Loic; Valkar, Stefan; Valladolid Gallego, Eva; Vallecorsa, Sofia; Valls Ferrer, Juan Antonio; Van Den Wollenberg, Wouter; Van Der Deijl, Pieter; van der Geer, Rogier; van der Graaf, Harry; Van Der Leeuw, Robin; van der Ster, Daniel; van Eldik, Niels; van Gemmeren, Peter; Van Nieuwkoop, Jacobus; van Vulpen, Ivo; van Woerden, Marius Cornelis; Vanadia, Marco; Vandelli, Wainer; Vanguri, Rami; Vaniachine, Alexandre; Vankov, Peter; Vannucci, Francois; Vardanyan, Gagik; Vari, Riccardo; Varnes, Erich; Varol, Tulin; Varouchas, Dimitris; Vartapetian, Armen; Varvell, Kevin; Vazeille, Francois; Vazquez Schroeder, Tamara; Veatch, Jason; Veloso, Filipe; Veneziano, Stefano; Ventura, Andrea; Ventura, Daniel; Venturi, Manuela; Venturi, Nicola; Venturini, Alessio; Vercesi, Valerio; Verducci, Monica; Verkerke, Wouter; Vermeulen, Jos; Vest, Anja; Vetterli, Michel; Viazlo, Oleksandr; Vichou, Irene; Vickey, Trevor; Vickey Boeriu, Oana Elena; Viehhauser, Georg; Viel, Simon; Vigne, Ralph; Villa, Mauro; Villaplana Perez, Miguel; Vilucchi, Elisabetta; Vincter, Manuella; Vinogradov, Vladimir; Virzi, Joseph; Vivarelli, Iacopo; Vives Vaque, Francesc; Vlachos, Sotirios; Vladoiu, Dan; Vlasak, Michal; Vogel, Adrian; Vogel, Marcelo; Vokac, Petr; Volpi, Guido; Volpi, Matteo; von der Schmitt, Hans; von Radziewski, Holger; von Toerne, Eckhard; Vorobel, Vit; Vorobev, Konstantin; Vos, Marcel; Voss, Rudiger; Vossebeld, Joost; Vranjes, Nenad; Vranjes Milosavljevic, Marija; Vrba, Vaclav; Vreeswijk, Marcel; Vu Anh, Tuan; Vuillermet, Raphael; Vukotic, Ilija; Vykydal, Zdenek; Wagner, Peter; Wagner, Wolfgang; Wahlberg, Hernan; Wahrmund, Sebastian; Wakabayashi, Jun; Walder, James; Walker, Rodney; Walkowiak, Wolfgang; Wall, Richard; Waller, Peter; Walsh, Brian; Wang, Chao; Wang, Chiho; Wang, Fuquan; Wang, Haichen; Wang, Hulin; Wang, Jike; Wang, Jin; Wang, Kuhan; Wang, Rui; Wang, Song-Ming; Wang, Tan; Wang, Xiaoxiao; Wanotayaroj, Chaowaroj; Warburton, Andreas; Ward, Patricia; Wardrope, David Robert; Warsinsky, Markus; Washbrook, Andrew; Wasicki, Christoph; Watkins, Peter; Watson, Alan; Watson, Ian; Watson, Miriam; Watts, Gordon; Watts, Stephen; Waugh, Ben; Webb, Samuel; Weber, Michele; Weber, Stefan Wolf; Webster, Jordan S; Weidberg, Anthony; Weigell, Philipp; Weinert, Benjamin; Weingarten, Jens; Weiser, Christian; Weits, Hartger; Wells, Phillippa; Wenaus, Torre; Wendland, Dennis; Weng, Zhili; Wengler, Thorsten; Wenig, Siegfried; Wermes, Norbert; Werner, Matthias; Werner, Per; Wessels, Martin; Wetter, Jeffrey; Whalen, Kathleen; White, Andrew; White, Martin; White, Ryan; White, Sebastian; Whiteson, Daniel; Wicke, Daniel; Wickens, Fred; Wiedenmann, Werner; Wielers, Monika; Wienemann, Peter; Wiglesworth, Craig; Wiik-Fuchs, Liv Antje Mari; Wijeratne, Peter Alexander; Wildauer, Andreas; Wildt, Martin Andre; Wilkens, Henric George; Will, Jonas Zacharias; Williams, Hugh; Williams, Sarah; Willis, Christopher; Willocq, Stephane; Wilson, Alan; Wilson, John; Wingerter-Seez, Isabelle; Winklmeier, Frank; Winter, Benedict Tobias; Wittgen, Matthias; Wittig, Tobias; Wittkowski, Josephine; Wollstadt, Simon Jakob; Wolter, Marcin Wladyslaw; Wolters, Helmut; Wosiek, Barbara; Wotschack, Jorg; Woudstra, Martin; Wozniak, Krzysztof; Wright, Michael; Wu, Mengqing; Wu, Sau Lan; Wu, Xin; Wu, Yusheng; Wulf, Evan; Wyatt, Terry Richard; Wynne, Benjamin; Xella, Stefania; Xiao, Meng; Xu, Da; Xu, Lailin; Yabsley, Bruce; Yacoob, Sahal; Yamada, Miho; Yamaguchi, Hiroshi; Yamaguchi, Yohei; Yamamoto, Akira; Yamamoto, Kyoko; Yamamoto, Shimpei; Yamamura, Taiki; Yamanaka, Takashi; Yamauchi, Katsuya; Yamazaki, Yuji; Yan, Zhen; Yang, Haijun; Yang, Hongtao; Yang, Un-Ki; Yang, Yi; Yanush, Serguei; Yao, Liwen; Yao, Weiming; Yasu, Yoshiji; Yatsenko, Elena; Yau Wong, Kaven Henry; Ye, Jingbo; Ye, Shuwei; Yen, Andy L; Yildirim, Eda; Yilmaz, Metin; Yoosoofmiya, Reza; Yorita, Kohei; Yoshida, Rikutaro; Yoshihara, Keisuke; Young, Charles; Young, Christopher John; Youssef, Saul; Yu, David Ren-Hwa; Yu, Jaehoon; Yu, Jiaming; Yu, Jie; Yuan, Li; Yurkewicz, Adam; Yusuff, Imran; Zabinski, Bartlomiej; Zaidan, Remi; Zaitsev, Alexander; Zaman, Aungshuman; Zambito, Stefano; Zanello, Lucia; Zanzi, Daniele; Zeitnitz, Christian; Zeman, Martin; Zemla, Andrzej; Zengel, Keith; Zenin, Oleg; Ženiš, Tibor; Zerwas, Dirk; Zevi della Porta, Giovanni; Zhang, Dongliang; Zhang, Fangzhou; Zhang, Huaqiao; Zhang, Jinlong; Zhang, Lei; Zhang, Xueyao; Zhang, Zhiqing; Zhao, Zhengguo; Zhemchugov, Alexey; Zhong, Jiahang; Zhou, Bing; Zhou, Lei; Zhou, Ning; Zhu, Cheng Guang; Zhu, Hongbo; Zhu, Junjie; Zhu, Yingchun; Zhuang, Xuai; Zhukov, Konstantin; Zibell, Andre; Zieminska, Daria; Zimine, Nikolai; Zimmermann, Christoph; Zimmermann, Robert; Zimmermann, Simone; Zimmermann, Stephanie; Zinonos, Zinonas; Ziolkowski, Michael; Zobernig, Georg; Zoccoli, Antonio; zur Nedden, Martin; Zurzolo, Giovanni; Zutshi, Vishnu; Zwalinski, Lukasz

