WorldWideScience

Sample records for gene genealogies strongly

  1. Genealogy and gene trees.

    Science.gov (United States)

    Rasmuson, Marianne

    2008-02-01

    Heredity can be followed in persons or in genes. Persons can be identified only a few generations back, but simplified models indicate that universal ancestors to all now living persons have occurred in the past. Genetic variability can be characterized as variants of DNA sequences. Data are available only from living persons, but from the pattern of variation gene trees can be inferred by means of coalescence models. The merging of lines backwards in time leads to a MRCA (most recent common ancestor). The time and place of living for this inferred person can give insights in human evolutionary history. Demographic processes are incorporated in the model, but since culture and customs are known to influence demography the models used ought to be tested against available genealogy. The Icelandic data base offers a possibility to do so and points to some discrepancies. Mitochondrial DNA and Y chromosome patterns give a rather consistent view of human evolutionary history during the latest 100 000 years but the earlier epochs of human evolution demand gene trees with longer branches. The results of such studies reveal as yet unsolved problems about the sources of our genome.

  2. The genealogy of sequences containing multiple sites subject to strong selection in a subdivided population.

    Science.gov (United States)

    Nordborg, Magnus; Innan, Hideki

    2003-03-01

    A stochastic model for the genealogy of a sample of recombining sequences containing one or more sites subject to selection in a subdivided population is described. Selection is incorporated by dividing the population into allelic classes and then conditioning on the past sizes of these classes. The past allele frequencies at the selected sites are thus treated as parameters rather than as random variables. The purpose of the model is not to investigate the dynamics of selection, but to investigate effects of linkage to the selected sites on the genealogy of the surrounding chromosomal region. This approach is useful for modeling strong selection, when it is natural to parameterize the past allele frequencies at the selected sites. Several models of strong balancing selection are used as examples, and the effects on the pattern of neutral polymorphism in the chromosomal region are discussed. We focus in particular on the statistical power to detect balancing selection when it is present.

  3. Nuclear and mitochondrial gene genealogies and allozyme polymorphism across a major phylogeographic break in the copepod Tigriopus californicus.

    Science.gov (United States)

    Burton, R S; Lee, B N

    1994-05-24

    The genetic structure of natural populations is frequently inferred from geographic distributions of alleles at multiple gene loci. Surveys of allozyme polymorphisms in the tidepool copepod Tigriopus californicus have revealed sharp genetic differentiation of populations, indicating that gene flow among populations is highly restricted. Analysis of population structure in this species has now been extended to include nuclear and mitochondrial gene genealogies. DNA sequences of the mtDNA-encoded cytochrome-c oxidase subunit I gene from 21 isofemale lines derived from seven populations reveal a phylogeographic break between populations north and south of Point Conception, California, with sequence divergence across the break exceeding 18%, the highest level of mtDNA divergence yet reported among conspecific populations. Divergence between populations based on 22 sequences of the nuclear histone H1 gene is geographically concordant with the mitochondrial sequences. In contrast with previously studied nuclear genes in other sexually reproducing metazoans, the H1 gene genealogy from T. californicus shows no evidence of recombination. The apparent absence of intragenic recombinants probably results from the persistent lack of gene flow among geographically separated populations, a conclusion strongly supported by allozyme data and the mitochondrial gene genealogy. Despite strong population differentiation at allozyme loci, the phylogeographic break identified by the DNA sequences was not evident in the allozyme data.

  4. A Δ11 desaturase gene genealogy reveals two divergent allelic classes within the European corn borer (Ostrinia nubilalis

    Directory of Open Access Journals (Sweden)

    Harrison Richard G

    2010-04-01

    Full Text Available Abstract Background Moth pheromone mating systems have been characterized at the molecular level, allowing evolutionary biologists to study how changes in protein sequence or gene expression affect pheromone phenotype, patterns of mating, and ultimately, the formation of barriers to gene exchange. Recent studies of Ostrinia pheromones have focused on the diversity of sex pheromone desaturases and their role in the specificity of pheromone production. Here we produce a Δ11 desaturase genealogy within Ostrinia nubilalis. We ask what has been the history of this gene, and whether this history suggests that changes in Δ11 desaturase have been involved in the divergence of the E and Z O. nubilalis pheromone strains. Results The Δ11 desaturase gene genealogy does not differentiate O. nubilalis pheromone strains. However, we find two distinct clades, separated by 2.9% sequence divergence, that do not sort with pheromone strain, geographic origin, or emergence time. We demonstrate that these clades do not represent gene duplicates, but rather allelic variation at a single gene locus. Conclusions Analyses of patterns of variation at the Δ11 desaturase gene in ECB suggest that this enzyme does not contribute to reproductive isolation between pheromone strains (E and Z. However, our genealogy reveals two deeply divergent allelic classes. Standing variation at loci that contribute to mate choice phenotypes may permit novel pheromone mating systems to arise in the presence of strong stabilizing selection.

  5. Strength and tempo of selection revealed in viral gene genealogies.

    Science.gov (United States)

    Bedford, Trevor; Cobey, Sarah; Pascual, Mercedes

    2011-07-25

    RNA viruses evolve extremely quickly, allowing them to rapidly adapt to new environmental conditions. Viral pathogens, such as influenza virus, exploit this capacity for evolutionary change to persist within the human population despite substantial immune pressure. Understanding the process of adaptation in these viral systems is essential to our efforts to combat infectious disease. Through analysis of simulated populations and sequence data from influenza A (H3N2) and measles virus, we show how phylogenetic and population genetic techniques can be used to assess the strength and temporal pattern of adaptive evolution. The action of natural selection affects the shape of the genealogical tree connecting members of an evolving population, causing deviations from the neutral expectation. The magnitude and distribution of these deviations lends insight into the historical pattern of evolution and adaptation in the viral population. We quantify the degree of ongoing adaptation in influenza and measles virus through comparison of census population size and effective population size inferred from genealogical patterns, finding a 60-fold greater deviation in influenza than in measles. We also examine the tempo of adaptation in influenza, finding evidence for both continuous and episodic change. Our results have important consequences for understanding the epidemiological and evolutionary dynamics of the influenza virus. Additionally, these general techniques may prove useful to assess the strength and pattern of adaptive evolution in a variety of evolving systems. They are especially powerful when assessing selection in fast-evolving populations, where temporal patterns become highly visible.

  6. Strength and tempo of selection revealed in viral gene genealogies

    Directory of Open Access Journals (Sweden)

    Cobey Sarah

    2011-07-01

    Full Text Available Abstract Background RNA viruses evolve extremely quickly, allowing them to rapidly adapt to new environmental conditions. Viral pathogens, such as influenza virus, exploit this capacity for evolutionary change to persist within the human population despite substantial immune pressure. Understanding the process of adaptation in these viral systems is essential to our efforts to combat infectious disease. Results Through analysis of simulated populations and sequence data from influenza A (H3N2 and measles virus, we show how phylogenetic and population genetic techniques can be used to assess the strength and temporal pattern of adaptive evolution. The action of natural selection affects the shape of the genealogical tree connecting members of an evolving population, causing deviations from the neutral expectation. The magnitude and distribution of these deviations lends insight into the historical pattern of evolution and adaptation in the viral population. We quantify the degree of ongoing adaptation in influenza and measles virus through comparison of census population size and effective population size inferred from genealogical patterns, finding a 60-fold greater deviation in influenza than in measles. We also examine the tempo of adaptation in influenza, finding evidence for both continuous and episodic change. Conclusions Our results have important consequences for understanding the epidemiological and evolutionary dynamics of the influenza virus. Additionally, these general techniques may prove useful to assess the strength and pattern of adaptive evolution in a variety of evolving systems. They are especially powerful when assessing selection in fast-evolving populations, where temporal patterns become highly visible.

  7. The joint effects of background selection and genetic recombination on local gene genealogies.

    Science.gov (United States)

    Zeng, Kai; Charlesworth, Brian

    2011-09-01

    Background selection, the effects of the continual removal of deleterious mutations by natural selection on variability at linked sites, is potentially a major determinant of DNA sequence variability. However, the joint effects of background selection and genetic recombination on the shape of the neutral gene genealogy have proved hard to study analytically. The only existing formula concerns the mean coalescent time for a pair of alleles, making it difficult to assess the importance of background selection from genome-wide data on sequence polymorphism. Here we develop a structured coalescent model of background selection with recombination and implement it in a computer program that efficiently generates neutral gene genealogies for an arbitrary sample size. We check the validity of the structured coalescent model against forward-in-time simulations and show that it accurately captures the effects of background selection. The model produces more accurate predictions of the mean coalescent time than the existing formula and supports the conclusion that the effect of background selection is greater in the interior of a deleterious region than at its boundaries. The level of linkage disequilibrium between sites is elevated by background selection, to an extent that is well summarized by a change in effective population size. The structured coalescent model is readily extendable to more realistic situations and should prove useful for analyzing genome-wide polymorphism data.

  8. Gene Genealogies Within a Fixed Pedigree, and the Robustness of Kingman’s Coalescent

    Science.gov (United States)

    Wakeley, John; King, Léandra; Low, Bobbi S.; Ramachandran, Sohini

    2012-01-01

    We address a conceptual flaw in the backward-time approach to population genetics called coalescent theory as it is applied to diploid biparental organisms. Specifically, the way random models of reproduction are used in coalescent theory is not justified. Instead, the population pedigree for diploid organisms—that is, the set of all family relationships among members of the population—although unknown, should be treated as a fixed parameter, not as a random quantity. Gene genealogical models should describe the outcome of the percolation of genetic lineages through the population pedigree according to Mendelian inheritance. Using simulated pedigrees, some of which are based on family data from 19th century Sweden, we show that in many cases the (conceptually wrong) standard coalescent model is difficult to reject statistically and in this sense may provide a surprisingly accurate description of gene genealogies on a fixed pedigree. We study the differences between the fixed-pedigree coalescent and the standard coalescent by analysis and simulations. Differences are apparent in recent past, within ∼

  9. Genealogy Remediated

    DEFF Research Database (Denmark)

    Marselis, Randi

    2007-01-01

    Genealogical websites are becoming an increasingly popular genre on the Web. This chapter will examine how remediation is used creatively in the construction of family history. While remediation of different kinds of old memory materials is essential in genealogy, digital technology opens new...... and technological competences, which helps to anchor the owner within the genealogical community....

  10. Nuclear and mitochondrial gene genealogies and allozyme polymorphism across a major phylogeographic break in the copepod Tigriopus californicus.

    OpenAIRE

    Burton, R S; Lee, B. N.

    1994-01-01

    The genetic structure of natural populations is frequently inferred from geographic distributions of alleles at multiple gene loci. Surveys of allozyme polymorphisms in the tidepool copepod Tigriopus californicus have revealed sharp genetic differentiation of populations, indicating that gene flow among populations is highly restricted. Analysis of population structure in this species has now been extended to include nuclear and mitochondrial gene genealogies. DNA sequences of the mtDNA-encod...

  11. Genealogy-based methods for inference of historical recombination and gene flow and their application in Saccharomyces cerevisiae.

    Science.gov (United States)

    Jenkins, Paul A; Song, Yun S; Brem, Rachel B

    2012-01-01

    Genetic exchange between isolated populations, or introgression between species, serves as a key source of novel genetic material on which natural selection can act. While detecting historical gene flow from DNA sequence data is of much interest, many existing methods can be limited by requirements for deep population genomic sampling. In this paper, we develop a scalable genealogy-based method to detect candidate signatures of gene flow into a given population when the source of the alleles is unknown. Our method does not require sequenced samples from the source population, provided that the alleles have not reached fixation in the sampled recipient population. The method utilizes recent advances in algorithms for the efficient reconstruction of ancestral recombination graphs, which encode genealogical histories of DNA sequence data at each site, and is capable of detecting the signatures of gene flow whose footprints are of length up to single genes. Further, we employ a theoretical framework based on coalescent theory to test for statistical significance of certain recombination patterns consistent with gene flow from divergent sources. Implementing these methods for application to whole-genome sequences of environmental yeast isolates, we illustrate the power of our approach to highlight loci with unusual recombination histories. By developing innovative theory and methods to analyze signatures of gene flow from population sequence data, our work establishes a foundation for the continued study of introgression and its evolutionary relevance.

  12. Experimental estimation of mutation rates in a wheat population with a gene genealogy approach.

    Science.gov (United States)

    Raquin, Anne-Laure; Depaulis, Frantz; Lambert, Amaury; Galic, Nathalie; Brabant, Philippe; Goldringer, Isabelle

    2008-08-01

    Microsatellite markers are extensively used to evaluate genetic diversity in natural or experimental evolving populations. Their high degree of polymorphism reflects their high mutation rates. Estimates of the mutation rates are therefore necessary when characterizing diversity in populations. As a complement to the classical experimental designs, we propose to use experimental populations, where the initial state is entirely known and some intermediate states have been thoroughly surveyed, thus providing a short timescale estimation together with a large number of cumulated meioses. In this article, we derived four original gene genealogy-based methods to assess mutation rates with limited bias due to relevant model assumptions incorporating the initial state, the number of new alleles, and the genetic effective population size. We studied the evolution of genetic diversity at 21 microsatellite markers, after 15 generations in an experimental wheat population. Compared to the parents, 23 new alleles were found in generation 15 at 9 of the 21 loci studied. We provide evidence that they arose by mutation. Corresponding estimates of the mutation rates ranged from 0 to 4.97 x 10(-3) per generation (i.e., year). Sequences of several alleles revealed that length polymorphism was only due to variation in the core of the microsatellite. Among different microsatellite characteristics, both the motif repeat number and an independent estimation of the Nei diversity were correlated with the novel diversity. Despite a reduced genetic effective size, global diversity at microsatellite markers increased in this population, suggesting that microsatellite diversity should be used with caution as an indicator in biodiversity conservation issues.

  13. Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies.

    Science.gov (United States)

    Palacios, Julia A; Minin, Vladimir N

    2013-03-01

    Changes in population size influence genetic diversity of the population and, as a result, leave a signature of these changes in individual genomes in the population. We are interested in the inverse problem of reconstructing past population dynamics from genomic data. We start with a standard framework based on the coalescent, a stochastic process that generates genealogies connecting randomly sampled individuals from the population of interest. These genealogies serve as a glue between the population demographic history and genomic sequences. It turns out that only the times of genealogical lineage coalescences contain information about population size dynamics. Viewing these coalescent times as a point process, estimating population size trajectories is equivalent to estimating a conditional intensity of this point process. Therefore, our inverse problem is similar to estimating an inhomogeneous Poisson process intensity function. We demonstrate how recent advances in Gaussian process-based nonparametric inference for Poisson processes can be extended to Bayesian nonparametric estimation of population size dynamics under the coalescent. We compare our Gaussian process (GP) approach to one of the state-of-the-art Gaussian Markov random field (GMRF) methods for estimating population trajectories. Using simulated data, we demonstrate that our method has better accuracy and precision. Next, we analyze two genealogies reconstructed from real sequences of hepatitis C and human Influenza A viruses. In both cases, we recover more believed aspects of the viral demographic histories than the GMRF approach. We also find that our GP method produces more reasonable uncertainty estimates than the GMRF method.

  14. Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy

    OpenAIRE

    Keyhani Nemat O; Song Jian; Bonner Carol A; Xie Gary; Jensen Roy A

    2004-01-01

    Abstract Background The growing conviction that lateral gene transfer plays a significant role in prokaryote genealogy opens up a need for comprehensive evaluations of gene-enzyme systems on a case-by-case basis. Genes of tryptophan biosynthesis are frequently organized as whole-pathway operons, an attribute that is expected to facilitate multi-gene transfer in a single step. We have asked whether events of lateral gene transfer are sufficient to have obscured our ability to track the vertica...

  15. Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy

    Directory of Open Access Journals (Sweden)

    Keyhani Nemat O

    2004-06-01

    Full Text Available Abstract Background The growing conviction that lateral gene transfer plays a significant role in prokaryote genealogy opens up a need for comprehensive evaluations of gene-enzyme systems on a case-by-case basis. Genes of tryptophan biosynthesis are frequently organized as whole-pathway operons, an attribute that is expected to facilitate multi-gene transfer in a single step. We have asked whether events of lateral gene transfer are sufficient to have obscured our ability to track the vertical genealogy that underpins tryptophan biosynthesis. Results In 47 complete-genome Bacteria, the genes encoding the seven catalytic domains that participate in primary tryptophan biosynthesis were distinguished from any paralogs or xenologs engaged in other specialized functions. A reliable list of orthologs with carefully ascertained functional roles has thus been assembled and should be valuable as an annotation resource. The protein domains associated with primary tryptophan biosynthesis were then concatenated, yielding single amino-acid sequence strings that represent the entire tryptophan pathway. Lateral gene transfer of several whole-pathway trp operons was demonstrated by use of phylogenetic analysis. Lateral gene transfer of partial-pathway trp operons was also shown, with newly recruited genes functioning either in primary biosynthesis (rarely or specialized metabolism (more frequently. Conclusions (i Concatenated tryptophan protein trees are congruent with 16S rRNA subtrees provided that the genomes represented are of sufficiently close phylogenetic spacing. There are currently seven tryptophan congruency groups in the Bacteria. Recognition of a succession of others can be expected in the near future, but ultimately these should coalesce to a single grouping that parallels the 16S rRNA tree (except for cases of lateral gene transfer. (ii The vertical trace of evolution for tryptophan biosynthesis can be deduced. The daunting complexities engendered

  16. Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy.

    Science.gov (United States)

    Xie, Gary; Bonner, Carol A; Song, Jian; Keyhani, Nemat O; Jensen, Roy A

    2004-06-23

    The growing conviction that lateral gene transfer plays a significant role in prokaryote genealogy opens up a need for comprehensive evaluations of gene-enzyme systems on a case-by-case basis. Genes of tryptophan biosynthesis are frequently organized as whole-pathway operons, an attribute that is expected to facilitate multi-gene transfer in a single step. We have asked whether events of lateral gene transfer are sufficient to have obscured our ability to track the vertical genealogy that underpins tryptophan biosynthesis. In 47 complete-genome Bacteria, the genes encoding the seven catalytic domains that participate in primary tryptophan biosynthesis were distinguished from any paralogs or xenologs engaged in other specialized functions. A reliable list of orthologs with carefully ascertained functional roles has thus been assembled and should be valuable as an annotation resource. The protein domains associated with primary tryptophan biosynthesis were then concatenated, yielding single amino-acid sequence strings that represent the entire tryptophan pathway. Lateral gene transfer of several whole-pathway trp operons was demonstrated by use of phylogenetic analysis. Lateral gene transfer of partial-pathway trp operons was also shown, with newly recruited genes functioning either in primary biosynthesis (rarely) or specialized metabolism (more frequently). (i) Concatenated tryptophan protein trees are congruent with 16S rRNA subtrees provided that the genomes represented are of sufficiently close phylogenetic spacing. There are currently seven tryptophan congruency groups in the Bacteria. Recognition of a succession of others can be expected in the near future, but ultimately these should coalesce to a single grouping that parallels the 16S rRNA tree (except for cases of lateral gene transfer). (ii) The vertical trace of evolution for tryptophan biosynthesis can be deduced. The daunting complexities engendered by paralogy, xenology, and idiosyncrasies of

  17. The New Genealogy

    Science.gov (United States)

    Roach, Ronald

    2008-01-01

    This article reports on developments of genealogy such as the Free African Americans Web site and the genetic ancestry tracing which point to what can be called the "new genealogy." Encouraged by the Internet's unlimited capacity as an accessible publishing space, the new genealogy has seen the unprecedented growth of genealogical research…

  18. Non-equilibrium estimates of gene flow inferred from nuclear genealogies suggest that Iberian and North African wall lizards (Podarcis spp. are an assemblage of incipient species

    Directory of Open Access Journals (Sweden)

    Harris D James

    2008-02-01

    Full Text Available Abstract Background The study of recently-diverged species offers significant challenges both in the definition of evolutionary entities and in the estimation of gene flow among them. Iberian and North African wall lizards (Podarcis constitute a cryptic species complex for which previous assessments of mitochondrial DNA (mtDNA and allozyme variation are concordant in describing the existence of several highly differentiated evolutionary units. However, these studies report important differences suggesting the occurrence of gene flow among forms. Here we study sequence variation in two nuclear introns, β-fibint7 and 6-Pgdint7, to further investigate overall evolutionary dynamics and test hypotheses related to species delimitation within this complex. Results Both nuclear gene genealogies fail to define species as monophyletic. To discriminate between the effects of incomplete lineage sorting and gene flow in setting this pattern, we estimated migration rates among species using both FST-based estimators of gene flow, which assume migration-drift equilibrium, and a coalescent approach based on a model of divergence with gene flow. Equilibrium estimates of gene flow suggest widespread introgression between species, but coalescent estimates describe virtually zero admixture between most (but not all species pairs. This suggests that although gene flow among forms may have occurred the main cause for species polyphyly is incomplete lineage sorting, implying that most forms have been isolated since their divergence. This observation is therefore in accordance with previous reports of strong differentiation based on mtDNA and allozyme data. Conclusion These results corroborate most forms of Iberian and North African Podarcis as differentiated, although incipient, species, supporting a gradual view of speciation, according to which species may persist as distinct despite some permeability to genetic exchange and without having clearly definable genetic

  19. Genealogical histories in structured populations.

    Science.gov (United States)

    Kumagai, Seiji; Uyenoyama, Marcy K

    2015-06-01

    In genealogies of genes sampled from structured populations, lineages coalesce at rates dependent on the states of the lineages. For migration and coalescence events occurring on comparable time scales, for example, only lineages residing in the same deme of a geographically subdivided population can have descended from a common ancestor in the immediately preceding generation. Here, we explore aspects of genealogical structure in a population comprising two demes, between which migration may occur. We use generating functions to obtain exact densities and moments of coalescence time, number of mutations, total tree length, and age of the most recent common ancestor of the sample. We describe qualitative features of the distribution of gene genealogies, including factors that influence the geographical location of the most recent common ancestor and departures of the distribution of internode lengths from exponential.

  20. The prevalence of genome replacement in unisexual salamanders of the genus Ambystoma (Amphibia, Caudata revealed by nuclear gene genealogy

    Directory of Open Access Journals (Sweden)

    Bogart James P

    2008-05-01

    implies that it is important to the maintenance of unisexuals. Nuclear gene genealogy is a powerful tool to examine the historical interaction between sperm-dependent unisexuals and their sexual sperm donors. This methodology could be applicable to many other unisexual lineages to improve our understanding of their reproduction and their ability to persist.

  1. Genealogy and Educational Research

    Science.gov (United States)

    Christensen, Gerd

    2016-01-01

    The aim of this paper was to demonstrate how genealogy can be used as a method for critical education research. As Foucault emphasized, genealogy is a method for identifying the way in which the individuals are subjectified through discourse. The genealogical analysis in the article defines two mayor tendencies in contemporary Danish pedagogy:…

  2. Genealogy and educational research

    DEFF Research Database (Denmark)

    Christensen, Gerd

    2016-01-01

    The aim of this paper was to demonstrate how genealogy can be used as a method for critical education research. As Foucault emphasized, genealogy is a method for identifying the way in which the individuals are subjectified through discourse. The genealogical analysis in the article defines two...

  3. Genealogy and Educational Research

    Science.gov (United States)

    Christensen, Gerd

    2016-01-01

    The aim of this paper was to demonstrate how genealogy can be used as a method for critical education research. As Foucault emphasized, genealogy is a method for identifying the way in which the individuals are subjectified through discourse. The genealogical analysis in the article defines two mayor tendencies in contemporary Danish pedagogy:…

  4. Genealogy and educational research

    DEFF Research Database (Denmark)

    Christensen, Gerd

    2016-01-01

    The aim of this paper was to demonstrate how genealogy can be used as a method for critical education research. As Foucault emphasized, genealogy is a method for identifying the way in which the individuals are subjectified through discourse. The genealogical analysis in the article defines two...

  5. Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma

    Directory of Open Access Journals (Sweden)

    Whittle Carrie A

    2010-07-01

    Full Text Available Abstract Background The self-fertile filamentous ascomycete Neurospora tetrasperma contains a large (~7 Mbp and young (mat chromosomes. The objective of the present study is to reveal the evolutionary history, including key genomic events, associated with the various regions of the mat chromosomes among ten strains representing all the nine known species (lineages contained within the N. tetrasperma species complex. Results Comparative analysis of sequence divergence among alleles of 24 mat-linked genes (mat A and mat a indicates that a large region of suppressed recombination exists within the mat chromosome for each of nine lineages of N. tetrasperma sensu latu. The recombinationally suppressed region varies in size and gene composition among lineages, and is flanked on both ends by normally recombining regions. Genealogical analyses among lineages reveals that eight gene conversion events have occurred between homologous mat A and mat a-linked alleles of genes located within the region of restricted recombination during the evolutionary history of N. tetrasperma. Conclusions We conclude that the region of suppressed recombination in the mat chromosomes has likely been subjected to independent contraction and/or expansion during the evolutionary history of the N. tetrasperma species complex. Furthermore, we infer that gene conversion events are likely a common phenomenon within this recombinationally suppressed genomic region. We argue that gene conversions might provide an efficient mechanism of adaptive editing of functional genes, including the removal of deleterious mutations, within the young recombinationally suppressed region of the mat chromosomes.

  6. Sharp phylogeographic breaks and patterns of genealogical concordance in the brine shrimp Artemia franciscana.

    Science.gov (United States)

    Maniatsi, Stefania; Kappas, Ilias; Baxevanis, Athanasios D; Farmaki, Theodora; Abatzopoulos, Theodore J

    2009-12-18

    Genealogical concordance is a critical overlay of all phylogenetic analyses, irrespective of taxonomic level. To assess such patterns of congruence we have compiled and derived sequence data for two mitochondrial (16S rRNA, COI) and two nuclear (ITS1, p26) markers in 14 American populations of the hypersaline branchiopod Artemia franciscana. Cladistic analysis revealed three reciprocally monophyletic mitochondrial clades. For nuclear DNA, incomplete lineage sorting was evident presumably as a result of slower coalescence or male-mediated dispersal. Our findings capture the genealogical interval between gene splitting and population divergence. In this sense, strong indications are provided in favour of a superspecies status and ongoing speciation in A. franciscana.

  7. Intercoalescence time distribution of incomplete gene genealogies in temporally varying populations, and applications in population genetic inference.

    Science.gov (United States)

    Chen, Hua

    2013-03-01

    Tracing back to a specific time T in the past, the genealogy of a sample of haplotypes may not have reached their common ancestor and may leave m lineages extant. For such an incomplete genealogy truncated at a specific time T in the past, the distribution and expectation of the intercoalescence times conditional on T are derived in an exact form in this paper for populations of deterministically time-varying sizes, specifically, for populations growing exponentially. The derived intercoalescence time distribution can be integrated to the coalescent-based joint allele frequency spectrum (JAFS) theory, and is useful for population genetic inference from large-scale genomic data, without relying on computationally intensive approaches, such as importance sampling and Markov Chain Monte Carlo (MCMC) methods. The inference of several important parameters relying on this derived conditional distribution is demonstrated: quantifying population growth rate and onset time, and estimating the number of ancestral lineages at a specific ancient time. Simulation studies confirm validity of the derivation and statistical efficiency of the methods using the derived intercoalescence time distribution. Two examples of real data are given to show the inference of the population growth rate of a European sample from the NIEHS Environmental Genome Project, and the number of ancient lineages of 31 mitochondrial genomes from Tibetan populations.

  8. A note on the rationale for estimating genealogical coancestry from molecular markers

    Directory of Open Access Journals (Sweden)

    García-Cortés Luis

    2011-07-01

    Full Text Available Abstract Background Genetic relatedness or similarity between individuals is a key concept in population, quantitative and conservation genetics. When the pedigree of a population is available and assuming a founder population from which the genealogical records start, genetic relatedness between individuals can be estimated by the coancestry coefficient. If pedigree data is lacking or incomplete, estimation of the genetic similarity between individuals relies on molecular markers, using either molecular coancestry or molecular covariance. Some relationships between genealogical and molecular coancestries and covariances have already been described in the literature. Methods We show how the expected values of the empirical measures of similarity based on molecular marker data are functions of the genealogical coancestry. From these formulas, it is easy to derive estimators of genealogical coancestry from molecular data. We include variation of allelic frequencies in the estimators. Results The estimators are illustrated with simulated examples and with a real dataset from dairy cattle. In general, estimators are accurate and only slightly biased. From the real data set, estimators based on covariances are more compatible with genealogical coancestries than those based on molecular coancestries. A frequently used estimator based on the average of estimated coancestries produced inflated coancestries and numerical instability. The consequences of unknown gene frequencies in the founder population are briefly discussed, along with alternatives to overcome this limitation. Conclusions Estimators of genealogical coancestry based on molecular data are easy to derive. Estimators based on molecular covariance are more accurate than those based on identity by state. A correction considering the random distribution of allelic frequencies improves accuracy of these estimators, especially for populations with very strong drift.

  9. Coalescent genealogy samplers: windows into population history.

    Science.gov (United States)

    Kuhner, Mary K

    2009-02-01

    Coalescent genealogy samplers attempt to estimate past qualities of a population, such as its size, growth rate, patterns of gene flow or time of divergence from another population, based on samples of molecular data. Genealogy samplers are increasingly popular because of their potential to disentangle complex population histories. In the last decade they have been widely applied to systems ranging from humans to viruses. Findings include detection of unexpected reproductive inequality in fish, new estimates of historical whale abundance, exoneration of humans for the prehistoric decline of bison and inference of a selective sweep on the human Y chromosome. This review summarizes available genealogy-sampler software, including data requirements and limitations on the use of each program.

  10. Witchcraft, genealogy, Foucault.

    Science.gov (United States)

    Russell, S

    2001-03-01

    This paper is a genealogical reflection on both the historiography of European witchcraft and the dynamics of witchcraft trials. I argue that traditional scholarly assumptions about the 'unsophisticated' nature of early modern European mentalities result in inadequate representations of accused witches and of the social contexts and processes of the trials. Genealogy, by contrast, problematizes fundamental notions such as reason, order, power and progress in ways that not only provide a different range of effective tools for the analysis of belief in witchcraft, but also underline its crucial significance for social theory. In the final section, an analysis of a typical trial is undertaken employing key genealogical insights into confession, torture, truth, governmentality, power, pleasure and pain.

  11. Allelic genealogies in sporophytic self-incompatibility systems in plants

    DEFF Research Database (Denmark)

    Schierup, M H; Vekemans, X; Christiansen, F B

    1998-01-01

    Expectations for the time scale and structure of allelic genealogies in finite populations are formed under three models of sporophytic self-incompatibility. The models differ in the dominance interactions among the alleles that determine the self-incompatibility phenotype: In the SSIcod model...... action, and the most recessive extant allele is likely to be the most recent common ancestor. Despite these asymmetries, the expected shape of the allele genealogies does not deviate markedly from the shape of a neutral gene genealogy. The application of the results to sequence surveys of alleles...

  12. CRISPR as a strong gene editing tool.

    Science.gov (United States)

    Shen, Shengfu; Loh, Tiing Jen; Shen, Hongling; Zheng, Xuexiu; Shen, Haihong

    2017-01-01

    Clustered regularly-interspaced short palindromic repeats (CRISPR) is a new and effective genetic editing tool. CRISPR was initially found in bacteria to protect it from virus invasions. In the first step, specific DNA strands of virus are identified by guide RNA that is composed of crRNA and tracrRNA. Then RNAse III is required for producing crRNA from pre-crRNA. In The second step, a crRNA:tracrRNA:Cas9 complex guides RNase III to cleave target DNA. After cleavage of DNA by CRISPR-Cas9, DNA can be fixed by Non- Homologous End Joining (NHEJ) and Homology Directed Repair (HDR). Whereas NHEJ is simple and random, HDR is much more complex and accurate. Gene editing by CRISPR is able to be applied to various biological field such as agriculture and treating genetic diseases in human. [BMB Reports 2017; 50(1): 20-24].

  13. Repertoire, genealogy and genomic organization of cruzipain and homologous genes in Trypanosoma cruzi, T. cruzi-like and other trypanosome species.

    Science.gov (United States)

    Lima, Luciana; Ortiz, Paola A; da Silva, Flávia Maia; Alves, João Marcelo P; Serrano, Myrna G; Cortez, Alane P; Alfieri, Silvia C; Buck, Gregory A; Teixeira, Marta M G

    2012-01-01

    Trypanosoma cruzi, the agent of Chagas disease, is a complex of genetically diverse isolates highly phylogenetically related to T. cruzi-like species, Trypanosoma cruzi marinkellei and Trypanosoma dionisii, all sharing morphology of blood and culture forms and development within cells. However, they differ in hosts, vectors and pathogenicity: T. cruzi is a human pathogen infective to virtually all mammals whilst the other two species are non-pathogenic and bat restricted. Previous studies suggest that variations in expression levels and genetic diversity of cruzipain, the major isoform of cathepsin L-like (CATL) enzymes of T. cruzi, correlate with levels of cellular invasion, differentiation, virulence and pathogenicity of distinct strains. In this study, we compared 80 sequences of genes encoding cruzipain from 25 T. cruzi isolates representative of all discrete typing units (DTUs TcI-TcVI) and the new genotype Tcbat and 10 sequences of homologous genes from other species. The catalytic domain repertoires diverged according to DTUs and trypanosome species. Relatively homogeneous sequences are found within and among isolates of the same DTU except TcV and TcVI, which displayed sequences unique or identical to those of TcII and TcIII, supporting their origin from the hybridization between these two DTUs. In network genealogies, sequences from T. cruzi clustered tightly together and closer to T. c. marinkellei than to T. dionisii and largely differed from homologues of T. rangeli and T. b. brucei. Here, analysis of isolates representative of the overall biological and genetic diversity of T. cruzi and closest T. cruzi-like species evidenced DTU- and species-specific polymorphisms corroborating phylogenetic relationships inferred with other genes. Comparison of both phylogenetically close and distant trypanosomes is valuable to understand host-parasite interactions, virulence and pathogenicity. Our findings corroborate cruzipain as valuable target for drugs, vaccine

  14. Foucault – Maoism, Genealogy

    DEFF Research Database (Denmark)

    Karlsen, Mads Peter; Villadsen, Kaspar

    2015-01-01

    Foucault's inspiration from Nietzsche in terms of writing critical histories is difficult to overestimate. However, this article advances an interpretation of Foucault's approach to history which focuses on another, less readily evident, dialogue partner, namely the Marxist tradition and, more...... precisely, French Maoism. The first part of the article details Foucault's involvement in the Maoist-inspired activist group, Groupe d'information sur les prisons (GIP). It is argued that Foucault's practical experience from GIP left crucial marks on his contemporaneous statements on the genealogical method...... and his critique of “totalizing institutions,” “uniform discourse” and “juridical universality.” The second part of the article offers a close reading of Foucault's reflections on genealogy in his 1976 lecture series which demonstrates how the Maoist activist principles noticeably resonate...

  15. [Genetic aspects of genealogy].

    Science.gov (United States)

    Tetushkin, E Iu

    2011-11-01

    The supplementary historical discipline genealogy is also a supplementary genetic discipline. In its formation, genetics borrowed from genealogy some methods of pedigree analysis. In the 21th century, it started receiving contribution from computer-aided genealogy and genetic (molecular) genealogy. The former provides novel tools for genetics, while the latter, which employing genetic methods, enriches genetics with new evidence. Genealogists formulated three main laws ofgenealogy: the law of three generations, the law of doubling the ancestry number, and the law of declining ancestry. The significance and meaning of these laws can be fully understood only in light of genetics. For instance, a controversy between the exponential growth of the number of ancestors of an individual, i.e., the law of doubling the ancestry number, and the limited number of the humankind is explained by the presence of weak inbreeding because of sibs' interference; the latter causes the pedigrees' collapse, i.e., explains also the law of diminishing ancestry number. Mathematic modeling of pedigrees' collapse presented in a number of studies showed that the number of ancestors of each individual attains maximum in a particular generation termed ancestry saturated generation. All representatives of this and preceding generation that left progeny are common ancestors of all current members of the population. In subdivided populations, these generations are more ancient than in panmictic ones, whereas in small isolates and social strata with limited numbers of partners, they are younger. The genealogical law of three generations, according to which each hundred years contain on average three generation intervals, holds for generation lengths for Y-chromosomal DNA, typically equal to 31-32 years; for autosomal and mtDNA, this time is somewhat shorter. Moving along ascending lineas, the number of genetically effective ancestors transmitting their DNA fragment to descendants increases far

  16. Strong purifying selection at genes escaping X chromosome inactivation.

    Science.gov (United States)

    Park, Chungoo; Carrel, Laura; Makova, Kateryna D

    2010-11-01

    To achieve dosage balance of X-linked genes between mammalian males and females, one female X chromosome becomes inactivated. However, approximately 15% of genes on this inactivated chromosome escape X chromosome inactivation (XCI). Here, using a chromosome-wide analysis of primate X-linked orthologs, we test a hypothesis that such genes evolve under a unique selective pressure. We find that escape genes are subject to stronger purifying selection than inactivated genes and that positive selection does not significantly affect the evolution of these genes. The strength of selection does not differ between escape genes with similar versus different expression levels in males versus females. Intriguingly, escape genes possessing Y homologs evolve under the strongest purifying selection. We also found evidence of stronger conservation in gene expression levels in escape than inactivated genes. We hypothesize that divergence in function and expression between X and Y gametologs is driving such strong purifying selection for escape genes.

  17. The Astronomy Genealogy Project

    Science.gov (United States)

    Tenn, Joseph S.

    2014-01-01

    The Astronomy Genealogy Project, to be known as AstroGen, will list as many as possible of the world's astronomers with their academic parents (aka thesis advisors) and enable the reader to trace both academic ancestors and descendants. It will be very similar to the highly successful Mathematics Genealogy Project (MGP), available at http://genealogy.math.ndsu.nodak.edu. The MGP, which has been in operation since 1996, now contains the names of about 170,000 "mathematicians." These include many physicists and astronomers, as well as practitioners of related sciences. Mitchel Keller, the director of the MGP, has generously shared the software used in that project, and the American Astronomical Society (AAS) will host AstroGen, a project of the Historical Astronomy Division, on its website. We expect to start seeking entries soon, depending on the availability of computational assistance from the AAS IT department. We are seeking volunteers to help run the project. If you are interested, please contact me at joe.tenn@sonoma.edu.

  18. Sharp Phylogeographic Breaks and Patterns of Genealogical Concordance in the Brine Shrimp Artemia franciscana

    Directory of Open Access Journals (Sweden)

    Theodora Farmaki

    2009-12-01

    Full Text Available Genealogical concordance is a critical overlay of all phylogenetic analyses, irrespective of taxonomic level. To assess such patterns of congruence we have compiled and derived sequence data for two mitochondrial (16S rRNA, COI and two nuclear (ITS1, p26 markers in 14 American populations of the hypersaline branchiopod Artemia franciscana. Cladistic analysis revealed three reciprocally monophyletic mitochondrial clades. For nuclear DNA, incomplete lineage sorting was evident presumably as a result of slower coalescence or male-mediated dispersal. Our findings capture the genealogical interval between gene splitting and population divergence. In this sense, strong indications are provided in favour of a superspecies status and ongoing speciation in A. franciscana.

  19. Link between confusional migraine, hemiplegic migraine and episodic ataxia type 2: hypothesis, family genealogy, gene typing and classification.

    Science.gov (United States)

    Cleves, C; Parikh, S; Rothner, A D; Tepper, S J

    2010-06-01

    An association between hemiplegic migraine (HM) and episodic ataxia type 2 (EA2) has been described; both disorders are linked to mutations in the CACNA1A gene. Although confusion occurs in 21% of patients with HM, we found only one case in the literature of confusional episodes associated with ataxia without hemiplegia. These findings raise the possibility of confusional episodes being part of both the HM and EA2 phenotype. However, a patient with episodic ataxia, confusional spells and CACNA1A gene mutations has not been identified. We describe four individuals, spanning three generations of a family, with episodic ataxia without hemiplegia and confusion, in association with a CACNA1A mutation. We follow with a description of the relationship between the CACNA1A mutations and the three syndromes, suggesting a potential need for a new classification in which the conditions can be subsumed.

