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Sample records for halosarcina pallida bz256t

  1. Ecosystem pressures: Ecklonia maxima and Laminaria pallida

    CSIR Research Space (South Africa)

    Dunga, LVA

    2017-06-01

    Full Text Available is fundamental to the assessment of their ecosystem condition and is important for their spatial management, particularly in the face of changing climates (Figure 3a&b&c). • In South Africa Ecklonia maxima and Laminaria pallida constitute the dominant forest... maxima and Laminaria pallida Authors: L.V.A Dunga, L.K. Blamey, M.D. Rothman, M. Lück-Vogel, K. Sink & J.J. Bolton • To synthesize a national occurrence map of the South African kelp forest, improving on that generated by Anderson et al. (2007) • Measure...

  2. Weed hosts Globodera pallida from Idaho

    Science.gov (United States)

    The potato cyst nematode, Globodera pallida (PCN), a restricted pest in the USA, was first reported in Bingham and Bonneville counties of Idaho in 2006. The US government and Idaho State Department of Agriculture hope to eradicate it from infested fields. Eradicating PCN will require depriving the n...

  3. Nymphal feeding habits of Perla pallida (Plecoptera: Perlidae) from Armenia

    Czech Academy of Sciences Publication Activity Database

    Manko, P.; López-Rodríguez, M. J.; Tierno de Figueroa, J. M.; Hrivniak, Ľuboš; Papyan, L.; Harutyunyan, M.; Oboňa, J.

    2016-01-01

    Roč. 71, č. 3 (2016), s. 328-333 ISSN 0006-3088 Institutional support: RVO:60077344 Keywords : Plecoptera * Perlidae * Perla pallida Subject RIV: EH - Ecology, Behaviour Impact factor: 0.759, year: 2016

  4. Influence of soil temperature on Globodera rostochiensis and Globodera pallida

    Directory of Open Access Journals (Sweden)

    Agata KACZMAREK

    2015-01-01

    Full Text Available Relationships between soil temperatures and the potato cyst nematode (PCN life cycle and population multiplication were investigated to understand the risks to potato crops from PCN in relation to increasing soil temperatures associated with climate change, and to support development of the United Kingdom Potato Council`s PCN management model. The initial (hatching part of the PCN life cycle was examined for both Globodera rostochiensis and G. pallida over a range of temperatures, and the responses are then considered in relation to actual soil temperatures during the potato growing season in different sites in the United Kingdom. Hatching was stimulated by potato root diffusate over a temperature range from 5–29ºC and was monitored for 5 weeks. The greatest cumulative percentage hatch of second stage juveniles (J2 occurred between 15 and 27ºC for G. rostochiensis and 13–25ºC for G. pallida. Globodera rostochiensis hatched more quickly and had a delayed hatch at ≥25ºC while G. pallida was more efficient at these higher temperatures. From these observations, it is likely that climate change, and associated increases in soil temperatures, will result in increased rates and amounts of hatching for both species, leading to increased population levels on susceptible hosts and damage to potato crops. Currently, regions of the United Kingdom with warm soil temperatures are also expected to have high levels of hatching of PCN, and therefore greater multiplication resulting in greater challenges in the management of these nematodes in infested land.

  5. Molecular variation in the potato cyst nematode, Globodera pallida, in relation to virulence.

    Science.gov (United States)

    Blok, V C; Pylypenko, L; Phillips, M S

    2006-01-01

    The potato cyst nematode Globodera pallida poses a challenge for potato growers. The potato cyst nematodes (PCN) Globodera rostochiensis and G. pallida cause damage valued at over pounds 50m per annum in the U.K. and problems in controlling PCN are growing due to the increase in populations and spread of G. pallida, the lack of many commercially attractive cultivars with resistance to this species and the pressure to reduce nematicide use. Over 60% of potato fields in the U.K. are infected with G. pallida (Minnis et al. 2000). The Scottish Agricultural Science Agency (SASA) figures show that the incidence of both species of PCN on Scottish seed potato land, though low, has been increasing. The proportion of potato land in ware production in Scotland is also increasing and now represents 50% of the potato growing area. This situation potentially increases the risk of the spread of PCN unless it is very carefully monitored and managed.

  6. Genetic Regulation in the Aiptasia pallida Symbiosis - Performance Report, Year 1

    National Research Council Canada - National Science Library

    Tomb, Jean-Francois

    1997-01-01

    This report describes the progress of the project 'Genetic Regulation in A. pallida Symbiosis'. The main goal of the project in year 1 was to identify sequence tags for differentially expressed genes using the SAGE approach...

  7. Prospecting fungal parasites of the potato cyst nematode Globodera pallida using a rapid screening technique.

    Science.gov (United States)

    Kooliyottil, Rinu; Dandurand, Louise-Marie; Knudsen, Guy R

    2017-05-01

    Seven filamentous fungal species were isolated from individual eggs of Globodera pallida cysts collected from infested fields in Shelley Idaho, USA and identified as Chaetomium globosum, Fusarium oxysporum, Fusarium solani, Fusarium tricinctum, Microdochium bolleyi, Purpureocillium lilacinum, and Plectosphaerella cucumerina. Their ability to reduce infection by G. pallida in planta were assessed in simple, reproducible micro-rhizosphere chambers (micro-ROCs). All fungi reduced G. pallida infection in potato, but greatest reduction was observed with C. globosum at an average reduction of 76%. Further non-destructive methods were developed to rapidly assess biological control potential of putative fungal strains by staining the infectious second stage juveniles of G. pallida with the live fluorescent stain PKH26. In comparisons between the standard, invasive acid fuchsin method and use of the live stain PKH26, no significant difference in infection level of G. pallida was observed whether roots were stained with PKH26 or acid fuchsin. For both methods, a similar reduction (77% for acid fuchsin, and 78% for PKH26 stain) in invasion of infectious stage of G. pallida was observed when potato plants were inoculated with C. globosum compared to non-inoculated potato. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  8. Characterisation of a collagen gene subfamily from the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Gray, L J; Curtis, R H; Jones, J T

    2001-01-24

    We have isolated two full-length genomic DNA sequences, which encode the cuticle collagen proteins GP-COL-1 and GP-COL-2, from the potato cyst nematode Globodera pallida. A third, partial collagen gene ORF termed gp-col-t(t=truncated) has also been isolated and appears to represent an unexpressed pseudogene. The gp-col-1 and gp-col-2 genes both contain three short (nematode growth and reproduction. Immunochemical studies indicate that the GP-COL-1 protein is specifically located in the hypodermis of G. pallida adult females.

  9. A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Armstrong, M R; Blok, V C; Phillips, M S

    2000-01-01

    The mitochondrial genome (mtDNA) of the plant parasitic nematode Globodera pallida exists as a population of small, circular DNAs that, taken individually, are of insufficient length to encode the typical metazoan mitochondrial gene complement. As far as we are aware, this unusual structural organization is unique among higher metazoans, although interesting comparisons can be made with the multipartite mitochondrial genome organizations of plants and fungi. The variation in frequency between populations displayed by some components of the mtDNA is likely to have major implications for the way in which mtDNA can be used in population and evolutionary genetic studies of G. pallida.

  10. Field evaluation of the nematicide fluensulfone for control of the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Norshie, Patrick M; Grove, Ivan G; Back, Matthew A

    2016-10-01

    Three field experiments evaluated the performance of the nematicide fluensulfone against the potato cyst nematode Globodera pallida in Shropshire, England. Experiments 1 and 2 showed reduced root infection and lowered multiplication of G. pallida following fluensulfone (Nimitz 15G(®) ) soil treatments at five rates (1.95, 3.00, 4.05 (full rate), 5.05 and 6.00 kg AI ha(-1) ) and Nimitz 480EC(®) at the full rate. Experiment 3 demonstrated a positive interaction between the full rate of Nimitz 15G and the potato variety Santé in the reduction of G. pallida. The fluensulfone treatments at the full rate had more consistent effects than the lower rates, and there were no greater effects for the treatments higher than this full rate. Generally, fluensulfone was less efficacious than oxamyl or fosthiazate, which suggests that the treatment may not be reliably integrated within shorter potato rotations. The data suggest that fluensulfone soil application could make a useful addition to the few available nematicide treatments for the control of G. pallida rather than be a substitute for these treatments.© 2016 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. © 2016 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

  11. Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida

    NARCIS (Netherlands)

    Thorpe, P.; Mantelin, S.; Cock, P.J.A.; Blok, V.C.; Coke, M.C.; Evers-van den Akker, S.; Guzeeva, E.; Lilley, C.J.; Smant, G.; Reid, A.J.; Wright, K.M.; Urwin, P.E.; Jones, J.T.

    2014-01-01

    Background The potato cyst nematode Globodera pallida has biotrophic interactions with its host. The nematode induces a feeding structure – the syncytium – which it keeps alive for the duration of the life cycle and on which it depends for all nutrients required to develop to the adult stage.

  12. Comparative effects of dissolved copper and copper oxide nanoparticle exposure to the sea anemone, Exaiptasia pallida

    Energy Technology Data Exchange (ETDEWEB)

    Siddiqui, Samreen; Goddard, Russell H.; Bielmyer-Fraser, Gretchen K., E-mail: gkbielmyer@valdosta.edu

    2015-03-15

    Highlights: • Differences between CuO NP and CuCl{sub 2} exposure were characterized. • Copper accumulation in E. pallida was concentration-dependent. • E. pallida exposed to CuCl{sub 2} accumulated higher copper tissue burdens. • The oxidative stress response was greater in E. pallida exposed to CuO NP. • Both forms of copper inhibited CA activity in E. pallida. - Abstract: Increasing use of metal oxide nanoparticles (NP) by various industries has resulted in substantial output of these NP into aquatic systems. At elevated concentrations, NP may interact with and potentially affect aquatic organisms. Environmental implications of increased NP use are largely unknown, particularly in marine systems. This research investigated and compared the effects of copper oxide (CuO) NP and dissolved copper, as copper chloride (CuCl{sub 2}), on the sea anemone, Exaiptasia pallida. Sea anemones were collected over 21 days and tissue copper accumulation and activities of the enzymes: catalase, glutathione peroxidase, glutathione reductase, and carbonic anhydrase were quantified. The size and shape of CuO NP were observed using a ecanning electron microscope (SEM) and the presence of copper was confirmed by using Oxford energy dispersive spectroscopy systems (EDS/EDX). E. pallida accumulated copper in their tissues in a concentration- and time-dependent manner, with the animals exposed to CuCl{sub 2} accumulating higher tissue copper burdens than those exposed to CuO NP. As a consequence of increased copper exposure, as CuO NP or CuCl{sub 2}, anemones increased activities of all of the antioxidant enzymes measured to some degree, and decreased the activity of carbonic anhydrase. Anemones exposed to CuO NP generally had higher anti-oxidant enzyme activities than those exposed to the same concentrations of CuCl{sub 2}. This study is useful in discerning differences between CuO NP and dissolved copper exposure and the findings have implications for exposure of aquatic

  13. Management of the potato cyst nematode (Globodera pallida) with bio-fumigants/stimulants.

    Science.gov (United States)

    Martin, T J G; Turner, S J; Fleming, C C

    2007-01-01

    Field trials evaluated the effect of four plant-based bio-fumigants/stimulants on population levels of G. pallida and the resulting potato yields and quality. Three formulations contained seaweed biostimulants (Algifol, Nutridip and Metastim) and one bio-fumigant containing mustard and chilli pepper extracts (Dazitol). These were compared with the fumigant nematicide Nemathorin and untreated control plots. The effect of G. pallida on growing potato crops was assessed by recording haulm characteristics which indicated that the nematicide treatment gave most protection. Levels of PCN juveniles and migratory nematodes were assessed during the trial. Plots treated with Nemathorin and Dazitol had fewest PCN, whilst the highest number of migratory nematodes occurred in fallow plots. Sixteen weeks after planting the nematicide treatment produced highest yield and tuber numbers. Dazitol treatment produced a lower yield but the largest tubers.

  14. Effects of Leucaena pallida and Sesbania sesban supplementation on testicular histology of tropical sheep and goats

    NARCIS (Netherlands)

    Woldemeskel, M.; Tegegne, A.; Umunna, N.N.; Kaitho, R.J.; Tamminga, S.

    2001-01-01

    Thirty Ethiopian highland rams with an average body weight of 23.7 kg (S.D.=1.23) and age of 18 months and 25 East African bucks with an average body weight of 18.6 kg (S.D.=2.06) and age of 14 months were used to study the long term effects of supplementation with the leaves of Leucaena pallida and

  15. Potato cyst nematodes Globodera rostochiensis and Globodera pallida, and their chemoecological interactions with the host plant

    OpenAIRE

    Čepulytė-Rakauskienė, Rasa

    2012-01-01

    Potato cyst nematodes Globodera rostochiensis and Globodera pallida are one of the most important solanaceous plant pests. Identification of potato cyst nematodes species is exposed to morphological similarities and overlapping morphometric measurements between species. Only modern molecular techniques allow more accurate identification of potato cyst nematode species. Hence, it is important to apply these techniques in order to reliably identify these species in Lithuania. Potato roo...

  16. Responses of the sea anemone, Exaiptasia pallida, to ocean acidification conditions and zinc or nickel exposure.

    Science.gov (United States)

    Duckworth, Christina G; Picariello, Codie R; Thomason, Rachel K; Patel, Krina S; Bielmyer-Fraser, Gretchen K

    2017-01-01

    Ocean acidification, caused by increasing atmospheric carbon dioxide (CO 2 ), is a growing concern in marine environments. Land-based sources of pollution, such as metals, have also been a noted problem; however, little research has addressed the combined exposure of both pollutants to coral reef organisms. In this study we examined tissue metal accumulation and physiological effects (activity of anti-oxidant enzymes, catalase and glutathione reductase) in the sea anemone, Exaiptasia pallida after exposure to increased CO 2 , as well as zinc (Zn) or nickel (Ni). After exposure to four concentrations (nominal values=control, 10, 50, 100μg/L) of Zn or Ni over 7days, both metals accumulated in the tissues of E. pallida in a concentration-dependent manner. Anemones exposed to elevated CO 2 (1000ppm) accumulated significant tissue burdens of Zn or Ni faster (by 48h) than those exposed to the same metal concentrations at ambient CO 2 . No differences were observed in catalase activity due to Zn exposure; however, 50μg/L Ni caused a significant increase in catalase activity at ambient CO 2 . No significant effect on catalase activity from CO 2 exposure alone was observed. Glutathione reductase activity was affected by increased Zn or Ni exposure and those effects were influenced by increased CO 2 . Results of this study provide insight into the toxic mechanisms and environmental implications of CO 2 and Zn or Ni exposure to the cnidarian E. pallida. Copyright © 2016 Elsevier B.V. All rights reserved.

  17. Interactions between the tropical sea anemone Aiptasia pallida and Serratia marcescens, an opportunistic pathogen of corals.

    Science.gov (United States)

    Krediet, Cory J; Meyer, Julie L; Gimbrone, Nicholas; Yanong, Roy; Berzins, Ilze; Alagely, Ali; Castro, Herman; Ritchie, Kim B; Paul, Valerie J; Teplitski, Max

    2014-06-01

    Coral reefs are under increasing stress caused by global and local environmental changes, which are thought to increase the susceptibility of corals to opportunistic pathogens. In the absence of an easily culturable model animal, the understanding of the mechanisms of disease progression in corals remains fairly limited. In the present study, we tested the susceptibility of the tropical sea anemone Aiptasia pallida to an opportunistic coral pathogen (Serratia marcescens). A. pallida was susceptible to S. marcescens PDL100 and responded to this opportunistic coral pathogen with darkening of the tissues and retraction of tentacles, followed by complete disintegration of polyp tissues. Histological observations revealed loss of zooxanthellae and structural changes in eosinophilic granular cells in response to pathogen infection. A screen of S. marcescens mutants identified a motility and tetrathionate reductase mutants as defective in virulence in the A. pallida infection model. In co-infections with the wild-type strain, the tetrathionate reductase mutant was less fit within the surface mucopolysaccharide layer of the host coral Acropora palmata. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

  18. Using SNP markers to dissect linkage disequilibrium at a major quantitative trait locus for resistance to the potato cyst nematode Globodera pallida on potato chromosome V

    NARCIS (Netherlands)

    Achenbach, U.; Caldas Paulo, M.J.; Ilarionova, E.; Lübeck, J.; Strahwald, J.; Tacke, E.; Hofferbert, H.R.

    2009-01-01

    The damage caused by the parasitic root cyst nematode Globodera pallida is a major yield-limiting factor in potato cultivation . Breeding for resistance is facilitated by the PCR-based marker 'HC', which is diagnostic for an allele conferring high resistance against G. pallida pathotype Pa2/3 that

  19. Extratos aquosos de Trichilia pallida e a traça-do-tomateiro Aqueous extracts of Trichilia pallida and the tomato pinworm

    Directory of Open Access Journals (Sweden)

    Ariane Paes de Barros Werckmeister Thomazini

    2000-03-01

    Full Text Available Avaliou-se o efeito de extratos aquosos de folhas e de ramos da planta inseticida Trichilia pallida sobre o desenvolvimento e oviposição da traça-do-tomateiro, Tuta absoluta. Acompanhou-se o desenvolvimento do inseto em folhas de tomateiro (Lycopersicon esculentum, cv. Santa Clara previamente submersas nos extratos nas concentrações de 0,1; 1,0 e 5,0%. Também foi avaliado o efeito dos extratos de folhas a 1,0 e 5,0%, pulverizados sobre ovos do inseto, e a não-preferência para oviposição, com chance de escolha, em folhas de tomateiro com e sem esse extrato a 5%. Verificou-se que os extratos de folhas e de ramos prejudicam o desenvolvimento do inseto afetando principalmente a fase larval, aumentando a duração e reduzindo a viabilidade deste período. O extrato de folhas apresenta maior atividade que o de ramos, reduzindo a viabilidade larval a valores próximos a 20%, já na concentração de 1%. O extrato de folhas a 5% não apresenta efeito ovicida mas, o substrato tratado pode tornar-se menos preferido para oviposição.The effect of aqueous extracts of Trichilia pallida leaves and twigs on the development and oviposition of Tuta absoluta was evaluated. Larvae of T. absoluta were fed with tomato leaves (Lycopersicon esculentum, cv. Santa Clara previously treated with extracts at concentrations of 0.1; 1.0 and 5.0%. The effects of the leaf extracts at 1.0 and 5.0% were evaluated on eggs of this pest. Free-choice non-preference tests for oviposition were also conducted with treated and non-treated tomato leaves with the extract at concentration of 5.0%. Leaf and twig extracts affect the insect development mainly at the larval stage, increasing the length and reducing viability of this stage. The activity of the leaf extract is greater than that of the twig extract with the reduction of larval viability to approximately 20% at concentration of 1.0%. No ovicidal activity was detected with T. pallida leaf extract at 5.0%, however, the

  20. Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Thorpe, Peter; Mantelin, Sophie; Cock, Peter Ja; Blok, Vivian C; Coke, Mirela C; Eves-van den Akker, Sebastian; Guzeeva, Elena; Lilley, Catherine J; Smant, Geert; Reid, Adam J; Wright, Kathryn M; Urwin, Peter E; Jones, John T

    2014-10-23

    The potato cyst nematode Globodera pallida has biotrophic interactions with its host. The nematode induces a feeding structure - the syncytium - which it keeps alive for the duration of the life cycle and on which it depends for all nutrients required to develop to the adult stage. Interactions of G. pallida with the host are mediated by effectors, which are produced in two sets of gland cells. These effectors suppress host defences, facilitate migration and induce the formation of the syncytium. The recent completion of the G. pallida genome sequence has allowed us to identify the effector complement from this species. We identify 128 orthologues of effectors from other nematodes as well as 117 novel effector candidates. We have used in situ hybridisation to confirm gland cell expression of a subset of these effectors, demonstrating the validity of our effector identification approach. We have examined the expression profiles of all effector candidates using RNAseq; this analysis shows that the majority of effectors fall into one of three clusters of sequences showing conserved expression characteristics (invasive stage nematode only, parasitic stage only or invasive stage and adult male only). We demonstrate that further diversity in the effector pool is generated by alternative splicing. In addition, we show that effectors target a diverse range of structures in plant cells, including the peroxisome. This is the first identification of effectors from any plant pathogen that target this structure. This is the first genome scale search for effectors, combined to a life-cycle expression analysis, for any plant-parasitic nematode. We show that, like other phylogenetically unrelated plant pathogens, plant parasitic nematodes deploy hundreds of effectors in order to parasitise plants, with different effectors required for different phases of the infection process.

  1. Determination of the Cl, Mg, Mn and Na, in samples of Tradescantia pallida

    International Nuclear Information System (INIS)

    Rossi, Joao Guilherme G.A.; Saiki, Mitiko

    2009-01-01

    The growing number of industries and automotive vehicles are causing the increase of the air pollution. Less expensive methodologies are been studying for the evaluation of these pollution levels. This work evaluates the concentrations of Cl, Mg, Mn and Na, present in the leaves of Tradescantia pallida viewing validation of the specie for use in the bio monitoring of the air pollution. Those leaves were collected and analysed using the short irradiation of the neutron activation analysis technique. The certified reference material INCT-MPH-2 Mixed Polish Herbs were analysed for the quality control of the results and presented very good accuracy, with relative errors less than 4.2 %, and good precision less than 8.7 %. The element concentrations (in μg g -1 ) obtained in the T. pallida samples analysed showed variation from 2324 to 33897 for Cl, from 3602 to 14450 for Mg, from 132 to 314 for Mn, and 21 to 615 for Na. Values obtained in the analyses of Tradescantia present great variability in the element concentrations. The short irradiation showed to be appropriated for determination of the elements studied in the bio monitoring of air pollution

  2. Effects of heavy metals/metalloids contamination of soils on micronucleus induction in Tradescantia pallida

    Directory of Open Access Journals (Sweden)

    Neelima Meravi

    2013-06-01

    Full Text Available The present study was conducted in GGV campus, Bilaspur in which heavy metals/metalloids speciation of soil (for Cr, Fe, Ni, Cd and Pb was performed for assessing the genotoxicity of these metals. The metals concentrations were measured with the help of AAS 7000 (Shimadzu and the standard solution was prepared using standard metal solution of Inorganic Ventures. The concentrations of Cr, Fe, Ni, Cd and Pb (in ug/100 g soil were 12.4, 33.9, 3.1, 0.07 and 2.4 respectively. The flowers of Tradescantia pallida plants growing in this soil were taken and their micronucleus (Trad-MCN bioassay was performed. Trad-MCN bioassay was performed using the protocols established by Ma (1981. The study revealed that at these concentrations of metals micronuclei (stained objects that were smaller than the nuclei and not connected to the nuclei are classified as MCN were formed. Therefore it can be inferred from the present study that soil of GGV campus is genotoxic for the Tradescantia pallida.

  3. Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida.

    Science.gov (United States)

    Duceppe, Marc-Olivier; Lafond-Lapalme, Joël; Palomares-Rius, Juan Emilio; Sabeh, Michaël; Blok, Vivian; Moffett, Peter; Mimee, Benjamin

    2017-06-20

    Potato cyst nematodes (PCNs), Globodera rostochiensis and G. pallida, cause important economic losses. They are hard to manage because of their ability to remain dormant in soil for many years. Although general knowledge about these plant parasitic nematodes has considerably increased over the past decades, very little is known about molecular events involved in cyst dormancy and hatching, two key steps of their development. Here, we have studied the progression of PCN transcriptomes from dry cysts to hatched juveniles using RNA-Seq. We found that several cell detoxification-related genes were highly active in the dry cysts. Many genes linked to an increase of calcium and water uptake were up-regulated during transition from dormancy to hydration. Exposure of hydrated cysts to host plant root exudates resulted in different transcriptional response between species. After 48 h of exposure, G. pallida cysts showed no significant modulation of gene expression while G. rostochiensis had 278 differentially expressed genes. The first G. rostochiensis significantly up-regulated gene was observed after 8 h and was coding for a transmembrane metalloprotease. This enzyme is able to activate/inactivate peptide hormones and could be involved in a cascade of events leading to hatching. Several known effector genes were also up-regulated during hatching.

  4. Aislamiento de Sporothrix pallida complex en muestras clínicas y ambientales de Chile

    Directory of Open Access Journals (Sweden)

    Rodrigo M Cruz Choappa

    2014-12-01

    Full Text Available Se informa para Chile el aislamiento de S. pallida complex desde muestras médicas y del suelo del hogar de una paciente. Los hongos del complejo Sporothrix schenckii pueden causar distintas infecciones. En Chile, los aislamientos médicos y ambientales de este complejo son poco frecuentes. El objetivo de este trabajo fue identificar un agente atípico en un caso de onicomicosis y detectar su presencia en el suelo del jardín del hogar de la paciente. Para esto, las muestras clínicas se obtuvieron por raspado subungueal del primer dedo del pie derecho, y las muestras de suelo, de diferentes sectores del jardín. La identificación de las especies se realizó por morfofisiología y para la confirmación molecular se envió una de las cepas aisladas de la uña de la paciente al CBS (14.062. Se identificó S. pallida complex tanto de las muestras de uña como de aquellas provenientes del suelo del jardín.

  5. Body size and symbiotic status influence gonad development in Aiptasia pallida anemones.

    Science.gov (United States)

    Carlisle, Judith F; Murphy, Grant K; Roark, Alison M

    2017-01-01

    Pale anemones ( Aiptasia pallida ) coexist with dinoflagellates (primarily Symbiodinium minutum ) in a mutualistic relationship. The purpose of this study was to investigate the role of these symbionts in gonad development of anemone hosts. Symbiotic and aposymbiotic anemones were subjected to light cycles that induced gametogenesis. These anemones were then sampled weekly for nine weeks, and gonad development was analyzed histologically. Anemone size was measured as mean body column diameter, and oocytes or sperm follicles were counted for each anemone. Generalized linear models were used to evaluate the influence of body size and symbiotic status on whether gonads were present and on the number of oocytes or sperm follicles produced. Body size predicted whether gonads were present, with larger anemones being more likely than smaller anemones to develop gonads. Both body size and symbiotic status predicted gonad size, such that larger and symbiotic anemones produced more oocytes and sperm follicles than smaller and aposymbiotic anemones. Overall, only 22 % of aposymbiotic females produced oocytes, whereas 63 % of symbiotic females produced oocytes. Similarly, 6 % of aposymbiotic males produced sperm follicles, whereas 60 % of symbiotic males produced sperm follicles. Thus, while gonads were present in 62 % of symbiotic anemones, they were present in only 11 % of aposymbiotic anemones. These results indicate that dinoflagellate symbionts influence gonad development and thus sexual maturation in both female and male Aiptasia pallida anemones. This finding substantiates and expands our current understanding of the importance of symbionts in the development and physiology of cnidarian hosts.

  6. Climate change is predicted to alter the current pest status of Globodera pallida and G. rostochiensis in the United Kingdom

    Czech Academy of Sciences Publication Activity Database

    Jones, L.; Koehler, A.-K.; Trnka, Miroslav; Balek, Jan; Challinor, A. J.; Atkinson, H. J.; Urwin, P.

    2017-01-01

    Roč. 23, č. 11 (2017), s. 4497-4507 ISSN 1354-1013 Institutional support: RVO:86652079 Keywords : climate change * Globodera pallida * Globodera rostochiensis * plant pathogens * potato cyst nematode * soil temperature simulations * soil-borne pests Subject RIV: EH - Ecology, Behaviour OBOR OECD: Environmental sciences (social aspects to be 5.7) Impact factor: 8.502, year: 2016

  7. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

    KAUST Repository

    Cotton, James A; Lilley, Catherine J; Jones, Laura M; Kikuchi, Taisei; Reid, Adam J; Thorpe, Peter; Tsai, Isheng J; Beasley, Helen; Blok, Vivian; Cock, Peter J A; den Akker, Sebastian Eves-van; Holroyd, Nancy; Hunt, Martin; Mantelin, Sophie; Naghra, Hardeep; Pain, Arnab; Palomares-Rius, Juan E; Zarowiecki, Magdalena; Berriman, Matthew; Jones, John T; Urwin, Peter E

    2014-01-01

    -knot nematodes are the two most important plant parasitic nematode groups and together represent a global threat to food security. Results: We present the complete genome sequence of G. pallida, together with transcriptomic data from most of the nematode life

  8. Biofumigation for control of pale potato cyst nematodes: activity of brassica leaf extracts and green manures on Globodera pallida in vitro and in soil.

    Science.gov (United States)

    Lord, James S; Lazzeri, Luca; Atkinson, Howard J; Urwin, Peter E

    2011-07-27

    The effects of brassica green manures on Globodera pallida were assessed in vitro and in soil microcosms. Twelve of 22 brassica accessions significantly inhibited the motility of G. pallida infective juveniles in vitro. Green manures of selected brassicas were then incorporated into soil containing encysted eggs of G. pallida. Their effect on egg viability was estimated by quantifying nematode actin 1 mRNA by RT-qPCR. The leaf glucosinolate profiles of the plants were determined by high-performance liquid chromatography. Three Brassica juncea lines (Nemfix, Fumus, and ISCI99) containing high concentrations of 2-propenyl glucosinolate were the most effective, causing over 95% mortality of encysted eggs of G. pallida in polyethylene-covered soil. The toxic effects of green manures were greater in polyethylene-covered than in open soil. Toxicity in soil correlated with the concentration of isothiocyanate-producing glucosinolate but not total glucosinolate in green manures.

  9. The physiology and biochemistry of the Laminaria pallida/Carpoblepharis minima and Ecklonia maxima/Suhria vittata associations from south-western Cape waters, South Africa

    International Nuclear Information System (INIS)

    Stacey, V.J.

    1984-01-01

    The two laminarian brown algae Laminaria pallida Grev. ex. J. Ag. and Ecklonia maxima were studied. The red algae, growing attached to the brown algae namely, Carpoblepharis minima Bart. and Suhria vittata (L.) J. Ag. Pallida/C. minima and E. maxima/S. vittata associations were studied. Carpoblepharis minima has only been observed on L. pallida, whereas S. vittata has been found attached to various substrates as well as to E. maxima. Physiological studies were undertaken on both brown and red algae. Translocation was found to occur in the brown algae at a velocity of 50-100mm h- 1 in L. pallida and 240-300mm h- 1 in E. maxima after incubation in seawater containing 14 C-sodium bicarbonate (1μCi ml- 1 ). Movement of 14 C-assimilates in L. pallida was slower than in E. maxima probably due to a difference in the medulla structure. The only 14 C-labelled assimilates in the brown/red algal association were the acyclic polyol mannitol and certain amino acids. Mannitol was the major translocant in L. pallida and E. maxima. The mannitol concentration varied seasonally. Studies using 15 N-potassium nitrate showed that the major 'free' amino acids in L. pallida were alanine, glutamic acid and histadine, whereas in E. maxima they were alanine, glutamic acid and glutamine. The red algae contained mannitol and the major 'free' aminoacids were alanine, glutamine and histadine in C. minima and glutamine, glutamic acid and glycine in S. vittata. Both red algae were found to possess photosynthetic pigments, undergo 14 C-assimilation and to incorporate exogenously supplied mannitol. There was transfer of the 14 C-labelled assimilates of photosynthesis from the brown to the red algal partner in the L. pallida/C. minima association, but this did not occur in th E. maxima/S. vittata relationship

  10. Complete genome sequence of Isosphaera pallida type strain (IS1BT)

    Energy Technology Data Exchange (ETDEWEB)

    Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Cleland, David M [ORNL; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Lapidus, Alla L. [Joint Genome Institute, Walnut Creek, California; Nolan, Matt [Joint Genome Institute, Walnut Creek, California; Lucas, Susan [Joint Genome Institute, Walnut Creek, California; Hammon, Nancy [Joint Genome Institute, Walnut Creek, California; Deshpande, Shweta [Joint Genome Institute, Walnut Creek, California; Cheng, Jan-Fang [Joint Genome Institute, Walnut Creek, California; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [Joint Genome Institute, Walnut Creek, California; Liolios, Konstantinos [Joint Genome Institute, Walnut Creek, California; Pagani, Ioanna [Joint Genome Institute, Walnut Creek, California; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Chen, Amy [Joint Genome Institute, Walnut Creek, California; Palaniappan, Krishna [Joint Genome Institute, Walnut Creek, California; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Chang, Yun-Juan [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Detter, J. Chris [Joint Genome Institute, Walnut Creek, California; Beck, Brian [ATCC - American Type Culture Collection; Woyke, Tanja [Joint Genome Institute, Walnut Creek, California; Bristow, James [Joint Genome Institute, Walnut Creek, California; Eisen, Jonathan [Joint Genome Institute, Walnut Creek, California; Markowitz, Victor [Joint Genome Institute, Walnut Creek, California; Hugenholtz, Philip [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [Joint Genome Institute, Walnut Creek, California; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

    2011-01-01

    Isosphaera pallida (ex Woronichin 1927) Giovannoni et al. 1995 is the type species of the genus Isosphaera. The species is of interest because it was the first heterotrophic bacterium known to be phototactic, and it occupies an isolated phylogenetic position within the Planctomycetaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the genus Isosphaera and the third of a member of the family Planctomycetaceae. The 5,472,964 bp long chromosome and the 56,340 bp long plasmid with a total of 3,763 protein-coding and 60 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.

  11. LAMINARIA PALLIDA

    African Journals Online (AJOL)

    user

    2010-05-05

    May 5, 2010 ... In this field study, the effect of harvesting kelp by cutting the ... each, with the various treatment plants receiving different coloured tags (blue, white, yellow and red ..... FAO species identification field guide for fishery purposes.

  12. Potential of the Trad-MCN assay applied with inflorescences of Tradescantia pallida 'Purpurea' for evaluating air contamination by naphthalene.

    Science.gov (United States)

    Alves, Edenise Segala; de Souza, Silvia Ribeiro; Pedroso, Andrea Nunes Vaz; Domingos, Marisa

    2008-11-01

    The aims of this study were to determine clastogenic responses of Tradescantia pallida cv. Purpurea to naphthalene (NAPH) by means of the bioassay Trad-MCN with inflorescences of T. pallida cv. Purpurea and to verify if this assay might be an indicator of the potential risk imposed in a workplace, where solid insecticide containing NAPH is usually applied. The clastogenic potential of NAPH was assessed by using static and dynamic experimental systems. In both systems, increased micronucleus frequencies were observed in inflorescences submitted to increasing concentrations of solid or gaseous NAPH. The evident clastogenicity verified in inflorescences exposed experimentally to 25-50 mg m(-3) of NAPH during 6h points to a narrow threshold of plant sensitivity, indicating risks under lower NAPH levels than the standards established by OSHA and therefore revealing its suitability for biomonitoring purposes. However, the clastogenic risk should be carefully investigated by other monitoring methods if human health is taken into consideration.

  13. The effect of linalool on second-stage juveniles of the potato cyst nematodes Globodera rostochiensis and G. pallida.

    Science.gov (United States)

    Būda, Vincas; Cepulytė-Rakauskienė, Rasa

    2011-09-01

    Linalool is either a toxic compound to a few species of plant parasitic nematodes or attractive to entomopathogenic nematodes. This compound is produced and emitted by several host plants of Globodera rostochiensis and G. pallida, the potato cyst nematodes (PCN). With the aim to reveal the effect of linalool on PCN, laboratory assays were carried out. Survival of PCN second-stage juveniles (J2s) in water + linalool control did not differ; thus, proving linalool to be nontoxic to PCN. Behavioral assays carried out in Petri dishes revealed attractiveness in the form of positive response of J2s of both PCN species towards linalool. Based on these behavioral assays, sensitivity to linalool of G. rostochiensis J2s was higher compared with that of G. pallida J2s. Linalool is the first compound of plant origin to elicit positive response in both PCN species.

  14. The influence of "host release factor" on carbon release by zooxanthellae isolated from fed and starved Aiptasia pallida (Verrill).

    Science.gov (United States)

    Davy, S K; Cook, C B

    2001-06-01

    Symbiotic dinoflagellates (zooxanthellae) typically respond to extracts of host tissue with enhanced release of short-term photosynthetic products. We examined this "host release factor" (HRF) response using freshly isolated zooxanthellae of differing nutritional status. The nutritional status was manipulated by either feeding or starving the sea anemone Aiptasia pallida (Verrill). The release of fixed carbon from isolated zooxanthellae was measured using 14C in 30 min experiments. Zooxanthellae in filtered seawater alone released approximately 5% of photosynthate irrespective of host feeding history. When we used a 10-kDa ultrafiltrate of A. pallida host tissue as a source of HRF, approximately 14% of photosynthate was released to the medium. This increased to over 25% for zooxanthellae from anemones starved for 29 days or more. The cell-specific photosynthetic rate declined with starvation in these filtrate experiments, but the decline was offset by the increased percentage release. Indeed, the total amount of released photosynthate remained unchanged, or even increased, as zooxanthellae became more nutrient deficient. Similar trends were also observed when zooxanthellae from A. pallida were incubated in a 3-kDa ultrafiltrate of the coral Montastraea annularis, suggesting that HRF in the different filtrates operated in a similar manner. Our results support the suggestion that HRF diverts surplus carbon away from storage compounds to translocated compounds such as glycerol.

  15. Progressive metabolic impairment underlies the novel nematicidal action of fluensulfone on the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Kearn, James; Lilley, Catherine; Urwin, Peter; O'Connor, Vincent; Holden-Dye, Lindy

    2017-10-01

    Fluensulfone is a new nematicide with an excellent profile of selective toxicity against plant parasitic nematodes. Here, its effects on the physiology and biochemistry of the potato cyst nematode Globodera pallida have been investigated and comparisons made with its effect on the life-span of the free-living nematode Caenorhabditis elegans to provide insight into its mode of action and its selective toxicity. Fluensulfone exerts acute effects (≤1h; ≥100μM) on stylet thrusting and motility of hatched second stage G. pallida juveniles (J2s). Chronic exposure to lower concentrations of fluensulfone (≥3days; ≤30μM), reveals a slowly developing metabolic insult in which G. pallida J2s sequentially exhibit a reduction in motility, loss of a metabolic marker for cell viability, high lipid content and tissue degeneration prior to death. These effects are absent in adults and dauers of the model genetic nematode Caenorhabditis elegans. The nematicidal action of fluensulfone follows a time-course which progresses from an early impact on motility through to an accumulating metabolic impairment, an inability to access lipid stores and death. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

  16. RAPD and microsatellite transferability studies in selected species of Prosopis (section Algarobia) with emphasis on Prosopis juliflora and P. pallida.

    Science.gov (United States)

    Sherry, Minu; Smith, Steve; Patel, Ashok; Harris, Phil; Hand, Paul; Trenchard, Liz; Henderson, Janey

    2011-08-01

    The genus Prosopis (Leguminosae, Mimosoideae), comprises 44 species widely distributed in arid and semi-arid zones. Prosopis pallida (Humb. and Bonpl. ex Willd.) Kunth and P. juliflora (Sw.) DC. are the two species that are truly tropical apart from P. africana, which is native to tropical Africa (Pasiecznik et al. 2004), and they have been introduced widely beyond their native ranges. However, taxonomic confusion within the genus has hampered exploitation and better management of the species. The present study focusses primarily on evaluating the genetic relationship between Prosopis species from the section Algarobia, containing most species of economic importance, though P. tamarugo from section Strombocarpa is also included for comparison. In total, 12 Prosopis species and a putative P. pallida x P. chilensis hybrid were assessed for their genetic relationships based on RAPD markers and microsatellite transferability. The results show that P. pallida and P. juliflora are not closely related despite some morphological similarity. Evidence also agrees with previous studies which suggest that the grouping of series in section Algarobia is artificial.

  17. Non-nematode-derived double-stranded RNAs induce profound phenotypic changes in Meloidogyne incognita and Globodera pallida infective juveniles.

    Science.gov (United States)

    Dalzell, Johnathan J; McMaster, Steven; Johnston, Michael J; Kerr, Rachel; Fleming, Colin C; Maule, Aaron G

    2009-11-01

    Nine non-nematode-derived double-stranded RNAs (dsRNAs), designed for use as controls in RNA interference (RNAi) screens of neuropeptide targets, were found to induce aberrant phenotypes and an unexpected inhibitory effect on motility of root knot nematode Meloidogyne incognita J2s following 24h soaks in 0.1 mg/ml dsRNA; a simple soaking procedure which we have found to elicit profound knockdown of neuronal targets in Globodera pallida J2s. We have established that this inhibitory phenomenon is both time- and concentration-dependent, as shorter 4h soaks in 0.1 mg/ml dsRNA had no negative impact on M. incognita J2 stage worms, yet a 10-fold increase in concentration to 1 mg/ml for the same 4h time period had an even greater qualitative and quantitative impact on worm phenotype and motility. Further, a 10-fold increase of J2s soaked in 0.1 mg/ml dsRNA did not significantly alter the observed phenotypic aberration, which suggests that dsRNA uptake of the soaked J2s is not saturated under these conditions. This phenomenon was not initially observed in potato cyst nematode G. pallida J2s, which displayed no aberrant phenotype, or diminution of migratory activity in response to the same 0.1 mg/ml dsRNA 24h soaks. However, a 10-fold increase in dsRNA to 1mg/ml was found to elicit comparable irregularity of phenotype and inhibition of motility in G. pallida, to that initially observed in M. incognita following a 24h soak in 0.1 mg/ml dsRNA. Again, a 10-fold increase in the number of G. pallida J2s soaked in the same volume of 1 mg/ml dsRNA preparation did not significantly affect the observed phenotypic deviation. We do not observe any global impact on transcript abundance in either M. incognita or G. pallida J2s following 0.1 mg/ml dsRNA soaks, as revealed by reverse transcriptase-PCR and quantitative PCR data. This study aims to raise awareness of a phenomenon which we observe consistently and which we believe signifies a more expansive deficiency in our knowledge and

  18. Intoxicação experimental por folhas de Crotalaria pallida (mucronata em ovinos

    Directory of Open Access Journals (Sweden)

    Vanessa Borelli

    Full Text Available RESUMO: Descrevem-se o quadro clínico, patológico e o potencial tóxico das folhas verdes de Crotalaria pallida em ovinos. Para o experimento folhas verdes de C. pallida foram coletadas no município de São João do Sul em Santa Catarina e administradas por via oral para seis ovinos adultos, em doses únicas de 40, 20, 10, 5, 2,5 e 2,5g/kg, e para dois ovinos, em doses diárias de 0,63 e 1,25g/kg durante 30 dias. Reproduziu-se a intoxicação com doses letais a partir de 2,5g/kg. Um dos ovinos que recebeu a dose única de 2,5g/kg e os que receberam as doses diárias, não adoeceram. Todos os ovinos que apresentaram sinais clínicos morreram entre 13 e 22 horas após a administração das folhas. Sinais clínicos leves como fezes pastosas, inquietação e aumento das frequências cardíaca e respiratória tiveram início cerca em 11 horas após a ingestão da planta. Minutos antes da morte observaram-se dispneia intensa com respiração abdominal pronunciada. As principais lesões macroscópicas foram restritas à cavidade torácica, como hidrotórax e edema pulmonar acentuado. O exame microscópico revelou no pulmão, edema acentuado e difuso na superfície pleural, nos espaços interlobulares e ao redor das artérias peribronquiais e peribronquiolares. Edema multifocal foi observado no interior de alvéolos e ao redor de brônquios e bronquíolos, além de leve infiltrado neutrofílico multifocal. O quadro clínico-patológico da intoxicação experimental foi similar ao observado na intoxicação espontânea e caracterizou-se por edema iulmonar acentuado e morte logo após o início dos sinais clínicos.

  19. Enhancement of the efficacy of a carbamate nematicide against the potato cyst nematode, Globodera pallida, through mycorrhization in commercial potato fields.

    Science.gov (United States)

    Deliopoulos, T; Minnis, S T; Jones, P W; Haydock, P P J

    2010-03-01

    Two experiments were conducted over 2 years in commercial potato fields in Shropshire, UK, to evaluate the compatibility of the nematicide aldicarb with commercial inocula of arbuscular mycorrhizal fungi (AMF) in the control of the potato cyst nematode Globodera pallida. The AMF used were Vaminoc (mixed-AMF inoculum), Glomus intraradices (BioRize BB-E) and G. mosseae (isolate BEG 12). In the absence of AMF, the in-soil hatch of G. pallida increased 30% (P potato (cv. Golden Wonder) tubers with AMF eliminated this delay in G. pallida hatch by stimulating a mean increase of 32% (P < 0.01) in hatch within 2 wk after planting. In the aldicarb-treated plots in Experiment 1, G. pallida multiplication rate was 38% lower (P < 0.05) in roots of AMF-inoculated than noninoculated plants, but in Experiment 2, this effect was slightly lower (P = 0.07). In these plots, the single AMF inocula showed also a weak trend (P = 0.10) towards greater tuber yields relative to their noninoculated counterparts. Mycorrhization therefore appears to enhance the efficacy of carbamate nematicides against G. pallida and consequently more research is proposed to validate these findings and fully explore the potential of this model.

  20. Use of a barbed tool by an adult and a juvenile woodpecker finch (Cactospiza pallida).

    Science.gov (United States)

    Sabine, Tebbich; Irmgard, Teschke; Erica, Cartmill; Sophia, Stankewitz

    2012-02-01

    Here we describe the modification and use of a new tool type in the woodpecker finch (Cactospiza pallida). This species is known to habitually use twigs or cactus spines to extract arthropods out of tree holes. We observed an adult and a juvenile bird using several barbed twigs from introduced blackberry bushes (Rubus niveus) which the adult bird had first modified by removing leaves and side twigs. The barbs of blackberry tools provide a novel functional feature not present in tools made from native plants and de-leafing of twigs never has been observed before. Both birds were observed using several of these tools to extract prey from under the bark of the native scalesia tree (Scalesia penduculta). They oriented the twigs such that the barbs pointed towards themselves; this rendered the barbs functional as they could be used to drag prey out of a crevice. The juvenile bird first watched the adult using the tool and then used the tool that the adult bird had left under the bark at the same location and in the same way as the adult. Our observation highlights the fact that opportunities for the transmission of social information do occur in the wild and indicates that woodpecker finches are flexible in their choice of tool material and tool modification. Copyright © 2011 Elsevier B.V. All rights reserved.

  1. Inbreeding and population structure of the potato cyst nematode (Globodera pallida) in its native area (Peru).

    Science.gov (United States)

    Picard, D; Plantard, O; Scurrah, M; Mugniery, D

    2004-10-01

    The dispersal abilities and the population genetic structure of nematodes living in the soil are poorly known. In the present study, we have pursued these issues in the potato cyst nematode Globodera pallida, which parasitizes potato roots and is indigenous to South America. A hierarchical sampling regime was conducted in Peru to investigate gene flow on regional, field and plant scales. Multilocus genotypes of single individuals were obtained using eight polymorphic microsatellites markers. Large heterozygote deficiencies were observed at most loci. The limited active dispersal of larvae from their cyst, which favours mating between (half) siblings, could be responsible for this pattern. Within fields, as well as among fields within regions (even 35 km apart), low F(ST) values suggest extensive gene flow. Among fields within regions, only 1.5-4.4% genetic variability was observed. Passive dispersal of cysts by natural means (wind, running water, or wild animals) or by anthropogenic means (tillage, movement of infected seed tubers) is probably responsible for the results observed. Among regions, high F(ST) values were observed. Thus long-range dispersal (more than 320 km apart) is probably limited by major biogeographical barriers such as the mountains found in the Andean Cordillera. These results provide useful information for the management of resistant varieties, to slow down the emergence and spread of resistance-breaking pathotypes.

  2. PCR-RFLP method to distinguish Frankliniella occidentalis, Frankliniella intonsa, Frankliniella pallida and Frankliniella tenuicornis

    Directory of Open Access Journals (Sweden)

    Przybylska Arnika

    2016-01-01

    Full Text Available Thrips from the genus Frankliniella (Thysanoptera, Thripidae are phytophagous on crops and wild plants. Some of them cause slight economic damage, however, others including F. occidentalis and F. intonsa are responsible for considerable losses in crop production. Moreover, they constitute a double threat for host plants by not only feeding on them but also vectoring viruses, some of which are on the quarantined list of the European Plant Protection Organization. The rapid detection and differentiation between more and less harmful Frankliniella species is, therefore, important in order to combat the pests at the time of their appearance. In this study, we have undertaken to develop a method of detecting F. occidentalis, F. intonsa, F. pallida, and F. tenuicornis. The protocol is based on PCR amplification of ITS1 rDNA fragments of these insects using universal primers pair giving products of slightly distinct length for studied insects. Restriction enzymes digestion which is easy to interpret, allows for visible differentiation of all these Frankliniella species. The method was shown to be species-specific and sensitive. Even single specimens in either the larvae or adult stage could be distinguished.

  3. Holding tight on feathers - structural specializations and attachment properties of the avian ectoparasite Crataerina pallida (Diptera, Hippoboscidae).

    Science.gov (United States)

    Petersen, Dennis S; Kreuter, Nils; Heepe, Lars; Büsse, Sebastian; Wellbrock, Arndt H J; Witte, Klaudia; Gorb, Stanislav N

    2018-04-30

    The louse fly Crataerina pallida is an obligate blood-sucking ecto-parasite of the common swift Apus apus Due to reduction of the wings, C. pallida is unable to fly, thus an effective and reliable attachment to their host's plumage is of outmost importance. Its attachment system shows several modifications in comparison to other calyptrate flies. The most prominent ones are the large tridentate claws and the dichotomously shaped setae located on the pulvilli. Based on data from morphological analysis, confocal laser scanning microscopy, cryo-scanning electron microscopy and traction force experiments, performed on native (feathers) as well as artificial substrates (glass, epoxy-resin and silicone rubber), we showed that the entire attachment system is highly adapted to the fly's lifestyle as an ectoparasite. The claws in particular are the main contributor to strong attachment to the host. Resulting attachment forces on feathers make it impossible to detach C. pallida without damage of feathers or legs of the fly itself. Well-developed pulvilli are responsible for the attachment to smooth surfaces. Both dichotomously shaped setae and high setal density explain high safety factors observed on smooth substrates. For the first time, we demonstrated a material gradient within the setae with soft, resilin dominated apical tips and stiff, more sclerotized bases in Diptera. The empodium seems not to be directly involved in the attachment process, but it might operate as a cleaning device and may be essential to maintain the functionality of the entire attachment system. © 2018. Published by The Company of Biologists Ltd.

  4. Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes.

    Science.gov (United States)

    Palomares-Rius, Juan E; Hedley, Pete E; Cock, Peter J A; Morris, Jenny A; Jones, John T; Vovlas, Nikos; Blok, Vivian

    2012-12-01

    The potato cyst nematodes (PCNs) Globodera pallida and Globodera rostochiensis are important parasites of potato. PCNs undergo complex biotrophic interactions with their hosts that involve gene expression changes in both the nematode and the host plant. The aim of this study was to determine key genes that are differentially expressed in Globodera pallida life cycle stages and during the initiation of the feeding site in susceptible and partially resistant potato genotypes. For this purpose, two microarray experiments were designed: (i) a comparison of eggs, infective second-stage juveniles (J2s) and sedentary parasitic-stage J2s (SJ2); (ii) a comparison of SJ2s at 8 days after inoculation (DAI) in the susceptible cultivar (Desirée) and two partially resistant lines. The results showed differential expression of G. pallida genes during the stages studied, including previously characterized effectors. In addition, a large number of genes changed their expression between SJ2s in the susceptible cultivar and those infecting partially resistant lines; the number of genes with modified expression was lower when the two partially resistant lines were compared. Moreover, a histopathological study was performed at several time points (7, 14 and 30 DAI) and showed the similarities between both partially resistant lines with a delay and degeneration in the formation of the syncytia in comparison with the susceptible cultivar. Females at 30 DAI in partially resistant lines showed a delay in their development in comparison with those in the susceptible cultivar. © 2012 THE AUTHORS. MOLECULAR PLANT PATHOLOGY © 2012 BSPP AND BLACKWELL PUBLISHING LTD.

  5. Evidence of animal mtDNA recombination between divergent populations of the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Hoolahan, Angelique H; Blok, Vivian C; Gibson, Tracey; Dowton, Mark

    2012-03-01

    Recombination is typically assumed to be absent in animal mitochondrial genomes (mtDNA). However, the maternal mode of inheritance means that recombinant products are indistinguishable from their progenitor molecules. The majority of studies of mtDNA recombination assess past recombination events, where patterns of recombination are inferred by comparing the mtDNA of different individuals. Few studies assess contemporary mtDNA recombination, where recombinant molecules are observed as direct mosaics of known progenitor molecules. Here we use the potato cyst nematode, Globodera pallida, to investigate past and contemporary recombination. Past recombination was assessed within and between populations of G. pallida, and contemporary recombination was assessed in the progeny of experimental crosses of these populations. Breeding of genetically divergent organisms may cause paternal mtDNA leakage, resulting in heteroplasmy and facilitating the detection of recombination. To assess contemporary recombination we looked for evidence of recombination between the mtDNA of the parental populations within the mtDNA of progeny. Past recombination was detected between a South American population and several UK populations of G. pallida, as well as between two South American populations. This suggests that these populations may have interbred, paternal mtDNA leakage occurred, and the mtDNA of these populations subsequently recombined. This evidence challenges two dogmas of animal mtDNA evolution; no recombination and maternal inheritance. No contemporary recombination between the parental populations was detected in the progeny of the experimental crosses. This supports current arguments that mtDNA recombination events are rare. More sensitive detection methods may be required to adequately assess contemporary mtDNA recombination in animals.