2014-09-15

A novel technique to identify and split clusters created by multiple charged particles in the ATLAS pixel detector using a set of artificial neural networks is presented. Such merged clusters are a common feature of tracks originating from highly energetic objects, such as jets. Neural networks are trained using Monte Carlo samples produced with a detailed detector simulation. This technique replaces the former clustering approach based on a connected component analysis and charge interpolation. The performance of the neural network splitting technique is quantified using data from proton-proton collisions at the LHC collected by the ATLAS detector in 2011 and from Monte Carlo simulations. This technique reduces the number of clusters shared between tracks in highly energetic jets by up to a factor of three. It also provides more precise position and error estimates of the clusters in both the transverse and longitudinal impact parameter resolution.

ATLAS construction status

International Nuclear Information System (INIS)

Jenni, P.

2006-01-01

The ATLAS detector is being constructed at the LHC, in view of a data-taking startup in 2007. This report concentrates on the progress and the technical challenges of the detector construction, and summarizes the status of the work as of August 2004. The project is on track to allow the highly motivated ATLAS Collaboration to enter into a new exploratory domain of high-energy physics in 2007. (author)

Two-stage atlas subset selection in multi-atlas based image segmentation

Energy Technology Data Exchange (ETDEWEB)

Zhao, Tingting, E-mail: tingtingzhao@mednet.ucla.edu; Ruan, Dan, E-mail: druan@mednet.ucla.edu [The Department of Radiation Oncology, University of California, Los Angeles, California 90095 (United States)

2015-06-15

Purpose: Fast growing access to large databases and cloud stored data presents a unique opportunity for multi-atlas based image segmentation and also presents challenges in heterogeneous atlas quality and computation burden. This work aims to develop a novel two-stage method tailored to the special needs in the face of large atlas collection with varied quality, so that high-accuracy segmentation can be achieved with low computational cost. Methods: An atlas subset selection scheme is proposed to substitute a significant portion of the computationally expensive full-fledged registration in the conventional scheme with a low-cost alternative. More specifically, the authors introduce a two-stage atlas subset selection method. In the first stage, an augmented subset is obtained based on a low-cost registration configuration and a preliminary relevance metric; in the second stage, the subset is further narrowed down to a fusion set of desired size, based on full-fledged registration and a refined relevance metric. An inference model is developed to characterize the relationship between the preliminary and refined relevance metrics, and a proper augmented subset size is derived to ensure that the desired atlases survive the preliminary selection with high probability. Results: The performance of the proposed scheme has been assessed with cross validation based on two clinical datasets consisting of manually segmented prostate and brain magnetic resonance images, respectively. The proposed scheme demonstrates comparable end-to-end segmentation performance as the conventional single-stage selection method, but with significant computation reduction. Compared with the alternative computation reduction method, their scheme improves the mean and medium Dice similarity coefficient value from (0.74, 0.78) to (0.83, 0.85) and from (0.82, 0.84) to (0.95, 0.95) for prostate and corpus callosum segmentation, respectively, with statistical significance. Conclusions: The authors

Two-stage atlas subset selection in multi-atlas based image segmentation.

Science.gov (United States)

Zhao, Tingting; Ruan, Dan

2015-06-01

Fast growing access to large databases and cloud stored data presents a unique opportunity for multi-atlas based image segmentation and also presents challenges in heterogeneous atlas quality and computation burden. This work aims to develop a novel two-stage method tailored to the special needs in the face of large atlas collection with varied quality, so that high-accuracy segmentation can be achieved with low computational cost. An atlas subset selection scheme is proposed to substitute a significant portion of the computationally expensive full-fledged registration in the conventional scheme with a low-cost alternative. More specifically, the authors introduce a two-stage atlas subset selection method. In the first stage, an augmented subset is obtained based on a low-cost registration configuration and a preliminary relevance metric; in the second stage, the subset is further narrowed down to a fusion set of desired size, based on full-fledged registration and a refined relevance metric. An inference model is developed to characterize the relationship between the preliminary and refined relevance metrics, and a proper augmented subset size is derived to ensure that the desired atlases survive the preliminary selection with high probability. The performance of the proposed scheme has been assessed with cross validation based on two clinical datasets consisting of manually segmented prostate and brain magnetic resonance images, respectively. The proposed scheme demonstrates comparable end-to-end segmentation performance as the conventional single-stage selection method, but with significant computation reduction. Compared with the alternative computation reduction method, their scheme improves the mean and medium Dice similarity coefficient value from (0.74, 0.78) to (0.83, 0.85) and from (0.82, 0.84) to (0.95, 0.95) for prostate and corpus callosum segmentation, respectively, with statistical significance. The authors have developed a novel two-stage atlas

Two-stage atlas subset selection in multi-atlas based image segmentation

International Nuclear Information System (INIS)

Zhao, Tingting; Ruan, Dan

2015-01-01

Purpose: Fast growing access to large databases and cloud stored data presents a unique opportunity for multi-atlas based image segmentation and also presents challenges in heterogeneous atlas quality and computation burden. This work aims to develop a novel two-stage method tailored to the special needs in the face of large atlas collection with varied quality, so that high-accuracy segmentation can be achieved with low computational cost. Methods: An atlas subset selection scheme is proposed to substitute a significant portion of the computationally expensive full-fledged registration in the conventional scheme with a low-cost alternative. More specifically, the authors introduce a two-stage atlas subset selection method. In the first stage, an augmented subset is obtained based on a low-cost registration configuration and a preliminary relevance metric; in the second stage, the subset is further narrowed down to a fusion set of desired size, based on full-fledged registration and a refined relevance metric. An inference model is developed to characterize the relationship between the preliminary and refined relevance metrics, and a proper augmented subset size is derived to ensure that the desired atlases survive the preliminary selection with high probability. Results: The performance of the proposed scheme has been assessed with cross validation based on two clinical datasets consisting of manually segmented prostate and brain magnetic resonance images, respectively. The proposed scheme demonstrates comparable end-to-end segmentation performance as the conventional single-stage selection method, but with significant computation reduction. Compared with the alternative computation reduction method, their scheme improves the mean and medium Dice similarity coefficient value from (0.74, 0.78) to (0.83, 0.85) and from (0.82, 0.84) to (0.95, 0.95) for prostate and corpus callosum segmentation, respectively, with statistical significance. Conclusions: The authors