  20. Molecular systematics of higher primates: genealogical relations and classification.

    Science.gov (United States)

    Miyamoto, M M; Koop, B F; Slightom, J L; Goodman, M; Tennant, M R

    1988-01-01

    We obtained 5' and 3' flanking sequences (5.4 kilobase pairs) from the psi eta-globin gene region of the rhesus macaque (Macaca mulatta) and combined them with available nucleotide data. The completed sequence, representing 10.8 kilobase pairs of contiguous noncoding DNA, was compared to the same orthologous regions available for human (Homo sapiens, as represented by five different alleles), common chimpanzee (Pan troglodytes), gorilla (Gorilla gorilla), and orangutan (Pongo pygmaeus). The nucleotide sequence for Macaca mulatta provided the outgroup perspective needed to evaluate better the relationships of humans and great apes. Pairwise comparisons and parsimony analysis of these orthologues clearly demonstrated (i) that humans and great apes share a high degree of genetic similarity and (ii) that humans, chimpanzees, and gorillas form a natural monophyletic group. These conclusions strongly favor a genealogical classification for higher primates consisting of a single family (Hominidae) with two subfamilies (Homininae for Homo, Pan, and Gorilla and Ponginae for Pongo). PMID:3174657

  1. Genealogies of Modern Technology

    DEFF Research Database (Denmark)

    Riis, Søren

    2008-01-01

    Does modern technology differ from ancient technology and does it have a unique essence? This twofold question opens one of Martin Heidegger's most influential philosophical inquiries, The Question Concerning Technology. The answer Heidegger offers has inspired various critiques and appraisals from...... a vast number of contemporary scholars of technology.1 Heidegger's answer is traditionally thought to suggest a great difference between ancient and modern technology. However, by re-examining Heidegger's text, it is possible to discover previously ignored or misunderstood lines of thoughts that affirm...... a multi-stable interpretation of the origin of modern technology. In what follows, we shall see how The Question Concerning Technology in fact supports three different genealogies of modern technology...

  2. Genealogies of Modern Technology

    DEFF Research Database (Denmark)

    Riis, Søren

    2008-01-01

    Does modern technology differ from ancient technology and does it have a unique essence? This twofold question opens one of Martin Heidegger's most influential philosophical inquiries, The Question Concerning Technology. The answer Heidegger offers has inspired various critiques and appraisals from...... a vast number of contemporary scholars of technology.1 Heidegger's answer is traditionally thought to suggest a great difference between ancient and modern technology. However, by re-examining Heidegger's text, it is possible to discover previously ignored or misunderstood lines of thoughts that affirm...... a multi-stable interpretation of the origin of modern technology. In what follows, we shall see how The Question Concerning Technology in fact supports three different genealogies of modern technology...

  3. GENEALOGI LIBERALISASI PEMIKIRAN ISLAM

    Directory of Open Access Journals (Sweden)

    Hamid Fahmy

    2015-12-01

    Full Text Available Liberalization of islamic thought is often related to or claimed as renewal of islamic thought (tajdid, yet the term ‘liberal’ itself has no root in islamic intellectual tradition, let alone the concepts offered by this movement. The genealogy of thought that underlines this movement is traceable from the trend of postmodernism and the remnant of modernism in the West. In fact, the shift from modernism to postmodernism in the West brought about the approaches of social and human sciences studies, including religious studies. Such doctrines that came along with the trend of thought in Western postmodernism as relativism, nihilism, pluralism, equality, feminism, democratization in all respect are doctrines that played pivotal role in liberalization of religious thought in the West. Now, those doctrines are playing in the mind of the exponent of liberalization of Islamic thought with almost the same rationale with the program of secularization.

  4. Genealogi Teologi Nahdlatul Ulama

    Directory of Open Access Journals (Sweden)

    Suis Qa’im

    2014-01-01

    Full Text Available NU, the largest social and religious organization in Indonesia, has undergone many changes since its very inception decades ago. But the essence of the organization remains the same, namely its theological doctrine and “ideological” inclination toward the Sunna. This paper tries to speak of the struggle of NU in this changing era to remain as it is. It traces the theological genealogy of the organization, and how this theology has been transformed from time to time to meet the demands of Indonesian setting. Here NU is understood as a dynamic religious organization capable of translating certain theology and ideology into a totally different look. Hence, although it was originated in the theology of al-Asy’ariyyah and al-Maturidiyah, NU was not at all representing any of these two Middle Eastern theologies. Unlike the two, NU emphasizes theoretically the idea of justice, moderation, and tolerance while practically upholding the adaptive and adoptive attitude toward local customs and traditions.

  5. Genealogical Sources for England and Wales.

    Science.gov (United States)

    Wuehler, Anne

    1989-01-01

    Describes genealogical research for English and Welch ancestry and provides a bibliography of reference sources. Topics discussed include the research process, genealogical research in general, civil registration, census records, ecclesiastical and church records, and probate records. (LRW)

  6. 8 CFR 103.38 - Genealogy Program.

    Science.gov (United States)

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Genealogy Program. 103.38 Section 103.38...; AVAILABILITY OF RECORDS § 103.38 Genealogy Program. (a) Purpose. The Department of Homeland Security, U.S. Citizenship and Immigration Services Genealogy Program is a fee-for-service program designed to...

  7. Statistical Properties of Genealogical Trees

    Science.gov (United States)

    Derrida, Bernard; Manrubia, Susanna C.; Zanette, Damián H.

    1999-03-01

    We analyze the statistical properties of genealogical trees in a neutral model of a closed population with sexual reproduction and nonoverlapping generations. By reconstructing the genealogy of an individual from the population evolution, we measure the distribution of ancestors appearing more than once in a given tree. After a transient time, the probability of repetition follows, up to a rescaling, a stationary distribution which we calculate both numerically and analytically. This distribution exhibits a universal shape with a nontrivial power law which can be understood by an exact, though simple, renormalization calculation. Some real data on human genealogy illustrate the problem, which is relevant to the study of the real degree of diversity in closed interbreeding communities.

  8. The genealogy of samples in models with selection.

    Science.gov (United States)

    Neuhauser, C; Krone, S M

    1997-02-01

    We introduce the genealogy of a random sample of genes taken from a large haploid population that evolves according to random reproduction with selection and mutation. Without selection, the genealogy is described by Kingman's well-known coalescent process. In the selective case, the genealogy of the sample is embedded in a graph with a coalescing and branching structure. We describe this graph, called the ancestral selection graph, and point out differences and similarities with Kingman's coalescent. We present simulations for a two-allele model with symmetric mutation in which one of the alleles has a selective advantage over the other. We find that when the allele frequencies in the population are already in equilibrium, then the genealogy does not differ much from the neutral case. This is supported by rigorous results. Furthermore, we describe the ancestral selection graph for other selective models with finitely many selection classes, such as the K-allele models, infinitely-many-alleles models. DNA sequence models, and infinitely-many-sites models, and briefly discuss the diploid case.

  9. Invented genealogies as political mythologies: definitionand examples

    Directory of Open Access Journals (Sweden)

    Filip-Lucian Iorga

    2012-10-01

    Full Text Available The genealogical imaginary is a subcategory of the imaginary referring to the origin and it comprises a wide range of genealogical myths: fictitious ancestors, whether divine or human, fabulous kinships, invented genealogies, descendancies which are impossible to certify with documents, erroneous interpretations of certain degrees of kinship, real genealogies that have received unexpected interpretations and historiographic clichés grown on more or less attestable genealogies. The case of the Balş family is one of the most interesting: trying to integrate in the political structures of the Austrian and Russian Empire, some members of this old Moldavian family invent a fictitious genealogy that links the French counts of Baux, the Balsa family, a Serbian medieval dynasty and the Balş family, Moldavian boyars.

  10. On Constructing Seminal Paper Genealogy.

    Science.gov (United States)

    Bae, Duck-Ho; Hwang, Se-Mi; Kim, Sang-Wook; Faloutsos, Christos

    2014-01-01

    Let us consider that someone is starting a research on a topic that is unfamiliar to them. Which seminal papers have influenced the topic the most? What is the genealogy of the seminal papers in this topic? These are the questions that they can raise, which we try to answer in this paper. First, we propose an algorithm that finds a set of seminal papers on a given topic. We also address the performance and scalability issues of this sophisticated algorithm. Next, we discuss the measures to decide how much a paper is influenced by another paper. Then, we propose an algorithm that constructs a genealogy of the seminal papers by using the influence measure and citation information. Finally, through extensive experiments with a large volume of a real-world academic literature data, we show the effectiveness and efficiency of our approach.

  11. LAMMPS strong scaling performance optimization on Blue Gene/Q

    Energy Technology Data Exchange (ETDEWEB)

    Coffman, Paul; Jiang, Wei; Romero, Nichols A.

    2014-11-12

    LAMMPS "Large-scale Atomic/Molecular Massively Parallel Simulator" is an open-source molecular dynamics package from Sandia National Laboratories. Significant performance improvements in strong-scaling and time-to-solution for this application on IBM's Blue Gene/Q have been achieved through computational optimizations of the OpenMP versions of the short-range Lennard-Jones term of the CHARMM force field and the long-range Coulombic interaction implemented with the PPPM (particle-particle-particle mesh) algorithm, enhanced by runtime parameter settings controlling thread utilization. Additionally, MPI communication performance improvements were made to the PPPM calculation by re-engineering the parallel 3D FFT to use MPICH collectives instead of point-to-point. Performance testing was done using an 8.4-million atom simulation scaling up to 16 racks on the Mira system at Argonne Leadership Computing Facility (ALCF). Speedups resulting from this effort were in some cases over 2x.

  12. 38 CFR 1.505 - Genealogy.

    Science.gov (United States)

    2010-07-01

    ... 38 Pensions, Bonuses, and Veterans' Relief 1 2010-07-01 2010-07-01 false Genealogy. 1.505 Section 1.505 Pensions, Bonuses, and Veterans' Relief DEPARTMENT OF VETERANS AFFAIRS GENERAL PROVISIONS Release of Information from Department of Veterans Affairs Claimant Records § 1.505 Genealogy....

  13. Strong association between pseudogenization mechanisms and gene sequence length

    Directory of Open Access Journals (Sweden)

    Harrison Paul M

    2009-10-01

    Full Text Available Abstract Pseudogenes arise from the decay of gene copies following either RNA-mediated duplication (processed pseudogenes or DNA-mediated duplication (nonprocessed pseudogenes. Here, we show that long protein-coding genes tend to produce more nonprocessed pseudogenes than short genes, whereas the opposite is true for processed pseudogenes. Protein-coding genes longer than 3000 bp are 6 times more likely to produce nonprocessed pseudogenes than processed ones. Reviewers This article was reviewed by Dr. Dan Graur and Dr. Craig Nelson (nominated by Dr. J Peter Gogarten.

  14. 8 CFR 103.40 - Genealogical Research Requests.

    Science.gov (United States)

    2010-01-01

    .... Genealogy requests are requests for searches and/or copies of historical records relating to a deceased person, usually for genealogy and family history research purposes. (b) Manner of requesting genealogical searches and records. Requests must be submitted on Form G-1041, Genealogy Index Search Request, or Form...

  15. Impact of strong selection for the PrP major gene on genetic variability of four French sheep breeds (Open Access publication

    Directory of Open Access Journals (Sweden)

    Pantano Thais

    2008-11-01

    Full Text Available Abstract Effective selection on the PrP gene has been implemented since October 2001 in all French sheep breeds. After four years, the ARR "resistant" allele frequency increased by about 35% in young males. The aim of this study was to evaluate the impact of this strong selection on genetic variability. It is focussed on four French sheep breeds and based on the comparison of two groups of 94 animals within each breed: the first group of animals was born before the selection began, and the second, 3–4 years later. Genetic variability was assessed using genealogical and molecular data (29 microsatellite markers. The expected loss of genetic variability on the PrP gene was confirmed. Moreover, among the five markers located in the PrP region, only the three closest ones were affected. The evolution of the number of alleles, heterozygote deficiency within population, expected heterozygosity and the Reynolds distances agreed with the criteria from pedigree and pointed out that neutral genetic variability was not much affected. This trend depended on breed, i.e. on their initial states (population size, PrP frequencies and on the selection strategies for improving scrapie resistance while carrying out selection for production traits.

  16. Legendary genealogies of Byzantine Emperors and their families

    Directory of Open Access Journals (Sweden)

    Krsmanović Bojana T.

    2004-01-01

    a rule, the genealogies postulate a kinship with him, often confirming it with the alleged physical resemblance. Depending on the purpose of the genealogy, certain purported features of Constantine's character were emphasized, so that he is alternately mentioned as a protector of the Christian faith, a triumphant military leader, or as a wise administrator of the Empire. Apart from that, the motifs of founding the new Capital and the migration of the Roman patrician families to Constantinople represent important topoi in this literary genre. The two most fascinating specimens of legendary genealogies in the Byzantine literature — those of Basil I the Macedonian and Nikephoros III Botaneiates — show that the choice of the elements of which the genealogy is composed (personality, family, dynasty is at the same time a strong indication of the reason why it was composed in the first place. The genealogy of Basil the Macedonian was doubtlessly conceived by more than one person. It is quite certain that the idea to compose it originally came from Photios and was taken over by Basil's descendents — his son Leo VI and his grandson Constantine VII Porphyrogennetos. The core of Basil's legendary genealogy is the story of his origin from the Parthian-Armenian dynasty of Arsacids (an indication of the Armenian origin of the founder of the Macedonian dynasty?. Constantine Porphyrogennetos elaborated this story further, describing in some detail the fate of Arsac's descendents, to whom Basil was allegedly related on his father's side, in the Byzantine Empire. This, of course, does not mean that he forgot to create connections between his grandfather and the standard legendary ancestors, like Constantine the Great (on Basil's mother's side and Alexander the Great (the common ancestors of both Basil's parents. This apocryphal family tree certainly has its roots in the fact that the founder of the Macedonian dynasty was a parvenu of low origin, whose ascent to the throne was

  17. Genealogical Trees of Scientific Papers.

    Science.gov (United States)

    Waumans, Michaël Charles; Bersini, Hugues

    2016-01-01

    Many results have been obtained when studying scientific papers citations databases in a network perspective. Articles can be ranked according to their current in-degree and their future popularity or citation counts can even be predicted. The dynamical properties of such networks and the observation of the time evolution of their nodes started more recently. This work adopts an evolutionary perspective and proposes an original algorithm for the construction of genealogical trees of scientific papers on the basis of their citation count evolution in time. The fitness of a paper now amounts to its in-degree growing trend and a "dying" paper will suddenly see this trend declining in time. It will give birth and be taken over by some of its most prevalent citing "offspring". Practically, this might be used to trace the successive published milestones of a research field.

  18. Genealogical Trees of Scientific Papers.

    Directory of Open Access Journals (Sweden)

    Michaël Charles Waumans

    Full Text Available Many results have been obtained when studying scientific papers citations databases in a network perspective. Articles can be ranked according to their current in-degree and their future popularity or citation counts can even be predicted. The dynamical properties of such networks and the observation of the time evolution of their nodes started more recently. This work adopts an evolutionary perspective and proposes an original algorithm for the construction of genealogical trees of scientific papers on the basis of their citation count evolution in time. The fitness of a paper now amounts to its in-degree growing trend and a "dying" paper will suddenly see this trend declining in time. It will give birth and be taken over by some of its most prevalent citing "offspring". Practically, this might be used to trace the successive published milestones of a research field.

  19. BRCA1 gene variant p.P142H associated with male breast cancer: a two-generation genealogic study and literature review.

    Science.gov (United States)

    Spinelli, Claudio; Strambi, Silvia; Piccini, Lorenzo; Rossi, Leonardo; Aretini, Paolo; Caligo, Adelaide

    2015-12-01

    Breast cancer occurs rarely in male patient. BRCA1 gene mutation seems to be related to male breast cancer, but its role is not clearly defined. We have identified in a male patient affected by breast cancer the BRCA1 gene variant p.P142H. We performed a literature research using the keywords "male breast cancer", "male breast cancer mutations" and "BRCA" and we reviewed the cases. We found ew other studies regarding BRCA1 variant p.P142H, about female subjects. At the moment, BRCA1 gene variant p.P142H is not certainly classified as neutral or deleterious. Genetic testing for BRCA1 and BRCA2 and PALB2 mutation gene has been performed on our patient. Segregation analysis for this p.P142H BRCA1 variant has been extended to the second generation of the family. Genetic tests revealed a clear inheritance regarding the BRCA1 gene p. P142H variant. Of the eight patients with this specific genetic mutation, four presented breast cancer (bilateral in one case), two female and two male. None of the subjects in the family without the BRCA1 gene variant p. P142H presented breast cancer or other BRCA1 gene mutation-related cancers. Our analysis suggests that the BRCA1 gene variant p.P142H mutation is related with male breast cancer. Starting from these data, it can be inferred that more studies on MBC and its relation with the BRCA1 gene mutation P142H variant must be undertaken to improve prognostic and therapeutic strategies.

  20. Kinship and Beyond: The Genealogical Model Reconsidered

    Directory of Open Access Journals (Sweden)

    Ryan Schram

    2010-08-01

    Full Text Available Review of Kinship and Beyond: The Genealogical Model Reconsidered. Sandra Bamford and James Leach, eds. 2009. Berghahn Books, New York. 292 pp., 21 illustrations, bibliography, index. $95.00 (hardback. ISBN 9781845454227.

  1. Genealogical analyses in open populations: the case of three Arab-derived Spanish horse breeds.

    Science.gov (United States)

    Cervantes, I; Gutiérrez, J P; Molina, A; Goyache, F; Valera, M

    2009-10-01

    This research assesses the genetic composition of three Arab-derived Spanish horse breeds as an example to highlight the major shortcomings related to genealogical analyses in open populations and to propose approaches useful to deal with this task. The studbooks of three Spanish Arab (SA)-derived horse breeds, Spanish Anglo-Arab (dAA), Hispano-Arab (dHA) and Spanish Sport Horse (dSSH) and those of their parental breeds SA, Spanish Purebred (SPB) and Thoroughbred (TB), totalling 211 754 individuals, were available. The genealogies of the dAA, dHA and dSSH were analysed not only using the corresponding studbook (breed exclusive dataset) but also including the genealogies of the founders from parental breeds (completed dataset). Coancestry analyses revealed that the present SA-derived populations share more genes with the Arab than with the other parental breeds. Effective population size was computed by accounting for migration rates to obtain an equivalent closed-population effective size ((eq)N(e)) of 39.2 for the dAA, 56.3 for dHA and 114.1 for dSSH. The essayed methodologies were useful for characterising populations involving migration. The consequences of the management of the analysed breeds are discussed. The results emphasize the need to include the complete genealogies of the individuals to attain reliable genealogical parameters.

  2. 8 CFR 103.41 - Genealogy request fees.

    Science.gov (United States)

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Genealogy request fees. 103.41 Section 103...; AVAILABILITY OF RECORDS § 103.41 Genealogy request fees. (a) Genealogy search fee. See 8 CFR 103.7(b)(1). (b) Genealogy records fees. See 8 CFR 103.7(b)(1). (c) Manner of submission. When a request is submitted...

  3. Genealogy and fine mapping of obscuravenosa, a gene affecting the distribution of chloroplasts in leaf veins, and evidence of selection during breeding of tomatoes (Lycopersicon esculentum; Solanaceae).

    Science.gov (United States)

    Jones, Carl M; Rick, Charles M; Adams, Dawn; Jernstedt, Judy; Chetelat, Roger T

    2007-06-01

    In the processes of plant domestication and variety development, some traits are under direct selection, while others may be introduced by indirect selection or linkage. In the cultivated tomato (Lycopersicon esculentum = Solanum lycopersicum), and all other Solanaceae examined, chloroplasts are normally absent from subepidermal and mesophyll cells surrounding the leaf veins, and thus, veins appear clear upon subillumination. The tomato mutant obscuravenosa (obv), in contrast, contains chloroplasts in cells around the vein, and thus, veins appear as dark as the surrounding leaf tissue. Among tomato cultivars, the obv allele is common in processing varieties bred for mechanical harvest, but is otherwise rare. We traced the source of obv in processing tomatoes to the cultivar Earliana, released in the 1920s. The obv locus was mapped to chromosome 5, bin 5G, using introgression lines containing single chromosome segments from the wild species L. pennellii. This region also contains a quantitative trait locus (QTL) for plant height, pht5.4, which cosegregated with SP5G, a paralog of self-pruning (sp), the gene that controls the switch between determinate and indeterminate growth in tomato. The pht5.4 QTL was partially dominant and associated with a reduced percentage of red fruit at harvest. Our data suggest that the prevalence of obv in nearly all processing varieties may have resulted from its tight linkage to a QTL conferring a more compact, and horticulturally desirable, plant habit.

  4. Narrative Reflection in the Philosophy of Teaching: Genealogies and Portraits

    Science.gov (United States)

    McEwan, Hunter

    2011-01-01

    How has philosophical reflection contributed to the ways that we think about teaching? In this paper I explore two forms of narrative reflection on teaching--genealogies and portraits. Genealogies tell a story about the origins of teaching; portraits find expression in myths and other narrative forms. I explore two genealogies of teaching--one…

  5. Genealogical information and the structure of rural Latin-American populations: reality and fantasy.

    Science.gov (United States)

    Castilla, E E; Adams, J

    1996-01-01

    Genetic data organized in the form of genealogies can provide much information regarding the history and genetic structure of human populations. A large proportion of the population of Latin America is organized in small rural semi-isolated communities, with little immigration, and until the last 50-100 years, little emigration. These communities have a strong sense of their genealogical history, and this "genealogical conscience' is a frequent leitmotif in modern Latin-American literature. In this communication, we compare the characteristics of fictitious genealogies described in two masterpieces of Latin-American literature, García Márquez' Cien Años de Soledad (A Hundred Years of Solitude), and Verissimo's O Tempo e o Vento (Time and the Wind), with one existing well-studied population in Argentina, Aicuña. All three populations exhibit a number of common characteristics, such as histories of long periods of civil war, and large pedigrees with complex paths of inheritance resulting in complex patterns of inbreeding. Genetic themes common to all three are: (1) the use of genealogical records to substantiate the property of the land or the political power of a kinship; (2) the genealogical registry of biological descendants, independent of their legal or marital status in the clan; (3) the existence of pedigrees of the aristocratic branches in the same kindreds, which illustrate the legal principle of primogeniture; (4) the value of last names as indicators of kinships and the extent of genetic isolation, and (5) the awareness of the deleterious consequences of consanguinity.

  6. The Total Somali Clan Genealogy (second edition)

    NARCIS (Netherlands)

    Abbink, J.

    2009-01-01

    This paper presents an updated genealogy of all Somali 'clans'. Somali kinship is based on patrilineal descent or 'tol', but there are no equivalents in the Somali language for the words 'clan' and 'lineage'. The Somali terminology for the levels of social segmentation is complex, amongst others bec

  7. Genetic genealogy: the Woodson family's experience.

    Science.gov (United States)

    Williams, Sloan R

    2005-06-01

    In 1998, Foster and colleagues published the results of a genetic study intended to test whether Thomas Jefferson could have fathered any of Sally Hemings' children. They found that the Jefferson Y chromosome haplotype matched that of a descendant of Hemings' youngest child, but not that of the descendants of the eldest son, Thomas Woodson. The Woodson descendants were shocked by the study's finding, which disagreed with their family oral history. They were suspicious of the study conclusions because of the methods used in recruiting participants for the study and the manner in which they learned of the results. The Woodsons' experience as participants in one of the first examples of genetic genealogy illustrates several issues that both geneticists and amateur genetic genealogists will face in studies of this kind. Misperceptions about the relationship between biology and race, and group genetics in general, can make the interpretation of genetic data difficult. Continuing collaborations between the media and the scientific community will help the public to better understand the risks as well as the benefits of genetic genealogy. Researchers must decide prior to beginning their research what role the human subjects will play in the study and when they will be notified of the study's conclusions. Amateur genetic genealogists should anticipate unexpected outcomes, such as the identification of nonpaternity, to minimize any harmful effects to study participants. Although modern genetic methods provide a powerful new tool for genealogical study, they cannot resolve all genealogical issues, as this study shows, and can involve unanticipated risks to the participants.

  8. "Safeguarding" Sports Coaching: Foucault, Genealogy and Critique

    Science.gov (United States)

    Garratt, Dean; Piper, Heather; Taylor, Bill

    2013-01-01

    This paper offers a genealogical account of safeguarding in sport. Drawing specifically on Foucault's work, it examines the "politics of touch" in relation to the social and historical formation of child protection policy in sports coaching. While the analysis has some resonance with the context of coaching as a whole, for illustrative…

  9. Modeling the genealogy of a cultural trait.

    Science.gov (United States)

    Aguilar, Elliot; Ghirlanda, Stefano

    2015-05-01

    The mathematical study of genealogies has yielded important insights in population biology, such as the ability to estimate the time to the most recent common ancestor (MRCA) of a sample of genetic sequences or of a group of individuals. Here we introduce a model of cultural genealogies that is a step toward answering similar questions for cultural traits. In our model individuals can inherit from a variable, potentially large number of ancestors, rather than from a fixed, small number of ancestors (one or two) as is typical of genetic evolution. We first show that, given a sample of individuals, a cultural common ancestor does not necessarily exist. We then introduce a related concept: the most recent unique ancestor (MRUA), i.e., the most recent single individual who is the earliest cultural ancestor of the sample. We show that, under neutral evolution, the time to the MRUA can be staggeringly larger than the time to MRCA in a single ancestor model, except when the average number of learning opportunities per individuals is small. Our results point out that the properties of cultural genealogies may be very different from those of genetic genealogies, with potential implications for reconstructing the histories of cultural traits.

  10. "Lolita": Genealogy of a Cover Girl

    Science.gov (United States)

    Savage, Shari L.

    2015-01-01

    At the publication of Vladimir Nabokov's controversial novel "Lolita" (1958), the author insisted that a girl never appear on the cover. This discourse analysis of 185 "Lolita" book covers, most of which feature a girl, considers the genealogy of "Lolita" in relation to representation, myth, and tacit knowledge…

  11. On the Genealogy of Asexual Diploids

    Science.gov (United States)

    Lam, Fumei; Langley, Charles H.; Song, Yun S.

    Given molecular genetic data from diploid individuals that, at present, reproduce mostly or exclusively asexually without recombination, an important problem in evolutionary biology is detecting evidence of past sexual reproduction (i.e., meiosis and mating) and recombination (both meiotic and mitotic). However, currently there is a lack of computational tools for carrying out such a study. In this paper, we formulate a new problem of reconstructing diploid genealogies under the assumption of no sexual reproduction or recombination, with the ultimate goal being to devise genealogy-based tools for testing deviation from these assumptions. We first consider the infinite-sites model of mutation and develop linear-time algorithms to test the existence of an asexual diploid genealogy compatible with the infinite-sites model of mutation, and to construct one if it exists. Then, we relax the infinite-sites assumption and develop an integer linear programming formulation to reconstruct asexual diploid genealogies with the minimum number of homoplasy (back or recurrent mutation) events. We apply our algorithms on simulated data sets with sizes of biological interest.

  12. "Lolita": Genealogy of a Cover Girl

    Science.gov (United States)

    Savage, Shari L.

    2015-01-01

    At the publication of Vladimir Nabokov's controversial novel "Lolita" (1958), the author insisted that a girl never appear on the cover. This discourse analysis of 185 "Lolita" book covers, most of which feature a girl, considers the genealogy of "Lolita" in relation to representation, myth, and tacit knowledge…

  13. Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies

    DEFF Research Database (Denmark)

    Lal, Dennis; Ruppert, Ann-Kathrin; Trucks, Holger

    2015-01-01

    -18, OR = 4.6) or an evolutionarily conserved brain-expressed gene related to autism spectrum disorder (P = 1.3 x 10-12, OR = 4.1) were significantly enriched in the GGE patients. Microdeletions found only in GGE patients harboured a high proportion of genes previously associated with epilepsy...... a strong impact of fundamental neurodevelopmental processes in the pathogenesis of common GGE syndromes....

  14. Strong motion deficits in dyslexia associated with DCDC2 gene alteration.

    Science.gov (United States)

    Cicchini, Guido Marco; Marino, Cecilia; Mascheretti, Sara; Perani, Daniela; Morrone, Maria Concetta

    2015-05-27

    Dyslexia is a specific impairment in reading that affects 1 in 10 people. Previous studies have failed to isolate a single cause of the disorder, but several candidate genes have been reported. We measured motion perception in two groups of dyslexics, with and without a deletion within the DCDC2 gene, a risk gene for dyslexia. We found impairment for motion particularly strong at high spatial frequencies in the population carrying the deletion. The data suggest that deficits in motion processing occur in a specific genotype, rather than the entire dyslexia population, contributing to the large variability in impairment of motion thresholds in dyslexia reported in the literature.

  15. Genealogies in simple models of evolution

    Science.gov (United States)

    Brunet, Éric; Derrida, Bernard

    2013-01-01

    We review the statistical properties of the genealogies of a few models of evolution. In the asexual case, selection leads to coalescence times which grow logarithmically with the size of the population, in contrast with the linear growth of the neutral case. Moreover for a whole class of models, the statistics of the genealogies are those of the Bolthausen-Sznitman coalescent rather than the Kingman coalescent in the neutral case. For sexual reproduction in the neutral case, the time to reach the first common ancestors for the whole population and the time for all individuals to have all their ancestors in common are also logarithmic in the population size, as predicted by Chang in 1999. We discuss how these times are modified by introducing selection in a simple way.

  16. GeneaQuilts: a system for exploring large genealogies.

    Science.gov (United States)

    Bezerianos, Anastasia; Dragicevic, Pierre; Fekete, Jean-Daniel; Bae, Juhee; Watson, Ben

    2010-01-01

    GeneaQuilts is a new visualization technique for representing large genealogies of up to several thousand individuals. The visualization takes the form of a diagonally-filled matrix, where rows are individuals and columns are nuclear families. After identifying the major tasks performed in genealogical research and the limits of current software, we present an interactive genealogy exploration system based on GeneaQuilts. The system includes an overview, a timeline, search and filtering components, and a new interaction technique called Bring & Slide that allows fluid navigation in very large genealogies. We report on preliminary feedback from domain experts and show how our system supports a number of their tasks.

  17. Probabilistic models of population evolution scaling limits, genealogies and interactions

    CERN Document Server

    Pardoux, Étienne

    2016-01-01

    This expository book presents the mathematical description of evolutionary models of populations subject to interactions (e.g. competition) within the population. The author includes both models of finite populations, and limiting models as the size of the population tends to infinity. The size of the population is described as a random function of time and of the initial population (the ancestors at time 0). The genealogical tree of such a population is given. Most models imply that the population is bound to go extinct in finite time. It is explained when the interaction is strong enough so that the extinction time remains finite, when the ancestral population at time 0 goes to infinity. The material could be used for teaching stochastic processes, together with their applications. Étienne Pardoux is Professor at Aix-Marseille University, working in the field of Stochastic Analysis, stochastic partial differential equations, and probabilistic models in evolutionary biology and population genetics. He obtai...

  18. [Fragments of a health work genealogy: genealogy as a research technique].

    Science.gov (United States)

    Nardi, Henrique Caetano; Tittoni, Jaqueline; Giannechini, Letícia; Ramminger, Tatiana

    2005-01-01

    The article aims to explore the influence of health work in subjectification processes. The notion of history commonly used in health-related scientific output is based on an evolutionist and developmental logic. As a counterpoint, the genealogical approach used in this article and based on Michel Foucault highlights the notions of discontinuity, event, and the production of truth as tools to rethink the ethical and political implications involved in the production of knowledge, practices, and subjects. To illustrate these aspects we sketch a health work genealogy, specifically in the field of mental health and HIV/AIDS work.

  19. Comparing models on the genealogical relationships among Neandertal, Cro-Magnoid and modern Europeans by serial coalescent simulations.

    Science.gov (United States)

    Belle, E M S; Benazzo, A; Ghirotto, S; Colonna, V; Barbujani, G

    2009-03-01

    Populations of anatomically archaic (Neandertal) and early modern (Cro-Magnoid) humans are jointly documented in the European fossil record, in the period between 40 000 and 25 000 years BP, but the large differences between their cultures, morphologies and DNAs suggest that the two groups were not close relatives. However, it is still unclear whether any genealogical continuity between them can be ruled out. Here, we simulated a broad range of demographic scenarios by means of a serial coalescence algorithm in which Neandertals, Cro-Magnoids and modern Europeans were either part of the same mitochondrial genealogy or of two separate genealogies. Mutation rates, population sizes, population structure and demographic growth rates varied across simulations. All models in which anatomically modern (that is, Cro-Magnoid and current) Europeans belong to a distinct genealogy performed better than any model in which the three groups were assigned to the same mitochondrial genealogy. The maximum admissible level of gene flow between Neandertals and the ancestors of current Europeans is 0.001% per generation, one order of magnitude lower than estimated in previous studies not considering genetic data on Cro-Magnoid people.

  20. Molecular diversity and evolutionary processes of Alternaria solani in Brazil inferred using genealogical and coalescent approaches.

    Science.gov (United States)

    Lourenço, Valdir; Moya, Andrés; González-Candelas, Fernando; Carbone, Ignazio; Maffia, Luiz A; Mizubuti, Eduardo S G

    2009-06-01

    Alternaria spp. form a heterogeneous group of saprophytic and plant-pathogenic fungi widespread in temperate and tropical regions. However, the relationship between evolutionary processes and genetic diversity with epidemics is unknown for several plant-pathogenic Alternaria spp. The interaction of Alternaria solani populations with potato and tomato plants is an interesting case study for addressing questions related to molecular evolution of an asexual fungus. Gene genealogies based on the coalescent process were used to infer evolutionary processes that shape the A. solani population. Sequences of the rDNA internal transcribed spacer (ITS) region and the genes which encode the allergenic protein alt a 1 (Alt a 1) and glyceraldehyde-3-phosphate dehydrogenase (Gpd) were used to estimate haplotype and nucleotide diversity as well as for the coalescent analyses. The highest number of parsimony informative sites (n = 14), nucleotide diversity (0.007), and the average number of nucleotide differences (3.20) were obtained for Alt a 1. Although the highest number of haplotypes (n = 7) was generated for ITS, haplotype diversity was the lowest (0.148) for this region. Recombination was not detected. Subdivision was inferred from populations associated with hosts but there was no evidence of geographic subdivision, and gene flow is occurring among subpopulations. In the analysis of the Alt a 1, balancing selection and population expansion or purifying selection could have occurred in A. solani subpopulations associated with potato and tomato plants, respectively. There is strong evidence that the subpopulation of A. solani that causes early blight in potato is genetically distinct from the subpopulation that causes early blight in tomato. The population of A. solani is clonal, and gene flow and mutation are the main evolutionary processes shaping its genetic structure.

  1. Frequency modulation of stochastic gene expression bursts by strongly interacting small RNAs

    Science.gov (United States)

    Kumar, Niraj; Jia, Tao; Zarringhalam, Kourosh; Kulkarni, Rahul V.

    2016-10-01

    The sporadic nature of gene expression at the single-cell level—long periods of inactivity punctuated by bursts of mRNA or protein production—plays a critical role in diverse cellular processes. To elucidate the cellular role of bursting in gene expression, synthetic biology approaches have been used to design simple genetic circuits with bursty mRNA or protein production. Understanding how such genetic circuits can be designed with the ability to control burst-related parameters requires the development of quantitative stochastic models of gene expression. In this work, we analyze stochastic models for the regulation of gene expression bursts by strongly interacting small RNAs. For the parameter range considered, results based on mean-field approaches are significantly inaccurate and alternative analytical approaches are needed. Using simplifying approximations, we obtain analytical results for the corresponding steady-state distributions that are in agreement with results from stochastic simulations. These results indicate that regulation by small RNAs, in the strong interaction limit, can be used to effectively modulate the frequency of bursting. We explore the consequences of such regulation for simple genetic circuits involving feedback effects and switching between promoter states.

  2. Frequency modulation of stochastic gene expression bursts by strongly interacting small RNAs.

    Science.gov (United States)

    Kumar, Niraj; Jia, Tao; Zarringhalam, Kourosh; Kulkarni, Rahul V

    2016-10-01

    The sporadic nature of gene expression at the single-cell level-long periods of inactivity punctuated by bursts of mRNA or protein production-plays a critical role in diverse cellular processes. To elucidate the cellular role of bursting in gene expression, synthetic biology approaches have been used to design simple genetic circuits with bursty mRNA or protein production. Understanding how such genetic circuits can be designed with the ability to control burst-related parameters requires the development of quantitative stochastic models of gene expression. In this work, we analyze stochastic models for the regulation of gene expression bursts by strongly interacting small RNAs. For the parameter range considered, results based on mean-field approaches are significantly inaccurate and alternative analytical approaches are needed. Using simplifying approximations, we obtain analytical results for the corresponding steady-state distributions that are in agreement with results from stochastic simulations. These results indicate that regulation by small RNAs, in the strong interaction limit, can be used to effectively modulate the frequency of bursting. We explore the consequences of such regulation for simple genetic circuits involving feedback effects and switching between promoter states.

  3. Conditional Genealogies and the Age of a Neutral Mutant

    DEFF Research Database (Denmark)

    Wiuf, Carsten; Donelly, P

    1999-01-01

    This paper is concerned with the structure of the genealogy of a sample in which it is observed that some subset of chromosomes carries a particular mutation, assumed to have arisen uniquely in the history of the population. A rigorous theoretical study of this conditional genealogy is given using...

  4. 'Bodies Are Dangerous': Using Feminist Genealogy as Policy Studies Methodology.

    Science.gov (United States)

    Pillow, Wanda

    2003-01-01

    Explores implications of paying attention to the body, literally and figuratively, in policy analysis and policy theory. Building from recent critical, feminist, and post-structural work in policy studies, develops what is termed a feminist genealogy to aid in an analysis of policy studies. Provides example of feminist genealogical analysis…

  5. The Astronomy Genealogy Project: A Progress Report

    Science.gov (United States)

    Tenn, Joseph S.

    2016-01-01

    Although it is not yet visible, much progress has been made on the Astronomy Genealogy Project (AstroGen) since it was accepted as a project of the Historical Astronomy Division (HAD) three years ago. AstroGen will list the world's astronomers with information about their highest degrees and advisors. (In academic genealogy, your thesis advisor is your parent.) A small group (the AstroGen Team) has compiled a database of approximately 12,000 individuals who have earned doctorates with theses (dissertations) on topics in astronomy, astrophysics, cosmology, or planetary science. These include nearly all those submitted in Australia, Canada, the Netherlands, and New Zealand, and most of those in the United States (all through 2014 for most universities and all through 1990 for all). We are compiling more information than is maintained by the Mathematics Genealogy Project (MGP). In addition to name, degree, university, year of degree, and thesis advisor(s), all provided by MGP as well, we are including years of birth and death when available, mentors in addition to advisors, and links to the thesis when it is online and to the person's web page or obituary, when we can find it. We are still struggling with some questions, such as the boundaries of inclusion and whether or not to include subfields of astronomy. We believe that AstroGen will be a valuable resource for historians of science as well as a source of entertainment for those who like to look up their academic family trees. A dedicated researcher following links from AstroGen will be able to learn quite a lot about the careers of astronomy graduates of a particular university, country, or era. We are still seeking volunteers to enter the graduates of one or more universities.

  6. The Genealogical Tree of a Chromosome

    Science.gov (United States)

    Derrida, B.; Jung-Muller, B.

    1999-02-01

    We consider a simple neutral model to describe the genealogy of chromosomes by taking into account the effects of both recombination and coalescence. Seen as a statistical physics problem, the model looks like an inverse problem: A number of properties such as pair or three-point correlations can be computed easily, but the prediction of global properties, in particular the average number of ancestors, remains difficult. In the absence of exact solutions, these global properties can nevertheless be estimated by the usual approximations: series expansions, Monte Carlo simulations, mean-field theory. Simulations exhibit also non-self-averaging properties similar to those of mean-field spin glasses.

  7. Identification and refinement of two strong constitutive promoters for gene expression system of Schizosaccharomyces pombe.