  6. In vitro antioxidant and free radical scavenging activity of different parts of Tabebuia pallida growing in Bangladesh.

    Science.gov (United States)

    Rahman, Md Mahbubur; Islam, Md Badrul; Biswas, Mohitosh; Khurshid Alam, A H M

    2015-10-30

    In humans, many diseases are associated with the accumulation of free radicals. Antioxidants can scavenge free radicals and minimize their impact. Therefore, the search for naturally occurring antioxidants of plant origin is imperative. Here, we aimed to investigate the antioxidant and free radical scavenging properties of methanolic extracts from Tabebuia pallida (T. pallida) stem bark (TPSB), root bark (TPRB), leaves (TPL), and flowers (TPF). The antioxidant and free radical scavenging activity were determined by several standard methods using spectrophotomer. Total phenolic and flavonoid contents were estimated using Folin-Ciocalteu reagent and aluminum chloride colorimetric assay methods, respectively. Among the extracts, TPL showed the highest total antioxidant capacity followed by TPRB, TPF, and TPSB. Based on DPPH and hydroxyl radical scavenging activity, TPL showed strong scavenging activity (91.05 ± 1.10 and 62.00 ± 0.57) with IC50 of 9.20 ± 0.28 and 46.00 ± 2.84 μg/mL, respectively when compared with standard BHT (IC50 of 7.00 ± 0.25 μg/mL) and CA (75.00 ± 0.14 μg/mL). These results suggest that TPL had the highest radical scavenging activity among the extractives that closely resembled the standard's. In lipid peroxidation inhibition assay, TPL exhibited the most potent inhibitory activity (83.18 ± 2.12 %) with IC50 of 12.00 ± 2.12 μg/mL, which closely resembled standard CA (IC50 of 10.50 ± 0.28 μg/mL). Also, the reducing capacity on ferrous ion was in the following order: TPL > TPRB > TF > TPSB. The phenolic and flavonoid contents of TPL were higher than other extractives. A positive correlation (p value free radical (DPPH(·) and (·)OH) scavenging efficiencies and lipid peroxidation inhibition activity. Methanolic extract of T. pallida leaf is a potential source of natural antioxidants and serves as an effective free radical scavenger and/or inhibitor. Hence, T. pallida might be a good plant-based pharmaceutical product for several

  7. A new method based on supercritical fluid extraction for polyacetylenes and polyenes from Echinacea pallida (Nutt.) Nutt. roots.

    Science.gov (United States)

    Tacchini, Massimo; Spagnoletti, Antonella; Brighenti, Virginia; Prencipe, Francesco Pio; Benvenuti, Stefania; Sacchetti, Gianni; Pellati, Federica

    2017-11-30

    The genus Echinacea (Asteraceae) includes species traditionally used in phytotherapy. Among them, Echinacea pallida (Nutt.) Nutt. root extracts are characterized by a representative antiproliferative activity, due to the presence of acetylenic compounds. In this study, supercritical fluid extraction (SFE) was applied and compared with conventional Soxhlet extraction (SE) in order to obtain a bioactive extract highly rich in polyacetylenes and polyenes from E. pallida roots. The composition of the extracts was monitored by means of HPLC-UV/DAD and HPLC-ESI-MS n by using an Ascentis Express C 18 column (150mm×3.0mm I.D., 2.7μm, Supelco, Bellefonte, PA, USA) with a mobile phase composed of (A) water and (B) acetonitrile, under gradient elution. By keeping SFE time at the threshold of 1h (15min static and 45min dynamic for 1 cycle) with the oven temperature set at 40-45°C and 90bar of pressure, an overall extraction yield of 1.18-1.21% (w/w) was obtained, with a high selectivity for not oxidized lipophilic compounds. The biological activity of the extracts was evaluated against human non-small lung A549 and breast carcinoma MCF-7 cancer cell lines. The cytotoxic effect of the SFE extract was more pronounced towards the MCF-7 than the A549 cancer cells, with IC 50 values ranging from 21.01±2.89 to 31.11±2.l4μg/mL; cell viability was affected mainly between 24 and 48h of exposure. The results show the possibility of a new "green" approach to obtain extracts highly rich in genuine polyacetylenes and polyenes from E. pallida roots. The bioactivity evaluation confirmed the cytotoxicity of E. pallida extracts against the considered cancer cell lines, especially against MCF-7 cells, thus suggesting to represent a valuable tool for applicative purposes in cancer prevention. Copyright © 2017 Elsevier B.V. All rights reserved.

  8. LECTINS OF REPRESENTATIVES OF THE ECHINACEA GENUS (ECHINACEA MOENCH). 3. RESEARCH OF ACTIVITY IN ONTOGENESIS ECHINACEA PALLIDA (NUTT.) NUTT

    OpenAIRE

    Поспелов, Сергей Викторович

    2013-01-01

    For the first time research of dynamics of lectins activity of pale purple coneflower (Echinacea pallida (Nutt.) Nutt) in ontogenesis. It has been established that on the first year of vegetation the highest level of phytolectins observed in herbs at the second part of vegetation (14,0–16,0 point). In the roots with rhizomes lectins were appears only at the end of vegetation (up to 2,0 point). In the second year in the genesic period some high activity was observed of leave’s extracts at the ...

  9. Spatial variation of epoxyscillirosidine concentrations in Moraea pallida (yellow tulp in South Africa

    Directory of Open Access Journals (Sweden)

    Christo J. Botha

    2013-05-01

    Full Text Available Moraea pallida (yellow tulp poisoning is economically the most important intoxication of livestock in South Africa. Poisoning varies according to locality, climatic conditions and growth stage of the plant. The primary objective of this study was to determine the concentration of the toxic principle, epoxyscillirosidine, in yellow tulp leaves and to ascertain the variability of epoxyscillirosidine concentrations within and between different locations. A secondary objective was to utilise Geographic Information Systems in an attempt to explain the variability in toxicity. Flowering yellow tulp plants were collected at 26 sampling points across 20 districts of South Africa. The leaves of five plants per sampling point were extracted and submitted for liquid chromatography/mass spectrometry analysis. A large variation in mean epoxyscillirosidine concentrations, ranging from 3.32 μg/g – 238.27 μg/g, occurred between different geographical regions. The epoxyscillirosidine concentrations also varied tremendously between individual plants (n= 5 collected at the same sampling point, with up to a 24 times difference between the lowest and highest concentration detected. No generalised correlation between epoxyscillirosidine concentrations and soil elemental concentrations could be established. However, samples obtained from the north-eastern part of the sampling region tended to have higher epoxyscillirosidine concentrations compared to samples obtained from the south-western part of the sampling region. Higher toxin concentrations in the northeast were associated with statistically significant higher soil concentrations of iron, bismuth, bromide, cadmium, chromium, rubidium, tellurium, thallium, titanium and zinc, whilst soil concentrations of strontium and soil pH, were significantly lower. This study corroborated the contention that epoxyscillirosidine concentration in yellow tulp fluctuates and may explain the variability in toxicity.

  10. A Spatial Analysis of the Potato Cyst Nematode Globodera pallida in Idaho.

    Science.gov (United States)

    Dandurand, Louise-Marie; Contina, Jean Bertrand; Knudsen, Guy R

    2018-03-13

    The potato cyst nematode (PCN), Globodera pallida, is a globally regulated and quarantine potato pest. It was detected for the first time in the U.S. in the state of Idaho in 2006. A spatial analysis was performed to: (i) understand the spatial arrangement of PCN infested fields in southern Idaho using spatial point pattern analysis; and (ii) evaluate the potential threat of PCN for entry to new areas using spatial interpolation techniques. Data point locations, cyst numbers and egg viability values for each infested field were collected by USDA-APHIS during 2006-2014. Results showed the presence of spatially clustered PCN infested fields (P = 0.003). We determined that the spread of PCN grew in diameter from the original center of infestation toward the southwest as an ellipsoidal-shaped cluster. Based on the aggregated spatial pattern of distribution and the low extent level of PCN infested fields in southern Idaho, we determined that PCN spread followed a contagion effect scenario, where nearby infested fields contributed to the infestation of new fields, probably through soil contaminated agricultural equipment or tubers. We determined that the recent PCN presence in southern Idaho is unlikely to be associated with new PCN entry from outside the state of Idaho. The relative aggregation of PCN infested fields, the low number of cysts recovered, and the low values in egg viability facilitate quarantine activities and confine this pest to a small area, which, in 2017, is estimated to be 1,233 hectares. The tools and methods provided in this study should facilitate comprehensive approaches to improve PCN control and eradication programs as well as to raise public awareness about this economically important potato pest.

  11. Increased cell proliferation and mucocyte density in the sea anemone Aiptasia pallida recovering from bleaching.

    Directory of Open Access Journals (Sweden)

    David Fransolet

    Full Text Available Recovery of coral after bleaching episodes is a critical period for the health of the reef ecosystem. While events such as symbiont (genus Symbiodinium shifting/shuffling or tissue apoptosis have been demonstrated to occur following bleaching, little is known concerning tissue recovery or cell proliferation. Here, we studied the sea anemone Aiptasia pallida exposed to a transient elevation of water temperature combined with high illumination (33°C and 1900 µmol photons x m(-2 x s(-1 for 30 h. Following such treatment bleached anemones showed a significant reduction of their Symbiodinium density. Cell proliferation in the ectodermis and gastrodermis was determined by assessing the densities of cells labeled with a thymidine analogue (EdU. Cell proliferation significantly increased during the first day following stress in both tissue types. This increased cell proliferation returned to pre-stress values after one week. Although cell proliferation was higher in the ectodermis in absence of stress, it was relatively more pronounced in the gastrodermis of stressed anemones. In addition, the ratio of ectodermal mucocytes significantly increased three weeks after induced stress. These results suggest that thermal/photic stress coupled with the loss of the symbionts is able to enhance cell proliferation in both gastrodermis and ectodermis of cnidarians. While new cells formed in the gastrodermis are likely to host new Symbiodinium, the fate of new cells in the ectodermis was only partially revealed. Some new ectodermal cells may, in part, contribute to the increased number of mucocytes which could eventually help strengthen the heterotrophic state until restoration of the symbiosis.

  12. Genotoxicity biomonitoring of sewage in two municipal wastewater treatment plants using the Tradescantia pallida var. purpurea bioassay.

    Science.gov (United States)

    Thewes, Márcia Regina; Junior, Delio Endres; Droste, Annette

    2011-10-01

    The genotoxicity of untreated and treated sewage from two municipal wastewater treatment plants (WTP BN and WTP SJN) in the municipality of Porto Alegre, in the southern Brazilian state of Rio Grande do Sul, was evaluated over a one-year period using the Tradescantia pallida var. purpurea (Trad-MCN) bioassay. Inflorescences of T. pallida var. purpurea were exposed to sewage samples in February (summer), April (autumn), July (winter) and October (spring) 2009, and the micronuclei (MCN) frequencies were estimated in each period. The high genotoxicity of untreated sewage from WTP BN in February and April was not observed in treated sewage, indicating the efficiency of treatment at this WTP. However, untreated and treated sewage samples from WTP SJN had high MCN frequencies, except in October, when rainfall may have been responsible for reducing these frequencies at both WTPs. Physicochemical analyses of sewage from both WTPs indicated elevated concentrations of organic matter that were higher at WTP SJN than at WTP BN. Chromium was detected in untreated and treated sewage from WTP SJN, but not in treated sewage from WTP BN. Lead was found in all untreated sewage samples from WTP SJN, but only in the summer and autumn at WTP BN. These results indicate that the short-term Trad-MCN genotoxicity assay may be useful for regular monitoring of municipal WTPs.

  13. Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Jones, John T; Kumar, Amar; Pylypenko, Liliya A; Thirugnanasambandam, Amarnath; Castelli, Lydia; Chapman, Sean; Cock, Peter J A; Grenier, Eric; Lilley, Catherine J; Phillips, Mark S; Blok, Vivian C

    2009-11-01

    In this article, we describe the analysis of over 9000 expressed sequence tags (ESTs) from cDNA libraries obtained from various life cycle stages of Globodera pallida. We have identified over 50 G. pallida effectors from this dataset using bioinformatics analysis, by screening clones in order to identify secreted proteins up-regulated after the onset of parasitism and using in situ hybridization to confirm the expression in pharyngeal gland cells. A substantial gene family encoding G. pallida SPRYSEC proteins has been identified. The expression of these genes is restricted to the dorsal pharyngeal gland cell. Different members of the SPRYSEC family of proteins from G. pallida show different subcellular localization patterns in plants, with some localized to the cytoplasm and others to the nucleus and nucleolus. Differences in subcellular localization may reflect diverse functional roles for each individual protein or, more likely, variety in the compartmentalization of plant proteins targeted by the nematode. Our data are therefore consistent with the suggestion that the SPRYSEC proteins suppress host defences, as suggested previously, and that they achieve this through interaction with a range of host targets.

  14. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.

    Science.gov (United States)

    Cotton, James A; Lilley, Catherine J; Jones, Laura M; Kikuchi, Taisei; Reid, Adam J; Thorpe, Peter; Tsai, Isheng J; Beasley, Helen; Blok, Vivian; Cock, Peter J A; Eves-van den Akker, Sebastian; Holroyd, Nancy; Hunt, Martin; Mantelin, Sophie; Naghra, Hardeep; Pain, Arnab; Palomares-Rius, Juan E; Zarowiecki, Magdalena; Berriman, Matthew; Jones, John T; Urwin, Peter E

    2014-03-03

    Globodera pallida is a devastating pathogen of potato crops, making it one of the most economically important plant parasitic nematodes. It is also an important model for the biology of cyst nematodes. Cyst nematodes and root-knot nematodes are the two most important plant parasitic nematode groups and together represent a global threat to food security. We present the complete genome sequence of G. pallida, together with transcriptomic data from most of the nematode life cycle, particularly focusing on the life cycle stages involved in root invasion and establishment of the biotrophic feeding site. Despite the relatively close phylogenetic relationship with root-knot nematodes, we describe a very different gene family content between the two groups and in particular extensive differences in the repertoire of effectors, including an enormous expansion of the SPRY domain protein family in G. pallida, which includes the SPRYSEC family of effectors. This highlights the distinct biology of cyst nematodes compared to the root-knot nematodes that were, until now, the only sedentary plant parasitic nematodes for which genome information was available. We also present in-depth descriptions of the repertoires of other genes likely to be important in understanding the unique biology of cyst nematodes and of potential drug targets and other targets for their control. The data and analyses we present will be central in exploiting post-genomic approaches in the development of much-needed novel strategies for the control of G. pallida and related pathogens.

  15. Morphological and anatomical relationships in Alpine-Dinaric populations of the genus Iris L., Pallidae series (A. Kern. Trinajstić (Iridaceae

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    Bożena Mitić

    2014-01-01

    Full Text Available The relationships within the Alpine-Dinaric and cultivated populations of the genus Iris, Pallidae series, have been analysed. Seven morphological characteristics (stem length, length of the largest leaf, greatest width of the largest leaf, length of the smallest leaf, greatest width of the smallest leaf, the number of leaves and the number of flowers and seven leaf anatomical (length and width of stomata, length and width of epidermal cells, number of stomata and epidermal cells per mm'- and length of styloids have been used for this purpose. Relationships between populations were analysed by methods of multivariate statistics (Cluster, PCA and MST analyses. The results of Cluster and PCA analyses showed that, owing to leaf anatomical features, five main groups of the populations could be distinguished within the Pallidae series. Four of them belong to the species L. pallida, L. cengialti, L. illyrica and I. pseudopallida. The MST analyses showed that the fifth group contained mixed populations of I. illyrica and I. pseudopallida. The results point at the lack of taxonomic usefulness of the leaf anatomical features analysed and indicate that they caused successive geographical differentiation of the populations of the Pallidae series.

  16. Comparison of alternative methods for the control of potatoes nematodes (globodera rostochiensis and Globodera pallida) in soils of SA Pobla. Majorca, Spain

    Energy Technology Data Exchange (ETDEWEB)

    Gomila, I.; Olmo, D.; Rotger, B.; Rossello, M. I.; Nieto, A.; Rossello, J.; Lopez-Lopez, G.; Ibanez, A.; Sastre Conde, I.; Juan Serra, A.

    2009-07-01

    Among phytoparistic nematodes. Globodera rostochiensis and Globodera pallida represent one the highest problem of potato crop and as so need to be controlled years. Tradicionally, this control was performed through soil chemical disinfection before starting the crop. Nowadays most of the products used for this disinfection are eliminated from the market due to the UE directive 91/444. (Author)

  17. The diversity of anatomical diagnostical indication of medicinal plants (Echinacea pallida (Nutt.) Nutt and Echinacea purpurea (L.) Moench)

    OpenAIRE

    Kmitienė, Giedrė; Ragažinskienė, Ona

    2009-01-01

    Straipsnyje pateikiami Echinacea pallida (Nutt.) Nutt ir Echinacea purpurea (L.) Moench antžeminės dalies stiebo ir lapo lapalakščio viršutinės bei apatinės dalies organų anatominės sandaros tyrimų rezultatai. Tyrimai atlikti 2006–2009 metais Vidurio Lietuvoje, Kaune, VDU Kauno botanikos sodo Vaistinių augalų mokslo sektoriaus Vaistinių augalų kolekcijoje ir 400 m2 bandymų plote bei Vilniaus pedagoginio universiteto Gamtos mokslų fakulteto Botanikos katedroje. Ištyrus šių dviejų rūšių augalų ...

  18. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida.

    Science.gov (United States)

    Lehnert, Erik M; Burriesci, Matthew S; Pringle, John R

    2012-06-22

    Coral reefs are hotspots of oceanic biodiversity, forming the foundation of ecosystems that are important both ecologically and for their direct practical impacts on humans. Corals are declining globally due to a number of stressors, including rising sea-surface temperatures and pollution; such stresses can lead to a breakdown of the essential symbiotic relationship between the coral host and its endosymbiotic dinoflagellates, a process known as coral bleaching. Although the environmental stresses causing this breakdown are largely known, the cellular mechanisms of symbiosis establishment, maintenance, and breakdown are still largely obscure. Investigating the symbiosis using an experimentally tractable model organism, such as the small sea anemone Aiptasia, should improve our understanding of exactly how the environmental stressors affect coral survival and growth. We assembled the transcriptome of a clonal population of adult, aposymbiotic (dinoflagellate-free) Aiptasia pallida from ~208 million reads, yielding 58,018 contigs. We demonstrated that many of these contigs represent full-length or near-full-length transcripts that encode proteins similar to those from a diverse array of pathways in other organisms, including various metabolic enzymes, cytoskeletal proteins, and neuropeptide precursors. The contigs were annotated by sequence similarity, assigned GO terms, and scanned for conserved protein domains. We analyzed the frequency and types of single-nucleotide variants and estimated the size of the Aiptasia genome to be ~421 Mb. The contigs and annotations are available through NCBI (Transcription Shotgun Assembly database, accession numbers JV077153-JV134524) and at http://pringlelab.stanford.edu/projects.html. The availability of an extensive transcriptome assembly for A. pallida will facilitate analyses of gene-expression changes, identification of proteins of interest, and other studies in this important emerging model system.

  19. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida

    Directory of Open Access Journals (Sweden)

    Lehnert Erik M

    2012-06-01

    Full Text Available Abstract Background Coral reefs are hotspots of oceanic biodiversity, forming the foundation of ecosystems that are important both ecologically and for their direct practical impacts on humans. Corals are declining globally due to a number of stressors, including rising sea-surface temperatures and pollution; such stresses can lead to a breakdown of the essential symbiotic relationship between the coral host and its endosymbiotic dinoflagellates, a process known as coral bleaching. Although the environmental stresses causing this breakdown are largely known, the cellular mechanisms of symbiosis establishment, maintenance, and breakdown are still largely obscure. Investigating the symbiosis using an experimentally tractable model organism, such as the small sea anemone Aiptasia, should improve our understanding of exactly how the environmental stressors affect coral survival and growth. Results We assembled the transcriptome of a clonal population of adult, aposymbiotic (dinoflagellate-free Aiptasia pallida from ~208 million reads, yielding 58,018 contigs. We demonstrated that many of these contigs represent full-length or near-full-length transcripts that encode proteins similar to those from a diverse array of pathways in other organisms, including various metabolic enzymes, cytoskeletal proteins, and neuropeptide precursors. The contigs were annotated by sequence similarity, assigned GO terms, and scanned for conserved protein domains. We analyzed the frequency and types of single-nucleotide variants and estimated the size of the Aiptasia genome to be ~421 Mb. The contigs and annotations are available through NCBI (Transcription Shotgun Assembly database, accession numbers JV077153-JV134524 and at http://pringlelab.stanford.edu/projects.html. Conclusions The availability of an extensive transcriptome assembly for A. pallida will facilitate analyses of gene-expression changes, identification of proteins of interest, and other studies in this

  20. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

    KAUST Repository

    Cotton, James A

    2014-03-03

    Background: Globodera pallida is a devastating pathogen of potato crops, making it one of the most economically important plant parasitic nematodes. It is also an important model for the biology of cyst nematodes. Cyst nematodes and root-knot nematodes are the two most important plant parasitic nematode groups and together represent a global threat to food security. Results: We present the complete genome sequence of G. pallida, together with transcriptomic data from most of the nematode life cycle, particularly focusing on the life cycle stages involved in root invasion and establishment of the biotrophic feeding site. Despite the relatively close phylogenetic relationship with root-knot nematodes, we describe a very different gene family content between the two groups and in particular extensive differences in the repertoire of effectors, including an enormous expansion of the SPRY domain protein family in G. pallida, which includes the SPRYSEC family of effectors. This highlights the distinct biology of cyst nematodes compared to the root-knot nematodes that were, until now, the only sedentary plant parasitic nematodes for which genome information was available. We also present in-depth descriptions of the repertoires of other genes likely to be important in understanding the unique biology of cyst nematodes and of potential drug targets and other targets for their control. Conclusions: The data and analyses we present will be central in exploiting post-genomic approaches in the development of much-needed novel strategies for the control of G. pallida and related pathogens. 2014 Cotton et al.; licensee BioMed Central Ltd.

  1. Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Eoche-Bosy, D; Gautier, M; Esquibet, M; Legeai, F; Bretaudeau, A; Bouchez, O; Fournet, S; Grenier, E; Montarry, J

    2017-09-01

    Improving resistance durability involves to be able to predict the adaptation speed of pathogen populations. Identifying the genetic bases of pathogen adaptation to plant resistances is a useful step to better understand and anticipate this phenomenon. Globodera pallida is a major pest of potato crop for which a resistance QTL, GpaV vrn , has been identified in Solanum vernei. However, its durability is threatened as G. pallida populations are able to adapt to the resistance in few generations. The aim of this study was to investigate the genomic regions involved in the resistance breakdown by coupling experimental evolution and high-density genome scan. We performed a whole-genome resequencing of pools of individuals (Pool-Seq) belonging to G. pallida lineages derived from two independent populations having experimentally evolved on susceptible and resistant potato cultivars. About 1.6 million SNPs were used to perform the genome scan using a recent model testing for adaptive differentiation and association to population-specific covariables. We identified 275 outliers and 31 of them, which also showed a significant reduction in diversity in adapted lineages, were investigated for their genic environment. Some candidate genomic regions contained genes putatively encoding effectors and were enriched in SPRYSECs, known in cyst nematodes to be involved in pathogenicity and in (a)virulence. Validated candidate SNPs will provide a useful molecular tool to follow frequencies of virulence alleles in natural G. pallida populations and define efficient strategies of use of potato resistances maximizing their durability. © 2017 John Wiley & Sons Ltd.

  2. Using SNP markers to dissect linkage disequilibrium at a major quantitative trait locus for resistance to the potato cyst nematode Globodera pallida on potato chromosome V.

    Science.gov (United States)

    Achenbach, Ute; Paulo, Joao; Ilarionova, Evgenyia; Lübeck, Jens; Strahwald, Josef; Tacke, Eckhard; Hofferbert, Hans-Reinhard; Gebhardt, Christiane

    2009-02-01

    The damage caused by the parasitic root cyst nematode Globodera pallida is a major yield-limiting factor in potato cultivation . Breeding for resistance is facilitated by the PCR-based marker 'HC', which is diagnostic for an allele conferring high resistance against G. pallida pathotype Pa2/3 that has been introgressed from the wild potato species Solanum vernei into the Solanum tuberosum tetraploid breeding pool. The major quantitative trait locus (QTL) controlling this nematode resistance maps on potato chromosome V in a hot spot for resistance to various pathogens including nematodes and the oomycete Phytophthora infestans. An unstructured sample of 79 tetraploid, highly heterozygous varieties and breeding clones was selected based on presence (41 genotypes) or absence (38 genotypes) of the HC marker. Testing the clones for resistance to G. pallida confirmed the diagnostic power of the HC marker. The 79 individuals were genotyped for 100 single nucleotide polymorphisms (SNPs) at 10 loci distributed over 38 cM on chromosome V. Forty-five SNPs at six loci spanning 2 cM in the interval between markers GP21-GP179 were associated with resistance to G. pallida. Based on linkage disequilibrium (LD) between SNP markers, six LD groups comprising between 2 and 18 SNPs were identified. The LD groups indicated the existence of multiple alleles at a single resistance locus or at several, physically linked resistance loci. LD group C comprising 18 SNPs corresponded to the 'HC' marker. LD group E included 16 SNPs and showed an association peak, which positioned one nematode resistance locus physically close to the R1 gene family.

  3. Bulviniai cistiniai nematodai Globodera rostochiensis ir Globodera pallida, jų chemoekologinių sąveikų su augalu šeimininku tyrimas

    OpenAIRE

    Čepulytė-Rakauskienė, Rasa

    2012-01-01

    Potato cyst nematodes Globodera rostochiensis and Globodera pallida are one of the most important solanaceous plant pests. Identification of potato cyst nematodes species is exposed to morphological similarities and overlapping morphometric measurements between species. Only modern molecular techniques allow more accurate identification of potato cyst nematode species. Hence, it is important to apply these techniques in order to reliably identify these species in Lithuania. Potato roots...

  4. Development of diagnostic markers for use in breeding potatoes resistant to Globodera pallida pathotype Pa2/3 using germplasm derived from Solanum tuberosum ssp. andigena CPC 2802.

    Science.gov (United States)

    Moloney, Claire; Griffin, Denis; Jones, Peter W; Bryan, Glenn J; McLean, Karen; Bradshaw, John E; Milbourne, Dan

    2010-02-01

    Quantitative resistance to Globodera pallida pathotype Pa2/3, originally derived from Solanum tuberosum ssp. andigena Commonwealth Potato Collection (CPC) accession 2802, is present in several potato cultivars and advanced breeding lines. One genetic component of this resistance, a large effect quantitative trait locus (QTL) on linkage group IV (which we have renamed GpaIV(adg)(s)) has previously been mapped in the tetraploid breeding line 12601ab1. In this study, we show that GpaIV(adg)(s) is also present in a breeding line called C1992/31 via genetic mapping in an F(1) population produced by crossing C1992/31 with the G. pallida susceptible cultivar Record. C1992/31 is relatively divergent from 12601ab1, confirming that GpaIV(adg)(s) is an ideal target for marker-assisted selection in currently available germplasm. To generate markers exhibiting diagnostic potential for GpaIV(adg)(s), three bacterial artificial chromosome clones were isolated from the QTL region, sequenced, and used to develop 15 primer sets generating single-copy amplicons, which were examined for polymorphisms exhibiting linkage to GpaIV(adg)(s) in C1992/31. Eight such polymorphisms were found. Subsequently, one insertion/deletion polymorphism, three single nucleotide polymorphisms and a specific allele of the microsatellite marker STM3016 were shown to exhibit diagnostic potential for the QTL in a panel of 37 potato genotypes, 12 with and 25 without accession CPC2082 in their pedigrees. STM3016 and one of the SNP polymorphisms, C237(119), were assayed in 178 potato genotypes, arising from crosses between C1992/31 and 16 G. pallida susceptible genotypes, undergoing selection in a commercial breeding programme. The results suggest that the diagnostic markers would most effectively be employed in MAS-based approaches to pyramid different resistance loci to develop cultivars exhibiting strong, durable resistance to G. pallida pathotype Pa2/3.

  5. Lipopolysaccharides of Rhizobium etli strain G12 act in potato roots as an inducing agent of systemic resistance to infection by the cyst nematode Globodera pallida.

    Science.gov (United States)

    Reitz, M; Rudolph, K; Schröder, I; Hoffmann-Hergarten, S; Hallmann, J; Sikora, R A

    2000-08-01

    Recent studies have shown that living and heat-killed cells of the rhizobacterium Rhizobium etli strain G12 induce in potato roots systemic resistance to infection by the potato cyst nematode Globodera pallida. To better understand the mechanisms of induced resistance, we focused on identifying the inducing agent. Since heat-stable bacterial surface carbohydrates such as exopolysaccharides (EPS) and lipopolysaccharides (LPS) are essential for recognition in the symbiotic interaction between Rhizobium and legumes, their role in the R. etli-potato interaction was studied. EPS and LPS were extracted from bacterial cultures, applied to potato roots, and tested for activity as an inducer of plant resistance to the plant-parasitic nematode. Whereas EPS did not affect G. pallida infection, LPS reduced nematode infection significantly in concentrations as low as 1 and 0.1 mg ml(-1). Split-root experiments, guaranteeing a spatial separation of inducing agent and challenging pathogen, showed that soil treatments of one half of the root system with LPS resulted in a highly significant (up to 37%) systemic induced reduction of G. pallida infection of potato roots in the other half. The results clearly showed that LPS of R. etli G12 act as the inducing agent of systemic resistance in potato roots.

  6. Pollen mother cells of Tradescantia clone 4430 and Tradescantia pallida var. purpurea are equally sensitive to the clastogenic effects of X-rays

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    Suyama F.

    2002-01-01

    Full Text Available The Tradescantia micronucleus test is a sensitive bioassay for mutagenesis that may be employed both under field and laboratory conditions. This test has been standardized mostly on the basis of the results obtained with clone 4430. However, this clone is not well adapted to tropical weather, frequently showing problems with growth and flowering. In addition, it is attacked by parasites and insects, a fact that limits its use in field studies aiming at the biomonitoring of air pollution. In the city of São Paulo, Tradescantia pallida (Rose Hunt. var. purpurea Boom is widely distributed as an ornamental plant in gardens and along roadsides and streets, mostly because of its natural resistance and its easy propagation. In this report, we present dose-response curves indicating that the sensitivity of T. pallida and clone 4430 to X-radiation (1, 10, 25 and 50 cGy is similar. The results confirm our previous suggestion that T. pallida represents a good alternative for in situ mutagenesis testing in tropical regions, especially biomonitoring studies in which the exposure conditions may not be fully controllable.

  7. Traça Tuta absoluta (Meyrick em cultivares de tomateiro tratadas com extratos aquosos de Trichilia pallida Swartz Tuta absoluta (Meyrick on tomato cultivars treated with aqueous extracts of Trichilia pallida Swartz

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    José Djair Vendramim

    2001-09-01

    Full Text Available A traça Tuta absoluta (Meyrick é atualmente uma das principais pragas do tomateiro no Brasil. Com o objetivo de obter um método de controle eficiente e não poluente, avaliou-se a atividade dos extratos aquosos de folhas e ramos de Trichilia pallida Swartz associados a duas cultivares de tomateiro (Santa Clara e IPA-5 sobre essa praga. Acompanhou-se o desenvolvimento do inseto em folhas de cada uma das cultivares previamente submersas nos extratos a 1% de concentração, avaliando-se a duração e viabilidade das fases larval e pupal e o peso de pupas. A cultivar IPA-5 provocou alongamento da fase larval e, quando associada aos extratos de folhas e de ramos, reduziu a viabilidade pupal do inseto. Os extratos de folhas e de ramos também alongaram o período larval de T. absoluta, na cultivar Santa Clara. O extrato de folhas foi mais prejudicial ao desenvolvimento da traça do que o extrato de ramos dessa planta, reduzindo a viabilidade larval em ambas as cultivares.The tomato pinworm Tuta absoluta (Meyrick is one of the main tomato pests in Brazil. With the objective of obtaining an efficient and not pollutant method of control, the activity of aqueous extracts of Trichilia pallida Swartz leaves and twigs on this pest was studied associated to the tomato cultivars Santa Clara and IPA-5. The development of the insect was observed on leaves of each cultivar, previously treated with extracts at 1% of concentration. Length and viability of larval and pupal stages and pupal weight were evaluated. The larval period of the insect was more prolonged on 'IPA-5' and, when associated with leaf and twig extracts, reduced pupal viability. Leaf and twig extracts also prolonged the larval stage in 'Santa Clara'. The leaf extract affected more negatively the insect development than the twig extract, reducing larval viability on both cultivars.

  8. The role of complement in cnidarian-dinoflagellate symbiosis and immune challenge in the sea anemone Aiptasia pallida

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    Angela ePoole

    2016-04-01

    Full Text Available The complement system is an innate immune pathway that in vertebrates, is responsible for initial recognition and ultimately phagocytosis and destruction of microbes. Several complement molecules including C3, Factor B, and mannose binding lectin associated serine proteases (MASP have been characterized in invertebrates and while most studies have focused on their conserved role in defense against pathogens, little is known about their role in managing beneficial microbes. The purpose of this study was to (1 characterize complement pathway genes in the symbiotic sea anemone A. pallida, (2 investigate the evolution of complement genes in invertebrates, and (3 examine the potential dual role of complement genes Factor B and MASP in the onset and maintenance of cnidarian-dinoflagellate symbiosis and immune challenge using qPCR based studies. The results demonstrate that A. pallida has multiple Factor B genes (Ap_Bf-1, Ap_Bf-2a, and Ap_Bf-2b and one MASP gene (Ap_MASP. Phylogenetic analysis indicates that the evolutionary history of complement genes is complex, and there have been many gene duplications or gene loss events, even within members of the same phylum. Gene expression analyses revealed a potential role for complement in both onset and maintenance of cnidarian-dinoflagellate symbiosis and immune challenge. Specifically, Ap_Bf-1 and Ap_MASP are significantly upregulated in the light at the onset of symbiosis and in response to challenge with the pathogen Serratia marcescens suggesting that they play a role in the initial recognition of both beneficial and harmful microbes. Ap_Bf-2b in contrast was generally downregulated during the onset and maintenance of symbiosis and in response to challenge with S. marcescens. Therefore the exact role of Ap_Bf-2b in response to microbes remains unclear, but the results suggests that the presence of microbes leads to repressed expression. Together these results indicate functional divergence between Ap

  9. Bioactivity of Trichilia pallida Swartz (Meliaceae) derived molecules on Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae); Bioatividade de moleculas isoladas de Trichilia pallida Swartz (Meliaceae) sobre Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae)

    Energy Technology Data Exchange (ETDEWEB)

    Cunha, Uemerson S. da [Universidade Federal de Pelotas (UFPel), RS (Brazil). Dept. de Fitossanidade]. E-mail: uscunha@ufpel.edu.br; Vendramim, Jose D. [Escola Superior de Agricultura Luiz de Queiroz (ESALQ-USP), Piracicaba, SP (Brazil). Dept. de Entomologia, Fitopatologia e Zoologia Agricola; Rocha, Waldireny C.; Vieira, Paulo C. [Universidade de Sao Carlos (UFSCar), SP (Brazil). Dept. de Quimica

    2008-11-15

    Dichloromethane (DIC) leaf and fruit extracts of Trichiliapallida Swartz were obtained for the isolation and identification of molecules with insecticide activity against the tomato leafminer, Tuta absoluta (Meyrick). DIC leaf extracts of T. pallida yielded six compounds, the triterpenes 24-methylenecycloarta-3{beta}-ol (TRIT-1), 24-methylenecycloarta-3{beta}-26-diol (TRIT-2) and cycloarta-23-eno-3{beta},25-diol (TRIT-3), the sterols 24-methylene-3,22-dihydroxycholesterol (EST-1), 24-methylenecholesterol (EST-2) and 24-methylene-3{beta},4{beta},22-trihydroxycholesterol (EST-3), while the fruit extract yielded the limonoid gedunine (LIM). These molecules were dissolved in acetone and sprayed at 0.1% on tomato leaflets infested with newly-hatched larvae. Larval mortality at day 5 and 9 after infestation, larval and pupal developmental time and survival, pupal weight and adult malformation were evaluated. TRIT-1, EST-1 and LIM were the most effective against T. absoluta due to larval development arrestment and reduced larval survivorship. (author)

  10. Paternal leakage of mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Hoolahan, Angelique H; Blok, Vivian C; Gibson, Tracey; Dowton, Mark

    2011-12-01

    Animal mtDNA is typically assumed to be maternally inherited. Paternal mtDNA has been shown to be excluded from entering the egg or eliminated post-fertilization in several animals. However, in the contact zones of hybridizing species and populations, the reproductive barriers between hybridizing organisms may not be as efficient at preventing paternal mtDNA inheritance, resulting in paternal leakage. We assessed paternal mtDNA leakage in experimental crosses of populations of a cyst-forming nematode, Globodera pallida. A UK population, Lindley, was crossed with two South American populations, P5A and P4A. Hybridization of these populations was supported by evidence of nuclear DNA from both the maternal and paternal populations in the progeny. To assess paternal mtDNA leakage, a ~3.4 kb non-coding mtDNA region was analyzed in the parental populations and in the progeny. Paternal mtDNA was evident in the progeny of both crosses involving populations P5A and P4A. Further, paternal mtDNA replaced the maternal mtDNA in 22 and 40 % of the hybrid cysts from these crosses, respectively. These results indicate that under appropriate conditions, paternal leakage occurs in the mtDNA of parasitic nematodes, and supports the hypothesis that hybrid zones facilitate paternal leakage. Thus, assumptions of strictly maternal mtDNA inheritance may be frequently violated, particularly when divergent populations interbreed.

  11. Extrato aquoso de ramos de Trichilia pallida e o desenvolvimento de Spodoptera frugiperda em genótipos de milho

    Directory of Open Access Journals (Sweden)

    Torrecillas Sônia Martins

    2001-01-01

    Full Text Available Avaliaram-se o desenvolvimento e a sobrevivência da lagarta-do-cartucho, Spodoptera frugiperda (J. E. Smith criada em folhas de dois genótipos de milho (o padrão comercial C 901 e o resistente CMS 23 tratados com extratos aquosos (0,1 e 1% de ramos da planta inseticida Trichilia pallida Swartz (Meliaceae. As variáveis biológicas avaliadas foram peso, duração e viabilidade das fases larval e pupal. Em plantas tratadas com o extrato a 1%, ocorreu mortalidade total das lagartas nos dois genótipos, enquanto que a 0,1% o extrato reduziu a sobrevivência e o peso larval e prolongou o período de desenvolvimento. Lagartas alimentadas com o genótipo CMS 23 apresentaram menor sobrevivência, menor peso e maior período de desenvolvimento do que no genótipo C 901.

  12. Coherent anti-Stokes Raman scattering (CARS) spectroscopy in Caenorhabditis elegans and Globodera pallida: evidence for an ivermectin-activated decrease in lipid stores.

    Science.gov (United States)

    Smus, Justyna P; Ludlow, Elizabeth; Dallière, Nicolas; Luedtke, Sarah; Monfort, Tual; Lilley, Catherine; Urwin, Peter; Walker, Robert J; O'Connor, Vincent; Holden-Dye, Lindy; Mahajan, Sumeet

    2017-12-01

    Macrocyclic lactones are arguably the most successful chemical class with efficacy against parasitic nematodes. Here we investigated the effect of the macrocyclic lactone ivermectin on lipid homeostasis in the plant parasitic nematode Globodera pallida and provide new insight into its mode of action. A non-invasive, non-destructive, label-free and chemically selective technique called Coherent anti-Stokes Raman scattering (CARS) spectroscopy was used to study lipid stores in G. pallida. We optimised the protocol using the free-living nematode Caenorhabditis elegans and then used CARS to quantify lipid stores in the pre-parasitic, non-feeding J2 stage of G. pallida. This revealed a concentration of lipid stores in the posterior region of J2 s within 24 h of hatching which decreased to undetectable levels over the course of 28 days. We tested the effect of ivermectin on J2 viability and lipid stores. Within 24 h, ivermectin paralysed J2 s. Counterintuitively, over the same time-course ivermectin increased the rate of depletion of J2 lipid, suggesting that in ivermectin-treated J2 s there is a disconnection between the energy requirements for motility and metabolic rate. This decrease in lipid stores would be predicted to negatively impact on J2 infective potential. These data suggest that the benefit of macrocyclic lactones as seed treatments may be underpinned by a multilevel effect involving both neuromuscular inhibition and acceleration of lipid metabolism. © 2017 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. © 2017 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

  13. Pasteuria endospores from Heterodera cajani (Nematoda: Heteroderidae) exhibit inverted attachment and altered germination in cross-infection studies with Globodera pallida (Nematoda: Heteroderidae).

    Science.gov (United States)

    Mohan, Sharad; Mauchline, Tim H; Rowe, Janet; Hirsch, Penny R; Davies, Keith G

    2012-03-01

    The Pasteuria group of Gram-positive, endospore-forming bacteria are parasites of invertebrates and exhibit differences in host specificity. We describe a cross-infection study between an isolate of Pasteuria from pigeon pea cyst nematode, Heterodera cajani, which also infects the potato cyst nematode, Globodera pallida, from the United Kingdom. A proportion of the attached endospores, 13% on H. cajani and 22% on G. pallida adhere to the cuticle in an inverted orientation. Inverted and conventionally attached endospores germinated and produced bacillus-like rods that completed their life cycle in Pasteuria population was systematically followed in two different nematode genera. A 1430-base pair fragment of the 16S rRNA gene sequence of the Pasteuria isolate from H. cajani revealed 98.6% similarity to the orthologous gene in Pasteuria nishizawae. Additionally, their respective endospore sizes were not significantly different, in contrast their host ranges are. Potential reasons for this remain unclear and are discussed. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  14. Terminalia pallida fruit ethanolic extract ameliorates lipids, lipoproteins, lipid metabolism marker enzymes and paraoxonase in isoproterenol-induced myocardial infarcted rats

    Directory of Open Access Journals (Sweden)

    Althaf Hussain Shaik

    2018-03-01

    Full Text Available The present study aimed to evaluate the effect of Terminalia pallida fruit ethanolic extract (TpFE on lipids, lipoproteins, lipid metabolism marker enzymes and paraoxonase (PON in isoproterenol (ISO-induced myocardial infarcted rats. PON is an excellent serum antioxidant enzyme which involves in the protection of low density lipoprotein cholesterol (LDL-C from the process of oxidation for the prevention of cardiovascular diseases. ISO caused a significant increase in the concentration of total cholesterol, triglycerides, LDL-C, very low density lipoprotein cholesterol and lipid peroxidation whereas significant decrease in the concentration of high density lipoprotein cholesterol. ISO administration also significantly decreased the activities of lecithin cholesterol acyl transferase, PON and lipoprotein lipase whereas significantly increased the activity of 3-hydroxy-3-methylglutaryl-coenzyme-A reductase. Oral pretreatment of TpFE at doses 100, 300 and 500 mg/kg body weight (bw and gallic acid (15 mg/kg bw for 30 days challenged with concurrent injection of ISO (85 mg/kg bw on 29th and 30th day significantly attenuated these alterations and restored the levels of lipids, lipoproteins and the activities of lipid metabolizing enzymes. Also TpFE significantly elevated the serum antioxidant enzyme PON. This is the first report revealed that pretreatment with TPFE ameliorated lipid metabolic marker enzymes and increased the antioxidant PON in ISO treated male albino Wistar rats. Keywords: Terminalia pallida fruit, Gallic acid, Isoproterenol, Lipid metabolism marker enzymes, Paraoxonase, Myocardial infarction

  15. Unravelling the role of zooxanthellae in the uptake and depuration of an essential metal in Exaiptasia pallida; an experiment using a model cnidarian

    International Nuclear Information System (INIS)

    Hardefeldt, Jannah M.; Reichelt-Brushett, Amanda J.

    2015-01-01

    Highlights: • We examined zooxanthellae and tissue zinc partitioning in Exaiptasia pallida. • Zooxanthellae density has a strong influence on whole organism metal loading. • Zooxanthellae loss through stress is likely to result in metal depuration. • There are implications for interpreting studies of metal loads in symbiotic organisms. • Studies of metal loads in symbiotic organisms must consider zooxanthellae density. - Abstract: Coral skeletons record historical trace metal levels in the environment, however, the use of coral skeletal records for biomonitoring studies mostly fail to consider the influence of metal regulation by the living components of coral and subsequent incorporation into the skeleton. This study presents Exaiptasia pallida as a representative of the living components of coral and shows metal partitioning between the tissue and zooxanthellae after chronic exposure to Zn. A strong tendency for preferential accumulation in the zooxanthellae occurred after 32 days exposure and Zn concentrations in tissue and zooxanthellae were 123.3 ± 0.7 mg kg −1 and 294.9 ± 8.5 respectively. This study shows zooxanthellae density plays an important role in controlling Zn loading in whole anemones and must be considered when investigating metal uptake and loading in zooxanthellate organisms. Further studies that investigate links between aragonite deposition rates and zooxanthellae density and incorporation pathways of metals into skeleton are warranted

  16. Quantitative detection of the potato cyst nematode, Globodera pallida, and the beet cyst nematode, Heterodera schachtii, using Real-Time PCR with SYBR green I dye.

    Science.gov (United States)

    Madani, Mehrdad; Subbotin, Sergei A; Moens, Maurice

    2005-04-01

    The potato cyst nematode Globodera pallida and the beet cyst nematode Heterodera schachtii are major nematode pests in world agriculture. Precise identification and knowledge about the number of nematodes in field soil are necessary to develop effective integrated pest control. Here we report the results of the Real-Time PCR assay for the rapid detection and quantification of G. pallida and H. schachtii. Using species specific primers and SYBR green I dye, we were able to detect a single second stage juvenile of cyst forming nematodes in samples. The specificity of the reaction was confirmed by the lack of amplification of DNAs from other Heterodera or Globodera species. Validation tests showed a rather high correlation between real numbers of second stage juveniles in a sample and expected numbers detected by Real-Time PCR. Reasons for observed differences in sensitivity and reliability of quantification detection for two species as well as other problems of Real-Time PCR are discussed. The Real-Time PCR assay with SYBR green I dye targeting fragments of the ITS-rDNA provided a sensitive means for the rapid and simultaneous detection and quantification of juveniles of these pests.

  17. Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate.

    Science.gov (United States)

    Palomares-Rius, Juan Emilio; Hedley, Pete; Cock, Peter J A; Morris, Jenny A; Jones, John T; Blok, Vivian C

    2016-01-01

    Plant-parasitic nematodes (PPN) need to be adapted to survive in the absence of a suitable host or in hostile environmental conditions. Various forms of developmental arrest including hatching inhibition and dauer stages are used by PPN in order to survive these conditions and spread to other areas. Potato cyst nematodes (PCN) (Globodera pallida and G. rostochiensis) are frequently in an anhydrobiotic state, with unhatched nematode persisting for extended periods of time inside the cyst in the absence of the host. This paper shows fundamental changes in the response of quiescent and diapaused eggs of G. pallida to hydration and following exposure to tomato root diffusate (RD) using microarray gene expression analysis encompassing a broad set of genes. For the quiescent eggs, 547 genes showed differential expression following hydration vs. hydratation and RD (H-RD) treatment whereas 708 genes showed differential regulation for the diapaused eggs following these treatments. The comparison between hydrated quiescent and diapaused eggs showed marked differences, with 2,380 genes that were differentially regulated compared with 987 genes following H-RD. Hydrated quiescent and diapaused eggs were markedly different indicating differences in adaptation for long-term survival. Transport activity is highly up-regulated following H-RD and few genes were coincident between both kinds of eggs. With the quiescent eggs, the majority of genes were related to ion transport (mainly sodium), while the diapaused eggs showed a major diversity of transporters (amino acid transport, ion transport, acetylcholine or other molecules).

  18. Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate

    Directory of Open Access Journals (Sweden)

    Juan Emilio Palomares-Rius

    2016-02-01

    Full Text Available Plant-parasitic nematodes (PPN need to be adapted to survive in the absence of a suitable host or in hostile environmental conditions. Various forms of developmental arrest including hatching inhibition and dauer stages are used by PPN in order to survive these conditions and spread to other areas. Potato cyst nematodes (PCN (Globodera pallida and G. rostochiensis are frequently in an anhydrobiotic state, with unhatched nematode persisting for extended periods of time inside the cyst in the absence of the host. This paper shows fundamental changes in the response of quiescent and diapaused eggs of G. pallida to hydration and following exposure to tomato root diffusate (RD using microarray gene expression analysis encompassing a broad set of genes. For the quiescent eggs, 547 genes showed differential expression following hydration vs. hydratation and RD (H-RD treatment whereas 708 genes showed differential regulation for the diapaused eggs following these treatments. The comparison between hydrated quiescent and diapaused eggs showed marked differences, with 2,380 genes that were differentially regulated compared with 987 genes following H-RD. Hydrated quiescent and diapaused eggs were markedly different indicating differences in adaptation for long-term survival. Transport activity is highly up-regulated following H-RD and few genes were coincident between both kinds of eggs. With the quiescent eggs, the majority of genes were related to ion transport (mainly sodium, while the diapaused eggs showed a major diversity of transporters (amino acid transport, ion transport, acetylcholine or other molecules.

  19. Morphological and karyological relationship within Alpine-Dinaric populations of the genus Iris L., Pallidae series (A. Kern. Trinajstić (Iridaceae

    Directory of Open Access Journals (Sweden)

    Bożena Mitić

    2014-01-01

    Full Text Available The relationships within the Alpine-Dinaric and cultivated populations of the genus Iris, Pallidae series, have been analysed by methods of multivariate statistics (Cluster, PCA and MST analyses. The bases for multivariate analyses were seven morphological characteristics (stem length, length of largest leaf, greatest width of the largest leaf, length of smallest leaf, greatest width of the smallest leaf, the number of leaves and the number of flowers and relative chromosome length for 12 chromosome pairs. In spite of two similar looking isolated populations (Stara Baška and Konavle, the presence of four groups within the series was established, to which a species status can be ascribed: I. pallida Lam. separated as a horticultural species, /. cengialti Ambr. - endemic in Alpine region, /. illyrica Tomm. - endemic to the northern Adriatic Littoral and I. pseudopallida Trinajstić - endemic to the southern Adriatic Littoral. To differentiate the established groups, in PCA analysis the most significant features turned out to be: relative chromosome length of eleventh and tenth chromosome pairs, the length of the smallest leaf, relative chromosome length of the seventh chromosome pair and length of the stem.

  20. Scientific Opinion on the risks to plant health posed by European versus non-European populations of the potato cyst nematodes Globodera pallida and Globodera rostochiensis

    DEFF Research Database (Denmark)

    Baker, R.; Candresse, T.; Dormannsné Simon, E.

    2012-01-01

    The Panel on Plant Health has delivered a scientific opinion on the different risks posed by European and non-European populations of the potato cyst nematodes (PCN) Globodera pallida and Globodera rostochiensis to solanaceous plants in the EU and on the effectiveness of current control measures...... to place of production freedom and soil origin were noted, and the Panel identified additional risk reduction options for certain plants for planting (e.g. bulbs) and additional requirements to confirm the absence of PCN in places of production. The Panel also identified some problems with the existing...... control measures to reduce the spread of PCN within the EU. A thorough and well-coordinated EU-wide survey using standardized methods would be necessary to evaluate the need to maintain these measures. The monitoring of PCN populations should exploit new diagnostic techniques (e.g. mitochondrial DNA...

  1. Toxicity estimates for diuron and atrazine for the tropical marine cnidarian Exaiptasia pallida and in-hospite Symbiodinium spp. using PAM chlorophyll-a fluorometry.

    Science.gov (United States)

    Howe, Pelli Louise; Reichelt-Brushett, Amanda Jean; Clark, Malcolm William; Seery, Cliff Ross

    2017-06-01

    Effective ecotoxicological risk assessments for herbicides in tropical marine environments are restricted by a lack of toxicity data, sensitive test methods and endpoints for relevant species, and this requires rectification. The symbiotic sea anemone Exaiptasia pallida is a suitable test species, representing the phylum Cnidaria and allowing for assessments of toxicological responses of both the animal host and in-hospite Symbiodinium spp. Pulse amplitude modulated (PAM) chlorophyll-a fluorometry is recognised as a valuable ecotoxicological tool, and here newly-developed test methods are presented using PAM fluorometry to measure herbicide effects on photosynthetic efficiency of in-hospite Symbiodinium spp. Additionally, measurements on healthy laboratory-reared E. pallida provide baseline data demonstrating the normal effective quantum yield (EQY) and the maximum electron transport rate (ETR m ) for Symbiodinium spp. in the absence of herbicide stress. Concentration-dependant reductions in the EQY and ETR m occurred during diuron and atrazine exposures; a mean 48-h EC50 (effective concentration; 50%) of 8μg/L of diuron was estimated, however atrazine elicited a much lower toxicity. Twelve-day exposures to 10-200μg/L diuron showed that the greatest EQY effect occurred during the first 48h, with little subsequent change. However, longer exposures to the lowest diuron treatment (1μg/L) showed the lowest EQYs after 96h followed by recovery to control levels within 12d. Furthermore, asexual reproduction was inhibited during 12-d exposures to diuron, and 12-d EC50 values of 100 and 132μg/L were estimated to inhibit successful reproduction of pedal lacerates and juveniles by 50% respectively. This study provides much needed data contributions to species sensitivity curves for development of diuron and atrazine water quality guidelines in tropical marine environments. Copyright © 2017 Elsevier B.V. All rights reserved.