SU-E-J-128: Two-Stage Atlas Selection in Multi-Atlas-Based Image Segmentation

International Nuclear Information System (INIS)

Zhao, T; Ruan, D

2015-01-01

Purpose: In the new era of big data, multi-atlas-based image segmentation is challenged by heterogeneous atlas quality and high computation burden from extensive atlas collection, demanding efficient identification of the most relevant atlases. This study aims to develop a two-stage atlas selection scheme to achieve computational economy with performance guarantee. Methods: We develop a low-cost fusion set selection scheme by introducing a preliminary selection to trim full atlas collection into an augmented subset, alleviating the need for extensive full-fledged registrations. More specifically, fusion set selection is performed in two successive steps: preliminary selection and refinement. An augmented subset is first roughly selected from the whole atlas collection with a simple registration scheme and the corresponding preliminary relevance metric; the augmented subset is further refined into the desired fusion set size, using full-fledged registration and the associated relevance metric. The main novelty of this work is the introduction of an inference model to relate the preliminary and refined relevance metrics, based on which the augmented subset size is rigorously derived to ensure the desired atlases survive the preliminary selection with high probability. Results: The performance and complexity of the proposed two-stage atlas selection method were assessed using a collection of 30 prostate MR images. It achieved comparable segmentation accuracy as the conventional one-stage method with full-fledged registration, but significantly reduced computation time to 1/3 (from 30.82 to 11.04 min per segmentation). Compared with alternative one-stage cost-saving approach, the proposed scheme yielded superior performance with mean and medium DSC of (0.83, 0.85) compared to (0.74, 0.78). Conclusion: This work has developed a model-guided two-stage atlas selection scheme to achieve significant cost reduction while guaranteeing high segmentation accuracy. The benefit

The ATLAS Liquid Argon Electromagnetic Calorimeter Construction, commissioning and elected test beam results

CERN Document Server

Hervás, L

2004-01-01

The construction of the ATLAS Liquid Argon Electromagnetic Calorimeter has been completed and commissioning is in progress to prepare the cryostats for lowering into the ATLAS pit. After a brief description of the detector, its construction and readout electronics, this paper summarizes results of quality checks (electrical, connectivity) carried out during the integration of the calorimeter wheels into the cryostats. We present also selected results of its performance, such as linearity, energy resolution, timing resolution, uniformity of the energy response, obtained in beam tests with several series modules. 16 Refs.

Determination of the Jet Energy Scale and the Jet Energy Resolution in the 20fb-1 of data collected by the ATLAS detector in 2012

CERN Document Server

Dattagupta, A; The ATLAS collaboration

2014-01-01

Jets are manifestations of quarks and gluons, in the form of sprays of hadrons, in High Energy Physics experiments. For the ATLAS detector, these objects are constructed using three-dimensional topological clusters, built from the calorimeter cells of the detector, surrounding a seed cell. This seed cell has an energy significance above 4 sigma noise. Since jets have a high production rate in the ATLAS detector, an accurate measurement of their properties is essential for Physics analyses, aiming to measure Standard Model processes, and looking for new Physics. A summary of the calibration algorithms for the reconstruction of jets in ATLAS and it's validation and calibration in data are presented here.

Atlas-driven scan planning for high-resolution Micro-SPECT data acquisition based on multi-view photographs : A pilot study

NARCIS (Netherlands)

Baiker, M.; Vastenhouw, B.; Branderhorst, W.; Reiber, J.H.C.; Beekman, F.; Lelieveldt, B.P.F.

2009-01-01

Highly focused Micro-SPECT scanners enable the acquisition of functional small animal data with very high-resolution. To acquire a maximum of emitted photons from a specific structure of interest and at the same time minimize the required acquisition time, typically only a small subvolume of the

Atlas-driven scan planning for high-resolution micro-SPECT data acquisition based on multi-vew photographs : A pilot study

NARCIS (Netherlands)

Baiker, M.; Vastenhouw, B.; Branderhorst, S.W.; Reiber, J.H.C.; Beekman, F.J.; Lelieveld, B.P.F.

2009-01-01

Highly focused Micro-SPECT scanners enable the acquisition of functional small animal data with very high-resolution. To acquire a maximum of emitted photons from a specific structure of interest and at the same time minimize the required acquisition time, typically only a small subvolume of the

Future ATLAS Higgs Studies

CERN Document Server

Smart, Ben; The ATLAS collaboration

2017-01-01

The High-Luminosity LHC will prove a challenging environment to work in, with for example $=200$ expected. It will however also provide great opportunities for advancing studies of the Higgs boson. The ATLAS detector will be upgraded, and Higgs prospects analyses have been performed to assess the reach of ATLAS Higgs studies in the HL-LHC era. These analyses are presented, as are Run-2 ATLAS di-Higgs analyses for comparison.

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

Directory of Open Access Journals (Sweden)

Severin Andrew J

2010-08-01

Full Text Available Abstract Background Next generation sequencing is transforming our understanding of transcriptomes. It can determine the expression level of transcripts with a dynamic range of over six orders of magnitude from multiple tissues, developmental stages or conditions. Patterns of gene expression provide insight into functions of genes with unknown annotation. Results The RNA Seq-Atlas presented here provides a record of high-resolution gene expression in a set of fourteen diverse tissues. Hierarchical clustering of transcriptional profiles for these tissues suggests three clades with similar profiles: aerial, underground and seed tissues. We also investigate the relationship between gene structure and gene expression and find a correlation between gene length and expression. Additionally, we find dramatic tissue-specific gene expression of both the most highly-expressed genes and the genes specific to legumes in seed development and nodule tissues. Analysis of the gene expression profiles of over 2,000 genes with preferential gene expression in seed suggests there are more than 177 genes with functional roles that are involved in the economically important seed filling process. Finally, the Seq-atlas also provides a means of evaluating existing gene model annotations for the Glycine max genome. Conclusions This RNA-Seq atlas extends the analyses of previous gene expression atlases performed using Affymetrix GeneChip technology and provides an example of new methods to accommodate the increase in transcriptome data obtained from next generation sequencing. Data contained within this RNA-Seq atlas of Glycine max can be explored at http://www.soybase.org/soyseq.