    Science.gov (United States)

    Wang, Hongcheng; Wang, Haiyang; Wang, Meng; Zhang, Lei; Wang, Ren; Mei, Yanzhen; Shao, Weilan

    2014-06-01

    Fission yeast Schizosaccharomyces pombe shares various important properties with higher eukaryotes and is now considered a useful host for elevated production of mammalian proteins for medicinal applications. The full-length nmt1 promoter has been widely used as a strong promoter in S. pombe expression system. In the present study, the promoters of the eno101 and gpd3 genes in S. pombe were identified as strong constitutive promoters. For convenient applications in the plasmids of S. pombe, these promoters were refined to 276-bp eno and 273-bp gpd promoters by deleting undesired sequences and examining the expression of reporter genes including lacZ and xynA. Both the refined eno and gpd promoters provided approximately 1.5-fold higher expression of LacZ than nmt1 promoter. Furthermore, gene expression under the control of the eno or gpd promoter was not repressed by the components of YES medium while nmt1 promoter was inhibited by thiamine in yeast extract. Therefore, both eno and gpd promoters offer opportunities for efficient production of recombinant proteins by S. pombe in high cell-density fermentation.

  8. [Phylogeography of southern Asian Dolly Varden char Salvelinus malma krascheninnikovi: genealogical analysis of mitochondrial DNA].

    Science.gov (United States)

    Oleĭnik, A G; Skurikhina, L A; Chukova, E I

    2010-02-01

    Phylogeography of southern Asian Dolly Varden char was studied using the data on mtDNA variation (regions ND1/ND2, ND5/ND6, and Cytb/D loop) obtained using PCR-RFLP analysis. Analysis of contemporary population genetic structure showed that S. m. krascheninnikovi throughout the whole species range was characterized by high population differentiation in combination with rather small differences between the populations from remote regions. The genealogy of mtDNA haplotypes was reconstructed and nested clade analysis of geographical distances was performed. Geographical distribution of mtDNA haplotypes of S. m. krascheninnikovi was explained by population genetic processes (restricted gene flow), as well as by historical demographic events (range expansion and fragmentation). It was demonstrated that the main demographic events were associated with cyclic processes of the geological formation of the Sea of Japan and adjacent territories. Furthermore, genealogical tree of S. m. krascheninnikovi contained the traces of secondary contact between isolated phylogeographical lineages.

  9. Inference of gene regulatory networks with the strong-inhibition Boolean model

    Energy Technology Data Exchange (ETDEWEB)

    Xia Qinzhi; Liu Lulu; Ye Weiming; Hu Gang, E-mail: ganghu@bnu.edu.cn [Department of Physics, Beijing Normal University, Beijing 100875 (China)

    2011-08-15

    The inference of gene regulatory networks (GRNs) is an important topic in biology. In this paper, a logic-based algorithm that infers the strong-inhibition Boolean genetic regulatory networks (where regulation by any single repressor can definitely suppress the expression of the gene regulated) from time series is discussed. By properly ordering various computation steps, we derive for the first time explicit formulae for the probabilities at which different interactions can be inferred given a certain number of data. With the formulae, we can predict the precision of reconstructions of regulation networks when the data are insufficient. Numerical simulations coincide well with the analytical results. The method and results are expected to be applicable to a wide range of general dynamic networks, where logic algorithms play essential roles in the network dynamics and the probabilities of various logics can be estimated well.

  10. Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies.

    Directory of Open Access Journals (Sweden)

    Dennis Lal

    2015-05-01

    Full Text Available Genetic generalised epilepsy (GGE is the most common form of genetic epilepsy, accounting for 20% of all epilepsies. Genomic copy number variations (CNVs constitute important genetic risk factors of common GGE syndromes. In our present genome-wide burden analysis, large (≥ 400 kb and rare (< 1% autosomal microdeletions with high calling confidence (≥ 200 markers were assessed by the Affymetrix SNP 6.0 array in European case-control cohorts of 1,366 GGE patients and 5,234 ancestry-matched controls. We aimed to: 1 assess the microdeletion burden in common GGE syndromes, 2 estimate the relative contribution of recurrent microdeletions at genomic rearrangement hotspots and non-recurrent microdeletions, and 3 identify potential candidate genes for GGE. We found a significant excess of microdeletions in 7.3% of GGE patients compared to 4.0% in controls (P = 1.8 x 10-7; OR = 1.9. Recurrent microdeletions at seven known genomic hotspots accounted for 36.9% of all microdeletions identified in the GGE cohort and showed a 7.5-fold increased burden (P = 2.6 x 10-17 relative to controls. Microdeletions affecting either a gene previously implicated in neurodevelopmental disorders (P = 8.0 x 10-18, OR = 4.6 or an evolutionarily conserved brain-expressed gene related to autism spectrum disorder (P = 1.3 x 10-12, OR = 4.1 were significantly enriched in the GGE patients. Microdeletions found only in GGE patients harboured a high proportion of genes previously associated with epilepsy and neuropsychiatric disorders (NRXN1, RBFOX1, PCDH7, KCNA2, EPM2A, RORB, PLCB1. Our results demonstrate that the significantly increased burden of large and rare microdeletions in GGE patients is largely confined to recurrent hotspot microdeletions and microdeletions affecting neurodevelopmental genes, suggesting a strong impact of fundamental neurodevelopmental processes in the pathogenesis of common GGE syndromes.

  11. Burden Analysis of Rare Microdeletions Suggests a Strong Impact of Neurodevelopmental Genes in Genetic Generalised Epilepsies

    Science.gov (United States)

    Trucks, Holger; Schulz, Herbert; de Kovel, Carolien G.; Kasteleijn-Nolst Trenité, Dorothée; Sonsma, Anja C. M.; Koeleman, Bobby P.; Lindhout, Dick; Weber, Yvonne G.; Lerche, Holger; Kapser, Claudia; Schankin, Christoph J.; Kunz, Wolfram S.; Surges, Rainer; Elger, Christian E.; Gaus, Verena; Schmitz, Bettina; Helbig, Ingo; Muhle, Hiltrud; Stephani, Ulrich; Klein, Karl M.; Rosenow, Felix; Neubauer, Bernd A.; Reinthaler, Eva M.; Zimprich, Fritz; Feucht, Martha; Møller, Rikke S.; Hjalgrim, Helle; De Jonghe, Peter; Suls, Arvid; Lieb, Wolfgang; Franke, Andre; Strauch, Konstantin; Gieger, Christian; Schurmann, Claudia; Schminke, Ulf; Nürnberg, Peter; Sander, Thomas

    2015-01-01

    Genetic generalised epilepsy (GGE) is the most common form of genetic epilepsy, accounting for 20% of all epilepsies. Genomic copy number variations (CNVs) constitute important genetic risk factors of common GGE syndromes. In our present genome-wide burden analysis, large (≥ 400 kb) and rare (< 1%) autosomal microdeletions with high calling confidence (≥ 200 markers) were assessed by the Affymetrix SNP 6.0 array in European case-control cohorts of 1,366 GGE patients and 5,234 ancestry-matched controls. We aimed to: 1) assess the microdeletion burden in common GGE syndromes, 2) estimate the relative contribution of recurrent microdeletions at genomic rearrangement hotspots and non-recurrent microdeletions, and 3) identify potential candidate genes for GGE. We found a significant excess of microdeletions in 7.3% of GGE patients compared to 4.0% in controls (P = 1.8 x 10-7; OR = 1.9). Recurrent microdeletions at seven known genomic hotspots accounted for 36.9% of all microdeletions identified in the GGE cohort and showed a 7.5-fold increased burden (P = 2.6 x 10-17) relative to controls. Microdeletions affecting either a gene previously implicated in neurodevelopmental disorders (P = 8.0 x 10-18, OR = 4.6) or an evolutionarily conserved brain-expressed gene related to autism spectrum disorder (P = 1.3 x 10-12, OR = 4.1) were significantly enriched in the GGE patients. Microdeletions found only in GGE patients harboured a high proportion of genes previously associated with epilepsy and neuropsychiatric disorders (NRXN1, RBFOX1, PCDH7, KCNA2, EPM2A, RORB, PLCB1). Our results demonstrate that the significantly increased burden of large and rare microdeletions in GGE patients is largely confined to recurrent hotspot microdeletions and microdeletions affecting neurodevelopmental genes, suggesting a strong impact of fundamental neurodevelopmental processes in the pathogenesis of common GGE syndromes. PMID:25950944

  12. The genome of the stick insect Medauroidea extradentata is strongly methylated within genes and repetitive DNA.

    Directory of Open Access Journals (Sweden)

    Veiko Krauss

    Full Text Available BACKGROUND: Cytosine DNA methylation has been detected in many eukaryotic organisms and has been shown to play an important role in development and disease of vertebrates including humans. Molecularly, DNA methylation appears to be involved in the suppression of initiation or of elongation of transcription. Resulting organismal functions are suggested to be the regulation of gene silencing, the suppression of transposon activity and the suppression of initiation of transcription within genes. However, some data concerning the distribution of methylcytosine in insect species appear to contradict such roles. PRINCIPAL FINDINGS: By comparison of MspI and HpaII restriction patterns in genomic DNA of several insects we show that stick insects (Phasmatodea have highly methylated genomes. We isolated methylated DNA fragments from the Vietnamese Walking Stick Medauroidea extradentata (formerly known as Baculum extradentatum and demonstrated that most of the corresponding sequences are repetitive. Bisulfite sequencing of one of these fragments and of parts of conserved protein-coding genes revealed a methylcytosine content of 12.6%, mostly found at CpG, but also at CpT and CpA dinucleotides. Corresponding depletions of CpG and enrichments of TpG and CpA dinucleotides in some highly conserved protein-coding genes of Medauroidea reach a similar degree as in vertebrates and show that CpG methylation has occurred in the germline of these insects. CONCLUSIONS: Using four different methods, we demonstrate that the genome of Medauroidea extradentata is strongly methylated. Both repetitive DNA and coding genes appear to contain high levels of methylcytosines. These results argue for similar functions of DNA methylation in stick insects as those already known for vertebrates.

  13. Nucleotides upstream of the Kozak sequence strongly influence gene expression in the yeast S. cerevisiae.

    Science.gov (United States)

    Li, Jing; Liang, Qiang; Song, Wenjiang; Marchisio, Mario Andrea

    2017-01-01

    In the yeast Saccharomyces cerevisiae, as in every eukaryotic organism, the mRNA 5(')-untranslated region (UTR) is important for translation initiation. However, the patterns and mechanisms that determine the efficiency with which ribozomes bind mRNA, the elongation of ribosomes through the 5(')-UTR, and the formation of a stable translation initiation complex are not clear. Genes that are highly expressed in S. cerevisiae seem to prefer a 5(')-UTR rich in adenine and poor in guanine, particularly in the Kozak sequence, which occupies roughly the first six nucleotides upstream of the START codon. We measured the fluorescence produced by 58 synthetic versions of the S. cerevisiae minimal CYC1 promoter (pCYC1min), each containing a different 5(')-UTR. First, we replaced with adenine the last 15 nucleotides of the original pCYC1min 5(')-UTR-a theoretically optimal configuration for high gene expression. Next, we carried out single and multiple point mutations on it. Protein synthesis was highly affected by both single and multiple point mutations upstream of the Kozak sequence. RNAfold simulations revealed that significant changes in the mRNA secondary structures occur by mutating more than three adenines into guanines between positions -15 and -9. Furthermore, the effect of point mutations turned out to be strongly context-dependent, indicating that adenines placed just upstream of the START codon do not per se guarantee an increase in gene expression, as previously suggested. New synthetic eukaryotic promoters, which differ for their translation initiation rate, can be built by acting on the nucleotides upstream of the Kozak sequence. Translation efficiency could, potentially, be influenced by another portion of the 5(')-UTR further upstream of the START codon. A deeper understanding of the role of the 5(')-UTR in gene expression would improve criteria for choosing and using promoters inside yeast synthetic gene circuits.

  14. Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera

    Science.gov (United States)

    Mutanen, Marko; Kivelä, Sami M.; Vos, Rutger A.; Doorenweerd, Camiel; Ratnasingham, Sujeevan; Hausmann, Axel; Huemer, Peter; Dincă, Vlad; van Nieukerken, Erik J.; Lopez-Vaamonde, Carlos; Vila, Roger; Aarvik, Leif; Decaëns, Thibaud; Efetov, Konstantin A.; Hebert, Paul D. N.; Johnsen, Arild; Karsholt, Ole; Pentinsaari, Mikko; Rougerie, Rodolphe; Segerer, Andreas; Tarmann, Gerhard; Zahiri, Reza; Godfray, H. Charles J.

    2016-01-01

    The proliferation of DNA data is revolutionizing all fields of systematic research. DNA barcode sequences, now available for millions of specimens and several hundred thousand species, are increasingly used in algorithmic species delimitations. This is complicated by occasional incongruences between species and gene genealogies, as indicated by situations where conspecific individuals do not form a monophyletic cluster in a gene tree. In two previous reviews, non-monophyly has been reported as being common in mitochondrial DNA gene trees. We developed a novel web service “Monophylizer” to detect non-monophyly in phylogenetic trees and used it to ascertain the incidence of species non-monophyly in COI (a.k.a. cox1) barcode sequence data from 4977 species and 41,583 specimens of European Lepidoptera, the largest data set of DNA barcodes analyzed from this regard. Particular attention was paid to accurate species identification to ensure data integrity. We investigated the effects of tree-building method, sampling effort, and other methodological issues, all of which can influence estimates of non-monophyly. We found a 12% incidence of non-monophyly, a value significantly lower than that observed in previous studies. Neighbor joining (NJ) and maximum likelihood (ML) methods yielded almost equal numbers of non-monophyletic species, but 24.1% of these cases of non-monophyly were only found by one of these methods. Non-monophyletic species tend to show either low genetic distances to their nearest neighbors or exceptionally high levels of intraspecific variability. Cases of polyphyly in COI trees arising as a result of deep intraspecific divergence are negligible, as the detected cases reflected misidentifications or methodological errors. Taking into consideration variation in sampling effort, we estimate that the true incidence of non-monophyly is ∼23%, but with operational factors still being included. Within the operational factors, we separately assessed the

  15. Genealogy Record of Yehe Nala” newly completed

    Institute of Scientific and Technical Information of China (English)

    XueBaicheng

    2004-01-01

    Na shiyuan from Benxi of Liaoning Province finally completed compiling the “Genealogy Record of Yehe Nala” after spending years in studying a large number of ancient documentsand tracking the migration and the growth of the clan's ancestors about 500 years ago. The genealogy record is mostly based on “Genealogy Record of Na Clan” which was first written by Na Shoushan in 1943 and then re-compiled by his son. The newly edition records in detail the clan members' political, military and academic achievements,

  16. Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus

    Directory of Open Access Journals (Sweden)

    Fangquan Wang

    2016-05-01

    Full Text Available Rice black-streaked dwarf virus (RBSDV belongs to the genus Fijivirus in the family of Reoviridae and causes severe yield loss in rice-producing areas in Asia. RNA silencing, as a natural defence mechanism against plant viruses, has been successfully exploited for engineering virus resistance in plants, including rice. In this study, we generated transgenic rice lines harbouring a hairpin RNA (hpRNA construct targeting four RBSDV genes, S1, S2, S6 and S10, encoding the RNA-dependent RNA polymerase, the putative core protein, the RNA silencing suppressor and the outer capsid protein, respectively. Both field nursery and artificial inoculation assays of three generations of the transgenic lines showed that they had strong resistance to RBSDV infection. The RBSDV resistance in the segregating transgenic populations correlated perfectly with the presence of the hpRNA transgene. Furthermore, the hpRNA transgene was expressed in the highly resistant transgenic lines, giving rise to abundant levels of 21–24 nt small interfering RNA (siRNA. By small RNA deep sequencing, the RBSDV-resistant transgenic lines detected siRNAs from all four viral gene sequences in the hpRNA transgene, indicating that the whole chimeric fusion sequence can be efficiently processed by Dicer into siRNAs. Taken together, our results suggest that long hpRNA targeting multiple viral genes can be used to generate stable and durable virus resistance in rice, as well as other plant species.

  17. Let my people go (home to Spain: a genealogical model of Jewish identities since 1492.

    Directory of Open Access Journals (Sweden)

    Joshua S Weitz

    Full Text Available The Spanish government recently announced an official fast-track path to citizenship for any individual who is Jewish and whose ancestors were expelled from Spain during the inquisition-related dislocation of Spanish Jews in 1492. It would seem that this policy targets a small subset of the global Jewish population, that is, restricted to individuals who retain cultural practices associated with ancestral origins in Spain. However, the central contribution of this manuscript is to demonstrate how and why the policy is far more likely to apply to a very large fraction (i.e., the vast majority of Jews. This claim is supported using a series of genealogical models that include transmissible "identities" and preferential intra-group mating. Model analysis reveals that even when intra-group mating is strong and even if only a small subset of a present-day population retains cultural practices typically associated with that of an ancestral group, it is highly likely that nearly all members of that population have direct genealogical links to that ancestral group, given sufficient number of generations have elapsed. The basis for this conclusion is that not having a link to an ancestral group must be a property of all of an individual's ancestors, the probability of which declines (nearly superexponentially with each successive generation. These findings highlight unexpected incongruities induced by genealogical dynamics between present-day and ancestral identities.

  18. Let my people go (home) to Spain: a genealogical model of Jewish identities since 1492.

    Science.gov (United States)

    Weitz, Joshua S

    2014-01-01

    The Spanish government recently announced an official fast-track path to citizenship for any individual who is Jewish and whose ancestors were expelled from Spain during the inquisition-related dislocation of Spanish Jews in 1492. It would seem that this policy targets a small subset of the global Jewish population, that is, restricted to individuals who retain cultural practices associated with ancestral origins in Spain. However, the central contribution of this manuscript is to demonstrate how and why the policy is far more likely to apply to a very large fraction (i.e., the vast majority) of Jews. This claim is supported using a series of genealogical models that include transmissible "identities" and preferential intra-group mating. Model analysis reveals that even when intra-group mating is strong and even if only a small subset of a present-day population retains cultural practices typically associated with that of an ancestral group, it is highly likely that nearly all members of that population have direct genealogical links to that ancestral group, given sufficient number of generations have elapsed. The basis for this conclusion is that not having a link to an ancestral group must be a property of all of an individual's ancestors, the probability of which declines (nearly) superexponentially with each successive generation. These findings highlight unexpected incongruities induced by genealogical dynamics between present-day and ancestral identities.

  19. [On the philosophical genealogy of Freud].

    Science.gov (United States)

    Dimitrov, C T

    1975-06-01

    The origins of psycho-analysis, like those of every other medico-psychological study, have their own particular scientific and specific social, historical and philosophical-theoretical presuppositions. Freud's philosophical genealogy is closely linked to classical german philosophy and subsequent philosophical movements. I. Kant, J.-F. Herbart, A. Schopenhauer, F. Nietzsche, E. v. Hartmann, G. T. Fechner, E. Mach, W. Ostwald, L. Feuerbach and others did not only emphasise the significance of drives and the unconscious in human behaviour, they also described many psychological mechanisms from depth psychology, (for example repression, condensation, substitution, sublimation). Some false theoretical trends in psycho-analysis (biologism, psychologism and simplifying psycho-energetics to simplify) can be explained to some extent by the influences mentioned above.

  20. Multigenerational information: the example of the Icelandic Genealogy Database.

    Science.gov (United States)

    Tulinius, Hrafn

    2011-01-01

    The first part of the chapter describes the Icelandic Genealogical Database, how it was created, what it contains, and how it operates. In the second part, an overview of research accomplished with material from the database is given.

  1. PPARγ partial agonist GQ-16 strongly represses a subset of genes in 3T3-L1 adipocytes

    Energy Technology Data Exchange (ETDEWEB)

    Milton, Flora Aparecida [Faculdade de Ciências da Saúde, Laboratório de Farmacologia Molecular, Universidade de Brasília (Brazil); Genomic Medicine, Houston Methodist Research Institute, Houston, TX (United States); Cvoro, Aleksandra [Genomic Medicine, Houston Methodist Research Institute, Houston, TX (United States); Amato, Angelica A. [Faculdade de Ciências da Saúde, Laboratório de Farmacologia Molecular, Universidade de Brasília (Brazil); Sieglaff, Douglas H.; Filgueira, Carly S.; Arumanayagam, Anithachristy Sigamani [Genomic Medicine, Houston Methodist Research Institute, Houston, TX (United States); Caro Alves de Lima, Maria do; Rocha Pitta, Ivan [Laboratório de Planejamento e Síntese de Fármacos – LPSF, Universidade Federal de Pernambuco (Brazil); Assis Rocha Neves, Francisco de [Faculdade de Ciências da Saúde, Laboratório de Farmacologia Molecular, Universidade de Brasília (Brazil); Webb, Paul, E-mail: pwebb@HoustonMethodist.org [Genomic Medicine, Houston Methodist Research Institute, Houston, TX (United States)

    2015-08-28

    Thiazolidinediones (TZDs) are peroxisome proliferator-activated receptor gamma (PPARγ) agonists that improve insulin resistance but trigger side effects such as weight gain, edema, congestive heart failure and bone loss. GQ-16 is a PPARγ partial agonist that improves glucose tolerance and insulin sensitivity in mouse models of obesity and diabetes without inducing weight gain or edema. It is not clear whether GQ-16 acts as a partial agonist at all PPARγ target genes, or whether it displays gene-selective actions. To determine how GQ-16 influences PPARγ activity on a gene by gene basis, we compared effects of rosiglitazone (Rosi) and GQ-16 in mature 3T3-L1 adipocytes using microarray and qRT-PCR. Rosi changed expression of 1156 genes in 3T3-L1, but GQ-16 only changed 89 genes. GQ-16 generally showed weak effects upon Rosi induced genes, consistent with partial agonist actions, but a subset of modestly Rosi induced and strongly repressed genes displayed disproportionately strong GQ-16 responses. PPARγ partial agonists MLR24 and SR1664 also exhibit disproportionately strong effects on transcriptional repression. We conclude that GQ-16 displays a continuum of weak partial agonist effects but efficiently represses some negatively regulated PPARγ responsive genes. Strong repressive effects could contribute to physiologic actions of GQ-16. - Highlights: • GQ-16 is an insulin sensitizing PPARγ ligand with reduced harmful side effects. • GQ-16 displays a continuum of weak partial agonist activities at PPARγ-induced genes. • GQ-16 exerts strong repressive effects at a subset of genes. • These inhibitor actions should be evaluated in models of adipose tissue inflammation.

  2. Fully Bayesian tests of neutrality using genealogical summary statistics

    Directory of Open Access Journals (Sweden)

    Drummond Alexei J

    2008-10-01

    Full Text Available Abstract Background Many data summary statistics have been developed to detect departures from neutral expectations of evolutionary models. However questions about the neutrality of the evolution of genetic loci within natural populations remain difficult to assess. One critical cause of this difficulty is that most methods for testing neutrality make simplifying assumptions simultaneously about the mutational model and the population size model. Consequentially, rejecting the null hypothesis of neutrality under these methods could result from violations of either or both assumptions, making interpretation troublesome. Results Here we harness posterior predictive simulation to exploit summary statistics of both the data and model parameters to test the goodness-of-fit of standard models of evolution. We apply the method to test the selective neutrality of molecular evolution in non-recombining gene genealogies and we demonstrate the utility of our method on four real data sets, identifying significant departures of neutrality in human influenza A virus, even after controlling for variation in population size. Conclusion Importantly, by employing a full model-based Bayesian analysis, our method separates the effects of demography from the effects of selection. The method also allows multiple summary statistics to be used in concert, thus potentially increasing sensitivity. Furthermore, our method remains useful in situations where analytical expectations and variances of summary statistics are not available. This aspect has great potential for the analysis of temporally spaced data, an expanding area previously ignored for limited availability of theory and methods.

  3. GENEALOGI WALISONGO: Humanisasi Strategi Dakwah Sunan Kudus

    Directory of Open Access Journals (Sweden)

    Mas'udi *

    2015-11-01

    Full Text Available Sejarah panjang penyebaran Islam di tanah Jawa memiliki akar historis yang sampai detik ini belum tuntas untuk dimengerti otentisitas kemunculannya. Realitas ini bukanlah fakta tanpa alasan, namun minimnya catatan sejarah yang ada menjadikan semua fenomena kesejarahan yang telah berlangsung berabad-abad lamanya menjadi sedikit kabur untuk dipahami dan dimengerti embrio-embrio kesejarahannya. Hal ini pula yang tidak bisa diungkap secara orisinal pada realitas kesejarahan dari Dakwah Islamiyah Sunan Kudus di Kudus. Meskipun ditinjau secara arsitektural, data kesejarahan tentang Sunan Kudus dapat diobjektivikasikan, namun nilai-nilai dari muatan ajaran-ajarannya tidak bisa dimunculkan sebagai sebuah fakta original. Mengamati minimnya data kesejarahan yang bisa diobjektivikasikan dalam pengungkapan fakta-fakta sejarah di masa penyebaran Islam oleh Sunan Kudus, maka berbagai kritik terhadap data-data kesejarahan yang telah dikodifikasikan oleh para ahli mutlak diperlukan. Hal ini sejatinya ditujukan untuk memberikan perimbangan balancing yang cukup berarti demi menempatkan realitas sejarah yang ada terhindar dari spekulasi yang tidak bisa dipertanggungjawabkan. Berpijak kepada telusur data yang telah dilakukan, terungkap bahwa proses islamisasi yang terjadi di tengah-tengah kehidupan masyarakat Kudus tidak bisa dilepaskan dari humanisasi sistem ibadah yang diimplementasikan oleh Sunan Kudus. Humanisasi sistem ibadah dijadikan strategi realistis Sunan Kudus demi menyebarkan ajaran Islam di tengah-tengah kehidupan masyarakat Kudus. Alhasil, simpulan dari temuan ini dapat diungkap terciptanya humanisasi strategi ibadah yang dilakukan oleh Sunan Kudus dalam menciptakan kecenderungan keagamaan masyarakat terhadap ajaran Islam di Kudus. Kata Kunci: Genealogi, Sunan Kudus, Masjid Menara, Dakwah. WALISONGO GENEALOGY: DAWA HUMANIZATION STRATEGIES OF SUNAN KUDUS. The long history of the spread of Islam in Java has historical roots that until now it hadnt been

  4. Human hair genealogies and stem cell latency

    Directory of Open Access Journals (Sweden)

    Tavaré Simon

    2006-02-01

    Full Text Available Abstract Background Stem cells divide to reproduce themselves and produce differentiated progeny. A fundamental problem in human biology has been the inability to measure how often stem cells divide. Although it is impossible to observe every division directly, one method for counting divisions is to count replication errors; the greater the number of divisions, the greater the numbers of errors. Stem cells with more divisions should produce progeny with more replication errors. Methods To test this approach, epigenetic errors (methylation in CpG-rich molecular clocks were measured from human hairs. Hairs exhibit growth and replacement cycles and "new" hairs physically reappear even on "old" heads. Errors may accumulate in long-lived stem cells, or in their differentiated progeny that are eventually shed. Results Average hair errors increased until two years of age, and then were constant despite decades of replacement, consistent with new hairs arising from infrequently dividing bulge stem cells. Errors were significantly more frequent in longer hairs, consistent with long-lived but eventually shed mitotic follicle cells. Conclusion Constant average hair methylation regardless of age contrasts with the age-related methylation observed in human intestine, suggesting that error accumulation and therefore stem cell latency differs among tissues. Epigenetic molecular clocks imply similar mitotic ages for hairs on young and old human heads, consistent with a restart with each new hair, and with genealogies surreptitiously written within somatic cell genomes.

  5. Strong Constraint on Human Genes Escaping X-Inactivation Is Modulated by their Expression Level and Breadth in Both Sexes.

    Science.gov (United States)

    Slavney, Andrea; Arbiza, Leonardo; Clark, Andrew G; Keinan, Alon

    2016-02-01

    In eutherian mammals, X-linked gene expression is normalized between XX females and XY males through the process of X chromosome inactivation (XCI). XCI results in silencing of transcription from one ChrX homolog per female cell. However, approximately 25% of human ChrX genes escape XCI to some extent and exhibit biallelic expression in females. The evolutionary basis of this phenomenon is not entirely clear, but high sequence conservation of XCI escapers suggests that purifying selection may directly or indirectly drive XCI escape at these loci. One hypothesis is that this signal results from contributions to developmental and physiological sex differences, but presently there is limited evidence supporting this model in humans. Another potential driver of this signal is selection for high and/or broad gene expression in both sexes, which are strong predictors of reduced nucleotide substitution rates in mammalian genes. Here, we compared purifying selection and gene expression patterns of human XCI escapers with those of X-inactivated genes in both sexes. When we accounted for the functional status of each ChrX gene's Y-linked homolog (or "gametolog"), we observed that XCI escapers exhibit greater degrees of purifying selection in the human lineage than X-inactivated genes, as well as higher and broader gene expression than X-inactivated genes across tissues in both sexes. These results highlight a significant role for gene expression in both sexes in driving purifying selection on XCI escapers, and emphasize these genes' potential importance in human disease.

  6. Highly complex mitochondrial DNA genealogy in an endemic Japanese subterranean breeding brown frog Rana tagoi (Amphibia, Anura, Ranidae).

    Science.gov (United States)

    Eto, Koshiro; Matsui, Masafumi; Sugahara, Takahiro; Tanaka-Ueno, Tomoko

    2012-10-01

    The endemic Japanese frog Rana tagoi is unique among Holarctic brown frogs in that it breeds in small subterranean streams. Using mitochondrial 16S ribosomal RNA and NADH dehydrogenase subunit 1 genes, we investigated genealogical relationships among geographic samples of this species together with its relative R. sakuraii, which is also a unique stream breeder. These two species together form a monophyletic group, within which both are reciprocally paraphyletic. Rana tagoi is divided into two major clades (Clade A and B) that are composed of 14 genetic groups. Rana sakuraii is included in Clade A and split into two genetic groups, one of which forms a clade (Subclade A-2) with sympatric R. tagoi. This species-level paraphyly appears to be caused by incomplete taxonomy, in addition to introgressive hybridization and/or incomplete lineage sorting. Rana tagoi strongly differs from other Japanese anurans in its geographic pattern of genetic differentiation, most probably in relation to its unique reproductive habits. Taxonomically, R. tagoi surely includes many cryptic species.

  7. A Multigene Approach for Comparing Genealogy of Betacoronavirus from Cattle and Horses

    Directory of Open Access Journals (Sweden)

    Iracema N. Barros

    2013-01-01

    Full Text Available Gastroenteritis is one of the leading causes of morbidity and mortality among young and newborn animals and is often caused by multiple intestinal infections, with rotavirus and bovine coronavirus (BCoV being the main viral causes in cattle. Given that BCoV is better studied than equine coronaviruses and given the possibility of interspecies transmission of these viruses, this research was designed to compare the partial sequences of the spike glycoprotein (S, hemagglutinin-esterase protein (HE, and nucleoprotein (N genes from coronaviruses from adult cattle with winter dysentery, calves with neonatal diarrhea, and horses. To achieve this, eleven fecal samples from dairy cows with winter dysentery, three from calves, and two from horses, all from Brazil, were analysed. It could be concluded that the enteric BCoV genealogy from newborn and adult cattle is directly associated with geographic distribution patterns, when S and HE genes are taken into account. A less-resolved genealogy exists for the HE and N genes in cattle, with a trend for an age-related segregation pattern. The coronavirus strains from horses revealed Betacoronavirus sequences indistinguishable from those found in cattle, a fact previously unknown.

  8. Del sentido de la genealogía

    OpenAIRE

    ÓSCAR MARTIARENA

    2004-01-01

    A partir de diversos fragmentos de Ecce homo, Así habló Zaratustra, La gaya scienza y la propia Genealogía de la moral, Martiarena busca mostrar el sentido, la finalidad que, en la obra de Nietzsche, tiene hacer historia de la moral: crear libertad para nuevas valoraciones. A su vez, en el ensayo se sostiene que, en la filosofía contemporánea, la obra de Michel Foucault puede ser vista como genealogía de la moral y que el filósofo francés cultivó la noción y la práctica de la genealogía, cons...

  9. Disaster medicine: genealogy of a concept.

    Science.gov (United States)

    Stehrenberger, Cécile Stephanie; Goltermann, Svenja

    2014-11-01

    This paper evaluates disaster medicine from a historical perspective that facilitates the understanding of its present. Today, disaster medicine and humanitarian medicine are inextricably linked and the terms are sometimes used synonymously. An in-depth analysis of an extensive body of concrete empirical cases from various sources (i.e. archival records) reveals, however, that they have not always been the same. A genealogical, history-of-knowledge approach demonstrates that the concept of disaster medicine emerged in the early 20th century in Switzerland in the context of industrialization. Even though it gained important impetus during the First World War, the concept was informed by the experiences of forensic physicians in technological disasters such as mining explosions. The Cold War constituted the historical constellation in which disaster medicine was developed in West Germany during the 1960s and 1970s in a way that was paradigmatic for other Western European countries. At the same time, it was contested there in an unusual, historically unique way. Although focusing on a Western European context, this paper explores how medical interventions in disasters were international events and how the practice of disaster medicine was developed and "trained" through being applied in the Global South. It demonstrates the historicity of disaster medicine's political character and of the controversies generated by its involvement in civil and military operations. Throughout the 20th century, the political nature and military involvement of disaster medicine resulted in a number of ethical and practical issues, which are similar to the challenges facing humanitarian medicine today. The exploration of disaster medicine's past can therefore open up critical interventions in humanitarian medicine's present. Copyright © 2014 Elsevier Ltd. All rights reserved.

  10. Genealogia do biopoder Genealogy of biopower

    Directory of Open Access Journals (Sweden)

    Luiz Alberto Moreira Martins

    2009-08-01

    Full Text Available O objetivo do presente artigo, é rastrear os elementos, as questões e problematizações que possibilitaram à Michel Foucault, a elaboração dos conceitos de biopoder, biopolítica, governamentalidade e segurança. Pretendemos neste trabalho, investigar a genealogia do biopoder e da biopolítica, buscando retraçar nas reflexões de Foucault, em torno da medicalização da sociedade e da extensão do poder médico, no período 1974-1976, especialmente nas conferências da UERJ, todo um questionamento que preparava a emergência das noções de biopoder e biopolítica, tal como foram propostas por ele em 1976. Podemos supor que a articulação feita por Foucault, entre a medicalização da sociedade e o governo da vida foi uma das condições que tornaram possível a emergência da hipótese do biopoder.The objective of the present paper is to trace the elements, the questions and problematizations that rendered possible to Foucault the elaboration of the concepts of biopower, biopolitics, governmentality and security. In this work we intend to investigate the genealogy of biopower and biopolitics, seeking to retrace in Foucault's reflections around the medicalization of society and the extension of medical power - in the period 1974-1976, especially in the lectures at UERJ - the questioning that prepared the emergence of the notions of biopower and biopolitics, as proposed by him in 1976. We can suppose that the articulation made by Foucault between the medicalization of society and the government of life was one of the conditions that rendered possible the emergence of the hypothesis of biopower.

  11. The Expression of Manganese Superoxide Dismutase Gene from Nelumbo nucifera Responds Strongly to Chilling and Oxidative Stresses

    Institute of Scientific and Technical Information of China (English)

    Wen Li; Lin Qi; Xiaodong Lin; Huhui Chen; Zhanqi Ma; Keqiang Wu; Shangzhi Huang

    2009-01-01

    A manganese superoxide dismutase (Mn-SOD) gene, NnMSD1, was identified from embryonic axes of the sacred lotus (Nelumbo nucifera Gaertn.). The NnMSD1 protein contains all conserved residues of the Mn-SOD protein family, including four consensus metal binding domains and a signal peptide for mitochondrial targeting. Southern blot analysis suggests the existence of two Mn-SOD genes in sacred lotus. NnMSD1 was highly expressed in developing embryonic axes during seed development, but appeared in cotyledons only at the early stage of development and became undetectable in the cotyledons during late embryogenesis. The expression of the NnMSD1 gene in germinating embryonic axes, in response to various stresses such as heat shock, chilling, and exposure to stress-related chemicals, was also studied. Heat shock strongly inhibited the expression of the NnMSD1 gene, whereas the NnMSD1 transcript level increased strongly in chilling stress treatment. An increase in expression was also highly induced by H2O2 in germinating embryonic axes. The results suggest that the expression pattern of the NnMSD1 gene differed between developing axes and cotyledons, and that the NnMSD1 gene expression responds strongly to chilling and oxidative stress.

  12. Candidate genes detected in transcriptome studies are strongly dependent on genetic background.

    Directory of Open Access Journals (Sweden)

    Pernille Sarup

    Full Text Available Whole genome transcriptomic studies can point to potential candidate genes for organismal traits. However, the importance of potential candidates is rarely followed up through functional studies and/or by comparing results across independent studies. We have analysed the overlap of candidate genes identified from studies of gene expression in Drosophila melanogaster using similar technical platforms. We found little overlap across studies between putative candidate genes for the same traits in the same sex. Instead there was a high degree of overlap between different traits and sexes within the same genetic backgrounds. Putative candidates found using transcriptomics therefore appear very sensitive to genetic background and this can mask or override effects of treatments. The functional importance of putative candidate genes emerging from transcriptome studies needs to be validated through additional experiments and in future studies we suggest a focus on the genes, networks and pathways affecting traits in a consistent manner across backgrounds.

  13. Worldwide genealogy of Entamoeba histolytica: an overview to understand haplotype distribution and infection outcome.

    Science.gov (United States)

    Zermeño, Valeria; Ximénez, Cecilia; Morán, Patricia; Valadez, Alicia; Valenzuela, Olivia; Rascón, Edgar; Diaz, Daniel; Cerritos, René

    2013-07-01

    Although Entamoeba histolytica is one of the most prevalent intestinal parasites, how the different strains of this species are distributed all over the world and how different genotypes are associated with the infection outcome are yet to be fully understood. Recently, the use of a number of molecular markers has made the characterization of several genotypes in those regions with high incidence of amoebiasis possible. This work proposes the first genealogy of E. histolytica, with an haplotype network based on two tRNA gene-linked array of Short Tandem Repeats (STRs) reported until today, and 47 sequences from 39 new isolates of Mexican Amoebic Liver Abscesses (ALA) samples. One hundred and three sequences were obtained from D-A locus, their information about the geographic region of isolation as well as clinical diagnosis were also collected. One hundred and five sequences from N-K2 locus were also obtained as well as the region of isolation, but the information about clinical diagnosis was not available in all cases. The most abundant and widely distributed haplotype in the world is the one of E. histolytica HM1:IMSS strain. This was found in Mexico, Bangladesh, Japan, China and USA and is associated to symptomatic patients as well as asymptomatic cyst passers. Many other haplotypes were found only in a single country. Both genealogies suggest that there are no lineages within the networks that may be related to a particular geographic region or infection outcome. A concatenated analysis of the two molecular markers revealed 12 different combinations, which suggests the possibility of genetic recombination events. The present study is the first to propose a global genealogy of this species and suggests that there are still many genotypes to be discovered. The genotyping of new isolates will help to understand the great diversity and genetic structure of this parasite.

  14. GENDER GENEALOGY OF READING AS CULTURAL PRACTICE

    Directory of Open Access Journals (Sweden)

    N. Yu. Kryvda

    2017-06-01

    Full Text Available Purpose. The article is devoted to the cultural aspect of texts using in European culture. The paper found out methodological basis of correctly interpreting the term "practice" in the philosophical and sociological discourses. In the first case the concept reveals human nature; appealing to the field of ethics and intersubjective interactions. In sociological approach the term practice is contrasted to institutional life. It seems to be an organic; vital relevance of actions for contrast to the mechanically regulated community life. Methodology. The paper considered the typology of human intellectual conditions according to Kant’s divided into pure and practical reason. The last one directs action-willed individual efforts so as to meet the universal relevance and ethical coherence. Gottlieb Fichte interpreted practice reason as the way to combine intellectual intentions and material conditions of human being. G. W. F. Hegel enriched the concept with terms of "objectification" and "alienation” of labour. Karl Marx formulated the main features of activity approach to the human nature exploring. In sociological discourse the term practice is opposed to mechanically done actions (according to institutional normativity. Given the philosophical and sociological methodological contexts the reading is studied as activity that aimed emotional and volitional contact with sense. Originality. The paper analysed the genealogy of reading practices. There were selected two types of text perception – rapid "masculine" and prudent "women's" reading. Women salon environment of the XVIII-th century capitalistic Europe was the main condition for the forming of literary-aware public. The authors analysed the process of reading of the text-as-satisfaction and text-as-pleasure (R. Barthes. The work presents the overview of classical studies of sociocultural field: Thorstein Veblen; Vladimir Toporov; Rolan Barthes and contemporary researchers such as T. Markova

  15. [Genealogical Analysis of the Use of Aegilops (Aegilops L.) Genetic Material in Wheat (Triticum Aestivum L.)].