  2. Genotoxicity on Tradescantia pallida var. purpurea plants exposed to urban and rural environments in the metropolitan area of Porto Alegre, southern Brazil

    Directory of Open Access Journals (Sweden)

    GM. Costa

    Full Text Available The Trad-MCN bioassay was used to investigate the genotoxicity on Tradescantia pallida var. purpurea plants exposed to variations in the environmental conditions in urban and rural sites in the metropolitan area of Porto Alegre, southern Brazil, over a one-year period. In spring 2009 and in summer, autumn and winter 2010, potted plants of T. pallida var. purpurea were exposed at two sites with different characteristics: the urban area of the municipality of Estância Velha, with leather and footwear industrial activity, and a Site of Special Environmental Interest in the rural area of the municipality of Novo Hamburgo. Other plants comprised the control group and were kept indoors. Frequencies of micronuclei (MCN were determined in early tetrads of pollen mother cells and expressed as MCN/100 tetrads. Climate data were also registered during the experiment. MCN frequencies in the urban area were significantly higher (up to 8.13 than those found in the rural area (up to 1.26 and in the control group (up to 1.10, which did not differ statistically from each other over the year. The higher MCN frequencies observed in the urban site can be attributed to air pollution, but also may have been influenced by microclimatic and daily thermal variation differences between sites. Higher temperatures recorded in spring and summer may have influenced MCN frequencies observed in the urban site. No clear relation was observed between rainfall and MCN frequencies. Similar and high relative humidity percentages were registered over the period of the study. Considering that the bioindicator plant presents an integrated response to abiotic factors such as pollutants and weather conditions, it can be used as an additional tool that can point to synergistic effects of environmental variables on organisms.

  3. A high-resolution map of the Grp1 locus on chromosome V of potato harbouring broad-spectrum resistance to the cyst nematode species Globodera pallida and Globodera rostochiensis.

    Science.gov (United States)

    Finkers-Tomczak, Anna; Danan, Sarah; van Dijk, Thijs; Beyene, Amelework; Bouwman, Liesbeth; Overmars, Hein; van Eck, Herman; Goverse, Aska; Bakker, Jaap; Bakker, Erin

    2009-06-01

    The Grp1 locus confers broad-spectrum resistance to the potato cyst nematode species Globodera pallida and Globodera rostochiensis and is located in the GP21-GP179 interval on the short arm of chromosome V of potato. A high-resolution map has been developed using the diploid mapping population RHAM026, comprising 1,536 genotypes. The flanking markers GP21 and GP179 have been used to screen the 1,536 genotypes for recombination events. Interval mapping of the resistances to G. pallida Pa2 and G. rostochiensis Ro5 resulted in two nearly identical LOD graphs with the highest LOD score just north of marker TG432. Detailed analysis of the 44 recombinant genotypes showed that G. pallida and G. rostochiensis resistance could not be separated and map to the same location between marker SPUD838 and TG432. It is suggested that the quantitative resistance to both nematode species at the Grp1 locus is mediated by one or more tightly linked R genes that might belong to the NBS-LRR class.

  4. Desenvolvimento de Spodoptera frugiperda (J. E. Smith em genótipos de milho tratados com extrato acetato de etila de Trichilia pallida (Swartz Development of Spodoptera frugiperda (J. E. Smith on corn genotypes treated with ethyl acetade extract from Trichilia pallida (Swartz

    Directory of Open Access Journals (Sweden)

    Antonia Railda Roel

    1999-07-01

    Full Text Available Avaliou-se o efeito do extrato acetato de etila obtido de folhas e ramos de Trichillia pallida, (a 0,001%, sobre o desenvolvimento de Spodoptera frugiperda alimentada com folhas de quatro genótipos de milho, um suscetível, 'Piranão', e três resistentes, 'CMS 14C', 'Zapalote Chico', 'ESALQ-PB-4', à referida praga. Os parâmetros biológicos avaliados foram peso, duração e viabilidade das fases larval e pupal. Verificou-se que o extrato provocou alongamento da fase larval e redução dos pesos larval e pupal e que os genótipos resistentes não confirmaram esse comportamento pois quando comparados ao genótipo suscetível, apenas reduziram o peso pupal. Não houve interação significativa entre os fatores genótipo e extrato.The effect of the ethyl acetate extract of leaves and branches of Trichilia pallida was evaluated (at 0.001% on larvae of S. frugiperda, fed on leaves of the corn genotypes 'Zapalote Chico', 'CMS 14C' and 'ESALQ-PB-4', considered resistant to this pest, and the susceptible genotype 'Piranão'. The parameters evaluated were length, weight and viability of larval and pupal stages. The extract increased the length of the larval stage, and larval and pupal weight, while resistant genotypes only reduced the pupal weight, did however not confirm the resistant behaviour. There was no interaction between genotype and extract.

  5. Unravelling the role of zooxanthellae in the uptake and depuration of an essential metal in Exaiptasia pallida; an experiment using a model cnidarian.

    Science.gov (United States)

    Hardefeldt, Jannah M; Reichelt-Brushett, Amanda J

    2015-07-15

    Coral skeletons record historical trace metal levels in the environment, however, the use of coral skeletal records for biomonitoring studies mostly fail to consider the influence of metal regulation by the living components of coral and subsequent incorporation into the skeleton. This study presents Exaiptasia pallida as a representative of the living components of coral and shows metal partitioning between the tissue and zooxanthellae after chronic exposure to Zn. A strong tendency for preferential accumulation in the zooxanthellae occurred after 32 days exposure and Zn concentrations in tissue and zooxanthellae were 123.3±0.7 mg kg(-1) and 294.9±8.5 respectively. This study shows zooxanthellae density plays an important role in controlling Zn loading in whole anemones and must be considered when investigating metal uptake and loading in zooxanthellate organisms. Further studies that investigate links between aragonite deposition rates and zooxanthellae density and incorporation pathways of metals into skeleton are warranted. Copyright © 2015 Elsevier Ltd. All rights reserved.

  6. Origin and genetic diversity of Western European populations of the potato cyst nematode (Globodera pallida) inferred from mitochondrial sequences and microsatellite loci.

    Science.gov (United States)

    Plantard, O; Picard, D; Valette, S; Scurrah, M; Grenier, E; Mugniéry, D

    2008-05-01

    Native to South America, the potato cyst nematode Globodera pallida is one of the principal pests of Andean potato crops and is also an important global pest following its introduction to Europe, Africa, North America, Asia and Oceania. Building on earlier work showing a clear south to north phylogeographic pattern in Peruvian populations, we have been able to identify the origin of Western European populations with high accuracy. They are all derived from a single restricted area in the extreme south of Peru, located between the north shore of the Lake Titicaca and Cusco. Only four cytochrome b haplotypes are found in Western Europe, one of them being also found in some populations of this area of southern Peru. The allelic richness at seven microsatellite loci observed in the Western European populations, although only one-third of that observed in this part of southern Peru, is comparable to the allelic richness observed in the northern region of Peru. This result could be explained by the fact that most of the genetic variability observed at the scale of a field or even of a region is already observed at the scale of a single plant within a field. Thus, even introduction via a single infected potato plant could result in the relatively high genetic variability observed in Western Europe. This finding has important consequences for the control of this pest and the development of quarantine measures.

  7. Biofumigation with Brassica juncea, Raphanus sativus and Eruca sativa for the management of field populations of the potato cyst nematode Globodera pallida.

    Science.gov (United States)

    Ngala, Bruno M; Haydock, Patrick P J; Woods, Simon; Back, Matthew A

    2015-05-01

    The viability of potato cyst nematode (PCN) populations (Globodera pallida) was evaluated in three field experiments using Brassica juncea, Raphanus sativus and Eruca sativa amendments. These species were summer cultivated and autumn incorporated in experiment 1; in experiment 2, overwintered brassicaceous cover crops were spring incorporated. Experiment 3 involved determination of effects of metconazole application on biomass/glucosinolate production by B. juncea and R. sativus and on PCN pre- and post-incorporation. Glucosinolate contents were determined before incorporation. Following cover crop incorporation, field plots were planted with susceptible potatoes to evaluate the biofumigation effects on PCN reproduction. In experiment 1, PCN population post-potato harvest was reduced (P = 0.03) in B. juncea-treated plots, while R. sativus prevented further multiplication, but in experiment 2 there were no significant effects on PCN reproduction. In experiment 3, B. juncea or R. sativus either untreated or treated with metconazole reduced PCN populations. Glucosinolate concentrations varied significantly between different plant regions and cultivation seasons. Metconazole application increased the sinigrin concentration in B. juncea tissues. Glucosinolate concentrations correlated positively with PCN mortality for summer-cultivated brassicaceous plants. The results demonstrated that B. juncea and R. sativus green manures can play an important role in PCN management, particularly if included in an integrated pest management scheme. © 2014 Society of Chemical Industry.

  8. Efeito do extrato acetato de etila de Trichilia pallida Swartz (Meliaceae no desenvolvimento e sobrevivência da lagarta-do-cartucho

    Directory of Open Access Journals (Sweden)

    ROEL ANTONIA RAILDA

    2000-01-01

    Full Text Available O efeito de diferentes concentrações (massa/volume do extrato acetato de etila de folhas e ramos de Trichilia pallida, em relação à lagarta-do-cartucho Spodoptera frugiperda (J.E. Smith, foi avaliado em condições de laboratório. As folhas de milho foram imersas em diferentes concentrações (0,0001%; 0,0008%; 0,006%; 0,05%; 0,4% e 3% desse extrato e oferecidas a lagartas recém-eclodidas e com dez dias de idade, avaliando-se a duração e viabilidade das fases larval e pupal e a massa de pupas. A concentração letal 50 (CL50 estimada para lagartas com sete dias de idade foi de 0,048%. Verificou-se que o extrato causou mortalidade larval de 100% (em concentração igual ou superior a 0,05%, afetou a sobrevivência e o desenvolvimento do inseto (na concentração de 0,006% e não provocou qualquer efeito no mesmo, em concentração igual ou inferior a 0,0008%. Lagartas alimentadas desde a eclosão foram mais afetadas do que as alimentadas a partir dos dez dias.

  9. Trace Element Determination and Cardioprotection of Terminalia pallida Fruit Ethanolic Extract in Isoproterenol Induced Myocardial Infarcted Rats by ICP-MS.

    Science.gov (United States)

    Althaf Hussain, Shaik; Kareem, Mohammed Abdul; Rasool, Shaik Nayab; Al Omar, Suliman Yousef; Saleh, Alwasel; Al-Fwuaires, Manal Abdulrahman; Daddam, Jayasimha Rayalu; Devi, Kodidhela Lakshmi

    2018-01-01

    The trace elements and minerals in Terminalia pallida fruit ethanolic extract (TpFE) were determined by the instrument inductively coupled plasma-mass spectrometry (ICP-MS), and the cardioprotection of TpFE against isoproterenol (ISO)-administered rats was studied. Rats were pretreated with TpFE (100, 300, and 500 mg/kg bw) for 30 days, with concurrent administration of ISO (85 mg/kg bw) for two consecutive days. The levels of trace elements and minerals in TpFE were below the permitted limits of World Health Organization standards. ISO administration significantly increased the heart weight and cardiac marker enzymes in serum, xanthine oxidase, sodium, and calcium in the heart, whereas significantly decreased body weight, reduced glutathione, glutathione-S-transferase, superoxide dismutase, and potassium in the heart. Oral pretreatment of TpFE significantly prevented the ISO-induced alterations. This is the first report that revealed the determination of trace elements and mineral nutrients of TpFE by ICP-MS which plays a principal role in the herbal drug discovery for the treatment of cardiovascular diseases.

  10. Aboveground biomass in Prosopis pallida (Humb. and Bonpl. ex Willd. H. B. K. ecosystems using Landsat 7 ETM+ images Biomasa aérea en ecosistemas de Prosopis pallida (Humb. and Bonpl. ex Willd. H. B. K. usando imágenes Landsat 7 ETM+

    Directory of Open Access Journals (Sweden)

    EVA PADRÓN

    2007-03-01

    Full Text Available The significance of field work in remote sensing studies when applied to large areas has often been underestimated. The combination of specific forest inventories for the estimation of aboveground biomass in large dry tropical forest areas with remote sensor data has scarcely been explored to date. In this work, a systematic, stratified forest inventory involving 100 X 100 m square plots in an area of Peruvian Prosopis pallida dry forest, roughly one million hectares in size in the Piura province (Peru has been compiled. The inventory encompassed the principal silvicultural variables defining the ecosystem studied, which were used in allometric equations for the different species, genera and plant associations in the area in order to estimate the amount of aboveground biomass present in each plot. Field data were related to a Landsat 7 ETM+ image by using six different vegetation indices derived from an image mosaic for the area. Two regression equations (relating the amount of aboveground phytomass to the different vegetation indices provided reasonably acceptable phytomass predictions for the type of ecosystem concerned (R² between 0.72 and 0.52La importancia del trabajo de campo en estudios de teledetección radica en la necesidad de proveer una validación a los valores de reflectividad incluidos en los datos de los sensores remotos. La diversidad ecológica del medio forestal y la evaluación de grandes superficies de difícil acceso hacen de la combinación del inventario forestal y de la teledetección una herramienta compleja y útil en el análisis del medio terrestre. El presente trabajo muestra la aplicación de un inventario sistemático estratificado sobre un millón de hectáreas de bosque tropical seco de Prosopis pallida en el Departamento de Piura (Perú en la validación de diferentes tipos de clasificación realizadas sobre dicho ecosistema mediante el uso de imágenes Landsat ETM+. El inventario recoge las principales

  11. Evolution and variability of Solanum RanGAP2, a cofactor in the incompatible interaction between the resistance protein GPA2 and the Globodera pallida effector Gp-RBP-1.

    Science.gov (United States)

    Carpentier, Jean; Grenier, Eric; Esquibet, Magalie; Hamel, Louis-Philippe; Moffett, Peter; Manzanares-Dauleux, Maria J; Kerlan, Marie-Claire

    2013-04-19

    The Ran GTPase Activating Protein 2 (RanGAP2) was first described as a regulator of mitosis and nucleocytoplasmic trafficking. It was then found to interact with the Coiled-Coil domain of the Rx and GPA2 resistance proteins, which confer resistance to Potato Virus X (PVX) and potato cyst nematode Globodera pallida, respectively. RanGAP2 is thought to mediate recognition of the avirulence protein GP-RBP-1 by GPA2. However, the Gpa2-induced hypersensitive response appears to be relatively weak and Gpa2 is limited in terms of spectrum of efficiency as it is effective against only two nematode populations. While functional and evolutionary analyses of Gp-Rbp-1 and Gpa2 identified key residues in both the resistance and avirulence proteins that are involved in recognition determination, whether variation in RanGAP2 also plays a role in pathogen recognition has not been investigated. We amplified a total of 147 RanGAP2 sequences from 55 accessions belonging to 18 different di-and tetraploid Solanum species from the section Petota. Among the newly identified sequences, 133 haplotypes were obtained and 19.1% of the nucleotide sites were found to be polymorphic. The observed intra-specific nucleotide diversity ranges from 0.1 to 1.3%. Analysis of the selection pressures acting on RanGAP2 suggests that this gene evolved mainly under purifying selection. Nonetheless, we identified polymorphic positions in the protein sequence at the intra-specific level, which could modulate the activity of RanGAP2. Two polymorphic sites and a three amino-acid deletion in RanGAP2 were found to affect the timing and intensity of the Gpa2-induced hypersensitive response to avirulent GP-RBP-1 variants even though they did not confer any gain of recognition of virulent GP-RBP-1 variants. Our results highlight how a resistance gene co-factor can manage in terms of evolution both an established role as a cell housekeeping gene and an implication in plant parasite interactions. StRanGAP2 gene

  12. Preparation of Tradescantia pallida-mediated zinc oxide ...

    African Journals Online (AJOL)

    (Commelinaceae) and determine their fluorescent and cytotoxic properties. Methods: ZnO ... Results: The agglomerated ZnO NPs were rod-shaped and had a mean particle size of 25 ± 2 nm. Further ... the leaf material was ground to a powder. Then, .... Figure 1: Zinc oxide nanoparticles (ZnO NPs) X-ray diffraction spectrum.

  13. Effects of harvesting of the namibian kelp ( Laminaria pallida ) on the ...

    African Journals Online (AJOL)

    aged farmers who are expected to be economically active and energetic dominated the sampled population. They should be willing to explore avenues and adopt new methods in order to raise their level of productivity. The relatively large farm ...

  14. Potato crop growth as influenced by potato cyst nematodes (Globodera pallida) and abiotic factors

    NARCIS (Netherlands)

    Ruijter, de F.

    1998-01-01

    The objective of the research described in this thesis was to determine the major mechanisms by which potato cyst nematodes reduce potato crop growth and to explain interactions known to occur with cultivar and abiotic factors. Understanding of these interactions may lead to strategies that

  15. Two new Geosmithia species in G. pallida species complex from bark beetles in eastern USA

    Czech Academy of Sciences Publication Activity Database

    Huang, Y.T.; Kolařík, Miroslav; Kasson, M.T.; Hulcr, J.

    2017-01-01

    Roč. 109, č. 5 (2017) ISSN 0027-5514 Institutional support: RVO:61388971 Keywords : Bionectriaceae * ectosymbiont * North America Subject RIV: EE - Microbiology, Virology OBOR OECD: Microbiology Impact factor: 2.550, year: 2016

  16. Molecular contest between potato and the potato cyst nematode Globodera pallida: modulation of Gpa2-mediated resistance

    NARCIS (Netherlands)

    Koropacka, K.B.

    2010-01-01

    Gpa2 recognition specificity
    Among all the multicellular animals, nematodes are the most numerous. In soil, a high variety
    of free living nematodes feeding on bacteria can be found as well as species that parasitize
    insects, animals or plants. The potato cyst nematode (PCN)

  17. Acute Genotoxic Effects of Effluent Water of Thermo-Power Plant “Kosova” In Tradescantia Pallida

    Directory of Open Access Journals (Sweden)

    I. R. Elezaj, L.B.Millaku, R.H. Imeri-Millaku, Q.I. Selimi, and K. Rr. Letaj

    2011-09-01

    Full Text Available The aim of this study was the evaluation of acute genotoxic effect of effluent water of thermo-power plant by means of Tradescantia root tips micronucleus test (MN, mitotic index and cell aberrations.   Tradescantia, was experimentally treated (for 24 h, with effluent water of thermo-power plant in different dilution ratios (negative control – distilled water; primary untreated effluent water and 1:1; 1:2; 1:3; 1:4; 1:5; 1:6 and 1:7 respectively. Number of aberrant cells, and frequency of micronuclei (MN, in meristematic root tip cells of treated plants (Tradescantia, were significantly increased (P<0.001; P<0.001 respectively, while the mitotic index in all treated plants was progressively decreased in comparison to the negative control. The results of present study indicate that Tradescantia root-tip micronucleus assay with direct exposure of intact plants is an appropriate method which enables to detect genotoxic effects of effluent waters.

  18. Acute Genotoxic Effects of Effluent Water of Thermo-Power Plant “Kosova” In Tradescantia Pallida

    OpenAIRE

    I. R. Elezaj, L.B.Millaku, R.H. Imeri-Millaku, Q.I. Selimi, and K. Rr. Letaj

    2011-01-01

    The aim of this study was the evaluation of acute genotoxic effect of effluent water of thermo-power plant by means of Tradescantia root tips micronucleus test (MN), mitotic index and cell aberrations.   Tradescantia, was experimentally treated (for 24 h), with effluent water of thermo-power plant in different dilution ratios (negative control – distilled water; primary untreated effluent water and 1:1; 1:2; 1:3; 1:4; 1:5; 1:6 and 1:7 respectively). Number of aberrant cells, and frequency of ...

  19. Comparative analysis and culturing of the microbial community of Aiptasia pallida, A Sea Anemone Model for Coral Biology

    KAUST Repository

    Binsarhan, Mohammad

    2016-01-01

    Recent works has highlighted the contribution of microbes to animal function. In this regard, the microbial community associated with corals has become a growing field of research in order to understand how microbes contribute to the host organisms’ response to environmental changes. It has been shown that microbes associated with corals have important functions in the coral holobiont such as immunity and nutrient assimilation. However, corals are notoriously difficult to work with. To this end, the sea anemone Aiptasia is becoming a model organism for coral symbiosis. Given the importance of host-­microbiome interactions, the topic of this thesis is to assess microbial structure of Aiptasia, culture prominent bacterial members, and compare bacterial community structure to corals. Different molecular methods have been applied using 16S rRNA bacterial gene fragments to characterize the microbial composition of Aiptasia. 16S rRNA gene sequence derived from cultured bacteria was compared to 16S rRNA gene sequences retrieved from native Red Sea Aiptasia. Inter-­individual as well as methodological differences were found to account for variance in microbiome composition. However, all approaches showed a highly abundant microbial taxon belonging to the genus Alteromonas in all samples. The Alteromonas species was successfully isolated for further research targeting microbiome selection mechanisms in Aiptasia. Future investigations by using different molecular tools will help to define the functions and relationship between the Aiptasia and its complex microbiome.

  20. Redescription of Cadrema pallida var. bilineata (de Meijere, 1904 (Diptera: Chloropidae and its role as pollinator and carrion feeder from Indian Sunderbans

    Directory of Open Access Journals (Sweden)

    Sankarsan Roy

    2016-10-01

    Full Text Available Sunderbans, the UNESCO World Heritage Site is one of the largest mangrove forests in the World. This unique tidal halophytic mangrove ecosystem is also spread over the neighbouring country- Bangladesh. This ecosystem supports a variety of halophytic mangrove species and provides shelter and food to many faunal components (Chakraborty, 2011. Till date, several studies have been made on dipteran fauna from SBR which was altogether compiled by Mitra (2013. Further, Mitra et al. (2014, 2015 added some more records of the Diptera from this area. Apart from documenting the dipteran insects, we attempted here their functional contribution towards sustainability of this sensitive ecosystem.

  1. Draft Genome Sequence of the Dimorphic Fungus Sporothrix pallida, a Nonpathogenic Species Belonging to Sporothrix, a Genus Containing Agents of Human and Feline Sporotrichosis

    NARCIS (Netherlands)

    D'Alessandro, Enrico; Giosa, Domenico; Huang, Lilin; Zhang, Jing; Gao, Wenchao; Brankovics, Balázs; Oliveira, Manoel Marques Evangelista; Scordino, Fabio; Lo Passo, Carla; Criseo, Giuseppe; van Diepeningen, Anne D; Huang, Huaiqiu; de Hoog, G Sybren; Romeo, Orazio

    2016-01-01

    Sporothrix pallidais considered to be a mostly avirulent environmental fungus, phylogenetically closely related to the well-known pathogenSporothrix schenckii Here, we present the first assembly of its genome, which provides a valuable resource for future comparative genomic studies between

  2. Novel bioassay demonstrates attraction of the white potato cyst nematode Globodera pallida (Stone) to non-volatile and volatile host plant cues.

    Science.gov (United States)

    Farnier, Kevin; Bengtsson, Marie; Becher, Paul G; Witzell, Johanna; Witzgall, Peter; Manduríc, Sanja

    2012-06-01

    Potato cyst nematodes (PCNs) are a major pest of solanaceous crops such as potatoes, tomatoes, and eggplants and have been widely studied over the last 30 years, with the majority of earlier studies focusing on the identification of natural hatching factors. As a novel approach, we focused instead on chemicals involved in nematode orientation towards its host plant. A new dual choice sand bioassay was designed to study nematode responses to potato root exudates (PRE). This bioassay, conducted together with a traditional hatching bioassay, showed that biologically active compounds that induce both hatching and attraction of PCNs can be collected by water extraction of incised potato roots. Furthermore, our results demonstrated that PCN also were attracted by potato root volatiles. Further work is needed to fully understand how PCNs use host plant chemical cues to orientate towards hosts. Nevertheless, the simple attraction assay used in this study provides an important tool for the identification of host-emitted attractants.

  3. Environ: E00717 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available tate, Ethyl myristate, beta-Irone, ethyl laurate Iris pallida [TAX:29817] ... Iridaceae Iris pallida pulverized rhizomes Obtained by ste...am distillation Major component: alpha-Irone [CPD:C09690] CAS: 8002-73-1

  4. Micronúcleos em tétrades de Tradescantia pallida (Rose Hunt. cv. purpurea Boom: alterações genéticas decorrentes de poluição aérea urbana = Micronuclei in tetrads of Tradescantia pallida (Rose Hunt. cv. purpurea Boom: genetic changes caused by urban air pollution

    Directory of Open Access Journals (Sweden)

    Sizenando José de Andrade Júnior

    2008-07-01

    Full Text Available A atmosfera urbana contém uma mistura de poluentes que inclui substâncias mutagênicas e carcinogênicas. Associação entre estas substâncias e problemas respiratório e cardiovascular, além do aumento de determinados tipos de cânceres, é estabelecida na literatura. Assim, o biomonitoramento é importante para avaliar o potencial genotóxico da atmosfera urbana. O Teste de Micronúcleo em Tradescantia (Trad-MCN é um dos bioensaios usados para detecção de efeitos genotóxicos. Este teste é baseado na formação de micronúcleos resultante de quebra cromossômica na meiose das células-mãe do grão de pólen de inflorescências de Tradescantia ssp. Neste estudo, Trad-MCN foi utilizado para avaliar o potencial mutagênico do aratmosférico em duas áreas de tráfego diferenciado na cidade de Senhor do Bonfim, Estado da Bahia: 1 Rodovia Lomanto Júnior (RLJ, uma área de tráfego intenso, e 2 Praça Nova do Congresso (PNC, área de menor fluxo de veículos. O controle negativo (CTR foi instalado noCampus VII da Universidade do Estado da Bahia. Plantas expostas na RLJ e na PNC apresentaram frequência de micronúcleo (MCN mais alta em comparação com as plantas CTR (p The urban atmosphere contains a mixture of air pollutants, including mutagenic and carcinogenic substances. Associations betweenurban pollutants and respiratory/cardiovascular diseases and a greater incidence of certain cancer types have already been established in literature. Thus, biomonitoring procedures are required to evaluate the genotoxic potential of urban atmospheres. The Tradescantia micronucleus (Trad- MCN test is one of the most commonly used bioassays for the detection of genotoxic effects. Itis based on the formation of micronuclei resulting from chromosome breakage in the meiotic pollen mother cells of Tradescantia ssp. inflorescences. This study dealt with Trad-MCN for assessing the genotoxic potential of air in two areas of the municipality of Senhor do Bonfim/BA: (1 Lomanto Júnior Highway (RLJ, an area of intense vehicular traffic; and (2 Nova do Congresso Plaza (PNC, an area with lower flow of vehicles. The negative control (CTR wasinstalled in Campus VII of the State University of Bahia. Plants exposed in RLJ and PNC presented the highest frequency of micronuclei (MCN, in comparison with CTR plants (p < 0.05. The increase in the frequency of observed MCN points to the efficiency of the Trad-MCN and indicates the potential mutagenic risk of substances present in atmospheric air.

  5. De la especie al ecosistema; del ecosistema a la sociedad: revalorizando el algarrobo (ProsoPis Pallida) y el reto de su conservación en Lambayeque y en la costa norte del Perú

    OpenAIRE

    Cuentas Romero, María Alejandra; Salazar Toledo, Arturo Ítalo

    2017-01-01

    El artículo muestra la relevancia de una especie clave —Prosopis pallida— en el desarrollo ecológico del bosque seco costero, y cómo dicha importancia también influye en el desarrollo humano, pues con el tiempo se ha ido fortaleciendo el vínculo social con los ecosistemas forestales. Mediante el método de muestreo por transectos (punto-centro-cuadrado) y el valor obtenido por medio del Índice de Valor de Importancia (IVI) aplicados al Área de Conservación Regional (ACR) Huacrupe La Calera (Ol...

  6. Micronúcleos em tétrades de Tradescantia pallida (Rose Hunt. cv. purpúrea Boom: alterações genéticas decorrentes de poluição aérea urbana - DOI: 10.4025/actascibiolsci.v30i3.5017 Micronuclei in tetrads of Tradescantia pallida (Rose Hunt. cv. purpurea Boom: genetic changes caused by urban air pollution - DOI: 10.4025/actascibiolsci.v30i3.5017

    Directory of Open Access Journals (Sweden)

    Eneida de Moraes Marcílio Cerqueira

    2008-10-01

    Full Text Available A atmosfera urbana contém uma mistura de poluentes que inclui substâncias mutagênicas e carcinogênicas. Associação entre estas substâncias e problemas respiratório e cardiovascular, além do aumento de determinados tipos de cânceres, é estabelecida na literatura. Assim, o biomonitoramento é importante para avaliar o potencial genotóxico da atmosfera urbana. O Teste de Micronúcleo em Tradescantia (Trad-MCN é um dos bioensaios usados para detecção de efeitos genotóxicos. Este teste é baseado na formação de micronúcleos resultante de quebra cromossômica na meiose das células-mãe do grão de pólen de inflorescências de Tradescantia ssp. Neste estudo, Trad-MCN foi utilizado para avaliar o potencial mutagênico do ar atmosférico em duas áreas de tráfego diferenciado na cidade de Senhor do Bonfim, Estado da Bahia: 1 Rodovia Lomanto Júnior (RLJ, uma área de tráfego intenso, e 2 Praça Nova do Congresso (PNC, área de menor fluxo de veículos. O controle negativo (CTR foi instalado no Campus VII da Universidade do Estado da Bahia. Plantas expostas na RLJ e na PNC apresentaram frequência de micronúcleo (MCN mais alta em comparação com as plantas CTR (p The urban atmosphere contains a mixture of air pollutants, including mutagenic and carcinogenic substances. Associations between urban pollutants and respiratory/cardiovascular diseases and a greater incidence of certain cancer types have already been established in literature. Thus, biomonitoring procedures are required to evaluate the genotoxic potential of urban atmospheres. The Tradescantia micronucleus (Trad-MCN test is one of the most commonly used bioassays for the detection of genotoxic effects. It is based on the formation of micronuclei resulting from chromosome breakage in the meiotic pollen mother cells of Tradescantia ssp. inflorescences. This study dealt with Trad-MCN for assessing the genotoxic potential of air in two areas of the municipality of Senhor do Bonfim/BA: (1 Lomanto Júnior Highway (RLJ, an area of intense vehicular traffic; and (2 Nova do Congresso Plaza (PNC, an area with lower flow of vehicles. The negative control (CTR was installed in Campus VII of the State University of Bahia. Plants exposed in RLJ and PNC presented the highest frequency of micronuclei (MCN, in comparison with CTR plants (p < 0.05. The increase in the frequency of observed MCN points to the efficiency of the Trad-MCN and indicates the potential mutagenic risk of substances present in atmospheric air.

  7. Observations on some species of the genus Lyramorpha Westw. (Hemiptera Heteroptera)

    NARCIS (Netherlands)

    Schouteden, H.

    1908-01-01

    1. Lyramorpha pallida Westwood and L. rosea Westwood. In his »Catalogue of Hemiptera in the Collection of the Rev. W. F. Hope”, part I, London 1837, Westwood founded the genus Lyramorpha, with two species, L. rosea and L. pallida, both from New Holland.

  8. Control of Globodera spp. using Brassica juncea seed meal and seed meal extract

    Science.gov (United States)

    The eradication program for the potato cyst nematode, Globodera pallida, revolves around the use of soil fumigation. Alternative, integrated strategies are needed to continue to battle this invasive nematode. Laboratory, greenhouse, and field experiments were conducted with G. pallida and another cy...

  9. Molecular and genetic analyses of potato cyst nematode resistance loci

    NARCIS (Netherlands)

    Bakker, E.H.

    2003-01-01

    This thesis describes the genomic localisation and organisation of loci that harbour resistance to the potato cyst nematode species Globodera pallida and G. rostochiensis . Resistance to the potato cyst nematodes G. pallida and G. rostochiensis is an important aspect in potato breeding. To gain

  10. Molecular diagnostics of potato cyst nematodes (PCN) from the national survey

    Science.gov (United States)

    The potato cyst nematodes (PCN) Globodera rostochiensis and G. pallida are regulated pathogens of potato, a crop worth nearly $3.9 billion in the United States. Since the initial discovery of G. pallida in Idaho in 2006, extensive surveys of the major potato growing acreage have been carried out, to...

  11. A Pest of Importance

    Science.gov (United States)

    Potato cyst nematodes (PCN), G. rostochiensis and G. pallida, are internationally-recognized quarantine pests and considered the most devastating pests of potatoes worldwide. PCNs continue to spread throughout North America and were recently detected in Idaho (G. pallida) and Quebec and Alberta, Can...

  12. Multiplex real-time PCR assays for the identification of the potato cyst and tobacco cyst nematodes

    Science.gov (United States)

    TaqMan primer-probe sets were developed for the detection and identification of potato cyst nematodes (PCN) Globodera pallida and G. rostochiensis using two-tube, multiplex real-time PCR. One tube contained a primer-probe set specific for G. pallida (pale cyst nematode) multiplexed with another prim...

  13. Environ: E00764 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available E00764 Echinacea Medicinal herb Caffeic acid derivatives, Echinacoside [CPD:C10450... Isobutyramide, Essential ... oil, Pyrrolizidine alkaloid Echinacea angustifolia [TAX:308558], Echinacea pallida [TAX:53749], Echina...cea purpurea [TAX:53751] ... Asteraceae Echinacea aerial part a

  14. Population dynamics of potato cyst nematodes and associated damage to potato

    NARCIS (Netherlands)

    Schans, J.

    1993-01-01

    Population dynamics of potato cyst nematodes (PCN; Globoderarostochiensis (Woll.) Skarbilovich and G. pallida Stone) and their interactions with potato plants are insufficiently understood to explain variations of population

  15. 76 FR 46632 - Endangered and Threatened Wildlife and Plants; Removal of Echinacea tennesseensis (Tennessee...

    Science.gov (United States)

    2011-08-03

    ... Echinacea only supported recognition of one of the five varieties of E. pallida that Binns et al. (2002, pp.... 2). These middle Tennessee habitats typically occur on thin plates of Lebanon limestone that are...

  16. Activity of pyrrolizidine alkaloids against biofilm formation and Trichomonas vaginalis

    Science.gov (United States)

    Crotalaria genus belongs to the subfamily Papilionoideae comprising about 600 species spread throughout tropical, neotropical and subtropical regions. In this study, seeds of Crolatalaria pallida were used to the isolation of usaramine, a pyrrolizidine alkaloid. Thus, Pseudomonas aeruginosa and Stap...

  17. First insight into the viral community of the cnidarian model metaorganism Aiptasia using RNA-Seq data

    KAUST Repository

    Brü wer, Jan D.; Voolstra, Christian R.

    2018-01-01

    of the globally threatened coral reef ecosystems. To gain first insight into viruses associated with the coral model system Aiptasia (sensu Exaiptasia pallida), we analyzed an existing RNA-Seq dataset of aposymbiotic, partially populated, and fully symbiotic

  18. Seed Biology of Medicinal Plants (IX) : The Relationship of Corydalis Species Derived by Gel Electrophoresis

    OpenAIRE

    米田, 該典; 加賀, 順二; 那須, 正夫; KAISUKE, YONEDA; JUNJI, KAGA; MASAO, NASU; 大阪大学薬学部; 大阪大学薬学部; 大阪大学薬学部; Faculty of Pharmaceutical Sciences, Osaka University; Faculty of Pharmaceutical Sciences, Osaka University; Faculty of Pharmaceutical Sciences, Osaka University

    1987-01-01

    The saline soluble protein fraction of seeds of the Corydalis species (Papaveraceae) in Japan was examined by polyacrylamide gel electrophoresis and SDS-polyacrylamide gel electrophoresis. The esterase zymogram suggested that C. pallida, C. pallida var. tenuis, C. heterocarpa var. japonica and C. speciosa, having yellow flowers and no tuber, are closely related to each other. Electrophoresis and SDS-electrophoresis patterns also coincided with the result of the esterase zymogram. They also su...

  19. flp-32 Ligand/receptor silencing phenocopy faster plant pathogenic nematodes.

    Science.gov (United States)

    Atkinson, Louise E; Stevenson, Michael; McCoy, Ciaran J; Marks, Nikki J; Fleming, Colin; Zamanian, Mostafa; Day, Tim A; Kimber, Michael J; Maule, Aaron G; Mousley, Angela

    2013-02-01

    Restrictions on nematicide usage underscore the need for novel control strategies for plant pathogenic nematodes such as Globodera pallida (potato cyst nematode) that impose a significant economic burden on plant cultivation activities. The nematode neuropeptide signalling system is an attractive resource for novel control targets as it plays a critical role in sensory and motor functions. The FMRFamide-like peptides (FLPs) form the largest and most diverse family of neuropeptides in invertebrates, and are structurally conserved across nematode species, highlighting the utility of the FLPergic system as a broad-spectrum control target. flp-32 is expressed widely across nematode species. This study investigates the role of flp-32 in G. pallida and shows that: (i) Gp-flp-32 encodes the peptide AMRNALVRFamide; (ii) Gp-flp-32 is expressed in the brain and ventral nerve cord of G. pallida; (iii) migration rate increases in Gp-flp-32-silenced worms; (iv) the ability of G. pallida to infect potato plant root systems is enhanced in Gp-flp-32-silenced worms; (v) a novel putative Gp-flp-32 receptor (Gp-flp-32R) is expressed in G. pallida; and, (vi) Gp-flp-32R-silenced worms also display an increase in migration rate. This work demonstrates that Gp-flp-32 plays an intrinsic role in the modulation of locomotory behaviour in G. pallida and putatively interacts with at least one novel G-protein coupled receptor (Gp-flp-32R). This is the first functional characterisation of a parasitic nematode FLP-GPCR.

  20. flp-32 Ligand/receptor silencing phenocopy faster plant pathogenic nematodes.

    Directory of Open Access Journals (Sweden)

    Louise E Atkinson

    2013-02-01

    Full Text Available Restrictions on nematicide usage underscore the need for novel control strategies for plant pathogenic nematodes such as Globodera pallida (potato cyst nematode that impose a significant economic burden on plant cultivation activities. The nematode neuropeptide signalling system is an attractive resource for novel control targets as it plays a critical role in sensory and motor functions. The FMRFamide-like peptides (FLPs form the largest and most diverse family of neuropeptides in invertebrates, and are structurally conserved across nematode species, highlighting the utility of the FLPergic system as a broad-spectrum control target. flp-32 is expressed widely across nematode species. This study investigates the role of flp-32 in G. pallida and shows that: (i Gp-flp-32 encodes the peptide AMRNALVRFamide; (ii Gp-flp-32 is expressed in the brain and ventral nerve cord of G. pallida; (iii migration rate increases in Gp-flp-32-silenced worms; (iv the ability of G. pallida to infect potato plant root systems is enhanced in Gp-flp-32-silenced worms; (v a novel putative Gp-flp-32 receptor (Gp-flp-32R is expressed in G. pallida; and, (vi Gp-flp-32R-silenced worms also display an increase in migration rate. This work demonstrates that Gp-flp-32 plays an intrinsic role in the modulation of locomotory behaviour in G. pallida and putatively interacts with at least one novel G-protein coupled receptor (Gp-flp-32R. This is the first functional characterisation of a parasitic nematode FLP-GPCR.

  1. Novos Cerambycinae (Cerambycidae da Região Neotropical

    Directory of Open Access Journals (Sweden)

    Maria Helena M. Galileo

    2008-01-01

    Full Text Available Descrevem-se e ilustram-se espécies novas da Bolívia (Santa Cruz, em Ectenessini, Ectenessa zamalloae sp. nov. e Bomarion amborense sp. nov.; em Eburiini, Beraba pallida sp. nov.; em Piezocerini, Gorybia quadrispinosa sp. nov. e em Tillomorphini, Epropetes bolivianus sp. nov.; da Costa Rica (Guanacaste, Xalitla lezamai sp. nov.New species described and illustrated from Bolivia (Santa Cruz, in Ectenessini: Ectenessa zamalloae sp. nov. and Bomarion amborense sp. nov.; in Eburiini: Beraba pallida sp. nov.; in Piezocerini: Gorybia quadrispinosa sp. nov. and in Tillomorphini: Epropetes bolivianus sp. nov.; from Costa Rica (Guanacaste: Xalitla lezamai sp. nov.

  2. Community Impacts of Prosopis juliflora Invasion: Biogeographic and Congeneric Comparisons

    OpenAIRE

    Kaur, Rajwant; Gonzáles, Wilfredo L.; Llambi, Luis Daniel; Soriano, Pascual J.; Callaway, Ragan M.; Rout, Marnie E.; Gallaher, Timothy J.; Inderjit,

    2012-01-01

    We coordinated biogeographical comparisons of the impacts of an exotic invasive tree in its native and non-native ranges with a congeneric comparison in the non-native range. Prosopis juliflora is taxonomically complicated and with P. pallida forms the P. juliflora complex. Thus we sampled P. juliflora in its native Venezuela, and also located two field sites in Peru, the native range of Prosopis pallida. Canopies of Prosopis juliflora, a native of the New World but an invader in many other r...

  3. Shrub biomass production following simulated herbivory: A test of the compensatory growth hypothesis

    Science.gov (United States)

    Terri B. Teaschner; Timothy E. Fulbright

    2007-01-01

    The objective of this experiment was to test the hypotheses that 1) simulated herbivory stimulates increased biomass production in spiny hackberry (Celtis pallida), but decreases biomass production in blackbrush acacia (Acacia rigidula) compared to unbrowsed plants and 2) thorn density and length increase in blackbrush acacia to a...

  4. Effect of Leucaena and Sesbania supplementation on body growth and scrotal circumference of Ethiopian highland sheep and goats fed teff straw basal diet

    NARCIS (Netherlands)

    Kaitho, R.J.; Tegegne, A.; Umunna, N.N.; Nsahlai, I.V.; Tamminga, S.; Bruchem, J. van; Arts, J.M.

    1998-01-01

    The long term effect of supplementation of Leucaena pallida and Sesbania sesban on growth and reproduction performance was determined on 30 male Ethiopian highland sheep and 25 East African goats. Unchopped teff straw (Eragrostis tef) was given ad libitum and supplemented with either wheat bran (150

  5. Solanum sisymbriifolium (Lam.) : a trap crop for potato cyst nematodes

    NARCIS (Netherlands)

    Timmermans, B.G.H.

    2005-01-01

    Keywords:Solanumsisymbriifolium ,Globoderapallida ,Globoderarostochiensis ,

  6. Descriptions of four new species of Semia Matsumura (Hemiptera: Cicadidae: Psithyristriini) from Vietnam, with a key to the species of Semia.

    Science.gov (United States)

    Emery, David L; Lee, Young June; Pham, Hong-Thai

    2017-01-04

    This paper provides descriptions of four new species of the genus Semia Matsumura, 1917 from Vietnam: Semia magna sp. nov., Semia spiritus sp. nov., Semia pallida sp. nov., and Semia albusequi sp. nov. A key to the 13 species of Semia is provided.

  7. PCR detection of potato cyst nematode.

    Science.gov (United States)

    Reid, Alex

    2009-01-01

    Potato cyst nematode (PCN) is responsible for losses in potato production totalling millions of euros every year in the EC. It is important for growers to know which species is present in their land as this determines its subsequent use. The two species Globodera pallida and Globodera rostochiensis can be differentiated using an allele-specific PCR.

  8. Transgenic potatoes for potato cyst nematode control can replace pesticide use without impact on soil quality.

    Science.gov (United States)

    Green, Jayne; Wang, Dong; Lilley, Catherine J; Urwin, Peter E; Atkinson, Howard J

    2012-01-01

    Current and future global crop yields depend upon soil quality to which soil organisms make an important contribution. The European Union seeks to protect European soils and their biodiversity for instance by amending its Directive on pesticide usage. This poses a challenge for control of Globodera pallida (a potato cyst nematode) for which both natural resistance and rotational control are inadequate. One approach of high potential is transgenically based resistance. This work demonstrates the potential in the field of a new transgenic trait for control of G. pallida that suppresses root invasion. It also investigates its impact and that of a second transgenic trait on the non-target soil nematode community. We establish that a peptide that disrupts chemoreception of nematodes without a lethal effect provides resistance to G. pallida in both a containment and a field trial when precisely targeted under control of a root tip-specific promoter. In addition we combine DNA barcoding and quantitative PCR to recognise nematode genera from soil samples without microscope-based observation and use the method for nematode faunal analysis. This approach establishes that the peptide and a cysteine proteinase inhibitor that offer distinct bases for transgenic plant resistance to G. pallida do so without impact on the non-target nematode soil community.

  9. Potato transformation and potato cyst nematode infection on potato plantlets in tissue culture

    Science.gov (United States)

    These two protocols describe the methods for generating transgenic potato plants and for evaluating potato cyst nematode (Globodera rostochiensis and G. pallida) infection on potato plantlets in tissue culture. These methods are useful tools that can be used in the study of the interactions between ...

  10. Morphology and DNA sequence data reveal the presence of Globodera ellingtonae in the Andean region

    NARCIS (Netherlands)

    Lax, P.; Rondan Dueñas, J.C.; Franco-Ponce, J.; Gardenal, C.N.; Doucet, M.E.

    2014-01-01

    Potato cyst nematodes, G. rostochiensis and G. pallida, are the most economically important nematode pests of potatoes worldwide and are subject to strict quarantine regulations in many countries. Globodera ellingtonae was recently described from Oregon (USA), with its host-plant in the field being

  11. The draft genome of Globodera ellingtonae

    Science.gov (United States)

    Globodera ellingtonae is a newly described potato cyst nematode found in Idaho, Oregon, and Argentina. Here we present a genome assembly for G. ellingtonae, a relative of the quarantine nematodes G. pallida and G. rostochiensis, produced using data from Illumina and Pacific Biosciences sequencing te...

  12. Introgression of Globodera resistance into the russet market class

    Science.gov (United States)

    Two species of potato cyst nematode (Globodera rostochiensis and G. pallida,) have been identified in the U.S. and are under quarantine regulations, with a third newly identified species (G. ellingtonae) not categorized as a quarantined pest. Management of G. rostochiensis in the state of New York ...

  13. A new chorismate mutase gene identified from Globodera ellingtonae and its utility as a molecular diagnostic marker

    Science.gov (United States)

    Globodera ellingtonae, a new cyst nematode species recently detected in Oregon and confirmed of reproduction on potato, shares key morphological features with the two species of potato cyst nematode (PCN; G. rostochiensis and G. pallida) of quarantine concern. Currently no methods are available for ...

  14. PCR-RFLP diagnostic method for identifying Globodera species in Slovenia

    Directory of Open Access Journals (Sweden)

    Sasa ŠIRCA

    2011-01-01

    Full Text Available Species identification within the genus Globodera is based on the morphological and morphometrical characters of the cysts and second stage juveniles, and these are included in the majority of identification keys. Morphometrical methods are fast and can be applied to most of samples but they demand a trained and experienced specialist. Furthermore, some morphometrical characters may overlap between populations and beetwen species, leading to inaccurate identification. To confirm and complement the morphometrical identification of Globodera species molecular methods have been developed. Sequences of the internal transcribed spacer regions ITS1 and ITS2 of the rDNA gene cluster proved to be useful for identifying nematode species identification. A PCR-RFLP molecular method was used to identify Globodera rostochiensis, G. pallida, G. tabacum and G. achilleae. Globodera rostochiensis, G. pallida, G. tabacum and G. achilleae can be distinguished with PCR-RFLP analysis of the rDNA ITS fragment using five restriction enzymes. The RFLP patterns of G. rostochiensis, G. tabacum and G. achilleae were species-specific, while those of G. pallida varied. South American populations of G. pallida differed from other populations as their RFLP patterns were demonstrated to be distinct by in silico restriction of the ITS sequences deposited at NCBI.

  15. Genetic diversity of Kenyan Prosopis populations based on random ...

    African Journals Online (AJOL)

    To determine whether naturally established stands consist of a single or mixture of species, six populations from Bamburi, Bura, Isiolo, Marigat, Taveta and Turkwel were compared for relatedness with reference to Prosopis chilensis, Prosopis juliflora and Prosopis pallida using random amplified polymorphic DNA markers.

  16. Towards identification of oesophageal gland proteins in Globodera rostochiensis

    NARCIS (Netherlands)

    Boer, de J.M.

    1996-01-01


    Secretory proteins from the dorsal and subventral oesophageal glands of potato cyst- nematodes (Globodera rostochiensis and G.pallida ) are considered to play an important role in the induction and exploitation of the

  17. Compilation of Reprints Number 57,

    Science.gov (United States)

    1981-01-01

    Lam’panyclus jordan: 1. 2. 61, 3. 4. 6 1.3. 6, 7 Lampanyous regalia~ 2 1,3, 4. 6. 16 7 .2. 3 Oiap/sus dieta 2 4 2 . * Cyclothome pallida 23. 4. .6...Thalassiothrix spp. -- T. mediterranea /T, longissima - T. frauen- feldii Further analysis then was based on the resulting 43 taxonomic categories. The matrix of

  18. Assessing the pathogenic effect of Fusarium, Geosmithia and Ophiostoma fungi from broad-leaved trees

    Czech Academy of Sciences Publication Activity Database

    Čížková, D.; Šrůtka, P.; Kolařík, Miroslav; Kubátová, A.; Pažoutová, Sylvie

    2005-01-01

    Roč. 50, č. 1 (2005), s. 59-62 ISSN 0015-5632 R&D Projects: GA ČR GA203/00/0219; GA ČR GA522/02/1206 Institutional research plan: CEZ:AV0Z5020903 Keywords : fusarium * geosmithia pallida * scolytus intricatus Subject RIV: EE - Microbiology, Virology Impact factor: 0.918, year: 2005

  19. Genetic diversity of the potato cyst nematode in the Netherlands

    NARCIS (Netherlands)

    Folkertsma, R.T.

    1997-01-01


    The potato cyst nematodes Globodera rostochiensis (Woll.) Skarbilovich and G. pallida (Stone) originate from the Andes region in South America and have been introduced into Western Europe since 1850. Both species are

  20. 75 FR 11111 - Pale Cyst Nematode; Update of Quarantined Areas

    Science.gov (United States)

    2010-03-10

    ...] Pale Cyst Nematode; Update of Quarantined Areas AGENCY: Animal and Plant Health Inspection Service...: Background The pale cyst nematode (PCN, Globodera pallida) is a major pest of potato crops in cool... made changes to the area in the State of Idaho that is quarantined to prevent the spread of pale cyst...

  1. Potato cyst nematodes: pests of national importance

    Science.gov (United States)

    Potato cyst nematodes (PCN; G. rostochiensis and G. pallida) are internationally-recognized quarantine pests and considered the most devastating pests of potatoes due to annual worldwide yield losses estimated at 12.2%. PCNs continue to spread throughout North America and were recently detected in I...

  2. The relationship between temperature and development in Globodera ellingtonae

    Science.gov (United States)

    A new cyst nematode species, Globodera ellingtonae, was recently described from populations in Oregon and Idaho; this nematode has been shown to reproduce on potato. Because of this nematodes close relationship to the potato cyst nematodes, G. rostochiensis and G. pallida, an understanding of the ri...

  3. Penicillium oxalicum reduces the number of cysts and juveniles of potato cyst nematodes.

    Science.gov (United States)

    Martinez-Beringola, M L; Salto, T; Vázquez, G; Larena, I; Melgarejo, P; De Cal, A

    2013-07-01

    To test the biocontrol potential of Penicillium oxalicum, a biocontrol agent against fungal diseases and against the potato cyst nematodes (PCNs), Globodera pallida and Globodera rostochiensis. We tested the effect of P. oxalicum on the nematode cysts under laboratory conditions or in soil microcosms. A reduction in the rate of G. pallida juveniles hatching by P. oxalicum was observed when root diffusates from the 'Monalisa' and the 'Désirée' potato cultivar were used (98·6 and 74·1% reduction, respectively). However, the rate of G. pallida juveniles hatching was not significantly reduced when root diffusates from the 'San Pedro' tomato cultivar were used. Penicillium oxalicum also significantly reduced the ability of the G. rostochiensis juveniles to hatch (30·9% reduction) when root diffusates of the 'Désirée' potato cultivars were used. Penicillium oxalicum treatment of the soil significantly reduced the number of G. pallida cysts that were recovered from the soil of each pot that contained the 'Désirée' potato cultivar. Our results show that P. oxalicum is a potential biocontrol inoculant for protecting potato crops against PCNs. Penicillium oxalicum has potential to be used in order to reduce PCNs. Journal of Applied Microbiology © 2013 The Society for Applied Microbiology.

  4. Draft transcriptome of Globodera ellingtonae

    Science.gov (United States)

    The recently described cyst nematode species, Globodera ellingtonae, is a phylogenetic intermediary between the potato cyst nematodes (PCN), G. rotochiensis and G. pallida, and as such provides a new avenue for understanding the evolution and biology of PCN. Given that assembled genomes and transcri...

  5. Developmental dynamics of Globodera ellingtonae in field-grown potato

    Science.gov (United States)

    Globodera ellingtonae is a recently described nematode parasite of potato, which is closely related to the economically-significant potato cyst nematodes, G. rostochiensis and G. pallida. Because of the close relationship of G. ellingtonae to the potato cyst nematodes, a greater understanding of its...