7.0 tesla MRI brain white matter atlas. 2. ed.

International Nuclear Information System (INIS)

Cho, Zang-Hee

2015-01-01

Depicts the visualization of brain white matter with the latest 7.0 T MRI and TDI techniques. Represents a useful addition to brain research and clinical settings, such as the Human Connectome Project. Contains a wealth of exquisitely detailed color images. The introduction of techniques that permit visualization of the human nervous system is one of the foremost advances in neuroscience and brain-related research. Among the most recent significant developments in this respect are ultra-high field MRI and the image post-processing technique known as track density imaging (TDI). It is these techniques (including super-resolution TDI) which represent the two major components of 7.0 Tesla MRI - Brain White Matter Atlas. This second edition of the atlas has been revised and updated to fully reflect current application of these technological advancements in order to visualize the nervous system and the brain with the finest resolution and sensitivity. Exquisitely detailed color images offer neuroscientists, neurologists, and neurosurgeons a superb resource that will be of value both for the purpose of research and for the treatment of common brain diseases such as Alzheimer's disease and multiple sclerosis.

7.0 tesla MRI brain white matter atlas. 2. ed.

Energy Technology Data Exchange (ETDEWEB)

Cho, Zang-Hee (ed.) [Gachon Univ., Incheon (Korea, Republic of). Neuroscience Research Institute

2015-04-01

Depicts the visualization of brain white matter with the latest 7.0 T MRI and TDI techniques. Represents a useful addition to brain research and clinical settings, such as the Human Connectome Project. Contains a wealth of exquisitely detailed color images. The introduction of techniques that permit visualization of the human nervous system is one of the foremost advances in neuroscience and brain-related research. Among the most recent significant developments in this respect are ultra-high field MRI and the image post-processing technique known as track density imaging (TDI). It is these techniques (including super-resolution TDI) which represent the two major components of 7.0 Tesla MRI - Brain White Matter Atlas. This second edition of the atlas has been revised and updated to fully reflect current application of these technological advancements in order to visualize the nervous system and the brain with the finest resolution and sensitivity. Exquisitely detailed color images offer neuroscientists, neurologists, and neurosurgeons a superb resource that will be of value both for the purpose of research and for the treatment of common brain diseases such as Alzheimer's disease and multiple sclerosis.

Cartea de Colorat a Experimentului ATLAS - ATLAS Experiment Colouring Book in Romanian

CERN Multimedia

Anthony, Katarina

2018-01-01

Language: Romanian - The ATLAS Experiment Colouring Book is a free-to-download educational book, ideal for kids aged 5-9. It aims to introduce children to the field of High-Energy Physics, as well as the work being carried out by the ATLAS Collaboration. Limba: Română - Cartea de Colorat a Experimentului ATLAS este o carte educativă gratuită, ideală pentru copiii cu vârsta cuprinsă între 5-9 ani. Scopul său este de a introduce copii în domeniul fizicii de înaltă energie, precum și activitatea desfășurată de colaborarea ATLAS.

High-resolution spectroscopy of jet-cooled CH{sub 5}{sup +}: Progress

Energy Technology Data Exchange (ETDEWEB)

Savage, C.; Dong, F.; Nesbitt, D. J. [JILA, University of Colorado and National Institute of Standards and Technology, and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0440 (United States)

2015-01-22

Protonated methane (CH{sub 5}{sup +}) is thought to be a highly abundant molecular ion in interstellar medium, as well as a potentially bright μwave- mm wave emitter that could serve as a tracer for methane. This paper describes progress and first successful efforts to obtain a high resolution, supersonically cooled spectrum of CH{sub 5}{sup +} in the 2900-3100 cm{sup −1} region, formed in a slit supersonic discharge at low jet temperatures and with sub-Doppler resolution. Short term precision in frequency measurement (< 5 MHz on an hour time scale) is obtained from a thermally controlled optical transfer cavity servoloop locked onto a frequency stabilized HeNe laser. Long term precision (< 20 MHz day-to-day) due to pressure, temperature and humidity dependent index of refraction effects in the optical transfer cavity is also present and discussed.

High-resolution model for the simulation of the activity distribution and radiation field at the German FRJ-2 research reactor

International Nuclear Information System (INIS)

Winter, D.; Haeussler, A.; Abbasi, F.; Simons, F.; Nabbi, R.; Thomauske, B.

2013-01-01

F or the decommissioning of nuclear facilities in Germany, activity and dose rate atlases (ADAs) are required for the approval of the domestic regulatory authority. Thus, high detailed modeling efforts are demanded in order to optimize the quantification and the characterization of nuclear waste as well as to realize optimum radiation protection. For the generation of ADAs, computer codes based on the Monte-Carlo method are increasingly employed because of their potential for high resolution simulation of the neutron and gamma transport for activity and dose rate predictions, respectively. However, the demand on the modeling effort and the simulation time increases with the size and the complexity of the whole model that becomes a limiting factor. For instance, the German FRJ-2 research reactor consisting of a complex reactor core, the graphite reflector, and the adjacent thermal and biological shielding structures represents such a case. For the solving of this drawback, various techniques such as variance reduction methods are applied. A further simple but effective approach is the modeling of the regions of interest with appropriate boundary conditions e.g. surface source or reflective surfaces. In the framework of the existing research a high sophisticated simulation tool is developed which is characterized by: - CAD-based model generation for Monte-Carlo transport simulations; - Production and 3D visualization of high resolution activity and dose rate atlases; - Application of coupling routines and interface structures for optimum and automated simulations. The whole simulation system is based on the Monte-Carlo code MCNP5 and the depletion/activation code ORIGEN2. The numerical and computational efficiency of the proposed methods is discussed in this paper on the basis of the simulation and CAD-based model of the FRJ-2 research reactor with emphasis on the effect of variance reduction methods. (orig.)