    Science.gov (United States)

    Martynov, S P; Dobrotvorskaya, T V; Mitrofanova, O P

    2015-09-01

    A genealogical analysis of accessions in the global gene pool of the wheat database GRIS4.0 showed that the use of the genetic material of Aegilops in wheat breeding began about half a century ago. During this time, more than 1350 varieties and 9000 lines, the pedigree of which contains Aegilops species, were created in different regions of the world. The spatial and temporal dynamics of the distribution of wheat varieties containing the genetic material of Aegilops was investigated. Analysis of the data showed that most commercial varieties with a pedigree including Ae. tauschii and/or Ae. umbellulata were created and grown in North America. More than 70% of the varieties were produced with Ae. ventricosa, which is common in western and central Europe. A gradual increase in the proportion of varieties with Aegilops genetic material was recorded from 1962 to 2011. The percentage of varieties created with the involvement of Ae. umbellulata increased from 1-5% in the 1960s to 25-29% in the 2000s. Those created with Ae. tauschii increased from 0% to 14-18%, and those created with Ae. ventricosa increased from 1% to 34-37%. The increases in the number of these varieties indicates that the resistance genes from Aegilops species retain their effectiveness. Genealogical analysis of the varieties in which resistance genes from Aegilops were postulated revealed that varieties or lines that were sources of identified genes were often absent in the pedigree. This may be due to an incorrect pedigree record or errors in the identification of resistance genes by phytopathological testing and/or the use of molecular markers, or confusion in nurseries. Preliminary analysis of pedigrees provides an opportunity to reveal discrepancies between the pedigree and postulated genes.

  16. Academic Genealogy and Direct Calorimetry: A Personal Account

    Science.gov (United States)

    Jackson, Donald C.

    2011-01-01

    Each of us as a scientist has an academic legacy that consists of our mentors and their mentors continuing back for many generations. Here, I describe two genealogies of my own: one through my PhD advisor, H. T. (Ted) Hammel, and the other through my postdoctoral mentor, Knut Schmidt-Nielsen. Each of these pathways includes distingished scientists…

  17. Preserving local writers, genealogy, photographs, newspapers, and related materials

    CERN Document Server

    Smallwood, Carol

    2012-01-01

    Preserving Local Writers, Genealogy, Photographs, Newspapers, and Related Materials draws on the practical knowledge of archivists, preservationists, librarians, and others who share the goal of making local history accessible to future generations. Anyone who plans to start a local history project or preserve important historical materials will find plenty of tips, techniques, sample documents, project ideas, and inspiration in its pages.

  18. Academic Genealogy and Direct Calorimetry: A Personal Account

    Science.gov (United States)

    Jackson, Donald C.

    2011-01-01

    Each of us as a scientist has an academic legacy that consists of our mentors and their mentors continuing back for many generations. Here, I describe two genealogies of my own: one through my PhD advisor, H. T. (Ted) Hammel, and the other through my postdoctoral mentor, Knut Schmidt-Nielsen. Each of these pathways includes distingished scientists…

  19. The total Somali clan genealogy : a preliminary sketch

    NARCIS (Netherlands)

    Abbink, J.

    1999-01-01

    This paper presents a preliminary genealogy of all Somali 'clans'. Somali kinship is based on patrilineal descent, but there are no equivalents in the Somali language for the words 'clan' and 'lineage'. The Somali terminology for the levels of social segmentation is complex, amongst others because o

  20. Answers to the Gaze: A Genealogical Poaching of Resistances.

    Science.gov (United States)

    Wendt, Ronald F.

    1996-01-01

    States that how discourse plays a central role in social relations/power dynamics is better understood because of M. Foucault's insights on power--central to Foucault's theory concerning the power-knowledge-discourse dialectic is that for every force there is resistance. Offers a new genealogy, which better suggests how resistance might appear in…

  1. Arranging Roots: Classification and Subject Headings for Genealogical Collections.

    Science.gov (United States)

    Blake, Linda; Stallings, Evelyn T.

    1997-01-01

    The Dewey Decimal Classification was not fulfilling genealogical researchers' needs, who search for ancestors by place (not subject). A new system that was developed at Rowan Public Library (Salisbury, North Carolina) is described. Also given are suggested additions to the Library of Congress Subject Headings to provide geographic orientation.…

  2. Self-Similarity in Population Dynamics: Surname Distributions and Genealogical Trees

    Directory of Open Access Journals (Sweden)

    Paolo Rossi

    2015-01-01

    Full Text Available The frequency distribution of surnames turns out to be a relevant issue not only in historical demography but also in population biology, and especially in genetics, since surnames tend to behave like neutral genes and propagate like Y chromosomes. The stochastic dynamics leading to the observed scale-invariant distributions has been studied as a Yule process, as a branching phenomenon and also by field-theoretical renormalization group techniques. In the absence of mutations the theoretical models are in good agreement with empirical evidence, but when mutations are present a discrepancy between the theoretical and the experimental exponents is observed. Hints for the possible origin of the mismatch are discussed, with some emphasis on the difference between the asymptotic frequency distribution of a full population and the frequency distributions observed in its samples. A precise connection is established between surname distributions and the statistical properties of genealogical trees. Ancestors tables, being obviously self-similar, may be investigated theoretically by renormalization group techniques, but they can also be studied empirically by exploiting the large online genealogical databases concerning European nobility.

  3. Structure analysis of the La Guajira-Colombia population: a genetic, demographic and genealogical overview.

    Science.gov (United States)

    Rojas, M Y; Alonso, L A; Sarmiento, V A; Eljach, L Y; Usaquén, W

    2013-03-01

    This study examined whether cultural factors, as compared to geographical distance, have produced a population sub-structure among different groups from the La Guajira population (Amerindian Wayúu and other resident groups) that co-exist within the same region. The aims of this study were to analyse this population to discover whether cultural barriers result in the sub-structure, to evaluate whether there is a genetic drift effect and to describe migration dynamics using a genetic, genealogical and demographic approach. This study examined a sample of 290 individuals who were grouped based on a genealogical criterion to distinguish between native individuals and migrants. Using demographic information, the age and gender structure of the population and genetic drift estimators were analysed. Using 15 autosomal microsatellites, heterozygosity, Hardy-Weinberg equilibrium (HWE), inbreeding, sub-structure, recent migration rate and genetic relationships were also evaluated using a Principal Component analysis (PCA) using reference populations. La Guajira is a young population that is growing and exposed to a moderate effect of genetic drift (Neme 11.903). The Wayúu are highly diverse (Ho 0.727) and different from other groups, with the exception of Wayúu-Guajiro. This trend was also observed in other Amerindian populations. This study found a high level of admixture and gene flow within the Wayúu population despite cultural differences. Thus, although the Wayúu population differs from other population groups, it is not an isolated population.

  4. Strong combined gene-environment effects in anti-cyclic citrullinated peptide-positive rheumatoid arthritis

    DEFF Research Database (Denmark)

    Pedersen, Line Merete Blak; Jacobsen, Søren; Garred, Peter;

    2007-01-01

    To study the role of shared epitope (SE) susceptibility genes, alone and in combination with tobacco smoking and other environmental risk factors, for risk of subtypes of rheumatoid arthritis (RA) defined by the presence or absence of serum antibodies against cyclic citrullinated peptides (CCPs)....

  5. The MY09B gene is a strong risk factor for developing refractory Celiac disease

    NARCIS (Netherlands)

    Wolters, Victorien M.; Verbeek, Wieke H. M.; Zhernakova, Alexandra; Onland-Moret, Charlotte; Schreurs, Marco W. J.; Monsuur, Alienke J.; Verduijn, Willem; Wijmenga, Cisca; Mulder, Chris J. J.

    2007-01-01

    Background & Aims: Celiac disease (CD) is associated with HLA-DQ2 and HLA-DQ8 and has been linked to genetic variants in the MY09B gene on chromosome 19. HLA-DQ2 homozygosity is associated with complications of CD such as refractory celiac disease type II (RCD II) and enteropathy-associated T-cell

  6. Detection of the Helicobacter pylori dupA gene is strongly affected by the PCR design

    NARCIS (Netherlands)

    Abadi, Amin Talebi Bezmin; Loffeld, Ruud J L F; Constancia, Ashandra C; Wagenaar, Jaap A; Kusters, Johannes G

    2014-01-01

    The Helicobacter pylori virulence gene dupA is usually detected by PCR, but the primer binding sites used are highly variable. Our newly designed qPCR against a conserved region of dupA was positive in 64.2% of 394 clinical isolates while the positivity rate of the commonly used PCRs ranged from 29.

  7. Novel strong tissue specific promoter for gene expression in human germ cells

    Directory of Open Access Journals (Sweden)

    Kuzmin Denis

    2010-08-01

    Full Text Available Abstract Background Tissue specific promoters may be utilized for a variety of applications, including programmed gene expression in cell types, tissues and organs of interest, for developing different cell culture models or for use in gene therapy. We report a novel, tissue-specific promoter that was identified and engineered from the native upstream regulatory region of the human gene NDUFV1 containing an endogenous retroviral sequence. Results Among seven established human cell lines and five primary cultures, this modified NDUFV1 upstream sequence (mNUS was active only in human undifferentiated germ-derived cells (lines Tera-1 and EP2102, where it demonstrated high promoter activity (~twice greater than that of the SV40 early promoter, and comparable to the routinely used cytomegaloviral promoter. To investigate the potential applicability of the mNUS promoter for biotechnological needs, a construct carrying a recombinant cytosine deaminase (RCD suicide gene under the control of mNUS was tested in cell lines of different tissue origin. High cytotoxic effect of RCD with a cell-death rate ~60% was observed only in germ-derived cells (Tera-1, whereas no effect was seen in a somatic, kidney-derived control cell line (HEK293. In further experiments, we tested mNUS-driven expression of a hyperactive Sleeping Beauty transposase (SB100X. The mNUS-SB100X construct mediated stable transgene insertions exclusively in germ-derived cells, thereby providing further evidence of tissue-specificity of the mNUS promoter. Conclusions We conclude that mNUS may be used as an efficient promoter for tissue-specific gene expression in human germ-derived cells in many applications. Our data also suggest that the 91 bp-long sequence located exactly upstream NDUFV1 transcriptional start site plays a crucial role in the activity of this gene promoter in vitro in the majority of tested cell types (10/12, and an important role - in the rest two cell lines.

  8. Early Growth Response Genes Signaling Supports Strong Paracrine Capability of Mesenchymal Stem Cells

    Directory of Open Access Journals (Sweden)

    Kenichi Tamama

    2012-01-01

    Full Text Available MSCs provide a promising method for cell therapy through their wound healing and tissue regenerative properties. Originally, MSCs' role in wound healing was thought to be tied to their multipotency, but it is now accepted that MSCs mediate the healing process through their strong paracrine capability. EGF was shown to facilitate in vitro expansion of MSCs without altering multipotency. Our previous data suggest that the molecular machinery underlying MSCs' strong paracrine capability lies downstream of EGFR signaling, and we focus on transcription factors EGR1 and EGR2. Evidence suggests that EGR1 regulates angiogenic and fibrogenic factor production in MSCs, and an EGFR-EGR1-EGFR ligands autocrine loop is one of the underlying mechanisms supporting their strong paracrine machinery through EGR1. EGR2 appears to regulate the expression of immunomodulatory molecules. Chronic nonhealing wounds are ischemic, inflammatory, and often fibrotic, and the hypoxic micro-environment of these wounds may compromise MSCs' wound healing properties in vivo by upregulating the EGR1's fibrogenic effects and downregulating the EGR2's immuno-modulatory effects. Thus, these transcription factors can be potential targets in the optimization of cell-based therapies. Further study in vitro is required to understand MSCs' paracrine machinery and to optimize it as a tool for effective cell-based therapies.

  9. The Cortistatin Gene PSS2 Rather Than the Somatostatin Gene PSS1 Is Strongly Expressed in Developing Avian Autonomic Neurons

    OpenAIRE

    Nishi, Rae; Stubbusch, Jutta; Hulce, Jonathan J.; Hruska, Martin; Pappas, Anthony; Bravo, Maria-Christina; Huber, Leslie P.; Bakondi, Benjamin; Soltys, John; Rohrer, Hermann

    2010-01-01

    Somatostatin and cortistatin are neuromodulators with divergent expression patterns and biological roles. Whereas expression and function of genes encoding somatostatin (PSS1) and the related peptide cortistatin (PSS2) have been studied in detail for the central nervous system (CNS) and immune system, relatively little is known about their expression patterns in the peripheral nervous system (PNS). We compare the expression patterns of PSS1 and PSS2 in chicken embryos. At E14, PSS1 is higher ...

  10. 植物三种不同遗传方式基因的地理家系谱理论与应用初探%A Preliminary Approach to the Theory of Geographical Gene Genealogy for Plant Genomes with Three Different Modes of Inheritance and Its Application

    Institute of Scientific and Technical Information of China (English)

    胡新生

    2000-01-01

    将已知用于从地理空间上离散或连续分布群体随机抽取基因样本的基因家系谱理论推广到两性异交植物上.由于存在不同的群体间基因迁移率,对3种不同遗传方式的植物基因组(核、叶绿体和线粒体DNA)分别进行了研究.理论上证明对于不同遗传方式的基因,通过相应适当调整有效群体大小和迁移率,现有的基因家系谱理论可直接应用于植物群体上.其中一个结论就是当从离散分布群体中随机抽取n个基因样本时,亚群体间的花粉流和种子流的相对比率可以用亚群体间和亚群体内的DNA碱基序列总差异数量估计值来估算.另一具有理论意义的结论是在离散分布的群体结构模型中,父本遗传的单倍体基因(针叶树的叶绿体DNA上的基因)的平均同祖并合发生时间最短,而在一定条件下,母本遗传的单倍体基因(被子植物的叶绿体DNA和被子或裸子植物的线粒体DNA上的基因)的平均同祖并合发生时间最长,然而这两个结论在连续分布的群体遗传结构模型却难以获得.%This paper extends to hermaphrodite outcrossing plant populations the existing gene genealogy theories for a sample of genes randomly chosen from geographically discrete or continuously distributed populations. Three plant genomes (nuclear, chloroplast and mitochondrial DNA) with different modes of inheritance are considered separately due to the difference in migration rates. It is shown that on certain assumptions, the previous coalescence theories can be applied to plant by appropriate reparametrization of the effective population size and migration rate specific to each genome. One result is that estimation of the ratio of pollen to seed flow from a sample of n (n≥2) individual genes can be obtained in terms of the number of segregating sites between and within populations that are discretely distributed in space. Another result of theoretical interest is that in the

  11. Polyphyly and gene flow between non-sibling Heliconius species

    Directory of Open Access Journals (Sweden)

    Jiggins Chris D

    2006-04-01

    Full Text Available Abstract Background The view that gene flow between related animal species is rare and evolutionarily unimportant largely antedates sensitive molecular techniques. Here we use DNA sequencing to investigate a pair of morphologically and ecologically divergent, non-sibling butterfly species, Heliconius cydno and H. melpomene (Lepidoptera: Nymphalidae, whose distributions overlap in Central and Northwestern South America. Results In these taxa, we sequenced 30–45 haplotypes per locus of a mitochondrial region containing the genes for cytochrome oxidase subunits I and II (CoI/CoII, and intron-spanning fragments of three unlinked nuclear loci: triose-phosphate isomerase (Tpi, mannose-6-phosphate isomerase (Mpi and cubitus interruptus (Ci genes. A fifth gene, dopa decarboxylase (Ddc produced sequence data likely to be from different duplicate loci in some of the taxa, and so was excluded. Mitochondrial and Tpi genealogies are consistent with reciprocal monophyly, whereas sympatric populations of the species in Panama share identical or similar Mpi and Ci haplotypes, giving rise to genealogical polyphyly at the species level despite evidence for rapid sequence divergence at these genes between geographic races of H. melpomene. Conclusion Recent transfer of Mpi haplotypes between species is strongly supported, but there is no evidence for introgression at the other three loci. Our results demonstrate that the boundaries between animal species can remain selectively porous to gene flow long after speciation, and that introgression, even between non-sibling species, can be an important factor in animal evolution. Interspecific gene flow is demonstrated here for the first time in Heliconius and may provide a route for the transfer of switch-gene adaptations for Müllerian mimicry. The results also forcefully demonstrate how reliance on a single locus may give an erroneous picture of the overall genealogical history of speciation and gene flow.

  12. Succinate dehydrogenase gene mutations are strongly associated with paraganglioma of the organ of Zuckerkandl.

    Science.gov (United States)

    Lodish, Maya B; Adams, Karen T; Huynh, Thanh T; Prodanov, Tamara; Ling, Alex; Chen, Clara; Shusterman, Suzanne; Jimenez, Camilo; Merino, Maria; Hughes, Marybeth; Cradic, Kendall W; Milosevic, Dragana; Singh, Ravinder J; Stratakis, Constantine A; Pacak, Karel

    2010-09-01

    Organ of Zuckerkandl paragangliomas (PGLs) are rare neuroendocrine tumors that are derived from chromaffin cells located around the origin of the inferior mesenteric artery extending to the level of the aortic bifurcation. Mutations in the genes encoding succinate dehydrogenase subunits (SDH) B, C, and D (SDHx) have been associated with PGLs, but their contribution to PGLs of the organ of Zuckerkandl PGLs is not known. We aimed to describe the clinical presentation of patients with PGLs of the organ of Zuckerkandl and investigate the prevalence of SDHx mutations and other genetic defects among them. The clinical characteristics of 14 patients with PGL of the organ of Zuckerkandl were analyzed retrospectively; their DNA was tested for SDHx mutations and deletions. Eleven out of 14 (79%) patients with PGLs of the organ of Zuckerkandl were found to have mutations in the SDHB (9) or SDHD (2) genes; one patient was found to have the Carney-Stratakis syndrome (CSS), and his PGL was discovered during surgery for gastrointestinal stromal tumor. Our results show that SDHx mutations are prevalent in pediatric and adult PGLs of the organ of Zuckerkandl. Patients with PGLs of the organ of Zuckerkandl should be screened for SDHx mutations and the CSS; in addition, asymptomatic carriers of an SDHx mutation among the relatives of affected patients may benefit from tumor screening for early PGL detection.

  13. Freud's "bad conscience": The case of Nietzsche's Genealogy.

    Science.gov (United States)

    Greer, Scott

    2002-01-01

    This article develops the argument that Friedrich Nietzsche influenced several aspects of Freud's later writings by illustrating, in particular, the impact of Nietzsche's On the Genealogy of Morals on Freud's Civilization and its Discontents. The theoretical and conceptual schemes represented in Freud's Discontents are found to bear a remarkable similarity to Nietzsche's Genealogy on a number of highly specific points. It is suggested that "DAS ES," "Uber-ich," and "bad conscience," concepts central to Freud's moral theory of mind, are at least partly derived from Nietzsche. Moreover, Freud's phylogenetic theory of guilt is based upon premises found in Nietzsche, as are specific details relating to ideas on human prehistory and the ancestral family. Based on this evidence, a re-examination of the moral and social dimensions of Freud's "structural" model may be in order. Copyright 2002 Wiley Periodicals, Inc.

  14. Lesbian Studies after The Lesbian Postmodern: toward a new genealogy.

    Science.gov (United States)

    Doan, Laura

    2007-01-01

    While Lesbian Studies is established as a commodity in the academic marketplace, its disciplinary contours are rather more obscure-and even more problematically, its disciplinary genealogy remains somewhat crude. The dominant genealogy of Lesbian Studies might best be characterized as a 'collision model,' a battle between politics and theory, even though much existing scholarship draws on both Lesbian-Feminist Theory and Queer Theory.1 This article proposes that the tools and methods of a sub-field called 'Lesbian Cultural History' might be useful in generating other historical accounts of the origins and evolution of Lesbian Studies. Such a project is vital because the writing of our disciplinary History clarifies how we envision a disciplinary future.

  15. Genealogies of regular exchangeable coalescents with applications to sampling

    CERN Document Server

    Limic, Vlada

    2010-01-01

    This article considers a model of genealogy corresponding to a regular exchangeable coalescent (also known as Xi-coalescent) started from a large finite configuration, and undergoing neutral mutations. Asymptotic expressions for the number of active lineages were obtained by the author in a previous work. Analogous results for the number of active mutation-free lineages and the combined lineage lengths are derived using the same martingale-based technique. They are given in terms of convergence in probability, while extensions to convergence in moments and convergence almost surely are discussed. The above mentioned results have direct consequences on the sampling theory in the Xi-coalescent setting. In particular, the regular Xi-coalescents that come down from infinity (i.e., with locally finite genealogies), have an asymptotically equal number of families under the corresponding infinite alleles and infinite sites models. In special cases, quantitative asymptotic formulae for the number of families that con...

  16. On the genealogy of a population of biparental individuals.

    Science.gov (United States)

    Derrida, B; Manrubia, S C; Zanette, D H

    2000-04-07

    If one goes backward in time, the number of ancestors of an individual doubles at each generation. This exponential growth very quickly exceeds the population size, when this size is finite. As a consequence, the ancestors of a given individual cannot be all different and most remote ancestors are repeated many times in any genealogical tree. The statistical properties of these repetitions in genealogical trees of individuals for a panmictic closed population of constant size N can be calculated. We show that the distribution of the repetitions of ancestors reaches a stationary shape after a small number G(c) approximately log N of generations in the past, that only about 80% of the ancestral population belongs to the tree (due to coalescence of branches), and that two trees for individuals in the same population become identical after G(c)generations have elapsed. Our analysis is easy to extend to the case of exponentially growing population. Copyright 2000 Academic Press.

  17. How genealogies are affected by the speed of evolution

    Science.gov (United States)

    Brunet, Éric; Derrida, Bernard

    2012-01-01

    In a series of recent works it has been shown that a class of simple models of evolving populations under selection leads to genealogical trees whose statistics are given by the Bolthausen-Sznitman coalescent rather than by the well-known Kingman coalescent in the case of neutral evolution. Here we show that when conditioning the genealogies on the speed of evolution, one finds a one-parameter family of tree statistics which interpolates between the Bolthausen-Sznitman and Kingman coalescents. This interpolation can be calculated explicitly for one specific version of the model, the exponential model. Numerical simulations of another version of the model and a phenomenological theory indicate that this one-parameter family of tree statistics could be universal. We compare this tree structure with those appearing in other contexts, in particular in the mean field theory of spin glasses.

  18. Distribution of repetitions of ancestors in genealogical trees

    Science.gov (United States)

    Derrida, Bernard; Manrubia, Susanna C.; Zanette, Damián H.

    2000-06-01

    We calculate the probability distribution of repetitions of ancestors in a genealogical tree for simple neutral models of a closed population with sexual reproduction and non-overlapping generations. Each ancestor at generation g in the past has a weight w which is (up to a normalization) the number of times this ancestor appears in the genealogical tree of an individual at present. The distribution Pg( w) of these weights reaches a stationary shape P∞( w), for large g, i.e., for a large number of generations back in the past. For small w, P ∞(w) is a power law ( P∞( w)∼ wβ), with a non-trivial exponent β which can be computed exactly using a standard procedure of the renormalization group approach. Some extensions of the model are discussed and the effect of these variants on the shape of P∞( w) are analysed.

  19. The effect of genealogy-based haplotypes on genomic prediction

    DEFF Research Database (Denmark)

    Edriss, Vahid; Fernando, Rohan L.; Su, Guosheng

    2013-01-01

    Background Genomic prediction uses two sources of information: linkage disequilibrium between markers and quantitative trait loci, and additive genetic relationships between individuals. One way to increase the accuracy of genomic prediction is to capture more linkage disequilibrium by regression...... on haplotypes instead of regression on individual markers. The aim of this study was to investigate the accuracy of genomic prediction using haplotypes based on local genealogy information. Methods A total of 4429 Danish Holstein bulls were genotyped with the 50K SNP chip. Haplotypes were constructed using...... local genealogical trees. Effects of haplotype covariates were estimated with two types of prediction models: (1) assuming that effects had the same distribution for all haplotype covariates, i.e. the GBLUP method and (2) assuming that a large proportion (pi) of the haplotype covariates had zero effect...

  20. A Strong Promoter Provided with the Gene Encoding Arginyl-tRNA Synthetase(argS) from Escherichia coli.

    Science.gov (United States)

    Liu, Mo-Fang; Li, Tong; Yin, Zhao-Bao; Xu, Min-Gang; Wang, En-Duo; Wang, Yin-Lai

    2000-01-01

    Previous studies showed that the gene argS encoding the arginyl-tRNA synthetase(ArgRS) from Escherichia coli(E.coli), was overexpressed 1 000 folds in the E.coli transformant TG1/pUC-argS, while the gene leuS, encoding the leucyl-tRNA synthetase(LeuRS) from E.coli, was only overproduced 35-fold in the same case. To investigate why the expression of these two aminoacyl-tRNA synthetase genes is so different, a fused gene (termed parg-leuS) was constructed by replacement of the 5' flanking region of leuS to 5' flanking region of argS. In the E.coli transformant TG1/pUC-parg-leuS, the activity of LeuRS was only improved 8.5-fold, which was much lower than that of the transformant harboring the recombinant plasmid pUC18-leuS or pKK-leuS. However, by RNA dot hybridization the amount of mRNA produced in the transcription of parg-leuS was about 5 times than that of the wild type leuS, and was similar to that of pKK-leuS, suggesting that the promoter of argS is very strong. Analysis of the secondary structure around the initiation codon among three mRNAs showed that the secondary structure of the mRNA from parg-leuS was the strongest of the three mRNAs. From the results, it could be deduced that expression of the fused gene parg-leuS might be controlled at the translational level and the strong secondary structure of this mRNA may hinder translation initiation and result in a low translation efficiency.

  1. Genealogical Information Search by Using Parent Bidirectional Breadth Algorithm and Rule Based Relationship

    CERN Document Server

    Nuanmeesri, Sumitra; Meesad, Payung

    2010-01-01

    Genealogical information is the best histories resources for culture study and cultural heritage. The genealogical research generally presents family information and depict tree diagram. This paper presents Parent Bidirectional Breadth Algorithm (PBBA) to find consanguine relationship between two persons. In addition, the paper utilizes rules based system in order to identify consanguine relationship. The study reveals that PBBA is fast to solve the genealogical information search problem and the Rule Based Relationship provides more benefits in blood relationship identification.

  2. Genealogical relationships between early medieval and modern inhabitants of Piedmont.

    Science.gov (United States)

    Vai, Stefania; Ghirotto, Silvia; Pilli, Elena; Tassi, Francesca; Lari, Martina; Rizzi, Ermanno; Matas-Lalueza, Laura; Ramirez, Oscar; Lalueza-Fox, Carles; Achilli, Alessandro; Olivieri, Anna; Torroni, Antonio; Lancioni, Hovirag; Giostra, Caterina; Bedini, Elena; Pejrani Baricco, Luisella; Matullo, Giuseppe; Di Gaetano, Cornelia; Piazza, Alberto; Veeramah, Krishna; Geary, Patrick; Caramelli, David; Barbujani, Guido

    2015-01-01

    In the period between 400 to 800 AD, also known as the period of the Barbarian invasions, intense migration is documented in the historical record of Europe. However, little is known about the demographic impact of these historical movements, potentially ranging from negligible to substantial. As a pilot study in a broader project on Medieval Europe, we sampled 102 specimens from 5 burial sites in Northwestern Italy, archaeologically classified as belonging to Lombards or Longobards, a Germanic people ruling over a vast section of the Italian peninsula from 568 to 774. We successfully amplified and typed the mitochondrial hypervariable region I (HVR-I) of 28 individuals. Comparisons of genetic diversity with other ancient populations and haplotype networks did not suggest that these samples are heterogeneous, and hence allowed us to jointly compare them with three isolated contemporary populations, and with a modern sample of a large city, representing a control for the effects of recent immigration. We then generated by serial coalescent simulations 16 millions of genealogies, contrasting a model of genealogical continuity with one in which the contemporary samples are genealogically independent from the medieval sample. Analyses by Approximate Bayesian Computation showed that the latter model fits the data in most cases, with one exception, Trino Vercellese, in which the evidence was compatible with persistence up to the present time of genetic features observed among this early medieval population. We conclude that it is possible, in general, to detect evidence of genealogical ties between medieval and specific modern populations. However, only seldom did mitochondrial DNA data allow us to reject with confidence either model tested, which indicates that broader analyses, based on larger assemblages of samples and genetic markers, are needed to understand in detail the effects of medieval migration.

  3. Introducing AstroGen: The Astronomy Genealogy Project

    OpenAIRE

    Tenn, Joseph S.

    2016-01-01

    The Astronomy Genealogy Project ("AstroGen"), a project of the Historical Astronomy Division of the American Astronomical Society (AAS), will soon appear on the AAS website. Ultimately, it will list the world's astronomers with their highest degrees, theses for those who wrote them, academic advisors (supervisors), universities, and links to the astronomers or their obituaries, their theses when on-line, and more. At present the AstroGen team is working on those who earned doctorates with ast...

  4. A genealogical map of the concept of habit

    OpenAIRE

    Barandiaran, Xabier E.; Ezequiel Alejandro Di Paolo

    2014-01-01

    The notion of information processing has dominated the study of the mind for over six decades. However, before the advent of cognitivism, one of the most prominent theoretical ideas was that of Habit. This is a concept with a rich and complex history, which is again starting to awaken interest, following recent embodied, enactive critiques of computationalist frameworks. We offer here a very brief history of the concept of habit in the form of a genealogical network-map. This serves to provi...

  5. Genealogical relationships between early medieval and modern inhabitants of Piedmont.

    Directory of Open Access Journals (Sweden)

    Stefania Vai

    Full Text Available In the period between 400 to 800 AD, also known as the period of the Barbarian invasions, intense migration is documented in the historical record of Europe. However, little is known about the demographic impact of these historical movements, potentially ranging from negligible to substantial. As a pilot study in a broader project on Medieval Europe, we sampled 102 specimens from 5 burial sites in Northwestern Italy, archaeologically classified as belonging to Lombards or Longobards, a Germanic people ruling over a vast section of the Italian peninsula from 568 to 774. We successfully amplified and typed the mitochondrial hypervariable region I (HVR-I of 28 individuals. Comparisons of genetic diversity with other ancient populations and haplotype networks did not suggest that these samples are heterogeneous, and hence allowed us to jointly compare them with three isolated contemporary populations, and with a modern sample of a large city, representing a control for the effects of recent immigration. We then generated by serial coalescent simulations 16 millions of genealogies, contrasting a model of genealogical continuity with one in which the contemporary samples are genealogically independent from the medieval sample. Analyses by Approximate Bayesian Computation showed that the latter model fits the data in most cases, with one exception, Trino Vercellese, in which the evidence was compatible with persistence up to the present time of genetic features observed among this early medieval population. We conclude that it is possible, in general, to detect evidence of genealogical ties between medieval and specific modern populations. However, only seldom did mitochondrial DNA data allow us to reject with confidence either model tested, which indicates that broader analyses, based on larger assemblages of samples and genetic markers, are needed to understand in detail the effects of medieval migration.

  6. Genealogical Relationships between Early Medieval and Modern Inhabitants of Piedmont

    Science.gov (United States)

    Vai, Stefania; Ghirotto, Silvia; Pilli, Elena; Tassi, Francesca; Lari, Martina; Rizzi, Ermanno; Matas-Lalueza, Laura; Ramirez, Oscar; Lalueza-Fox, Carles; Achilli, Alessandro; Olivieri, Anna; Torroni, Antonio; Lancioni, Hovirag; Giostra, Caterina; Bedini, Elena; Baricco, Luisella Pejrani; Matullo, Giuseppe; Di Gaetano, Cornelia; Piazza, Alberto; Veeramah, Krishna; Geary, Patrick; Caramelli, David; Barbujani, Guido

    2015-01-01

    In the period between 400 to 800 AD, also known as the period of the Barbarian invasions, intense migration is documented in the historical record of Europe. However, little is known about the demographic impact of these historical movements, potentially ranging from negligible to substantial. As a pilot study in a broader project on Medieval Europe, we sampled 102 specimens from 5 burial sites in Northwestern Italy, archaeologically classified as belonging to Lombards or Longobards, a Germanic people ruling over a vast section of the Italian peninsula from 568 to 774. We successfully amplified and typed the mitochondrial hypervariable region I (HVR-I) of 28 individuals. Comparisons of genetic diversity with other ancient populations and haplotype networks did not suggest that these samples are heterogeneous, and hence allowed us to jointly compare them with three isolated contemporary populations, and with a modern sample of a large city, representing a control for the effects of recent immigration. We then generated by serial coalescent simulations 16 millions of genealogies, contrasting a model of genealogical continuity with one in which the contemporary samples are genealogically independent from the medieval sample. Analyses by Approximate Bayesian Computation showed that the latter model fits the data in most cases, with one exception, Trino Vercellese, in which the evidence was compatible with persistence up to the present time of genetic features observed among this early medieval population. We conclude that it is possible, in general, to detect evidence of genealogical ties between medieval and specific modern populations. However, only seldom did mitochondrial DNA data allow us to reject with confidence either model tested, which indicates that broader analyses, based on larger assemblages of samples and genetic markers, are needed to understand in detail the effects of medieval migration. PMID:25635682

  7. Immune gene expression in Bombus terrestris: signatures of infection despite strong variation among populations, colonies, and sister workers.

    Directory of Open Access Journals (Sweden)

    Franziska S Brunner

    Full Text Available Ecological immunology relies on variation in resistance to parasites. Colonies of the bumblebee Bombus terrestris vary in their susceptibility to the trypanosome gut parasite Crithidia bombi, which reduces colony fitness. To understand the possible origin of this variation in resistance we assayed the expression of 28 immunologically important genes in foraging workers. We deliberately included natural variation of the host "environment" by using bees from colonies collected in two locations and sampling active foraging workers that were not age controlled. Immune gene expression patterns in response to C. bombi showed remarkable variability even among genetically similar sisters. Nevertheless, expression varied with parasite exposure, among colonies and, perhaps surprisingly, strongly among populations (collection sites. While only the antimicrobial peptide abaecin is universally up regulated upon exposure, linear discriminant analysis suggests that the overall exposure effect is driven by a combination of several immune pathways and further immune functions such as ROS regulation. Also, the differences among colonies in their immune gene expression profiles provide clues to the mechanistic basis of well-known inter-colony variation in susceptibility to this parasite. Our results show that transcriptional responses to parasite exposure can be detected in ecologically heterogeneous groups despite strong background noise.

  8. SiRNAs conjugated with aromatic compounds induce RISC-mediated antisense strand selection and strong gene-silencing activity

    Energy Technology Data Exchange (ETDEWEB)

    Kubo, Takanori, E-mail: kubo-t@yasuda-u.ac.jp [Faculty of Pharmacy, Yasuda Women' s University, 6-13-1 Yasuhigashi, Asaminami-ku, Hiroshima 731-0153 (Japan); Yanagihara, Kazuyoshi [Faculty of Pharmacy, Yasuda Women' s University, 6-13-1 Yasuhigashi, Asaminami-ku, Hiroshima 731-0153 (Japan); Division of Genetics, National Cancer Center Research Institute, 5-1-1 Tsukiji, Chuo-ku, Tokyo 104-0045 (Japan); Takei, Yoshifumi [Department of Biochemistry, Nagoya University Graduate School of Medicine, 65 Tsurumi-cho, Showa-ku, Nagoya 466-8550 (Japan); Mihara, Keichiro [Department of Hematology and Oncology, Research Institute for Radiation Biology and Medicine, Hiroshima University, 1-2-3 Kasumi, Minami-ku, Hiroshima 734-8553 (Japan); Sato, Yuichiro; Seyama, Toshio [Faculty of Pharmacy, Yasuda Women' s University, 6-13-1 Yasuhigashi, Asaminami-ku, Hiroshima 731-0153 (Japan)

    2012-10-05

    Highlights: Black-Right-Pointing-Pointer SiRNAs conjugated with aromatic compounds (Ar-siRNAs) at 5 Prime -sense strand were synthesized. Black-Right-Pointing-Pointer Ar-siRNAs increased resistance against nuclease degradation. Black-Right-Pointing-Pointer Ar-siRNAs were thermodynamically stable compared with the unmodified siRNA. Black-Right-Pointing-Pointer High levels of cellular uptake and cytoplasmic localization were found. Black-Right-Pointing-Pointer Strong gene-silencing efficacy was exhibited in the Ar-siRNAs. -- Abstract: Short interference RNA (siRNA) is a powerful tool for suppressing gene expression in mammalian cells. In this study, we focused on the development of siRNAs conjugated with aromatic compounds in order to improve the potency of RNAi and thus to overcome several problems with siRNAs, such as cellular delivery and nuclease stability. The siRNAs conjugated with phenyl, hydroxyphenyl, naphthyl, and pyrenyl derivatives showed strong resistance to nuclease degradation, and were thermodynamically stable compared with unmodified siRNA. A high level of membrane permeability in HeLa cells was also observed. Moreover, these siRNAs exhibited enhanced RNAi efficacy, which exceeded that of locked nucleic acid (LNA)-modified siRNAs, against exogenous Renilla luciferase in HeLa cells. In particular, abundant cytoplasmic localization and strong gene-silencing efficacy were found in the siRNAs conjugated with phenyl and hydroxyphenyl derivatives. The novel siRNAs conjugated with aromatic compounds are promising candidates for a new generation of modified siRNAs that can solve many of the problems associated with RNAi technology.

  9. Deep human genealogies reveal a selective advantage to be on an expanding wave front.

    Science.gov (United States)

    Moreau, Claudia; Bhérer, Claude; Vézina, Hélène; Jomphe, Michèle; Labuda, Damian; Excoffier, Laurent

    2011-11-25

    Since their origin, human populations have colonized the whole planet, but the demographic processes governing range expansions are mostly unknown. We analyzed the genealogy of more than one million individuals resulting from a range expansion in Quebec between 1686 and 1960 and reconstructed the spatial dynamics of the expansion. We find that a majority of the present Saguenay Lac-Saint-Jean population can be traced back to ancestors having lived directly on or close to the wave front. Ancestors located on the front contributed significantly more to the current gene pool than those from the range core, likely due to a 20% larger effective fertility of women on the wave front. This fitness component is heritable on the wave front and not in the core, implying that this life-history trait evolves during range expansions.

  10. A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules

    Directory of Open Access Journals (Sweden)

    Queiroux Clothilde

    2012-05-01

    Full Text Available Abstract Background We have used the genomic data in the Integrated Microbial Genomes system of the Department of Energy’s Joint Genome Institute to make predictions about rhizobial open reading frames that play a role in nodulation of host plants. The genomic data was screened by searching for ORFs conserved in α-proteobacterial rhizobia, but not conserved in closely-related non-nitrogen-fixing α-proteobacteria. Results Using this approach, we identified many genes known to be involved in nodulation or nitrogen fixation, as well as several new candidate genes. We knocked out selected new genes and assayed for the presence of nodulation phenotypes and/or nodule-specific expression. One of these genes, SMc00911, is strongly expressed by bacterial cells within host plant nodules, but is expressed minimally by free-living bacterial cells. A strain carrying an insertion mutation in SMc00911 is not defective in the symbiosis with host plants, but in contrast to expectations, this mutant strain is able to out-compete the S. meliloti 1021 wild type strain for nodule occupancy in co-inoculation experiments. The SMc00911 ORF is predicted to encode a “SodM-like” (superoxide dismutase-like protein containing a rhodanese sulfurtransferase domain at the N-terminus and a chromate-resistance superfamily domain at the C-terminus. Several other ORFs (SMb20360, SMc01562, SMc01266, SMc03964, and the SMc01424-22 operon identified in the screen are expressed at a moderate level by bacteria within nodules, but not by free-living bacteria. Conclusions Based on the analysis of ORFs identified in this study, we conclude that this comparative genomics approach can identify rhizobial genes involved in the nitrogen-fixing symbiosis with host plants, although none of the newly identified genes were found to be essential for this process.

  11. Genetic analysis of genealogies in mentally retarded autistic probands from Saguenay Lac-Saint-Jean (Quebec, Canada).

    Science.gov (United States)

    De Braekeleer, M; Tremblay, M; Thivierge, J

    1996-01-01

    Autism is a heterogeneous disorder for which we have evidence of both genetic and environmental determination. The genealogies of 16 autistic probands born in Saguenay Lac-Saint Jean were reconstructed and compared to those of 48 matched control individuals distributed in three different groups. The mean inbreeding and kinship coefficients were calculated. Both coefficients were not found to be increased in the autistic group compared to the control groups. These findings support the conclusions reached by Jorde et al. (1990) which indicated that a single gene was unlikely to account for most cases of autism.