  6. Transgenic potatoes for potato cyst nematode control can replace pesticide use without impact on soil quality.

    Directory of Open Access Journals (Sweden)

    Jayne Green

    Full Text Available Current and future global crop yields depend upon soil quality to which soil organisms make an important contribution. The European Union seeks to protect European soils and their biodiversity for instance by amending its Directive on pesticide usage. This poses a challenge for control of Globodera pallida (a potato cyst nematode for which both natural resistance and rotational control are inadequate. One approach of high potential is transgenically based resistance. This work demonstrates the potential in the field of a new transgenic trait for control of G. pallida that suppresses root invasion. It also investigates its impact and that of a second transgenic trait on the non-target soil nematode community. We establish that a peptide that disrupts chemoreception of nematodes without a lethal effect provides resistance to G. pallida in both a containment and a field trial when precisely targeted under control of a root tip-specific promoter. In addition we combine DNA barcoding and quantitative PCR to recognise nematode genera from soil samples without microscope-based observation and use the method for nematode faunal analysis. This approach establishes that the peptide and a cysteine proteinase inhibitor that offer distinct bases for transgenic plant resistance to G. pallida do so without impact on the non-target nematode soil community.

  7. The fauna and flora of a kelp bed canopy | Allen | African Zoology

    African Journals Online (AJOL)

    The fauna and flora of the canopy of a kelp bed off Oudekraal, on the Cape Peninsula, Is surveyed. Four species of epiphytic algae occur In the kelp canopy, three restricted to Ecklonia maxima and the fourth to Laminaria pallida. Epiphyte biomass is equivalent to 4-9% of host standing crop amongst E. maxima, but less than ...

  8. Untitled

    Indian Academy of Sciences (India)

    The Development of Herdmania pallida (Heller) 183. 12 hours. After fixation, metamorphosis is marked by the contraction of the tail. The contents of the latter break up into small bits and are resorbed, the resorption beginning from the posterior end, until finally the outer cuticle of the tail remains for sometime as a hollow tube ...

  9. Host resistance in potato to three Globodera species

    Science.gov (United States)

    Potato cyst nematodes (PCN) under quarantine in the U.S. and Canada are the pale cyst nematode (Globodera pallida) and the golden cyst nematode (G. rostochiensis). A new species, G. ellingtonae was discovered in Oregon and Idaho in 2008 and is not currently a quarantine pest. In 2006 detection of ...

  10. Breeding and development of Globodera-resistant potato varieties with long tuber shape and russet skin for production in the western United States

    Science.gov (United States)

    Two species of potato cyst nematode (Globodera rostochiensis, and G. pallida,) have been identified in the U.S. and are under quarantine regulations, with a third newly identified species (G. ellingtonae) not categorized as a quarantined pest. Management of G. rostochiensis in the state of New York...

  11. Genetic mapping and pyramiding of resistance genes in potato

    NARCIS (Netherlands)

    Tan, M.Y.A.

    2008-01-01

    Numerous pathogens can infect potato, but late blight (Phytophthora infestans (Mont.) de Bary) and potato cyst nematodes (PCN) Globodera rostochiensis and G. pallida are most damaging. Several species of root knot nematodes (RKN) are an emerging threat. Breeders have successfully deployed disease

  12. Prosopis pods as human food, with special reference to Kenya ...

    African Journals Online (AJOL)

    The first documented introduction of Prosopis in Kenya was in 1973, since when it has spread widely, adversely affecting natural habitats, rangelands and cultivated areas. P. juliflora is the most common naturalised species in Kenya, but P. pallida also occurs. In contrast to their undesirable effects as invasive weeds, many ...

  13. Is dimethylsulfoniopropionate (DMSP) produced by the symbionts or the host in an anemone-zooxanthella symbiosis?

    Science.gov (United States)

    van Alstyne, K. L.; Dominique, V. J.; Muller-Parker, G.

    2009-03-01

    Many groups of tropical cnidarians including scleractinian corals, octocorals, corallimorphs, and anemones contain the tertiary sulfonium compound dimethylsulfoniopropionate (DMSP). It is not known if the compound is synthesized by the animals, their microalgal symbionts, or derived through their diet. We determined the source of the DMSP in several species of tropical and temperate anemones using three approaches: (1) conducting comparative measurements of DMSP in aposymbiotic and zooxanthellate anemones of three species that harbor zooxanthellae, and similar measurements in one species that can harbor both zooxanthellae and zoochlorellae, (2) manipulating the presence or absence of zooxanthellae by inoculating juvenile aposymbiotic anemones ( Aiptasia pallida) with their symbiont, Symbiodinium bermudense, and (3) manipulating the numbers of S. bermudense by growing aposymbiotic and zooxanthellate A. pallida in the light and the dark. DMSP was present in zooxanthellate anemones in concentrations of 3.4-15 μmol g-1 fresh mass (FM). In aposymbiotic Aiptasia spp. and Anthopleura elegantissima that lacked large numbers of zooxanthellae, concentrations ranged from being undetectable to 0.43 μmol g-1 FM. When aposymbiotic A. pallida were inoculated with zooxanthellae, concentrations of DMSP were an average of 4.24 μmol g-1 FM after 5 weeks; DMSP was undetectable in uninoculated control animals. Aposymbiotic anemones maintained in the light or the dark for 6 weeks contained no DMSP or zooxanthellae. Zooxanthellate anemones in the light contained five times as many zooxanthellae and approximately 7.5 times as much DMSP as zooxanthellate anemones maintained in the dark. Taken together, these data show that the zooxanthellae are the sole source of DMSP in A. pallida. The trends in DMSP concentrations in other species of zooxanthellate anemones suggest that this phenomenon is not limited to A. pallida but may be more generally true for other anemones or even other

  14. Efeito de extratos aquosos de meliáceas sobre Bemisia tabaci biótipo B em tomateiro Effect of aqueous extracts of meliaceous plants on Bemisia tabaci B biotype on tomato plants

    Directory of Open Access Journals (Sweden)

    ANTONIO PANCRÁCIO DE SOUZA

    2000-01-01

    Full Text Available Comparou-se a bioatividade de extratos aquosos a 3% (p/v de três meliáceas, Melia azedarach L. (frutos verdes, Trichilia pallida Swartz (ramos e Azadirachta indica A. Juss (sementes, em relação à mosca branca Bemisia tabaci (Gennadius biótipo B, criada em tomateiro. No primeiro experimento os extratos foram aplicados sobre ovos e sobre ninfas com três dias de idade, avaliando-se a mortalidade e a duração das fases de ovo e de ninfa. No segundo experimento os extratos foram aplicados apenas sobre as ninfas, avaliando-se a mortalidade nessa fase e a longevidade e fecundidade dos adultos. Em relação à fase de ovo, o extrato de T. pallida foi o que provocou maior mortalidade, seguindo-se os de A. indica e M. azedarach. A maior mortalidade ninfal foi constatada com o extrato de A. indica, seguindo-se os de T. pallida e M. azedarach. Nenhum dos extratos afetou a duração das fases de ovo e de ninfa, assim como a longevidade e fecundidade.The objective of this research was to compare the effect of aqueous extracts of fresh fruits of Melia azedarach L., twigs of Trichilia pallida Swartz and seeds of zadirachta indica A. Juss, on eggs and nymphs of silverleaf whitefly Bemisia tabaci (Gennadius B biotype reared on tomato plants. The extracts were tested at a concentration of 3%. In the first experiment, the extracts were applied on eggs and 3-day-old nymphs. Records were taken on mortality, duration of egg and nymphal stages. In the second experiment the extracts were applied on 3-day-old nymphs and records were taken on nymphal mortality, adult longevity and fecundity. The extracts of T. pallida were the most effective on eggs, followed by A. indica and M. azedarach. The extracts of A. indica were the most effective on nymphs followed by T. pallida and M. azedarach. In both experiments, the duration of egg and nymph stages, longevity and fecundity were not affected by the extracts.

  15. Novo registro e novas espécies de Cerambycinae (Coleoptera, Cerambycidae de Trinidad and Tobago e da Venezuela

    Directory of Open Access Journals (Sweden)

    Ubirajara R. Martins

    2010-01-01

    Full Text Available Novas espécies descritas de Trinidad and Tobago: Plocaederus dozieri sp. nov. (Cerambycini, Cerambycina, Anelaphus trinidadensis sp. nov. (Elaphidionini, Piezocera rufula sp. nov. (Piezocerini, Assycuera marcelae sp. nov. and Ceralocyna venusta sp. nov. (Trachyderini, Ancylocerina. Neocompsa pallida sp. nov. (Ibidionin é descrita de Trinidad and Tobago e da Venezuela. Ommata (O. gallardi Peñaherrera & Tavakilian, 2004 (Rhinotragini, descrita originalmente da Guiana Francesa, é registrada para Trinidad and Tobago.

  16. New record and new species of Cerambycinae (Coleoptera, Cerambycidae) from Trinidad and Tobago and Venezuela

    OpenAIRE

    Martins, Ubirajara R.; Galileo, Maria Helena M.

    2010-01-01

    Novas espécies descritas de Trinidad and Tobago: Plocaederus dozieri sp. nov. (Cerambycini, Cerambycina), Anelaphus trinidadensis sp. nov. (Elaphidionini), Piezocera rufula sp. nov. (Piezocerini), Assycuera marcelae sp. nov. and Ceralocyna venusta sp. nov. (Trachyderini, Ancylocerina). Neocompsa pallida sp. nov. (Ibidionin) é descrita de Trinidad and Tobago e da Venezuela. Ommata (O.) gallardi Peñaherrera & Tavakilian, 2004 (Rhinotragini), descrita originalmente da Guiana Francesa, é registra...

  17. Chemopreventive activity of compounds extracted from Casearia sylvestris (Salicaceae) Sw against DNA damage induced by particulate matter emitted by sugarcane burning near Araraquara, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Prieto, A.M. [UNESP — Univ. Estadual Paulista, College of Pharmaceutical Sciences, Department of Clinical Analysis, Rua Expedicionários do Brasil, 1621, Araraquara (Brazil); Santos, A.G. [UNESP — Univ. Estadual Paulista, College of Pharmaceutical Sciences, Department of Natural Principles and Toxicology, Rodovia Araraquara-Jau, km 01, Araraquara (Brazil); Csipak, A.R.; Caliri, C.M.; Silva, I.C. [UNESP — Univ. Estadual Paulista, College of Pharmaceutical Sciences, Department of Clinical Analysis, Rua Expedicionários do Brasil, 1621, Araraquara (Brazil); Arbex, M.A. [UNIFESP — Federal University of São Paulo, Paulista College of Medicine, Department of Internal Medicine, Rua Pedro de Toledo, 720, São Paulo (Brazil); Silva, F.S.; Marchi, M.R.R. [UNESP — Univ. Estadual Paulista, Chemistry Institute, Department of Analytical Chemistry, Rua Francisco Degni, S/N, Araraquara (Brazil); Cavalheiro, A.J.; Silva, D.H.S.; Bolzani, V.S. [UNESP — Univ. Estadual Paulista, Chemistry Institute, Department of Organic Chemistry, Rua Francisco Degni, S/N, Araraquara (Brazil); Soares, C.P., E-mail: soarescp@hotmail.com [UNESP — Univ. Estadual Paulista, College of Pharmaceutical Sciences, Department of Clinical Analysis, Rua Expedicionários do Brasil, 1621, Araraquara (Brazil)

    2012-12-15

    Ethanolic extract of Casearia sylvestris is thought to be antimutagenic. In this study, we attempted to determine whether this extract and casearin X (a clerodane diterpene from C. sylvestris) are protective against the harmful effects of airborne pollutants from sugarcane burning. To that end, we used the Tradescantia micronucleus test in meiotic pollen cells of Tradescantia pallida, the micronucleus test in mouse bone marrow cells, and the comet assay in mouse blood cells. The mutagenic compound was total suspended particulate (TSP) from air. For the Tradescantia micronucleus test, T. pallida cuttings were treated with the extract at 0.13, 0.25, or 0.50 mg/ml. Subsequently, TSP was added at 0.3 mg/ml, and tetrads from the inflorescences were examined for micronuclei. For the micronucleus test in mouse bone marrow cells and the comet assay in mouse blood cells, Balb/c mice were treated for 15 days with the extract—3.9, 7.5, or 15.0 mg/kg body weight (BW)—or with casearin X—0.3, 0.25, or 1.2 mg/kg BW—after which they received TSP (3.75 mg/kg BW). In T. pallida and mouse bone marrow cells, the extract was antimutagenic at all concentrations tested. In mouse blood cells, the extract was antigenotoxic at all concentrations, whereas casearin X was not antimutagenic but was antigenotoxic at all concentrations. We conclude that C. sylvestris ethanolic extract and casearin X protect DNA from damage induced by airborne pollutants from sugarcane burning. -- Highlights: ► We assessed DNA protection of C. sylvestris ethanolic extract. ► We assessed DNA protection of casearin X. ► We used Tradescantia pallida micronucleus test as screening. ► We used comet assay and micronucleus test in mice. ► The compounds protected DNA against sugar cane burning pollutants.

  18. Environmental Assessment of Proposed Mixed-Use Business Park on an Enchanced Use Lease at Grand Forks Air Force Base, North Dakota

    Science.gov (United States)

    2014-04-01

    water from the local service providers; however, sanitary sewer services would be provided by GFAFB (Giltner 2013). Alternative 1 would include...utilizing the base include red-winged blackbird (Agelaius phoeniceus), mourning dove (Zenaida macroura), clay - colored sparrow (Spizella pallida), and...USAF 2006a). The glacial deposits are composed of silts, clays , sand, and gravel generally 225 ft thick, comprised of approximately 95 ft of clay

  19. Integrated assessment of chemical quality and genotoxicity of the water of the Luiz Rau Stream in the lower stretch of the Sinos River Basin, in South Brazil

    OpenAIRE

    Camila Tamires Petry; Gustavo Marques da Costa; Tatiane Benvenuti; Marco Antônio Siqueira Rodrigues; Annette Droste

    2016-01-01

    This study assessed the chemical quality and genotoxicity of the water of the Luiz Rau Stream in Novo Hamburgo (Rio Grande do Sul, Brazil) and investigated the relationship between the genetic damage observed in Tradescantia pallida var. purpurea and the chemical parameters analyzed. Water samplings were collected bimonthly from September 2012 to March 2013 from two sites, near the headspring (S1) and near the mouth (S2). Cuttings with flower buds were exposed to water from the sites and dist...

  20. Análisis numérico de las especies de Prosopis L. (Fabaceae de las costas de Perú y Ecuador

    Directory of Open Access Journals (Sweden)

    Alicia D. Burghardt

    2011-05-01

    Full Text Available Diferentes revisiones coinciden en señalar 2 o 3 especies de Prosopis para el sur de Ecuador y norte de Perú: P. juliflora (SW DC, P. pallida (Humb. et Bonpl. ex Willd. Kunth y P. affinis Sprengel. En el presente trabajo se informa del análisis cuantitativo de caracteres foliares de especímenes del genero Prosopis, recolectados a lo largo de la costa desde Arequipa (Perú a Manta (Ecuador. Los resultados señalan tres grupos bien definidos. Del análisis comparativo de los tipos y ejemplares de herbario de todas las especies y sinónimos citados para la zona de estudio surge que los taxones existentes son: P. pallida, P. limensis Bentham, ambos de amplia distribución, y P. chilensis (Molina Stuntz emend Burkart restringido al valle del río Camaná. Estos tres taxones se corresponden con los tres grupos obtenidos del análisis numérico. Debe señalarse la exclusión del área de P. juliflora y P. affinis. Se sugiere no utilizar las numerosas variedades señaladas para P. pallida.

  1. Assimilation and partitioning of prey nitrogen within two anthozoans and their endosymbiotic zooxanthellae

    Science.gov (United States)

    Piniak, G.A.; Lipschultz, F.; McClelland, J.

    2003-01-01

    The movement of nitrogen from zooplankton prey into the temperate scleractinian coral Oculina arbuscula and the anemone Aiptasia pallida was measured using 15N-labeled brine shrimp. The efficiency with which prey nitrogen was incorporated into cnidarian tissues was species-specific. O. arbuscula with a full complement of zooxanthellae had an assimilation efficiency of nearly 100%, compared to only 46% for corals containing few zooxanthellae. In A. pallida, symbiont density had no effect, and nitrogen assimilation was 23 to 29%. In both species, the host retained the bulk of the ingested label. Complete digestion was rapid (zooxanthellae, where it was rapidly converted into macromolecules. Individual amino acids in A. pallida tissues were highly labeled with 15N within 4 h and showed no subsequent enrichment with time; however, zooxanthellae amino acids became increasingly enriched over 30 h. Differences in 15N enrichment among amino acids were consistent with known synthesis and transformation pathways, but it was not possible to discriminate between host feeding and de novo synthesis.

  2. Multimodel Inference for the Prediction of Disease Symptoms and Yield Loss of Potato in a Two-Year Crop Rotation Experiment

    Directory of Open Access Journals (Sweden)

    Wim Van den Berg

    2012-01-01

    Full Text Available The second order Akaike information criterion was used for the assessment of 139 regression models for three responses of potato test crops: (a incidence of Spongospora subterranea on the harvested tubers, (b percentage of haulms infected with Verticillium dahliae, and (c tuber yield. Six variables that are likely related to the response variables were taken into consideration: soil infestations of the fungus Verticillium dahliae and of three nematode species (Globodera pallida, Trichodoridae, and Meloidogyne spp. and, furthermore, soil pH and water soluble phosphor (P. Interactions between V. dahliae and the three nematode species were included as well. Based on multimodelling, predictors are given a weight from which one may decide about the need to include them in a prediction of crop yield. The most important predictors were soil infestation levels of V. dahliae and G. pallida and soil pH. The outcome also showed that tubers suffered more from S. subterranea for higher soil pH values. Finally, yield reduction from the presence of V. dahliae was enhanced by the presence of higher densities of G. pallida.

  3. Evaluation of genotoxicity of liquid effluents from gas washing systems by means of bioassay Trad-MCN

    International Nuclear Information System (INIS)

    Machado, Alessandra Carla Fattori Ergesse; Alves, Edenise Segala

    2007-01-01

    In the gas washing systems the gaseous emissions from a facility are forced through an absorbing liquid preventing pollutants to be dispersed into the atmosphere. In the Centro Tecnologico da Marinha em Sao Paulo/Centro Experimental Aramar (CEA), the gas washing are used to control the emissions from the uranium enrichment facilities. Uranium. fluoride, ammonia and hydrogen fluoride are the main contaminants, all heavily toxic. Biological assays, using plants or other living organisms, have been used to assess genotoxic agents in the environment. Among the bioassays using plants, the Trad-MCN has been used extensively, as it allows the evaluation of liquid or gaseous contaminants. The species Tradescantia pallida (Rose) was exposed in a dynamic system to liquid effluents from CEA. A positive control was the exposure to formaldehyde 10% in water, known as a very toxic solution, and the negative control was the exposure to filtered air. The protocol established by Ma (1983) for hybrid clones and validated for the T. pallida by Guimaraes (2003) was used to perform the Trad-MCN assays. Only preparations containing early tetrads were scored. In that context, the present study objectifies to evaluate, by the Trad-MCN bioassay, the genotoxicity of the solution from the gas washing and, also, evaluate the efficiency of that system. The results obtained show that the T. pallida is a sensitive bioindicator for the pollutants tested and can be useful for in vitro environmental monitoring under controlled conditions. (author)

  4. A Plant-Feeding Nematode Indirectly Increases the Fitness of an Aphid

    Directory of Open Access Journals (Sweden)

    Grace A. Hoysted

    2017-11-01

    Full Text Available Plants suffer multiple, simultaneous assaults from above and below ground. In the laboratory, pests and/or pathogen attack are commonly studied on an individual basis. The molecular response of the plant to attack from multiple organisms and the interaction of different defense pathways is unclear. The inducible systemic responses of the potato (Solanum tuberosum L. host plant were analyzed to characterize the plant-mediated indirect interactions between a sedentary, endoparasitic nematode (Globodera pallida, and a phloem-sucking herbivore (Myzus persicae. The reproductive success of M. persicae was greater on potato plants pre-infected with G. pallida compared to control plants. Salicylic acid (SA increased systemically in the leaves of potato plants following nematode and aphid infection singly with a corresponding increase in expression of SA-mediated marker genes. An increase in jasmonic acid associated with aphid infection was suppressed when plants were co-infected with nematodes. Our data suggests a positive, asymmetric interaction between a sedentary endoparasitic nematode and a sap-sucking insect. The systemic response of the potato plant following infection with G. pallida indirectly influences the performance of M. persicae. This work reveals additional secondary benefits of controlling individual crop pests.

  5. Assessment of the relationship between total suspended particles and the response of two biological indicators transplanted to an urban area in central Argentina

    Science.gov (United States)

    Carreras, H. A.; Rodriguez, J. H.; González, C. M.; Wannaz, E. D.; Garcia Ferreyra, F.; Perez, C. A.; Pignata, M. L.

    Samples of the vascular plant Tradescantia pallida and the lichen Usnea amblyoclada were exposed from October 2004 to April 2005 in three sites with different local sources of air pollution in Córdoba city, Argentina. Simultaneous determinations of the ambient levels of total suspended particles were made for each site. Young inflorescenses of T. pallida were collected in November, February and April and the frequency of micronuclei was determined on early tetrads of pollen mother cells. Physiological parameters and the elemental composition of lichen thalli were measured from samples exposed and replaced every month. Significant differences among sampling sites were observed in the frequency of micronuclei measured in T. pallida as well as in many physiological parameters and elements accumulated in lichen thalli. The mass of particulate material as well as the concentration of Ca, Mn, Cu, Zn and Sr was significantly different in different sampling sites, too. These results suggest that in situ biomonitoring using both higher plants and lichens may be of use to characterize air pollution in areas devoid of instrumental monitoring techniques or where it is necessary to explore the distribution of air contaminants at a microscale.

  6. Evaluation of genotoxicity of liquid effluents from gas washing systems by means of bioassay Trad-MCN

    Energy Technology Data Exchange (ETDEWEB)

    Machado, Alessandra Carla Fattori Ergesse [Centro Tecnologico da Marinha em Sao Paulo (CTMSP), SP (Brazil). Div. de Monitoracao Ambiental], E-mail: alessandra@ctmsp.mar.mil.br; Alves, Edenise Segala [Instituto de Botanica de Sao Paulo, SP (Brazil). Secao de Anatomia], E-mail: ealves@ibot.sp.gov.br

    2007-07-01

    In the gas washing systems the gaseous emissions from a facility are forced through an absorbing liquid preventing pollutants to be dispersed into the atmosphere. In the Centro Tecnologico da Marinha em Sao Paulo/Centro Experimental Aramar (CEA), the gas washing are used to control the emissions from the uranium enrichment facilities. Uranium. fluoride, ammonia and hydrogen fluoride are the main contaminants, all heavily toxic. Biological assays, using plants or other living organisms, have been used to assess genotoxic agents in the environment. Among the bioassays using plants, the Trad-MCN has been used extensively, as it allows the evaluation of liquid or gaseous contaminants. The species Tradescantia pallida (Rose) was exposed in a dynamic system to liquid effluents from CEA. A positive control was the exposure to formaldehyde 10% in water, known as a very toxic solution, and the negative control was the exposure to filtered air. The protocol established by Ma (1983) for hybrid clones and validated for the T. pallida by Guimaraes (2003) was used to perform the Trad-MCN assays. Only preparations containing early tetrads were scored. In that context, the present study objectifies to evaluate, by the Trad-MCN bioassay, the genotoxicity of the solution from the gas washing and, also, evaluate the efficiency of that system. The results obtained show that the T. pallida is a sensitive bioindicator for the pollutants tested and can be useful for in vitro environmental monitoring under controlled conditions. (author)

  7. Efeito de extratos aquosos de plantas na oviposição da traça-das-crucíferas, em couve Effect of plants aqueous extracts on oviposition of the diamondback, in kale

    Directory of Open Access Journals (Sweden)

    Cesar Augusto Manfré Medeiros

    2005-01-01

    Full Text Available Avaliou-se o efeito de extratos aquosos de Achillea millefolium L. (folhas, Azadirachta indica A. Juss. (folhas, Bidens pilosa L. (folhas, frutos e ramos, Bougainvillea glabra Choisy (folhas, Chenopodium ambrosioides L. (folhas, frutos e ramos, Datura suaveolens Humb & Bonpl. ex. Willd (folhas, Enterolobium contortisilliquum (Vell. Morong (frutos, Mentha crispa L. (folhas e ramos, Nicotiana tabacum L. (folhas, Piper nigrum L. (folhas, Plumbago capensis Thunb. (folhas e ramos, Pothomorphe umbellata L. (folhas, Sapindus saponaria L. (folhas, S. saponaria (frutos, Solanum cernuum Vell. (folhas, Stryphnodendron adstringens (Mart Coville (casca, Symphytum officinale L. (folhas, Trichilia catigua A. Juss. (folhas, T. catigua (ramos, Trichilia pallida Sw. (folhas e T. pallida (ramos, em relação à preferência para oviposição de Plutella xylostella. Discos de folhas de couve (Brassica oleracea var. acephala cultivar Georgia foram imersos em cada extrato à concentração de 10% (massa/volume por um minuto. Em seguida, foram divididos em quatro partes iguais e duas partes foram colocadas alternadamente com outras duas partes tratadas com água destilada, em uma gaiola. A contagem dos ovos foi feita após 24 horas. Os extratos apresentaram efeito deterrente na oviposição da praga, com exceção do extrato de S. adstringens, que não diferiu da testemunha, tratada apenas com água destilada. Os extratos de E. contortisilliquum, S. saponaria (frutos e T. pallida (folhas foram os mais eficientes, apresentando 100% de deterrência.The effect of aqueous extracts from Achillea millefolium L. (leaves, Azadirachta indica A. Juss. (leaves, Bidens pilosa L. (leaves, fruits e branches, Bougainvillea glabra Choisy (leaves, Chenopodium ambrosioides L. (leaves, fruits e branches, Datura suaveolens Humb & Bonpl. ex. Willd (leaves, Enterolobium contortisilliquum (Vell. Morong (fruits, Mentha crispa L. (leaves e branches, Nicotiana tabacum L. (leaves, Piper nigrum

  8. Urban influence on the water quality of the Uberaba River basin: an ecotoxicological assessment

    Directory of Open Access Journals (Sweden)

    Ana Luisa Curado

    2018-03-01

    Full Text Available Ecotoxicological tests applied to Tradescantia pallida, Allium cepa and Lactuca sativa were used to assess the quality of the Uberaba River basin under urban area influence. Water samples were collected at eight different points during the dry season. The samples were assessed using the following toxicity indicators: micronuclei percentage in T. pallida pollen grains (TRAD-MN, seed germination, root growth, mitotic index (MI and micronuclei in A. cepa root-cells, and seed germination and root growth in L. sativa. Water physicochemical parameters such as temperature, dissolved oxygen (DO, pH and electric conductivity were assessed in situ. The three plant species were efficient bio-indicators, since they presented good cost-benefit and fast and easily interpreted results, thus completing the physicochemical parameters. There was strong correlation between seed germination and root growth among the ecotoxicological parameters assessed in L. sativa and A. cepa. The micronuclei percentage in T. pallida and the MI in A. cepa presented strong correlation with water electric conductivity and moderate and negative correlation with DO. Water electric conductivity ranged from 75 to 438 µS.cm-1; and the DO concentrations ranged from 0.5 to 6.9 mg.L-1. The importance of pollution control measures in the Uberaba River basin stands out. From the supply-water capture point, the basin is strongly affected by pollution, mainly in the tributaries that cross the city. It presents a short, or almost absent, riparian forest line, residues on the river banks, and it is impacted by discharges of untreated sewage, among other anthropic actions.

  9. A metagenetic approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual.

    Science.gov (United States)

    Eves-van den Akker, Sebastian; Lilley, Catherine J; Reid, Alex; Pickup, Jon; Anderson, Eric; Cock, Peter J A; Blaxter, Mark; Urwin, Peter E; Jones, John T; Blok, Vivian C

    2015-12-01

    Distinct populations of the potato cyst nematode (PCN) Globodera pallida exist in the UK that differ in their ability to overcome various sources of resistance. An efficient method for distinguishing between populations would enable pathogen-informed cultivar choice in the field. Science and Advice for Scottish Agriculture (SASA) annually undertake national DNA diagnostic tests to determine the presence of PCN in potato seed and ware land by extracting DNA from soil floats. These DNA samples provide a unique resource for monitoring the distribution of PCN and further interrogation of the diversity within species. We identify a region of mitochondrial DNA descriptive of three main groups of G. pallida present in the UK and adopt a metagenetic approach to the sequencing and analysis of all SASA samples simultaneously. Using this approach, we describe the distribution of G. pallida mitotypes across Scotland with field-scale resolution. Most fields contain a single mitotype, one-fifth contain a mix of mitotypes, and less than 3% contain all three mitotypes. Within mixed fields, we were able to quantify the relative abundance of each mitotype across an order of magnitude. Local areas within mixed fields are dominated by certain mitotypes and indicate towards a complex underlying 'pathoscape'. Finally, we assess mitotype distribution at the level of the individual cyst and provide evidence of 'hybrids'. This study provides a method for accurate, quantitative and high-throughput typing of up to one thousand fields simultaneously, while revealing novel insights into the national genetic variability of an economically important plant parasite. © 2015 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

  10. Identification of virus and nematode resistance genes in the Chilota Potato Genebank of the Universidad Austral de Chile

    Directory of Open Access Journals (Sweden)

    Marlon López

    2015-09-01

    Full Text Available Potato Genebank of the Universidad Austral de Chile (UACh is an important gene bank in Chile. The accessions collected all over the country possess high genetic diversity, present interesting agronomic and cooking traits, and show resistance to biotic and abiotic stress. A particularly interesting subgroup of the gene bank includes the accessions collected in the South of Chile, the Chilota Potato Genebank. The focus of this study is the identification of virus and nematode resistant genes in potatoes (Solatium tuberosum L., using the RYSC3 and YES3-3B molecular markers. The Potato virus Y(PVY resistance genes Ry adg and Ry sto were identified. Furthermore, the CP60 marker was used to assess the Rx resistance gene that confers resistance to Potato virus X (PVX. In addition, the HC and GRO1-4 markers were utilized to identify the GpaVvrn_QTL and Gro1-4, resistance genes of Globodera pallida and Globodera rostochiensis, respectively. Both G. pallida and G. rostochiensis are Potato Cyst Nematodes (PCN. The plant material used in this study included leaves from 271 accessions of the gene bank. These samples were collected in the field where natural pathogen pressure of potential viruses and diseases exists. ELISA assays were run for field detection of PVY and PVX. However, there have been no previous reports of nematode presence in the plant material. The results herein presented indicate presence of virus and nematode resistance genes in accessions of the Chilota Potato Genebank. In terms of virus resistance, 99 accessions out of the 271 tested possess the Ry adg resistance gene and 17 accessions of these 271 tested have the Ry sto resistance gene. Also, 10 accessions showed positive amplification of the Rxl resistant gene marker. As to nematode resistance, 99 accessions have possible resistance to G. pallida and 54 accessions show potential resistance to G. rostochiensis as detected using the available molecular markers.

  11. Comparing seeds germination of some local plant species on two hydroseeding mulches for post mining revegetation

    Directory of Open Access Journals (Sweden)

    M F Anshari

    2018-01-01

    Full Text Available The aims of this study were to determine seed germination rate of some local plant species in two hydroseeding mulches containing different tackifier concentration, as well as to determine the optimal hydroseeding mulch media composition for germinating seeds. This study used seeds of 13 local plant species: two species of Cyperaceae (Cyperus brevifolius, C. javanicus, five species of Leguminosae (Cajanus cajan, Crotalaria pallida, Sesbania grandiflora, S. sesban, Tephrosia purpurea, and six species of Poaceae (Eleusine indica, Paspalum conjugatum, Sorghum timorense, S. bicolor, Sporobolus indicus, Themeda arundinaceae. Two hydroseeding mulch media with different tackifier composition were mixed with seeds of each species and then sowed in pots. Each treatment was repeated three times. Moistened cotton wool was used as control and comparative media for observing seed viability. Seed germination in mulch media was observed during 13 days. The results showed that only 8 of 13 species could be germinated: S. indicus, S. timorense, T. arundinaceae, C. cajan, C. pallida, S. grandiflora, S. sesban, and T. purpurea. The highest germination rate was shown by S. sesban (67% in M2 medium and the lowest one was shown by T. arundinaceae (2% in both media. The fastest germination time was recorded for C. pallida and S. sesban seeds that germinated in 2 days after sowing (DAS in both media, while S. timorense and T. arundinaceae seeds showed the lowest ones in 11 DAS. The fluid M1 medium was optimal for seeds germination of S. sesban (50% and S. grandiflora (35%, while the thicker M2 medium was optimal for seeds germination of S. sesban (67% and S. timorense (50% in 13 DAS. The maximum germination rate was generally reached in 11 DAS.

  12. Determination of trace elements in lichen samples by instrumental neutron activation analysis

    International Nuclear Information System (INIS)

    Saiki, Mitiko; Horimoto, Lidia K.; Vasconcellos, Marina B.A.; Marcelli, Marcelo P.; Sumita, Nairo M.; Saldiva, Paulo H.N.

    2001-01-01

    Samples of Canoparmelia texana lichen collected in different sites of Sao Paulo and Parana States, Brazil, were analysed by neutron activation analysis in order to obtain preliminary information on the air quality in these regions and also to select a region of interest for biomonitoring studies. Also Tadescantia pallida plant has been analysed in order to study the viability of using this specimen in environmental pollution monitoring. Lichens samples were collected from tree barks which were also collected to investigate the contribution of substrate derived elements to elements present in lichens. Young and old leaves of T. pallida were collected separately in order to study the leaf age effects on their elemental levels. The samples were cleaned, washed with distilled water, dried and ground for the analyses. Samples and standards were irradiated at the IEA-Rlm nuclear reactor for short and long periods and concentrations of the elements Al, As, Ca, Cd, Cl, Co, Cr, Cs, Fe, Hf, Mg, Mn, Rb, Sb, Sc, D, Th, U, V Zn and lanthanides were determined. Preliminary results obtained for T. texana lichen indicated that three sites (Ibiuna, Botanical Garden and Parque de Vila Velha) present low concentrations of the most elements analysed. Therefore lichens from these regions could be analysed to establish baseline levels of elements for monitoring purposes. Samples collected in open areas presented high concentrations of some elements probably due to the accumulation of elements originating from soil and from heavy vehicular traffic. Elemental concentrations obtained in outer barks were similar or smaller than those results obtained for lichens. Results obtained for T. pallida indicated that concentrations of elements in old leaves of this plant are of the same magnitude or slightly higher than those presented in young ones. (author)

  13. Antimicrobial, Anthelmintic, and Antiviral Activity of Plants Traditionally Used for Treating Infectious Disease in the Similipal Biosphere Reserve, Odisha, India.

    Science.gov (United States)

    Panda, Sujogya K; Padhi, Laxmipriya; Leyssen, Pieter; Liu, Maoxuan; Neyts, Johan; Luyten, Walter

    2017-01-01

    In the present study, we tested in vitro different parts of 35 plants used by tribals of the Similipal Biosphere Reserve (SBR, Mayurbhanj district, India) for the management of infections. From each plant, three extracts were prepared with different solvents (water, ethanol, and acetone) and tested for antimicrobial ( E. coli, S. aureus, C. albicans ); anthelmintic ( C. elegans ); and antiviral ( enterovirus 71 ) bioactivity. In total, 35 plant species belonging to 21 families were recorded from tribes of the SBR and periphery. Of the 35 plants, eight plants (23%) showed broad-spectrum in vitro antimicrobial activity (inhibiting all three test strains), while 12 (34%) exhibited narrow spectrum activity against individual pathogens (seven as anti-staphylococcal and five as anti-candidal). Plants such as Alangium salviifolium, Antidesma bunius, Bauhinia racemosa, Careya arborea, Caseria graveolens, Cleistanthus patulus, Colebrookea oppositifolia, Crotalaria pallida, Croton roxburghii, Holarrhena pubescens, Hypericum gaitii, Macaranga peltata, Protium serratum, Rubus ellipticus , and Suregada multiflora showed strong antibacterial effects, whilst Alstonia scholaris, Butea monosperma, C. arborea, C. pallida, Diospyros malbarica, Gmelina arborea, H. pubescens, M. peltata, P. serratum, Pterospermum acerifolium, R. ellipticus , and S. multiflora demonstrated strong antifungal activity. Plants such as A. salviifolium, A. bunius, Aporosa octandra, Barringtonia acutangula, C. graveolens, C. pallida, C. patulus, G. arborea, H. pubescens, H. gaitii, Lannea coromandelica, M. peltata, Melastoma malabathricum, Millettia extensa, Nyctanthes arbor-tristis, P. serratum, P. acerifolium, R. ellipticus, S. multiflora, Symplocos cochinchinensis, Ventilago maderaspatana , and Wrightia arborea inhibit survival of C. elegans and could be a potential source for anthelmintic activity. Additionally, plants such as A. bunius, C. graveolens, C. patulus, C. oppositifolia, H. gaitii, M. extensa

  14. Community impacts of Prosopis juliflora invasion: biogeographic and congeneric comparisons.

    Science.gov (United States)

    Kaur, Rajwant; Gonzáles, Wilfredo L; Llambi, Luis Daniel; Soriano, Pascual J; Callaway, Ragan M; Rout, Marnie E; Gallaher, Timothy J; Inderjit

    2012-01-01

    We coordinated biogeographical comparisons of the impacts of an exotic invasive tree in its native and non-native ranges with a congeneric comparison in the non-native range. Prosopis juliflora is taxonomically complicated and with P. pallida forms the P. juliflora complex. Thus we sampled P. juliflora in its native Venezuela, and also located two field sites in Peru, the native range of Prosopis pallida. Canopies of Prosopis juliflora, a native of the New World but an invader in many other regions, had facilitative effects on the diversity of other species in its native Venezuela, and P. pallida had both negative and positive effects depending on the year, (overall neutral effects) in its native Peru. However, in India and Hawaii, USA, where P. juliflora is an aggressive invader, canopy effects were consistently and strongly negative on species richness. Prosopis cineraria, a native to India, had much weaker effects on species richness in India than P. juliflora. We carried out multiple congeneric comparisons between P. juliflora and P. cineraria, and found that soil from the rhizosphere of P. juliflora had higher extractable phosphorus, soluble salts and total phenolics than P. cineraria rhizosphere soils. Experimentally applied P. juliflora litter caused far greater mortality of native Indian species than litter from P. cineraria. Prosopis juliflora leaf leachate had neutral to negative effects on root growth of three common crop species of north-west India whereas P. cineraria leaf leachate had positive effects. Prosopis juliflora leaf leachate also had higher concentrations of total phenolics and L-tryptophan than P. cineraria, suggesting a potential allelopathic mechanism for the congeneric differences. Our results also suggest the possibility of regional evolutionary trajectories among competitors and that recent mixing of species from different trajectories has the potential to disrupt evolved interactions among native species.

  15. FRITZ SCHAUDINN, SU ÉPOCA Y SU RELACIÓN CON AMIBIASIS, MALARIA Y SÍFILIS | FRITZ SCHAUDINN, YOUR TIME AND ITS RELATIONSHIP WITH AMOEBIASIS, MALARIA AND SYPHILIS

    Directory of Open Access Journals (Sweden)

    Luis Eduardo Traviezo Valles

    2014-02-01

    Full Text Available A brief history of Fritz Schaudinn, the time of his birth (1871 and his death (1906 is described, highlighting their achievements in Parasitology and Microbiology, such as the description first, Entamoeba histolytica 1903, the Spirochaeta pallida (Treponema pallidum 1905 , confirmation of the life cycle of hookworms, the penetration of larvae through the skin, (1895, designing a solution for fixing base mercuric chloride for protozoa and the introduction of terms such as schizogony, schizont, merozoite, macro and microgametocyte, sporogony, ookinete, sporozoite, oociste and would include in the cycle of Plasmodium of the malaria.

  16. L'escalfament global, El Niño i el desert

    OpenAIRE

    Claramunt López, Bernat

    2006-01-01

    Científics de la UAB han participat en un projecte de cooperació internacional amb l'objectiu d'estudiar el fenomen El Niño i la seva incidència en la vegetació. Observant la relació entre el desenvolupament de dues espècies (Prosopis pallida i Prosopis chilensis) i els cicles de El Niño (que té una intensitat molt variable), han arribat a la conclusió que es podria utilitzar l'augment de les precipitacions per recuperar zones semiàrides.

  17. A second record of Selenochlamys (Stylommatophora: Trigonochlamydidae from Crimea

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    Ilya Turbanov

    2015-01-01

    Full Text Available A live specimen of Selenochlamys was collected in a cave on the Ai-Petri massif of the Crimean Mountains in 2014. It is described and compared with the first Crimean specimen that was collected in 1989 on the Babugan massif. Both specimens are juvenile. Both seem to be more similar to S. ysbryda than S. pallida, and are considered as S. cf. ysbryda. Distribution and habitat preferences in Crimea are discussed. A second finding of Selenochlamys in Crimea suggests the first was not accidental and this slug is likely to be native in Crimea.

  18. A method for estimating the contribution of seed potatoes, machinery and soil tare in field infestations with potato cyst nematodes on a national scale.

    Science.gov (United States)

    Goeminne, M; Demeulemeester, K; Viaene, N

    2011-01-01

    In order to make a cost benefit analysis for the management of the potato cyst nematodes Globodera rostochiensis and G. pallida, we developed a method to estimate the relative importance of three basic distribution channels of potato cyst nematodes: seed potatoes, machinery and soil tare. The baseline is determined by the area planted with potatoes, the area infested with potato cysts, the proportion of resistant potato cultivars and the distribution of cysts trough different channels. This quantification forms a basis for the evaluation of the effects of different control measures for potato cyst nematode on a national scale. The method can be useful as an example for application in other countries.

  19. Morphological and molecular identification of potato cyst nematode populations in Serbia

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    Oro Violeta

    2010-01-01

    Full Text Available Quarantine species such as potato cyst nematodes Globodera rostochiensis and G. pallida are present in Serbia since 1999 and 2005, respectively. These nematodes are sibling species and their morphological identification is complex due to their morphometric overlap. The cysts from the localities of Kladnica, Šanac, Gojna Gora and Milatovići were grown on susceptible potato varieties and their morphological differences have been discussed. To avoid ambiguities in species morphological designation a duplex PCR method was chosen for a rapid and accurate species identification. The whole procedure, from DNA extraction to DNA isolation, can be performed in a single day. .

  20. Taxonomic Diversity of Fungi Associated with Some PCN Populations from Serbia

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    Violeta Oro

    2012-01-01

    Full Text Available Increased content of pesticides in food chain resulted in using microorganisms asagents of biological control. The potato cyst nematodes (PCN - Globodera pallida and G.rostochiensis belong to the group of the most important parasites - the quarantine organisms.The external and internal area of a cyst harbor numerous fungal and bacterial species.The aim of this study was to identify antagonistic fungi associated with some PCN populationsfrom Serbia. Fungal antagonists of potato cyst nematodes have not been previouslyinvestigated in our country. The diversity of PCN fungal antagonists is not reflected only atthe species level but also at the level of higher taxonomic categories.

  1. Pantothenate kinase 2 mutation with classic pantothenate-kinase-associated neurodegeneration without 'eye-of-the-tiger' sign on MRI in a pair of siblings

    International Nuclear Information System (INIS)

    Zolkipli, Zarazuela; Surtees, Robert; Dahmoush, Hisham; Saunders, Dawn E.; Kling Chong, W.K.

    2006-01-01

    It has been postulated that all patients with pantothenate kinase 2 (PANK2) mutations causing pantothenate-kinase-associated neurodegeneration (PKAN) are associated with the 'eye-of-the-tiger' sign on MRI. We report a pair of siblings who presented with dystonia and who have been found to be homozygous for 104C>A, S35X mutation, confirming the diagnosis of PKAN. They do not have the typical iron deposition in the globi pallida or substantia nigra on MR imaging. (orig.)

  2. Nuevas citas de ácaros oribátidos (Acari: Oribatida para la Argentina

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    Ana SALAZAR MARTÍNEZ

    2006-01-01

    Full Text Available En la presente nota se citan, por primera vez para la Argentina, cuatro especies de ácaros oribátidos: Epilohmannia pallida americana Balogh & Mahunka, 1981, Protoribates (Triangius praeoccupatus (Pérez-Iñigo & Baggio, 1980, Scheloribates curvialatus Hammer, 1961 y Galumna innexa Pérez-Iñigo & Baggio, 1986. Los ejemplares fueron hallados en muestras de suelo recolectadas en La Plata, Provincia de Buenos Aires (34º 54’S, 57º 55 ́ W, en ambientes sometidos a intervención antrópica: bosques urbanos, huertas orgánicas y pastizales.

  3. Morphological features of leaves in the genus Echinacea Moench under introduction

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    Valentyna O. Menshova

    2015-05-01

    Full Text Available The comparative morphological characteristics of leaves of the genus Echinacea representatives (E. pallida (Nutt. Nutt and E. tennesseensis (Beadle Small introduced in the O.V. Fomin Botanical Garden are given. The established morphological features allow determining the adaptive capacities of species of the genus Echinacea ex situ. Despite of taxonomical belonging, the leaves of basal formation are most developed. Studied features could be applied during the implementation of these plants in pharmaceutical industry. Also these features could be useful during further investigations of adaptive possibilities of Echinacea species in ex situ conditions.

  4. Há 100 anos, a descoberta do Treponema pallidum A hundred years ago, the discovery of Treponema pallidum

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    Elemir Macedo de Souza

    2005-10-01

    Full Text Available A descoberta do Treponema pallidum por Schaudinn & Hoffmann em 3 de março de 1905 foi influenciada pela comunicação de Siegel, sobre a descoberta do agente etiológico da sífilis. Encarada com ceticismo, a comunicação acarretou novas investigações, conduzidas pelo zoologista Schaudinn e pelo dermatologista Hoffmann -primeiros observadores do agente da sífilis, denominado Spirochaeta pallida. A descoberta foi o passo inicial para o desenvolvimento dos procedimentos diagnósticos e terapêuticos nos anos subseqüentes.The discovery of Treponema pallidum by Schaudinn & Hoffmann, on March 3rd 1905, was influenced by Siegels' communication on the finding of the etiological agent of syphilis. John Siegel, working at the Institut of Zoology, University of Berlin, claimed to have found a flagellate protozoon in syphilitic lesions. Because of the skepticism it was received with, this communcation yielded further investigation, conducted by zoologist Schaudinn and dermatologist Hoffmann. They were the first investigators to find the etiological agent of syphilis, described under the name of Spirochaeta pallida. The discovery of Treponema pallidum on March 3rd 1905 was the first step towards the development of diagnostic and therapeutic procedures in subsequent years.

  5. Nuevas citas de ácaros oribátidos (Acari: Oribatida para la Argentina New records of oribatids (Acari: Oribatida for Argentina

    Directory of Open Access Journals (Sweden)

    Ana Salazar Martínez

    2006-12-01

    Full Text Available En la presente nota se citan, por primera vez para la Argentina , cuatro especies de ácaros oribátidos: Epilohmannia pallida americana Balogh & Mahunka, 1981, Protoribates (Triangius praeoccupatus (Pérez-Iñigo & Baggio, 1980, Scheloribates curvialatus Hammer, 1961 y Galumna innexa Pérez-Iñigo & Baggio, 1986. Los ejemplares fueron hallados en muestras de suelo recolectadas en La Plata , Provincia de Buenos Aires (34º 54'S, 57º 55´ W, en ambientes sometidos a intervención antrópica: bosques urbanos, huertas orgánicas y pastizales.Four species of oribatid mites are recorded from Argentina for the first time: Epilohmannia pallida americana Balogh & Mahunka, 1981, Protoribates (Triangius praeoccupatus (Pérez-Iñigo & Baggio, 1980, Scheloribates curvialatus Hammer, 1961 and Galumna innexa Pérez-Iñigo & Baggio, 1986. The specimens were collected in soil samples in La Plata , Buenos Aires Province (34º 54' S, 57º 55´ W in sites exposed to different degrees of human intervention: urban forest, organic orchards and pastures.

  6. Floristic composition of Peruvian plantcutter (Phytotoma raimondii habitat

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    Mónica Romo

    2013-06-01

    Full Text Available Through of the analysis of the floristic composition of 16 plots of half an hectare in 12 sites where the Phyto-toma raimondii, Peruvian plantcutter exists, we found that richness and diversity of plants are not related to the abundance of the bird, neither the abundance of any of the 7 species used as food or for nestting, except the algarrobo (Prosopis pallida. The most frequent species in the 12 sites were algarroboProsopis pallida(92% of the sites, vichayoCapparis ovalifolia(67%, canutilloGrabowskia boerhaviifolia(58%, sapoteCapparis scabrida(58% and realengoMaytenus octogona(25%. Besides algarrobo, canutillo seem to be a key species because in the plots where only three species occurred, those two were present. In the plots where canutillo was present, realengo did not more than expected statistically. It is alarming the decrease and few places or habitats for the occurrence and reproduction of the Peruvian plantcutter, a species considered in danger of extinction.

  7. Virulence assessment of Portuguese isolates of potato cyst nematodes (Globodera spp.

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    Maria José M. DA CUNHA

    2012-05-01

    Full Text Available Identification of species and virulence groups of potato cyst nematodes (PCN, Globodera pallida and G. rostochiensis, present in field populations is important in the control of these nematodes by means of resistant cultivars. In order to characterize the virulence of Globodera spp. isolates from Portugal, 43 G. rostochiensis and three G. pallida isolates were evaluated by measuring their multiplication rates on a susceptible potato cultivar and five differential potato genotypes in a growth chamber pot experiment. Principal Component Analysis and Hierarchical Cluster Analysis showed that the reproduction rates were different in terms of both the numbers of eggs and the numbers of cysts produced. Portuguese isolates of PCN were more virulent on genotypes derived from Solanum vernei than on genotypes derived from other Solanum resistance sources, and there was a significant nematode isolate × host genotype interaction. The virulence bioassay clearly distinguished the two PCN species but failed to differentiate isolates into pathotypes. There was a wide and continuous range of virulence to the resistant genotypes, especially in G. rostochiensis isolates.

  8. Mineral content in four browse species from northeastern mexico

    International Nuclear Information System (INIS)

    Tilo, G.; Gomez, D.; Roque, G.; Lonano, R.; Lozano, R.

    2014-01-01

    The aim of the present study was to determine and compare macro (Ca, K, Mg, Na and P) and micro (Cu, Fe, Mn and Zn) nutrient foliar content in Acacia amentacea (DC.), Celtis pallida (Torr.), Forestiera angustifolia (Torr.) and Parkinsonia texana (A. Gray). Leaf samples were collected monthly from January throughout December 2009 in China, Linares and Los Ramones counties in the state of Nuevo Leon, Mexico. All nutrients were significantly different among sites, months and species; double and triple interactions were also significant. Among sites, samples from Los Ramones County showed the higher macronutrient content, followed by China and Linares. As for species, Celtis pallida showed the highest values while A. amentacea had the lowest macronutrient content. Micronutrient content showed the following decreasing order: China>Los Ramones>Linares. Parkinsonia texana was characteristically the most abundant in micronutrient content, while, A. amentacea was the poorest in this respect. Regardless of species, site or timing, Ca (total mean = 30 g kg-1), K (15; except A. amentacea), Mg (5.2; except A. amentacea), Na (1.9; only F. angustifolia), Fe (100 mg kg-1), Mn (51; only F. angustifolia) and Zn (35; except A. amentacea) were determined to be present in suitable amounts to meet nutritional requirements of range ruminants, while Na (1.9; except F. angustifolia), P (1.3 g kg-1) and Cu (6 mg kg-1) were marginally deficient throughout the year. (author)

  9. Can environmental variation affect seedling survival of plants in northeastern Mexico?

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    García Jaime F.

    2011-01-01

    Full Text Available The effects of global warming increase the frequency and intensity of many climate events such as rainfall. We evaluated the effects of environmental conditions on early stage seedling survival of the native thorn scrub species Caesalpinia mexicana A. Gray, Celtis pallida Torr., Cordia boissieri A. DC., and Ebenopsis ebano (Berland. Barneby and J.W. Grimes, during the summer of 2009 and 2010. The experimental design had two factors, two levels of rainfall and three microhabitats of thorn scrub: (i open interspace, (ii thorn scrub edge and (iii under the canopy of dense thorn scrub. In dense thorn scrub, seedling survival was higher for Caesalpinia mexicana and Celtis pallida, and for Cordia boissieri and Ebenopsis ebano seedling survival was higher in dense thorn scrub and thorn scrub edge. The effect of rainfall on seedling survival depended on the year. Rainfall in 2010 and dense thorn scrub increased seedling survival of native species. For survival, the limiting factors of microhabitats appear to change across the years. Besides rainfall events, biological aspects like competition and mycorrhiza effects would need to be considered in models of plant establishment.