High-resolution model for the simulation of the activity distribution and radiation field at the German FRJ-2 research reactor

Energy Technology Data Exchange (ETDEWEB)

Winter, D.; Haeussler, A.; Abbasi, F.; Simons, F.; Nabbi, R.; Thomauske, B. [RWTH Aachen Univ. (Germany). Inst. of Nuclear Fuel Cycle; Damm, G. [Research Center Juelich (Germany)

2013-11-15

F or the decommissioning of nuclear facilities in Germany, activity and dose rate atlases (ADAs) are required for the approval of the domestic regulatory authority. Thus, high detailed modeling efforts are demanded in order to optimize the quantification and the characterization of nuclear waste as well as to realize optimum radiation protection. For the generation of ADAs, computer codes based on the Monte-Carlo method are increasingly employed because of their potential for high resolution simulation of the neutron and gamma transport for activity and dose rate predictions, respectively. However, the demand on the modeling effort and the simulation time increases with the size and the complexity of the whole model that becomes a limiting factor. For instance, the German FRJ-2 research reactor consisting of a complex reactor core, the graphite reflector, and the adjacent thermal and biological shielding structures represents such a case. For the solving of this drawback, various techniques such as variance reduction methods are applied. A further simple but effective approach is the modeling of the regions of interest with appropriate boundary conditions e.g. surface source or reflective surfaces. In the framework of the existing research a high sophisticated simulation tool is developed which is characterized by: - CAD-based model generation for Monte-Carlo transport simulations; - Production and 3D visualization of high resolution activity and dose rate atlases; - Application of coupling routines and interface structures for optimum and automated simulations. The whole simulation system is based on the Monte-Carlo code MCNP5 and the depletion/activation code ORIGEN2. The numerical and computational efficiency of the proposed methods is discussed in this paper on the basis of the simulation and CAD-based model of the FRJ-2 research reactor with emphasis on the effect of variance reduction methods. (orig.)

The Numerical Wind Atlas - the KAMM/WAsP Method

Energy Technology Data Exchange (ETDEWEB)

Frank, H P; Rathmann, O; Mortensen, N G; Landberg, L

2001-06-01

The method of combining the Karlsruhe Atmospheric Mesoscale Model, KAMM, with the Wind Atlas Analysis and Application Program, WAsP, to make local predictions of the wind resource is presented. It combines the advantages of meso-scale modeling - overview over a big region and use of global data bases - with the local prediction capacity of the small-scale model WAsP. Results are presented for Denmark, Ireland, Northern Portugal and Galicia, and the Faroe Islands. Wind atlas files were calculated from wind data simulated with the meso-scale model using model grids with a resolution of 2.5, 5, and 10 km. Using these wind atlas files in WAsP the local prediction of the mean wind does not depend on the grid resolution of the meso-scale model. The local predictions combining KAMM and WAsP are much better than simple interpolation of the wind simulated by KAMM. In addition an investigation was made on the dependence of wind atlas data on the size of WAsP-maps. It is recommended that a topographic map around a site should extend 10 km out from it. If there is a major roughness change like a coast line further away in a frequent wind direction this should be included at even greater distances, perhaps up to 20 km away.

Berkeley High-Resolution Ball

International Nuclear Information System (INIS)

Diamond, R.M.

1984-10-01

Criteria for a high-resolution γ-ray system are discussed. Desirable properties are high resolution, good response function, and moderate solid angle so as to achieve not only double- but triple-coincidences with good statistics. The Berkeley High-Resolution Ball involved the first use of bismuth germanate (BGO) for anti-Compton shield for Ge detectors. The resulting compact shield permitted rather close packing of 21 detectors around a target. In addition, a small central BGO ball gives the total γ-ray energy and multiplicity, as well as the angular pattern of the γ rays. The 21-detector array is nearly complete, and the central ball has been designed, but not yet constructed. First results taken with 9 detector modules are shown for the nucleus 156 Er. The complex decay scheme indicates a transition from collective rotation (prolate shape) to single- particle states (possibly oblate) near spin 30 h, and has other interesting features

High-resolution photoacoustic tomography of resting-state functional connectivity in the mouse brain

Science.gov (United States)

Nasiriavanaki, Mohammadreza; Xia, Jun; Wan, Hanlin; Bauer, Adam Quentin; Culver, Joseph P.; Wang, Lihong V.

2014-01-01

The increasing use of mouse models for human brain disease studies presents an emerging need for a new functional imaging modality. Using optical excitation and acoustic detection, we developed a functional connectivity photoacoustic tomography system, which allows noninvasive imaging of resting-state functional connectivity in the mouse brain, with a large field of view and a high spatial resolution. Bilateral correlations were observed in eight functional regions, including the olfactory bulb, limbic, parietal, somatosensory, retrosplenial, visual, motor, and temporal regions, as well as in several subregions. The borders and locations of these regions agreed well with the Paxinos mouse brain atlas. By subjecting the mouse to alternating hyperoxic and hypoxic conditions, strong and weak functional connectivities were observed, respectively. In addition to connectivity images, vascular images were simultaneously acquired. These studies show that functional connectivity photoacoustic tomography is a promising, noninvasive technique for functional imaging of the mouse brain. PMID:24367107

The ATLAS muon trigger: Experience and performance in the first 3 years of LHC pp runs

International Nuclear Information System (INIS)

Ventura, Andrea

2013-01-01

The ATLAS experiment at CERN's Large Hadron Collider (LHC) deploys a three-level processing scheme for the trigger system. The Level-1 muon trigger system gets its input from fast muon trigger detectors. Sector logic boards select muon candidates, which are passed via an interface board to the central trigger processor and then to the High Level Trigger (HLT). The muon HLT is purely software based and encompasses a Level-2 trigger followed by an event filter for a staged trigger approach. It has access to the data of the precision muon detectors and other detector elements to refine the muon hypothesis. The ATLAS experiment has taken data with high efficiency continuously over entire running periods from 2010 to 2012, for which sophisticated triggers to guard the highest physics output while reducing effectively the event rate were mandatory. The ATLAS muon trigger has successfully adapted to this challenging environment. The selection strategy has been optimized for the various physics analyses involving muons in the final state. This work briefly summarizes these three years of experience in the ATLAS muon trigger and reports about efficiency, resolution, and general performance of the muon trigger

Soft and hard probes of high-temperature matter with the ATLAS experiment

CERN Multimedia

CERN. Geneva

2014-01-01

Relativistic heavy ion collisions provide an experimental setting for studying a variety of novel QCD phenomena. In particular, they enable the study of QCD at high temperatures and provide accessibility to a medium, the Quark-Gluon Plasma (QGP), containing a high density of unscreened color charges. Measurements performed in the LHC era have revolutionized our understanding of phenomena such as harmonic flow and jet quenching in the QGP and have altered the paradigm underlying proton-ion collisions. The high-quality calorimetry make the ATLAS detector an ideal apparatus to study jet observables and the large acceptance enables detailed measurements of soft particle correlations. In this talk I will summarize measurements performed by the ATLAS Collaboration. These include jet observables that are directly sensitive to jet quenching as well as a comprehensive set of color-neutral probes that provide control over hard scattering rates. Also presented are flow measurements that elucidate the role of initial geo...