  12. Genealogical Research and the Holland Land Company Records. Research Guide No. 55.

    Science.gov (United States)

    Safran, Franciska

    This document discusses the resources for genealogical research that are found in the Reed Library at State University of New York College at Fredonia. Card catalog subject headings pertinent to this topic are listed. A representative selection of reference books that are useful for genealogical research is presented. This bibliography is…

  13. The Miracle of Microfilm: The Foundation of the Largest Genealogical Record Collection in the World.

    Science.gov (United States)

    Powell, Ted F.

    1985-01-01

    Traces origins of the Genealogical Department of The Church of Jesus Christ of Latter-Day Saints (Mormon), highlighting microfilm technology, equipment used, development of the 16mm camera, film processing, quality control, filming techniques, specialized microfilming, archival storage (The Granite Mountain Records Vault), the genealogical library…

  14. 苏洵谱法探析%Analysis on Genealogy Rules of Su Xun

    Institute of Scientific and Technical Information of China (English)

    吴兆龙

    2016-01-01

    苏洵谱法包括小宗谱法和大宗谱法,但以小宗谱法为主。苏洵小宗谱法是指谱所有明确的世系并“详尊吾之所自出”。因其小宗谱法很难具体操作,后世家族修谱模仿者不多;有则都相应的对其进行变体改进后才用。苏洵大宗谱法是其修完族谱后补著的,更难操作,后世未曾见家族模仿过。%The genealogy rules of Su Xun includes Xiaozong genealogy rules and Dazong genealogy rules,and the Xiaozong genealogy rules is primary,and it means the specific pedigree was minutely introduced which was used little later because of hard handling in practical application. Xiaozong genealogy rules was used when it was changing somewhere. Dazong genealogy rules were supplemented when the genealogy was finished. It was hard in handling so that it was never been seen in any genealogy.

  15. The Color of Giftedness: A Policy Genealogy Implicating Educators Past, Present, and Future

    Science.gov (United States)

    Mansfield, Katherine Cumings

    2016-01-01

    This article offers a critical rereading of gifted education in the United States using a genealogical framework as defined by postcolonial theory. Using genealogy is appropriate because it sets the education profession within a family research tradition, implies the close connection between past and present, and enables us to systematically trace…

  16. A Genealogy for Finite Kneading Sequences of Bimodal Maps on the Interval

    CERN Document Server

    Ringland, J; Ringland, John; Tresser, Charles

    1993-01-01

    We generate all the finite kneading sequences of one of the two kinds of bimodal map on the interval, building each sequence uniquely from a pair of shorter ones. There is a single pair at generation 0, with members of length 1. Concomitant with this genealogy of kneading sequences is a unified genealogy of all the periodic orbits. (6/93)

  17. The genealogical gaze: family identities and family archives in the fourteenth to seventeenth centuries

    NARCIS (Netherlands)

    Ketelaar, E.

    2009-01-01

    In Renaissance Florence, early modern England, and the Netherlands during the Golden Age the "genealogical gaze" transfigured family archives into a cultural patrimony to be preserved, expanded, and transferred to future generations. Descendants, by appropriating the object of that genealogical gaze

  18. PPAR-α and PPARGC1A gene variants have strong effects on aerobic performance of Turkish elite endurance athletes.

    Science.gov (United States)

    Tural, Ercan; Kara, Nurten; Agaoglu, Seydi Ahmet; Elbistan, Mehmet; Tasmektepligil, Mehmet Yalcin; Imamoglu, Osman

    2014-09-01

    The aim of this study was to investigate the effect of PPAR-α intron 7G>C and PPARGC1A gene Gly482Ser polymorphisms on aerobic performance of elite level endurance athletes. This study was carried out on 170 individuals (60 elite level endurance athletes and 110 sedentary controls). Aerobic performance of athletes and sedentary control groups were defined by maximal oxygen uptake capacity. DNA was isolated from peripheral blood using GeneJet Genomic DNA Purification kit. Genotyping of the PPAR-α intron 7G>C and PPARGC1A Gly482Ser polymorphisms was performed using PCR-RFLP methods, and statistical evaluations were carried out using SPSS 15.0. Mean age of athletes were 21.38 ± 2.83 (18-29) and control mean age were 25.92 ± 4.88 (18-35). Mean maximal oxygen consumption of athletes were 42.14 ± 7.6 ml/(kg min) and controls were 34.33 ± 5.43 ml/(kg min). We found statistically significant differences between the athlete and control groups with respect to both PPAR-α and PPARGC1A genotype distributions (p = 0.006, performance test parameters, we found a statistically significant association between velocity, time and maximal oxygen consumption and PPAR-α and PPARGC1A genotypes (p C and PPARGC1A Gly482Ser gene polymorphisms in elite level endurance athletes. Our results suggest that PPAR-α and PPARGC1A genes have strong effect on aerobic performance of elit level athletes.

  19. [Archaeology and genealogy as methodological options of nursing research].

    Science.gov (United States)

    Azevedo, Rosemeiry Capriata de Souza; Ramos, Flavia Regina Souza

    2003-01-01

    This article is based on the historical contextualization about the development of research in nursing, presents the categories/lines of interest that support the human knowledge applied in the Doctorate Thesis in Nursing in Brazil, points out the archeological and genealogical methods proposed by Michel Foucault, and their possibility to make more difficult the day-to-day tasks of the nursing profession Whether in Institutions, Public Policies, Health Reform, and Vocational Training, in the attempt to understand which strategies, challenges, knowledge base, and practices have influenced the building of the subjects.

  20. Noisy traveling waves: Effect of selection on genealogies

    Science.gov (United States)

    Brunet, E.; Derrida, B.; Mueller, A. H.; Munier, S.

    2006-10-01

    For a family of models of evolving population under selection, which can be described by noisy traveling-wave equations, the coalescence times along the genealogical tree scale like ln αN, where N is the size of the population, in contrast with neutral models for which they scale like N. An argument relating this time scale to the diffusion constant of the noisy traveling wave leads to a prediction for α which agrees with our simulations. An exactly soluble case gives trees with statistics identical to those predicted for mean-field spin glasses by Parisi's theory.

  1. Introducing AstroGen: the Astronomy Genealogy Project

    Science.gov (United States)

    Tenn, Joseph S.

    2016-12-01

    The Astronomy Genealogy Project (AstroGen), a project of the Historical Astronomy Division of the American Astronomical Society (AAS), will soon appear on the AAS website. Ultimately, it will list the world's astronomers with their highest degrees, theses for those who wrote them, academic advisors (supervisors), universities, and links to the astronomers or their obituaries, their theses when online, and more. At present the AstroGen team is working on those who earned doctorates with astronomy-related theses. We show what can be learned already, with just ten countries essentially completed.

  2. Office and Agamben's Genealogy of Economy and Government

    DEFF Research Database (Denmark)

    Dean, Mitchell

    2017-01-01

    This paper locates Giorgio Agamben’s book Opus Dei in his larger Homo Sacer project and particularly a series of genealogical and archaeological studies within it. It argues for a disenchanted and dispersed reading of Agamben’s approach to office as a resource for concerns that are germane...... for office. More broadly, Agamben’s work on office is shown to bear upon questions of the constitution of sovereignty and government as forms of power, on different forms of rationalisation, and themes of secularisation and modernity found in classical sociology and intellectual history....

  3. Mitochondrial replacement techniques: egg donation, genealogy and eugenics.

    Science.gov (United States)

    Palacios-González, César

    2016-03-01

    Several objections against the morality of researching or employing mitochondrial replacement techniques have been advanced recently. In this paper, I examine three of these objections and show that they are found wanting. First I examine whether mitochondrial replacement techniques, research and clinical practice, should not be carried out because of possible harms to egg donors. Next I assess whether mitochondrial replacement techniques should be banned because they could affect the study of genealogical ancestry. Finally, I examine the claim that mitochondrial replacement techniques are not transferring mitochondrial DNA but nuclear DNA, and that this should be prohibited on ethical grounds.

  4. Cultural Identity and Continuity of Taiwan's Genealogy towards Their Ancestral Land--Take Genealogy of Taiwan Wang and You as Examples%台湾族谱与祖籍地文化的对接交流--以台湾王游氏族谱为例

    Institute of Scientific and Technical Information of China (English)

    曾进兴; 施婧; 郑丽霞; 胡志超

    2013-01-01

    Large spectrum of Tibetan genealogy, with family lineage as center, recorded the origin of ancestral land, history of their entering Taiwan and cultivating land in Taiwan, their rise and fall of honor and blood and lineage of their family surname. These genealogies record the ancestors’ reason and process of immigration, reproduction and distribution of their family and their encounter and living conditions, etc., maintaining the spirit of cross-strait contact with mainland. The process of checking, copying and extending the genealogy shows the Taiwan families spared no efforts to trace their origin, highlighting special kinship of the continuation of the process of cultural inheritance relationship between Taiwan and mainland, showing strong tracing feelings and identification of mainland culture. Because the number of Taiwan genealogies reach over 10,000. Therefore, Wang You's genealogy is taken as and individual case to analyze its characteristics of copying genealogy at their ancestor land, establishing family imagery boundaries, inheriting by different family and combining families of same surname. Meaning, method, and content of cross strait exchange in genealogy are explored in this paper.%大量的台湾家藏族谱以家族世系为中心,不仅记载了台湾姓氏家族的血脉世系、盛衰荣辱等内容,还追述了先祖移民台湾的缘由经过、家族在台的分布繁衍及生活状况遭遇等,自觉地表现与祖地的渊源关系、血脉亲情。台湾移垦家族重视通过族谱加强与祖籍地亲族的联系,在开展抄谱、对谱、祭祖等活动中努力追根溯源,彰显与大陆祖地之间特殊的源流关系,表现出了强烈寻祖追根的慎终情怀和对祖地文化的高度认同。选取台湾王游氏族谱进行个案研究,分析台湾家族回祖籍地抄对族谱、确立家族意象界限及异姓承祧、同姓联宗等活动的特点,探讨两岸族谱文化交流的意义、方式、内容。

  5. Genealogical data in population medical genetics: Field guidelines

    Science.gov (United States)

    Poletta, Fernando A.; Orioli, Ieda M.; Castilla, Eduardo E.

    2014-01-01

    This is a guide for fieldwork in Population Medical Genetics research projects. Data collection, handling, and analysis from large pedigrees require the use of specific tools and methods not widely familiar to human geneticists, unfortunately leading to ineffective graphic pedigrees. Initially, the objective of the pedigree must be decided, and the available information sources need to be identified and validated. Data collection and recording by the tabulated method is advocated, and the involved techniques are presented. Genealogical and personal information are the two main components of pedigree data. While the latter is unique to each investigation project, the former is solely represented by gametic links between persons. The triad of a given pedigree member and its two parents constitutes the building unit of a genealogy. Likewise, three ID numbers representing those three elements of the triad is the record field required for any pedigree analysis. Pedigree construction, as well as pedigree and population data analysis, varies according to the pre-established objectives, the existing information, and the available resources. PMID:24764752

  6. Counselling against HIV in Africa: a genealogy of confessional technologies.

    Science.gov (United States)

    Nguyen, Vinh-Kim

    2013-01-01

    This paper contextualises counselling within a broader historical formation that links disclosure to healing and deploys confessional technologies to incite disclosure and awareness of the mysterious substance of the self. Foucault's argument that sexuality was the privileged arena for using confessional technologies to 'produce' the truth of the self is particularly relevant in light of the diffusion of counselling practices in Africa in the wake of the HIV epidemic, particularly with their emphasis on inciting appropriate sexual behaviour. Examination of the historical assemblage of counselling practices shows how they articulate what the self is, the nature of truth and a politics of language. This paper focuses on the genealogy of four key assumptions that express this confessional reason. These are that: (1) people can be 'empowered' to have control on their own lives by working on themselves, (2) secrets untold become pathogens, (3) the ability to heal requires that one first overcome personal illness, (4) the experience of sharing secrets is cathartic and healing. The genealogy intertwines four strands: that of the Unconscious as revealed by Freud and his followers, attempts to treat shell-shocked veterans of World War I, group psychotherapy and participatory research after World War II.

  7. Genealogical data in population medical genetics: field guidelines

    Directory of Open Access Journals (Sweden)

    Fernando A. Poletta

    2014-01-01

    Full Text Available This is a guide for fieldwork in Population Medical Genetics research projects. Data collection, handling, and analysis from large pedigrees require the use of specific tools and methods not widely familiar to human geneticists, unfortunately leading to ineffective graphic pedigrees. Initially, the objective of the pedigree must be decided, and the available information sources need to be identified and validated. Data collection and recording by the tabulated method is advocated, and the involved techniques are presented. Genealogical and personal information are the two main components of pedigree data. While the latter is unique to each investigation project, the former is solely represented by gametic links between persons. The triad of a given pedigree member and its two parents constitutes the building unit of a genealogy. Likewise, three ID numbers representing those three elements of the triad is the record field required for any pedigree analysis. Pedigree construction, as well as pedigree and population data analysis, varies according to the pre-established objectives, the existing information, and the available resources.

  8. An academic genealogy on the history of American field primatologists.

    Science.gov (United States)

    Kelley, Elizabeth A; Sussman, Robert W

    2007-03-01

    In this paper, we present the academic genealogy of American field primatologists. The genealogy has been compiled to formally document the historical record of this young field. Data have been collected from three main sources: 1) e-mail surveys, 2) library and Internet research, and 3) verbal communication through forums such as American Association of Physical Anthropology meetings. Lineages of primatologists have been graphically displayed using Microsoft Visio. As of September 2005, 672 names and 239 affiliated universities, organizations and institutions have been recorded in 19 lineages. Five hundred and thirty-eight of the 672 names, 80.1%, are field primatologists. The Hooton/Washburn lineage is the largest; 60.6% of the recorded field primatologists are linked to this lineage. In addition, four of the five professors who have mentored a comparable number of field primatologists at American universities since Washburn are linked to the Hooton/Washburn lineage; and the school where Washburn mentored a majority of his students, UC-Berkeley, continues to have the highest overall graduation record for this subdiscipline. However, the field of primatology has been diversifying since the 1960s, and different universities are now responsible for graduating a substantial number of primatologists. We conclude that while the Hooton/Washburn lineage has remained remarkably homogenous in its anthropological focus, the field is also becoming increasingly enriched by primatologists who have had training in fields such as zoology, psychology, and ecology both in the United States and abroad.

  9. A Genomic Island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement.

    Science.gov (United States)

    Chandry, P Scott; Gladman, Simon; Moore, Sean C; Seemann, Torsten; Crandall, Keith A; Fegan, Narelle

    2012-01-01

    The genomic island encoding the locus of enterocyte effacement (LEE) is an important virulence factor of the human pathogenic Escherichia coli. LEE typically encodes a type III secretion system (T3SS) and secreted effectors capable of forming attaching and effacing lesions. Although prominent in the pathogenic E. coli such as serotype O157:H7, LEE has also been detected in Citrobacter rodentium, E. albertii, and although not confirmed, it is likely to also be in Shigella boydii. Previous phylogenetic analysis of LEE indicated the genomic island was evolving through stepwise acquisition of various components. This study describes a new LEE region from two strains of Salmonella enterica subspecies salamae serovar Sofia along with a phylogenetic analysis of LEE that provides new insights into the likely evolution of this genomic island. The Salmonella LEE contains 36 of the 41 genes typically observed in LEE within a genomic island of 49, 371 bp that encodes a total of 54 genes. A phylogenetic analysis was performed on the entire T3SS and four T3SS genes (escF, escJ, escN, and escV) to elucidate the genealogy of LEE. Phylogenetic analysis inferred that the previously known LEE islands are members of a single lineage distinct from the new Salmonella LEE lineage. The previously known lineage of LEE diverged between islands found in Citrobacter and those in Escherichia and Shigella. Although recombination and horizontal gene transfer are important factors in the genealogy of most genomic islands, the phylogeny of the T3SS of LEE can be interpreted with a bifurcating tree. It seems likely that the LEE island entered the Enterobacteriaceae through horizontal gene transfer as a single unit, rather than as separate subsections, which was then subjected to the forces of both mutational change and recombination.

  10. A Genomic Island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement.

    Directory of Open Access Journals (Sweden)

    P Scott Chandry

    Full Text Available The genomic island encoding the locus of enterocyte effacement (LEE is an important virulence factor of the human pathogenic Escherichia coli. LEE typically encodes a type III secretion system (T3SS and secreted effectors capable of forming attaching and effacing lesions. Although prominent in the pathogenic E. coli such as serotype O157:H7, LEE has also been detected in Citrobacter rodentium, E. albertii, and although not confirmed, it is likely to also be in Shigella boydii. Previous phylogenetic analysis of LEE indicated the genomic island was evolving through stepwise acquisition of various components. This study describes a new LEE region from two strains of Salmonella enterica subspecies salamae serovar Sofia along with a phylogenetic analysis of LEE that provides new insights into the likely evolution of this genomic island. The Salmonella LEE contains 36 of the 41 genes typically observed in LEE within a genomic island of 49, 371 bp that encodes a total of 54 genes. A phylogenetic analysis was performed on the entire T3SS and four T3SS genes (escF, escJ, escN, and escV to elucidate the genealogy of LEE. Phylogenetic analysis inferred that the previously known LEE islands are members of a single lineage distinct from the new Salmonella LEE lineage. The previously known lineage of LEE diverged between islands found in Citrobacter and those in Escherichia and Shigella. Although recombination and horizontal gene transfer are important factors in the genealogy of most genomic islands, the phylogeny of the T3SS of LEE can be interpreted with a bifurcating tree. It seems likely that the LEE island entered the Enterobacteriaceae through horizontal gene transfer as a single unit, rather than as separate subsections, which was then subjected to the forces of both mutational change and recombination.

  11. Tracing the Genealogy of Elementary Education Policy in India Till Independence

    Directory of Open Access Journals (Sweden)

    S. Venkatanarayanan

    2013-11-01

    Full Text Available This article attempts to trace the genealogy of elementary education policy in India under the colonial rule of the Portuguese, Dutch, French, and the British till its independence in 1947. It records the development of school education historically and the policy changes with regard to elementary education under various periods of colonial rule. The political economy of elementary education was traced historically from the time of Portuguese arrival in India in the 1400s. The policy changes and the public expenditure on education during the British colonial period have laid a strong foundation for the modern educational development of free India after its independence. The contemporary school educational structure in India has its strong roots in the colonial education structure and management. Despite elementary education being considered as an important area to focus and develop during the colonial period, it has never received the needed resources to strengthen itself. This paper will lay the larger structural map of political economy of school education till the time of independence to understand the contemporary school education in a more nuanced manner.

  12. GENEALOGI DAN PENYEBARAN THARIQAH QADIRIYAH WA NAQSHABANDIYAH DI JAWA

    Directory of Open Access Journals (Sweden)

    Aly Mashar

    2016-11-01

    Full Text Available This article investigates the geneology and spread of Thariqah Qadiriyah wa Naqshabandiyah in Java. Based on the previous literatures (Dhofier, Martin van Bruinessen, Zulkifli, and Mulyati, it was found out that in Java the genealogy of the thariqah formed by Syekh Ahmad Khatib Sambas directed to the three primary khalifah, i.e. Syekh Abdul Karim Banten, Syekh Ahmad Thalhah Cirebon, and Syekh Muhammad Hasbullah Madura, then spread out across Java Island through the four centers (on 1970s, such as Suryalaya, Rejoso, Mranggen, and Pangentongan. However, the writer found out that there were four khalifahs, including Syekhona Kholil Bangkalan Madura; with the nine dissemination centers (in 1970s including Berjan Purworejo, Sawah Pulo Surabaya, Cukir Jombang, Kencong Kediri, and Dawe Kudus.

  13. Sex and monstrosity. A genealogy of the sexual police

    Directory of Open Access Journals (Sweden)

    Antón Fernández de Rota Irimia

    2015-07-01

    Full Text Available This essay outlines different forms of Western sexual police from the Seventeen Century to the present. The genealogy will approach the problem from the point of view of hermaphroditism and transvestism. By “sexual police” I mean the determinations, forms, norms and ethos that defines sex through times, as well as the categories of which it is composed, and what is permitted and is possible to do, see and say through these sexual categories. This essay, pays special attention to the fears and its embodiment in some paradigmatic figures. In particular, it analyzes the historical meaning of sexual “monstrosity”, key to understand the different polices, including the own sexual police of gender feminism.

  14. The genealogy of branching Brownian motion with absorption

    CERN Document Server

    Berestycki, Julien; Schweinsberg, Jason

    2010-01-01

    We consider a system of particles which perform branching Brownian motion with negative drift and are killed upon reaching zero, in the near-critical regime where the total population stays roughly constant with approximately N particles. We show that the characteristic time scale for the evolution of this population is of order (log N)^3, in the sense that when time is measured in these units, the scaled number of particles converges to a variant of Neveu's continuous-state branching process. Furthermore, the genealogy of the particles is then governed by a coalescent process known as the Bolthausen-Sznitman coalescent. This validates the non-rigorous predictions by Brunet, Derrida, Muller, and Munier for a closely related model.

  15. Genealogical tree of Russian schools on Nonlinear Dynamics

    CERN Document Server

    Prants, S V

    2015-01-01

    One of the most prominent feature of research in Russia and the former Soviet Union is so-called scientific schools. It is a collaboration of researchers with a common scientific background working, as a rule, together in a specific city or even at an institution. The genealogical tree of scientific schools on nonlinear dynamics in Russia and the former Soviet Union is grown. We use these terminology in a broad sense including theory of dynamical systems and chaos and its applications in nonlinear physics. In most cases we connect two persons if one was an advisor of the Doctoral thesis of another one. It is an analogue of the Candidate of Science thesis in Russia. If the person had no official advisor or we don't know exactly who was an advisor, we fix that person who was known to be an informal teacher and has influenced on him/her very much.

  16. The archaeology and genealogy of mentorship in English nursing.

    Science.gov (United States)

    Fulton, John

    2015-03-01

    In the United Kingdom, the concept of mentorship has been central to nurse education since the 1980s. Mentorship has become the definitive term used to denote the supervisory relationship of the student nurse with a qualified nurse who monitors and evaluates their skill development in the clinical area. The background against which the concept was established is examined through a consideration of the concepts of archaeology of knowledge and genealogy of knowledge as conceptualised by Michel Foucault. In particular, the Foucauldian concepts of power, discourses and the gaze are used to direct and shape the analysis. The paper explores the interplay of managerial dominance and professionalism and the ways in which mentorship can be used as a means of control and surveillance.

  17. Erving Goffman: vida y genealogía intelectual

    Directory of Open Access Journals (Sweden)

    Urteaga, Eguzki

    2010-06-01

    Full Text Available What does happen when two or more persons are in a face to face situation? How the interaction develops when one of them commits an infamy, presents a physical disability or if he is considered as a mental patient? Erving Goffman (1922-1982, of Canadian origin, has tried to answer to this type of questions along his research life. It result an abundant, exciting but also controversial work because if some analysts see in Goffman the principal sociologist of the second half of the 20th century, others think that his analyses only constitute the reflection of a «petit bourgeois» point of view on the urban American society. This article presents both the life and the intellectual genealogy of this sociologist.

    ¿Qué sucede cuando dos o más personas se encuentran en una situación de cara a cara? ¿Cómo se desarrolla la interacción cuando una de ellas comete una torpeza o presenta una discapacidad física o si está considerada como una enferma mental? Erving Goffman (1922-1982, de origen canadiense, ha intentado contestar a ese tipo de preguntas a lo largo de su vida investigadora. Resulta de todo ello una obra abundante, apasionante pero también controvertida, puesto que algunos analistas ven en Goffman el mayor sociólogo de la segunda mitad del siglo XX mientras que otros consideran que sus análisis solo constituyen el reflejo de un punto de vista «pequeño-burgués» sobre la sociedad urbana americana. Este artículo presenta tanto la vida como la genealogía intelectual de ese sociólogo.

  18. Theories of Population Variation in Genes and Genomes

    DEFF Research Database (Denmark)

    Christiansen, Freddy

    genetics, while emphasizing the close interplay between theory and empiricism. Traditional topics such as genetic and phenotypic variation, mutation, migration, and linkage are covered and advanced by contemporary coalescent theory, which describes the genealogy of genes in a population, ultimately...

  19. Critical Policy Sociology: Historiography, Archaeology and Genealogy as Methods of Policy Analysis.

    Science.gov (United States)

    Gale, Trevor

    2001-01-01

    Examines the essential characteristics of three approaches to conducting critical policy sociology of higher education: Historiography, archaeology, and genealogy. Draws on Australian higher education policy research to illustrate the use of these three methods. (Contains 65 references.) (PKP)

  20. [Genealogy of the Meckel anatomy family (from Hem[b]sbach)].

    Science.gov (United States)

    Viebig, Michael; Schultka, Rüdiger

    2002-11-01

    The main goal of our investigations is to complete the genealogy of the famous Meckel dynasty. It is important to answer a lot of questions which have remained unanswered until now. During the investigations we were able to find the names of three children who died early and were dissected by their father Philipp Friedrich Theodor Meckel (1755-1803). Besides, it was possible to extend distinctly our knowledge of the various genealogical lines of the Meckel family.

  1. Prosperity of genealogy learning in the study of history%谱学兴盛之于历史研究

    Institute of Scientific and Technical Information of China (English)

    任海龙

    2014-01-01

    在对家谱的收集、整理与研究方面,近年来成绩显著。谱学的兴盛进一步丰富了历史研究。在利用家谱文献时,应讲求策略,不可将家谱内容当作史实本身。%These years, genealogies of collecting, sorting and research result is significant. Prosperity of genealogy further enrich the study of history. When using genealogy class literature, should be particular about strategy, content may not be genealogies as history itself.

  2. Genealogy of instruments for prodrome evaluation of psychosis

    Directory of Open Access Journals (Sweden)

    Jean-Gabriel eDaneault

    2013-04-01

    Full Text Available Objective: Over the last fifteen years, researchers from around the world have developed instruments for assessing the risk of conversion to psychosis. The objective of this article is to review the literature on these instruments by focusing on genealogy links and on their performance in predicting conversion to psychosis. Method: A systematic review of articles published since 1980 relating to risk assessment instruments for conversion to psychosis by manual search and consultation of electronic databases MEDLINE, EMBASE and PsycINFO. Results: Three hundred and ninety one (391 publications were selected and analyzed. Among these, 22 instruments were identified. These instruments are briefly described and placed on a timeline according to their year of publication. A code of positions, patterns and forms is used to schematize the characteristics of each instrument. A table is presented to show changes in rates of conversion to psychosis within cohorts of subjects considered at risk according to the instruments. A second code of shades and outlines is used to schematize the characteristics of each cohort of patients. The two graphics set the stage for a discussion about the major strategies that were adopted to improve the performance of risk assessment instruments. Conclusions: These graphics allow a better understanding of the origin, evolution, current status, strengths, shortcomings and future prospects of research on risk assessment instruments.

  3. Replication of genetic associations as pseudoreplication due to shared genealogy.

    Science.gov (United States)

    Rosenberg, Noah A; Vanliere, Jenna M

    2009-09-01

    The genotypes of individuals in replicate genetic association studies have some level of correlation due to shared descent in the complete pedigree of all living humans. As a result of this genealogical sharing, replicate studies that search for genotype-phenotype associations using linkage disequilibrium between marker loci and disease-susceptibility loci can be considered as "pseudoreplicates" rather than true replicates. We examine the size of the pseudoreplication effect in association studies simulated from evolutionary models of the history of a population, evaluating the excess probability that both of a pair of studies detect a disease association compared to the probability expected under the assumption that the two studies are independent. Each of nine combinations of a demographic model and a penetrance model leads to a detectable pseudoreplication effect, suggesting that the degree of support that can be attributed to a replicated genetic association result is less than that which can be attributed to a replicated result in a context of true independence.

  4. Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

    Science.gov (United States)

    Ness, Rob W; Graham, Sean W; Barrett, Spencer C H

    2011-11-01

    Most plant phylogenetic inference has used DNA sequence data from the plastid genome. This genome represents a single genealogical sample with no recombination among genes, potentially limiting the resolution of evolutionary relationships in some contexts. In contrast, nuclear DNA is inherently more difficult to employ for phylogeny reconstruction because major mutational events in the genome, including polyploidization, gene duplication, and gene extinction can result in homologous gene copies that are difficult to identify as orthologs or paralogs. Gene tree parsimony (GTP) can be used to infer the rooted species tree by fitting gene genealogies to species trees while simultaneously minimizing the estimated number of duplications needed to reconcile conflicts among them. Here, we use GTP for five nuclear gene families and a previously published plastid data set to reconstruct the phylogenetic backbone of the aquatic plant family Pontederiaceae. Plastid-based phylogenetic studies strongly supported extensive paraphyly of Eichhornia (one of the four major genera) but also depicted considerable ambiguity concerning the true root placement for the family. Our results indicate that species trees inferred from the nuclear genes (alone and in combination with the plastid data) are highly congruent with gene trees inferred from plastid data alone. Consideration of optimal and suboptimal gene tree reconciliations place the root of the family at (or near) a branch leading to the rare and locally restricted E. meyeri. We also explore methods to incorporate uncertainty in individual gene trees during reconciliation by considering their individual bootstrap profiles and relate inferred excesses of gene duplication events on individual branches to whole-genome duplication events inferred for the same branches. Our study improves understanding of the phylogenetic history of Pontederiaceae and also demonstrates the utility of GTP for phylogenetic analysis.

  5. Bio science: genetic genealogy testing and the pursuit of African ancestry.

    Science.gov (United States)

    Nelson, Alondra

    2008-10-01

    This paper considers the extent to which the geneticization of 'race' and ethnicity is the prevailing outcome of genetic testing for genealogical purposes. The decoding of the human genome precipitated a change of paradigms in genetics research, from an emphasis on genetic similarity to a focus on molecular-level differences among individuals and groups. This shift from lumping to splitting spurred ongoing disagreements among scholars about the significance of 'race' and ethnicity in the genetics era. I characterize these divergent perspectives as 'pragmatism' and 'naturalism'. Drawing upon ethnographic fieldwork and interviews, I argue that neither position fully accounts for how understandings of 'race' and ethnicity are being transformed with genetic genealogy testing. While there is some acquiescence to genetic thinking about ancestry, and by implication, 'race', among African-American and black British consumers of genetic genealogy testing, test-takers also adjudicate between sources of genealogical information and from these construct meaningful biographical narratives. Consumers engage in highly situated 'objective' and 'affiliative' self-fashioning, interpreting genetic test results in the context of their 'genealogical aspirations'. I conclude that issues of site, scale, and subjectification must be attended to if scholars are to understand whether and to what extent social identities are being transformed by recent developments in genetic science.

  6. Strong effect of SNP rs4988300 of the LRP5 gene on bone phenotype of Caucasian postmenopausal women.

    Science.gov (United States)

    Horváth, Péter; Balla, Bernadett; Kósa, János P; Tóbiás, Bálint; Szili, Balázs; Kirschner, Gyöngyi; Győri, Gabriella; Kató, Karina; Lakatos, Péter; Takács, István

    2016-01-01

    The purpose of this study was to identify relationships between single nucleotide polymorphisms (SNPs) in the genes of the Wnt pathway and bone mineral density (BMD) of postmenopausal women. We chose this pathway due to its importance in bone metabolism that was underlined in several studies. DNA samples of 932 Hungarian postmenopausal women were studied. First, their BMD values at different sites (spine, total hip) were measured, using a Lunar Prodigy DXA scanner. Thereafter, T-score values and the patients' body mass indices (BMIs) were calculated, while information about the fracture history of the sample population was also collected. We genotyped nine SNPs of the following three genes: LRP5, GPR177, and SP7, using a Sequenom MassARRAY Analyzer 4 instrument. The genomic DNA samples used for genotyping were extracted from the buccal mucosa of the subjects. Statistical analyses were carried out using the SPSS 21 and R package. The results of this analysis showed a significant association between SNP rs4988300 of the LRP5 gene and total hip BMD values. We could not reveal any associations between the markers of GPR177, SP7, and bone phenotypes. We found no effect of these genotypes on fracture risk. We could demonstrate a significant gene-gene interaction between two SNPs of LRP5 (rs4988300 and rs634008, p = 0.009) which was lost after Bonferroni correction. We could firmly demonstrate a significant association between rs4988300 of the LRP5 gene and bone density of the hip on the largest homogeneous postmenopausal study group analyzed to date. Our finding corroborates the relationship between LRP5 genotype and bone phenotype in postmenopausal women, however, the complete mechanism of this relationship requires further investigations.

  7. The genealogy of personal names: towards a more productive method in historical onomastics.

    Science.gov (United States)

    Kotilainen, Sofia

    2011-01-01

    It is essential to combine genealogical and collective biographical approaches with network analysis if one wants to take full advantage of the evidence provided by (hereditary) personal names in historical and linguistic onomastic research. The naming practices of rural families and clans from the 18th to the 20th century can bring us much fresh information about their enduring attitudes and values, as well as about other mentalities of everyday life. Personal names were cultural symbols that contained socially shared meanings. With the help of genealogical method it is possible to obtain a more nuanced understanding of these past naming practices, for example by comparing the conventions of different communities. A long-term and systematic empirical research also enables us to dispute certain earlier assumptions that have been taken for granted in historical onomastics. Therefore, the genealogical method is crucial in studying the criteria for the choices of personal names in the past.

  8. Molecular genealogy tools for white-tailed deer with chronic wasting disease.

    Science.gov (United States)

    Ernest, Holly B; Hoar, Bruce R; Well, Jay A; O'Rourke, Katherine I

    2010-04-01

    Molecular genetic data provide powerful tools for genealogy reconstruction to reveal mechanisms underlying disease ecology. White-tailed deer (Odocoileus virginianus) congregate in matriarchal groups; kin-related close social spacing may be a factor in the spread of infectious diseases. Spread of chronic wasting disease (CWD), a prion disorder of deer and their cervid relatives, is presumed to be associated with direct contact between individuals and by exposure to shared food and water sources contaminated with prions shed by infected deer. Key aspects of disease ecology are yet unknown. DNA tools for pedigree reconstruction were developed to fill knowledge gaps in disease dynamics in prion-infected wild animals. Kinship indices using data from microsatellite loci and sequence haplotypes of mitochondrial DNA were employed to assemble genealogies. Molecular genealogy tools will be useful for landscape-level population genetic research and monitoring, in addition to epidemiologic studies examining transmission of CWD in captive and free-ranging cervids.

  9. Maternal genealogical patterns of chicken breeds sampled in Europe.

    Science.gov (United States)

    Lyimo, C M; Weigend, A; Msoffe, P L; Hocking, P M; Simianer, H; Weigend, S

    2015-08-01

    The aim of this study was to investigate the maternal genealogical pattern of chicken breeds sampled in Europe. Sequence polymorphisms of 1256 chickens of the hypervariable region (D-loop) of mitochondrial DNA (mtDNA) were used. Median-joining networks were constructed to establish evolutionary relationships among mtDNA haplotypes of chickens, which included a wide range of breeds with different origin and history. Chicken breeds which have had their roots in Europe for more than 3000 years were categorized by their founding regions, encompassing Mediterranean type, East European type and Northwest European type. Breeds which were introduced to Europe from Asia since the mid-19th century were classified as Asian type, and breeds based on crossbreeding between Asian breeds and European breeds were classified as Intermediate type. The last group, Game birds, included fighting birds from Asia. The classification of mtDNA haplotypes was based on Liu et al.'s (2006) nomenclature. Haplogroup E was the predominant clade among the European chicken breeds. The results showed, on average, the highest number of haplotypes, highest haplotype diversity, and highest nucleotide diversity for Asian type breeds, followed by Intermediate type chickens. East European and Northwest European breeds had lower haplotype and nucleotide diversity compared to Mediterranean, Intermediate, Game and Asian type breeds. Results of our study support earlier findings that chicken breeds sampled in Europe have their roots in the Indian subcontinent and East Asia. This is consistent with historical and archaeological evidence of chicken migration routes to Europe. © 2015 Stichting International Foundation for Animal Genetics.

  10. A genealogical map of the concept of habit

    Directory of Open Access Journals (Sweden)

    Xabier E Barandiaran

    2014-07-01

    Full Text Available The notion of information processing has dominated the study of the mind for over six decades. However, before the advent of cognitivism, one of the most prominent theoretical ideas was that of Habit. This is a concept with a rich and complex history, which is again starting to awaken interest, following recent embodied, enactive critiques of computationalist frameworks. We offer here a very brief history of the concept of habit in the form of a genealogical network-map. This serves to provide an overview of the richness of this notion and as a guide for further re-appraisal. We identify 77 thinkers and their influences, and group them into seven schools of thought. Two major trends can be distinguished. One is the associationist trend, starting with the work of Locke and Hume, developed by Hartley, Bain and Mill to be later absorbed into behaviourism through pioneering animal psychologists (Morgan and Thorndike. This tradition conceived of habits atomistically and as automatisms (a conception later debunked by cognitivism. Another historical trend we have called organicism inherits the legacy of Aristotle and develops along German idealism, French spiritualism, pragmatism, and phenomenology. It feeds into the work of continental psychologists in the early 20th century, influencing important figures such as Merleau-Ponty, Piaget, and Gibson. But it has not yet been taken up by mainstream cognitive neuroscience and psychology. Habits, in this tradition, are seen as ecological, self-organizing structures that relate to a web of predispositions and plastic dependencies both in the agent and in the environment. In addition, they are not conceptualized in opposition to rational, volitional processes, but as transversing a continuum from reflective to embodied intentionality. These are properties that make habit a particularly attractive idea for embodied, enactive perspectives, which can now re-evaluate it in light of dynamical systems theory and

  11. A genealogical map of the concept of habit

    Science.gov (United States)

    Barandiaran, Xabier E.; Di Paolo, Ezequiel A.

    2014-01-01

    The notion of information processing has dominated the study of the mind for over six decades. However, before the advent of cognitivism, one of the most prominent theoretical ideas was that of Habit. This is a concept with a rich and complex history, which is again starting to awaken interest, following recent embodied, enactive critiques of computationalist frameworks. We offer here a very brief history of the concept of habit in the form of a genealogical network-map. This serves to provide an overview of the richness of this notion and as a guide for further re-appraisal. We identify 77 thinkers and their influences, and group them into seven schools of thought. Two major trends can be distinguished. One is the associationist trend, starting with the work of Locke and Hume, developed by Hartley, Bain, and Mill to be later absorbed into behaviorism through pioneering animal psychologists (Morgan and Thorndike). This tradition conceived of habits atomistically and as automatisms (a conception later debunked by cognitivism). Another historical trend we have called organicism inherits the legacy of Aristotle and develops along German idealism, French spiritualism, pragmatism, and phenomenology. It feeds into the work of continental psychologists in the early 20th century, influencing important figures such as Merleau-Ponty, Piaget, and Gibson. But it has not yet been taken up by mainstream cognitive neuroscience and psychology. Habits, in this tradition, are seen as ecological, self-organizing structures that relate to a web of predispositions and plastic dependencies both in the agent and in the environment. In addition, they are not conceptualized in opposition to rational, volitional processes, but as transversing a continuum from reflective to embodied intentionality. These are properties that make habit a particularly attractive idea for embodied, enactive perspectives, which can now re-evaluate it in light of dynamical systems theory and complexity research

  12. A genealogical map of the concept of habit.

    Science.gov (United States)

    Barandiaran, Xabier E; Di Paolo, Ezequiel A

    2014-01-01

    The notion of information processing has dominated the study of the mind for over six decades. However, before the advent of cognitivism, one of the most prominent theoretical ideas was that of Habit. This is a concept with a rich and complex history, which is again starting to awaken interest, following recent embodied, enactive critiques of computationalist frameworks. We offer here a very brief history of the concept of habit in the form of a genealogical network-map. This serves to provide an overview of the richness of this notion and as a guide for further re-appraisal. We identify 77 thinkers and their influences, and group them into seven schools of thought. Two major trends can be distinguished. One is the associationist trend, starting with the work of Locke and Hume, developed by Hartley, Bain, and Mill to be later absorbed into behaviorism through pioneering animal psychologists (Morgan and Thorndike). This tradition conceived of habits atomistically and as automatisms (a conception later debunked by cognitivism). Another historical trend we have called organicism inherits the legacy of Aristotle and develops along German idealism, French spiritualism, pragmatism, and phenomenology. It feeds into the work of continental psychologists in the early 20th century, influencing important figures such as Merleau-Ponty, Piaget, and Gibson. But it has not yet been taken up by mainstream cognitive neuroscience and psychology. Habits, in this tradition, are seen as ecological, self-organizing structures that relate to a web of predispositions and plastic dependencies both in the agent and in the environment. In addition, they are not conceptualized in opposition to rational, volitional processes, but as transversing a continuum from reflective to embodied intentionality. These are properties that make habit a particularly attractive idea for embodied, enactive perspectives, which can now re-evaluate it in light of dynamical systems theory and complexity research.