  10. Use of a bioindicator system in the study of the mutagenetical effects in the neighborhoods of deposits of radioactive waste

    Energy Technology Data Exchange (ETDEWEB)

    Santos Leal, Teresa Cristina dos [Post-graduation in Environmental Science (PGCA), UFF, Niteroi (Brazil)], E-mail: teresa@tcleal.eng.br; Crispim, Verginia R. [Nuclear Engineering Program/COPPE/UFRJ, Rio de Janeiro (Brazil); Frota, Marcos [Laboratory of Radiobiology and Radiometry (LARARA), Department of General Biology, UFF, Niteroi (Brazil); Kelecom, Alphonse [Post-graduation in Environmental Science (PGCA), UFF, Niteroi (Brazil); Laboratory of Radiobiology and Radiometry (LARARA), Department of General Biology, UFF, Niteroi (Brazil); Silva, Ademir Xavier da [Nuclear Engineering Program/COPPE/UFRJ, Rio de Janeiro (Brazil)

    2008-04-15

    The purpose of the research described in this paper was to analyze the biological mutational effects caused by low doses of ionizing radiation on biological samples placed nearby and around deposits of radioactive waste, as a way of monitoring the environment close to them. In order to do this, the plant Tradescantia pallida was chosen, and through micronuclei tests the sensitivity of the dose/response to bio-monitoring could be observed. The plants were exposed for a period of 24 h in previously chosen sites around Brazil, within the proximity of nuclear waste deposits. In each location, three points were chosen for bio-monitoring. The results obtained at these locations showed a small increment in the frequency of micronuclei per cell of the biosensor. From these data, a scale of mutagenesis effects due to low-dose radiation was built up. T. pallida is a good alternative for environmental bio-monitoring in tropical climates, as it is an excellent alternative tool in the studies of the effects of ionizing radiation on the environment.

  11. Revisión del género de mariposas Forsterinaria Gray, 1973 (Lepidoptera: Nymphalidae, Satyrinae

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    Carlos Peña

    2013-05-01

    Full Text Available Se presenta una revisión taxonómica de las mariposas satírinas neotropicales incluidas en el género Forsterinaria Gray, 1973, comprendiendo una discusión de la clasificación y distribución geográfica de sus especies componentes, ilustraciones de los adultos de todos los taxones y de sus genitalias masculinas, así como descripciones de 12 especies y dos subespecies nuevas: Forsterinaria antje sp. n., F. coipa sp. n., F. enjuerma sp. n., F. falcata sp. n., F. guaniloi sp. n., F. itatiaia sp. n., F. pallida sp. n., F. pallida aurita ssp. n., F. pichita sp. n., F. pilosa sp. n., F. punctata sp. n., F. pyrczi sp. n., F. rotunda sp. n. y F. rustica glendita ssp. n. Euptychia stelligera Butler y E. fabiana Butler son considerados sinónimos (syn. n. de Forsterinaria quantius (Godart. Euptychia magdalena Hayward y E. pseudonecys Strand son considerados sinónimos (syn. n. de F. inornata (C. Felder & R. Felder y F. necys (Godart, respectivamente. Se designa lectotipos para 14 taxones nominales. Se reconoce un total de 23 especies. Se ofrece una clave para la identificación de todos los taxones.

  12. Stomatal responses to flooding of the intercellular air spaces suggest a vapor-phase signal between the mesophyll and the guard cells.

    Science.gov (United States)

    Sibbernsen, Erik; Mott, Keith A

    2010-07-01

    Flooding the intercellular air spaces of leaves with water was shown to cause rapid closure of stomata in Tradescantia pallida, Lactuca serriola, Helianthus annuus, and Oenothera caespitosa. The response occurred when water was injected into the intercellular spaces, vacuum infiltrated into the intercellular spaces, or forced into the intercellular spaces by pressurizing the xylem. Injecting 50 mm KCl or silicone oil into the intercellular spaces also caused stomata to close, but the response was slower than with distilled water. Epidermis-mesophyll grafts for T. pallida were created by placing the epidermis of one leaf onto the exposed mesophyll of another leaf. Stomata in these grafts opened under light but closed rapidly when water was allowed to wick between epidermis and the mesophyll. When epidermis-mesophyll grafts were constructed with a thin hydrophobic filter between the mesophyll and epidermis stomata responded normally to light and CO(2). These data, when taken together, suggest that the effect of water on stomata is caused partly by dilution of K(+) in the guard cell and partly by the existence of a vapor-phase signal that originates in the mesophyll and causes stomata to open in the light.

  13. Stomatal Responses to Flooding of the Intercellular Air Spaces Suggest a Vapor-Phase Signal Between the Mesophyll and the Guard Cells1[OA

    Science.gov (United States)

    Sibbernsen, Erik; Mott, Keith A.

    2010-01-01

    Flooding the intercellular air spaces of leaves with water was shown to cause rapid closure of stomata in Tradescantia pallida, Lactuca serriola, Helianthus annuus, and Oenothera caespitosa. The response occurred when water was injected into the intercellular spaces, vacuum infiltrated into the intercellular spaces, or forced into the intercellular spaces by pressurizing the xylem. Injecting 50 mm KCl or silicone oil into the intercellular spaces also caused stomata to close, but the response was slower than with distilled water. Epidermis-mesophyll grafts for T. pallida were created by placing the epidermis of one leaf onto the exposed mesophyll of another leaf. Stomata in these grafts opened under light but closed rapidly when water was allowed to wick between epidermis and the mesophyll. When epidermis-mesophyll grafts were constructed with a thin hydrophobic filter between the mesophyll and epidermis stomata responded normally to light and CO2. These data, when taken together, suggest that the effect of water on stomata is caused partly by dilution of K+ in the guard cell and partly by the existence of a vapor-phase signal that originates in the mesophyll and causes stomata to open in the light. PMID:20472750

  14. Revised description of the fine structure of in situ "zooxanthellae" genus Symbiodinium.

    Science.gov (United States)

    Wakefield, T S; Farmer, M A; Kempf, S C

    2000-08-01

    The fine structure of the symbiotic dinoflagellate genus Symbiodinium has been well described. All of the published descriptions are based on tissue that was fixed in standard aldehyde and osmium fixatives and dehydrated in an ethanol series before embedding. When the technique of freeze-substitution was used to fix tissue from Cassiopeia xamachana, Aiptasia pallida, and Phyllactis flosculifera and prepare it for embedding, thecal vesicles were revealed within the in situ symbionts of all three species. Although these structures have been identified in cultured symbionts, they have never been described in the in situ symbionts. A review of the literature has revealed several instances where thecal vesicles were either overlooked or identified incorrectly. Thus the formal description of the genus Symbiodinium, which describes the in situ symbionts, contains information that is based on artifact and should be revised. A revision of the genus is suggested, and the true nature of these structures and their significance in the symbiotic association are discussed.

  15. A northward colonisation of the Andes by the potato cyst nematode during geological times suggests multiple host-shifts from wild to cultivated potatoes.

    Science.gov (United States)

    Picard, Damien; Sempere, Thierry; Plantard, Olivier

    2007-02-01

    The cyst nematode Globodera pallida is a major pest of potato in South America where this specialist parasite is native. To investigate its phylogeography, we have genotyped individuals from 42 Peruvian populations using mitochondrial and nuclear molecular markers. A clear south-to-north phylogeographical pattern was revealed with five well-supported clades. The clade containing the southern populations is genetically more diverse and forms the most basal branch. The large divergence among cytochrome b haplotypes suggests that they diverged before human domestication of potato. As the nematodes studied have been sampled on cultivated potato, multiple host-shifts from wild to cultivated potatoes must have occurred independently in each clade. We hypothesise that this south-to-north pattern took place during the uplift of the Andes beginning 20 My ago and following the same direction. To our knowledge, this is the first study of a plant parasite sampled on cultivated plants revealing an ancient phylogeographical pattern.

  16. Molecular and phenotypic characterization of endophytic bacteria isolated from sulla nodules.

    Science.gov (United States)

    Beghalem, Hamida; Aliliche, Khadidja; Chriki, Ali; Landoulsi, Ahmed

    2017-10-01

    In the current study, bacterial diversity was investigated in root nodules of Sulla pallida and Sulla capitata. The isolates were analyzed on the basis of their phenotypic and molecular characteristics. The phylogenetic analysis based on 16S rRNA and housekeeping genes (recA and atpD) showed that the isolated bacteria related to Sinorhizobium, Neorhizobium, Phyllobacterium, Arthrobacter, Variovorax and Pseudomonas genera. This is the first report of Neorhizobium genus associated with Hedysarum genus. Phenotypically, all strains tolerate the elevated temperature of 40 °C, and salt stress at a concentration of 2%. In addition, the isolates failed to induce nodulation on their original host; and the symbiotic genes could not be amplified, suggesting that these strains are endophytic bacteria. Copyright © 2017 Elsevier Ltd. All rights reserved.

  17. Eficiência de produtos vegetais no controle da lagarta-do-cartucho-do-milho Spodoptera frugiperda (J.E.Smith, 1797 (Lepidoptera: Noctuidae Efficience of extracts of plantas in control of fall armyworm in corn Spodoptera frugiperda (J.E.Smith, 1797 (Lepidoptera: Noctuidae

    Directory of Open Access Journals (Sweden)

    Marcelo Souza Silva Oliveira

    2007-04-01

    Full Text Available O presente trabalho teve por objetivo avaliar a eficiência de produtos vegetais no controle de Spodoptera frugiperda (J.E.Smith, 1797 na cultura do milho. Os experimentos foram instalados, nos anos de 2002 e 2004, com a pulverização dos produtos vegetais em cinco tratamentos, e quatro repetições. No ano de 2002, os produtos testados foram: Azadirachta indica A. Juss. (extrato aquoso 2%, e óleo a 1%; Melia azedarach L. (extrato aquoso 2%; Quassia amara L. (extrato aquoso 2%; óleo de nim, Azadirachta indica 1 e 2%. No ano de 2004, os produtos testados foram: A. indica (extrato aquoso 5%, e óleo a 2%, M. azedarach (extrato aquoso 5%, Trichilia pallida Sw. (extrato aquoso 5%. As avaliações, porcentagem de infestação da lagarta-do-cartucho por parcela, foram efetuadas aos três, sete e dez dias após a pulverização dos extratos. Conclui-se que extratos aquosos das plantas A. indica 2%, T.pallida 5%, Q. amara 2% e M. azedarach 2% e 5% e óleo de A. indica 1% e 2% com adição de tenso ativo não iônico, não possuem eficiência necessária como único método de controle da largarta-do-cartucho S. frugiperda em condições de campo. Os produtos começam a afetar o desenvolvimento da lagarta após alguns dias da ingestão das folhas pulverizadas, observado na avaliação efetuada aos sete dias após a aplicação dos extratos.The objective of this work was to study the efficiency of vegetable pesticides in the control of Spodoptera frugiperda (J.E.Smith, 1797 in corn culture. The experiments were installed, in the years of 2002 and 2004, with the spraying of the vegetable products in five treatments, and four repetitions. In the year of 2002 the tested products were: Azadirachta indica A. Juss (aqueous extract 2%, and oil at 1%; Melia azedarach L. (aqueous extract 2%; Quassia amara L. (aqueous extract 2%; nim oil, Azadirachta indica 1 and 2%. In the year of 2004 the tested products were: A. indica (aqueous extract 5%, and oil at 2%, M

  18. Historia cultural del algarrobo, desde la cuenca del Mediterráneo hasta la Costa Norte de Perú

    Directory of Open Access Journals (Sweden)

    Elisa Cairati

    2013-11-01

    Full Text Available This work aims to analyze the cultural history of the botanical species generally indicated as 'carob three', through the correlation between the Mediterranean carob (Ceratonia siliqua and its South American relative (Prosopis pallida, affinis, chilensis o julinflora. Although the biological relationship between the two plants is thin, they share a combination of cultural and symbolic significances common to different communities in different geographical and cultural areas. In particular this paper, based on a field research in the Northern coast of Peru, will examine the symbolic characteristics of the South American carob three in the peculiar area of the Santuario Histórico Bosque de Pómac, in the region of Lambayeque.

  19. New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)1

    Science.gov (United States)

    Bessega, Cecilia F.; Pometti, Carolina L.; Miller, Joe T.; Watts, Richard; Saidman, Beatriz O.; Vilardi, Juan C.

    2013-01-01

    • Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. • Methods and Results: Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. • Conclusions: These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection. PMID:25202541

  20. New Microsatellite Loci for Prosopis alba and P. chilensis (Fabaceae

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    Cecilia F. Bessega

    2013-05-01

    Full Text Available Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. Methods and Results: Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. Conclusions: These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection.

  1. New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae).

    Science.gov (United States)

    Bessega, Cecilia F; Pometti, Carolina L; Miller, Joe T; Watts, Richard; Saidman, Beatriz O; Vilardi, Juan C

    2013-05-01

    As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. • Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. • These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection.

  2. Screening Prosopis (mesquite) for cold tolerance

    Energy Technology Data Exchange (ETDEWEB)

    Felker, P. (Texas AandI Univ., Kingsville); Clark, P.R.; Nash, P.; Osborn, J.F.; Cannell, G.H.

    1982-09-01

    Cold tolerance and biomass estimation of Prosopis species were examined under field conditions. Prosopis africana and P. pallida tolerated several minus 1.5/sup 0/C freezes but none survived a minus 5/sup 0/C freeze. P. alba, P. articulata, P. chilensis, P. nigra, and P. tamarugo tolerated several minus 5/sup 0/C freezes but not a 12-hour below 0/sup 0/C freeze. Most North American native species P. glandulosa var. glandulosa, P. glandulosa var. torreyana, and P. velutina tolerated the 12 hour freeze with only moderate damage. In general trees with greater productivity belonged to the most cold sensitive accessions but sufficient variability exists to substantially improve Prosopis biomass production on the coldest areas where it now naturally occurs.

  3. Transmission of a heterologous clade C Symbiodinium in a model anemone infection system via asexual reproduction

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    Wan-Nan U. Chen

    2016-08-01

    Full Text Available Anemones of genus Exaiptasia are used as model organisms for the study of cnidarian-dinoflagellate (genus Symbiodinium endosymbiosis. However, while most reef-building corals harbor Symbiodinium of clade C, Exaiptasia spp. anemones mainly harbor clade B Symbiodinium (ITS2 type B1 populations. In this study, we reveal for the first time that bleached Exaiptasia pallida anemones can establish a symbiotic relationship with a clade C Symbiodinium (ITS2 type C1. We further found that anemones can transmit the exogenously supplied clade C Symbiodinium cells to their offspring by asexual reproduction (pedal laceration. In order to corroborate the establishment of stable symbiosis, we used microscopic techniques and genetic analyses to examine several generations of anemones, and the results of these endeavors confirmed the sustainability of the system. These findings provide a framework for understanding the differences in infection dynamics between homologous and heterologous dinoflagellate types using a model anemone infection system.

  4. Molecular characterization of PCN populations from Serbia

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    Oro Violeta

    2012-01-01

    Full Text Available The morphology of potato cyst nematodes (PCN was until recently almost the only way to identify these quarantine organisms. In the last two decades, molecular analyses contributed to faster and more efficient identification of two Globodera species (Globodera pallida and G. rostochiensis and allowed insight into the genetic structure of those parts that were practically inaccessible by morphological studies. Molecular characterization was performed in ITS1-5.8S-ITS2 region. The comparison was made with sequences of different foreign PCN populations via NCBI GenBank database. The results of molecular studies showed similarities and differences between local and foreign PCN populations in the part of genome that was studied.

  5. Rhodotorula portillonensis sp. nov., a basidiomycetous yeast isolated from Antarctic shallow-water marine sediment.

    Science.gov (United States)

    Laich, Federico; Vaca, Inmaculada; Chávez, Renato

    2013-10-01

    During the characterization of the mycobiota associated with shallow-water marine environments from Antarctic sea, a novel pink yeast species was isolated. Sequence analysis of the D1/D2 domain of the LSU rDNA gene and 5.8S-ITS regions revealed that the isolated yeast was closely related to Rhodotorula pallida CBS 320(T) and Rhodotorula benthica CBS 9124(T). On the basis of morphological, biochemical and physiological characterization and phylogenetic analyses, a novel basidiomycetous yeast species, Rhodotorula portillonensis sp. nov., is proposed. The type strain is Pi2(T) ( = CBS 12733(T)  = CECT 13081(T)) which was isolated from shallow-water marine sediment in Fildes Bay, King George Island, Antarctica.

  6. Novos gêneros, novas espécies e redescrição em Hemilophini (Coleoptera, Cerambycidae, Lamiinae das Américas

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    Maria Helena M. Galileo

    2013-03-01

    Full Text Available New genera, new species and redescription in Hemilophini (Coleoptera, Cerambycidae, Lamiinae from the Americas. New taxa described from El Salvador: Eranina sororcula sp. nov. (La Libertad. From Honduras: E. pallida sp. nov. (department not indicated. From Costa Rica: Mexicoscylus nigritarse sp. nov. (Guanacaste and Cotyabanycha gen. nov., type species, C. ocularis sp. nov. (Limón. From Colombia and Ecuador: Sybaguasu mirim sp. nov. (Meta and Napo. From Ecuador: Piampatara antennata sp. nov. (Napo, Adesmus simile sp. nov. (Manabi, A. alboniger sp. nov. (Napo, A. swifti sp. nov. (Loja. From Bolivia: Potiapunga gen. nov., type species P. lata sp. nov. (Santa Cruz. Phoebe spegazzinii Bruch, 1908 is recorded for Ecuador (Manabi and its chromatic variation is commented.

  7. Repelência e deterrência na oviposição de Bemisia tabaci biótipo B pelo uso de extratos vegetais em Cucurbita pepo L Repellence and deterrence on oviposition of Bemisia tabaci biotype B by the use of vegetal extracts in Cucurbita pepo L

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    J.P.G.F. Silva

    2012-01-01

    Full Text Available Bemisia tabaci biótipo B é um dos principais insetos-praga na cultura da abobrinha (Cucurbita pepo L.. O manejo dessa mosca-branca tornou-se grande desafio aos agricultores, uma vez que esta apresenta rápida capacidade de desenvolver resistência a diferentes classes de inseticidas. Como alternativa vem sendo investigado o uso de extratos vegetais com atividades inseticida e/ou insetistática, os quais têm revelado resultados promissores no combate a inseto. O presente trabalho teve por objetivo avaliar os possíveis efeitos de sete extratos provenientes de cinco espécies vegetais, Ruta graveolens L. (folhas, Azadirachta indica A. Juss. (folhas + ramos, Trichilia pallida Swartz (ramos, T. pallida (folhas, A. indica (amêndoas, Chenopodium ambrosioides L. (inflorescências + ramos+ folhas e Mentha pulegium L. (folhas, sobre Bemisia tabaci biótipo B em abobrinha, por meio de testes de repelência e deterrência para oviposição. Em teste com chance de escolha, avaliou-se a atratividade e determinou-se o índice de repelência após 6, 24 e 48 horas da aplicação dos extratos. A oviposição foi verificada após a terceira contagem do número de adultos. O extrato à base de folhas de M. pulegium mostrou repelência e deterrência à oviposição de B. tabaci biótipo B, podendo ser recomendado como alternativa para o manejo do inseto.Bemisia tabaci biotype B is one of the main pests in squash (Cucurbita pepo L.. The management of this whitefly has become a major challenge to growers, since they have the ability to quickly develop resistance to different classes of insecticides. Alternatively, the use of plant extracts with insecticide and/or insectistatic activities has been investigated, showing promising results for the whitefly control. The present study evaluated the possible effects of seven extracts from five plant species, Ruta graveolens L. (leaves, Azadirachta indica A. Juss. (leaves + branches, Trichilia pallida Swartz (branches

  8. Orchid Inventory and the Host in Meru Betiri National Park – East Java

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    DWI MURTI PUSPITANINGTYAS

    2007-07-01

    Full Text Available Meru Betiri National Park is located in southern part of East Java Province. Inventory of orchid species was conducted to study orchid diversity in Meru Betiri National Park, especially in Bandealit coastal area. Observation of orchid within host trees was also done to study the preference host trees for orchid growth. It was recorded that there were 25 orchid species belonging to 20 genera. Twenty species of which are epiphyte and 5 species are terrestrial. The most common epiphyte orchids were Pomatocalpa latifolia, Pomatocalpa spicata, Rhynchostylis retusa, Micropera pallida and Grosourdya appendiculata. While terrestrial orchid was only found in a small number, with common terrestrial orchids were Corymborkis veratrifolia and Goodyera rubicunda. The most preference host trees for epiphyte orchid were Tectona grandis (Teak, Clausena indica, Lagerstroemia speciosa, Mangifera indica (Mango, but there is no specific relationship between host trees and epiphyte orchid.

  9. A Study of the Epiphytic Orchids in Jobolarangan Forest

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    ADIANI VIVIATI

    2001-07-01

    Full Text Available The objective of the research was to know the species of epiphytic orchids in Jobolarangan forest. The orchid samples were taken from all stand-plants. The plants were chosen randomly by considering the diversity and richness of orchids that attach on it. Each plant was sampled in three repetitions. Sampling of orchids existence in the plant’s stand were done using transect method through a zonation system. In this research 11 epiphytic-orchids such as Bulbophyllum bakhuizenii Stenn, Coelogyne miniata Lindl, Coelogyne rochussenii de Vr., Dendrobium bigibbum Lindl., Dendrobchilum longifolium, Eria bogoriensis, J.J.S. Liparis caespitosa (Thou. Lindl., Liparis pallida (Bl.. Pholidota globosa (Bl. Lindl., Polystachya flavescens (Bl. J.J.S., and Trichoglottis sp. were found. The host plant stand that was attached with most orchids was Schefflera fastigiata and Saurauia bracteosa, generally in zone three.

  10. Avaliação integrada da qualidade química e da genotoxicidade da água do arroio Luiz Rau, no trecho inferior da Bacia do Rio dos Sinos, no Sul do Brasil

    OpenAIRE

    Petry, Camila Tamires; Costa, Gustavo Marques da; Benvenuti, Tatiane; Rodrigues, Marco Antônio Siqueira; Droste, Annette

    2016-01-01

    A qualidade química e a genotoxicidade da água do arroio Luiz Rau em Novo Hamburgo (Rio Grande do Sul, Brasil) e a relação entre os danos genéticos observados em Tradescantia pallida var. purpurea e parâmetros químicos foram analisados. Amostras de água foram coletadas bimestralmente, entre setembro de 2012 e março de 2013 em dois sítios: próximo à nascente (S1) e próximo à foz (S2) do arroio. Ramos com botões florais foram expostos à água dos sítios e à água destilada (controle negativo). Fr...

  11. A diverse host thrombospondin-type-1 repeat protein repertoire promotes symbiont colonization during establishment of cnidarian-dinoflagellate symbiosis.

    Science.gov (United States)

    Neubauer, Emilie-Fleur; Poole, Angela Z; Neubauer, Philipp; Detournay, Olivier; Tan, Kenneth; Davy, Simon K; Weis, Virginia M

    2017-05-08

    The mutualistic endosymbiosis between cnidarians and dinoflagellates is mediated by complex inter-partner signaling events, where the host cnidarian innate immune system plays a crucial role in recognition and regulation of symbionts. To date, little is known about the diversity of thrombospondin-type-1 repeat (TSR) domain proteins in basal metazoans or their potential role in regulation of cnidarian-dinoflagellate mutualisms. We reveal a large and diverse repertoire of TSR proteins in seven anthozoan species, and show that in the model sea anemone Aiptasia pallida the TSR domain promotes colonization of the host by the symbiotic dinoflagellate Symbiodinium minutum . Blocking TSR domains led to decreased colonization success, while adding exogenous TSRs resulted in a 'super colonization'. Furthermore, gene expression of TSR proteins was highest at early time-points during symbiosis establishment. Our work characterizes the diversity of cnidarian TSR proteins and provides evidence that these proteins play an important role in the establishment of cnidarian-dinoflagellate symbiosis.

  12. The morphometric parameters of seeds of genus Echinacea Moench representatives and their association with agrometeorological factors

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    С. В. Поспєлов

    2015-12-01

    Full Text Available Purpose. To study morphometric parameters of fruits (cypselae of purple coneflower (Echinacea purpurea (L. Moench of ‘Zirka Mykoly Vavylova’ cultivar and pale coneflower (Echinacea pallida (Nutt. Nutt of ‘Krasunia Prerii’ cultivar and determine the impact of agro-meteorological factors on their performance according to long-term data. Methods. Laboratory, Mathematics and Statistics. Results. It was found that the parameters of cypselae and its weight in various types of coneflowers varied considerably from year to year. In this context the indicators of cypselae width and thickness had a larger variability as compared with the length. Mean length of Echinacea purpurea ranged from 4,57 to 6,16 mm, width – 2,30–2,97 mm, thickness – 1,74–2,28 mm. Weight of a cypselae made up 4,40–6,50 mg. Length of a fruit of Echinacea pallida was 4,57–5,74 mm, width – 2,51–3,18 mm, thickness – 1,76–2,37 mm, and a fruit weight varied from 5,65 to 7,70 mg. The correlation analysis revealed reliable connection of agro-climatic parameters and the parameters of the fruit. Conclusions. Using long-term data, the morphology of cypselaes of two Echinacea species introduced to Ukraine were studied, their basic parameters and the variability of indicators, connection with agro-climatic factors that is necessary to consider in crop growing for seeds .

  13. Molecular assessment of Hepatozoon (Apicomplexa: Adeleorina) infections in wild canids and rodents from north Africa, with implications for transmission dynamics across taxonomic groups.

    Science.gov (United States)

    Maia, João P; Alvares, Francisco; Boratyński, Zbyszek; Brito, José C; Leite, João V; Harris, D James

    2014-10-01

    Parasites play a major role in ecosystems, and understanding of host-parasite interactions is important for predicting parasite transmission dynamics and epidemiology. However, there is still a lack of knowledge about the distribution, diversity, and impact of parasites in wildlife, especially from remote areas. Hepatozoon is a genus of apicomplexan parasites that is transmitted by ingestion of infected arthropod vectors. However, alternative modes of transmission have been identified such as trophic transmission. Using the 18S rRNA gene as a marker, we provide an assessment of Hepatozoon prevalence in six wild canid and two rodent species collected between 2003 and 2012 from remote areas in North Africa. By combining this with other predator-prey systems in a phylogenetic framework, we investigate Hepatozoon transmission dynamics in distinct host taxa. Prevalence was high overall among host species (African jerboa Jaculus jaculus [17/47, 36%], greater Egyptian jerboa Jaculus orientalis [5/7, 71%], side-striped jackal Canis adustus [1/2, 50%], golden jackal Canis aureus [6/32, 18%], pale fox Vulpes pallida [14/28, 50%], Rüppell's fox Vulpes rueppellii [6/11, 55%], red fox Vulpes vulpes [8/16, 50%], and fennec fox Vulpes zerda [7/11, 42%]). Phylogenetic analysis showed further evidence of occasional transmission of Hepatozoon lineages from prey to canid predators, which seems to occur less frequently than in other predator-prey systems such as between snakes and lizards. Due to the complex nature of the Hepatozoon lifecycle (heteroxenous and vector-borne), future studies on these wild host species need to clarify the dynamics of alternative modes of Hepatozoon transmission and identify reservoir and definitive hosts in natural populations. We also detected putative Babesia spp. (Apicomplexa: Piroplasmida) infections in two canid species from this region, V. pallida (1/28) and V. zerda (1/11).

  14. Partitioning of Respiration in an Animal-Algal Symbiosis: Implications for Different Aerobic Capacity Between Symbiodinium spp.

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    Thomas David Hawkins

    2016-04-01

    Full Text Available Cnidarian-dinoflagellate symbioses are ecologically important and the subject of much investigation. However, our understanding of critical aspects of symbiosis physiology, such as the partitioning of total respiration between the host and symbiont, remains incomplete. Specifically, we know little about how the relationship between host and symbiont respiration varies between different holobionts (host-symbiont combinations. We applied molecular and biochemical techniques to investigate aerobic respiratory capacity in naturally symbiotic Exaiptasia pallida sea anemones, alongside animals infected with either homologous ITS2-type A4 Symbiodinium or a heterologous isolate of Symbiodinium minutum (ITS2-type B1. In naturally symbiotic anemones, host, symbiont, and total holobiont mitochondrial citrate synthase (CS enzyme activity, but not host mitochondrial copy number, were reliable predictors of holobiont respiration. There was a positive association between symbiont density and host CS specific activity (mg protein-1, and a negative correlation between host- and symbiont CS specific activities. Notably, partitioning of total CS activity between host and symbiont in this natural E. pallida population was significantly different to the host/symbiont biomass ratio. In re-infected anemones, we found significant between-holobiont differences in the CS specific activity of the algal symbionts. Furthermore, the relationship between the partitioning of total CS activity and the host/symbiont biomass ratio differed between holobionts. These data have broad implications for our understanding of cnidarian-algal symbiosis. Specifically, the long-held assumption of equivalency between symbiont/host biomass and respiration ratios can result in significant overestimation of symbiont respiration and potentially erroneous conclusions regarding the percentage of carbon translocated to the host. The interspecific variability in symbiont aerobic capacity provides

  15. Biomonitoring of genotoxic effects and elemental accumulation derived from air pollution in community urban gardens.

    Science.gov (United States)

    Amato-Lourenco, Luís Fernando; Lobo, Debora Jã A; Guimarães, Eliane T; Moreira, Tiana Carla Lopes; Carvalho-Oliveira, Regiani; Saiki, Mitiko; Saldiva, Paulo Hilário Nascimento; Mauad, Thais

    2017-01-01

    Urban gardening is a growing global phenomenon with a positive impact on society. Despite several associated benefits, growing vegetables in urban gardens that are localized in highly polluted areas poses questions about the safety of the produced food. Therefore, the identification of risk factors that result in possible deleterious effects to human health is important for realizing all of the benefits to society. We evaluated the use of two biomonitoring methods in ten urban gardens of Sao Paulo city and one control site: the micronuclei frequencies for early tetrads of Tradescantia pallida (Rose) Hunt. cv. "Purpurea" Boom (hereafter, Trad-MCN) as a short-term indicator of genotoxic response and tree barks to quantify the accumulation of traffic-related chemical elements as a long-term biomarker of air pollution in urban gardens. Mature plants of Tradescantia pallida were exposed in each garden, and their inflorescences were sampled over three months. A random set of 300 early tetrads in 13 to 21 slides per garden were evaluated for micronuclei frequencies. Elemental concentrations in 428 tree barks samples from 107 different trees in the areas surrounding urban gardens were quantified using an energy dispersive X-ray fluorescence spectrometer. The frequency of Trad-MCN has a significant correlation with traffic variables and chemical elements related to road dust and tailpipe emissions deposited in tree barks. Negative associations between Trad-MCN and both the distance through traffic and the presence of vertical obstacles were observed in the community gardens. The Mn/Zn concentrations in tree barks were associated with increased Trad-MCN. Copyright © 2016 Elsevier B.V. All rights reserved.

  16. Toxicity of Secondary Metabolites from Meliaceae Against Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae).

    Science.gov (United States)

    Giongo, A M M; Vendramim, J D; Freitas, S D L; Silva, M F G F

    2016-12-01

    The study was carried out to evaluate the bioactivity of secondary metabolites from Trichilia pallida, Trichilia pallens, and Toona ciliata against fall armyworm Spodoptera frugiperda (J. E. Smith) larvae. The studied compounds included (+/-)-catechins, a triglyceride, and cedrelone isolated from T. ciliata branches, fruits, and stems, respectively; dammaradienol isolated from T. pallida leaves; and scopoletin isolated from T. pallens branches. The compounds' activity was evaluated through ingestion and topic treatment. Treated artificial diet was offered to first instar larvae to evaluate ingestion effect, while an application on the dorsal thoracic region of third instar larvae was used to evaluate the topic effect. Mortality was assessed daily, and larval weight was recorded after 7 days for ingestion and 5 days for topic application. Scopoletin and triglyceride caused low mortality rates and reduction in larval weight by ingestion, (+/-)-catechins caused larval weight reduction by ingestion, and scopoletin reduced survival by topic treatment. The most effective compound was cedrelone that affected larval survival and development mainly by ingestion. The estimated LC 50 , LC 90 , and EC 50 for cedrelone were 0.0365, 0.0659, and 0.0095%, respectively. Further, cedrelone-treated corn leaf discs were offered to fourth instar larvae during 16 h in choice and no-choice tests. The deterrence indexes obtained in the choice tests were 23.5 and 36.3% at concentrations of 0.0365 and 0.0659, respectively. Consumption of cedrelone-treated leaf discs at the concentration of 0.0659% was lower compared to the control in the no-choice test. Thus, cedrelone caused lethal and sublethal effects and phagodeterrence on S. frugiperda and should be further studied.

  17. A phylogeographic investigation of the kelp genus Laminaria (Laminariales, Phaeophyceae), with emphasis on the South Atlantic Ocean.

    Science.gov (United States)

    Rothman, Mark D; Mattio, Lydiane; Anderson, Robert J; Bolton, John J

    2017-08-01

    The genus Laminaria has a wide distribution range compared with other kelp genera because it is found in both the North and the South Atlantic, on both sides of the North Pacific, as well as in the Mediterranean. Hypotheses behind this biogeographical pattern have been discussed by several authors but have not yet been fully evaluated with time-calibrated phylogenies. Based on the analysis of four molecular markers (ITS2, rbcL, atp8 and trnWI), our goal was to reassess the Laminaria species diversity in South Africa, assess its relationship with the other species distributed in the South Atlantic and reconstruct the historical biogeography of the genus. Our results confirm the occurrence of a single species, L. pallida, in southern Africa, and its sister relationship with the North Atlantic L. ochroleuca. Both species belonged to a clade containing the other South Atlantic species: L. abyssalis from Brazil, and the Mediterranean L. rodriguezii. Our time-calibrated phylogenies suggest that Laminaria originated in the northern Pacific around 25 mya, followed by at least two migration events through the Bering Strait after its opening (~5.32 mya). Today, the first is represented by L. solidungula in the Arctic, while the second gave rise to the rest of the Atlantic species. The colonization of the North Atlantic was followed by a gradual colonization southward along the west coast of Europe, into the Mediterranean (~2.07 mya) and two recent, but disconnected, migrations (~1.34 and 0.87 mya) across the equator, giving rise to L. abyssalis in Brazil and L. pallida in southern Africa, respectively. © 2017 Phycological Society of America.

  18. Sequence Exchange between Homologous NB-LRR Genes Converts Virus Resistance into Nematode Resistance, and Vice Versa.

    Science.gov (United States)

    Slootweg, Erik; Koropacka, Kamila; Roosien, Jan; Dees, Robert; Overmars, Hein; Lankhorst, Rene Klein; van Schaik, Casper; Pomp, Rikus; Bouwman, Liesbeth; Helder, Johannes; Schots, Arjen; Bakker, Jaap; Smant, Geert; Goverse, Aska

    2017-09-01

    Plants have evolved a limited repertoire of NB-LRR disease resistance ( R ) genes to protect themselves against myriad pathogens. This limitation is thought to be counterbalanced by the rapid evolution of NB-LRR proteins, as only a few sequence changes have been shown to be sufficient to alter resistance specificities toward novel strains of a pathogen. However, little is known about the flexibility of NB-LRR R genes to switch resistance specificities between phylogenetically unrelated pathogens. To investigate this, we created domain swaps between the close homologs Gpa2 and Rx1 , which confer resistance in potato ( Solanum tuberosum ) to the cyst nematode Globodera pallida and Potato virus X , respectively. The genetic fusion of the CC-NB-ARC of Gpa2 with the LRR of Rx1 (Gpa2 CN /Rx1 L ) results in autoactivity, but lowering the protein levels restored its specific activation response, including extreme resistance to Potato virus X in potato shoots. The reciprocal chimera (Rx1 CN /Gpa2 L ) shows a loss-of-function phenotype, but exchange of the first three LRRs of Gpa2 by the corresponding region of Rx1 was sufficient to regain a wild-type resistance response to G. pallida in the roots. These data demonstrate that exchanging the recognition moiety in the LRR is sufficient to convert extreme virus resistance in the leaves into mild nematode resistance in the roots, and vice versa. In addition, we show that the CC-NB-ARC can operate independently of the recognition specificities defined by the LRR domain, either aboveground or belowground. These data show the versatility of NB-LRR genes to generate resistance to unrelated pathogens with completely different lifestyles and routes of invasion. © 2017 American Society of Plant Biologists. All Rights Reserved.

  19. The cyst nematode SPRYSEC protein RBP-1 elicits Gpa2- and RanGAP2-dependent plant cell death.

    Directory of Open Access Journals (Sweden)

    Melanie Ann Sacco

    2009-08-01

    Full Text Available Plant NB-LRR proteins confer robust protection against microbes and metazoan parasites by recognizing pathogen-derived avirulence (Avr proteins that are delivered to the host cytoplasm. Microbial Avr proteins usually function as virulence factors in compatible interactions; however, little is known about the types of metazoan proteins recognized by NB-LRR proteins and their relationship with virulence. In this report, we demonstrate that the secreted protein RBP-1 from the potato cyst nematode Globodera pallida elicits defense responses, including cell death typical of a hypersensitive response (HR, through the NB-LRR protein Gpa2. Gp-Rbp-1 variants from G. pallida populations both virulent and avirulent to Gpa2 demonstrated a high degree of polymorphism, with positive selection detected at numerous sites. All Gp-RBP-1 protein variants from an avirulent population were recognized by Gpa2, whereas virulent populations possessed Gp-RBP-1 protein variants both recognized and non-recognized by Gpa2. Recognition of Gp-RBP-1 by Gpa2 correlated to a single amino acid polymorphism at position 187 in the Gp-RBP-1 SPRY domain. Gp-RBP-1 expressed from Potato virus X elicited Gpa2-mediated defenses that required Ran GTPase-activating protein 2 (RanGAP2, a protein known to interact with the Gpa2 N terminus. Tethering RanGAP2 and Gp-RBP-1 variants via fusion proteins resulted in an enhancement of Gpa2-mediated responses. However, activation of Gpa2 was still dependent on the recognition specificity conferred by amino acid 187 and the Gpa2 LRR domain. These results suggest a two-tiered process wherein RanGAP2 mediates an initial interaction with pathogen-delivered Gp-RBP-1 proteins but where the Gpa2 LRR determines which of these interactions will be productive.

  20. Molecular Diagnosis of Pathogenic Sporothrix Species.

    Directory of Open Access Journals (Sweden)

    Anderson Messias Rodrigues

    2015-12-01

    Full Text Available Sporotrichosis is a chronic (subcutaneous infection caused by thermodimorphic fungi in the order, Ophiostomatales. These fungi are characterized by major differences in routes of transmission, host predilections, species virulence, and susceptibilities to antifungals. Sporothrix species emerge in the form of outbreaks. Large zoonoses and sapronoses are ongoing in Brazil and China, respectively. Current diagnostic methods based on morphology and physiology are inaccurate due to closely related phenotypes with overlapping components between pathogenic and non-pathogenic Sporothrix. There is a critical need for new diagnostic tools that are specific, sensitive, and cost-effective.We developed a panel of novel markers, based on calmodulin (CAL gene sequences, for the large-scale diagnosis and epidemiology of clinically relevant members of the Sporothrix genus, and its relative, Ophiostoma. We identified specific PCR-based markers for S. brasiliensis, S. schenckii, S. globosa, S. mexicana, S. pallida, and O. stenoceras. We employed a murine model of disseminated sporotrichosis to optimize a PCR assay for detecting Sporothrix in clinical specimens.Primer-BLAST searches revealed candidate sequences that were conserved within a single species. Species-specific primers showed no significant homology with human, mouse, or microorganisms outside the Sporothrix genus. The detection limit was 10-100 fg of DNA in a single round of PCR for identifying S. brasiliensis, S. schenckii, S. globosa, S. mexicana, and S. pallida. A simple, direct PCR assay, with conidia as a source of DNA, was effective for rapid, low-cost genotyping. Samples from a murine model of disseminated sporotrichosis confirmed the feasibility of detecting S. brasiliensis and S. schenckii DNA in spleen, liver, lungs, heart, brain, kidney, tail, and feces of infected animals.This PCR-based method could successfully detect and identify a single species in samples from cultures and from clinical

  1. Molecular Diagnosis of Pathogenic Sporothrix Species

    Science.gov (United States)

    Rodrigues, Anderson Messias; de Hoog, G. Sybren; de Camargo, Zoilo Pires

    2015-01-01

    Background Sporotrichosis is a chronic (sub)cutaneous infection caused by thermodimorphic fungi in the order, Ophiostomatales. These fungi are characterized by major differences in routes of transmission, host predilections, species virulence, and susceptibilities to antifungals. Sporothrix species emerge in the form of outbreaks. Large zoonoses and sapronoses are ongoing in Brazil and China, respectively. Current diagnostic methods based on morphology and physiology are inaccurate due to closely related phenotypes with overlapping components between pathogenic and non-pathogenic Sporothrix. There is a critical need for new diagnostic tools that are specific, sensitive, and cost-effective. Methodology We developed a panel of novel markers, based on calmodulin (CAL) gene sequences, for the large-scale diagnosis and epidemiology of clinically relevant members of the Sporothrix genus, and its relative, Ophiostoma. We identified specific PCR-based markers for S. brasiliensis, S. schenckii, S. globosa, S. mexicana, S. pallida, and O. stenoceras. We employed a murine model of disseminated sporotrichosis to optimize a PCR assay for detecting Sporothrix in clinical specimens. Results Primer-BLAST searches revealed candidate sequences that were conserved within a single species. Species-specific primers showed no significant homology with human, mouse, or microorganisms outside the Sporothrix genus. The detection limit was 10–100 fg of DNA in a single round of PCR for identifying S. brasiliensis, S. schenckii, S. globosa, S. mexicana, and S. pallida. A simple, direct PCR assay, with conidia as a source of DNA, was effective for rapid, low-cost genotyping. Samples from a murine model of disseminated sporotrichosis confirmed the feasibility of detecting S. brasiliensis and S. schenckii DNA in spleen, liver, lungs, heart, brain, kidney, tail, and feces of infected animals. Conclusions This PCR-based method could successfully detect and identify a single species in samples

  2. The Complex Cell Wall Composition of Syncytia Induced by Plant Parasitic Cyst Nematodes Reflects Both Function and Host Plant

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    Li Zhang

    2017-06-01

    Full Text Available Plant–parasitic cyst nematodes induce the formation of specialized feeding structures, syncytia, within their host roots. These unique plant organs serve as the sole nutrient resource for development and reproduction throughout the biotrophic interaction. The multinucleate syncytium, which arises through local dissolution of cell walls and protoplast fusion of multiple adjacent cells, has dense cytoplasm containing numerous organelles, surrounded by thickened outer cell walls that must withstand high turgor pressure. However, little is known about how the constituents of the syncytial cell wall and their conformation support its role during nematode parasitism. We used a set of monoclonal antibodies, targeted to a range of plant cell wall components, to reveal the microstructures of syncytial cell walls induced by four of the most economically important cyst nematode species, Globodera pallida, Heterodera glycines, Heterodera avenae and Heterodera filipjevi, in their respective potato, soybean, and spring wheat host roots. In situ fluorescence analysis revealed highly similar cell wall composition of syncytia induced by G. pallida and H. glycines. Both consisted of abundant xyloglucan, methyl-esterified homogalacturonan and pectic arabinan. In contrast, the walls of syncytia induced in wheat roots by H. avenae and H. filipjevi contain little xyloglucan but are rich in feruloylated xylan and arabinan residues, with variable levels of mixed-linkage glucan. The overall chemical composition of syncytial cell walls reflected the general features of root cell walls of the different host plants. We relate specific components of syncytial cell walls, such as abundant arabinan, methyl-esterification status of pectic homogalacturonan and feruloylation of xylan, to their potential roles in forming a network to support both the strength and flexibility required for syncytium function.

  3. The Complex Cell Wall Composition of Syncytia Induced by Plant Parasitic Cyst Nematodes Reflects Both Function and Host Plant.

    Science.gov (United States)

    Zhang, Li; Lilley, Catherine J; Imren, Mustafa; Knox, J Paul; Urwin, Peter E

    2017-01-01

    Plant-parasitic cyst nematodes induce the formation of specialized feeding structures, syncytia, within their host roots. These unique plant organs serve as the sole nutrient resource for development and reproduction throughout the biotrophic interaction. The multinucleate syncytium, which arises through local dissolution of cell walls and protoplast fusion of multiple adjacent cells, has dense cytoplasm containing numerous organelles, surrounded by thickened outer cell walls that must withstand high turgor pressure. However, little is known about how the constituents of the syncytial cell wall and their conformation support its role during nematode parasitism. We used a set of monoclonal antibodies, targeted to a range of plant cell wall components, to reveal the microstructures of syncytial cell walls induced by four of the most economically important cyst nematode species, Globodera pallida , Heterodera glycines , Heterodera avenae and Heterodera filipjevi , in their respective potato, soybean, and spring wheat host roots. In situ fluorescence analysis revealed highly similar cell wall composition of syncytia induced by G. pallida and H. glycines . Both consisted of abundant xyloglucan, methyl-esterified homogalacturonan and pectic arabinan. In contrast, the walls of syncytia induced in wheat roots by H. avenae and H. filipjevi contain little xyloglucan but are rich in feruloylated xylan and arabinan residues, with variable levels of mixed-linkage glucan. The overall chemical composition of syncytial cell walls reflected the general features of root cell walls of the different host plants. We relate specific components of syncytial cell walls, such as abundant arabinan, methyl-esterification status of pectic homogalacturonan and feruloylation of xylan, to their potential roles in forming a network to support both the strength and flexibility required for syncytium function.

  4. Molecular and Pathotype Identification of Potato Cyst Nematodes

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    Mulyadi Mulyadi

    2014-07-01

    Full Text Available In Indonesia, potato cyst nematode (PCN was first reported in Bumiaji, Kota Batu, East Java by PT Syngenta and was identified as Globodera rostochiensis. Based on the surveillances, G. rostochiensis were also found in Batur, Banjarnegara, and Kejajar, Wonosobo, and Pangalengan, Bandung. In addition, in Batur, Banjarnegara, another species which was identified as G. pallida was found. The aim of this research were to identify the species of PCN using molecular method, pathotype identification, and to study the distributions of PCN especially in Java. The PCN are collected from potato planting areas in Kota Batu, East Java; Wonosobo and Banjarnegara, Central Java; and Pangalengan, Bandung, West Java. PCN were extracted and isolated from soil, and then identified by  morphological and molecular analysis. PCN were found in potato planting areas in Kota Batu, East Java; Wonosobo and Banjarnegara, Central Java; and Pangalengan, West Java. Based on the morphological characters, molecular method, and the differential host test, the PCN identified as G. rostochiensis are amplified an approximately 434 bp with pathotype Ro2.   Di Indonesia, nematoda sista kentang (NSK pertama dilaporkan di Bumiaji, Kota Batu, Jawa Timur oleh PT Syngenta yang diidentifikasi sebagai Globodera rostochiensis. Berdasarkan hasil survei, NSK ditemukan di Batur, Banjarnegara dan Kejajar, Wonosobo, Pangalengan. Spesies G. pallida juga ditemukan Batur, Banjarnegara. Penelitian ini bertujuan untuk mengidentifikasi spesies NSK menggunakan metode molekuler, identifikasi patotipe NSK, dan untuk mengetahui penyebaran NSK khususnya di Pulau Jawa. Sampel NSK dikumpulkan dari lahan pertanaman kentang di Bumiaji, Kota Batu, Jawa Timur; Wonosobo dan Banjarnegara, Jawa Tengah; serta Pangalengan, Bandung, Jawa Tengah. NSK diekstraksi dan diisolasi dari tanah yang selanjutnya diidentifikasi secara morfologi dan analisis molekuler. NSK yang terdapat pada lahan pertanaman kentang ditemukan di

  5. Aspectos estructurales y tipos de vegetación de la isla Mocagua, río Amazonas

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    Prieto Adriana

    1995-06-01

    Full Text Available An analysis of some parameters of vegetation structure (coberture -%-, density and specific diversity is presented for plant formations in the Mocagua island (Colombian Amazonia. The structure of the vegetation types ranging from simple river beach zone, aquatic and floodplain environments, to complex arrangement in forest formations. The average number of individuals with DAP > 10 cm (58/0.1 ha is lower than other similar regions. In addition, we describe the types of vegetation founded according with floristic affinities, wich is related to the water content in the sustrata.Tha natural vegetation comprise from aquatic communities of Oxyearyum eubense - Pontederia rotundifolia, to continental ones of Rheedia madruno- Palieourea eroeea, Triehilia pallida - Sommera sabiceoides, phases of Montriehardia arboreseens and Ceeropia latíloba, Paspalum repens and Ceeropia latíloba, and Leptochloa seabra and Torulinium maeroeephalum.Se presentan los resultados de los análisis sobre parámetros estructurales de la vegetación (cobertura-%-, densidad y diversidad específica de las formaciones vegetales de la isla Mocagua (Amazonas, Colombia. La estructura de los tipos de vegetación diferenciados cubre desde los arreglos simples como la de las zonas de playa, ambientes lacustres e inundables, hasta arreglos complejos con diferentes estratos en formaciones boscosas. El número de individuos con DAP > 10 cm (prom.=58/0.1 ha en comparación con los valores en otras zonas es bajo. Los tipos de vegetación descritos obedecen en su distribución esencialmente al contenido de agua en el sustrato; la vegetación natural comprende desde comunidades acuáticas de Oxycaryum cubense - Pontederia rotundifolia, hasta las continentales de Rheedia. madruno - Palieourea eroeea, Triehilia pallida - Sommera sabieeoides y las fases de Montriehardia arboreseens y Ceeropia latiloba, Paspalum repens y Cecropia latiloba, y la de Leptochloa scabra y Torulinium maerocephalum.

  6. Caracterización de especies arbóreas y arbustivas forrajeras en clima semiárido del sur de Mozambique

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    E Cordoví

    Full Text Available Con el objetivo de caracterizar el comportamiento de especies forrajeras arbóreas y arbustivas en clima semiárido se desarrolló un experimento, con corte y en secano, con Gliricidia sepium, Leucaena leucocephala, Leucaena pallida, Moringa oleifera, Senna siamea y Morus alba. El diseño fue de bloques al azar, con cuatro réplicas, y se utilizaron parcelas de 12 m². En verano, L. leucocephala, L. pallida, S. siamea y M. alba produjeron más de 12 t de MS por hectárea como promedio; mientras que en invierno se obtuvieron entre 9,38 y 11,62 t/ha, excepto en M. oleifera (5,49 t/ha. Los intervalos de corte variaron entre 62 y 65 días en verano; mientras que en invierno aumentaron hasta 102 y 117 días en G. sepium y M. oleifera, respectivamente, y oscilaron entre 81 y 92 días para el resto de las especies. El porcentaje de hojas fue superior en invierno y en ello sobresalió S. siamea (62 y 69 % en verano e invierno, respectivamente. Durante el invierno se obtuvo una alta producción de MS, en lo cual se destacaron G. sepium, M. alba y S. siamea (47-50 %. Se confirmó el buen comportamiento de estas especies arbóreas y arbustivas en condiciones semiáridas, con rendimientos de MS superiores a 12 t/ha y una producción estable durante el año. Se recomienda incluirlas en investigaciones con animales en sistemas silvopastoriles y bancos de proteína; así como utilizar otros marcos de siembra en función de mejorar su potencial productivo

  7. In situ monitoring of urban air in Córdoba, Argentina using the Tradescantia-micronucleus (Trad-MCN) bioassay

    Science.gov (United States)

    Carreras, H. A.; Pignata, M. L.; Saldiva, P. H. N.

    During the last decades, a significant deterioration of ambient air quality has been observed in Argentina. However, the availability of air pollution monitoring stations is still limited to only few cities. In this study, we investigated the genotoxicity of ambient levels of air pollution in Córdoba using the Tradescantia micronucleus assay. The experiment was performed from October, 2004 to April 2005. Pots with Tradescantia pallida were placed in three sites: Córdoba city center, characterized by important avenues with high traffic activity (cars, taxis, and public transport vehicles); the university campus, along a side road with heavy traffic of gasoline and diesel powered vehicles, buses and trucks; and a residential area, with no significant local sources of air pollution. Twenty young T. pallida inflorescences were collected from each sampling site in November, February and April. Micronuclei frequencies were determined in early tetrads of pollen mother cells and expressed as MCN/100 tetrads. Simultaneously, the environmental levels of total suspended particles (24 h mean) were determined for each site. A significant difference in micronuclei frequency was observed among sites ( p=0.036). Post-hoc analysis revealed that the residential area exhibited a lower micronuclei frequency than the university and city center areas. In conclusion, we found that the gradients of ambient air pollution of Córdoba are associated with changes in the spontaneous micronuclei frequency of Tradescantia pollen mother cells. These results indicate that in situ biomonitoring with higher plants may be useful for characterizing air pollution in areas without instrumental monitoring techniques, or for exploring the distribution of air contaminants at a microscale.

  8. Germination of seeds of some local pioneer plant species in different hydroseeding mulches for revegetation of post-coal mining soil

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    D. Azalia

    2016-07-01

    Full Text Available The purpose of this study was to determine the hydroseeding mulch optimum compositions for germination and productivity of a few species of local plants pioneer in the post-mining land of coal from South Kalimantan. The method used in this research was by hydroseeding technique. The species observed were Crotalaria pallida, Cajanus cajan, Kyllinga monocephala, Paspalum conjugatum, Digitaria sanguinalis and Eleusine indica. Seven variations of mulch were added to the post-mining soil. Planting seeds carried out were monoculture and polyculture. Each composition of mulch was replicated three times resulting in 147 pots. Seed germination was observed for 15 days. The results showed that all species were able to germinate and and grow well in the mulch that was added to the post-mining soil, except Kyllinga monocephala on mulch two, four and five and Digitaria sanguinalis on mulch four. The best mulch for plant growth was characterized by pH of 6.8-7.0, 47-59% organic matter, and energy ranging from 2,337.68 to 3,792.68 Kcal/kg. The highest percentage of germination was observed for Cajanus cajan (56.7% and Crotalaria pallida (39.4% on mulch two with germination time of eight and three days after planting. The lowest germination percentage was shown by Kyllinga monocephala at all mulch treatments (up to 30 days after planting. The optimum composition of mulch that could be recommended to accelerate the revegetation was mulch two (pH 7.06 and 59% organic matter, especially for Leguminosae, and mulch seven (pH 6.8 and 47% organic matter, especially for Poaceae and polyculture.