Upgrade of the ATLAS Liquid Argon Calorimeters for the High-Luminosity LHC

CERN Document Server

McCarthy, Tom; The ATLAS collaboration

2016-01-01

The increased particle flux at the high luminosity phase of the Large Hadron Collider (HL-LHC), with instantaneous luminosities of up to 7.5 times the original design value, will have an impact on many sub-systems of the ATLAS detector. This contribution highlights the particular impacts on the ATLAS liquid argon calorimeter system, together with an overview of the various upgrade plans leading up to the HL-LHC. The higher luminosities are of particular importance for the forward calorimeters (FCal), where the expected increase in the ionization load poses a number of problems that can degrade the FCal performance such as beam heating and space-charge effects in the liquid argon gaps and high-voltage drop due to increased current drawn over the current-limiting resistors. A proposed FCal replacement as a way to counter some of these problems is weighed against the risks associated with the replacement. To further mitigate the effects of increased pile-up, the installation of a high-granularity timing detector...

Characterisation and exploitation of Atlas electromagnetic calorimeter performances: muons study and timing resolution use; Caracterisation et exploitation des performances du calorimetre electromagneique d'Atlas: etude des muons et mise a profit de la resolution en temps

Energy Technology Data Exchange (ETDEWEB)

Camard, A

2004-10-01

The ATLAS detector in LHC involves electromagnetic calorimeters. The purpose of this work is to study the calorimeter response to the muons contaminating the beam used to test the different modules of ATLAS. We have showed how data analysis from the testing beam can be used to assure that the required performance for the study of the detector response to muons provides a complementary diagnostic tool for electrons. We have taken part into the design of a testing bench aimed at assessing the performance of the receiver circuit for timing and triggering signals. We have developed, in the framework of a quick simulation of ATLAS, a tool for the reconstruction in a simple and fast manner of the localization of the main event vertex by using the measurement of the arrival time of particles with ATLAS's calorimeters. It is likely that this tool will be fully used during the starting phase of the ATLAS experiment because it is easier to operate it quickly and is less sensitive to the background noise than traditional tools based on charged-particle tracks recognition inside the detector.

Atlas Pulsed Power Facility for High Energy Density Physics Experiments

International Nuclear Information System (INIS)

Miller, R.B.; Ballard, E.O.; Barr, G.W.; Bowman, D.W.; Chochrane, J.C.; Davis, H.A.; Elizondo, J.M.; Gribble, R.F.; Griego, J.R.; Hicks, R.D.; Hinckley, W.B.; Hosack, K.W.; Nielsen, K.E.; Parker, J.V.; Parsons, M.O.; Rickets, R.L.; Salazar, H.R.; Sanchez, P.G.; Scudder, D.W.; Shapiro, C.; Thompson, M.C.; Trainor, R.J.; Valdez, G.A.; Vigil, B.N.; Watt, R.G.; Wysock, F.J.

1999-01-01

The Atlas facility, now under construction at Los Alamos National Laboratory (LANL), will provide a unique capability for performing high-energy-density experiments in support of weapon-physics and basic-research programs. It is intended to be an international user facility, providing opportunities for researchers from national laboratories and academic institutions around the world. Emphasizing institutions around the world. Emphasizing hydrodynamic experiments, Atlas will provide the capability for achieving steady shock pressures exceeding 10-Mbar in a volume of several cubic centimeters. In addition, the kinetic energy associated with solid liner implosion velocities exceeding 12 km/s is sufficient to drive dense, hydrodynamic targets into the ionized regime, permitting the study of complex issues associated with strongly-coupled plasmas. The primary element of Atlas is a 23-MJ capacitor bank, comprised of 96 separate Marx generators housed in 12 separate oil-filled tanks, surrounding a central target chamber. Each tank will house two, independently-removable maintenance units, with each maintenance unit consisting of four Marx modules. Each Marx module has four capacitors that can each be charged to a maximum of 60 kilovolts. When railgap switches are triggered, the marx modules erect to a maximum of 240 kV. The parallel discharge of these 96 Marx modules will deliver a 30-MA current pulse with a 4-5-micros risetime to a cylindrical, imploding liner via 24 vertical, tri-plate, oil-insulated transmission lines. An experimental program for testing and certifying all Marx and transmission line components has been completed. A complete maintenance module and its associated transmission line (the First Article) are now under construction and testing. The current Atlas schedule calls for construction of the machine to be complete by August, 2000. Acceptance testing is scheduled to begin in November, 2000, leading to initial operations in January, 2001

Study of Standard Model processes with leptons of high transverse momentum with the ATLAS detector

CERN Document Server

Petridis, Andreas

This PhD thesis has taken up various aspects in experimental particle physics by analyzing the first data of the ATLAS detector. The main subject of the thesis is the production cross section measurement of the ZZ process at sqrt{s} = 7 TeV of proton-proton collisions. In order to study this, the author has contributed to various topics, such as detector related issues, the study of standard candle processes and Monte Carlo studies. In specic, this thesis presents a detailed study for the improvement of the hit position and peaking time resolution of the CSCs with 0.6% and 0.4% relative errors respectively. This thesis has also contributed to the first Z inclusive cross section measurement at sqrt{s} = 7 TeV, by analyzing the first 316 nb-1 of data recorded by the Atlas detector. The Z->ll cross section measurement is used as a standard candle for detector performance assessment as well as for the tuning of theoretical predictions at the new energy regime. The fiducial and total cross sections have ...

Novel methods in track-based alignment to correct for time-dependent distortions of the ATLAS Inner Detector

CERN Document Server

Estrada Pastor, Oscar; The ATLAS collaboration

2017-01-01

ATLAS is a multipurpose experiment at the LHC proton-proton collider. Its physics goals require high resolution and unbiased measurement of all charged particle kinematic parameters. These critically depend on the layout and performance of the tracking system and the quality of its alignment. For the LHC Run II, the system has been upgraded with the installation of a new pixel layer, the Insertable B-layer (IBL). The offline track alignment of the ATLAS tracking system has to deal with about 700,000 degrees of freedom (DoF) defining its geometrical parameters, representing a considerable numerical challenge in terms of both CPU time and precision. An outline of the track based alignment approach and its implementation within the ATLAS software is presented. Special attention is paid to describe the techniques allowing to pinpoint and eliminate track parameters biases. During Run-II, ATLAS Inner Detector Alignment framework has been adapted and upgraded to correct very short time scale movements of the sub-det...