  13. The strong selective sweep candidate gene ADRA2C does not explain domestication related changes in the stress response of chickens.

    Science.gov (United States)

    Elfwing, Magnus; Fallahshahroudi, Amir; Lindgren, Isa; Jensen, Per; Altimiras, Jordi

    2014-01-01

    Analysis of selective sweeps to pinpoint causative genomic regions involved in chicken domestication has revealed a strong selective sweep on chromosome 4 in layer chickens. The autoregulatory α-adrenergic receptor 2C (ADRA2C) gene is the closest to the selective sweep and was proposed as an important gene in the domestication of layer chickens. The ADRA2C promoter region was also hypermethylated in comparison to the non-selected ancestor of all domesticated chicken breeds, the Red Junglefowl, further supporting its relevance. In mice the receptor is involved in the fight-or-flight response as it modulates epinephrine release from the adrenals. To investigate the involvement of ADRA2C in chicken domestication, we measured gene expression in the adrenals and radiolabeled receptor ligand in three brain regions comparing the domestic White Leghorn strain with the wild ancestor Red Junglefowl. In adrenals ADRA2C was twofold greater expressed than the related receptor gene ADRA2A, indicating that ADRA2C is the predominant modulator of epinephrine release but no strain differences were measured. In hypothalamus and amygdala, regions associated with the stress response, and in striatum, receptor binding pIC50 values ranged between 8.1-8.4, and the level was not influenced by the genotyped allele. Because chicken strains differ in morphology, physiology and behavior, differences attributed to a single gene may be lost in the noise caused by the heterogeneous genetic background. Therefore an F10 advanced intercross strain between White Leghorn and Red Junglefowl was used to investigate effects of ADRA2C alleles on fear related behaviors and fecundity. We did not find compelling genotype effects in open field, tonic immobility, aerial predator, associative learning or fecundity. Therefore we conclude that ADRA2C is probably not involved in the domestication of the stress response in chicken, and the strong selective sweep is probably caused by selection of some unknown

  14. Cysteine-rich secretory protein-3 (CRISP3 is strongly up-regulated in prostate carcinomas with the TMPRSS2-ERG fusion gene.

    Directory of Open Access Journals (Sweden)

    Franclim R Ribeiro

    Full Text Available A large percentage of prostate cancers harbor TMPRSS2-ERG gene fusions, leading to aberrant overexpression of the transcription factor ERG. The target genes deregulated by this rearrangement, however, remain mostly unknown. To address this subject we performed genome-wide mRNA expression analysis on 6 non-malignant prostate samples and 24 prostate carcinomas with (n = 16 and without (n = 8 TMPRSS2-ERG fusion as determined by FISH. The top-most differentially expressed genes and their associations with ERG over-expression were technically validated by quantitative real-time PCR and biologically validated in an independent series of 200 prostate carcinomas. Several genes encoding metabolic enzymes or extracellular/transmembrane proteins involved in cell adhesion, matrix remodeling and signal transduction pathways were found to be co-expressed with ERG. Within those significantly over-expressed in fusion-positive carcinomas, CRISP3 showed more than a 50-fold increase when compared to fusion-negative carcinomas, whose expression levels were in turn similar to that of non-malignant samples. In the independent validation series, ERG and CRISP3 mRNA levels were strongly correlated (r(s = 0.65, p<0.001 and both were associated with pT3 disease staging. Furthermore, immunohistochemistry results showed CRISP3 protein overexpression in 63% of the carcinomas and chromatin immunoprecipitation with an anti-ERG antibody showed that CRISP3 is a direct target of the transcription factor ERG. We conclude that ERG rearrangement is associated with significant expression alterations in genes involved in critical cellular pathways that define a subset of locally advanced PCa. In particular, we show that CRISP3 is a direct target of ERG that is strongly overexpressed in PCa with the TMPRSS2-ERG fusion gene.

  15. Using Genealogical Mapping and Genetic Neighborhood Sizes to Quantify Dispersal Distances in the Neotropical Passerine, the Black-Capped Vireo.

    Science.gov (United States)

    Athrey, Giridhar; Lance, Richard F; Leberg, Paul L

    2015-01-01

    Dispersal is a key demographic process, ultimately responsible for genetic connectivity among populations. Despite its importance, quantifying dispersal within and between populations has proven difficult for many taxa. Even in passerines, which are among the most intensely studied, individual movement and its relation to gene flow remains poorly understood. In this study we used two parallel genetic approaches to quantify natal dispersal distances in a Neotropical migratory passerine, the black-capped vireo. First, we employed a strategy of sampling evenly across the landscape coupled with parentage assignment to map the genealogical relationships of individuals across the landscape, and estimate dispersal distances; next, we calculated Wright's neighborhood size to estimate gene dispersal distances. We found that a high percentage of captured individuals were assigned at short distances within the natal population, and males were assigned to the natal population more often than females, confirming sex-biased dispersal. Parentage-based dispersal estimates averaged 2400m, whereas gene dispersal estimates indicated dispersal distances ranging from 1600-4200 m. Our study was successful in quantifying natal dispersal distances, linking individual movement to gene dispersal distances, while also providing a detailed look into the dispersal biology of Neotropical passerines. The high-resolution information was obtained with much reduced effort (sampling only 20% of breeding population) compared to mark-resight approaches, demonstrating the potential applicability of parentage-based approaches for quantifying dispersal in other vagile passerine species.

  16. Application of Graph Theory to the elaboration of personal genomic data for genealogical research

    Directory of Open Access Journals (Sweden)

    Vincenzo Palleschi

    2015-10-01

    Full Text Available In this communication a representation of the links between DNA-relatives based on Graph Theory is applied to the analysis of personal genomic data to obtain genealogical information. The method is tested on both simulated and real data and its applicability to the field of genealogical research is discussed. We envisage the proposed approach as a valid tool for a streamlined application to the publicly available data generated by many online personal genomic companies. In this way, anonymized matrices of pairwise genome sharing counts can help to improve the retrieval of genetic relationships between customers who provide explicit consent to the treatment of their data.

  17. Gene expression profiling for human iPS-derived motor neurons from sporadic ALS patients reveals a strong association between mitochondrial functions and neurodegeneration

    Directory of Open Access Journals (Sweden)

    Chrystian Junqueira Alves

    2015-08-01

    Full Text Available Amyotrophic Lateral Sclerosis (ALS is a fatal neurodegenerative disease that leads to widespread motor neuron death, general palsy and respiratory failure. The most prevalent sporadic ALS form is not genetically inherited. Attempts to translate therapeutic strategies have failed because the described mechanisms of disease are based on animal models carrying specific gene mutations and thus do not address sporadic ALS. In order to achieve a better approach to study the human disease, human induced pluripotent stem cell (hiPSC-differentiated motor neurons were obtained from motor nerve fibroblasts of sporadic ALS and non-ALS subjects using the STEMCCA Cre-Excisable Constitutive Polycistronic Lentivirus system and submitted to microarray analyses using a whole human genome platform. DAVID analyses of differentially expressed genes identified molecular function and biological process-related genes through Gene Ontology. REVIGO highlighted the related functions mRNA and DNA binding, GTP binding, transcription (co-repressor activity, lipoprotein receptor binding, synapse organization, intracellular transport, mitotic cell cycle and cell death. KEGG showed pathways associated with Parkinson’s disease and oxidative phosphorylation, highlighting iron homeostasis, neurotrophic functions, endosomal trafficking and ERK signaling. The analysis of most dysregulated genes and those representative of the majority of categorized genes indicates a strong association between mitochondrial function and cellular processes possibly related to motor neuron degeneration. In conclusion, iPSC-derived motor neurons from motor nerve fibroblasts of sporadic ALS patients may recapitulate key mechanisms of neurodegeneration and may offer an opportunity for translational investigation of sporadic ALS. Large gene profiling of differentiated motor neurons from sporadic ALS patients highlights mitochondrial participation in the establishment of autonomous mechanisms associated

  18. The genealogy and genetic viability of reintroduced Yellowstone grey wolves.

    Science.gov (United States)

    Vonholdt, Bridgett M; Stahler, Daniel R; Smith, Douglas W; Earl, Dent A; Pollinger, John P; Wayne, Robert K

    2008-01-01

    The recovery of the grey wolf in Yellowstone National Park is an outstanding example of a successful reintroduction. A general question concerning reintroduction is the degree to which genetic variation has been preserved and the specific behavioural mechanisms that enhance the preservation of genetic diversity and reduce inbreeding. We have analysed 200 Yellowstone wolves, including all 31 founders, for variation in 26 microsatellite loci over the 10-year reintroduction period (1995-2004). The population maintained high levels of variation (1995 H(0) = 0.69; 2004 H(0) = 0.73) with low levels of inbreeding (1995 F(IS) = -0.063; 2004 F(IS) = -0.051) and throughout, the population expanded rapidly (N(1995) = 21; N(2004) = 169). Pedigree-based effective population size ratios did not vary appreciably over the duration of population expansion (1995 N(e)/N(g) = 0.29; 2000 N(e)/N(g) = 0.26; 2004 N(e)/N(g) = 0.33). We estimated kinship and found only two of 30 natural breeding pairs showed evidence of being related (average r = -0.026, SE = 0.03). We reconstructed the genealogy of 200 wolves based on genetic and field data and discovered that they avoid inbreeding through a wide variety of behavioural mechanisms including absolute avoidance of breeding with related pack members, male-biased dispersal to packs where they breed with nonrelatives, and female-biased subordinate breeding. We documented a greater diversity of such population assembly patterns in Yellowstone than previously observed in any other natural wolf population. Inbreeding avoidance is nearly absolute despite the high probability of within-pack inbreeding opportunities and extensive interpack kinship ties between adjacent packs. Simulations showed that the Yellowstone population has levels of genetic variation similar to that of a population managed for high variation and low inbreeding, and greater than that expected for random breeding within packs or across the entire breeding pool. Although short

  19. Strong inhibition of fimbrial 3 subunit gene transcription by a novel downstream repressive element in Bordetella pertussis.

    Science.gov (United States)

    Chen, Qing; Boulanger, Alice; Hinton, Deborah M; Stibitz, Scott

    2014-08-01

    The Bvg-regulated promoters for the fimbrial subunit genes fim2 and fim3 of Bordetella pertussis behave differently from each other both in vivo and in vitro. In vivo Pfim2 is significantly stronger than Pfim3 , even though predictions based on the DNA sequences of BvgA-binding motifs and core promoter elements would indicate the opposite. In vitro Pfim3 demonstrated robust BvgA∼P-dependent transcriptional activation, while none was seen with Pfim2 . This apparent contradiction was investigated further. By swapping sequence elements we created a number of hybrid promoters and assayed their strength in vivo. We found that, while Pfim3 promoter elements upstream of the +1 transcriptional start site do indeed direct Bvg-activated transcription more efficiently than those of Pfim2 , the overall promoter strength of Pfim3  in vivo is reduced due to sequences downstream of +1 that inhibit transcription more than 250-fold. This element, the DRE (downstream repressive element), was mapped to the 15 bp immediately downstream of the Pfim3 +1. Placing the DRE in different promoter contexts indicated that its activity was not specific to fim promoters, or even to Bvg-regulated promoters. However it does appear to be specific to Bordetella species in that it did not function in Escherichia coli.

  20. 浅析东北地区满族家谱%Analysis of Northeast Manchu Genealogy

    Institute of Scientific and Technical Information of China (English)

    李佳佳; 徐晓东

    2014-01-01

    The Manchu , as one of the northeast minority nationalities in China, had entered into the central plains for hundreds of years . After Qing's extinction , Manchu was on the wane . The Manchu genealogy recorded the history of the Manchu had been reserved And its information transformed from easy to complex , part of genealogy contains hereditary charts only . By analyzing the content of Manchu ge-nealogy , this paper expounds that the Manchu genealogy had been sinicized and keep their own characters .%满族作为我国东北地区少数民族之一,在历史上曾经入主中原数百年,随着清朝灭亡,满族逐渐出现衰落。记录满族历史的满族经过数百年的传承存留下来。满族家谱自身承载信息量由简入繁,部分谱中只有世袭图表。从满族家谱记载财产、人员简介、世袭更替以及满族特色的祭祀等内容,可以看出满族家谱有被汉化的迹象同时也保持本民族特色。

  1. The Genealogy Project: Tracing Academic Roots in the History and Systems Course.

    Science.gov (United States)

    Goodwin, C. James; Dingus, Michelle; Petterson, Stephanie

    2002-01-01

    Describes an assignment in a history and systems of psychology course where students traced the genealogy of psychologists in terms of their academic roots. Explains that the students learned about bibliographic resources during the project. Discusses assignment outcomes as discovered through a student survey. (CMK)

  2. Human Diversity and the Genealogy of Languages: Noah as the Founding Ancestor of the Chinese

    Science.gov (United States)

    Hutton, Christopher

    2008-01-01

    The characteristics which were held to define the Chinese language within the Western intellectual tradition placed it for a time at the centre in discussions of the genealogy of mankind. The dominant premodern paradigm for the explanation of human linguistic diversity was Biblical exegesis, as discussed and elaborated within the framework of…

  3. A Genealogy of the "Future": Antipodean Trajectories and Travels of the "21st Century Learner"

    Science.gov (United States)

    Williams, Carolyn; Gannon, Susanne; Sawyer, Wayne

    2013-01-01

    In this paper, from the particular positioning of educational researchers working in Australia, we unpack the figure of the "21st century learner" from both broad and specific perspectives. The paper begins with a policy genealogy that traces this figure through networks of documents, events and bodies that transcend borders and…

  4. Towards a complete North American Anabaptist Genealogy II: analysis of inbreeding.

    Science.gov (United States)

    Agarwala, R; Schäffer, A A; Tomlin, J F

    2001-08-01

    We describe a large genealogy data base, which can be searched by computer, of 295,095 Amish and Mennonite individuals. The data base was constructed by merging our existing Anabaptist Genealogy Database 2.0 containing approximately 85,000 individuals with a genealogy file containing approximately 242,000 individuals, kindly provided by Mr. James Hostetler. The merging process corrected thousands of inconsistencies and eliminated hundreds of duplicate individuals. Geneticists have long been interested in Anabaptist populations because they are closed and have detailed written genealogies. The creation of an enlarged and unified data base affords the opportunity to examine inbreeding trends and correlates in these populations. We show the following results. The frequency of consanguineous marriages shows steady increase over time and reached approximately 85% for individuals born in 1940-1959. Among consanguineous marriages, the median kinship coefficient stayed stable in the 19th century, but rose from 0.0115 to 0.0151 in the 20th century. There are statistically significant associations (p < 0.0001) between inbreeding and family size and interbirth intervals in the 20th century. There is an association (p < 0.0005) between inbreeding and early death for individuals born in 1920-1959. However, this association reverses dramatically (p < 0.0005 in the opposite direction) for individuals born in 1960-1979. We tested for an association between inbreeding and being the mother of twins, but found none.

  5. Genealogy, morphology and fitness of spontaneous hybrids between wild and cultivated chicory (Cichorium intybus)

    DEFF Research Database (Denmark)

    Kiær, Lars Pødenphant; Philipp, M.; Bagger Jørgensen, Rikke

    2007-01-01

    Crop species are known to hybridize spontaneously with wild relatives, but few studies have characterized the performance of hybrids at various genealogies, life stages and environments. A group of cultivar-like individuals and potential hybrids were observed in a roadside population of wild chic...

  6. Frozen Landscapes: A Foucauldian Genealogy of the Ideal Ballet Dancer's Body

    Science.gov (United States)

    Ritenburg, Heather Margaret

    2010-01-01

    This paper explores the social construction of the "ideal" body of the female ballet dancer in North America. Specifically, the author constructs a Foucauldian genealogy tracing a body shape that came to dominate the principal female dancers of the New York City Ballet, and how this body shape continues to be normalized through…

  7. A web-based family health record supporting genealogical clinical anamnesis.

    Science.gov (United States)

    Andreoni, Matteo; Beretta, Diego; Carzaniga, Antonio; Masseroli, Marco

    2007-10-11

    We developed "Family Pathology", a Web-based system that allows recording and evaluating the clinical data of a patient and his/her relatives. The goal is to enable a physician to identify not only an occurred disease and the prescribed medications, but also its possible recurrence within the patients family in order to highlight possible genealogical pathologies and risk factors.

  8. TSHR Gene Polymorphisms in the Enhancer Regions Are Most Strongly Associated with the Development of Graves' Disease, Especially Intractable Disease, and of Hashimoto's Disease.

    Science.gov (United States)

    Fujii, Asami; Inoue, Naoya; Watanabe, Mikio; Kawakami, Chisa; Hidaka, Yoh; Hayashizaki, Yoshihide; Iwatani, Yoshinori

    2017-01-01

    Graves' disease (GD) and Hashimoto's disease (HD) are autoimmune thyroid disorders distinguished by the presence or absence of antithyrotropin receptor (TSHR) antibodies (TRAb). TSHR gene polymorphisms determine the amount of TSHR expressed, which may in turn influence TRAb production. The FANTOM5 project identified six GD-associated single nucleotide polymorphisms (SNPs) within the enhancer regions of the TSHR and unknown genes. This study examined the association of 11 TSHR and unknown gene polymorphisms, five of which are located in TSHR enhancer regions, with the development and prognosis of GD and HD. SNPs of the TSHR and unknown genes were genotyped in 180 GD patients, including 62 patients with intractable GD and 48 patients with GD in remission; 151 HD patients, including 65 patients with severe HD and 40 patients with mild HD; and 111 healthy controls. The rs4411444 GG genotype and G allele, the rs2300519 AA genotype, and the rs179247 AA genotype and A allele were more frequent in GD patients than they were in controls. These same genotypes and alleles, in addition to the rs2300519 A allele and rs4903961 GG genotype and G allele, were more frequent in patients with intractable GD than they were in controls and patients with GD in remission. Interestingly, the rs2300519 TT genotype and T allele, rs4903961 CC genotype and C allele, and rs179247 GG genotype, all of which are minor genotypes and alleles among the evaluated SNPs, were more frequent in HD patients than they were in controls, but there were no differences in the frequencies of these genotypes and alleles between patients with severe HD and mild HD. Among the evaluated SNPs, the rs4411444 GG genotype and the rs4903961 C allele in the enhancer regions of the TSHR gene were most strongly associated with the development of GD, especially intractable disease, and that of HD, respectively. Among the evaluated TSHR gene SNPs, the rs4411444 GG genotype and the rs4903961 C allele in the enhancer regions

  9. Strong decoherence

    CERN Document Server

    Gell-Mann, Murray; Gell-Mann, Murray; Hartle, James B

    1997-01-01

    We introduce a condition for the strong decoherence of a set of alternative histories of a closed quantum-mechanical system such as the universe. The condition applies, for a pure initial state, to sets of homogeneous histories that are chains of projections, generally branch-dependent. Strong decoherence implies the consistency of probability sum rules but not every set of consistent or even medium decoherent histories is strongly decoherent. Two conditions characterize a strongly decoherent set of histories: (1) At any time the operators that effectively commute with generalized records of history up to that moment provide the pool from which --- with suitable adjustment for elapsed time --- the chains of projections extending history to the future may be drawn. (2) Under the adjustment process, generalized record operators acting on the initial state of the universe are approximately unchanged. This expresses the permanence of generalized records. The strong decoherence conditions (1) and (2) guarantee wha...

  10. Classic Pars Planitis: strong correlation of class II genes with gender and some clinical features in Mexican Mestizos.

    Science.gov (United States)

    Alaez, Carmen; Arellanes, Lourdes; Vazquez, Alejandra; Flores, Hilario; Navarro, Patricia; Vazquez-García, Miriam; Gorodezky, Clara

    2003-10-01

    The purpose of this study was the investigation of human leukocyte antigen (HLA) genes in Mexicans with classical Pars Planitis (CPP). Seventy-nine unrelated patients and 204 healthy controls were studied. HLA-A, -B, and -C typing was done on T cells isolated with immunomagnetic beads. HLA-DRB1, -DQA1, and -DQB1 loci were typed by polymerase chain reaction-sequence-specific oligonucleotide probes. The significance and strength of HLA associations were assessed. Stratification analyses were performed to analyze correlations between HLA alleles and clinical manifestations or gender. The mean age of CPP patients was 10 years old. The disease was recurrent (21.3%); 58% were males and 89.6% were bilaterally affected. A 3-year follow-up demonstrated no other associated disease. DRB1*0802 was significantly increased (odds ratio [OR] = 2.8, etiologic fraction [EF] = 18.96%). In females, HLA-B51 (OR = 9.8) was associated with nonsymmetrical onset and HLA-Cw1 (OR = 4.7) with symmetrical onset; DRB1*0802 was increased in males (OR = 3.9, p =5.0 E-05, EF = 38.3%) and contributed to their symmetrical onset (OR = 4.6, p =4.6 E-06, EF = 29.4%). Corneal peripheral endotheliopathy correlated with DQB1*0602 in females (OR = 17, EF = 47.1%). A susceptibility allele of Amerindian ancestry is responsible for juvenile CPP in Mexicans; HLA-B locus contributes to severity in females and DRB1*0802 in males. CPP should be classified as an heterogeneous illness taking into account ethnicity, and clinical and genetic characteristics.

  11. Protection from Severe Influenza Virus Infections in Mice Carrying the Mx1 Influenza Virus Resistance Gene Strongly Depends on Genetic Background.

    OpenAIRE

    2015-01-01

    ABSTRACT Influenza virus infections represent a serious threat to human health. Both extrinsic and intrinsic factors determine the severity of influenza. The MX dynamin-like GTPase 1 (Mx1) gene has been shown to confer strong resistance to influenza A virus infections in mice. Most laboratory mouse strains, including C57BL/6J, carry nonsense or deletion mutations in Mx1 and thus a nonfunctional allele, whereas wild-derived mouse strains carry a wild-type Mx1 allele. Congenic C57BL/6J (B6-Mx1 ...

  12. Exploring the 5'-UTR DNA region as a target for optimizing recombinant gene expression from the strong and inducible Pm promoter in Escherichia coli.

    Science.gov (United States)

    Berg, Laila; Kucharova, Veronika; Bakke, Ingrid; Valla, Svein; Brautaset, Trygve

    2012-04-30

    By using the strong and inducible Pm promoter as a model, we recently reported that the β-lactamase production (encoded by bla) can be stimulated up to 20-fold in Escherichia coli by mutating the DNA region corresponding to the 5'-untranslated region of mRNA (UTR). One striking observation was the unexpected large stimulatory effect some of these UTR variants had on the bla transcript production level. We here demonstrate that such UTR variants can also be used to improve the expression level of the alternative genes celB (encoding phosphoglucomutase) and inf-α2b (encoding human cytokine interferon α2b), which both can be expressed to high levels even with the wild-type Pm UTR DNA sequence. Our data indicated some degree of context dependency between the UTR DNA and concomitant recombinant gene sequences. By constructing and using a synthetic operon, we demonstrated that UTR variants optimized for high-level expression of probably any recombinant gene can be efficiently selected from large UTR mutant libraries. The stimulation affected both the transcript production and translational level, and such modified UTR sequences therefore clearly have a significant applied potential for improvement of recombinant gene expression processes.

  13. Adaptation to a seasonally varying environment: a strong latitudinal cline in reproductive diapause combined with high gene flow in Drosophila montana

    Science.gov (United States)

    Tyukmaeva, Venera I; Salminen, Tiina S; Kankare, Maaria; Knott, K Emily; Hoikkala, Anneli

    2011-01-01

    Adaptation to seasonal changes in the northern hemisphere includes an ability to predict the forthcoming cold season from gradual changes in environmental cues early enough to prepare for the harsh winter conditions. The magnitude and speed of changes in these cues vary between the latitudes, which induces strong selection pressures for local adaptation. We studied adaptation to seasonal changes in Drosophila montana, a northern maltfly, by defining the photoperiodic conditions leading to adult reproductive diapause along a latitudinal cline in Finland and by measuring genetic differentiation and the amount of gene flow between the sampling sites with microsatellites. Our data revealed a clear correlation between the latitude and the critical day length (CDL), in which half of the females of different cline populations enter photoperiodic reproductive diapause. There was no sign of limited gene flow between the cline populations, even though these populations showed isolation by distance. Our results show that local adaptation may occur even in the presence of high gene flow, when selection for locally adaptive life-history traits is strong. A wide range of variation in the CDLs of the fly strains within and between the cline populations may be partly due to gene flow and partly due to the opposing selection pressures for fly reproduction and overwinter survival. This variation in the timing of diapause will enhance populations’ survival over the years that differ in the severity of the winter and in the length of the warm period and may also help them respond to long-term changes in environmental conditions. PMID:22393492

  14. Strong genome-wide selection early in the evolution of Prochlorococcus resulted in a reduced genome through the loss of a large number of small effect genes.

    Directory of Open Access Journals (Sweden)

    Zhiyi Sun

    Full Text Available The smallest genomes of any photosynthetic organisms are found in a group of free-living marine cyanobacteria, Prochlorococcus. To determine the underlying evolutionary mechanisms, we developed a new method to reconstruct the steps leading to the Prochlorococcus genome reduction using 12 Prochlorococcus and 6 marine Synechococcus genomes. Our results reveal that small genome sizes within Prochlorococcus were largely determined shortly after the split of Prochlorococcus and Synechococcus (an early big shrink and thus for the first time decouple the genome reduction from Prochlorococcus diversification. A maximum likelihood approach was then used to estimate changes of nucleotide substitution rate and selection strength along Prochlorococcus evolution in a phylogenetic framework. Strong genome wide purifying selection was associated with the loss of many genes in the early evolutionary stage. The deleted genes were distributed around the genome, participated in many different functional categories and in general had been under relaxed selection pressure. We propose that shortly after Prochlorococcus diverged from its common ancestor with marine Synechococcus, its population size increased quickly thus increasing efficacy of selection. Due to limited nutrients and a relatively constant environment, selection favored a streamlined genome for maximum economy. Strong genome wide selection subsequently caused the loss of genes with small functional effect including the loss of some DNA repair genes. In summary, genome reduction in Prochlorococcus resulted in genome features that are similar to symbiotic bacteria and pathogens, however, the small genome sizes resulted from an increase in genome wide selection rather than a consequence of a reduced ecological niche or relaxed selection due to genetic drift.

  15. As origens do judô brasileiro: a árvore genealógica dos medalhistas olímpicos Las orígenes del judo brasileño: el árbol genealogica de los ganadores de medallas olímpicas The roots of Brazilian judo, the genealogic tree from olympic medalists

    Directory of Open Access Journals (Sweden)

    Alexandre Velly Nunes

    2012-12-01

    atletas y entrenadores.Brazil has participated in all editions of the Olympic Games (OG in Judo, and 12 Brazilian athletes were medalists. The goal of the present study is to prepare a Judo genealogical tree from the Brazilian Judo of those medalists. The methodology used was the oral history of life hybrid. The 12 Brazilian Judo medalists and their coaches were interviewed. After identified all of the former coaches from those medalists, we were able to find the genearches, those who came into Brazil with the possibility to transmit these knowledge. The answers obtained from the respondents were analyzed together with other documents. Maeda and Satake were the first ones to arrive in Brazil and began the demonstrations, in 1914. Ryuzo Ogawa, who found Budokan in 1936, was the genearch who influenced the highest number of those athletes. The first Brazilian medalist, Chiaki Ishii, was a genearch as well, since he influenced other athletes and coaches.

  16. Genealogical analysis as a new approach for the investigation of drug intolerance heritability.

    Science.gov (United States)

    Tremblay, Marc; Bouhali, Tarek; Gaudet, Daniel; Brisson, Diane

    2014-07-01

    Genealogical analysis has proven a useful method to understand the origins and frequencies of hereditary diseases in many populations. However, this type of analysis has not yet been used for the investigation of drug intolerance among patients suffering from inherited disorders. This study aims to do so, using data from familial hypercholesterolemia (FH) patients receiving high doses of statins. The objective is to measure and compare various genealogical parameters that could shed light on the origins and heritability of muscular intolerance to statins using FH as a model. Analysis was performed on 224 genealogies from 112 FH subjects carrying either the low-density lipoprotein receptor (LDLR) prom_e1 deletion>15 kb (n=28) or c.259T>G (p.Trp87Gly) (n=84) mutations and 112 non-FH controls. Number of ancestors, geographical origins and genetic contribution of founders, inbreeding and kinship coefficients were calculated using the S-Plus-based GENLIB software package. For both mutations, repeated occurrences of the same ancestors are more frequent among the carriers' genealogies than among the controls', but no difference was observed between tolerant and intolerant subjects. Founders who may have introduced both mutations in the population appear with approximately the same frequencies in all genealogies. Kinship coefficients are higher among carriers, with no difference according to statins tolerance. Inbreeding coefficients are slightly lower among >15-kb deletion carriers than among c.259 T>G carriers, but the differences between tolerants and intolerants are not significant. These findings suggest that although muscular intolerance to statins shows a family aggregation, it is not transmitted through the same Mendelian pattern as LDLR mutations.

  17. Strong Force

    CERN Document Server

    Without the strong force, there could be no life. The carbon in living matter is synthesised in stars via the strong force. Lighter atomic nuclei become bound together in a process called nuclear fusion. A minor change in this interaction would make life impossible. As its name suggests, the strong force is the most powerful of the 4 forces, yet its sphere of influence is limited to within the atomic nucleus. Indeed it is the strong force that holds together the quarks inside the positively charged protons. Without this glue, the quarks would fly apart repulsed by electromagnetism. In fact, it is impossible to separate 2 quarks : so much energy is needed, that a second pair of quarks is produced. Text for the interactive: Can you pull apart the quarks inside a proton?

  18. Identification, genealogical structure and population genetics of S-alleles in Malus sieversii, the wild ancestor of domesticated apple.

    Science.gov (United States)

    Ma, X; Cai, Z; Liu, W; Ge, S; Tang, L

    2017-09-01

    The self-incompatibility (SI) gene that is specifically expressed in pistils encodes the SI-associated ribonuclease (S-RNase), functioning as the female-specificity determinant of a gametophytic SI system. Despite extensive surveys in Malus domestica, the S-alleles have not been fully investigated for Malus sieversii, the primary wild ancestor of the domesticated apple. Here we screened the M. sieversii S-alleles via PCR amplification and sequencing, and identified 14 distinct alleles in this species. By contrast, nearly 40 are present in its close wild relative, Malus sylvestris. We further sequenced 8 nuclear genes to provide a neutral reference, and investigated the evolution of S-alleles via genealogical and population genetic analyses. Both shared ancestral polymorphism and an excess of non-synonymous substitution were detected in the S-RNases of the tribe Maleae in Rosaceae, indicating the action of long-term balancing selection. Approximate Bayesian Computations based on the reference neutral loci revealed a severe bottleneck in four of the six studied M. sieversii populations, suggesting that the low number of S-alleles found in this species is mainly the result of diversity loss due to a drastic population contraction. Such a bottleneck may lead to ambiguous footprints of ongoing balancing selection detected at the S-locus. This study not only elucidates the constituents and number of S-alleles in M. sieversii but also illustrates the potential utility of S-allele number shifts in demographic inference for self-incompatible plant species.

  19. Strong combined gene-environment effects in anti-cyclic citrullinated peptide-positive rheumatoid arthritis: a nationwide case-control study in Denmark.

    Science.gov (United States)

    Pedersen, Merete; Jacobsen, Søren; Garred, Peter; Madsen, Hans O; Klarlund, Mette; Svejgaard, Arne; Pedersen, Bo V; Wohlfahrt, Jan; Frisch, Morten

    2007-05-01

    To study the role of shared epitope (SE) susceptibility genes, alone and in combination with tobacco smoking and other environmental risk factors, for risk of subtypes of rheumatoid arthritis (RA) defined by the presence or absence of serum antibodies against cyclic citrullinated peptides (CCPs). To address these issues, a nationwide case-control study was conducted in Denmark during 2002-2004, comprising incident cases of RA or patients with recently diagnosed RA (309 seropositive and 136 seronegative for IgG antibodies against CCP) and 533 sex- and age-matched population controls. Associations were evaluated by logistic regression analyses, in which odds ratios (ORs) served as measures of relative risk. Compared with individuals without SE susceptibility genes, SE homozygotes had an elevated risk of anti-CCP-positive RA (OR 17.8, 95% confidence interval [95% CI] 10.8-29.4) but not anti-CCP-negative RA (OR 1.07, 95% CI 0.53-2.18). Strong combined gene-environment effects were observed, with markedly increased risks of anti-CCP-positive RA in SE homozygotes who were heavy smokers (OR 52.6, 95% CI 18.0-154), heavy coffee drinkers (OR 53.3, 95% CI 15.5-183), or oral contraceptive users (OR 44.6, 95% CI 15.2-131) compared with SE noncarriers who were not exposed to these environmental risk factors. Persons who are homozygous for SE susceptibility genes, notably those who are also exposed to environmental risk factors, have a markedly and selectively increased risk of anti-CCP-positive RA. A distinction between anti-CCP-positive RA and anti-CCP-negative RA seems warranted, because these RA subtypes most likely represent etiologically distinct disease entities.

  20. Genetic genealogy comes of age: perspectives on the use of deep-rooted pedigrees in human population genetics.

    Science.gov (United States)

    Larmuseau, M H D; Van Geystelen, A; van Oven, M; Decorte, R

    2013-04-01

    In this article, we promote the implementation of extensive genealogical data in population genetic studies. Genealogical records can provide valuable information on the origin of DNA donors in a population genetic study, going beyond the commonly collected data such as residence, birthplace, language, and self-reported ethnicity. Recent studies demonstrated that extended genealogical data added to surname analysis can be crucial to detect signals of (past) population stratification and to interpret the population structure in a more objective manner. Moreover, when in-depth pedigree data are combined with haploid markers, it is even possible to disentangle signals of temporal differentiation within a population genetic structure during the last centuries. Obtaining genealogical data for all DNA donors in a population genetic study is a labor-intensive task but the vastly growing (genetic) genealogical databases, due to the broad interest of the public, are making this job more time-efficient if there is a guarantee for sufficient data quality. At the end, we discuss the advantages and pitfalls of using genealogy within sampling campaigns and we provide guidelines for future population genetic studies.

  1. Estimation of genealogical coancestry in plant species using a pedigree reconstruction algorithm and application to an oil palm breeding population.

    Science.gov (United States)

    Cros, David; Sánchez, Leopoldo; Cochard, Benoit; Samper, Patrick; Denis, Marie; Bouvet, Jean-Marc; Fernández, Jesús

    2014-04-01

    Explicit pedigree reconstruction by simulated annealing gave reliable estimates of genealogical coancestry in plant species, especially when selfing rate was lower than 0.6, using a realistic number of markers. Genealogical coancestry information is crucial in plant breeding to estimate genetic parameters and breeding values. The approach of Fernández and Toro (Mol Ecol 15:1657-1667, 2006) to estimate genealogical coancestries from molecular data through pedigree reconstruction was limited to species with separate sexes. In this study it was extended to plants, allowing hermaphroditism and monoecy, with possible selfing. Moreover, some improvements were made to take previous knowledge on the population demographic history into account. The new method was validated using simulated and real datasets. Simulations showed that accuracy of estimates was high with 30 microsatellites, with the best results obtained for selfing rates below 0.6. In these conditions, the root mean square error (RMSE) between the true and estimated genealogical coancestry was small (0.9) and a low RMSE (pedigree data were scarce. The estimated genealogical coancestries were highly correlated (>0.9) with the molecular coancestries using 100 markers. Reconstructed pedigrees were used to estimate effective population sizes. In conclusion, this method gave reliable genealogical coancestry estimates. The strategy was implemented in the software MOLCOANC 3.0.

  2. The MsPRP2 promoter enables strong heterologous gene expression in a root-specific manner and is enhanced by overexpression of Alfin 1.

    Science.gov (United States)

    Winicov, Ilga; Valliyodan, Babu; Xue, Lingru; Hoober, J Kenneth

    2004-10-01

    Promoter specificity and efficiency of utilization are essential for endogenous and transgene expression. Selective root expression remains to be defined in terms of both promoter elements and transcription factors that provide high levels of ubiquitous expression. We characterized expression from the MsPRP2 promoter with the green fluorescent protein (GFP) reporter transgene in alfalfa (Medicago sativa) and found that a promoter fragment (+1 to -652 bp) retained the root and callus specificity of the endogenous MsPRP2 gene and hence this promoter fragment contains elements necessary for root-specific expression. The strong ubiquitous expression obtained from this promoter was comparable to that of the CaMV 35S promoter in roots and was enhanced by transgenic overexpression of Alfin 1, a root- and callus-specific transcription factor in alfalfa. No transgenic expression was obtained in leaves with this promoter in the presence or absence of Alfin 1. The increased expression of GFP in alfalfa containing the Alfin 1 transgene confirms the function of Alfin 1 binding sites in the MsPRP2 promoter fragment and also indicates that Alfin 1 concentrations are limiting for maximal expression in calli and roots. These findings characterize the MsPRP2 promoter as a novel root- and callus-specific promoter of plant origin that can be used as an effective tool for strong root-directed gene expression. In addition, we have demonstrated that the signal sequence of MsPRP2 can be used for efficient secretion of transgene products from callus and roots.

  3. Using mitochondrial nucleotide sequences to investigate diversity and genealogical relationships within common carp (Cyprinus carpio L.).

    Science.gov (United States)

    Thai, B T; Burridge, C P; Pham, T A; Austin, C M

    2005-02-01

    Direct sequencing of mitochondrial DNA (mtDNA) D-loop (745 bp) and MTATPase6/MTATPase8 (857 bp) regions was used to investigate genetic variation within common carp and develop a global genealogy of common carp strains. The D-loop region was more variable than the MTATPase6/MTATPase8 region, but given the wide distribution of carp the overall levels of sequence divergence were low. Levels of haplotype diversity varied widely among countries with Chinese, Indonesian and Vietnamese carp showing the greatest diversity whereas Japanese Koi and European carp had undetectable nucleotide variation. A genealogical analysis supports a close relationship between Vietnamese, Koi and Chinese Color carp strains and to a lesser extent, European carp. Chinese and Indonesian carp strains were the most divergent, and their relationships do not support the evolution of independent Asian and European lineages and current taxonomic treatments.

  4. Research of Majia hala Manchu Genealogy%马佳氏满文家谱研究

    Institute of Scientific and Technical Information of China (English)

    韩晓梅

    2011-01-01

    Being first hand material for researching history of Majia hala, the newly discovered Majia hala Manchu genealogy in Shuangcheng City is precious source, which recorded population reproduction and lineage distribution of Majia hala wugua branch. The historical material, language and cultural information contained in Majia hala genealogy have significant value to research.%新发现的双城满族马佳氏满文家谱是记载马佳氏乌瓜一支人口繁衍、世系分布的宝贵资料,是研究马佳氏历史的第一手材料,其中蕴含的大量历史资料和语言文化信息,具有重要的研究价值。

  5. Genealogi dan Transformasi Ideologi Partai berbasis Islam di Indonesia Pasca Orde Baru

    Directory of Open Access Journals (Sweden)

    M Faishal Aminuddin

    2016-08-01

    Full Text Available Study of political Islam did not paid attention to observing the patterns of thought and its transformation in political organization. Even though some studies conducted and brought analysis with case study against specific in their respective political parties. This article departs from the question of how the genealogy of political Islam thought and how it transformed into Islamic-base political parties in democratic Indonesia? The unit of analysis of this study is Islamic-based parties, having a main support base from Islamic religious organizations and had seat in parliament since 1999 election. This study reveals an important finding that Islamic-based parties had been undertakes adaptation and transforming political Islam doctrinaire with more flexible. This is proven through the tracing of consistency between values, platform and the party's work program either in parliament or the public. This study combines historical discursive approach and genealogy as an analytical framework.