  9. Myxomycetes em Palmeiras (Arecaceae Myxomycetes on palm trees (Arecaceae

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    Maria Helena Alves

    1996-07-01

    Full Text Available As palmeiras oferecem um ecossistema especializado que abriga organismos variados, incluindo Myxomycetes. Este trabalho relata doze espécies de Myxomycetes encontradas em folhas mortas, espata e estipe de Acrocomia intumescens Drude (macaúba, Copernicea prunifera (Mill. H. E. Moore (carnaúba, Mauritia flexuosa Mart, (buriti e Orbygnia phalerata Mart, (babaçu. Constitui-se área de coleta o Município do Crato, Ceará, Nordeste do Brasil (7º 30'00" S, 39º 00' 00" W, 400-1200 m de altitude. Coletas aleatórias foram efetuadas e as frutificações foram pesquisadas em órgãos vivos ou mortos das palmeiras. Exsicatas foram depositadas no Herbário UFP (Departamento de Botânica da Universidade Federal de Pernambuco, Recife - PE, Brasil. As espécies registradas pertencem aos gêneros Ceratiomyxa (1, Dictydium (1, Arcyria (1, Hemitrichia (1, Badhamia (1, Fuligo (1, Physarum (3, Stemonitis (2 e Comatricha (1. Ceratiomyxa fruticulosa (Miill. Macbr., Physarum stellatum (Mass. Mart., Stemonitis pallida Win. e Comatricha typhoides (Bull. Rost. são referidas pela primeira vez para este tipo de substrato. Este trabalho eleva para 35 o número de espécies de Myxomycetes assinaladas sobre palmeiras até o momento.Palm trees are specialized ecossystems which hosts a wide variety of organisms, including Myxomycetes. This paper reports twelve species of Myxomycetes found on dead leaves, spathes and stipitis of Acrocomia intumescens Drude, Copernicea prunifera (Mill. H. E. Moore, Mauritia flexuosa Mart., and Orbygnia phalerata Mart. The collecting area is located in the Municipality Crato of Ceará State, Northeastern Brazil (7º 30'00" S, 39º 00' 00" W, 400-1200 m altitude. Samples were taken at random and Myxomycetes fructifications were searched on dead and living organs of palm trees. Exsiccatae have been deposited in the Herbarium UFP (Department of Botany, Federal University of Pernambuco, Recife-PE, Brazil. The species registered belong to the

  10. Description of Globodera ellingtonae n. sp. (Nematoda: Heteroderidae) from Oregon.

    Science.gov (United States)

    Handoo, Zafar A; Carta, Lynn K; Skantar, Andrea M; Chitwood, David J

    2012-03-01

    A new species of cyst nematode, Globodera ellingtonae, is described from soil collected from a field in Oregon. Second-stage juveniles (J2) of the species are characterized by body length of 365-515 μm, stylet length of 19-22.5 μm, basal knobs rounded posteriorly and pointed anteriorly, tail 39-55 μm, hyaline tail terminus 20-32.5 μm, and tail tapering uniformly but abruptly narrowing and constricted near the posterior third of the hyaline portion, ending with a peg-like, finely rounded to pointed terminus. Cysts are spherical to sub-spherical, dark to light brown and circumfenestrate and cyst wall pattern is ridge-like with heavy punctations. Males have a stylet length of 21-25 μm and spicule length of 30-37 μm with a pointed thorn-like tip. Females have a stylet length of 20-22.5 μm, one head annule and labial disc, heavy punctations on the cuticle, and short vulval slit 7.5-8 μm long. Morphologically this new, round-cyst species differs from the related species G. pallida, G. rostochiensis, G. tabacum complex and G. mexicana by its distinctive J2 tail, and by one or another of the following: shorter mean stylet length in J2, females and males; number of refractive bodies in the hyaline tail terminus of J2; cyst morphology including Granek's ratio; number of cuticular ridges between the anus and vulva; and in the shape and length of spicules in males. Its relationship to these closely related species are discussed. Based upon analysis of ribosomal internal transcribed spacer (ITS) sequences, G. ellingtonae n. sp. is distinct from G. pallida, G. rostochiensis, G. tabacum and G. mexicana. Bayesian and Maximum Parsimony analysis of cloned ITS rRNA gene sequences indicated three clades, with intraspecific variability as high as 2.8%. In silico analysis revealed ITS restriction fragment length polymorphisms for enzymes Bsh 1236I, Hinf I, and Rsa I that overlap patterns for other Globodera species.

  11. Análise estrutural e considerações sobre a dinâmica sucessional de dois fragmentos florestais semideciduais do Jardim Botânico Municipal de Bauru, SP, Brasil Structural analysis and considerations on the successional dynamic of two semideciduous forest fragments at the Municipal Botanical Garden of Bauru, SP, Brazil

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    Marcelo Henrique Ongaro Pinheiro

    2009-12-01

    Full Text Available Parâmetros fitossociológicos, como freqüência de classes de altura e de diâmetro, são muito utilizados em inferências sobre sucessão secundária em fitocenoses. Indivíduos abustivo-arbóreos com no mínimo 1,5 m de altura e fuste a 1,3 m, foram amostrados em 2.600 m² de floresta estacional semidecidual do Jardim Botânico Municipal de Bauru (JBMB. Informações sobre as freqüências de classes de diâmetro das cinco espécies com maior índice de valor de importância (Ocotea pulchella, Protium heptaphyllum, Copaifera langsdorffii, Platypodium elegans e Trichilia pallida e a classificação sucessional das populações mais numerosas também foram analisadas para inferências sobre as características sucessionais da comunidade estudada. As freqüências de classes de diâmetro de Vochysia tucanorum, espécie típica de savana, também foi estudada. As informações obtidas permitiram considerar que a floresta do JBMB encontra-se em estádio sucessional intermediário, e que, embora tenha sofrido com a ação do fogo no passado, algumas dessas populações estão conseguindo renovar-se.Phytosociological parameters, as the frequency of height and diameter classes, are commonly used to make inferences about secondary succession in given phytocenoses. Shrub and tree individuals higher than 1.5 m and with a bole length of at least 1.3 m were sampled in 2,600 m2 of semideciduous seasonal forest in the Municipal Botanical Garden of Bauru (JBMB. Information on the diameter class frequencies of five species with the highest Importance Value Index (Ocotea pulchella, Protium heptaphyllum, Copaifera langsdorffii, Platypodium elegans and Trichilia pallida and the more numerous species' successional classification were analyzed to make inferences about the successional features of the studied community. The diameter class frequencies of savannic species Vochysia tucanorum were also studied. The information obtained allowed to consider that the

  12. Plants as warning signal for exposure to low dose radiation

    International Nuclear Information System (INIS)

    Rusli Ibrahim; Norhafiz Talib

    2012-01-01

    The stamen-hair system of Tradescantia for flower colour has proven to be one of the most suitable materials to study the frequency of mutations induced by low doses of various ionizing radiations and chemical mutagens. The system has also been used successfully for detecting mutagenic synergisms among chemical mutagens and ionizing radiations as well as for studying the variations of spontaneous mutation frequency. In this study of radiobiology, the main objective is to observe somatic mutation (occurrence of pink cells from blue cells) induced on stamen hairs of five Tradescantia sp. available in Malaysia after exposure to low doses of chronic gamma irradiation using Gamma Green House. Pink cells appeared only on Tradescantia Pallida Purpurea stamen hairs after 13 days of exposure to irradiation with different doses of gamma rays. The highest number of stamens with pink cells was recorded from flowers irradiated with the highest dose of 6.37 Gy with 0.07 Gy/ h of dose rate. The lowest number of stamens with pink cells was recorded with an average of 0.57, irradiated with the lowest dose of 0.91 Gy with 0.01 Gy/ h of dose rate. There were no pink cells observed on Tradescantia Spathaceae Discolor after exposure to different doses of gamma rays. Similar negative results were observed for the control experiments. The principal cells in this assay are the mitotic stamen hair cells developing in the young flower buds. After exposure to radiation, the heterozygous dominant blue character of the stamen hair cell is prevented, resulting in the appearance of the recessive pink color. Furthermore, no pink cell appears on all species of Tradescantia spathaceae after irradiated with different doses of gamma rays. The sensitivity of the Tradescantia has been used widely and has demonstrated the relation between radiation dose and frequency of mutation observed at low doses which can contribute to the effects of low doses and their consequences for human health. This system

  13. The scavenger receptor repertoire in six cnidarian species and its putative role in cnidarian-dinoflagellate symbiosis

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    Emilie F. Neubauer

    2016-11-01

    Full Text Available Many cnidarians engage in a mutualism with endosymbiotic photosynthetic dinoflagellates that forms the basis of the coral reef ecosystem. Interpartner interaction and regulation includes involvement of the host innate immune system. Basal metazoans, including cnidarians have diverse and complex innate immune repertoires that are just beginning to be described. Scavenger receptors (SR are a diverse superfamily of innate immunity genes that recognize a broad array of microbial ligands and participate in phagocytosis of invading microbes. The superfamily includes subclades named SR-A through SR-I that are categorized based on the arrangement of sequence domains including the scavenger receptor cysteine rich (SRCR, the C-type lectin (CTLD and the CD36 domains. Previous functional and gene expression studies on cnidarian-dinoflagellate symbiosis have implicated SR-like proteins in interpartner communication and regulation. In this study, we characterized the SR repertoire from a combination of genomic and transcriptomic resources from six cnidarian species in the Class Anthozoa. We combined these bioinformatic analyses with functional experiments using the SR inhibitor fucoidan to explore a role for SRs in cnidarian symbiosis and immunity. Bioinformatic searches revealed a large diversity of SR-like genes that resembled SR-As, SR-Bs, SR-Es and SR-Is. SRCRs, CTLDs and CD36 domains were identified in multiple sequences in combinations that were highly homologous to vertebrate SRs as well as in proteins with novel domain combinations. Phylogenetic analyses of CD36 domains of the SR-B-like sequences from a diversity of metazoans grouped cnidarian with bilaterian sequences separate from other basal metazoans. All cnidarian sequences grouped together with moderate support in a subclade separately from bilaterian sequences. Functional experiments were carried out on the sea anemone Aiptasia pallida that engages in a symbiosis with Symbiodinium minutum

  14. Groundwater Availability Alters Soil-plant Nutrient Cycling in a Stand of Invasive, N-fixing Phreatophytes

    Science.gov (United States)

    Dudley, B. D.; Miyazawa, Y.; Hughes, F.; Ostertag, R.; Kettwich, S. K.; MacKenzie, R.; Dulaiova, H.; Waters, C. A.; Bishop, J.; Giambelluca, T. W.

    2013-12-01

    N-fixing phreatophytic trees are common in arid and semi-arid regions worldwide, and can play significant roles in modifying hydrology and soil-plant nutrient cycling where they are present. In light of reductions in groundwater levels in many arid regions we estimated annual transpiration rates at a stand level, and alterations to C, N and P accretion in soils as a function of groundwater depth in a ca.120 year old stand of Prosopis pallida along an elevation gradient in coastal leeward Hawaii. We measured sapflow and stand level sapwood area to quantify transpiration, and calculated groundwater transpiration rates using P. pallida stem water δ18O values. By measuring soil resistivity, we were able to compare the volume of groundwater transpired by these trees to groundwater depth across the stand. We examined nutrient deposition and accretion in soils in lowland areas of the stand with accessible shallow groundwater, compared to upland areas with no groundwater access, as indicated by stem water δ18O values. Resistivity results suggested that groundwater was at a height close to sea level throughout the stand. Transpiration was around 1900 m3 ha-1 year-1 in the areas of the stand closest to the sea (where groundwater was at around 1-4 m below ground level) and decreased to around a tenth of that volume where groundwater was not accessible. Litterfall rates over the course of the year studied were 17 times greater at lowland sites, but this litterfall contributed ca. 24 times the N, and 35 times the P of upland sites. Thus, groundwater access contributed to the total mass of nitrogen and phosphorus deposited in the form of litter through higher litter quantity and quality. Total N content of soils was 4.7 times greater and inorganic N pools were eight times higher at lowland plots. These results suggest that groundwater depth can have strong effects on soil-plant nutrient cycling, so that reductions in the availability of shallow groundwater are likely to impact

  15. The Germination of Some Species Tropical Legume Seeds

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    Eko Poetri

    2005-09-01

    Full Text Available A study to evaluate the seed germination of Leucaena pallida under climatic and soil conditions in Palu was conducted in village of Taipa, Sub district of North Palu, District of Palu. To compare with other species of legume trees however, this study involved Leucaena leucocephala cv Tarramba, Leucaena leucocephala cv Gumph and Gliricidia maculata. This experiment used completely randomized design with species of tropical tree legumes as treatment.  Each treatment was replicated five times.  Each experimental unit consisted of one tray (size 12.5 x 25 cm and planted by 20 seed.  Each tray was filled with soil while the seeds were planted one cm deep.  All seeds were immersed in warm water (600C for five minutes before planted.  The base of the trays were drilled to create some holes for water to drain out.  The trays were sprayed twice daily (07.00 am and 03.00 pm to keep the soil to be moist using a very smooth sprayer.  The variables recorded included the initiation time of germination, the range time of germination and the percentage of seed germination.  The data obtained were analyses using the Minitab 11. Least significance difference was used to test for possible differences between treatment means. The result revealed that initiation time of germination and the range of germination were not varied (P>0.05 among the seeds tested. The initiation time of germination ranged between 9 to 12 d after sowing.  Gliricidia maculata seed has the shortest period to germinate (12-16 d after sowing, meanwhile Leucaena leucocephala cv. Tarramba appear to be the longest (9-17 d after sowing. The highest seed viability was 60% in Leucaena leucocephala, cv Gump while the lowest was found in Gliricidia maculata (29%. In addition, both Leucaena pallida and Leucaena leucocephala cv Tarramba had medium seed germination (40% and 53% respectively. (Animal Production 7(3: 156-160 (2005Key Words: Seed, Germination, Tropical Leguminous

  16. Two new species of Syndesmis (Platyhelminthes, Rhabdocoela, Umagillidae from the sea urchin Pseudechinus magellanicus (Echinodermata, Echinoidea in the Southwestern Atlantic Ocean

    Directory of Open Access Journals (Sweden)

    Francisco Brusa

    2017-08-01

    Full Text Available In this paper, we describe two new species of Syndesmis living in Pseudechinus magellanicus in the Southwest Atlantic Ocean. The new species have a long stylet in the male reproductive system, which is different from that of the known species of the genus. Specimens of Syndesmis selknami n. sp. have a ∼220-μm-long stylet (∼1/3 of the body length, 0.69 mm. This ratio is unique because only four species (Syndesmis echinorum, Syndesmis rubida, Syndesmis inconspicua and Syndesmis echiniacuti have similar stylet lengths but are larger in body sizes (3–5 mm. Specimens of Syndesmis aonikenki n. sp. have a ∼148-μm-long stylet (∼1/10 of the body length, 1.11 mm. Syndesmis pallida has a similar ratio but the uterus is located posteriorly, and the filament glands are very small and located in the posterior region of the body. These are the first flatworms reported parasitizing Pseudechinus magellanicus.

  17. Experimentally Induced Bleaching in the Sea Anemone Exaiptasia Supports Glucose as a Main Metabolite Associated with Its Symbiosis

    Directory of Open Access Journals (Sweden)

    Víctor Hugo Molina

    2017-01-01

    Full Text Available Our current understanding of carbon exchange between partners in the Symbiodinium-cnidarian symbioses is still limited, even though studies employing carbon isotopes have made us aware of the metabolic complexity of this exchange. We examined glycerol and glucose metabolism to better understand how photosynthates are exchanged between host and symbiont. The levels of these metabolites were compared between symbiotic and bleached Exaiptasia pallida anemones, assaying enzymes directly involved in their metabolism. We measured a significant decrease of glucose levels in bleached animals but a significant increase in glycerol and G3P pools, suggesting that bleached animals degrade lipids to compensate for the loss of symbionts and seem to rely on symbiotic glucose. The lower glycerol 3-phosphate dehydrogenase but higher glucose 6-phosphate dehydrogenase specific activities measured in bleached animals agree with a metabolic deficit mainly due to the loss of glucose from the ruptured symbiosis. These results corroborate previous observations on carbon translocation from symbiont to host in the sea anemone Exaiptasia, where glucose was proposed as a main translocated metabolite. To better understand photosynthate translocation and its regulation, additional research with other symbiotic cnidarians is needed, in particular, those with calcium carbonate skeletons.

  18. Construction and analysis of the cDNA subtraction library of yeast and mycelial phases of Sporothrix globosa isolated in China: identification of differentially expressed genes*

    Science.gov (United States)

    Hu, Qing-bi; He, Yu; Zhou, Xun

    2015-01-01

    Species included in the Sporothrix schenckii complex are temperature-dependent with dimorphic growth and cause sporotrichosis that is characterized by chronic and fatal lymphocutaneous lesions. The putative species included in the Sporothrix complex are S. brasiliensis, S. globosa, S. mexicana, S. pallida, S. schenckii, and S. lurei. S. globosa is the causal agent of sporotrichosis in China, and its pathogenicity appears to be closely related to the dimorphic transition, i.e. from the mycelial to the yeast phase, it adapts to changing environmental conditions. To determine the molecular mechanisms of the switching process that mediates the dimorphic transition of S. globosa, suppression subtractive hybridization (SSH) was used to prepare a complementary DNA (cDNA) subtraction library from the yeast and mycelial phases. Bioinformatics analysis was performed to profile the relationship between differently expressed genes and the dimorphic transition. Two genes that were expressed at higher levels by the yeast form were selected, and their differential expression levels were verified using a quantitative real-time reverse transcriptase polymerase chain reaction (qRT-PCR). It is believed that these differently expressed genes are involved in the pathogenesis of S. globosa infection in China. PMID:26642182

  19. Annotated type catalogue of the Orthalicoidea (Mollusca, Gastropoda in the Museum für Naturkunde, Berlin

    Directory of Open Access Journals (Sweden)

    Abraham Breure

    2013-03-01

    Full Text Available The type status is described of 96 taxa classified within the superfamily Orthalicoidea and present in the Mollusca collection of the Museum für Naturkunde der Humboldt-Universität zu Berlin. Lectotypes are designated for the following taxa: Orthalicus elegans Rolle, 1895; Bulimus maranhonensis Albers, 1854; Orthalicus nobilis Rolle, 1895; Orthalichus tricinctus Martens, 1893. Orthalicus sphinx tresmariae is introduced as new name for Zebra sphinx turrita Strebel, 1909, not Z. quagga turrita Strebel, 1909. The following synonyms are established: Zebra crosseifischeri Strebel, 1909 = Orthalicus princeps fischeri Martens, 1893; Orthalicus isabellinus Martens, 1873 = O. bensoni (Reeve, 1849; Zebra zoniferus naesiotes Strebel, 1909 = Orthalicus undatus (Bruguière, 1789; Porphyrobaphe (Myiorthalicus dennisoni pallida Strebel, 1909 = Hemibulimus dennisoni (Reeve, 1848; Zebra delphinus pumilio Strebel, 1909 = Orthalicus delphinus (Strebel, 1909; Orthalicus (Laeorthalicus reginaeformis Strebel, 1909 = Corona perversa (Swainson, 1821; Bulimus (Eurytus corticosus Sowerby III, 1895 = Plekocheilus (Eurytus stuebeli Martens, 1885. The taxon Bulimus (Eudioptus psidii Martens, 1877 is now placed within the family Sagdidae, tentatively in the genus Platysuccinea. Appendices are included with an index to all the types of Orthalicoidea extant (including those listed by Köhler 2007 and a partial list of letters present in the correspondence archives.

  20. Environmental monitoring to the sources of atmospheric emission by the Trad-MCN bioassay and analysis of the accumulative potential for uranium and fluoride

    Energy Technology Data Exchange (ETDEWEB)

    Machado, Alessandra C.F.E., E-mail: alessandra@ctmsp.mar.mil.b [Centro Tecnologico da Marinha em Sao Paulo (CTMSP), SP (Brazil). Div. de Monitoracao Ambiental; Ramos, Monique M.B., E-mail: monique@ctmsp.mar.mil.b [Centro Tecnologico da Marinha em Sao Paulo (CTMSP), SP (Brazil). Div. de Analise de Seguranca; Alves, Edenise S., E-mail: ealves@ibot.sp.gov.b [Instituto de Botanica de Sao Paulo, Sao Paulo, SP (Brazil). Secao de Anatomia

    2009-07-01

    The biomonitoring of the atmospheric contamination constitutes important procedure for adoption of environmental control measures. Biological assays have been employed to evaluate genotoxic agents in the atmosphere. The Tradescantia-micronucleus (Trad-MCN) assay has been extensively used in environmental monitoring owing to its efficiency in the detection of chromosomic damages in cytological preparations of easy execution. In this study we tested the viability of use of Trad-MCN with Tradescantia pallida cv. Purpurea for environmental monitoring in the Experimental Center Aramar (CEA), in Ipero - SP and its leaf accumulation capacity. The plants were exposed in situ, in flower-beds or flowerpots, established close to the sources of atmospheric emission. The bioassay was accomplished according to the usual protocol. The micronucleus frequencies were compared using the variance Kruskal-Wallis test. The obtained results indicated that the biomonitoring model adopted was not the ideal for the CEA, considering that the plant suffered the influence of climatic condition. However the plant showed to have accumulative potential for uranium. (author)

  1. A phytosociological analysis and synopsis of the dry woodlands and succulent vegetation of the Peruvian Andes

    Directory of Open Access Journals (Sweden)

    ANTONIO GALÁN-DE-MERA

    2016-01-01

    Full Text Available ABSTRACT A phytosociological approach to dry forest and cactus communities on the occidental slopes of the Peruvian Andes is presented in base of 164 plots carried out following the Braun-Blanquet method. From them, 52 have been made recently, and the other 112 were taken from the literature. After a multivariate analysis, using a hierarchical clustering and a detendred correspondence analysis, the Acacio-Prosopidetea class (dry forest and cactus communities, developed on soils with some edaphic humidity or precipitations derived from El Niño Current, the Opuntietea sphaericae class (cactus communities of central and southern Peru, on few stabilized rocky or sandy soils and the Carico-Caesalpinietea class (dry forests of the Peruvian coastal desert, influenced by the maritime humidity of the cold Humboldt Current, are differentiated. Within the Acacio-Prosopidetea class, two alliances are commented: the Bursero-Prosopidion pallidae (with two new associations Loxopterygio huasanginis-Neoraimondietum arequipensis and Crotono ruiziani-Acacietum macracanthae, and the new alliance Baccharido-Jacarandion acutifoliae (with the new associations Armatocereo balsasensis-Cercidietum praecocis and Diplopterydo leiocarpae-Acacietum macracanthae. For the Opuntietea sphaericae class, the association Haageocereo versicoloris-Armatocereetum proceri (Espostoo-Neoraimondion is described on the basis of plots from hyperarid localities of central Peru. Finally, a typological classification of the studied plant communities is given.

  2. Genotoxic potential generated by biomass burning in the Brazilian Legal Amazon by Tradescantia micronucleus bioassay: a toxicity assessment study

    Directory of Open Access Journals (Sweden)

    Artaxo Paulo

    2011-05-01

    Full Text Available Abstract Background The Brazilian Amazon has suffered impacts from non-sustainable economic development, especially owing to the expansion of agricultural commodities into forest areas. The Tangará da Serra region, located in the southern of the Legal Amazon, is characterized by non-mechanized sugar cane production. In addition, it lies on the dispersion path of the pollution plume generated by biomass burning. The aim of this study was to assess the genotoxic potential of the atmosphere in the Tangará da Serra region, using Tradescantia pallida as in situ bioindicator. Methods The study was conducted during the dry and rainy seasons, where the plants were exposed to two types of exposure, active and passive. Results The results showed that in all the sampling seasons, irrespective of exposure type, there was an increase in micronucleus frequency, compared to control and that it was statistically significant in the dry season. A strong and significant relationship was also observed between the increase in micronucleus incidence and the rise in fine particulate matter, and hospital morbidity from respiratory diseases in children. Conclusions Based on the results, we demonstrated that pollutants generated by biomass burning in the Brazilian Amazon can induce genetic damage in test plants that was more prominent during dry season, and correlated with the level of particulates and elevated respiratory morbidity.

  3. Cerambycidae (Coleoptera do Museu de Zoologia da Universidade Estadual de Feira de Santana, Bahia

    Directory of Open Access Journals (Sweden)

    Ubirajara R. Martins

    2013-09-01

    Full Text Available Novas espécies em Cerambycinae são descritas do Brasil, Piauí: Compsibidion paragraphycum sp. nov. (Neoibidionini. Em Lamiinae, - do Piauí: Trichohippopsis vestita sp. nov. (Agapanthiini; Oncioderes piauiensis sp. nov. (Onciderini; Cotycicuiara caracolensis sp. nov. (Desmiphorini; Xenofrea peculiaris sp. nov. (Xenofreini; Mariliana bellula sp. nov. (Hemilophini; - da Paraíba: Ataxia arenaria sp. nov. (Pteropliini; Dadoychus atrus sp. nov. (Hemilophini. Novos registros em Cerambycinae para o Piauí: Methia longipennis Martins, 1997 (Methiini; Tropidion sipolisi (Gounelle, 1909, Compsibidion decoratum (Gounelle, 1909, Cycnidolon obliquum Martins, 1969 (Neoibidionini; - para o Ceará: Paranyssicus conspicillatus (Erichson, 1847 (Elaphidiini; Aglaoschema collorata (Napp, 1993 (Compsocerini; - para a Bahia: Stizocera phtisica Gounelle, 1909 (Elaphidiini. Novos registros em Lamiinae para o Piauí: Dolichosybra tubericollis Breuning, 1942 (Apomecynini; Ceiupaba lineata Martins & Galileo, 1998, Cicuiara striata (Bates, 1866, Desmiphora pallida Bates, 1874 (Desmiphorini; Nesozineus apharus Galileo & Martins, 1996, Psapharochrus nigrovittatus (Zajciw, 1969 (Acanthoderini; - para o Ceará: Trichohippopsis rufula Breuning, 1958 (Agapanthiini; Ataxia parva Galileo & Martins, 2011 (Pteropliini; Desmiphora cirrosa Erichson, 1847 (Desmiphorini; - para a Paraíba: Eudesmus rubefactus Bates, 1865 (Onciderini; Laraesima ochreoapicalis Breuning, 1973 (Compsosomatini; Psapharochrus itatiayensis (Melzer, 1935 (Acanthoderini; - para a Bahia: Brasiliosoma tibialis (Breuning, 1948 (Compsosomatini; Adesmus hemispilus (Germar, 1821 (Hemilophini.

  4. Molecular phylogeny of Glossodoris (Ehrenberg, 1831) nudibranchs and related genera reveals cryptic and pseudocryptic species complexes

    KAUST Repository

    Matsuda, Shayle B.; Gosliner, Terrence M.

    2017-01-01

    Chromodorid nudibranchs (Chromodorididae) are brightly coloured sea slugs that live in some of the most biodiverse and threatened coral reefs on the planet. However, the evolutionary relationships within this family have not been well understood, especially in the genus Glossodoris. Members of Glossodoris have experienced large-scale taxonomic instability over the last century and have been the subject of repeated taxonomic changes, in part due to morphological characters being the sole traditional taxonomic sources of data. Changing concepts of traditional generic boundaries based on morphology also have contributed to this instability. Despite recent advances in molecular systematics, many aspects of chromodorid taxonomy remain poorly understood, particularly at the traditional species and generic levels. In this study, 77 individuals comprising 32 previously defined species were used to build the most robust phylogenetic tree of Glossodoris and related genera using mitochondrial genes cytochrome c oxidase subunit I and 16S, and the nuclear gene 28S. Bayesian inference, maximum likelihood, and maximum parsimony analyses verify the most recent hypothesized evolutionary relationships within Glossodoris. Additionally, a pseudocryptic and cryptic species complex within Glossodoris cincta and a pseudocryptic complex within Glossodoris pallida emerged, and three new species of Doriprismatica are identified.

  5. Comparative study of anticoagulant and procoagulant properties of 28 snake venoms from families Elapidae, Viperidae, and purified Russell's viper venom-factor X activator (RVV-X).

    Science.gov (United States)

    Suntravat, Montamas; Nuchprayoon, Issarang; Pérez, John C

    2010-09-15

    Snake venoms consist of numerous molecules with diverse biological functions used for capturing prey. Each component of venom has a specific target, and alters the biological function of its target. Once these molecules are identified, characterized, and cloned; they could have medical applications. The activated clotting time (ACT) and clot rate were used for screening procoagulant and anticoagulant properties of 28 snake venoms. Crude venoms from Daboia russellii siamensis, Bothrops asper, Bothrops moojeni, and one Crotalus oreganus helleri from Wrightwood, CA, had procoagulant activity. These venoms induced a significant shortening of the ACT and showed a significant increase in the clot rate when compared to the negative control. Factor X activator activity was also measured in 28 venoms, and D. r. siamensis venom was 5-6 times higher than those of B. asper, B. moojeni, and C. o. helleri from Wrightwood County. Russell's viper venom-factor X activator (RVV-X) was purified from D. r. siamensis venom, and then procoagulant activity was evaluated by the ACT and clot rate. Other venoms, Crotalus atrox and two Naja pallida, had anticoagulant activity. A significant increase in the ACT and a significant decrease in the clot rate were observed after the addition of these venoms; therefore, the venoms were considered to have anticoagulant activity. Venoms from the same species did not always have the same ACT and clot rate profiles, but the profiles were an excellent way to identify procoagulant and anticoagulant activities in snake venoms.

  6. Techniques for characterization and eradication of potato cyst nematode: a review.

    Science.gov (United States)

    Bairwa, Aarti; Venkatasalam, E P; Sudha, R; Umamaheswari, R; Singh, B P

    2017-09-01

    Correct identification of species and pathotypes is must for eradication of potato cyst nematodes (PCN). The identification of PCN species after completing the life cycle is very difficult because it is based on morphological and morphometrical characteristics. Genetically different populations of PCN are morphologically same and differentiated based on the host differential study. Later on these traditional techniques have been replaced by biochemical techniques viz, one and two dimensional gel electrophoresis, capillary gel electrophoresis, isozymes, dot blot hybridization and isoelectric focusing etc. to distinguish both the species. One and two dimensional gel electrophoresis has used to examine inter- and intra-specific differences in proteins of Globodera rostochiensis and G. pallida . Now application of PCR and DNA based characterization techniques like RAPD, AFLP and RFLP are the important tools for differentiating inter- and intra specific variation in PCN and has given opportunities to accurate identification of PCN. For managing the PCN, till now we are following integrated pest management (IPM) strategies, however these strategies are not effective to eradicate the PCN. Therefore to eradicate the PCN we need noval management practices like RNAi (RNA interference) or Gene silencing.

  7. Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting.

    Science.gov (United States)

    Achenbach, Ute C; Tang, Xiaomin; Ballvora, Agim; de Jong, Hans; Gebhardt, Christiane

    2010-02-01

    Potato chromosome 5 harbours numerous genes for important qualitative and quantitative traits, such as resistance to the root cyst nematode Globodera pallida and the late blight fungus, Phytophthora infestans. The genes make up part of a "hot spot" for resistances to various pathogens covering a genetic map length of 3 cM between markers GP21 and GP179. We established the physical size and position of this region on chromosome 5 in potato and tomato using fluorescence in situ hybridization (FISH) on pachytene chromosomes. Five potato bacterial artificial chromosome (BAC) clones with the genetically anchored markers GP21, R1-contig (proximal end), CosA, GP179, and StPto were selected, labeled with different fluorophores, and hybridized in a five-colour FISH experiment. Our results showed the location of the BAC clones in the middle of the long arm of chromosome 5 in both potato and tomato. Based on chromosome measurements, we estimate the physical size of the GP21-GP179 interval at 0.85 Mb and 1.2 Mb in potato and tomato, respectively. The GP21-GP179 interval is part of a genome segment known to have inverted map positions between potato and tomato.

  8. Molecular identification of the Sporothrix schenckii complex.

    Science.gov (United States)

    Oliveira, Manoel Marques Evangelista; Almeida-Paes, Rodrigo; Gutierrez-Galhardo, Maria Clara; Zancope-Oliveira, Rosely M

    2014-01-01

    Sporothrix schenckii, an ascomycetous dimorphic organism that for over a century was recognized as the sole agent of sporotrichosis, a subcutaneous mycosis with a worldwide distribution. However, it has been proposed, based on physiologic and molecular aspects, that S. schenckii is a complex of distinct species: Sporothrix brasiliensis, Sporothrix mexicana, Sporothrix globosa, S. schenckii sensu strictu, Sporothrix luriei, and Sporothrix albicans (formerly Sporothrix pallida). Human disease has a broad range of clinical manifestations and can be classified into fixed cutaneous, lymphocutaneous, disseminated cutaneous, and extracutaneous sporotrichosis. The gold standard for the diagnosis of sporotrichosis is the culture; however, serologic, histopathologic and molecular approaches have been recently adopted for the diagnosis of this mycosis. Few molecular methods have been applied to the diagnosis of sporotrichosis to detect S. schenckii DNA from clinical specimens, and to identify Sporothrix spp. in culture. Until now, Sporothrix is the unique clinically relevant dimorphic fungus without an elucidated genome sequence, thus limiting molecular knowledge about the cryptic species of this complex, and the sexual form of all S. schenckii complex species. In this review we shall focus on the current diagnosis of the sporotrichosis, and discuss the current molecular tools applied to the diagnosis and identification of the Sporothrix complex species. This manuscript is part of the series of works presented at the "V International Workshop: Molecular genetic approaches to the study of human pathogenic fungi" (Oaxaca, Mexico, 2012). Copyright © 2013 Revista Iberoamericana de Micología. Published by Elsevier Espana. All rights reserved.

  9. Isolation, biosynthesis and biological activity of alkaloids of Tylophora asthmatica, a versatile medicinal plant

    International Nuclear Information System (INIS)

    Mulchandani, N.B.

    1987-01-01

    Tylophorine and related new alkaloids have been isolated from Tylophora asthmatics, Pergularia pallida and Ficus hispida plants. Biosynthesis of this group of alkaloids has been carried out using various labelled precursors for the first time and from the systematic degradation of the isolated radiolabelled tylophorine, it has been concluded that these alkaloids arise from one molecule each of tyrosine, phenylalanine and ornithine. The interactions of Tylophora alkaloids particularly tylophorinidine with biomolecules such as lysozyme and bovine serum albumin have also been studied and binding characteristics determined. It was found that Tylophora alkaloid extract possesses antianaphylactic activity as observed in passive peritoneal anaphylaxis in rats. The drug also possessed mild antihistaminic and anticholinergic activities. Studies of the extract on the bronchial smooth muscle both in vivo and in vitro did not reveal bronchiodilator potential of the drug. In addition, the distribution and metabolism of the drug was studied in vivo using 14 C radiolabelled alkaloids prepared by biosynthetic method. This study further revealed its usefulness since the drug is absorbed by vital organs and also it is not metabolised into fragments which could cause some other damage. Tylophora alkaloids have also been found to be anti-mutagenic. 10 tables, 5 figures, 24 refs. (author)

  10. Environmental monitoring to the sources of atmospheric emission by the Trad-MCN bioassay and analysis of the accumulative potential for uranium and fluoride

    International Nuclear Information System (INIS)

    Machado, Alessandra C.F.E.; Ramos, Monique M.B.; Alves, Edenise S.

    2009-01-01

    The biomonitoring of the atmospheric contamination constitutes important procedure for adoption of environmental control measures. Biological assays have been employed to evaluate genotoxic agents in the atmosphere. The Tradescantia-micronucleus (Trad-MCN) assay has been extensively used in environmental monitoring owing to its efficiency in the detection of chromosomic damages in cytological preparations of easy execution. In this study we tested the viability of use of Trad-MCN with Tradescantia pallida cv. Purpurea for environmental monitoring in the Experimental Center Aramar (CEA), in Ipero - SP and its leaf accumulation capacity. The plants were exposed in situ, in flower-beds or flowerpots, established close to the sources of atmospheric emission. The bioassay was accomplished according to the usual protocol. The micronucleus frequencies were compared using the variance Kruskal-Wallis test. The obtained results indicated that the biomonitoring model adopted was not the ideal for the CEA, considering that the plant suffered the influence of climatic condition. However the plant showed to have accumulative potential for uranium. (author)

  11. Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues.

    Science.gov (United States)

    Nicosia, Aldo; Bennici, Carmelo; Biondo, Girolama; Costa, Salvatore; Di Natale, Marilena; Masullo, Tiziana; Monastero, Calogera; Ragusa, Maria Antonietta; Tagliavia, Marcello; Cuttitta, Angela

    2018-01-11

    Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis . The release of the genome sequence of Acropora digitifera , Exaiptasia pallida , Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. A comparison among TCTP members from Cnidaria and Bilateria showed conserved intron exon organization, evolutionary conserved TCTP signatures and 3D protein structure. The pattern of mRNA expression profile was also defined in A. viridis . These analyses revealed a constitutive mRNA expression especially in tissues with active proliferation. Additionally, the transcriptional profile of A. viridis TCTP ( AvTCTP ) after challenges with different abiotic/biotic stresses showed induction by extreme temperatures, heavy metals exposure and immune stimulation. These results suggest the involvement of AvTCTP in the sea anemone defensome taking part in environmental stress and immune responses.

  12. Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues

    Directory of Open Access Journals (Sweden)

    Aldo Nicosia

    2018-01-01

    Full Text Available Gene family encoding translationally controlled tumour protein (TCTP is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. A comparison among TCTP members from Cnidaria and Bilateria showed conserved intron exon organization, evolutionary conserved TCTP signatures and 3D protein structure. The pattern of mRNA expression profile was also defined in A. viridis. These analyses revealed a constitutive mRNA expression especially in tissues with active proliferation. Additionally, the transcriptional profile of A. viridis TCTP (AvTCTP after challenges with different abiotic/biotic stresses showed induction by extreme temperatures, heavy metals exposure and immune stimulation. These results suggest the involvement of AvTCTP in the sea anemone defensome taking part in environmental stress and immune responses.

  13. A phytosociological analysis and synopsis of the dry woodlands and succulent vegetation of the Peruvian Andes.

    Science.gov (United States)

    Galán-DE-Mera, Antonio; Sánchez-Vega, Isidoro; Linares-Perea, Eliana; Campos, José; Montoya, Juan; Vicente-Orellana, José A

    2016-01-01

    A phytosociological approach to dry forest and cactus communities on the occidental slopes of the Peruvian Andes is presented in base of 164 plots carried out following the Braun-Blanquet method. From them, 52 have been made recently, and the other 112 were taken from the literature. After a multivariate analysis, using a hierarchical clustering and a detendred correspondence analysis, the Acacio-Prosopidetea class (dry forest and cactus communities, developed on soils with some edaphic humidity or precipitations derived from El Niño Current), the Opuntietea sphaericae class (cactus communities of central and southern Peru, on few stabilized rocky or sandy soils) and the Carico-Caesalpinietea class (dry forests of the Peruvian coastal desert, influenced by the maritime humidity of the cold Humboldt Current), are differentiated. Within the Acacio-Prosopidetea class, two alliances are commented: the Bursero-Prosopidion pallidae (with two new associations Loxopterygio huasanginis-Neoraimondietum arequipensis and Crotono ruiziani-Acacietum macracanthae), and the new alliance Baccharido-Jacarandion acutifoliae (with the new associations Armatocereo balsasensis-Cercidietum praecocis and Diplopterydo leiocarpae-Acacietum macracanthae). For the Opuntietea sphaericae class, the association Haageocereo versicoloris-Armatocereetum proceri (Espostoo-Neoraimondion) is described on the basis of plots from hyperarid localities of central Peru. Finally, a typological classification of the studied plant communities is given.

  14. Non-experimental validation of ethnoveterinary plants and indigenous knowledge used for backyard pigs and chickens in Trinidad and Tobago.

    Science.gov (United States)

    Lans, C; Georges, K; Brown, G

    2007-06-01

    This paper presents the findings of an exploratory study on ethnoveterinary medicines used for backyard pigs and backyard chickens in Trinidad and Tobago. Research data was collected from 1995 to September 2000. Six plants are used for backyard pigs. Crushed leaves of immortelle (Erythrina pallida, E. micropteryx) are used to remove dead piglets from the uterus. Leaf decoctions of bois canôt (Cecropia peltata) and bamboo (Bambusa vulgaris) are used for labour pains or leaves are fed as a postpartum cleanser. Boiled green papaya fruit (Carica papaya) is fed to pigs to induce milk let-down. The leaves and flowers of male papaya plants (Carica papaya) are fed to deworm pigs. Sour orange juice (Citrus aurantium) is given to pigs to produce lean meat, and coffee grounds are used for scours. Eyebright and plantain leaves (Plantago major) are used for eye injuries of backyard chickens. Worm grass (Chenopodium ambrosioides) and cotton bush (Gossypium species) are used as anthelmintics. Aloe gel (Aloe vera) is used for internal injuries and the yellow sap from the cut Aloe vera leaf or the juice of Citrus limonia is used to purge the birds. A literature review revealed few toxicity concerns and the potential usefulness of the plants.

  15. Modiolarca lateralis (Pteryomorphia: Mytilidae: bivalve associated to six species of ascidians from Bocas del Toro, Panama

    Directory of Open Access Journals (Sweden)

    Juan I Cañete

    2013-11-01

    Full Text Available We describe the presence of the bivalve Modiolarca lateralis (Say, 1822 in six tropical ascidians Ascidia curvata, A. sydneiensis, A. panamensis, A. interrupta, Herdmania pallida and Polycarpa spongiabilis collected at depths of 1-3 m on coral reefs, mangrove roots and dock supports in Almirante Bay, Bocas del Toro, Panama (9°18'N, 82°13'W during June-July 2011. Bivalve prevalence varied between 9-30% across species, but was mainly associated with A. panamensis, P. spongiabilis and A. interrupta. Prevalence seems to be influenced by tunic thickness rather than by the ascidian size. Bivalves varied in size (0.6-11 mm shell length, with the smallest individual found in A. sydneiensis. There were only one or two bivalves per ascidians, although a maximum of 18 was found in one A. panamensis. M. lateralis seems to behave similarly to its temperate counterparts: it has a variety of hosts, occurs mainly in the anterior region of the ascidians, and has a variable abundance per host.

  16. Reproducción y alimentación de Phytotoma raimondii, cortarrama peruana en El Gramadal, Ancash

    Directory of Open Access Journals (Sweden)

    Mario Rosina

    2012-11-01

    Full Text Available Se confirma la existencia de un buen hábitat con buena disponibilidad de alimento y de sitios para reproducción de la cortarrama peruana en El Gramadal (Huarmey. Las dos especies más importantes para su alimentación “algarrobo” (Prosopis pallida y “palo negro” (Grabowskia boerhaviifolia, se encuentran en suficiente cantidad en el lugar. Esta última planta también es crucial para la reproducción, ya que todos los nidos hallados fueron construidos en esta especie. Hasta el momento se han encontrado nueve nidos entre los años 2010 y 2012 entre diciembre y abril: siete nidos activos, 2 el 2010 (abril, 4 el 2011, (marzo y diciembre y uno el 2012 (enero. También se encontraron dos nidos vacíos el 2011 (marzo y junio, además de volantones e individuos juveniles desde diciembre a junio.

  17. SPRYSEC effectors: a versatile protein-binding platform to disrupt plant innate immunity

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    Amalia Diaz-Granados

    2016-10-01

    Full Text Available Persistent infections by sedentary plant-parasitic nematodes are a major threat to important food crops all over the world. These round worms manipulate host plant cell morphology and physiology to establish sophisticated feeding structures. Key modifications to plant cells during their transition into feeding structures are largely attributed to the activity of effectors secreted by the nematodes. The SPRYSEC effectors were initially identified in the potato cyst nematodes Globodera rostochiensis and G. pallida, and are characterized by a single SPRY domain, a non-catalytic domain present in modular proteins with different functions. The SPRY domain is wide-spread among eukaryotes and thought to be involved in mediating protein-protein interactions. Thus far, the SPRY domain is only reported as a functional domain in effectors of plant-parasitic nematodes, but not of other plant pathogens. SPRYSEC effectors have been implicated in both suppression and activation of plant immunity, but other possible roles in nematode virulence remain undefined. Here, we review the latest reports on the structure, function, and sequence diversity of SPRYSEC effectors, which provide support for a model featuring these effectors as a versatile protein-binding platform for the nematodes to target a wide range of host proteins during parasitism.

  18. Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes.

    Science.gov (United States)

    Eves-van den Akker, Sebastian; Lilley, Catherine J; Jones, John T; Urwin, Peter E

    2014-09-01

    Sedentary endoparasitic nematodes are obligate biotrophs that modify host root tissues, using a suite of effector proteins to create and maintain a feeding site that is their sole source of nutrition. Using assumptions about the characteristics of genes involved in plant-nematode biotrophic interactions to inform the identification strategy, we provide a description and characterisation of a novel group of hyper-variable extracellular effectors termed HYP, from the potato cyst nematode Globodera pallida. HYP effectors comprise a large gene family, with a modular structure, and have unparalleled diversity between individuals of the same population: no two nematodes tested had the same genetic complement of HYP effectors. Individuals vary in the number, size, and type of effector subfamilies. HYP effectors are expressed throughout the biotrophic stages in large secretory cells associated with the amphids of parasitic stage nematodes as confirmed by in situ hybridisation. The encoded proteins are secreted into the host roots where they are detectable by immunochemistry in the apoplasm, between the anterior end of the nematode and the feeding site. We have identified HYP effectors in three genera of plant parasitic nematodes capable of infecting a broad range of mono- and dicotyledon crop species. In planta RNAi targeted to all members of the effector family causes a reduction in successful parasitism.

  19. Superoxide Dismutase as a Tool for the Mulacular Identification of Plant Parasitic Nematodes

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    S. Molinari

    2004-08-01

    Full Text Available Superoxide dismutase (SOD is a constitutive family of enzymes produced by all aerobic organisms. Varying amounts of SOD activity have been found at all life stages of the most diffused plant parasitic nematodes. SOD is important to aerobic metabolism and parasitism of nematodes in that it catalyzes the first step of the neutralization of the highly toxic superoxide anion (O2 •-, which is largely produced in plant-nematode incompatible reactions. SOD has also been shown to be a significant tool to diagnose root-knot, cyst-, and longidorid nematodes. A high SOD polymorphism has been revealed by Native-Page on gradient polyacrylamide gels for Meloidogyne spp. and by isoelectrofocusing for Globodera, Xiphinema and Longidorus spp. The sensitivity of such procedures has been improved by using the PhastSystem (Amersham Biosciences, Piscata, NJ, USA, an automated equipment for electrophoresis. An accurate discrimination of species of all the nematode genera tested has been achieved and an attempt was made to group populations of the Xiphinema americanum-group and to detect Globodera rostochiensis and G. pallida pathotypes.

  20. Molecular aspects of cyst nematodes.

    Science.gov (United States)

    Lilley, Catherine J; Atkinson, Howard J; Urwin, Peter E

    2005-11-01

    SUMMARY Taxonomy: Superkingdom Eukaryota; kingdom Metazoa; phylum Nematoda; class Chromadorea; order Tylenchida; suborder Tylenchina; superfamily Tylenchoidea; family Heteroderidae; subfamily Heteroderinae; main genera Heterodera and Globodera. Cyst nematodes comprise approximately 100 known species in six genera. They are pathogens of temperate, subtropical and tropical plant species and the host range of many species is narrow. The most economically important species are within the Globodera and Heterodera genera. Globodera pallida and G. rostochiensis are important pathogens of potato crops. There are many economic species in the Heterodera genus, including Heterodera glycines (soybean cyst nematode), H. avenae (cereal cyst nematode) and H. schachtii (sugar beet cyst nematode), the last of which attacks a range of Chenopodiaceae and Cruciferae, including Arabidopsis thaliana. Disease symptoms: Field symptoms of severe cyst nematode infection are often stunting, wilting and chlorosis, but considerable yield loss can occur without obvious symptoms. The only unique indicator of cyst nematode infection is the presence of adult female nematodes attached to host roots after several weeks of parasitism. Disease control: This is usually achieved by using integrated pest management involving cultural practices such as crop rotation, resistant cultivars if available and chemical control when economically justified.

  1. Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes.

    Directory of Open Access Journals (Sweden)

    Sebastian Eves-van den Akker

    2014-09-01

    Full Text Available Sedentary endoparasitic nematodes are obligate biotrophs that modify host root tissues, using a suite of effector proteins to create and maintain a feeding site that is their sole source of nutrition. Using assumptions about the characteristics of genes involved in plant-nematode biotrophic interactions to inform the identification strategy, we provide a description and characterisation of a novel group of hyper-variable extracellular effectors termed HYP, from the potato cyst nematode Globodera pallida. HYP effectors comprise a large gene family, with a modular structure, and have unparalleled diversity between individuals of the same population: no two nematodes tested had the same genetic complement of HYP effectors. Individuals vary in the number, size, and type of effector subfamilies. HYP effectors are expressed throughout the biotrophic stages in large secretory cells associated with the amphids of parasitic stage nematodes as confirmed by in situ hybridisation. The encoded proteins are secreted into the host roots where they are detectable by immunochemistry in the apoplasm, between the anterior end of the nematode and the feeding site. We have identified HYP effectors in three genera of plant parasitic nematodes capable of infecting a broad range of mono- and dicotyledon crop species. In planta RNAi targeted to all members of the effector family causes a reduction in successful parasitism.

  2. Novel RNA viruses within plant parasitic cyst nematodes.

    Science.gov (United States)

    Ruark, Casey L; Gardner, Michael; Mitchum, Melissa G; Davis, Eric L; Sit, Tim L

    2018-01-01

    The study of invertebrate-and particularly nematode-viruses is emerging with the advancement of transcriptome sequencing. Five single-stranded RNA viruses have now been confirmed within the economically important soybean cyst nematode (SCN; Heterodera glycines). From previous research, we know these viruses to be widespread in greenhouse and field populations of SCN. Several of the SCN viruses were also confirmed within clover (H. trifolii) and beet (H. schachtii) cyst nematodes. In the presented study, we sequenced the transcriptomes of several inbred SCN populations and identified two previously undiscovered viral-like genomes. Both of these proposed viruses are negative-sense RNA viruses and have been named SCN nyami-like virus (NLV) and SCN bunya-like virus (BLV). Finally, we analyzed publicly available transcriptome data of two potato cyst nematode (PCN) species, Globodera pallida and G. rostochiensis. From these data, a third potential virus was discovered and called PCN picorna-like virus (PLV). PCN PLV is a positive-sense RNA virus, and to the best of our knowledge, is the first virus described within PCN. The presence of these novel viruses was confirmed via qRT-PCR, endpoint PCR, and Sanger sequencing with the exception of PCN PLV due to quarantine restrictions on the nematode host. While much work needs to be done to understand the biological and evolutionary significance of these viruses, they offer insight into nematode ecology and the possibility of novel nematode management strategies.

  3. Nematode neuropeptides as transgenic nematicides.

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    Neil D Warnock

    2017-02-01

    Full Text Available Plant parasitic nematodes (PPNs seriously threaten global food security. Conventionally an integrated approach to PPN management has relied heavily on carbamate, organophosphate and fumigant nematicides which are now being withdrawn over environmental health and safety concerns. This progressive withdrawal has left a significant shortcoming in our ability to manage these economically important parasites, and highlights the need for novel and robust control methods. Nematodes can assimilate exogenous peptides through retrograde transport along the chemosensory amphid neurons. Peptides can accumulate within cells of the central nerve ring and can elicit physiological effects when released to interact with receptors on adjoining cells. We have profiled bioactive neuropeptides from the neuropeptide-like protein (NLP family of PPNs as novel nematicides, and have identified numerous discrete NLPs that negatively impact chemosensation, host invasion and stylet thrusting of the root knot nematode Meloidogyne incognita and the potato cyst nematode Globodera pallida. Transgenic secretion of these peptides from the rhizobacterium, Bacillus subtilis, and the terrestrial microalgae Chlamydomonas reinhardtii reduce tomato infection levels by up to 90% when compared with controls. These data pave the way for the exploitation of nematode neuropeptides as a novel class of plant protective nematicide, using novel non-food transgenic delivery systems which could be deployed on farmer-preferred cultivars.

  4. Annotated type catalogue of the Orthalicoidea (Mollusca, Gastropoda) in the Museum für Naturkunde, Berlin.

    Science.gov (United States)

    Breure, Abraham S H

    2013-01-01

    The type status is described of 96 taxa classified within the superfamily Orthalicoidea and present in the Mollusca collection of the Museum für Naturkunde der Humboldt-Universität zu Berlin. Lectotypes are designated for the following taxa: Orthalicus elegans Rolle, 1895; Bulimus maranhonensis Albers, 1854; Orthalicus nobilis Rolle, 1895; Orthalichus tricinctus Martens, 1893. Orthalicus sphinx tresmariae is introduced as new name for Zebra sphinx turrita Strebel, 1909, not Zebra quagga turrita Strebel, 1909. The following synonyms are established: Zebra crosseifischeri Strebel, 1909 = Orthalicus princeps fischeri Martens, 1893; Orthalicus isabellinus Martens, 1873 = Orthalicus bensoni (Reeve, 1849); Zebra zoniferus naesiotes Strebel, 1909 = Orthalicus undatus (Bruguière, 1789); Porphyrobaphe (Myiorthalicus) dennisoni pallida Strebel, 1909 = Hemibulimus dennisoni (Reeve, 1848); Zebra delphinus pumilio Strebel, 1909 = Orthalicus delphinus (Strebel, 1909); Orthalicus (Laeorthalicus) reginaeformis Strebel, 1909 = Corona perversa (Swainson, 1821); Bulimus (Eurytus) corticosus Sowerby III, 1895 = Plekocheilus (Eurytus) stuebeli Martens, 1885. The taxon Bulimus (Eudioptus) psidii Martens, 1877 is now placed within the family Sagdidae, tentatively in the genus Platysuccinea. Appendices are included with an index to all the types of Orthalicoidea extant (including those listed by Köhler 2007) and a partial list of letters present in the correspondence archives.