Novel methods in track-based alignment to correct for time-dependent distortions of the ATLAS Inner Detector

CERN Document Server

Estrada Pastor, Oscar; The ATLAS collaboration

2017-01-01

ATLAS is a multipurpose experiment at the LHC proton-proton collider. Its physics goals require high resolution, unbiased measurement of all charged particle kinematic parameters. These critically depend on the layout and performance of the tracking system and the quality of its offline alignment. For the LHC Run II, the system has been upgraded with the installation of a new pixel layer, the Insertable B-layer (IBL). Offline track alignment of the ATLAS tracking system has to deal with about 700,000 degrees of freedom (DoF) defining its geometrical parameters, representing a considerable numerical challenge in terms of both CPU time and precision. An outline of the track based alignment approach and its implementation within the ATLAS software will be presented. Special attention will be paid to describe the techniques allowing to pinpoint and eliminate track parameters biases due to alignment. During Run-II, ATLAS Inner Detector Alignment framework has been adapted and upgraded to correct very short time sc...

The ATLAS Level-1 Calorimeter Trigger

International Nuclear Information System (INIS)

Achenbach, R; Andrei, V; Adragna, P; Apostologlou, P; Barnett, B M; Brawn, I P; Davis, A O; Edwards, J P; Asman, B; Bohm, C; Ay, C; Bauss, B; Bendel, M; Dahlhoff, A; Eckweiler, S; Booth, J R A; Thomas, P Bright; Charlton, D G; Collins, N J; Curtis, C J

2008-01-01

The ATLAS Level-1 Calorimeter Trigger uses reduced-granularity information from all the ATLAS calorimeters to search for high transverse-energy electrons, photons, τ leptons and jets, as well as high missing and total transverse energy. The calorimeter trigger electronics has a fixed latency of about 1 μs, using programmable custom-built digital electronics. This paper describes the Calorimeter Trigger hardware, as installed in the ATLAS electronics cavern

The ATLAS Level-1 Calorimeter Trigger

Energy Technology Data Exchange (ETDEWEB)

Achenbach, R; Andrei, V [Kirchhoff-Institut fuer Physik, University of Heidelberg, D-69120 Heidelberg (Germany); Adragna, P [Physics Department, Queen Mary, University of London, London E1 4NS (United Kingdom); Apostologlou, P; Barnett, B M; Brawn, I P; Davis, A O; Edwards, J P [STFC Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxon OX11 0QX (United Kingdom); Asman, B; Bohm, C [Fysikum, Stockholm University, SE-106 91 Stockholm (Sweden); Ay, C; Bauss, B; Bendel, M; Dahlhoff, A; Eckweiler, S [Institut fuer Physik, University of Mainz, D-55099 Mainz (Germany); Booth, J R A; Thomas, P Bright; Charlton, D G; Collins, N J; Curtis, C J [School of Physics and Astronomy, University of Birmingham, Birmingham B15 2TT (United Kingdom)], E-mail: e.eisenhandler@qmul.ac.uk (and others)

2008-03-15

The ATLAS Level-1 Calorimeter Trigger uses reduced-granularity information from all the ATLAS calorimeters to search for high transverse-energy electrons, photons, {tau} leptons and jets, as well as high missing and total transverse energy. The calorimeter trigger electronics has a fixed latency of about 1 {mu}s, using programmable custom-built digital electronics. This paper describes the Calorimeter Trigger hardware, as installed in the ATLAS electronics cavern.

Automated load balancing in the ATLAS high-performance storage software

CERN Document Server

Le Goff, Fabrice; The ATLAS collaboration

2017-01-01

The ATLAS experiment collects proton-proton collision events delivered by the LHC accelerator at CERN. The ATLAS Trigger and Data Acquisition (TDAQ) system selects, transports and eventually records event data from the detector at several gigabytes per second. The data are recorded on transient storage before being delivered to permanent storage. The transient storage consists of high-performance direct-attached storage servers accounting for about 500 hard drives. The transient storage operates dedicated software in the form of a distributed multi-threaded application. The workload includes both CPU-demanding and IO-oriented tasks. This paper presents the original application threading model for this particular workload, discussing the load-sharing strategy among the available CPU cores. The limitations of this strategy were reached in 2016 due to changes in the trigger configuration involving a new data distribution pattern. We then describe a novel data-driven load-sharing strategy, designed to automatical...

EnviroAtlas - Potentially Restorable Wetlands in the Conterminous United States

Data.gov (United States)

U.S. Environmental Protection Agency — This EnviroAtlas dataset shows potentially restorable wetlands at 30 meter resolution. Beginning two centuries ago, many wetlands were turned into farm fields or...

Angular resolution of the gaseous micro-pixel detector Gossip

Science.gov (United States)

Bilevych, Y.; Blanco Carballo, V.; van Dijk, M.; Fransen, M.; van der Graaf, H.; Hartjes, F.; Hessey, N.; Koppert, W.; Nauta, S.; Rogers, M.; Romaniouk, A.; Veenhof, R.

2011-06-01

Gossip is a gaseous micro-pixel detector with a very thin drift gap intended for a high rate environment like at the pixel layers of ATLAS at the sLHC. The detector outputs not only the crossing point of a traversing MIP, but also the angle of the track, thus greatly simplifying track reconstruction. In this paper we describe a testbeam experiment to examine the angular resolution of the reconstructed track segments in Gossip. We used here the low diffusion gas mixture DME/CO 2 50/50. An angular resolution of 20 mrad for perpendicular tracks could be obtained from a 1.5 mm thin drift volume. However, for the prototype detector used at the testbeam experiment, the resolution of slanting tracks was worsened by poor time resolution of the pixel chip used.

Angular resolution of the gaseous micro-pixel detector Gossip

Energy Technology Data Exchange (ETDEWEB)

Bilevych, Y.; Blanco Carballo, V.; Dijk, M. van; Fransen, M.; Graaf, H. van der; Hartjes, F.; Hessey, N.; Koppert, W.; Nauta, S. [Nikhef, P.O. Box 41882, 1009 DB Amsterdam (Netherlands); Rogers, M. [Radboud University, P.O. Box 9102, 6500HC Nijmegen (Netherlands); Romaniouk, A.; Veenhof, R. [CERN, CH-1211, Geneve 23 (Switzerland)

2011-06-15

Gossip is a gaseous micro-pixel detector with a very thin drift gap intended for a high rate environment like at the pixel layers of ATLAS at the sLHC. The detector outputs not only the crossing point of a traversing MIP, but also the angle of the track, thus greatly simplifying track reconstruction. In this paper we describe a testbeam experiment to examine the angular resolution of the reconstructed track segments in Gossip. We used here the low diffusion gas mixture DME/CO{sub 2} 50/50. An angular resolution of 20 mrad for perpendicular tracks could be obtained from a 1.5 mm thin drift volume. However, for the prototype detector used at the testbeam experiment, the resolution of slanting tracks was worsened by poor time resolution of the pixel chip used.

Angular resolution of the gaseous micro-pixel detector Gossip

International Nuclear Information System (INIS)

Bilevych, Y.; Blanco Carballo, V.; Dijk, M. van; Fransen, M.; Graaf, H. van der; Hartjes, F.; Hessey, N.; Koppert, W.; Nauta, S.; Rogers, M.; Romaniouk, A.; Veenhof, R.