  6. Genealogy and Subjectivity: An Incoherent Foucault (A Response to Calvert-Minor

    Directory of Open Access Journals (Sweden)

    Brian Lightbody

    2010-06-01

    Full Text Available The essay “Archaeology and Humanism: An Incongruent Foucault”argues, among other things, that Foucault “endorses a kind of humanism.” Moreover, Calvert-Minor attempts to show that withoutsuch an endorsement then the curative aspects regarding Foucault’s genealogy of subjectivity would be nonsensical. To be sure, the author seems to demonstrate that there is a clear tension in Foucault’s oeuvre regarding the Frenchman’s changing stance towards, and at times unconscious embracement of, philosophical humanism. Such a claim, if true, would certainly be damaging to Foucault’s archaeological and genealogical projects as he stridently rejected humanism in all of its myriad forms.

  7. Notes for a Genealogy of Dress Codes and Aestheticizing Technologies in the Colombian School

    OpenAIRE

    Alexánder Aldana Bautista

    2016-01-01

    This article shows an analysis of the schoolchild’s construction from a series of aestheticizing technologies that constitute a child’s body in which the aesthetic utopia of modern school is inscribed. The paper, derived from an archaeological–genealogical research about school uniform and dress codes in the Colombian school during the late twentieth century and the early twenty– first century revolves around the following questions: What enabled the emergence of some discourses about school ...

  8. [The importance of genealogy applied to genetic research in Costa Rica].

    Science.gov (United States)

    Meléndez Obando, Mauricio O

    2004-09-01

    The extensive development of genealogical studies based on archival documents has provided powerful support for genetic research in Costa Rica over the past quarter century. As a result, several questions of population history have been answered, such as those involving hereditary illnesses, suggesting additional avenues and questions as well. Similarly, the preservation of massive amounts of historical documentation highlights the major advantages that the Costa Rican population offers to genetic research.

  9. On the genealogy of branching random walks and of directed polymers

    Science.gov (United States)

    Derrida, Bernard; Mottishaw, Peter

    2016-08-01

    It is well known that the mean-field theory of directed polymers in a random medium exhibits replica symmetry breaking with a distribution of overlaps which consists of two delta functions. Here we show that the leading finite-size correction to this distribution of overlaps has a universal character which can be computed explicitly. Our results can also be interpreted as genealogical properties of branching Brownian motion or of branching random walks.

  10. Molecular genealogy tools for white-tailed deer with chronic wasting disease

    OpenAIRE

    Holly B Ernest; Hoar, Bruce R; Well, Jay A.; O’Rourke, Katherine I

    2010-01-01

    Molecular genetic data provide powerful tools for genealogy reconstruction to reveal mechanisms underlying disease ecology. White-tailed deer (Odocoileus virginianus) congregate in matriarchal groups; kin-related close social spacing may be a factor in the spread of infectious diseases. Spread of chronic wasting disease (CWD), a prion disorder of deer and their cervid relatives, is presumed to be associated with direct contact between individuals and by exposure to shared food and water sourc...

  11. Linking Genealogical Research to Library and Information Science : Concepts, Perspectives, Considerations [English Brief Adaptation

    OpenAIRE

    Sant-Geronikolou, Lia

    2011-01-01

    This essay is based on views and conclusions on genealogy and its relation to information sciences as shaped during long years of research inspired by both personal and experiental interest in the advanced study of family descent. It was a real challenge that, in order to become objectively comprehensive, I had to go beyond my personal preferences and practices, to the standards and culture of the best field professionals. It was progressively enriched in the process, along with the recons...

  12. The Mid-Atlantic: Fantasmatic Genealogies of the French and American New Waves

    OpenAIRE

    Haynes, Jonathan Everett

    2014-01-01

    AbstractThe Mid-Atlantic: Fantasmatic Genealogies of the French and American New WavesbyJonathan E. HaynesDoctor of Philosophy in Film & MediaUniversity of California, BerkeleyProfessors Kaja Silverman and Kristen Whissel, Co-ChairsThis dissertation re-imagines the contexts for the paradigmatic film movement of the sixties. The French New Wave, I argue, was made and remade in translation, as texts circulated among French and American scholars, critics, and filmmakers. Subtending this circulat...

  13. Spermine oxidase maintains basal skeletal muscle gene expression and fiber size and is strongly repressed by conditions that cause skeletal muscle atrophy.

    Science.gov (United States)

    Bongers, Kale S; Fox, Daniel K; Kunkel, Steven D; Stebounova, Larissa V; Murry, Daryl J; Pufall, Miles A; Ebert, Scott M; Dyle, Michael C; Bullard, Steven A; Dierdorff, Jason M; Adams, Christopher M

    2015-01-15

    Skeletal muscle atrophy is a common and debilitating condition that remains poorly understood at the molecular level. To better understand the mechanisms of muscle atrophy, we used mouse models to search for a skeletal muscle protein that helps to maintain muscle mass and is specifically lost during muscle atrophy. We discovered that diverse causes of muscle atrophy (limb immobilization, fasting, muscle denervation, and aging) strongly reduced expression of the enzyme spermine oxidase. Importantly, a reduction in spermine oxidase was sufficient to induce muscle fiber atrophy. Conversely, forced expression of spermine oxidase increased muscle fiber size in multiple models of muscle atrophy (immobilization, fasting, and denervation). Interestingly, the reduction of spermine oxidase during muscle atrophy was mediated by p21, a protein that is highly induced during muscle atrophy and actively promotes muscle atrophy. In addition, we found that spermine oxidase decreased skeletal muscle mRNAs that promote muscle atrophy (e.g., myogenin) and increased mRNAs that help to maintain muscle mass (e.g., mitofusin-2). Thus, in healthy skeletal muscle, a relatively low level of p21 permits expression of spermine oxidase, which helps to maintain basal muscle gene expression and fiber size; conversely, during conditions that cause muscle atrophy, p21 expression rises, leading to reduced spermine oxidase expression, disruption of basal muscle gene expression, and muscle fiber atrophy. Collectively, these results identify spermine oxidase as an important positive regulator of muscle gene expression and fiber size, and elucidate p21-mediated repression of spermine oxidase as a key step in the pathogenesis of skeletal muscle atrophy.

  14. Spermine oxidase maintains basal skeletal muscle gene expression and fiber size and is strongly repressed by conditions that cause skeletal muscle atrophy

    Science.gov (United States)

    Bongers, Kale S.; Fox, Daniel K.; Kunkel, Steven D.; Stebounova, Larissa V.; Murry, Daryl J.; Pufall, Miles A.; Ebert, Scott M.; Dyle, Michael C.; Bullard, Steven A.; Dierdorff, Jason M.

    2014-01-01

    Skeletal muscle atrophy is a common and debilitating condition that remains poorly understood at the molecular level. To better understand the mechanisms of muscle atrophy, we used mouse models to search for a skeletal muscle protein that helps to maintain muscle mass and is specifically lost during muscle atrophy. We discovered that diverse causes of muscle atrophy (limb immobilization, fasting, muscle denervation, and aging) strongly reduced expression of the enzyme spermine oxidase. Importantly, a reduction in spermine oxidase was sufficient to induce muscle fiber atrophy. Conversely, forced expression of spermine oxidase increased muscle fiber size in multiple models of muscle atrophy (immobilization, fasting, and denervation). Interestingly, the reduction of spermine oxidase during muscle atrophy was mediated by p21, a protein that is highly induced during muscle atrophy and actively promotes muscle atrophy. In addition, we found that spermine oxidase decreased skeletal muscle mRNAs that promote muscle atrophy (e.g., myogenin) and increased mRNAs that help to maintain muscle mass (e.g., mitofusin-2). Thus, in healthy skeletal muscle, a relatively low level of p21 permits expression of spermine oxidase, which helps to maintain basal muscle gene expression and fiber size; conversely, during conditions that cause muscle atrophy, p21 expression rises, leading to reduced spermine oxidase expression, disruption of basal muscle gene expression, and muscle fiber atrophy. Collectively, these results identify spermine oxidase as an important positive regulator of muscle gene expression and fiber size, and elucidate p21-mediated repression of spermine oxidase as a key step in the pathogenesis of skeletal muscle atrophy. PMID:25406264

  15. <strong>Mini-project>

    DEFF Research Database (Denmark)

    Katajainen, Jyrki

    2008-01-01

    In this project the goal is to develop the safe * family of containers for the CPH STL. The containers to be developed should be safer and more reliable than any of the existing implementations. A special focus should be put on strong exception safety since none of the existing prototypes available...... at the CPH STL can give this guarantee for all operations. In spite of the safety requirements, the strict running-time requirements specified in the C++ standard, and additional requirements specified in the CPH STL design documents, must be fulfilled....

  16. From the horizontal to the vertical genealogical image of the Nemanjić dynasty

    Directory of Open Access Journals (Sweden)

    Vojvodić Dragan

    2007-01-01

    Full Text Available Sometime in the XIV century, towards the end of the second or beginning of the third decade, the 'horizontal genealogical image' of the Serbian rulers gave way to a new depiction of their genealogy. We find the earliest surviving Nemanjić family tree, painted in a vertically arranged composition in the narthex of Gračanica, followed by those in Peć, Dečani, Mateič and Studenica. The appearance of the new type of image presenting the Serbian dynastic genealogy was, on the one hand, due to the problems caused by the ever lengthening series of rulers' portraits. They led to the deformation of the thematic programmes and did not correspond to the dynamic spirit of 'Palaeologan renaissance' art. On the other hand, from the mid-XIII century there was a obvious intention to link the idea of a 'chosen people' and the genealogy of Christ with the Nemanjić dynasty. This process unfolded simultaneously in literature, royal charters and visual art. It was facilitated by the fact that presentations of Christ's genealogy - the Tree of Jesse - were introduced in the programmes of Serbian churches from the second half of the XIII century. A correspondence had already been established between the presentations of Christ's genealogy and the portraits of the Nemanjić family included in the broader thematic ensembles inspired by dynastic ideology, in Sopoćani and, subsequently, in Morača, Arilje and the King's Church in Studenica. Even in the description of the family tree of the Serbian dynasty itself, the notions of 'pious lineage', 'the holy root', 'the branch of good fruit', 'the blessed shoots' etc. were used in the written sources. In this way, a process gradually matured along the path towards creating a dynastic picture of the house of Nemanjić that was iconographically coordinated to the Tree of Jesse. However, the 'vertical' family tree of the Nemanjići was not a simple transposition of the 'horizontal genealogy' into the structure of the new

  17. Strong association of 677 C>T substitution in the MTHFR gene with male infertility--a study on an indian population and a meta-analysis.

    Science.gov (United States)

    Gupta, Nishi; Gupta, Saraswati; Dama, Madhukar; David, Archana; Khanna, Geeta; Khanna, Anil; Rajender, Singh

    2011-01-01

    Methylenetetrahydrofolate reductase (MTHFR) is an important enzyme of folate and methionine metabolism, making it crucial for DNA synthesis and methylation. The objective of this study was to analyze MTHFR gene 677C>T polymorphism in infertile male individuals from North India, followed by a meta-analysis on our data and published studies. We undertook genotyping on a total of 837 individuals including well characterized infertile (N = 522) and confirmed fertile (N = 315) individuals. The SNP was typed by direct DNA sequencing. Chi square test was done for statistical analysis. Published studies were searched using appropriate keywords. Source of data collection for meta-analysis included 'Pubmed', 'Ovid' and 'Google Scholar'. Those studies analyzing 677C>T polymorphism in male infertility and presenting all relevant data were included in meta-analysis. The genotype data for infertile subjects and fertile controls was extracted from each study. Chi square test was done to obtain odds ratio (OR) and p-value. Meta-analysis was performed using Comprehensive Meta-analysis software (Version 2). The frequency of mutant (T) allele (p = 0.0025) and genotypes (CT+TT) (p = 0.0187) was significantly higher in infertile individuals in comparison to fertile controls in our case-control study. The overall summary estimate (OR) for allele and genotype meta-analysis were 1.304 (p = 0.000), 1.310 (p = 0.000), respectively, establishing significant association of 677C>T polymorphism with male infertility. 677C>T substitution associated strongly with male infertility in Indian population. Allele and genotype meta-analysis also supported its strong correlation with male infertility, thus establishing it as a risk factor.

  18. Strong association of 677 C>T substitution in the MTHFR gene with male infertility--a study on an indian population and a meta-analysis.

    Directory of Open Access Journals (Sweden)

    Nishi Gupta

    Full Text Available BACKGROUND: Methylenetetrahydrofolate reductase (MTHFR is an important enzyme of folate and methionine metabolism, making it crucial for DNA synthesis and methylation. The objective of this study was to analyze MTHFR gene 677C>T polymorphism in infertile male individuals from North India, followed by a meta-analysis on our data and published studies. METHODOLOGY/PRINCIPAL FINDINGS: We undertook genotyping on a total of 837 individuals including well characterized infertile (N = 522 and confirmed fertile (N = 315 individuals. The SNP was typed by direct DNA sequencing. Chi square test was done for statistical analysis. Published studies were searched using appropriate keywords. Source of data collection for meta-analysis included 'Pubmed', 'Ovid' and 'Google Scholar'. Those studies analyzing 677C>T polymorphism in male infertility and presenting all relevant data were included in meta-analysis. The genotype data for infertile subjects and fertile controls was extracted from each study. Chi square test was done to obtain odds ratio (OR and p-value. Meta-analysis was performed using Comprehensive Meta-analysis software (Version 2. The frequency of mutant (T allele (p = 0.0025 and genotypes (CT+TT (p = 0.0187 was significantly higher in infertile individuals in comparison to fertile controls in our case-control study. The overall summary estimate (OR for allele and genotype meta-analysis were 1.304 (p = 0.000, 1.310 (p = 0.000, respectively, establishing significant association of 677C>T polymorphism with male infertility. CONCLUSIONS/SIGNIFICANCE: 677C>T substitution associated strongly with male infertility in Indian population. Allele and genotype meta-analysis also supported its strong correlation with male infertility, thus establishing it as a risk factor.

  19. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.

    Science.gov (United States)

    Kristiansson, Kati; Perola, Markus; Tikkanen, Emmi; Kettunen, Johannes; Surakka, Ida; Havulinna, Aki S; Stancáková, Alena; Barnes, Chris; Widen, Elisabeth; Kajantie, Eero; Eriksson, Johan G; Viikari, Jorma; Kähönen, Mika; Lehtimäki, Terho; Raitakari, Olli T; Hartikainen, Anna-Liisa; Ruokonen, Aimo; Pouta, Anneli; Jula, Antti; Kangas, Antti J; Soininen, Pasi; Ala-Korpela, Mika; Männistö, Satu; Jousilahti, Pekka; Bonnycastle, Lori L; Järvelin, Marjo-Riitta; Kuusisto, Johanna; Collins, Francis S; Laakso, Markku; Hurles, Matthew E; Palotie, Aarno; Peltonen, Leena; Ripatti, Samuli; Salomaa, Veikko

    2012-04-01

    Genome-wide association (GWA) studies have identified several susceptibility loci for metabolic syndrome (MetS) component traits, but have had variable success in identifying susceptibility loci to the syndrome as an entity. We conducted a GWA study on MetS and its component traits in 4 Finnish cohorts consisting of 2637 MetS cases and 7927 controls, both free of diabetes, and followed the top loci in an independent sample with transcriptome and nuclear magnetic resonance-based metabonomics data. Furthermore, we tested for loci associated with multiple MetS component traits using factor analysis, and built a genetic risk score for MetS. A previously known lipid locus, APOA1/C3/A4/A5 gene cluster region (SNP rs964184), was associated with MetS in all 4 study samples (P=7.23×10(-9) in meta-analysis). The association was further supported by serum metabolite analysis, where rs964184 was associated with various very low density lipoprotein, triglyceride, and high-density lipoprotein metabolites (P=0.024-1.88×10(-5)). Twenty-two previously identified susceptibility loci for individual MetS component traits were replicated in our GWA and factor analysis. Most of these were associated with lipid phenotypes, and none with 2 or more uncorrelated MetS components. A genetic risk score, calculated as the number of risk alleles in loci associated with individual MetS traits, was strongly associated with MetS status. Our findings suggest that genes from lipid metabolism pathways have the key role in the genetic background of MetS. We found little evidence for pleiotropy linking dyslipidemia and obesity to the other MetS component traits, such as hypertension and glucose intolerance.

  20. Polymorphisms of the dopamine D4 receptor gene (DRD4 VNTR) and cannabinoid CB1 receptor gene (CNR1) are not strongly related to cue-reactivity after alcohol exposure.

    Science.gov (United States)

    van den Wildenberg, Esther; Janssen, Rob G J H; Hutchison, Kent E; van Breukelen, Gerard J P; Wiers, Reinout W

    2007-06-01

    Polymorphisms in the D4 dopamine receptor gene (DRD4) and the CB1 cannabinoid receptor gene (CNR1) have been associated with a differential response to alcohol after consumption. The goal of the present study was to investigate whether heavy drinkers with these polymorphisms would respond with enhanced cue-reactivity after alcohol exposure. Eighty-eight male heavy drinkers were genotyped for the DRD4 variable number of tandem repeats (VNTR) [either DRD4 long (L) or short (S)] and the CNR1 rs2023239 polymorphism (either CT/CC or TT). Participants were exposed to water and beer in 3-minute trials. Dependent variables of main interest were subjective craving for alcohol, subjective arousal and salivary reactivity. Overall, no strong evidence was found for stronger cue-reactivity (= outcome difference between beer and water trial) in the DRD4 L and CNR1 C allele groups. The DRD4 VNTR polymorphism tended to moderate salivary reactivity such that DRD4 L participants showed a larger beverage effect than the DRD4 S participants. Unexpectedly, the DRD4 L participants reported, on average, less craving for alcohol and more subjective arousal during cue exposure, compared with the DRD4 S participants. As weekly alcohol consumption increased, the CNR1 C allele group tended to report more craving for alcohol during the alcohol exposure than the T allele group. The DRD4 and CNR1 polymorphisms do not appear to strongly moderate cue-reactivity after alcohol cue exposure, in male heavy drinkers.

  1. Genetic diversity and molecular genealogy of local silkworm varieties

    Directory of Open Access Journals (Sweden)

    Zhouhe Du

    2013-03-01

    Full Text Available In order to explore the genetic diversity and systematic differentiation pattern among silkworm varieties, aiming to guide hybridization breeding, we sequenced a total of 72 Bmamy2 gene fragments from local silkworm varieties. The analysis of nucleotide sequence diversity and systematic differentiation indicated that there was rich genovariation in the sequencing region of Bmamy2 gene, and the base mutation rate is 5.6–8.2%, the haplotype diversity is 0.8294, and the nucleotide diversity is 0.0236±0.00122, suggesting Bmamy2 being a better marking gene with rich nucleotide sequence diversity, based on which the genetic diversity among different local silkworm varieties can be identified. The same heredity population structure is proclaimed by several analysis methods that every clade consisting of varieties from different geosystems and ecological types, while the varieties from the same geosystem and ecotype belong to different clades in the phylogeny. There is no population structure pattern that different varieties claded together according to geosystem or ecotype. It can be speculated that the silkworm origins from mixture of kinds of several voltinism mulberry silkworm, Bombyx mandarina, while the domestication events took place in several regions, from which the domesticated mulberry silkworms are all devoting to the domesticated silkworm population of today.

  2. Cestrum yellow leaf curling virus (CmYLCV) promoter: a new strong constitutive promoter for heterologous gene expression in a wide variety of crops.

    Science.gov (United States)

    Stavolone, Livia; Kononova, Maria; Pauli, Sandra; Ragozzino, Antonio; de Haan, Peter; Milligan, Steve; Lawton, Kay; Hohn, Thomas

    2003-11-01

    Appropriately regulated gene expression requires a suitable promoter. A number of promoters have been isolated and shown to be functional in plants, but only a few of them activate transcription of transgenes at high levels constitutively. We report here the cloning and characterization of a novel, constitutively expressed promoter isolated from Cestrum yellow leaf curling virus (CmYLCV), a double-stranded DNA plant pararetrovirus belonging to the Caulimoviridae family. The CmYLCV promoter is highly active in callus, meristems and vegetative and reproductive tissues in Arabidopsis thaliana, Nicotiana tabacum, Lycopersicon esculentum, Zea mays and Oryza sativa. Furthermore, the level of expression is comparable to, or higher than, that from the CaMV 35S, the 'super-promoter' or the maize ubiquitin 1 promoters, three frequently used promoters in agricultural biotechnology. The heritable, strong and constitutive activity in both monocotyledonous and dicotyledonous plants, combined with the extremely narrow CmYLCV host range, makes the CmYLCV promoter an attractive tool for regulating transgene expression in a wide variety of plant species.

  3. Flooding impairs Fe uptake and distribution in Citrus due to the strong down-regulation of genes involved in Strategy I responses to Fe deficiency in roots.

    Directory of Open Access Journals (Sweden)

    Mary-Rus Martínez-Cuenca

    Full Text Available This work determines the ffects of long-term anoxia conditions--21 days--on Strategy I responses to iron (Fe deficiency in Citrus and its impact on Fe uptake and distribution. The study was carried out in Citrus aurantium L. seedlings grown under flooding conditions (S and in both the presence (+Fe and absence of Fe (-Fe in nutritive solution. The results revealed a strong down-regulation (more than 65% of genes HA1 and FRO2 coding for enzymes proton-ATPase and Ferric-Chelate Reductase (FC-R, respectively, in -FeS plants when compared with -Fe ones. H+-extrusion and FC-R activity analyses confirmed the genetic results, indicating that flooding stress markedly repressed acidification and reduction responses to Fe deficiency (3.1- and 2.0-fold, respectively. Waterlogging reduced by half Fe concentration in +FeS roots, which led to 30% up-regulation of Fe transporter IRT1, although this effect was unable to improve Fe absorption. Consequently, flooding inhibited 57Fe uptake in +Fe and -Fe seedlings (29.8 and 66.2%, respectively and 57Fe distribution to aerial part (30.6 and 72.3%, respectively. This evidences that the synergistic action of both enzymes H+-ATPase and FC-R is the preferential regulator of the Fe acquisition system under flooding conditions and, hence, their inactivation implies a limiting factor of citrus in their Fe-deficiency tolerance in waterlogged soils.

  4. Temporal differentiation across a West-European Y-chromosomal cline: genealogy as a tool in human population genetics.

    Science.gov (United States)

    Larmuseau, Maarten H D; Ottoni, Claudio; Raeymaekers, Joost A M; Vanderheyden, Nancy; Larmuseau, Hendrik F M; Decorte, Ronny

    2012-04-01

    The pattern of population genetic variation and allele frequencies within a species are unstable and are changing over time according to different evolutionary factors. For humans, it is possible to combine detailed patrilineal genealogical records with deep Y-chromosome (Y-chr) genotyping to disentangle signals of historical population genetic structures because of the exponential increase in genetic genealogical data. To test this approach, we studied the temporal pattern of the 'autochthonous' micro-geographical genetic structure in the region of Brabant in Belgium and the Netherlands (Northwest Europe). Genealogical data of 881 individuals from Northwest Europe were collected, from which 634 family trees showed a residence within Brabant for at least one generation. The Y-chr genetic variation of the 634 participants was investigated using 110 Y-SNPs and 38 Y-STRs and linked to particular locations within Brabant on specific time periods based on genealogical records. Significant temporal variation in the Y-chr distribution was detected through a north-south gradient in the frequencies distribution of sub-haplogroup R1b1b2a1 (R-U106), next to an opposite trend for R1b1b2a2g (R-U152). The gradient on R-U106 faded in time and even became totally invisible during the Industrial Revolution in the first half of the nineteenth century. Therefore, genealogical data for at least 200 years are required to study small-scale 'autochthonous' population structure in Western Europe.

  5. A sugar beet chlorophyll a/b binding protein promoter void of G-box like elements confers strong and leaf specific reporter gene expression in transgenic sugar beet

    Directory of Open Access Journals (Sweden)

    Kloos Dorothee U

    2004-12-01

    Full Text Available Abstract Background Modification of leaf traits in sugar beet requires a strong leaf specific promoter. With such a promoter, expression in taproots can be avoided which may otherwise take away available energy resources for sugar accumulation. Results Suppression Subtractive Hybridization (SSH was utilized to generate an enriched and equalized cDNA library for leaf expressed genes from sugar beet. Fourteen cDNA fragments corresponding to thirteen different genes were isolated. Northern blot analysis indicates the desired tissue specificity of these genes. The promoters for two chlorophyll a/b binding protein genes (Bvcab11 and Bvcab12 were isolated, linked to reporter genes, and transformed into sugar beet using promoter reporter gene fusions. Transient and transgenic analysis indicate that both promoters direct leaf specific gene expression. A bioinformatic analysis revealed that the Bvcab11 promoter is void of G-box like regulatory elements with a palindromic ACGT core sequence. The data indicate that the presence of a G-box element is not a prerequisite for leaf specific and light induced gene expression in sugar beet. Conclusions This work shows that SSH can be successfully employed for the identification and subsequent isolation of tissue specific sugar beet promoters. These promoters are shown to drive strong leaf specific gene expression in transgenic sugar beet. The application of these promoters for expressing resistance improving genes against foliar diseases is discussed.

  6. Genealogy profiling through strain improvement by using metabolic network analysis: metabolic flux genealogy of several generations of lysine-producing corynebacteria.

    Science.gov (United States)

    Wittmann, Christoph; Heinzle, Elmar

    2002-12-01

    A comprehensive approach of metabolite balancing, (13)C tracer studies, gas chromatography-mass spectrometry, matrix-assisted laser desorption ionization-time of flight mass spectrometry, and isotopomer modeling was applied for comparative metabolic network analysis of a genealogy of five successive generations of lysine-producing Corynebacterium glutamicum. The five strains examined (C. glutamicum ATCC 13032, 13287, 21253, 21526, and 21543) were previously obtained by random mutagenesis and selection. Throughout the genealogy, the lysine yield in batch cultures increased markedly from 1.2 to 24.9% relative to the glucose uptake flux. Strain optimization was accompanied by significant changes in intracellular flux distributions. The relative pentose phosphate pathway (PPP) flux successively increased, clearly corresponding to the product yield. Moreover, the anaplerotic net flux increased almost twofold as a consequence of concerted regulation of C(3) carboxylation and C(4) decarboxylation fluxes to cover the increased demand for lysine formation; thus, the overall increase was a consequence of concerted regulation of C(3) carboxylation and C(4) decarboxylation fluxes. The relative flux through isocitrate dehydrogenase dropped from 82.7% in the wild type to 59.9% in the lysine-producing mutants. In contrast to the NADPH demand, which increased from 109 to 172% due to the increasing lysine yield, the overall NADPH supply remained constant between 185 and 196%, resulting in a decrease in the apparent NADPH excess through strain optimization. Extrapolated to industrial lysine producers, the NADPH supply might become a limiting factor. The relative contributions of PPP and the tricarboxylic acid cycle to NADPH generation changed markedly, indicating that C. glutamicum is able to maintain a constant supply of NADPH under completely different flux conditions. Statistical analysis by a Monte Carlo approach revealed high precision for the estimated fluxes, underlining the

  7. GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping

    DEFF Research Database (Denmark)

    Mailund, T

    2006-01-01

    GeneRecon is a software package for linkage disequilibrium mapping using coalescent theory. It is based on Bayesian Markov-chain Monte Carlo (MCMC) method for fine-scale linkage-disequilibrium gene mapping using high-density marker maps. GeneRecon explicitly models the genealogy of a sample...

  8. Cohesión social como programa arquitectónico: genealogías tentativas del edificio UNCTADIII/CCMGM. / Social cohesion as an architecture Layout: the genealogic background of the UNCTADIII building.

    Directory of Open Access Journals (Sweden)

    David Maulén de los Reyes

    2011-12-01

    Full Text Available El edificio del actual Centro Cultural Gabriela Mistral es resultado de una singular historia arquitectónica, pero no es un hecho aislado en el desarrollo arquitectónico del siglo XX en Chile. En este artículo el autor ofrece una genealogía tentativa para los ideales tras este proyecto./ The Centro Cultural Gabriela Mistral is a singularity in the Chilean architecture, but this is not an isolated project. The author offers a genealogy for the ideological background of this building.

  9. Former east, former west: Post-socialist nostalgia and feminist genealogies in today’s Europe

    Directory of Open Access Journals (Sweden)

    Bonfiglioli Chiara

    2011-01-01

    Full Text Available This paper connects current studies of post-socialist nostalgia to the issue of feminist genealogies in the contemporary European context. Studies of post-socialist nostalgia can prove significant not only for the former socialist East - to which they have traditionally been limited - but also for the “former West”, that is post-Cold War Western Europe. In the first part of my paper I draw a connection between feminist genealogies and post-socialist nostalgia in the former East, looking in particular at the phenomenon of Yugonostalgia from a gendered and feminist perspective, and taking my research on the 1978 Belgrade feminist conference Drugarica Zena/Comrade Woman as a point of departure. The narrative about Yugoslavia being closer to Western Europe and to Western European feminist movements in the 1970s, in comparison to today’s marginalization of post-Yugoslav successor states, indicates that changes in gender regimes are deeply connected to shifts in ideological and geopolitical relations, including the shifting boundaries of Europe after 1989. In the second part of this essay I transpose the study of post-socialist nostalgia to the former West. When looking more closely at Western European countries, particularly at those who had significant communist parties such as Italy and France, it is clear that even in the West certain articulations of post-socialist nostalgia for radical pasts have emerged, helping us to unravel women’s and feminist movements’ genealogies that have been made invisible. I take the case of the recent Italian movie Cosmonauta as a symptom of post-socialist nostalgia in the former West.

  10. The tumor suppressor homolog in fission yeast, myh1{sup +}, displays a strong interaction with the checkpoint gene rad1{sup +}

    Energy Technology Data Exchange (ETDEWEB)

    Jansson, Kristina; Warringer, Jonas; Farewell, Anne [Department of Cell and Molecular Biology, Lundberg Laboratory, Goeteborg University, P.O. Box 462, Goeteborg SE-405 30 (Sweden); Park, Han-Oh [Bioneer Corporation, 49-3, Munpyeong-dong, Daedeok-gu, Daejon 306-220 (Korea, Republic of); Hoe, Kwang-Lae; Kim, Dong-Uk [Functional Genomics Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yusong, Daejeon (Korea, Republic of); Hayles, Jacqueline [Cell Cycle Laboratory, Cancer Research UK, London Research Institute, 44 Lincoln' s Inn Fields, London WC2A 3PX (United Kingdom); Sunnerhagen, Per [Department of Cell and Molecular Biology, Lundberg Laboratory, Goeteborg University, P.O. Box 462, Goeteborg SE-405 30 (Sweden)], E-mail: per.sunnerhagen@cmb.gu.se

    2008-09-26

    The DNA glycosylase MutY is strongly conserved in evolution, and homologs are found in most eukaryotes and prokaryotes examined. This protein is implicated in repair of oxidative DNA damage, in particular adenine mispaired opposite 7,8-dihydro-8-oxoguanine. Previous investigations in Escherichia coli, fission yeast, and mammalian cells show an association of mutations in MutY homologs with a mutator phenotype and carcinogenesis. Eukaryotic MutY homologs physically associate with several proteins with a role in replication, DNA repair, and checkpoint signaling, specifically the trimeric 9-1-1 complex. In a genetic investigation of the fission yeast MutY homolog, myh1{sup +}, we show that the myh1 mutation confers a moderately increased UV sensitivity alone and in combination with mutations in several DNA repair genes. The myh1 rad1, and to a lesser degree myh1 rad9, double mutants display a synthetic interaction resulting in enhanced sensitivity to DNA damaging agents and hydroxyurea. UV irradiation of myh1 rad1 double mutants results in severe chromosome segregation defects and visible DNA fragmentation, and a failure to activate the checkpoint. Additionally, myh1 rad1 double mutants exhibit morphological defects in the absence of DNA damaging agents. We also found a moderate suppression of the slow growth and UV sensitivity of rhp51 mutants by the myh1 mutation. Our results implicate fission yeast Myh1 in repair of a wider range of DNA damage than previously thought, and functionally link it to the checkpoint pathway.

  11. Michel Foucault and the genealogy as a criticism of the present

    OpenAIRE

    Selvino José Assmann; Nei Antonio Nunes

    2007-01-01

    The main goal of this paper is to analyze the criticism to modernity that is in Foucault’s genealogy. First we discuss Focault’s analysis of Kant’s article on Aufklärung and Baudelaire’s concept of dandy. So, we focus gave emphasis the “truth analytic” and its ontextualization made by Foucault of the social role of an intellectual in the light of the great changes in knowledge and in the practices of power in the last decades. To conclude, we suggest that, by studying the Aufklärung investiga...

  12. Notes for a Genealogy of Dress Codes and Aestheticizing Technologies in the Colombian School

    Directory of Open Access Journals (Sweden)

    Alexánder Aldana Bautista

    2016-08-01

    Full Text Available This article shows an analysis of the schoolchild’s construction from a series of aestheticizing technologies that constitute a child’s body in which the aesthetic utopia of modern school is inscribed. The paper, derived from an archaeological–genealogical research about school uniform and dress codes in the Colombian school during the late twentieth century and the early twenty– first century revolves around the following questions: What enabled the emergence of some discourses about school bodies, appropriate appearance and attire in the Colombian school? How did the school subject became a properly uniformed, seemly, neat, respectful and beauty person?

  13. What's in a name? Y chromosomes, surnames and the genetic genealogy revolution.

    Science.gov (United States)

    King, Turi E; Jobling, Mark A

    2009-08-01

    Heritable surnames are highly diverse cultural markers of coancestry in human populations. A patrilineal surname is inherited in the same way as the non-recombining region of the Y chromosome and there should, therefore, be a correlation between the two. Studies of Y haplotypes within surnames, mostly of the British Isles, reveal high levels of coancestry among surname cohorts and the influence of confounding factors, including multiple founders for names, non-paternities and genetic drift. Combining molecular genetics and surname analysis illuminates population structure and history, has potential applications in forensic studies and, in the form of 'genetic genealogy', is an area of rapidly growing interest for the public.

  14. Rare event computation in deterministic chaotic systems using genealogical particle analysis

    Science.gov (United States)

    Wouters, J.; Bouchet, F.

    2016-09-01

    In this paper we address the use of rare event computation techniques to estimate small over-threshold probabilities of observables in deterministic dynamical systems. We demonstrate that genealogical particle analysis algorithms can be successfully applied to a toy model of atmospheric dynamics, the Lorenz ’96 model. We furthermore use the Ornstein-Uhlenbeck system to illustrate a number of implementation issues. We also show how a time-dependent objective function based on the fluctuation path to a high threshold can greatly improve the performance of the estimator compared to a fixed-in-time objective function.

  15. An attempt to predict the earning status of a thoroughbred in France by genealogical data

    OpenAIRE

    Langlois, Bertrand; Hernu, Vincent

    2003-01-01

    International audience; The objective of this study was to create indicators to predict which horses had more chances to be placed in races than others. The study was limited to genealogical independent variables (i.e. concerning sires, dams, paternal and maternal half sibs of the horse). It concerned the racing career of 60 851 thoroughbreds born in France between 1980 and 1995 (i.e. annual earnings in flat races of 2 to 5 year-olds and in jumping races of 3 to 5 year-olds). The earning stat...

  16. Redefinisi Kaum Paderi Melalui Metodologi Genealogis Foucauldian Sebagai Rekonsiliasi Etnis Minangkabau-Batak

    Directory of Open Access Journals (Sweden)

    Alfi Arifian

    2016-11-01

    Full Text Available Redefinisi Kaum Paderi merupakan konsep pendefinisian Kaum Paderi berdasarkan metodologi genealogis yang menulis sejarah berdasarkan kerangka kekinian. Definisi ini berbeda dari definisi Kaum Paderi dalam pandangan sejarah umum. Redefinisi ini dimaksudkan untuk memetakan gerakan Paderi berdasarkan konsep kekuasaan berbasis keamiran melalui gelar Tuanku Imam Bonjol merujuk kerangka kekuasaan nagari (balad-dalam pemahaman imamah. Tujuan pemetaan gerakan Paderi adalah membuktikan (secara teori bahwa ada dikotomi di tubuh Paderi sebagai gerakan pemurni Islam serta yang bersifat radikal. Dikotomi inilah yang digunakan sebagai dalih untuk membangun wacana rekonsiliasi antara etnis Minangkabau-Batak lantaran konflik masa lalu "Perang Paderi" jilid I.

  17. Inquires into the Genealogy of Self-interest in Adam Smith

    OpenAIRE

    Scalzo, G.R. (Germán Roberto)

    2010-01-01

    This work inquires into the genealogy of self-interest, from half XVII century to the publication of The Wealth of Nations, in 1776, which is considered to be the foundation of Modern Economic Science. The selfish hypothesis –the idea that self-interest is the motive of human action–, which is based on an Epicurean-Agustinian scheme, will be placed in the Smith neo-Stoic perspective. Otherwise, political and economical arguments for Capitalism before his triumph will be analized, in relation ...

  18. Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations

    DEFF Research Database (Denmark)

    Sahana, Goutam; Mailund, Thomas; Lund, Mogens Sandø

    2011-01-01

    be extended to incorporate other effects in a straightforward and rigorous fashion. Here, we present a complementary approach, called ‘GENMIX (genealogy based mixed model)’ which combines advantages from two powerful GWAS methods: genealogy-based haplotype grouping and MMA. Subjects and Methods: We validated......Introduction: The state-of-the-art for dealing with multiple levels of relationship among the samples in genome-wide association studies (GWAS) is unified mixed model analysis (MMA). This approach is very flexible, can be applied to both family-based and population-based samples, and can...

  19. Genealogy and Demographic History of a Widespread Amphibian throughout Indochina.

    Science.gov (United States)

    Blair, Christopher; Davy, Christina M; Ngo, Andre; Orlov, Nikolai L; Shi, Hai-tao; Lu, Shun-qing; Gao, Lan; Rao, Ding-qi; Murphy, Robert W

    2013-01-01

    Relatively little is known about spatial patterns of cryptic diversity in tropical species and the processes that generate them. Few studies examine the geographic distribution of genetic lineages in Southeast Asia, an area hypothesized to harbor substantial cryptic diversity. We investigated the evolutionary history of Asian tree frogs of the Polypedates leucomystax complex (n = 172) based on 1800 bp of the mtDNA genes ND1 and cytochrome b and tested hypotheses pertaining to climate, geology, and dispersal patterns. Analyses revealed substantial genetic diversity and lineage divergence throughout the region with evidence for widespread sympatric lineages and a general north versus south clustering. Relaxed molecular clock analysis and tests for demographic expansion identified an initial cladogenesis during the Miocene with subsequent Plio-Pleistocene diversification, with the former corresponding to periods of increased aridity and the onset of monsoonal weather systems. Rates of diversification were relatively constant until the Early Pleistocene when rates increased exponentially. We found equivocal evidence for isolation-by-distance and a potential role of some landscape features as partial barriers to dispersal. Finally, our analyses showed that divergence between insular and mainland populations occurred before Homo sapiens colonized Southeast Asia, suggesting that historical human-mediated dispersal did not drive insular diversification. Our results suggested that demographic expansion in the Late Pleistocene resulted in widespread sympatric lineages in the P. leucomystax complex throughout southern China and Indochina and further clarified the evolutionary history of lineages within P. leucomystax.

  20. A sugar beet chlorophyll a/b binding protein promoter void of G-box like elements confers strong and leaf specific reporter gene expression in transgenic sugar beet

    OpenAIRE

    Kloos Dorothee U; Stahl Dietmar J; Hehl Reinhard

    2004-01-01

    Abstract Background Modification of leaf traits in sugar beet requires a strong leaf specific promoter. With such a promoter, expression in taproots can be avoided which may otherwise take away available energy resources for sugar accumulation. Results Suppression Subtractive Hybridization (SSH) was utilized to generate an enriched and equalized cDNA library for leaf expressed genes from sugar beet. Fourteen cDNA fragments corresponding to thirteen different genes were isolated. Northern blot...