  5. Characterization of the gacA-dependent surface and coral mucus colonization by an opportunistic coral pathogen Serratia marcescens PDL100.

    Science.gov (United States)

    Krediet, Cory J; Carpinone, Emily M; Ritchie, Kim B; Teplitski, Max

    2013-05-01

    Opportunistic pathogens rely on global regulatory systems to assess the environment and to control virulence and metabolism to overcome host defenses and outcompete host-associated microbiota. In Gammaproteobacteria, GacS/GacA is one such regulatory system. GacA orthologs direct the expression of the csr (rsm) small regulatory RNAs, which through their interaction with the RNA-binding protein CsrA (RsmA), control genes with functions in carbon metabolism, motility, biofilm formation, and virulence. The csrB gene was controlled by gacA in Serratia marcescens PDL100. A disruption of the S. marcescens gacA gene resulted in an increased fitness of the mutant on mucus of the host coral Acropora palmata and its high molecular weight fraction, whereas the mutant was as competitive as the wild type on the low molecular weight fraction of the mucus. Swarming motility and biofilm formation were reduced in the gacA mutant. This indicates a critical role for gacA in the efficient utilization of specific components of coral mucus and establishment within the surface mucopolysaccharide layer. While significantly affecting early colonization behaviors (coral mucus utilization, swarming motility, and biofilm formation), gacA was not required for virulence of S. marcescens PDL100 in either a model polyp Aiptasia pallida or in brine shrimp Artemia nauplii. © 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  6. Molecular phylogeny of Glossodoris (Ehrenberg, 1831) nudibranchs and related genera reveals cryptic and pseudocryptic species complexes

    KAUST Repository

    Matsuda, Shayle B.

    2017-03-01

    Chromodorid nudibranchs (Chromodorididae) are brightly coloured sea slugs that live in some of the most biodiverse and threatened coral reefs on the planet. However, the evolutionary relationships within this family have not been well understood, especially in the genus Glossodoris. Members of Glossodoris have experienced large-scale taxonomic instability over the last century and have been the subject of repeated taxonomic changes, in part due to morphological characters being the sole traditional taxonomic sources of data. Changing concepts of traditional generic boundaries based on morphology also have contributed to this instability. Despite recent advances in molecular systematics, many aspects of chromodorid taxonomy remain poorly understood, particularly at the traditional species and generic levels. In this study, 77 individuals comprising 32 previously defined species were used to build the most robust phylogenetic tree of Glossodoris and related genera using mitochondrial genes cytochrome c oxidase subunit I and 16S, and the nuclear gene 28S. Bayesian inference, maximum likelihood, and maximum parsimony analyses verify the most recent hypothesized evolutionary relationships within Glossodoris. Additionally, a pseudocryptic and cryptic species complex within Glossodoris cincta and a pseudocryptic complex within Glossodoris pallida emerged, and three new species of Doriprismatica are identified.

  7. Assessing the spatial pattern of a river water quality in southern Brazil by multivariate analysis of biological and chemical indicators

    Directory of Open Access Journals (Sweden)

    M. B. B. Cassanego

    Full Text Available Abstract This study assessed the genotoxicity and chemical quality of the Rio dos Sinos, southern Brazil. During two years, bimonthly, cuttings of Tradescantia pallida var. purpurea with flower buds were exposed to river water samples from Caraá, Santo Antônio da Patrulha, Taquara and Campo Bom, which are municipalities located in the upper, middle and lower stretches of the Rio dos Sinos basin. Simultaneously, chemical parameters were analyzed, rainfall data were surveyed and negative (distilled water and positive (0.1% formaldehyde controls were made. Micronuclei (MCN frequencies were determined in tetrads of pollen grain mother cells. From the upper stretch toward the lower, there was an increase in the frequency of MCN and in concentrations of chemical parameters. Cadmium, lead, copper, total chromium and zinc were present at the four sites and a concentration gradient was not demonstrated along the river. The multivariate analysis revealed that two principal components exist, which accounted for 62.3% of the observed variances. Although genotoxicity was observed in Santo Antônio da Patrulha, the water presented higher mean values for most of the assessed parameters, in the lower stretch, where urbanization and industrialization are greater. The spatial and temporal pattern of water quality observed reinforces the importance of considering the environmental factors and their effects on organisms in an integrated way in watercourse monitoring programs.

  8. Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

    KAUST Repository

    Cziesielski, Maha J.

    2018-04-18

    Corals and their endosymbiotic dinoflagellates of the genus Symbiodinium have a fragile relationship that breaks down under heat stress, an event known as bleaching. However, many coral species have adapted to high temperature environments such as the Red Sea (RS). To investigate mechanisms underlying temperature adaptation in zooxanthellate cnidarians we compared transcriptome- and proteome-wide heat stress response (24 h at 32°C) of three strains of the model organism Aiptasia pallida from regions with differing temperature profiles; North Carolina (CC7), Hawaii (H2) and the RS. Correlations between transcript and protein levels were generally low but inter-strain comparisons highlighted a common core cnidarian response to heat stress, including protein folding and oxidative stress pathways. RS anemones showed the strongest increase in antioxidant gene expression and exhibited significantly lower reactive oxygen species (ROS) levels in hospite However, comparisons of antioxidant gene and protein expression between strains did not show strong differences, indicating similar antioxidant capacity across the strains. Subsequent analysis of ROS production in isolated symbionts confirmed that the observed differences of ROS levels in hospite were symbiont-driven. Our findings indicate that RS anemones do not show increased antioxidant capacity but may have adapted to higher temperatures through association with more thermally tolerant symbionts.

  9. Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

    KAUST Repository

    Cziesielski, Maha J.; Liew, Yi Jin; Cui, Guoxin; Schmidt-Roach, Sebastian; Campana, Sara; Marondedze, Claudius; Aranda, Manuel

    2018-01-01

    Corals and their endosymbiotic dinoflagellates of the genus Symbiodinium have a fragile relationship that breaks down under heat stress, an event known as bleaching. However, many coral species have adapted to high temperature environments such as the Red Sea (RS). To investigate mechanisms underlying temperature adaptation in zooxanthellate cnidarians we compared transcriptome- and proteome-wide heat stress response (24 h at 32°C) of three strains of the model organism Aiptasia pallida from regions with differing temperature profiles; North Carolina (CC7), Hawaii (H2) and the RS. Correlations between transcript and protein levels were generally low but inter-strain comparisons highlighted a common core cnidarian response to heat stress, including protein folding and oxidative stress pathways. RS anemones showed the strongest increase in antioxidant gene expression and exhibited significantly lower reactive oxygen species (ROS) levels in hospite However, comparisons of antioxidant gene and protein expression between strains did not show strong differences, indicating similar antioxidant capacity across the strains. Subsequent analysis of ROS production in isolated symbionts confirmed that the observed differences of ROS levels in hospite were symbiont-driven. Our findings indicate that RS anemones do not show increased antioxidant capacity but may have adapted to higher temperatures through association with more thermally tolerant symbionts.

  10. Biotechnological production of caffeic acid derivatives from cell and organ cultures of Echinacea species.

    Science.gov (United States)

    Murthy, Hosakatte Niranjana; Kim, Yun-Soo; Park, So-Young; Paek, Kee-Yoeup

    2014-09-01

    Caffeic acid derivatives (CADs) are a group of bioactive compounds which are produced in Echinacea species especially Echinacea purpurea, Echinacea angustifolia, and Echinacea pallida. Echinacea is a popular herbal medicine used in the treatment of common cold and it is also a prominent dietary supplement used throughout the world. Caffeic acid, chlorogenic acid (5-O-caffeoylquinic acid), caftaric acid (2-O-caffeoyltartaric acid), cichoric acid (2, 3-O-dicaffeoyltartaric acid), cynarin, and echinacoside are some of the important CADs which have varied pharmacological activities. The concentrations of these bioactive compounds are species specific and also they vary considerably with the cultivated Echinacea species due to geographical location, stage of development, time of harvest, and growth conditions. Due to these reasons, plant cell and organ cultures have become attractive alternative for the production of biomass and caffeic acid derivatives. Adventitious and hairy roots have been induced in E. pupurea and E. angustifolia, and suspension cultures have been established from flask to bioreactor scale for the production of biomass and CADs. Tremendous progress has been made in this area; various bioprocess methods and strategies have been developed for constant high-quality productivity of biomass and secondary products. This review is aimed to discuss biotechnological methods and approaches employed for the sustainable production of CADs.

  11. New xenophytes from La Palma (Canary Islands, Spain, with emphasis on naturalized and (potentially invasive species

    Directory of Open Access Journals (Sweden)

    R. Otto

    2016-07-01

    Full Text Available Many years of field work in La Palma (western Canary Islands yielded a number of interesting new records of non-native vascular plants. Amaranthus blitoides, A. deflexus, Aptenia cordifolia, Argemone ochroleuca, Begonia schmidtiana, Capsella rubella, Cardamine hamiltonii, Centratherum punctatum, Cerastium fontanum subsp. vulgare, Chasmanthe floribunda (widely confused with C. aethiopica and Crocosmia xcrocosmiiflora in Macaronesia, Chenopodium probstii, Commelina latifolia var. latifolia, Dichondra micrantha, Dysphania anthelmintica, Epilobium ciliatum, Erigeron sumatrensis, Erodium neuradifolium, Eucalyptus globulus, Euphorbia hypericifolia, E. maculata, Gamochaeta antillana, Geranium pyrenaicum, Hedychium coronarium, Hypochaeris radicata, Kalanchoe daigremontiana, K. delagoensis, K. xhoughtonii, Kickxia commutata subsp. graeca, K. spuria subsp. integrifolia, Lactuca viminea subsp. ramosissima, Landoltia punctata, Malvastrum coromandelianum subsp. capitatospicatum, Oenothera jamesii, Orobanche nana, Oxalis latifolia, Papaver hybridum, P. setigerum, Pilea microphylla, Podranea ricasoliana, Polygonum arenastrum, Portulaca granulatostellulata, P. nicaraguensis, P. nitida, P. papillatostellulata, Rumex crispus subsp. crispus, R. pulcher subsp. pulcher, R. xpratensis, Sechium edule, Sida spinosa var. angustifolia, Silene nocturna, Solanum abutiloides, S. alatum, S. decipiens, Sonchus tenerrimus, Spergularia marina, Stellaria pallida, Tragopogon porrifolius subsp. australis, Tribulus terrestris and Trifolium repens subsp. repens are naturalized or (potentially invasive xenophytes, reported for the first time from either the Canary Islands or from La Palma. 37 additional, presumably ephemeral taxa are reported for the first time from the Canary Islands, whereas 56 ephemeral taxa are new for La Palma..

  12. Activity of pyrrolizidine alkaloids against biofilm formation and Trichomonas vaginalis.

    Science.gov (United States)

    da Silva Negreiros Neto, Themístocles; Gardner, Dale; Hallwass, Fernando; Leite, Ana Jéssica Matias; de Almeida, Camila Guimarães; Silva, Laura Nunes; de Araújo Roque, Alan; de Bitencourt, Fernanda Gobbi; Barbosa, Euzébio Guimarães; Tasca, Tiana; Macedo, Alexandre José; de Almeida, Mauro Vieira; Giordani, Raquel Brandt

    2016-10-01

    Crotalaria genus belongs to the subfamily Papilionoideae comprising about 600 species spread throughout tropical, neotropical and subtropical regions. In this study, seeds of Crolatalaria pallida were used to the isolation of usaramine, a pyrrolizidine alkaloid. Thus, Pseudomonas aeruginosa and Staphylococcus epidermidis were utilized as strains to test some activities of this alkaloid, such as antibiofilm and antibacterial. Meanwhile, monocrotaline obtained from Crotalaria retusa seeds, was used as the starting material for synthesis of necine base derivatives with anti-Trichomonas vaginalis potential. Alkaloids were characterized by 1D and 2D NMR techniques and GC-MS analysis. Usaramine demonstrated a highlighted antibiofilm activity against S. epidermidis by reducing more than 50% of biofilm formation without killing the bacteria, thus it could be assumed as a prototype for the development of new antibiofilm molecules for pharmaceutical and industrial purposes. Monocrotaline activity against T. vaginalis was evaluated and results indicated inhibition of 80% on parasite growth at 1mg/mL, in addition, neither cytotoxicity against vaginal epithelial cells nor hemolytic activity were observed. On the other hand, retronecine showed no anti-T. vaginalis activity while azido-retronecine was more active than monocrotaline killing 85% of the parasites at 1mg/mL. In conclusion, pyrrolizidine alkaloids are suggested as promising prototypes for new drugs especially for topical use. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  13. Epipodial Tentacle Gene Expression and Predetermined Resilience to Summer Mortality in the Commercially Important Greenlip Abalone, Haliotis laevigata.

    Science.gov (United States)

    Shiel, Brett P; Hall, Nathan E; Cooke, Ira R; Robinson, Nicholas A; Strugnell, Jan M

    2017-04-01

    "Summer mortality" is a phenomenon that occurs during warm water temperature spikes that results in the mass mortality of many ecologically and economically important mollusks such as abalone. This study aimed to determine whether the baseline gene expression of abalone before a laboratory-induced summer mortality event was associated with resilience to summer mortality. Tentacle transcriptomes of 35 greenlip abalone (Haliotis laevigata) were sequenced prior to the animals being exposed to an increase in water temperature-simulating conditions which have previously resulted in summer mortality. Abalone derived from three source locations with different environmental conditions were categorized as susceptible or resistant to summer mortality depending on whether they died or survived after the water temperature was increased. We detected two genes showing significantly higher expression in resilient abalone relative to susceptible abalone prior to the laboratory-induced summer mortality event. One of these genes was annotated through the NCBI non-redundant protein database using BLASTX to an anemone (Exaiptasia pallida) Transposon Ty3-G Gag Pol polyprotein. Distinct gene expression signatures were also found between resilient and susceptible abalone depending on the population origin, which may suggest divergence in local adaptation mechanisms for resilience. Many of these genes have been suggested to be involved in antioxidant and immune-related functions. The identification of these genes and their functional roles have enhanced our understanding of processes that may contribute to summer mortality in abalone. Our study supports the hypothesis that prestress gene expression signatures are indicative of the likelihood of summer mortality.

  14. Evaluation of antihyperglycemia and antihypertension potential of native Peruvian fruits using in vitro models.

    Science.gov (United States)

    Pinto, Marcia Da Silva; Ranilla, Lena Galvez; Apostolidis, Emmanouil; Lajolo, Franco Maria; Genovese, Maria Inés; Shetty, Kalidas

    2009-04-01

    Local food diversity and traditional crops are essential for cost-effective management of the global epidemic of type 2 diabetes and associated complications of hypertension. Water and 12% ethanol extracts of native Peruvian fruits such as Lucuma (Pouteria lucuma), Pacae (Inga feuille), Papayita arequipeña (Carica pubescens), Capuli (Prunus capuli), Aguaymanto (Physalis peruviana), and Algarrobo (Prosopis pallida) were evaluated for total phenolics, antioxidant activity based on 2, 2-diphenyl-1-picrylhydrazyl radical scavenging assay, and functionality such as in vitro inhibition of alpha-amylase, alpha-glucosidase, and angiotensin I-converting enzyme (ACE) relevant for potential management of hyperglycemia and hypertension linked to type 2 diabetes. The total phenolic content ranged from 3.2 (Aguaymanto) to 11.4 (Lucuma fruit) mg/g of sample dry weight. A significant positive correlation was found between total phenolic content and antioxidant activity for the ethanolic extracts. No phenolic compound was detected in Lucuma (fruit and powder) and Pacae. Aqueous extracts from Lucuma and Algarrobo had the highest alpha-glucosidase inhibitory activities. Papayita arequipeña and Algarrobo had significant ACE inhibitory activities reflecting antihypertensive potential. These in vitro results point to the excellent potential of Peruvian fruits for food-based strategies for complementing effective antidiabetes and antihypertension solutions based on further animal and clinical studies.

  15. Cashew nut roasting: Chemical characterization of particulate matter and genotocixity analysis

    International Nuclear Information System (INIS)

    Oliveira Galvão, Marcos Felipe de; Melo Cabral, Thiago de; André, Paulo Afonso de; Fátima Andrade, Maria de; Miranda, Regina Maura de; Saldiva, Paulo Hilário Nascimento; Castro Vasconcellos, Pérola de; Batistuzzo de Medeiros, Silvia Regina

    2014-01-01

    Background: Particulate matter (PM) is potentially harmful to health and related to genotoxic events, an increase in the number of hospitalizations and mortality from respiratory and cardiovascular diseases. The present study conducted the first characterization of elemental composition and polycyclic aromatic hydrocarbon (PAH) analysis of PM, as well as the biomonitoring of genotoxic activity associated to artisanal cashew nut roasting, an important economic and social activity worldwide. Methods: The levels of PM 2.5 and black carbon were also measured by gravimetric analysis and light reflectance. The elemental composition was determined using X-ray fluorescence spectrometry and PAH analysis was carried out by gas chromatography–mass spectrometry. Genotoxic activity was measured by the Tradescantia pallida micronucleus bioassay (Trad-MCN). Other biomarkers of DNA damage, such as nucleoplasmic bridges and nuclear fragments, were also quantified. Results: The mean amount of PM 2.5 accumulated in the filters (January 2124.2 µg/m 3 ; May 1022.2 µg/m 3 ; September 1291.9 µg/m 3 ), black carbon (January 363.6 µg/m 3 ; May 70 µg/m 3 ; September 69.4 µg/m 3 ) and concentrations of Al, Si, P, S, Cl, K, Ca, Ti, Cr, Mn, Fe, Ni, Cu, Zn, Se, Br and Pb were significantly higher than the non-exposed area. Biomass burning tracers K, Cl, and S were the major inorganic compounds found. Benzo[k]fluoranthene, indene[1,2,3-c,d]pyrene, benzo[ghi]perylene, phenanthrene and benzo[b]fluoranthene were the most abundant PAHs. Mean benzo[a]pyrene-equivalent carcinogenic power values showed a significant cancer risk. The Trad-MCN bioassay revealed an increase in micronucleus frequency, 2–7 times higher than the negative control and significantly higher in all the months analyzed, possibly related to the mutagenic PAHs found. Conclusions: This study demonstrated that artisanal cashew nut roasting is a serious occupational problem, with harmful effects on workers' health. Those

  16. Controle de mosca-branca com extratos vegetais, em tomateiro cultivado em casa-de-vegetação Use of plant extracts on whitefly control in tomato grown in greenhouse

    Directory of Open Access Journals (Sweden)

    Edson LL Baldin

    2007-12-01

    Full Text Available Visando buscar métodos alternativos no controle da mosca-branca Bemisia tabaci (Gennadius biótipo B em tomateiro, foram realizados testes de atratividade e preferência para oviposição em casa-de-vegetação, utilizando-se quatorze extratos aquosos a 3% (peso/volume. Os extratos foram preparados com partes de Azadirachta indica, Trichilia pallida,Chenopodium ambrosioides,Piper nigrum,Melia azedarach,Ruta graveolens,Ricinus communis,Mentha pulegium,Tagetes erecta,Eucalyptus citriodora,Cymbopogon nardus e Coriandrum sativum. Numa segunda etapa, os extratos mais eficientes em casa-de-vegetação foram observados em laboratório, a fim de avaliar o possível efeito sistêmico dos mesmos sobre ninfas da mosca-branca. Constatou-se que as plantas de tomateiro pulverizadas com extratos à base de folhas de M. pulegium e folhas e sementes de A. indica foram menos atrativas aos adultos do inseto. Plantas pulverizadas com extratos de folhas de A. indica e folhas + ramos de R. communis mostraram efeitos deterrentes à oviposição do inseto, reduzindo o número de ovos; em contrapartida, o extrato à base de folhas de C. nardus estimulou a oviposição da mosca-branca sobre as plantas. O uso dos extratos por via sistêmica não afetou o período de desenvolvimento (ovo-adulto da mosca-branca; entretanto, a presença de extratos de sementes e folhas de A. indica e de folhas de M. pulegium provocou aumento significativo na mortalidade de ninfas de B. tabaci biótipo B.Looking for alternative methods of control to silverleaf whitefly Bemisia tabaci (Gennadius biotype B in tomato, attractiveness and oviposition preference tests were accomplished in greenhouse using fourteen aqueous extracts at 3% (weight/volume. The extracts were prepared with parts from Azadirachta indica,Trichilia pallida,Chenopodium ambrosioides,Piper nigrum,Melia azedarach,Ruta graveolens,Ricinus communis,Mentha pulegium,Tagetes erecta,Eucalyptus citriodora, Cymbopogon nardus and

  17. Intra-regional transportation of a tugboat fouling community between the ports of recife and natal, northeast Brazil

    Directory of Open Access Journals (Sweden)

    Cristiane Maria Rocha Farrapeira

    2010-06-01

    Full Text Available This study aimed to identify the incrusting and sedentary animals associated with the hull of a tugboat active in the ports of Pernambuco and later loaned to the port of Natal, Rio Grande do Norte. Thus, areas with dense biofouling were scraped and the species then classified in terms of their bioinvasive status for the Brazilian coast. Six were native to Brazil, two were cryptogenic and 16 nonindigenous; nine of the latter were classified as established (Musculus lateralis, Sphenia fragilis, Balanus trigonus, Biflustra savartii, Botrylloides nigrum, Didemnum psammatodes, Herdmania pallida, Microscosmus exasperatus, and Symplegma rubra and three as invasive (Mytilopsis leucophaeta, Amphibalanus reticulatus, and Striatobalanus amaryllis. The presence of M. leucophaeata, Amphibalanus eburneus and A. reticulatus on the boat's hull propitiated their introduction onto the Natal coast. The occurrence of a great number of tunicate species in Natal reflected the port area's benthic diversity and facilitated the inclusion of two bivalves - Musculus lateralis and Sphenia fragilis - found in their siphons and in the interstices between colonies or individuals, respectively. The results show the role of biofouling on boat hulls in the introduction of nonindigenous species and that the port of Recife acts as a source of some species.Este trabalho objetivou identificar os animais incrustantes e sedentários associados ao casco de um rebocador que atuava nos Portos de Pernambuco e foi cedido para o Porto de Natal, Rio Grande do Norte. Áreas com densa bioincrustação foram raspadas e as espécies foram posteriormente classificadas em relação ao status de bioinvasão no litoral brasileiro. Dentre as espécies identificadas, seis eram nativas do Brasil, duas criptogênicas e 16 exóticas. Destas, oito foram classificadas como estabelecidas (Musculus lateralis, Sphenia fragilis, Balanus trigonus, Biflustra savartii, Botrylloides nigrum, Didemnum psammatodes

  18. Cashew nut roasting: Chemical characterization of particulate matter and genotocixity analysis

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira Galvão, Marcos Felipe de [Programa de Pós-Graduação em Bioquímica, Universidade Federal do Rio Grande do Norte, Natal, RN (Brazil); Melo Cabral, Thiago de; André, Paulo Afonso de [Departamento de Patologia, Universidade de São Paulo, São Paulo, SP (Brazil); Fátima Andrade, Maria de; Miranda, Regina Maura de [Departamento de Ciências Atmosféricas, Universidade de São Paulo, São Paulo, SP (Brazil); Saldiva, Paulo Hilário Nascimento [Departamento de Patologia, Universidade de São Paulo, São Paulo, SP (Brazil); Castro Vasconcellos, Pérola de [Instituto de Química, Universidade de São Paulo, São Paulo, SP (Brazil); Batistuzzo de Medeiros, Silvia Regina, E-mail: sbatistu@cb.ufrn.br [Departamento de Biologia Celular e Genética, CB – UFRN, Centro de Biociências, Universidade Federal do Rio Grande do Norte, Campus Universitário, Lagoa Nova, 59072-970, Natal, RN (Brazil)

    2014-05-01

    Background: Particulate matter (PM) is potentially harmful to health and related to genotoxic events, an increase in the number of hospitalizations and mortality from respiratory and cardiovascular diseases. The present study conducted the first characterization of elemental composition and polycyclic aromatic hydrocarbon (PAH) analysis of PM, as well as the biomonitoring of genotoxic activity associated to artisanal cashew nut roasting, an important economic and social activity worldwide. Methods: The levels of PM{sub 2.5} and black carbon were also measured by gravimetric analysis and light reflectance. The elemental composition was determined using X-ray fluorescence spectrometry and PAH analysis was carried out by gas chromatography–mass spectrometry. Genotoxic activity was measured by the Tradescantia pallida micronucleus bioassay (Trad-MCN). Other biomarkers of DNA damage, such as nucleoplasmic bridges and nuclear fragments, were also quantified. Results: The mean amount of PM{sub 2.5} accumulated in the filters (January 2124.2 µg/m{sup 3}; May 1022.2 µg/m{sup 3}; September 1291.9 µg/m{sup 3}), black carbon (January 363.6 µg/m{sup 3}; May 70 µg/m{sup 3}; September 69.4 µg/m{sup 3}) and concentrations of Al, Si, P, S, Cl, K, Ca, Ti, Cr, Mn, Fe, Ni, Cu, Zn, Se, Br and Pb were significantly higher than the non-exposed area. Biomass burning tracers K, Cl, and S were the major inorganic compounds found. Benzo[k]fluoranthene, indene[1,2,3-c,d]pyrene, benzo[ghi]perylene, phenanthrene and benzo[b]fluoranthene were the most abundant PAHs. Mean benzo[a]pyrene-equivalent carcinogenic power values showed a significant cancer risk. The Trad-MCN bioassay revealed an increase in micronucleus frequency, 2–7 times higher than the negative control and significantly higher in all the months analyzed, possibly related to the mutagenic PAHs found. Conclusions: This study demonstrated that artisanal cashew nut roasting is a serious occupational problem, with harmful

  19. Use of coccidiostat in mineral salt and study on ovine eimeriosis Uso de coccidiostático no sal mineral e estudo da eimeriose ovina

    Directory of Open Access Journals (Sweden)

    Alberto Luiz Freire de Andrade Júnior

    2012-03-01

    Full Text Available Coccidiosis is a serious obstacle to sheep production, which is becoming a limiting factor, especially with regard to lamb production. However, there are few studies on this parasite in the State of Rio Grande do Norte. The aim of this study was to evaluate the action of decoquinate, added to mineral salt, for controlling Eimeria infection in lambs, and to identify which species are infecting sheep in the eastern region of the state. This study was carried out from August 2009 to January 2010, and used 76 animals. These were divided into two treatment groups: one with common mineral salt, and the other with mineral salt enriched with 6% micronized decoquinate. Fecal samples and body weight measurements were taken every 14 days for parasitological diagnosis, weight gain follow-up and quantitative analysis. The study showed that there was a significant difference in OPG only at the 7th collection, but no significant difference in weight gain. The Eimeria species found were E. ahsata. E. crandallis. E. granulosa. E. intrincata. E. ovina. E. faurei. E. ovinoidalis. E. pallida and E. parva. It was concluded that addition of decoquinate to mineral salt gave rise to lower oocyst elimination, thus favoring eimeriosis control in sheep.A coccidiose constitui-se num sério obstáculo à ovinocultura, a qual vem se tornando um fator limitante para a exploração, especialmente para a produção de cordeiros precoces. Porém, poucos são os estudos com esse parasito no Estado do Rio Grande do Norte. O objetivo deste trabalho foi avaliar a ação do decoquinato, adicionado ao sal mineral, no controle da infecção causada por parasitas do gênero Eimeria em cordeiros, e identificar quais as espécies infectam ovinos na região leste Potiguar. O trabalho foi desenvolvido entre agosto de 2009 e janeiro de 2010, e foram usados 76 animais, distribuídos em dois tratamentos, um com sal mineral comum e o outro com sal mineral enriquecido com decoquinato a 6

  20. Varying Herbivore Population Structure Correlates with Lack of Local Adaptation in a Geographic Variable Plant-Herbivore Interaction

    Science.gov (United States)

    Cogni, Rodrigo; Trigo, José R.; Futuyma, Douglas J.

    2011-01-01

    Local adaptation of parasites to their hosts due to coevolution is a central prediction of many theories in evolutionary biology. However, empirical studies looking for parasite local adaptation show great variation in outcomes, and the reasons for such variation are largely unknown. In a previous study, we showed adaptive differentiation in the arctiid moth Utetheisa ornatrix to its host plant, the pyrrolizidine alkaloid-bearing legume Crotalaria pallida, at the continental scale, but found no differentiation at the regional scale. In the present study, we sampled the same sites to investigate factors that may contribute to the lack of differentiation at the regional scale. We performed field observations that show that specialist and non-specialist polyphagous herbivore incidence varies among populations at both scales. With a series of common-garden experiments we show that some plant traits that may affect herbivory (pyrrolizidine alkaloids and extrafloral nectaries) vary at the regional scale, while other traits (trichomes and nitrogen content) just vary at the continental scale. These results, combined with our previous evidence for plant population differentiation based on larval performance on fresh fruits, suggest that U. ornatrix is subjected to divergent selection even at the regional scale. Finally, with a microsatellite study we investigated population structure of U. ornatrix. We found that population structure is not stable over time: we found population differentiation at the regional scale in the first year of sampling, but not in the second year. Unstable population structure of the herbivore is the most likely cause of the lack of regional adaptation. PMID:22220208

  1. Complementary and alternative interventions in asthma, allergy, and immunology.

    Science.gov (United States)

    Bielory, Leonard

    2004-08-01

    To review which herbs are most commonly used as complementary and alternative medicine (CAM) for treatment of asthma, allergy, and immunologic conditions. A review of the literature was performed using the PubMed and OVID databases searching the keywords asthma, allergy, and CAM to identify studies published between 1980 and 2003 that focused on Echinacea (Echinacea augustifolia, Echinacea pallida, and Echinacea purpurea); garlic (Allium); angelica; chamomile; ephedra; gingko; grape seed extract; licorice root (Glycyrrhiza); St. John's wort (Hypericum); kava kava (Piper); peppermint oil and leaf (Mentha); stinging nettle (Urtica); and ginseng (Panax) published in the English and German literature. Studies included in vitro and in vivo clinical trials and case reports selected according to the expert opinion of the author. Echinacea is one of the most common herbs used to treat symptoms of the "common cold" or upper respiratory tract allergies. Although no common drug interactions have been reported, there is a risk of hepatotoxicity, exacerbation of allergies and asthma, and anaphylactic reactions. Garlic is primarily used for cardiovascular health and relief of cough, colds, and rhinitis. Adverse effects commonly include gastrointestinal disturbances, change in body odor through the sweat and breath, and rarely allergic reactions or hypoglycemia. Other CAM agents, including angelica, German chamomile flower, ephedra, gingko, grape seed extract, licorice root, St. John's wort, kava kava rhizome, peppermint, stinging nettle, and ginseng, are also associated with significant adverse effects. The specialty of allergy and immunology has seen the second largest increase in the popularity of CAM (second only to practitioners who treat lower back pain). Almost all of the CAM interventions have displayed adverse effects, usually in the form of a hypersensitivity reaction. Allergists and clinical immunologists need to become more knowledgeable about CAM so that they can

  2. First insight into the viral community of the cnidarian model metaorganism Aiptasia using RNA-Seq data

    KAUST Repository

    Brüwer, Jan D.

    2018-03-01

    Current research posits that all multicellular organisms live in symbioses with associated microorganisms and form so-called metaorganisms or holobionts. Cnidarian metaorganisms are of specific interest given that stony corals provide the foundation of the globally threatened coral reef ecosystems. To gain first insight into viruses associated with the coral model system Aiptasia (sensu Exaiptasia pallida), we analyzed an existing RNA-Seq dataset of aposymbiotic, partially populated, and fully symbiotic Aiptasia CC7 anemones with Symbiodinium. Our approach included the selective removal of anemone host and algal endosymbiont sequences and subsequent microbial sequence annotation. Of a total of 297 million raw sequence reads, 8.6 million (∼3%) remained after host and endosymbiont sequence removal. Of these, 3,293 sequences could be assigned as of viral origin. Taxonomic annotation of these sequences suggests that Aiptasia is associated with a diverse viral community, comprising 116 viral taxa covering 40 families. The viral assemblage was dominated by viruses from the families Herpesviridae (12.00%), Partitiviridae (9.93%), and Picornaviridae (9.87%). Despite an overall stable viral assemblage, we found that some viral taxa exhibited significant changes in their relative abundance when Aiptasia engaged in a symbiotic relationship with Symbiodinium. Elucidation of viral taxa consistently present across all conditions revealed a core virome of 15 viral taxa from 11 viral families, encompassing many viruses previously reported as members of coral viromes. Despite the non-random selection of viral genetic material due to the nature of the sequencing data analyzed, our study provides a first insight into the viral community associated with Aiptasia. Similarities of the Aiptasia viral community with those of corals corroborate the application of Aiptasia as a model system to study coral holobionts. Further, the change in abundance of certain viral taxa across different

  3. Rabbit dietary supplementation with pale purple coneflower. 2. Effects on the performances, bacterial community, blood parameters and immunity of growing rabbits.

    Science.gov (United States)

    Kovitvadhi, A; Gai, F; Dabbou, S; Ferrocino, I; Rotolo, L; Falzone, M; Vignolini, C; Gennero, M S; Bergagna, S; Dezzutto, Daniela; Barbero, R; Nebbia, P; Rosati, S; Cocolin, L; Zoccarato, I; Gasco, L

    2016-07-01

    Echinacea pallida (EPAL), a herbaceous flowering plant with immunomodulatory properties, has been chosen to determine the pre- and post-supplementary effects on the growth performances, bacterial community, blood parameters and immunity of growing rabbits. The same Grimaud does (14-week-old) from the studied in the first part of this study were randomly divided into two groups (n=50/group). The first group was fed a basal diet without supplementation (Control group, C) while the another group was fed a basal diet supplemented with 3 g EPAL/kg diet (Echinacea group, E). From the second parturition, 80 weaned kits (40 from the C does and 40 from the E does) were randomly assigned to four groups of 20 animals each and were fed a growing commercial diet supplemented with or without a 3 g EPAL/kg diet: the CC group (rabbits from the C does fed the control diet), CE group (rabbits from the C does fed the supplemented diet), EC (rabbits from the E does fed the control diet) and EE group (rabbits from the E does fed the supplemented diet). The dietary EPAL treatment did not affect the growth performance. Ten fattening rabbits from each group were selected to evaluate the bacterial community and blood parameters, while the remaining rabbits (n=10/group) were used to study phagocytosis and the humoral immune response. The variability was evaluated from hard faeces at 35, 49 and 89 days, and the caecal content at 89 days. The variability of the bacterial community of the EE group was higher than that of the other groups. The phagocytic activity was higher in the CE and EE groups than in the CC and EC ones (30.9 and 29.7 v. 21.2 and 21.8%; Pbacterial community, blood parameters or humoral immune responses in growing rabbits, except for an increase in phagocytic activities.

  4. Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii.

    Directory of Open Access Journals (Sweden)

    John Fosu-Nyarko

    Full Text Available The beet cyst nematode, Heterodera schachtii, is a major root pest that significantly impacts the yield of sugar beet, brassicas and related species. There has been limited molecular characterisation of this important plant pathogen: to identify target genes for its control the transcriptome of the pre-parasitic J2 stage of H. schachtii was sequenced using Roche GS FLX. Ninety seven percent of reads (i.e., 387,668 with an average PHRED score > 22 were assembled with CAP3 and CLC Genomics Workbench into 37,345 and 47,263 contigs, respectively. The transcripts were annotated by comparing with gene and genomic sequences of other nematodes and annotated proteins on public databases. The annotated transcripts were much more similar to sequences of Heterodera glycines than to those of Globodera pallida and root knot nematodes (Meloidogyne spp.. Analysis of these transcripts showed that a subset of 2,918 transcripts was common to free-living and plant parasitic nematodes suggesting that this subset is involved in general nematode metabolism and development. A set of 148 contigs and 183 singletons encoding putative homologues of effectors previously characterised for plant parasitic nematodes were also identified: these are known to be important for parasitism of host plants during migration through tissues or feeding from cells or are thought to be involved in evasion or modulation of host defences. In addition, the presence of sequences from a nematode virus is suggested. The sequencing and annotation of this transcriptome significantly adds to the genetic data available for H. schachtii, and identifies genes primed to undertake required roles in the critical pre-parasitic and early post-parasitic J2 stages. These data provide new information for identifying potential gene targets for future protection of susceptible crops against H. schachtii.

  5. Les jachères longues pâturées dans les Andes. Acquis interdisciplinaires

    Directory of Open Access Journals (Sweden)

    Dominique Hervé

    2000-01-01

    Full Text Available An interdisciplinary approach comes into view between the lines of this team investigation synthesis which deals with Andean fallow dynamics. lt questions agronomic and social sciences. An agronomistand a anthropologist, facing initial semantic difficulty to define fallow, gather their points of view concerning the same peasant community of Bolivian high plateau. This community is still functioning as the archetype of Andean communities. They challenge to explain why land has been fallowing during ten years since such a long time, and how collective management is changing. Firstly each research worker tries to answer within his proper scientific sphere. The agronomist checks more deeply some of the fallow functions: soil fertility restoration (quimical, biological and physical depending on fallow duration, the impact of long fallow on parasitism (Globodera pallida, Premnotrypes latithorax and fuelwood production. The best fallow duration is not ten years for every fallow functions. The combination of these functions may have changed in the past. The anthropologist studies history of land access and actual social representations. Interdisciplinary dialog occur between them, but reality looks to be more complex and quiet unpredictable as expecting specific fallow dynamics repeatly fail. Fallow duration looks not to change because this time is fix, cyclical; it represents the history and the memory of the community. What actually changes is the type of land access, from collective to private, and the desigual access to these types of land. It implies a new focus to on-farm management. We conclude that edafological constraints are not the only deterministicreason for long fallow duration. We teased out the different reasons, which are multiple, jerarquized and linked within a dynamic process, as threads are. It is the main goal of an interdisciplinary research.

  6. Ducks and passerines nesting in northern mixed-grass prairie treated with fire

    Science.gov (United States)

    Grant, Todd A.; Shaffer, Terry L.; Madden, Elizabeth M.; Berkey, Gordon B.

    2011-01-01

    Prescribed fire is an important, ecology-driven tool for restoration of grassland systems. However, prescribed fire remains controversial for some grassland managers because of reported reductions in bird use of recently burned grasslands. Few studies have evaluated effects of fire on grassland bird populations in the northern mixed-grass prairie region. Fewer studies yet have examined the influence of fire on nest density or survival. In our review, we found no studies that simultaneously examined effects of fire on duck and passerine nesting. During 1998—2003, we examined effects of prescribed fire on the density of upland-nesting ducks and passerines nesting in north-central North Dakota, USA. Apparent nest densities of gadwall (Anas strepera), mallard (A. platyrhynchos), and all duck species combined, were influenced by fire history of study units, although the degree of influence was not compelling. Fire history was not related to nest densities of blue-winged teal (A. discors), northern shoveler (A. clypeata), or northern pintail (A. acuta); however, apparent nest densities in relation to the number of postfire growing seasons exhibited a strikingly similar pattern among all duck species. When compared to ducks, fire history strongly influenced apparent nest densities of clay-colored sparrow (Spizella pallida), Savannah sparrow (Passerculus sandwichensis), and bobolink (Dolichonyx oryzivorus). For most species examined, apparent nest densities were lowest in recently burned units, increased during the second postfire growing season, and stabilized or, in some cases, decreased thereafter. Prescribed fire is critical for restoring the ecology of northern mixed-grass prairies and our findings indicate that reductions in nest densities are limited mostly to the first growing season after fire. Our results support the premise that upland-nesting ducks and several grassland passerine species are adapted to periodic fires occurring at a frequency similar to that

  7. Changes in zooxanthellae density, morphology, and mitotic index in hermatypic corals and anemones exposed to cyanide.

    Science.gov (United States)

    Cervino, J M; Hayes, R L; Honovich, M; Goreau, T J; Jones, S; Rubec, P J

    2003-05-01

    Sodium cyanide (NaCN) is widely used for the capture of reef fish throughout Southeast Asia and causes extensive fish mortality, but the effect of NaCN on reef corals remains debated. To document the impact of cyanide exposure on corals, the species Acropora millepora, Goniopora sp., Favites abdita, Trachyphyllia geoffrio, Plerogyra sp., Heliofungia actinformis, Euphyllia divisa, and Scarophyton sp., and the sea anemone Aiptasia pallida were exposed to varying concentrations of cyanide for varying time periods. Corals were exposed to 50, 100, 300, and 600 mg/l of cyanide ion (CN(-)) for 1-2 min (in seawater, the CN(-) forms hydrocyanic acid). These concentrations are much lower than those reportedly used by fish collectors. Exposed corals and anemones immediately retracted their tentacles and mesenterial filaments, and discharged copious amounts of mucus containing zooxanthellae. Gel electrophoreses techniques found changes in protein expression in both zooxanthellae and host tissue. Corals and anemones exposed to cyanide showed an immediate increase in mitotic cell division of their zooxenthellae, and a decrease in zooxanthellae density. In contrast, zooxanthellae cell division and density remained constant in controls. Histopathological changes included gastrodermal disruption, mesogleal degradation, and increased mucus in coral tissues. Zooxanthellae showed pigment loss, swelling, and deformation. Mortality occurred at all exposure levels. Exposed specimens experienced an increase in the ratio of gram-negative to gram-positive bacteria on the coral surface. The results demonstrate that exposure cyanide causes mortality to corals and anemones, even when applied at lower levels than that used by fish collectors. Even brief exposure to cyanide caused slow-acting and long-term damage to corals and their zooxanthellae.

  8. Survival dynamics of scleractinian coral larvae and implications for dispersal

    Science.gov (United States)

    Graham, E. M.; Baird, A. H.; Connolly, S. R.

    2008-09-01

    Survival of pelagic marine larvae is an important determinant of dispersal potential. Despite this, few estimates of larval survival are available. For scleractinian corals, few studies of larval survival are long enough to provide accurate estimates of longevity. Moreover, changes in mortality rates during larval life, expected on theoretical grounds, have implications for the degree of connectivity among reefs and have not been quantified for any coral species. This study quantified the survival of larvae from five broadcast-spawning scleractinian corals ( Acropora latistella, Favia pallida, Pectinia paeonia, Goniastrea aspera, and Montastraea magnistellata) to estimate larval longevity, and to test for changes in mortality rates as larvae age. Maximum lifespans ranged from 195 to 244 d. These longevities substantially exceed those documented previously for coral larvae that lack zooxanthellae, and they exceed predictions based on metabolic rates prevailing early in larval life. In addition, larval mortality rates exhibited strong patterns of variation throughout the larval stage. Three periods were identified in four species: high initial rates of mortality; followed by a low, approximately constant rate of mortality; and finally, progressively increasing mortality after approximately 100 d. The lifetimes observed in this study suggest that the potential for long-distance dispersal may be substantially greater than previously thought. Indeed, detection of increasing mortality rates late in life suggests that energy reserves do not reach critically low levels until approximately 100 d after spawning. Conversely, increased mortality rates early in life decrease the likelihood that larvae transported away from their natal reef will survive to reach nearby reefs, and thus decrease connectivity at regional scales. These results show how variation in larval survivorship with age may help to explain the seeming paradox of high genetic structure at metapopulation scales

  9. FMRFamide-related peptides in potato cyst nematodes.

    Science.gov (United States)

    Kimber, M J; Fleming, C C; Bjourson, A J; Halton, D W; Maule, A G

    2001-09-03

    This study presents data demonstrating the presence of FMRFamide-related peptides (FaRPs) in potato cyst nematodes (PCN). Five transcripts of FaRP encoding genes, designated gpflp-1 to gpflp-5, were characterised using RACE. In terms of ORFs, gpflp-1 was 444 base pairs (bp) long and coded for four copies of the FaRP, PF3 (KSAYMRFamide) whilst gpflp-2 was 309 bp long and encoded one copy of the peptide, KNKFEFIRFamide. gpflp-3 (420 bp) Encoded two copies of KHEYLRFamide (AF2) and the genes gpflp-4 and gpflp-5 encoded a total of 11 FaRPs, most of which are novel to PCN. FMRFamide-related peptide (FaRP)-like immunoreactivity was observed in both PCN species, Globodera pallida and Globodera rostochiensis, using an antiserum raised against the invertebrate peptide, FMRFamide. Immunopositive neurones were found throughout the central nervous system in the ventral and dorsal nerve cords and the circumpharyngeal and perianal nerve rings. Reactive neurones were also present peripherally, innervating the highly muscular pharynx with a nerve net and ring-like structures. Positive immunostaining was also observed in neurones running toward the stylet protractor muscles and/or the anterior sensory apparatus. This study implicates a role for FaRPs in feeding, host penetration and sensory function of PCN. This is the first study to characterise FaRP encoding genes from a plant-parasitic nematode using a targeted PCR based RACE approach and further underlines the importance and diversity of this neuropeptide group in the phylum Nematoda.

  10. Effective delivery of a nematode-repellent peptide using a root-cap-specific promoter.

    Science.gov (United States)

    Lilley, Catherine J; Wang, Dong; Atkinson, Howard J; Urwin, Peter E

    2011-02-01

    The potential of the MDK4-20 promoter of Arabidopsis thaliana to direct effective transgenic expression of a secreted nematode-repellent peptide was investigated. Its expression pattern was studied in both transgenic Arabidopsis and Solanum tuberosum (potato) plants. It directed root-specific β-glucuronidase expression in both species that was chiefly localized to cells of the root cap. Use of the fluorescent timer protein dsRED-E5 established that the MDK4-20 promoter remains active for longer than the commonly used constitutive promoter CaMV35S in separated potato root border cells. Transgenic Arabidopsis lines that expressed the nematode-repellent peptide under the control of either AtMDK4-20 or CaMV35S reduced the establishment of the beet cyst nematode Heterodera schachtii. The best line using the AtMDK4-20 promoter displayed a level of resistance >80%, comparable to that of lines using the CaMV35S promoter. In transgenic potato plants, 94.9 ± 0.8% resistance to the potato cyst nematode Globodera pallida was achieved using the AtMDK4-20 promoter, compared with 34.4 ± 8.4% resistance displayed by a line expressing the repellent peptide from the CaMV35S promoter. These results establish the potential of the AtMDK4-20 promoter to limit expression of a repellent peptide whilst maintaining or even improving the efficacy of the cyst-nematode defence. © 2010 The Authors. Plant Biotechnology Journal © 2010 Society for Experimental Biology, Association of Applied Biologists and Blackwell Publishing Ltd.

  11. Characterization of susceptibility and resistance responses to potato cyst nematode (Globodera spp.) infection of tomato lines in the absence and presence of the broad-spectrum nematode resistance Hero gene.

    Science.gov (United States)

    Sobczak, Miroslaw; Avrova, Anna; Jupowicz, Justyna; Phillips, Mark S; Ernst, Karin; Kumar, Amar

    2005-02-01

    The tomato Hero A gene is the only member of a multigene family that confers a high level (>80%) of resistance to all the economically important pathotypes of potato cyst nematode (PCN) species Globodera rostochiensis and G. pallida. Although the resistance levels of transgenic tomato lines were similar to those of the tomato line LA1792 containing the introgressed Hero multigene family, transgenic potato plants expressing the tomato Hero A gene are not resistant to PCNs. Comparative microscopy studies of in vitro infected roots of PCN-susceptible tomato cv. Money Maker, the resistant breeding line LA1792, and transgenic line L10 with Ro1 pathotype have revealed no statistically significant difference in the number of juveniles invading roots. However, syncytia (specialized feeding cells) induced in LA1792 and L10 roots mostly were found to have degenerated a few days after their induction, and a few surviving syncytia were able to support only the development of males rather than females. Thus, the ratio between males and females was biased towards males on LA1792 and L10 roots. A series of changes occur in resistant plants leading to formation of a layer of necrotic cells separating the syncytium from stellar conductive tissues and this is followed by degradation of the syncytium. Although the Hero A gene is expressed in all tissues, including roots, stems, leaves, and flower buds, its expression is upregulated in roots in response to PCN infection. Moreover, the expression profiles of the Hero A correlates with the timing of death of the syncytium.

  12. Structural determinants at the interface of the ARC2 and leucine-rich repeat domains control the activation of the plant immune receptors Rx1 and Gpa2.

    Science.gov (United States)

    Slootweg, Erik J; Spiridon, Laurentiu N; Roosien, Jan; Butterbach, Patrick; Pomp, Rikus; Westerhof, Lotte; Wilbers, Ruud; Bakker, Erin; Bakker, Jaap; Petrescu, Andrei-José; Smant, Geert; Goverse, Aska

    2013-07-01

    Many plant and animal immune receptors have a modular nucleotide-binding-leucine-rich repeat (NB-LRR) architecture in which a nucleotide-binding switch domain, NB-ARC, is tethered to a LRR sensor domain. The cooperation between the switch and sensor domains, which regulates the activation of these proteins, is poorly understood. Here, we report structural determinants governing the interaction between the NB-ARC and LRR in the highly homologous plant immune receptors Gpa2 and Rx1, which recognize the potato cyst nematode Globodera pallida and Potato virus X, respectively. Systematic shuffling of polymorphic sites between Gpa2 and Rx1 showed that a minimal region in the ARC2 and N-terminal repeats of the LRR domain coordinate the activation state of the protein. We identified two closely spaced amino acid residues in this region of the ARC2 (positions 401 and 403) that distinguish between autoactivation and effector-triggered activation. Furthermore, a highly acidic loop region in the ARC2 domain and basic patches in the N-terminal end of the LRR domain were demonstrated to be required for the physical interaction between the ARC2 and LRR. The NB-ARC and LRR domains dissociate upon effector-dependent activation, and the complementary-charged regions are predicted to mediate a fast reassociation, enabling multiple rounds of activation. Finally, we present a mechanistic model showing how the ARC2, NB, and N-terminal half of the LRR form a clamp, which regulates the dissociation and reassociation of the switch and sensor domains in NB-LRR proteins.

  13. [Diversity and distribution of grasshoppers (Orthoptera: Acridoidea) in grasslands of the Southern Pampas region, Argentina].

    Science.gov (United States)

    Mariottini, Yanina; De Wysiecki, María Laura; Lange, Carlos Ernesto

    2013-03-01

    abundance and distribution. Covasacris pallidinota, Dichroplus elongatus, D. maculipennis, Borellia bruneri and B. pallida were the most widely distributed species, most of them (12) showed a restricted distribution and few (five) an intermediate distribution.

  14. Sporothrix chilensis sp. nov. (Ascomycota: Ophiostomatales), a soil-borne agent of human sporotrichosis with mild-pathogenic potential to mammals.

    Science.gov (United States)

    Rodrigues, Anderson Messias; Cruz Choappa, Rodrigo; Fernandes, Geisa Ferreira; de Hoog, G Sybren; de Camargo, Zoilo Pires

    2016-02-01

    A combination of phylogeny, evolution, morphologies and ecologies has enabled major advances in understanding the taxonomy of Sporothrix species, including members exhibiting distinct lifestyles such as saprobes, human/animal pathogens, and insect symbionts. Phylogenetic analyses of ITS1/2 + 5.8s sequences split Sporothrix genus in two well-defined groups with dissimilar ecologies. Species embedded in the Sporothrix schenckii complex are frequently agents of human and animal sporotrichosis, and some of these are responsible for large sapronoses and zoonoses around the warmer temperate regions of the world. At the other extreme, basal saprophytic species evolved in association with decaying wood and soil, and are rarely found to cause human disease. We propose to create a new taxa, Sporothrix chilensis sp. nov., to accommodate strains collected from a clinical case of onychomycosis as well as from environmental origins in Chile. Multigene analyses based on ITS1/2 + 5.8s region, beta-tubulin, calmodulin and translation elongation factor 1α revealed that S. chilensis is a member of the Sporothrix pallida complex, and the nearest taxon is Sporothrix mexicana, a rare soil-borne species, non-pathogenic to humans. The ITS region serves as a primary barcode marker, while each one of the protein-coding loci easily recognized species boundaries providing sufficient information for species identification. A disseminated model of murine sporotrichosis revealed a mild-pathogenic potential, with lung invasion. Although S. chilensis is not a primary pathogen, accidental infection may have an impact in the immunosuppressed population. With the introduction of distinct species with similar routes of transmission but different virulence, identification of Sporothrix agents at the species level is mandatory. Copyright © 2015 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  15. A Study of Eimeria Species in Sheep in Mosul City

    Directory of Open Access Journals (Sweden)

    M. H. Hasan

    2012-01-01

    Full Text Available The study was conducted to diagnose and study species of Eimeria in sheep in Mosul city from beginning of September2009 to end May 2010, as well as to determine the percentage and intensity of infection of Eimeria species. Five hundredfecal samples of sheep with different ages were collected from different areas of the Mosul city. The results showed that totalpercentage of Emeria infection was 63.6%. The variations in percentage of infection were recorded according to month ofstudy. Highest percentage was recorded in March being 89.2% and the lowest in September 25.9%. The species E. ovinarecorded the highest infection rate 86.7%, while the species E. granulosa represented lowest infection rate 10%. Moreover theintensity of infection was higher in young ages and lower in adult. The results were detected that indoor sheep infection withhigh parasitic infection 69.9% whereas outdoor animals have an infection rate 25.3%. The morphological characters of oocystswere varied according to species of Eimeria has been studied. Fifty of intestinal and abomasal samples from both slaughteredin shops butchery in Mosul city and dead animals were examined to detect Eimeria infection, and results show that infectionpercentage was 56.4% in intestine of slaughtered animals and 36.3% in dead animal. Moreover no infection of Eimeria weredetected in abomasums in both slaughtered and dead animals. The oocysts of (E. parva, E.pallida and E. ovinoidalis detectedat more than 5000 oocysts per gram of intestinal contents. The intestinal secraping stained with Giemsa stain reveals thepresence of different developmental stages of parasites in wall of intestine. The histopathological sections of intestine revealedthe different pathological changes concerning of Eimeria infection.