2011-01-01

Gossip is a gaseous micro-pixel detector with a very thin drift gap intended for a high rate environment like at the pixel layers of ATLAS at the sLHC. The detector outputs not only the crossing point of a traversing MIP, but also the angle of the track, thus greatly simplifying track reconstruction. In this paper we describe a testbeam experiment to examine the angular resolution of the reconstructed track segments in Gossip. We used here the low diffusion gas mixture DME/CO 2 50/50. An angular resolution of 20 mrad for perpendicular tracks could be obtained from a 1.5 mm thin drift volume. However, for the prototype detector used at the testbeam experiment, the resolution of slanting tracks was worsened by poor time resolution of the pixel chip used.

High-Resolution PET Detector. Final report

International Nuclear Information System (INIS)

Karp, Joel

2014-01-01

The objective of this project was to develop an understanding of the limits of performance for a high resolution PET detector using an approach based on continuous scintillation crystals rather than pixelated crystals. The overall goal was to design a high-resolution detector, which requires both high spatial resolution and high sensitivity for 511 keV gammas. Continuous scintillation detectors (Anger cameras) have been used extensively for both single-photon and PET scanners, however, these instruments were based on NaI(Tl) scintillators using relatively large, individual photo-multipliers. In this project we investigated the potential of this type of detector technology to achieve higher spatial resolution through the use of improved scintillator materials and photo-sensors, and modification of the detector surface to optimize the light response function.We achieved an average spatial resolution of 3-mm for a 25-mm thick, LYSO continuous detector using a maximum likelihood position algorithm and shallow slots cut into the entrance surface

A probabilistic atlas of human brainstem pathways based on connectome imaging data.

Science.gov (United States)

Tang, Yuchun; Sun, Wei; Toga, Arthur W; Ringman, John M; Shi, Yonggang

2018-04-01

The brainstem is a critical structure that regulates vital autonomic functions, houses the cranial nerves and their nuclei, relays motor and sensory information between the brain and spinal cord, and modulates cognition, mood, and emotions. As a primary relay center, the fiber pathways of the brainstem include efferent and afferent connections among the cerebral cortex, spinal cord, and cerebellum. While diffusion MRI has been successfully applied to map various brain pathways, its application for the in vivo imaging of the brainstem pathways has been limited due to inadequate resolution and large susceptibility-induced distortion artifacts. With the release of high-resolution data from the Human Connectome Project (HCP), there is increasing interest in mapping human brainstem pathways. Previous works relying on HCP data to study brainstem pathways, however, did not consider the prevalence (>80%) of large distortions in the brainstem even after the application of correction procedures from the HCP-Pipeline. They were also limited in the lack of adequate consideration of subject variability in either fiber pathways or region of interests (ROIs) used for bundle reconstruction. To overcome these limitations, we develop in this work a probabilistic atlas of 23 major brainstem bundles using high-quality HCP data passing rigorous quality control. For the large-scale data from the 500-Subject release of HCP, we conducted extensive quality controls to exclude subjects with severe distortions in the brainstem area. After that, we developed a systematic protocol to manually delineate 1300 ROIs on 20 HCP subjects (10 males; 10 females) for the reconstruction of fiber bundles using tractography techniques. Finally, we leveraged our novel connectome modeling techniques including high order fiber orientation distribution (FOD) reconstruction from multi-shell diffusion imaging and topography-preserving tract filtering algorithms to successfully reconstruct the 23 fiber bundles

Status of the ATLAS Pixel Detector at the LHC and its performance after three years of operation

CERN Document Server

Andreazza, A; The ATLAS collaboration

2012-01-01

The ATLAS Pixel Detector is the innermost detector of the ATLAS experiment at the Large Hadron Collider at CERN, providing high-resolution measurements of charged particle tracks in the high radiation environment close to the collision region. This capability is vital for the identification and measurement of proper decay times of long-lived particles such as b-hadrons, and thus vital for the ATLAS physics program. The detector provides hermetic coverage with three cylindrical layers and three layers of forward and backward pixel detectors. It consists of approximately 80 million pixels that are individually read out via chips bump-bonded to 1744 n-in-n silicon substrates. In this talk, results from the successful operation of the Pixel Detector at the LHC and its status after three years of operation will be presented, including monitoring, calibration procedures, timing optimization and detector performance. The detector performance is excellent: ~96 % of the pixels are operational, noise occupancy and hit ...

ATLAS B-physics potential

International Nuclear Information System (INIS)

Smizanska, M.

2001-01-01

Studies since 1993 have demonstrated the ability of ATLAS to pursue a wide B physics program. This document presents the latest performance studies with special stress on lepton identification. B-decays containing several leptons in ATLAS statistically dominate the high-precision measurements. We present new results on physics simulations of CP violation measurements in the B s 0 → J/Ψphi decay and on a novel ATLAS programme on beauty production in central proton-proton collisions of LHC

Multi-atlas pancreas segmentation: Atlas selection based on vessel structure.

Science.gov (United States)

Karasawa, Ken'ichi; Oda, Masahiro; Kitasaka, Takayuki; Misawa, Kazunari; Fujiwara, Michitaka; Chu, Chengwen; Zheng, Guoyan; Rueckert, Daniel; Mori, Kensaku

2017-07-01

Automated organ segmentation from medical images is an indispensable component for clinical applications such as computer-aided diagnosis (CAD) and computer-assisted surgery (CAS). We utilize a multi-atlas segmentation scheme, which has recently been used in different approaches in the literature to achieve more accurate and robust segmentation of anatomical structures in computed tomography (CT) volume data. Among abdominal organs, the pancreas has large inter-patient variability in its position, size and shape. Moreover, the CT intensity of the pancreas closely resembles adjacent tissues, rendering its segmentation a challenging task. Due to this, conventional intensity-based atlas selection for pancreas segmentation often fails to select atlases that are similar in pancreas position and shape to those of the unlabeled target volume. In this paper, we propose a new atlas selection strategy based on vessel structure around the pancreatic tissue and demonstrate its application to a multi-atlas pancreas segmentation. Our method utilizes vessel structure around the pancreas to select atlases with high pancreatic resemblance to the unlabeled volume. Also, we investigate two types of applications of the vessel structure information to the atlas selection. Our segmentations were evaluated on 150 abdominal contrast-enhanced CT volumes. The experimental results showed that our approach can segment the pancreas with an average Jaccard index of 66.3% and an average Dice overlap coefficient of 78.5%. Copyright © 2017 Elsevier B.V. All rights reserved.