  16. Establishing native warm season grasses on Eastern Kentucky strip mines

    Energy Technology Data Exchange (ETDEWEB)

    Barnes, T.G.; Larkin, J.L.; Arnett, M.B. [Univ. of Kentucky, Lexington, KY (United States). Dept. of Forestry

    1998-12-31

    The authors evaluated various methods of establishing native warm season grasses on two reclaimed Eastern Kentucky mines from 1994--1997. Most current reclamation practices incorporate the use of tall fescue (Festuca arundinacea) and other cool-season grasses/legumes that provide little wildlife habitats. The use of native warm season grasses will likely improve wildlife habitat on reclaimed strip mines. Objectives of this study were to compare the feasibility of establishing these grasses during fall, winter, or spring using a native rangeland seeder or hydroseeding; a fertilizer application at planting; or cold-moist stratification prior to hydroseeding. Vegetative cover, bare ground, species richness, and biomass samples were collected at the end of each growing season. Native warm season grass plantings had higher plant species richness compared to cool-season reclamation mixtures. There was no difference in establishment of native warm season grasses as a result of fertilization or seeding technique. Winter native warm season grass plantings were failures and cold-moist stratification did not increase plant establishment during any season. As a result of a drought during 1997, both cool-season and warm season plantings were failures. Cool-season reclamation mixtures had significantly more vegetative cover and biomass compared to native warm season grass mixtures and the native warm season grass plantings did not meet vegetative cover requirements for bond release. Forbs and legumes that established well included pale purple coneflower (Echinacea pallida), lance-leaf coreopsis (Coreopsis lanceolata), round-headed lespedeza (Lespedeza capitata), partridge pea (Cassia fasiculata), black-eyed susan (Rudbeckia hirta), butterfly milkweed (Asclepias tuberosa), and bergamot (Monarda fistulosa). Results from two demonstration plots next to research plots indicate it is possible to establish native warm season grasses on Eastern Kentucky strip mines for wildlife habitat.

  17. Establishing native warm season grasses on Eastern Kentucky strip mines

    International Nuclear Information System (INIS)

    Barnes, T.G.; Larkin, J.L.; Arnett, M.B.

    1998-01-01

    The authors evaluated various methods of establishing native warm season grasses on two reclaimed Eastern Kentucky mines from 1994--1997. Most current reclamation practices incorporate the use of tall fescue (Festuca arundinacea) and other cool-season grasses/legumes that provide little wildlife habitats. The use of native warm season grasses will likely improve wildlife habitat on reclaimed strip mines. Objectives of this study were to compare the feasibility of establishing these grasses during fall, winter, or spring using a native rangeland seeder or hydroseeding; a fertilizer application at planting; or cold-moist stratification prior to hydroseeding. Vegetative cover, bare ground, species richness, and biomass samples were collected at the end of each growing season. Native warm season grass plantings had higher plant species richness compared to cool-season reclamation mixtures. There was no difference in establishment of native warm season grasses as a result of fertilization or seeding technique. Winter native warm season grass plantings were failures and cold-moist stratification did not increase plant establishment during any season. As a result of a drought during 1997, both cool-season and warm season plantings were failures. Cool-season reclamation mixtures had significantly more vegetative cover and biomass compared to native warm season grass mixtures and the native warm season grass plantings did not meet vegetative cover requirements for bond release. Forbs and legumes that established well included pale purple coneflower (Echinacea pallida), lance-leaf coreopsis (Coreopsis lanceolata), round-headed lespedeza (Lespedeza capitata), partridge pea (Cassia fasiculata), black-eyed susan (Rudbeckia hirta), butterfly milkweed (Asclepias tuberosa), and bergamot (Monarda fistulosa). Results from two demonstration plots next to research plots indicate it is possible to establish native warm season grasses on Eastern Kentucky strip mines for wildlife habitat

  18. Feeding on Host Plants with Different Concentrations and Structures of Pyrrolizidine Alkaloids Impacts the Chemical-Defense Effectiveness of a Specialist Herbivore.

    Science.gov (United States)

    Martins, Carlos H Z; Cunha, Beatriz P; Solferini, Vera N; Trigo, José R

    2015-01-01

    Sequestration of chemical defenses from host plants is a strategy widely used by herbivorous insects to avoid predation. Larvae of the arctiine moth Utetheisa ornatrix feeding on unripe seeds and leaves of many species of Crotalaria (Leguminosae) sequester N-oxides of pyrrolizidine alkaloids (PAs) from these host plants, and transfer them to adults through the pupal stage. PAs confer protection against predation on all life stages of U. ornatrix. As U. ornatrix also uses other Crotalaria species as host plants, we evaluated whether the PA chemical defense against predation is independent of host plant use. We fed larvae from hatching to pupation with either leaves or seeds of one of eight Crotalaria species (C. incana, C. juncea, C. micans, C. ochroleuca, C. pallida, C. paulina, C. spectabilis, and C. vitellina), and tested if adults were preyed upon or released by the orb-weaving spider Nephila clavipes. We found that the protection against the spider was more effective in adults whose larvae fed on seeds, which had a higher PA concentration than leaves. The exceptions were adults from larvae fed on C. paulina, C. spectabilis and C. vitellina leaves, which showed high PA concentrations. With respect to the PA profile, we describe for the first time insect-PAs in U. ornatrix. These PAs, biosynthesized from the necine base retronecine of plant origin, or monocrotaline- and senecionine-type PAs sequestered from host plants, were equally active in moth chemical defense, in a dose-dependent manner. These results are also partially explained by host plant phylogeny, since PAs of the host plants do have a phylogenetic signal (clades with high and low PA concentrations in leaves) which is reflected in the adult defense.

  19. De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae.

    Directory of Open Access Journals (Sweden)

    Mukesh Kumar

    Full Text Available The cereal cyst nematode (CCN, Heterodera avenae is a major pest of wheat (Triticum spp that reduces crop yields in many countries. Cyst nematodes are obligate sedentary endoparasites that reproduce by amphimixis. Here, we report the first transcriptome analysis of two stages of H. avenae. After sequencing extracted RNA from pre parasitic infective juvenile and adult stages of the life cycle, 131 million Illumina high quality paired end reads were obtained which generated 27,765 contigs with N50 of 1,028 base pairs, of which 10,452 were annotated. Comparative analyses were undertaken to evaluate H. avenae sequences with those of other plant, animal and free living nematodes to identify differences in expressed genes. There were 4,431 transcripts common to H. avenae and the free living nematode Caenorhabditis elegans, and 9,462 in common with more closely related potato cyst nematode, Globodera pallida. Annotation of H. avenae carbohydrate active enzymes (CAZy revealed fewer glycoside hydrolases (GHs but more glycosyl transferases (GTs and carbohydrate esterases (CEs when compared to M. incognita. 1,280 transcripts were found to have secretory signature, presence of signal peptide and absence of transmembrane. In a comparison of genes expressed in the pre-parasitic juvenile and feeding female stages, expression levels of 30 genes with high RPKM (reads per base per kilo million value, were analysed by qRT-PCR which confirmed the observed differences in their levels of expression levels. In addition, we have also developed a user-friendly resource, Heterodera transcriptome database (HATdb for public access of the data generated in this study. The new data provided on the transcriptome of H. avenae adds to the genetic resources available to study plant parasitic nematodes and provides an opportunity to seek new effectors that are specifically involved in the H. avenae-cereal host interaction.

  20. Diversidad y distribución de acridios (Orthoptera: Acridoidea en pastizales del sur de la región pampeana, Argentina

    Directory of Open Access Journals (Sweden)

    Yanina Mariottini

    2013-03-01

    Full Text Available Los acridios son componentes nativos de los pastizales, dichos sistemas han sido modificados debido a la intensificación de las actividades agrícola-ganaderas y por lo tanto se considera importante estudiar las comunidades de acridios asociadas. Se estudió la diversidad y distribución de acridios en el Sur de la región pampeana a través de muestreos realizados en las comunidades vegetales más representativas del partido de Laprida, provincia de Buenos Aires, durante cinco temporadas (2005-2010. Se recolectaron 22 especies. La subfamilia Melanoplinae fue la más diversa (ocho especies. La mayor cantidad de especies se observó en los pastizales nativos (18. La diversidad en los pastizales alterados (1.75±0.096 fue superior (p<0.05 a la de los pastizales halófilos (1.34±0.12. La riqueza de plantas en los pastizales nativos y los pastizales alterados fue superior (p<0.05 a la de las demás comunidades. Se registro una relación positiva entre la riqueza de plantas y las variables riqueza y diversidad de acridios. La similitud entre las comunidades de acridios estimada por los índices cualitativos fue superior al 60%. En general, las especies que tuvieron una mayor frecuencia de aparición, mostraron una mayor abundancia y distribución. Covasacris pallidinota, Dichroplus elongatus, D. maculipennis, Borellia bruneri y B. pallida fueron las de mayor distribución, cinco especies tuvieron una distribución intermedia y la mayoría (12 una distribución restringida.

  1. Sparrow nest survival in relation to prescribed fire and woody plant invasion in a northern mixed-grass prairie

    Science.gov (United States)

    Murphy, Robert K.; Shaffer, Terry L.; Grant, Todd A.; Derrig, James L.; Rubin, Cory S.; Kerns, Courtney K.

    2017-01-01

    Prescribed fire is used to reverse invasion by woody vegetation on grasslands, but managers often are uncertain whether influences of shrub and tree reduction outweigh potential effects of fire on nest survival of grassland birds. During the 2001–2003 breeding seasons, we examined relationships of prescribed fire and woody vegetation to nest survival of clay-colored sparrow (Spizella pallida) and Savannah sparrow (Passerculus sandwichensis) in mixed-grass prairie at Des Lacs National Wildlife Refuge in northwestern North Dakota, USA. We assessed relationships of nest survival to 1) recent fire history, in terms of number of breeding seasons (2, 3, or 4–5) since the last prescribed fire, and 2) prevalence of trees and tall (>1.5 m) shrubs in the landscape and of low (≤1.5 m) shrubs within 5 m of nests. Nest survival of both species exhibited distinct patterns related to age of the nest and day of year, but bore no relationship to fire history. Survival of clay-colored sparrow nests declined as the amount of trees and tall shrubs within 100 m increased, but we found no relationship to suggest nest parasitism by brown-headed cowbirds (Molothrus ater) as an underlying mechanism. We found little evidence linking nest survival of Savannah sparrow to woody vegetation. Our results suggest that fire can be used to restore northern mixed-grass prairies without adversely affecting nest survival of ≥2 widespread passerine species. Survival of nests of clay-colored sparrow may increase when tall woody cover is reduced by fire. Our data lend support to the use of fire for reducing scattered patches of tall woody cover to enhance survival of nests of ≥1 grassland bird species in northern mixed-grass prairies, but further study is needed that incorporates experimental approaches and assessments of shorter term effects of fire on survival of nests of grassland passerines.

  2. Symbiont dynamics during thermal acclimation using cnidarian-dinoflagellate model holobionts.

    Science.gov (United States)

    Núñez-Pons, Laura; Bertocci, Iacopo; Baghdasarian, Garen

    2017-09-01

    Warming oceans menace reef ecosystems by disrupting symbiosis between cnidarians and Symbiodinium zooxanthellae, thus triggering bleach episodes. Temperature fluctuations promote adjustments in physiological variables and symbiont composition, which can cause stress responses, but can also yield adaptation if fitter host-symbiont homeostasis are achieved. To understand such processes manipulative studies are required, but many reef-building cnidarians pose limitations to experimental prospects. We exposed Exaiptasia anemones to Gradual Thermal Stress (GTS) and Heat Shock (HS) exposures and monitored chlorophyll and symbiont dynamics to test the phenotypic plasticity of these photosynthetic holobionts. GTS enhanced chlorophyll concentrations and decreased Symbiodinium proliferation. A recovery period after GTS returned chlorophyll to lower concentrations and symbiont divisions to higher rates. HS triggered a stress response characterized by intense symbiont declines through degradation and expulsion, algal compensatory proliferation, and chlorophyll accumulation. Anemones pre-exposed to GTS displayed more acute signs of symbiont paucity after HS, demonstrating that recurrent stress does not always induce bleaching-resistance. Our study is the first documenting Symbiodinium C and D, along with the predominant Clade B1 in Exaiptasia anemones. C subclades found in outdoor specimens faded under laboratory exposures. Clade D emerged after HS treatments, and especially after GTS pre-exposure. This highlights the thermotolerance of D subclades found in E. pallida and shows that bleaching-recovery can involve shifts of background symbiont phylotypes. This study enlightens the capability of Exaiptasia anemones to acclimate to gradually increased temperatures, and explores into how thermal history influences in subsequent stress tolerance in symbiotic cnidarians. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. An ANNEXIN-like protein from the cereal cyst nematode Heterodera avenae suppresses plant defense.

    Directory of Open Access Journals (Sweden)

    Changlong Chen

    Full Text Available Parasitism genes encoding secreted effector proteins of plant-parasitic nematodes play important roles in facilitating parasitism. An annexin-like gene was isolated from the cereal cyst nematode Heterodera avenae (termed Ha-annexin and had high similarity to annexin 2, which encodes a secreted protein of Globodera pallida. Ha-annexin encodes a predicted 326 amino acid protein containing four conserved annexin domains. Southern blotting revealed that there are at least two homologies in the H. avenae genome. Ha-annexin transcripts were expressed within the subventral gland cells of the pre-parasitic second-stage juveniles by in situ hybridization. Additionally, expression of these transcripts were relatively higher in the parasitic second-stage juveniles by quantitative real-time RT-PCR analysis, coinciding with the time when feeding cell formation is initiated. Knockdown of Ha-annexin by method of barley stripe mosaic virus-based host-induced gene silencing (BSMV-HIGS caused impaired nematode infections at 7 dpi and reduced females at 40 dpi, indicating important roles of the gene in parasitism at least in early stage in vivo. Transiently expression of Ha-ANNEXIN in onion epidermal cells and Nicotiana benthamiana leaf cells showed the whole cell-localization. Using transient expression assays in N. benthamiana, we found that Ha-ANNEXIN could suppress programmed cell death triggered by the pro-apoptotic mouse protein BAX and the induction of marker genes of PAMP-triggered immunity (PTI in N. benthamiana. In addition, Ha-ANNEXIN targeted a point in the mitogen-activated protein kinase (MAPK signaling pathway downstream of two kinases MKK1 and NPK1 in N. benthamiana.

  4. De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae.

    Science.gov (United States)

    Kumar, Mukesh; Gantasala, Nagavara Prasad; Roychowdhury, Tanmoy; Thakur, Prasoon Kumar; Banakar, Prakash; Shukla, Rohit N; Jones, Michael G K; Rao, Uma

    2014-01-01

    The cereal cyst nematode (CCN, Heterodera avenae) is a major pest of wheat (Triticum spp) that reduces crop yields in many countries. Cyst nematodes are obligate sedentary endoparasites that reproduce by amphimixis. Here, we report the first transcriptome analysis of two stages of H. avenae. After sequencing extracted RNA from pre parasitic infective juvenile and adult stages of the life cycle, 131 million Illumina high quality paired end reads were obtained which generated 27,765 contigs with N50 of 1,028 base pairs, of which 10,452 were annotated. Comparative analyses were undertaken to evaluate H. avenae sequences with those of other plant, animal and free living nematodes to identify differences in expressed genes. There were 4,431 transcripts common to H. avenae and the free living nematode Caenorhabditis elegans, and 9,462 in common with more closely related potato cyst nematode, Globodera pallida. Annotation of H. avenae carbohydrate active enzymes (CAZy) revealed fewer glycoside hydrolases (GHs) but more glycosyl transferases (GTs) and carbohydrate esterases (CEs) when compared to M. incognita. 1,280 transcripts were found to have secretory signature, presence of signal peptide and absence of transmembrane. In a comparison of genes expressed in the pre-parasitic juvenile and feeding female stages, expression levels of 30 genes with high RPKM (reads per base per kilo million) value, were analysed by qRT-PCR which confirmed the observed differences in their levels of expression levels. In addition, we have also developed a user-friendly resource, Heterodera transcriptome database (HATdb) for public access of the data generated in this study. The new data provided on the transcriptome of H. avenae adds to the genetic resources available to study plant parasitic nematodes and provides an opportunity to seek new effectors that are specifically involved in the H. avenae-cereal host interaction.

  5. Heterozygote deficits in cyst plant-parasitic nematodes: possible causes and consequences.

    Science.gov (United States)

    Montarry, Josselin; Jan, Pierre-Loup; Gracianne, Cecile; Overall, Andrew D J; Bardou-Valette, Sylvie; Olivier, Eric; Fournet, Sylvain; Grenier, Eric; Petit, Eric J

    2015-04-01

    Deviations of genotypic frequencies from Hardy-Weinberg equilibrium (HWE) expectations could reveal important aspects of the biology of populations. Deviations from HWE due to heterozygote deficits have been recorded for three plant-parasitic nematode species. However, it has never been determined whether the observed deficits were due (i) to the presence of null alleles, (ii) to a high level of consanguinity and/or (iii) to a Wahlund effect. The aim of the present work was, while taking into the possible confounding effect of null alleles, to disentangle consanguinity and Wahlund effect in natural populations of those three economically important cyst nematodes using microsatellite markers: Globodera pallida, G. tabacum and Heterodera schachtii, pests of potato, tobacco and sugar beet, respectively. The results show a consistent pattern of heterozygote deficiency in the three nematode species sampled at the spatial scale of the host plant. We demonstrate that the prevalence of null alleles is weak and that heterozygote deficits do not have a single origin. Our results suggested that it is restricted dispersal that leads to heterozygote deficits through both consanguinity and substructure, which effects can be linked to soil movement, cyst density, and the number of generations per year. We discuss potential implications for the durability of plant resistances that are used to protect crops against parasites in which mating between relatives occur. While consanguineous mating leads to homozygosity at all loci, including loci governing avirulence/virulence, which favours the expression of virulence when recessive, the Wahlund effect is expected to have no particular effect on the adaptation of nematodes to resistances. © 2015 John Wiley & Sons Ltd.

  6. Varying herbivore population structure correlates with lack of local adaptation in a geographic variable plant-herbivore interaction.

    Directory of Open Access Journals (Sweden)

    Rodrigo Cogni

    Full Text Available Local adaptation of parasites to their hosts due to coevolution is a central prediction of many theories in evolutionary biology. However, empirical studies looking for parasite local adaptation show great variation in outcomes, and the reasons for such variation are largely unknown. In a previous study, we showed adaptive differentiation in the arctiid moth Utetheisa ornatrix to its host plant, the pyrrolizidine alkaloid-bearing legume Crotalaria pallida, at the continental scale, but found no differentiation at the regional scale. In the present study, we sampled the same sites to investigate factors that may contribute to the lack of differentiation at the regional scale. We performed field observations that show that specialist and non-specialist polyphagous herbivore incidence varies among populations at both scales. With a series of common-garden experiments we show that some plant traits that may affect herbivory (pyrrolizidine alkaloids and extrafloral nectaries vary at the regional scale, while other traits (trichomes and nitrogen content just vary at the continental scale. These results, combined with our previous evidence for plant population differentiation based on larval performance on fresh fruits, suggest that U. ornatrix is subjected to divergent selection even at the regional scale. Finally, with a microsatellite study we investigated population structure of U. ornatrix. We found that population structure is not stable over time: we found population differentiation at the regional scale in the first year of sampling, but not in the second year. Unstable population structure of the herbivore is the most likely cause of the lack of regional adaptation.

  7. Monitoring an outdoor smoking area by means of PM2.5 measurement and vegetal biomonitoring.

    Science.gov (United States)

    da Silveira Fleck, Alan; Carneiro, Maria Fernanda Hornos; Barbosa, Fernando; Thiesen, Flavia Valladão; Amantea, Sergio Luis; Rhoden, Claudia Ramos

    2016-11-01

    The extension of pollutant accumulation in plant leaves associated with its genotoxicity is a common approach to predict the quality of outdoor environments. However, this approach has not been used to evaluate the environmental quality of outdoor smoking areas. This study aims to evaluate the effects of environmental tobacco smoke (ETS) by assessing particulate matter 2.5 μm (PM 2.5 ) levels, the pollen abortion assay, and trace elements accumulated in plant leaves in an outdoor smoking area of a hospital. For this, PM 2.5 was measured by active monitoring with a real time aerosol monitor for 10 days. Eugenia uniflora trees were used for pollen abortion and accumulated element assays. Accumulated elements were also assessed in Tradescantia pallida leaves. The median concentration of PM 2.5 in the smoking area in all days of monitoring was 66 versus 34 μg/m 3 in the control area (P Eugenia uniflora were in higher concentration in the smoking area when compared to control area. Smoking area also showed higher rate of aborted grains (26.1 ± 10.7 %) compared with control (17.6 ± 4.5 %) (P = 0.003). Under the study conditions, vegetal biomonitoring proved to be an effective tool for assessing ETS exposure in outdoor areas. Therefore, vegetal biomonitoring of ETS could be a complement to conventional analyses and also proved to be a cheap and easy-handling tool to assess the risk of ETS exposure in outdoor areas.

  8. Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.

    Science.gov (United States)

    Kulichevskaya, Irina S; Ivanova, Anastasia A; Suzina, Natalia E; Rijpstra, W Irene C; Sinninghe Damsté, Jaap S; Dedysh, Svetlana N

    2016-02-01

    Two isolates of aerobic, budding, pink-pigmented bacteria, designated strains PX4 T and PT1, were isolated from a boreal Sphagnum peat bog and a forested tundra wetland. Cells of these strains were non-motile spheres that occurred singly or in short chains. Novel isolates were capable of growth at pH values between 3.5 and 6.5 (optimum at pH 5.0-5.5) and at temperatures between 6 and 30 °C (optimum at 15-25 °C). Most sugars and a number of polysaccharides including pectin, xylan, lichenin and Phytagel were used as growth substrates. The major fatty acids were C 16 : 0 , C 18 : 1 ω9 and C 18 : 0 ; the major polar lipids were phosphocholine and trimethylornithine. The quinone was menaquinone-6, and the G+C content of the DNA was 66 mol%. Strains PX4 T and PT1 were members of the order Planctomycetales and displayed 93-94 % 16S rRNA gene sequence similarity to Aquisphaera giovannonii , 91-92 % to species of the genus Singulisphaera and 90-91 % to Isosphaera pallida . The two novel strains, however, differed from members of these genera by cell morphology, substrate utilization pattern and a number of physiological characteristics. Based on these data, the novel isolates should be considered as representing a novel genus and species of planctomycetes, for which the name Paludisphaera borealis gen. nov., sp. nov., is proposed. The type strain is PX4 T ( = DSM 28747 T  = VKM B-2904 T ). We also suggest the establishment of a novel family, Isosphaeraceae fam. nov., to accommodate stalk-free planctomycetes with spherical cells, which can be assembled in short chains, long filaments or shapeless aggregates. This family includes the genera Isosphaera, Aquisphaera, Singulisphaera and Paludisphaera .

  9. Parallel evolution of TCP and B-class genes in Commelinaceae flower bilateral symmetry

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    Preston Jill C

    2012-03-01

    Full Text Available Abstract Background Flower bilateral symmetry (zygomorphy has evolved multiple times independently across angiosperms and is correlated with increased pollinator specialization and speciation rates. Functional and expression analyses in distantly related core eudicots and monocots implicate independent recruitment of class II TCP genes in the evolution of flower bilateral symmetry. Furthermore, available evidence suggests that monocot flower bilateral symmetry might also have evolved through changes in B-class homeotic MADS-box gene function. Methods In order to test the non-exclusive hypotheses that changes in TCP and B-class gene developmental function underlie flower symmetry evolution in the monocot family Commelinaceae, we compared expression patterns of teosinte branched1 (TB1-like, DEFICIENS (DEF-like, and GLOBOSA (GLO-like genes in morphologically distinct bilaterally symmetrical flowers of Commelina communis and Commelina dianthifolia, and radially symmetrical flowers of Tradescantia pallida. Results Expression data demonstrate that TB1-like genes are asymmetrically expressed in tepals of bilaterally symmetrical Commelina, but not radially symmetrical Tradescantia, flowers. Furthermore, DEF-like genes are expressed in showy inner tepals, staminodes and stamens of all three species, but not in the distinct outer tepal-like ventral inner tepals of C. communis. Conclusions Together with other studies, these data suggest parallel recruitment of TB1-like genes in the independent evolution of flower bilateral symmetry at early stages of Commelina flower development, and the later stage homeotic transformation of C. communis inner tepals into outer tepals through the loss of DEF-like gene expression.

  10. Contrasting physiological plasticity in response to environmental stress within different cnidarians and their respective symbionts

    Science.gov (United States)

    Hoadley, Kenneth D.; Pettay, Daniel. T.; Dodge, Danielle; Warner, Mark E.

    2016-06-01

    Given concerns surrounding coral bleaching and ocean acidification, there is renewed interest in characterizing the physiological differences across the multiple host-algal symbiont combinations commonly found on coral reefs. Elevated temperature and CO2 were used to compare physiological responses within the scleractinian corals Montipora hirsuta ( Symbiodinium C15) and Pocillopora damicornis ( Symbiodinium D1), as well as the corallimorph (a non-calcifying anthozoan closely related to scleractinians) Discosoma nummiforme ( Symbiodinium C3). Several physiological proxies were affected more by temperature than CO2, including photochemistry, algal number and cellular chlorophyll a. Marked differences in symbiont number, chlorophyll and volume contributed to distinctive patterns of chlorophyll absorption among these animals. In contrast, carbon fixation either did not change or increased under elevated temperature. Also, the rate of photosynthetically fixed carbon translocated to each host did not change, and the percent of carbon translocated to the host increased in the corallimorph. Comparing all data revealed a significant negative correlation between photosynthetic rate and symbiont density that corroborates previous hypotheses about carbon limitation in these symbioses. The ratio of symbiont-normalized photosynthetic rate relative to the rate of symbiont-normalized carbon translocation (P:T) was compared in these organisms as well as the anemone, Exaiptasia pallida hosting Symbiodinium minutum, and revealed a P:T close to unity ( D. nummiforme) to a range of 2.0-4.5, with the lowest carbon translocation in the sea anemone. Major differences in the thermal responses across these organisms provide further evidence of a range of acclimation potential and physiological plasticity that highlights the need for continued study of these symbioses across a larger group of host taxa.

  11. Integrated assessment of chemical quality and genotoxicity of the water of the Luiz Rau Stream in the lower stretch of the Sinos River Basin, in South Brazil

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    Camila Tamires Petry

    2016-11-01

    Full Text Available This study assessed the chemical quality and genotoxicity of the water of the Luiz Rau Stream in Novo Hamburgo (Rio Grande do Sul, Brazil and investigated the relationship between the genetic damage observed in Tradescantia pallida var. purpurea and the chemical parameters analyzed. Water samplings were collected bimonthly from September 2012 to March 2013 from two sites, near the headspring (S1 and near the mouth (S2. Cuttings with flower buds were exposed to water from the sites and distilled water (negative control. Micronuclei (MCN frequencies were determined in pollen mother cells. The chemical parameters analyzed were pH, total dissolved solids, biochemical oxygen demand (DBO5, dissolved oxygen, total phosphorus (TP and the trace elements cadmium, lead, copper, total chromium and zinc. In all samplings, the MCN frequencies observed in buds exposed to water from both sites were significantly higher (S1: 2.48 to 3.38, S2: 3.24 to 5.19 than those observed in the respective negative controls (1.33 to 1.62. The TP was above the legal limit throughout the monitored period and DBO5 presented concentrations higher than those established by legislation in two months at S1 and three months at S2. The principal component analysis showed a relationship between MCN frequency, DBO5 and TP, pointing to the negative influence of pollutants present in water on the bioindicator species and reinforcing the importance of considering the environmental factors in an integrated way in water-body monitoring programs.

  12. Mapping Prosopis spp. within the Tarach water basin, Turkana, Kenya using Sentinel-2 imagery

    Science.gov (United States)

    Ng, Wai-Tim; Immitzer, Markus; Floriansitz, Matthias; Vuolo, Francesco; Luminari, Luigi; Adede, Chrisgone; Wahome, Raphael; Atzberger, Clement

    2016-10-01

    Prosopis spp. are a fast growing invasive tree originating from the American dry zones, introduced to Kenya in the 1970s for the restoration of degraded pastoral lands after prolonged droughts and overgrazing. Its deep rooting system is capable of tapping into the ground water table reducing its dependency on rain water and increasing its drought tolerance. It is believed that the Prosopis invasion was eased by a hybridization process, described as the Prosopis Juliflora - Prosopis Pallida complex, suggesting that introduced Prosopis spp. evolved into a hybrid, specifically adapted to the environmental conditions, rendering it a superior and aggressive competitor to endemic species. In many dry lands in Kenya Prosopis has expanded rapidly and has become challenging to control. On the other hand, in some cases, an economic use seems possible. In both cases, detailed and accurate maps are necessary to support stakeholders and design management strategies. The aim of this study is to map the distribution of Prosopis spp. in a selected area in north-west Turkana (Kenya), covering a section of the Tarach water basin. The study is funded by the European Union through the National Drought Management Authority (NDMA) in Kenya, and the main purpose is to assess the potential production of Prosopis pods, which can be used to manufacture emergency livestock feeds to support animals during drought events. The classification was performed using novel Sentinel-2 data through a non-parametric Random Forest classifier. A selection of reference sites was visited in the field and used to train the classifier. Very high classification accuracies were obtained.

  13. Feeding on Host Plants with Different Concentrations and Structures of Pyrrolizidine Alkaloids Impacts the Chemical-Defense Effectiveness of a Specialist Herbivore.

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    Carlos H Z Martins

    Full Text Available Sequestration of chemical defenses from host plants is a strategy widely used by herbivorous insects to avoid predation. Larvae of the arctiine moth Utetheisa ornatrix feeding on unripe seeds and leaves of many species of Crotalaria (Leguminosae sequester N-oxides of pyrrolizidine alkaloids (PAs from these host plants, and transfer them to adults through the pupal stage. PAs confer protection against predation on all life stages of U. ornatrix. As U. ornatrix also uses other Crotalaria species as host plants, we evaluated whether the PA chemical defense against predation is independent of host plant use. We fed larvae from hatching to pupation with either leaves or seeds of one of eight Crotalaria species (C. incana, C. juncea, C. micans, C. ochroleuca, C. pallida, C. paulina, C. spectabilis, and C. vitellina, and tested if adults were preyed upon or released by the orb-weaving spider Nephila clavipes. We found that the protection against the spider was more effective in adults whose larvae fed on seeds, which had a higher PA concentration than leaves. The exceptions were adults from larvae fed on C. paulina, C. spectabilis and C. vitellina leaves, which showed high PA concentrations. With respect to the PA profile, we describe for the first time insect-PAs in U. ornatrix. These PAs, biosynthesized from the necine base retronecine of plant origin, or monocrotaline- and senecionine-type PAs sequestered from host plants, were equally active in moth chemical defense, in a dose-dependent manner. These results are also partially explained by host plant phylogeny, since PAs of the host plants do have a phylogenetic signal (clades with high and low PA concentrations in leaves which is reflected in the adult defense.

  14. Asociaciones de marcadores moleculares con la resistencia a enfermedades, caracteres morfológicos y agronómicos en familias diploides de papa (Solanum tuberosum L.

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    Julio Gabriel

    2016-01-01

    Full Text Available Quince familias de papa (840 genotipos provenientes de cruzas inter-específicas entre especies de Solanum stenotomum, S. goniocalyx y S. phureja  fueron genotipadas, con el objetivo de asociar  seis marcadores moleculares (GP94, HC, Nl25, Gro 1-4, RYSC3 y CP60 con genes mayores de resistencia para tizón tardío (Phytophthora infestans, verruga (Synchytrium endobioticum, nematodo - quiste (Globodera pallida y G. rostochiensis y virus PVY y PVX. Los resultados mostraron que cinco de los marcadores aplicados fueron polimórficos y amplificaron en más del 80% de las familias. El marcador RYSC3 que co-localiza con el gen Ryadg no amplificó en ninguna de las familias evaluadas. La familia 8 amplificó la banda para tres marcadores (CP60, GP94 y NL25 en la totalidad de sus clones. La prueba de χ2 se utilizó para determinar el ajuste de las proporciones de segregación de cada familia para cada marcador y genotipar los progenitores. Nueve caracteres agronómicos y morfológicos fueron evaluados en la cosecha. Mediante agrupamiento cluster fueron seleccionados 107 clones con resistencia a PVX, P. infestans, G. rostochiensis y S. endobioticum, alto rendimiento y volumen de tubérculos, elevado número de tubérculos y ojos superficiales. Sobre la base de estos resultados, aspectos prácticos para la aplicación eficiente de la selección asistida por marcadores moleculares son discutidos en este artículo.

  15. Rapid identification of emerging human-pathogenic Sporothrix species with rolling circle amplification

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    Anderson Messias Rodrigues

    2015-12-01

    Full Text Available Sporothrix infections are emerging as an important human and animal threat among otherwise healthy patients, especially in Brazil and China. Correct identification of sporotrichosis agents is beneficial for epidemiological surveillance, enabling implementation of adequate public-health policies and guiding antifungal therapy. In areas of limited resources where sporotrichosis is endemic, high-throughput detection methods that are specific and sensitive are preferred over phenotypic methods that usually result in misidentification of closely related Sporothrix species. We sought to establish rolling circle amplification (RCA as a low-cost screening tool for species-specific identification of human-pathogenic Sporothrix. We developed six species-specific padlock probes targeting polymorphisms in the gene encoding calmodulin. BLAST-searches revealed candidate probes that were conserved intraspecifically; no significant homology with sequences from humans, mice, plants or microorganisms outside members of Sporothrix were found. The accuracy of our RCA-based assay was demonstrated through the specificity of probe-template binding to 25 S. brasiliensis, 58 S. schenckii, 5 S. globosa, 1 S. luriei, 4 S. mexicana, and 3 S. pallida samples. No cross reactivity between closely related species was evident in vitro, and padlock probes yielded 100% specificity and sensitivity down to 3 x 10 6 copies of the target sequence. RCA-based speciation matched identifications via phylogenetic analysis of the gene encoding calmodulin and the rDNA operon (kappa 1.0; 95% confidence interval 1.0-1.0, supporting its use as a reliable alternative to DNA sequencing. This method is a powerful tool for rapid identification and specific detection of medically relevant Sporothrix, and due to its robustness has potential for ecological studies.

  16. Host Status of Different Potato (Solanum tuberosum) Varieties and Hatching in Root Diffusates of Globodera ellingtonae.

    Science.gov (United States)

    Zasada, Inga A; Peetz, Amy; Wade, Nadine; Navarre, Roy A; Ingham, Russ E

    2013-09-01

    Globodera ellingtonae was detected in Oregon in 2008. In order to make decisions regarding the regulation of this nematode, knowledge of its biology is required. We determined the host status of a diversity of potato (Solanum tuberosum) varieties in soil-based experiments and identified hatching stimulants in in vitro hatching assays. 'Russet Burbank,' 'Desiree,' 'Modac,' 'Norland,' 'Umatilla,' and 'Yukon Gold' were good hosts (RF > 14) for G. ellingtonae. Potato varieties 'Maris Piper,' 'Atlantic,' and 'Satina,' all which contain the Ro1 gene that confers resistance to G. rostochiensis, were not hosts for G. ellingtonae. In in vitro hatching assays, G. ellingtonae hatched readily in the presence of diffusates from potato (PRD) and tomato (Solanum lycopersicum; TRD). Egg hatch occurred in an average of between 87% and 90% of exposed cysts, with an average of between 144 and 164 juveniles emerging per cyst, from PRD- and TRD-treated cysts, respectively. This nematode hatched rapidly in the presence of PRD and TRD, with at least 66% of total hatch occurring by day 3 of exposure. There was no dose-response of egg hatch to concentrations of PRD or TRD ranging from 1:5 to 1:100 diffusate to water. When G. ellingtonae was exposed to root diffusates from 21 different plants, hatch occurred in 0% to 70% of exposed cysts, with an average of between 0 to 27 juveniles emerging per cyst. When root diffusate-exposed cysts were subsequently transferred to PRD to test viability, root diffusates from arugula (Eruca sativa), sudangrass (Sorghum bicolor subsp. drummondii), and common vetch (Vicia sativa) continued to inhibit egg hatch compared with the other root diffusates or water in which hatch occurred readily (60 to 182 juveniles emerging per cyst). Previously known hatching stimulants of G. rostochiensis and G. pallida, sodium metavanadate, sodium orthovanadate, and sodium thiocyanate, stimulated some egg hatch. Although, Globodera ellingtonae hatched readily in PRD and TRD

  17. Phylogenetic reconstruction using secondary structures of Internal Transcribed Spacer 2 (ITS2, rDNA: finding the molecular and morphological gap in Caribbean gorgonian corals

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    Sánchez Juan A

    2007-06-01

    morphological characteristics (sclerites. Eunicea flexuosa, E. pallida, E. laxispica and E. mammosa formed a separate clade in the molecular phylogenies, and were reciprocally monophyletic with respect to other Eunicea (Euniceopsis subgenus, e.g. E. tourneforti and E. laciniata in the molecular morphometrics tree, with the exception of E. fusca. Moreover, we suggest a new diagnostic character for Eunicea, also present in E. flexuosa: middle layer sclerites > 1 mm in length. Conclusion ITS2 was a reliable sequence for intrageneric studies in gorgonian octocorals because of the amount of phylogenetic signal, and was corroborated against morphological characters separating Eunicea from Plexaura. The ITS2 RNA secondary structure approach to phylogeny presented here did not rely on alignment methods such as INDELS, but provided clearly homologous characters for partition analysis and RNA molecular morphometrics. These approaches support the divergence of Eunicea flexuosa comb. nov. from the outgroup Plexaura, although it has been considered part of this outgroup for nearly two centuries because of morphological resemblance.

  18. Efetividade do ensaio Trad-MCN para avaliação de contaminantes atmosféricos em regiões brasileiras

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    Juliana Caroline Vivian Sposito

    2017-05-01

    Full Text Available A planta Tradescantia pallida (Rose D.R. Hunt var. purpurea tem sido utilizada em diversos modelos experimentais para detecção de danos morfofisiológicos e genéticos, por ser uma planta sensível a poluentes atmosféricos. No entanto, dentre os biotestes utilizados para avaliação do potencial mutagênico de contaminantes ambientais, o bioensaio de micronúcleo em Tradescantia (Trad-MCN é um dos testes mais utilizados em estudos de monitoramento das condições atmosféricas. Diante do exposto, foi realizada uma revisão de literatura, identificando regiões brasileiras que utilizaram o bioensaio de micronúcleo em Tradescantia para monitorar alterações genéticas advindas da contaminação atmosférica. O levantamento de trabalhos indexados foi realizado em bancos de referência, como Portal de Períodicos CAPES, SciELO, ScienceDirect e PubMed, sendo os mesmos investigados quanto às regiões brasileiras biomonitoradas, período, área, exposição, monitoramento ativo ou passivo e planta natural ou clone. Os resultados indicaram que pesquisas baseadas no bioensaio Trad MCN foram realizadas em diversas regiões brasileiras. Verificou-se que a maioria dos trabalhos são oriundos da região sudeste, especialmente do estado de São Paulo. Esse fato pode ser atribuído ao maior número de indústrias e automóveis em circulação existentes neste estado quando comparado aos demais, podendo interferir diretamente na qualidade do ar, despertando assim o interesse no meio científico. Com base nesta investigação, o bioensaio Trad-MCN revelou eficácia, e a planta Tradescantia demonstrou ser importante indicadora biológica de danos genéticos ocasionados pela exposição aos poluentes atmosféricos, e é amplamente utilizada na região sudeste do país.

  19. In vivo assessment of the ability of condensed tannins to interfere with the digestibility of plant protein in sheep

    Energy Technology Data Exchange (ETDEWEB)

    Andrabi, S.M.; Ritchie, M.M.; Stimson, C.; Horadagoda, A.; Hyde, M.; McNeill, D.M. [MC Franklin Laboratory, Faculty of Veterinary Science, University of Sydney, Camden, NSW (Australia)]. E-mail: karalue@bigpond.net.au

    2005-08-19

    To assess the effect of condensed tannin (CT) astringency on the digestibility of protein post-ruminally, CT were purified from four types (accessions) of Mulga (Acacia aneura), and a Leucaena pallida and dosed into sheep as complexes with {sup 15}N-plant protein (tannin-protein complexes, TPC), together with an indigestible marker, chromium-EDTA (Cr-EDTA). Each CT treatment dose comprised 12 mg CT, 10 mg {sup 15}N-protein, and 2.77 mg of Cr. A protein-only control (same as the other TPC solutions but without any CT) treatment was also included to make a total of six treatments. Treatments were applied in two 6 x 6 Latin Square designs with 72 h between each infusion for each sheep. In the first, the solutions were infused post-ruminally via an abomasal cannula. In the second they were dosed directly into the mouth following an intra-nasal dose of an analogue of vasopressin in an attempt to stimulate the oesophageal groove reflex to direct the solutions more efficiently toward the small intestine. Results showed no detectable effect of CT type on the in vivo digestibility of the {sup 15}N-protein. Protein digestibilities were uniformly high, indicative of complete dissociation of the TPC. There was no correlation between protein digestibility, mouth to faeces, and protein digestibility, abomasum to faeces (P > 0.05). In vivo digestibility was also uncorrelated with CT astringencies defined in vitro (P > 0.05). Astringency in vitro was defined as the mg of CT required to achieve half-maximal precipitation of 0.5 mg of protein (bovine serum albumin). In vitro, the most astringent CT (A. aneura 883558), had at least 1.6 times the astringency of the weakest CT (A. aneura 842394). The A. aneura with the weakest CT also contained less than 1/3 the total amount of CT/g leaf dry matter than that with the strongest, highlighting the scope for selection of more nutritionally useful types of A. aneura. Limitations of the in vivo protocol used are discussed and it is concluded

  20. Demographic Mechanisms of Reef Coral Species Winnowing from Communities under Increased Environmental Stress

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    Bernhard Riegl

    2017-10-01

    Full Text Available Winnowing of poorly-adapted species from local communities causes shifts/declines in species richness, making ecosystems increasingly ecologically depauperate. Low diversity can be associated with marginality of environments, which is increasing as climate change impacts ecosystems globally. This paper demonstrates the demographic mechanisms (size-specific mortality, growth, fertility; and metapopulation connectivity associated with population-level changes due to thermal stress extremes for five zooxanthellate reef-coral species. Effects vary among species, leading to predictable changes in population size and, consequently, community structure. The Persian/Arabian Gulf (PAG is an ecologically marginal reef environment with a subset of Indo-Pacific species, plus endemics. Local heating correlates with changes in coral population dynamics and community structure. Recent population dynamics of PAG corals were quantified in two phases (medium disturbed MD 1998–2010 and 2013–2017, severely disturbed SD 1996/8, 2010/11/12 with two stable states of declining coral frequency and cover. The strongest changes in life-dynamics, as expressed by transition matrices solved for MD and SD periods were in Acropora downingi and Porites harrisoni, which showed significant partial and whole-colony mortality (termed “shrinkers”. But in Dipsastrea pallida, Platygyra daedalea, Cyphastraea microphthalma the changes to life dynamics were more subtle, with only partial tissue mortality (termed “persisters”. Metapopulation models suggested recovery predominantly in species experiencing partial rather than whole-colony mortality. Increased frequency of disturbance caused progressive reduction in coral size, cover, and population fecundity. Also, the greater the frequency of disturbance, the more larval connectivity is required to maintain the metapopulation. An oceanographic model revealed important local larval retention and connectivity primarily between

  1. Effects of haying on breeding birds in CRP grasslands

    Science.gov (United States)

    Igl, Lawrence D.; Johnson, Douglas H.

    2016-01-01

    The Conservation Reserve Program (CRP) is a voluntary program that is available to agricultural producers to help protect environmentally sensitive or highly erodible land. Management disturbances of CRP grasslands generally are not allowed unless authorized to provide relief to livestock producers during severe drought or a similar natural disaster (i.e., emergency haying and grazing) or to improve the quality and performance of the CRP cover (i.e., managed haying and grazing). Although CRP grasslands may not be hayed or grazed during the primary bird-nesting season, these disturbances may have short-term (1 yr after disturbance) and long-term (≥2 yr after disturbance) effects on grassland bird populations. We assessed the effects of haying on 20 grassland bird species in 483 CRP grasslands in 9 counties of 4 states in the northern Great Plains, USA between 1993 and 2008. We compared breeding bird densities (as determined by total-area counts) in idle and hayed fields to evaluate changes 1, 2, 3, and 4 years after haying. Haying of CRP grasslands had either positive or negative effects on grassland birds, depending on the species, the county, and the number of years after the initial disturbance. Some species (e.g., horned lark [Eremophila alpestris], bobolink [Dolichonyx oryzivorus]) responded positively after haying, and others (e.g., song sparrow [Melospiza melodia]) responded negatively. The responses of some species changed direction as the fields recovered from haying. For example, densities for common yellowthroat (Geothlypis trichas), sedge wren (Cistothorus platensis), and clay-colored sparrow (Spizella pallida) declined the first year after haying but increased in the subsequent 3 years. Ten species showed treatment × county interactions, indicating that the effects of haying varied geographically. This long-term evaluation on the effects of haying on breeding birds provides important information on the strength and direction of changes in

  2. Characterization of Three Novel Fatty Acid- and Retinoid-Binding Protein Genes (Ha-far-1, Ha-far-2 and Hf-far-1 from the Cereal Cyst Nematodes Heterodera avenae and H. filipjevi.

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    Fen Qiao

    Full Text Available Heterodera avenae and H. filipjevi are major parasites of wheat, reducing production worldwide. Both are sedentary endoparasitic nematodes, and their development and parasitism depend strongly on nutrients obtained from hosts. Secreted fatty acid- and retinol-binding (FAR proteins are nematode-specific lipid carrier proteins used for nutrient acquisition as well as suppression of plant defenses. In this study, we obtained three novel FAR genes Ha-far-1 (KU877266, Ha-far-2 (KU877267, Hf-far-1 (KU877268. Ha-far-1 and Ha-far-2 were cloned from H. avenae, encoding proteins of 191 and 280 amino acids with molecular masses about 17 and 30 kDa, respectively and sequence identity of 28%. Protein Blast in NCBI revealed that Ha-FAR-1 sequence is 78% similar to the Gp-FAR-1 protein from Globodera pallida, while Ha-FAR-2 is 30% similar to Rs-FAR-1 from Radopholus similis. Only one FAR protein Hf-FAR-1was identified in H. filipjevi; it had 96% sequence identity to Ha-FAR-1. The three proteins are alpha-helix-rich and contain the conserved domain of Gp-FAR-1, but Ha-FAR-2 had a remarkable peptide at the C-terminus which was random-coil-rich. Both Ha-FAR-1 and Hf-FAR-1 had casein kinase II phosphorylation sites, while Ha-FAR-2 had predicted N-glycosylation sites. Phylogenetic analysis showed that the three proteins clustered together, though Ha-FAR-1 and Hf-FAR-1 adjoined each other in a plant-parasitic nematode branch, but Ha-FAR-2 was distinct from the other proteins in the group. Fluorescence-based ligand binding analysis showed the three FAR proteins bound to a fluorescent fatty acid derivative and retinol and with dissociation constants similar to FARs from other species, though Ha-FAR-2 binding ability was weaker than that of the two others. In situ hybridization detected mRNAs of Ha-far-1 and Ha-far-2 in the hypodermis. The qRT-PCR results showed that the Ha-far-1and Ha-far-2 were expressed in all developmental stages; Ha-far-1 expressed 70 times more

  3. Characterization of Three Novel Fatty Acid- and Retinoid-Binding Protein Genes (Ha-far-1, Ha-far-2 and Hf-far-1) from the Cereal Cyst Nematodes Heterodera avenae and H. filipjevi.

    Science.gov (United States)

    Qiao, Fen; Luo, Lilian; Peng, Huan; Luo, Shujie; Huang, Wenkun; Cui, Jiangkuan; Li, Xin; Kong, Lingan; Jiang, Daohong; Chitwood, David J; Peng, Deliang

    2016-01-01

    Heterodera avenae and H. filipjevi are major parasites of wheat, reducing production worldwide. Both are sedentary endoparasitic nematodes, and their development and parasitism depend strongly on nutrients obtained from hosts. Secreted fatty acid- and retinol-binding (FAR) proteins are nematode-specific lipid carrier proteins used for nutrient acquisition as well as suppression of plant defenses. In this study, we obtained three novel FAR genes Ha-far-1 (KU877266), Ha-far-2 (KU877267), Hf-far-1 (KU877268). Ha-far-1 and Ha-far-2 were cloned from H. avenae, encoding proteins of 191 and 280 amino acids with molecular masses about 17 and 30 kDa, respectively and sequence identity of 28%. Protein Blast in NCBI revealed that Ha-FAR-1 sequence is 78% similar to the Gp-FAR-1 protein from Globodera pallida, while Ha-FAR-2 is 30% similar to Rs-FAR-1 from Radopholus similis. Only one FAR protein Hf-FAR-1was identified in H. filipjevi; it had 96% sequence identity to Ha-FAR-1. The three proteins are alpha-helix-rich and contain the conserved domain of Gp-FAR-1, but Ha-FAR-2 had a remarkable peptide at the C-terminus which was random-coil-rich. Both Ha-FAR-1 and Hf-FAR-1 had casein kinase II phosphorylation sites, while Ha-FAR-2 had predicted N-glycosylation sites. Phylogenetic analysis showed that the three proteins clustered together, though Ha-FAR-1 and Hf-FAR-1 adjoined each other in a plant-parasitic nematode branch, but Ha-FAR-2 was distinct from the other proteins in the group. Fluorescence-based ligand binding analysis showed the three FAR proteins bound to a fluorescent fatty acid derivative and retinol and with dissociation constants similar to FARs from other species, though Ha-FAR-2 binding ability was weaker than that of the two others. In situ hybridization detected mRNAs of Ha-far-1 and Ha-far-2 in the hypodermis. The qRT-PCR results showed that the Ha-far-1and Ha-far-2 were expressed in all developmental stages; Ha-far-1 expressed 70 times more than Ha-far-2 in

  4. Aspectos clínico-patológicos da intoxicação experimental pelas sementes de Crotalaria mucronata (Fabaceae em bovinos Experimental poisoning by Crotalaria mucronata (Fabaceae seeds in cattle

    Directory of Open Access Journals (Sweden)

    Murilo R. Boghossian

    2007-04-01

    Full Text Available Sementes moídas de Crotalaria mucronata Desv. (=Crotalaria striata DC., Crotalaria pallida Ait., Crotalaria saltiana, com nomes populares de "xique-xique" ou "guizo-de-cascavel", foram administradas por via oral a 9 bovinos. As doses diárias de 1g/kg, 2g/kg, 3g/kg cada uma a um bovino, e 5g/kg em dois de três bovinos, dadas durante 61 a 63 dias, não causaram intoxicação. A dose de 5g/kg em um bovino, 7,5g/kg em dois bovinos e 10g/kg em um bovino, dadas durante 47-61 dias, causaram sintomas entre 47 e 80 dias após o início da administração e a morte entre 3 horas e 5 dias após o início dos sintomas. Os principais sintomas foram pulso venoso positivo da veia jugular, respiração abdominal, taquicardia, inapetência, fezes ressequidas, edema sub-mandibular e fraqueza. Os achados de necropsia foram palidez pulmonar, hidropericárdio, hidrotórax, hidroperitôneo, edema de mesentério, aumento da consistência hepática, alterações de cor do fígado, dilatação de ventrículo cardíaco direito e edema da parede ruminal. As principais alterações histológicas concentraram-se nos pulmões, sob forma de espessamento das paredes alveolares e da parede das arteríolas com diminuição da luz e fibrose periarteriolar; havia também lesões hepáticas e cardíacas de menor importância. Pode-se concluir que as principais lesões causadas pela ingestão das sementes de C. mucronata durante períodos prolongados, devem-se à dificuldade de passagem do sangue pelos vasos pulmonares em função da hipertensão arterial decorrente de fibrose e espessamento arteriolar determinada pela ação pneumotóxica da planta.Experiments were performed to define the clinical and pathological picture of prolonged administration of the seeds of Crotalaria mucronata Desv. to cattle, in order to obtain additional information about this toxicosis. The ground seeds were administered orally to 9 bovines. Doses of 1g/kg/day, 2g/kg/day, 3g/kg/day each in one bovine