  1. Genealogy of wine grape cultivars: "Pinot" is related to "Syrah".

    Science.gov (United States)

    Vouillamoz, J F; Grando, M S

    2006-08-01

    Since the domestication of wild grapes ca 6000 years ago, numerous cultivars have been generated by spontaneous or deliberate crosses, and up to 10 000 are still in existence today. Just as in human paternity analysis, DNA typing can reveal unexpected parentage of grape cultivars. In this study, we have analysed 89 grape cultivars with 60 microsatellite markers in order to accurately calculate the identity-by-descent (IBD) and relatedness (r) coefficients among six putatively related cultivars from France ("Pinot", "Syrah" and "Dureza") and northern Italy ("Teroldego", "Lagrein" and "Marzemino"). Using a recently developed likelihood-based approach to analyse kinship in grapes, we provide the first evidence of a genetic link between grapes across the Alps: "Dureza" and "Teroldego" turn out to be full-siblings (FS). For the first time in grapevine genetics we were able to detect FS without knowing one of the parents and identify unexpected second-degree relatives. We reconstructed the most likely pedigree that revealed a third-degree relationship between the worldwide-cultivated "Pinot" from Burgundy and "Syrah" from the Rhone Valley. Our finding was totally unsuspected by classical ampelography and it challenges the commonly assumed independent origins of these grape cultivars. Our results and this new approach in grape genetics will (a) help grape breeders to avoid choosing closely related varieties for new crosses, (b) provide pedigrees of cultivars in order to detect inheritance of disease-resistance genes and (c) open the way for future discoveries of first- and second-degree relationships between grape cultivars in order to better understand viticultural migrations.

  2. Emergence of gynodioecy in wild beet (Beta vulgaris ssp. maritima L.): a genealogical approach using chloroplastic nucleotide sequences

    Science.gov (United States)

    Fénart, Stéphane; Touzet, Pascal; Arnaud, Jean-François; Cuguen, Joël

    2006-01-01

    Gynodioecy is a breeding system where both hermaphroditic and female individuals coexist within plant populations. This dimorphism is the result of a genomic interaction between maternally inherited cytoplasmic male sterility (CMS) genes and bi-parentally inherited nuclear male fertility restorers. As opposed to other gynodioecious species, where every cytoplasm seems to be associated with male sterility, wild beet Beta vulgaris ssp. maritima exhibits a minority of sterilizing cytoplasms among numerous non-sterilizing ones. Many studies on population genetics have explored the molecular diversity of different CMS cytoplasms, but questions remain concerning their evolutionary dynamics. In this paper we report one of the first investigations on phylogenetic relationships between CMS and non-CMS lineages. We investigated the phylogenetic relationships between 35 individuals exhibiting different mitochondrial haplotypes. Relying on the high linkage disequilibrium between chloroplastic and mitochondrial genomes, we chose to analyse the nucleotide sequence diversity of three chloroplastic fragments (trnK intron, trnD–trnT and trnL–trnF intergenic spacers). Nucleotide diversity appeared to be low, suggesting a recent bottleneck during the evolutionary history of B. vulgaris ssp. maritima. Statistical parsimony analyses revealed a star-like genealogy and showed that sterilizing haplotypes all belong to different lineages derived from an ancestral non-sterilizing cytoplasm. These results suggest a rapid evolution of male sterility in this taxon. The emergence of gynodioecy in wild beet is confronted with theoretical expectations, describing either gynodioecy dynamics as the maintenance of CMS factors through balancing selection or as a constant turnover of new CMSs. PMID:16777728

  3. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.

    Science.gov (United States)

    Drummond, Alexei J; Nicholls, Geoff K; Rodrigo, Allen G; Solomon, Wiremu

    2002-07-01

    Molecular sequences obtained at different sampling times from populations of rapidly evolving pathogens and from ancient subfossil and fossil sources are increasingly available with modern sequencing technology. Here, we present a Bayesian statistical inference approach to the joint estimation of mutation rate and population size that incorporates the uncertainty in the genealogy of such temporally spaced sequences by using Markov chain Monte Carlo (MCMC) integration. The Kingman coalescent model is used to describe the time structure of the ancestral tree. We recover information about the unknown true ancestral coalescent tree, population size, and the overall mutation rate from temporally spaced data, that is, from nucleotide sequences gathered at different times, from different individuals, in an evolving haploid population. We briefly discuss the methodological implications and show what can be inferred, in various practically relevant states of prior knowledge. We develop extensions for exponentially growing population size and joint estimation of substitution model parameters. We illustrate some of the important features of this approach on a genealogy of HIV-1 envelope (env) partial sequences.

  4. Lost in translation: a genealogy of the "social capital" concept in public health.

    Science.gov (United States)

    Moore, S; Haines, V; Hawe, P; Shiell, A

    2006-08-01

    To examine the genealogy of the social capital concept in public health, with attention to the epistemological concerns and academic practices that shaped the way in which this concept was translated into public health. A citation-network path analysis of the public health literature on social capital was used to generate a genealogy of the social capital concept in public health. The analysis identifies the intellectual sources, influential texts, and developments in the conceptualisation of social capital in public health. The population of 227 texts (articles, books, reports) was selected in two phases. Phase 1 texts were articles in the PubMed database with "social capital" in their title published before 2003 (n = 65). Phase 2 texts are those texts cited more than once by phase 1 articles (n = 165). The analysis shows how the scholarship of Robert Putnam has been absorbed into public health research, how three seminal texts appearing in 1996 and 1997 helped shape the communitarian form that the social capital concept has assumed in public health, and how both were influenced by the epistemological context of social epidemiology at the time. Originally viewed in public health research as an ecological level, psychosocial mechanism that might mediate the income inequality-health pathway, the dominance of the communitarian approach to social capital has given disproportionate attention to normative and associational properties of places. Network approaches to social capital were lost in this translation. Recovering them is key to a full translation and conceptualisation of social capital in public health.

  5. "Father to no one": gender, genealogy, and storytelling in go down, Moses "Father to no one": gender, genealogy, and storytelling in go down, Moses

    Directory of Open Access Journals (Sweden)

    Barbara Ladd

    2008-04-01

    Full Text Available "Was", the first story of Go Down, Moses, opens with the disclaimer that the protagonist Isaac McCaslin is "father to no one" and that the story to follow: was not something participated in or even seen by himself, but by his elder cousin, McCaslin Edmonds, grandson of Isaac's father's sister and so descended by the distaff, yet notwithstanding the inheritor, and in his time the bequestor, of that which some had thought then and some still thought should have been Isaac's, since his was the name in which the title to the land had first been granted from the Indian patent and which some of the descendants of his father's slaves still bore in the land. But Isaac was not one of these... (3. What is almost immediately clear is that the hook opens with issues of gender, genealogy, and inheritance foregrounded, and that these issues concern not merely the transmission of land from generation to generation but the transmission of stories, a kind of "naming" of one's relationship to the past that echoes the assigning of family names in the above passage. "Was", the first story of Go Down, Moses, opens with the disclaimer that the protagonist Isaac McCaslin is "father to no one" and that the story to follow: was not something participated in or even seen by himself, but by his elder cousin, McCaslin Edmonds, grandson of Isaac's father's sister and so descended by the distaff, yet notwithstanding the inheritor, and in his time the bequestor, of that which some had thought then and some still thought should have been Isaac's, since his was the name in which the title to the land had first been granted from the Indian patent and which some of the descendants of his father's slaves still bore in the land. But Isaac was not one of these... (3. What is almost immediately clear is that the hook opens with issues of gender, genealogy, and inheritance foregrounded, and that these issues concern not merely the transmission of land

  6. genealogies and spiritualities in genesis 4:17-22, 4:25-26, 5:1-32 1 ...

    African Journals Online (AJOL)

    Each of these approaches to genealogy has a different intent; each wants to in- ... Neither of these is unique in the points they make: Albertz acknowledges as much ... subject matter of spirituality being the cognitive, emotional, behavioral and other ... such study of the faith we find reflected in the Old Testament may well.

  7. Swedish Progressive School Politics and the Disciplinary Regime of the School, 1946-1962: A Genealogical Perspective

    Science.gov (United States)

    Qvarsebo, Jonas U. D.

    2013-01-01

    This article examines the vision of the Swedish comprehensive school reform between 1946-1962 as it pertains to the ever-troubling questions of discipline and order in school. Inspired primarily by the work of Michel Foucault and his genealogical perspective, the article problematises the notion that character formation and school discipline…

  8. Swedish Progressive School Politics and the Disciplinary Regime of the School, 1946-1962: A Genealogical Perspective

    Science.gov (United States)

    Qvarsebo, Jonas U. D.

    2013-01-01

    This article examines the vision of the Swedish comprehensive school reform between 1946-1962 as it pertains to the ever-troubling questions of discipline and order in school. Inspired primarily by the work of Michel Foucault and his genealogical perspective, the article problematises the notion that character formation and school discipline…

  9. What phylogeny and gene genealogy analyses reveal about homoplasy in citrus microsatellite alleles

    Science.gov (United States)

    Sixty-five microsatellite alleles from three Simple Sequence Repeat (SSR) loci (cAGG9, CCT01 and GT03) of various Citrus, Fortunella or Poncirus accessions were cloned and sequenced to determine their mode of evolution. This data was used to assess sequence variation by calculating the average numb...

  10. 白族家谱的特色及价值%The Characteristic and Value of Bai Genealogy

    Institute of Scientific and Technical Information of China (English)

    何俊伟

    2014-01-01

    白族家谱深受汉族家谱的影响,在秉承中国传统家谱文化的同时,在家谱编纂特征之篇幅、体裁、体例、首纂时间、追溯历史等方面;在家谱内容特性之白族姓氏族源、冠姓父子连名制、重名制、白文记载等方面都具有鲜明的民族特色。白族家谱是记载白族历史文化的资料库,对补正史料、白族民俗的研究及建设现代家庭道德和精神文明都具有重要的价值。%Influenced by the Han genealogy and absorbs traditional Chinese culture at the same time, Bai genealogy possesses its own distinct ethnic characteristics in compilation features of genealogy: space, genre, style, the first compilation time and history; and in content characteristics of genealogy:the origin of Bai surname, naming conventions—Han surname with linking given name between father and son, father and son share the same name and the records written in Bai language, etc. Bai genealogy records, the database of Bai history and culture, which enjoy great research values in the correction of historical data and Bai custom, and the construction of modern family's moral and spiritual civilization.

  11. Divorcing China: The Swing from the Patrilineal Genealogy of China to the Matrilineal Genealogy of Taiwan in Taiwan’s National Imagination

    Directory of Open Access Journals (Sweden)

    Yin C. Chuang

    2011-01-01

    Full Text Available This paper explores the popular concept of the relationship between Taiwan and China as a feminine/ masculine dichotomy which has been constructed within Taiwan’s national imagination. First, I will focus on how this dichotomy has been created within the process of identity-shifting in Taiwan since the 1990s as manifested in Taiwanese pop songs. Second, I will demonstrate how it has been appropriated within the process of nation-building. Two primary questions will be addressed: How is the national imagination of Taiwan in Taiwanese pop songs constructed through maternal and feminine images? How is the matrilineal genealogy in Taiwanese pop songs appropriated by the opposition camp, namely the Democratic Progressive Party (DPP, to mobilize voters? I will investigate, from a cultural studies perspective, how cultural imagination has come to serve as the vehicle to formulate resistance, mobilize voters, gain power and, most importantly, reconstruct Taiwanese nationalism within Taiwan’s political limbo for decades. Furthermore, Margaret Somers’ discussion (1993, 1994, 1995a, 1995b, 1995c; Somers and Gibson 1994 of narrative identity is adopted as the framework for this paper in order to look at how identities are constructed within and across multiple realms. My research methods consist of conducting in-depth interviews and analysing texts.

  12. Identification of the MUC2 Promoter as a Strong Promoter for Intestinal Gene Expression through Generation of Transgenic Quail Expressing GFP in Gut Epithelial Cells

    Directory of Open Access Journals (Sweden)

    Rachel M. Woodfint

    2017-01-01

    Full Text Available Identification of tissue- and stage-specific gene promoters is valuable for delineating the functional roles of specific genes in genetically engineered animals. Here, through the comparison of gene expression in different tissues by analysis of a microarray database, the intestinal specificity of mucin 2 (MUC2 expression was identified in mice and humans, and further confirmed in chickens by RT-PCR (reverse transcription-PCR analysis. An analysis of cis-acting elements in avian MUC2 gene promoters revealed conservation of binding sites, within a 2.9 kb proximal promoter region, for transcription factors such as caudal type homeobox 2 (CDX2, GATA binding protein 4 (GATA4, hepatocyte nuclear factor 4 α (HNF4A, and transcription factor 4 (TCF4 that are important for maintaining intestinal homeostasis and functional integrity. By generating transgenic quail, we demonstrated that the 2.9 kb chicken MUC2 promoter could drive green fluorescent protein (GFP reporter expression exclusively in the small intestine, large intestine, and ceca. Fluorescence image analysis further revealed GFP expression in intestine epithelial cells. The GFP expression was barely detectable in the embryonic intestine, but increased during post-hatch development. The spatiotemporal expression pattern of the reporter gene confirmed that the 2.9 kb MUC2 promoter could retain the regulatory element to drive expression of target genes in intestinal tissues after hatching. This new transgene expression system, using the MUC2 promoter, will provide a new method of overexpressing target genes to study gene function in the avian intestine.

  13. Identification of the MUC2 Promoter as a Strong Promoter for Intestinal Gene Expression through Generation of Transgenic Quail Expressing GFP in Gut Epithelial Cells

    Science.gov (United States)

    Woodfint, Rachel M.; Chen, Paula R.; Ahn, Jinsoo; Suh, Yeunsu; Hwang, Seongsoo; Lee, Sang Suk; Lee, Kichoon

    2017-01-01

    Identification of tissue- and stage-specific gene promoters is valuable for delineating the functional roles of specific genes in genetically engineered animals. Here, through the comparison of gene expression in different tissues by analysis of a microarray database, the intestinal specificity of mucin 2 (MUC2) expression was identified in mice and humans, and further confirmed in chickens by RT-PCR (reverse transcription-PCR) analysis. An analysis of cis-acting elements in avian MUC2 gene promoters revealed conservation of binding sites, within a 2.9 kb proximal promoter region, for transcription factors such as caudal type homeobox 2 (CDX2), GATA binding protein 4 (GATA4), hepatocyte nuclear factor 4 α (HNF4A), and transcription factor 4 (TCF4) that are important for maintaining intestinal homeostasis and functional integrity. By generating transgenic quail, we demonstrated that the 2.9 kb chicken MUC2 promoter could drive green fluorescent protein (GFP) reporter expression exclusively in the small intestine, large intestine, and ceca. Fluorescence image analysis further revealed GFP expression in intestine epithelial cells. The GFP expression was barely detectable in the embryonic intestine, but increased during post-hatch development. The spatiotemporal expression pattern of the reporter gene confirmed that the 2.9 kb MUC2 promoter could retain the regulatory element to drive expression of target genes in intestinal tissues after hatching. This new transgene expression system, using the MUC2 promoter, will provide a new method of overexpressing target genes to study gene function in the avian intestine. PMID:28106824

  14. Discovery of a strongly-interrelated gene network in corals under constant darkness by correlation analysis after wavelet transform on complex network model.

    Directory of Open Access Journals (Sweden)

    Longlong Liu

    Full Text Available Coral reefs occupy a relatively small portion of sea area, yet serve as a crucial source of biodiversity by establishing harmonious ecosystems with marine plants and animals. Previous researches mainly focused on screening several key genes induced by stress. Here we proposed a novel method--correlation analysis after wavelet transform of complex network model, to explore the effect of light on gene expression in the coral Acropora millepora based on microarray data. In this method, wavelet transform and the conception of complex network were adopted, and 50 key genes with large differences were finally captured, including both annotated genes and novel genes without accurate annotation. These results shed light on our understanding of coral's response toward light changes and the genome-wide interaction among genes under the control of biorhythm, and hence help us to better protect the coral reef ecosystems. Further studies are needed to explore how functional connections are related to structural connections, and how connectivity arises from the interactions within and between different systems. The method introduced in this study for analyzing microarray data will allow researchers to explore genome-wide interaction network with their own dataset and understand the relevant biological processes.

  15. Application of the phylogenetic species concept to Wallemia sebi from house dust and indoor air revealed by multi-locus genealogical concordance.

    Directory of Open Access Journals (Sweden)

    Hai D T Nguyen

    Full Text Available A worldwide survey of Wallemia occurring in house dust and indoor air was conducted. The isolated strains were identified as W. sebi and W. muriae. Previous studies suggested that the W. sebi phylogenetic clade contained cryptic species but conclusive evidence was lacking because only the internal transcribed spacer (ITS marker was analyzed. The ITS and four protein-coding genes (MCM7, RPB1, RPB2, and TSR1 were sequenced for 85 isolates. Based on an initial neighbor joining analysis of the concatenated genes, W. muriae remained monophyletic but four clades were found in W. sebi, which we designated as W. sebi clades 1, 2, 3, and 4. We hypothesized that these clades represent distinct phylogenetic species within the Wallemia sebi species complex (WSSC. We then conducted multiple phylogenetic analyses and demonstrated genealogical concordance, which supports the existence of four phylogenetic species within the WSSC. Geographically, W. muriae was only found in Europe, W. sebi clade 3 was only found in Canada, W. sebi clade 4 was found in subtropical regions, while W. sebi clade 1 and 2 were found worldwide. Haplotype analysis showed that W. sebi clades 1 and 2 had multiple haplotypes while W. sebi clades 3 and 4 had one haplotype and may have been under sampled. We describe W. sebi clades 2, 3, and 4 as new species in a companion study.

  16. Michel Foucault and the genealogy as a criticism of the present

    Directory of Open Access Journals (Sweden)

    Selvino José Assmann

    2008-04-01

    Full Text Available The main goal of this paper is to analyze the criticism to modernity that is in Foucault’s genealogy. First we discuss Focault’s analysis of Kant’s article on Aufklärung and Baudelaire’s concept of dandy. So, we focus gave emphasis the “truth analytic” and its ontextualization made by Foucault of the social role of an intellectual in the light of the great changes in knowledge and in the practices of power in the last decades. To conclude, we suggest that, by studying the Aufklärung investigating the excess of modern racionality, Foucault tries to reassess the possibilities of freedom practices, sustaining the criticism exercise as philosophical ethos. This is needed to redefine the governability and ethical and political commitments made by the agents in different social places.

  17. Mirror rubbing: a critical genealogy of pre-modern Chinese female same-sex eroticism.

    Science.gov (United States)

    Shi, Liang

    2013-01-01

    This article offers a critical genealogy of pre-modern Chinese female same-sex relationships. Through the analysis of the primary source materials in history, fiction, and drama, the author shows that female homosexuality is silenced and suppressed. To Confucianism, female same-sex relationships threaten to exclude men from accessing female sex and keep women away from participating in extending the family line. Even the Daoist theory of sex can be used to discriminate against female homosexuality by denying women the ability to initiate and maintain the cycle of yin-yang interaction in sexual intercourse. There are 2 recurring themes in the male writers' imaginings of female same-sex eroticism. First, heterosexuality is the preferred sexual order, and female same-sex desire arises due to the lack of sexual access to men. Second, heterosexual relationships and intercourse are the norm that female homosexuality aspires to imitate.

  18. Universal cures for idiosyncratic illnesses: A genealogy of therapeutic reasoning in the mental health field.

    Science.gov (United States)

    Collin, Johanne

    2015-05-01

    Over the past decades, there has been a significant increase in prescriptions of psychotropic drugs for mental disorders. So far, most of the explanations of the phenomenon have focused on the process of medicalization, but little attention has been cast towards physicians' day-to-day clinical reasoning, and the way it affects therapeutic decision-making. This article addresses the complex relationship between aetiology, diagnosis and drug treatment by examining the style of reasoning underlying prescribing practices through an historical lens. A genealogy of contemporary prescribing practices is proposed, that draws significant comparisons between 19th-century medicine and modern psychiatry. Tensions between specific, standardized cures and specific, idiosyncratic patients have been historically at play in clinical reasoning - and still are today. This inquiry into the epistemological foundations of contemporary drug prescription reveals an underlying search for scientific legitimacy.

  19. Lineage identification and genealogical relationships among captive Galápagos tortoises.

    Science.gov (United States)

    Benavides, Edgar; Russello, Michael; Boyer, Donal; Wiese, Robert J; Kajdacsi, Brittney; Marquez, Lady; Garrick, Ryan; Caccone, Adalgisa

    2012-01-01

    Genetic tools have become a critical complement to traditional approaches for meeting short- and long-term goals of ex situ conservation programs. The San Diego Zoo (SDZ) harbors a collection of wild-born and captive-born Galápagos giant tortoises (n = 22) of uncertain species designation and unknown genealogical relationships. Here, we used mitochondrial DNA haplotypic data and nuclear microsatellite genotypic data to identify the evolutionary lineage of wild-born and captive-born tortoises of unknown ancestry, to infer levels of relatedness among founders and captive-born tortoises, and assess putative pedigree relationships assigned by the SDZ studbook. Assignment tests revealed that 12 wild-born and five captive-born tortoises represent five different species from Isabela Island and one species from Santa Cruz Island, only five of which were consistent with current studbook designations. Three wild-born and one captive-born tortoise were of mixed ancestry. In addition, kinship analyses revealed two significant first-order relationship pairs between wild-born and captive-born tortoises, four second-order relationships (half-sibling) between wild-born and captive tortoises (full-sibs or parent-offspring), and one second-order relationship between two captive-born tortoises. Of particular note, we also reconstructed a first-order relationship between two wild-born individuals, violating the founder assumption. Overall, our results contribute to a worldwide effort in identifying genetically important Galápagos tortoises currently in captivity while revealing closely related founders, reconstructing genealogical relationships, and providing detailed management recommendations for the SDZ tortoises.

  20. Genealogía hipnótica del mito del zombi: The Magic Island (1929

    Directory of Open Access Journals (Sweden)

    Carcavilla Puey, Lorenzo

    2013-06-01

    Full Text Available This is the first of series of articles that aims to study the history and psychological significance of the “myth of the zombie” through the analysis of its allegorical and symbolic elements, based on a myth’s conceptualization extracted from the notions of Jung’s analytical psychology and Eliade’s history of religions. Here, we’ll look deeply into the symbolic genealogy that comes before and it’s inserted in zombie conception in Seabrook’s The magic island (first text where zombie appears as living dead through a comparative analysis with the somnambulist in literature and filmography of “the dark side of animal magnetism and hypnosis” and its connection with the automaton.Este es el primero de una serie de artículos en los que se pretende estudiar la historia y la significación psicológica del “mito del zombi” a través del análisis de sus elementos alegóricos y simbólicos partiendo de una conceptualización de “mito” extraída de las nociones de la psicología analítica de Jung y de la historia de las religiones de Eliade. Aquí profundizaremos en la genealogía simbólica que antecede y se inserta en la concepción del zombi en The Magic Island de Seabrook (primer texto donde aparece el zombi como muerto viviente a través del análisis comparativo con el sonámbulo de la literatura y cinematografía del “lado oscuro del magnetismo animal y la hipnosis” y su relación con el autómata.

  1. Evolutionary analyses of non-genealogical bonds produced by introgressive descent.

    Science.gov (United States)

    Bapteste, Eric; Lopez, Philippe; Bouchard, Frédéric; Baquero, Fernando; McInerney, James O; Burian, Richard M

    2012-11-06

    All evolutionary biologists are familiar with evolutionary units that evolve by vertical descent in a tree-like fashion in single lineages. However, many other kinds of processes contribute to evolutionary diversity. In vertical descent, the genetic material of a particular evolutionary unit is propagated by replication inside its own lineage. In what we call introgressive descent, the genetic material of a particular evolutionary unit propagates into different host structures and is replicated within these host structures. Thus, introgressive descent generates a variety of evolutionary units and leaves recognizable patterns in resemblance networks. We characterize six kinds of evolutionary units, of which five involve mosaic lineages generated by introgressive descent. To facilitate detection of these units in resemblance networks, we introduce terminology based on two notions, P3s (subgraphs of three nodes: A, B, and C) and mosaic P3s, and suggest an apparatus for systematic detection of introgressive descent. Mosaic P3s correspond to a distinct type of evolutionary bond that is orthogonal to the bonds of kinship and genealogy usually examined by evolutionary biologists. We argue that recognition of these evolutionary bonds stimulates radical rethinking of key questions in evolutionary biology (e.g., the relations among evolutionary players in very early phases of evolutionary history, the origin and emergence of novelties, and the production of new lineages). This line of research will expand the study of biological complexity beyond the usual genealogical bonds, revealing additional sources of biodiversity. It provides an important step to a more realistic pluralist treatment of evolutionary complexity.

  2. 基于二叉树的电子家谱设计方法%The design technique of binary-based e-genealogy

    Institute of Scientific and Technical Information of China (English)

    陈国军; 张庭玉

    2015-01-01

    Genealogy,recording for family members and relations,has important academic value and practical value.In this paper,combined with the actual situation in life,the design of an electronic genealogical management system is based on the binary tree.Realizing the storage and analysis of genealogy,the systemcan also store,update,statistics with genealogy and other functions.%家谱用于记录家族成员情况与关系,具有重要的学术研究价值和实用价值.本文结合生活中实际情况,设计一种基于二叉树的电子家谱管理系统.实现了对家族所有资料的存储分析,具备家谱存储、更新、查询、统计等功能.

  3. How strong is the association between CAG and GGN repeat length polymorphisms in the androgen receptor gene and prostate cancer risk?

    NARCIS (Netherlands)

    Zeegers, M.P.; Kiemeney, L.A.L.M.; Nieder, A.M.; Ostrer, H.

    2004-01-01

    OBJECTIVE: Although narrative reviews have suggested an association between (CAG)n and (GGN)n polymorphisms in the AR gene and prostate cancer, it has never been quantified systematically. The purpose of this meta-analysis was to provide relative and absolute quantitative summary estimates with suff

  4. Genetic variants in three genes and smoking show strong associations with susceptibility to exudative age-related macular degeneration in a Chinese population

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Background The present study was undertaken to replicate the associations of representative polymorphisms in three genes (complement factor H (CFH), complement factor B (BF) and HtrA serine peptidase 1 (HTRA1)) with exudative age-related macular degeneration (AMD) in a Hart Chinese population, and to test if the modifiable environmental factors affect AMD susceptibility associated with different type of genotype in these genes. Methods An age, gender and ethnicity matched case-control study was conducted to genotype the representative single neucleotide polymorphisms (SNPs) loci including rs1061170 and rs1410996 in CFH, rs641153 and rs4151667 in BF and rs11200638 in HTRA1 gene in 144 exudative AMD patients and 126 normal controls using PCR-RFLP and directresequencing. The demographic characteristics and behavioral risk factors were also recorded. Allelic and genotypic associations for individual SNP and joint associations with two loci were performed. The gene-gene and gene-environment interactions were analyzed using multivariate non-conditional Logistic regression analysis. Results The C risk allele frequencies for CFH Y402H (rs1061170) in cases and controls were 12.5% and 5.4% respectively, which were much lower than those in Caucasians (P<0.001). Compared with TT homozygous genotype, the CT heterozygous genotype was positively associated with AMD with odds ratio (OR) of 3.23 (1.36-5.07). However, the population attributable risk (PAR) of C allele was only 3.3% (1.4%-4.3%). rs1410996 was also associated with AMD independent of Y402H. The ORs of exudative AMD for individuals carrying one copy risk allele and two copy risk alleles were 2.57 (1.21-5.45) and 4.76 (2.15-10.55) respectively, with correspondent PARs of 28.3% (2.0%-40.5%) and 38.2% (21.8%-45.4%). rs11200638 in HTRA1 was another susceptible locus for AMD and the risk homozygotes were significantly susceptible for exudutive AMD (OR=3.98, 1.88-8.43) with PAR of 38.9% (24.3%-45.8%). Education status and

  5. A common deletion in the uridine diphosphate glucuronyltransferase (UGT) 2B17 gene is a strong determinant of androgen excretion in healthy pubertal boys

    DEFF Research Database (Denmark)

    Juul, A; Sørensen, K; Aksglaede, L

    2008-01-01

    BACKGROUND: Testosterone (T) is excreted in urine as water-soluble glucuronidated and sulfated conjugates. The ability to glucuronidate T and other steroids depends on a number of different glucuronidases (UGT) of which UGT2B17 is essential. The aim of the study was to evaluate the influence of UGT......2B17 genotypes on urinary excretion of androgen metabolites in pubertal boys. STUDY DESIGN: A clinical study of 116 healthy boys aged 8-19 yr. UGT2B17 genotyping was performed using quantitative PCR. Serum FSH, LH, T, estradiol (E2), and SHBG were analyzed by immunoassays, and urinary levels...... of androgen metabolites were quantitated by gas chromatography/mass spectrometry in all subjects. RESULTS: Ten of 116 subjects (9%) presented with a homozygote deletion of the UGT2B17 gene (del/del), whereas 52 and 54 boys were hetero- and homozygous carriers of the UGT2B17 gene (del/ins and ins...

  6. A gene for plant protection: expression of a bean polygalacturonase inhibitor in tobacco confers a strong resistance against Rhizoctonia solani and two oomycetes.

    Directory of Open Access Journals (Sweden)

    Orlando eBorras-Hidalgo

    2012-12-01

    Full Text Available We have tested whether a gene encoding a polygalacturonase-inhibiting protein (PGIP protects tobacco against a fungal pathogen (Rhizoctonia solani and two oomycetes (Phytophthora parasitica var. nicotianae and Peronospora hyoscyami f. sp. tabacina. The trials were performed in greenhouse conditions for R. solani and P. parasitica and in the field for P. hyoscyami. Our results show that expression of PGIP is a powerful way of engineering a broad-spectrum disease resistance.

  7. The role of genealogy and clinical family histories in documenting possible inheritance patterns for diabetes mellitus in the pre-insulin era: part 2. Genealogic evidence for type 2 diabetes mellitus in Josephine Imperato's paternal and maternal lineages.

    Science.gov (United States)

    Imperato, Pascal James; Imperato, Gavin H

    2009-12-01

    Part 2 presents detailed genealogic information on Josephine Imperato's paternal and maternal lineages extending from four to seven generations into the nineteenth and eighteenth centuries. Among these lineages are some where early adult death over successive generations is perhaps indicative of type 2 diabetes mellitus (type 2 DM). These lineages, all in the town of San Prisco in Italy, include both paternal and maternal ones with the following surnames: Casaccia, Casertano, Cipriano, de Angelis, de Paulis, Peccerillo, Foniciello, di Monaco, Vaccarella, Valenziano, Ventriglia, and Zibella. Genealogic studies of eighteenth and nineteenth century vital records in this area of Italy cannot definitively establish type 2 diabetes mellitus as either an immediate or contributory cause of death. This is because causes of death were not recorded and because disease diagnostic capabilities were largely absent. Genealogic studies of those who lived in Italy in the eighteenth and nineteenth centuries can at best provide data on approximate age at time of death. Early adult death in this era was not uncommon. However, its presence over several successive generations in a lineage raises the possibility of inherited diseases prominent among which is type 2 DM.

  8. Representation, archaeology and genealogy: Three "spatial metaphors" for inquiring into nursing phenomena with Foucauldian discourse analysis.

    Science.gov (United States)

    Clinton, Michael E; Springer, Rusla Anne

    2017-02-14

    Foucault used the "Quadrilateral of Language" metaphor to describe how language functioned in what the French called the Classic Age, roughly 1650 to 1800, the period from Descartes to Kant. His purpose was to show how the functions of language changed radically with the arrival of the Modern Age (~1800). Foucault developed his archaeological methods to investigate the impact of this change, but later revised his methods to introduce genealogical strategies to conduct "histories of the present". Our purpose in this paper is to clarify Foucault's thinking about ruptures in the functions of language and to show their implications for analyzing nursing discourse. Our account provides an overview of radical changes in both the functions of language and in Foucault's analytical methods. Drawing on Foucault's "Quadrilateral of Language", his anthropological quadrilateral, and our spatialized conception of his genealogical methods, we critique advanced nursing practice (APN) discourse and invite others to inquire into nursing phenomena with spatialized thinking.

  9. Gene conversion is strongly induced in human cells by double-strand breaks and is modulated by the expression of BCL-XL

    Energy Technology Data Exchange (ETDEWEB)

    Wiese, Claudia; Pierce, Andrew J.; Gauny, Stacey S.; Jasin, Maria; Kronenberg, Amy

    2001-09-25

    Homology-directed repair (HDR) of DNA double-strand breaks (DSBs) is a well-established mechanism that contributes to the maintenance of genomic stability in rodent cells, and it has been assumed that HDR is of similar importance in the repair of DSBs in human cells. However, in addition to promoting genomic stability, some outcomes of homologous recombination can be deleterious, suggesting that factors exist to regulate HDR. We previously demonstrated that overexpression of BCL-2 or BCL-xL enhanced the frequency of x-ray-induced mutations involving the TK1 locus, including loss of heterozygosity (LOH) events presumed to arise by mitotic recombination. The present study was designed to test whether HDR is a prominent DSB repair pathway in human cells, and to directly determine whether ectopic expression of BCL-xL affects HDR. We used the B-lymphoblastoid cell line TK6, which expresses wild-type TP53 and resembles normal lymphocytes in undergoing apoptosis following! genotoxic stress. U sing isogenic derivatives of TK6 cells (TK6-neo, TK6-bcl-xL), we find that a DSB in an integrated HDR reporter stimulates gene conversion 40-50-fold in TK6-neo cells, demonstrating that a DSB can be efficiently repaired by gene conversion in human cells. Significantly, DSB-induced gene conversion events are 3- to 4-fold more frequent in BCL-xL overexpressing cells. The results demonstrate that HDR plays an important role in maintaining genomic integrity in human cells and that ectopic expression of BCL-xL enhances HDR of DSBs. To our knowledge, this is the first study to highlight a function for BCL-xL in modulating DSB repair in human cells.

  10. Problem Animals : A Critical Genealogy of Animal Cruelty and Animal Welfare in Swedish Politics 1844–1944

    OpenAIRE

    Svärd, Per-Anders

    2015-01-01

    Despite growing academic interest in the human–animal relationship, little research has been directed toward the political regulation of animal treatment. Even less attention has been accorded to the emergence of the long dominant paradigm in this policy area, namely, the ideology of animal welfare. This book attempts to address this gap by chronicling the early history of animal politics in Sweden with the aim of producing a critical, deconstructive genealogy of animal cruelty and animal wel...

  11. Who am I? Where did I Come from? Where do I go to Find out? Genealogy, the Internet and Tourism

    OpenAIRE

    Josiam, Bharath M.; Frazier, Richard

    2008-01-01

    Genealogists seek to answer the questions: Who am I? Where did I come from? Who were my ancestors? For answers, genealogists today use the Internet. However, genealogists still need to travel. Genealogy related tourism involves covering distances, studying places, and learning while traveling, while satisfying personal needs. Major questions of interest that this study researched were: Who are genealogists? What are their travel patterns and motivations? How has the Internet impacted their tr...

  12. Genetic genealogy reveals true Y haplogroup of House of Bourbon contradicting recent identification of the presumed remains of two French Kings.

    Science.gov (United States)

    Larmuseau, Maarten H D; Delorme, Philippe; Germain, Patrick; Vanderheyden, Nancy; Gilissen, Anja; Van Geystelen, Anneleen; Cassiman, Jean-Jacques; Decorte, Ronny

    2014-05-01

    Genetic analysis strongly increases the opportunity to identify skeletal remains or other biological samples from historical figures. However, validation of this identification is essential and should be done by DNA typing of living relatives. Based on the similarity of a limited set of Y-STRs, a blood sample and a head were recently identified as those belonging respectively to King Louis XVI and his paternal ancestor King Henry IV. Here, we collected DNA samples from three living males of the House of Bourbon to validate the since then controversial identification of these remains. The three living relatives revealed the Bourbon's Y-chromosomal variant on a high phylogenetic resolution for several members of the lineage between Henry IV and Louis XVI. This 'true' Bourbon's variant is different from the published Y-STR profiles of the blood as well as of the head. The earlier identifications of these samples can therefore not be validated. Moreover, matrilineal genealogical data revealed that the published mtDNA sequence of the head was also different from the one of a series of relatives. This therefore leads to the conclusion that the analyzed samples were not from the French kings. Our study once again demonstrated that in order to realize an accurate genetic identification of historical remains DNA typing of living persons, who are paternally or maternally related with the presumed donor of the samples, is required.

  13. 中国文学“神秘”谱系钩沉%Historical Genealogy about Chinese Literary "Mystery"

    Institute of Scientific and Technical Information of China (English)

    罗克凌

    2011-01-01

    中国文学中的"神秘"谱系相当浩瀚,其中古典"神秘"小说学系统有些薄弱,古典"神秘"诗学系统却相当发达,现当代"神秘"小说学系统曾一度遭到社会"集体无意识"的扼杀,现当代"神秘"诗学系统却内在地继承了古典"神秘"的精神而表现出强劲发展的态势,在中国文学"神秘"谱系中,时常伴有"神圣"因子的渗透与萌芽。%Historical genealogy of Chinese literature "mystery" is voluminous,of which the classical "mystery" of novel science system seems weak,that of poetics system is well developed.The modern and contemporary "mysterious" novel system was once being strangled,modern and contemporary "mysterious" poetics system is still strong by internally inheriting the classical literature.Chinese literature "mysterious" lineage often accompanied with the infiltration and budding of "sacred" factor.

  14. Sexualidad y prácticas sexuales contemporáneas en la genealogía del sujeto ético de Michel Foucault.Sexuality and contemporary sexual practices in the genealogy of the ethical subject of Michel Foucault.

    OpenAIRE

    2010-01-01

    Sexuality and contemporary sexual practices in the genealogy of the ethical subject of Michel Foucault. Resumen  La obra de Michel Foucault en sus tres momentos; la arqueología del saber, la genealogía del poder y la genealogía del sujeto ético, permiten pensar la sexualidad ya no como naturaleza humana sino como invento y construcción moderna que parte de discursos sociales, religiosos, políticos y científicos consolidándose en un dispositivo dinámico en el que está implicado el juego de los...

  15. Existe uma genealogia possível na psicanálise? Is there a possible genealogy in psychoanalysis?

    Directory of Open Access Journals (Sweden)

    Leonardo Danziato

    2009-12-01

    Full Text Available A partir da noção de "gozo", aqui considerada como um conceito e uma dimensão do campo da psicanálise, interroga-se a lógica estrutural deste campo, sugerindo-se a possibilidade de introduzir uma leitura também genealógica sobre o gozo e o corpo. Articulam-se algumas proposições psicanalíticas com uma genealogia foucaultiana, sugerindo, por fim, alguns momentos da obra de Lacan, em que se poderiam vislumbrar considerações genealógicas na construção dos conceitos psicanalíticos.Based on the idea of jouisance, here viewed both as a concept and as a dimension in the field of psychoanalysis, the author examines the structural logic of this field, suggesting the possibility of introducing an also genealogical reading about jouisance and the body. Some psychoanalytical propositions are linked to Foucault's genealogy, eventually suggesting that genealogical considerations in the construction of psychoanalytical concepts could be discerned at some moments in the work of Lacan.

  16. Analysis about the Genealogy Cultural of Haicheng Shang's%海城尚氏宗谱文化探析

    Institute of Scientific and Technical Information of China (English)

    王小梦

    2014-01-01

    海城尚氏祭祖自清初至今已有三百余年。平南王尚可喜于晚年开始着手编著尚氏宗谱,定祖训,及至尚王逝世,宗祠、陵园逐渐修建,尚氏家族的祭祖仪式逐日发展完善。随着时代的发展,尚氏家祭仪式也有所损益,宗谱文化与社会更加契合融汇,具有了更为广泛的文化内涵。%There has been more than three hundred years about the Haicheng Shang's ancestor worship since the beginning of Qing dy-nasty. The prince of Pacify south whose name is Shang Kexi in his old ages begin to write Shang's genealogy and make family lessons. Af-ter the prince's death, ancestral hall, and mausoleum is built gradually. The ceremony of Shang's ancestor worship is developed perfect day and day. Along with the development of the era, Shang's genealogy ceremony has the profit and loss, genealogy cultural associated with social more and more , and it has broader cultural connotations.

  17. 广州图书馆的家谱资源建设%Genealogy Resources Construction in Guangzhou Library

    Institute of Scientific and Technical Information of China (English)

    何映雯

    2014-01-01

    家谱与正史、方志是构成中华历史文献的三大支柱,它们从不同角度补充史实,使历史面貌、时代精神和社会风尚得以更真实、更全面的呈现,对历史学、人口学及社会学等学科的深入研究具有不可替代的独特功能。阐述了建设家谱资源的意义,探讨了广州图书馆在家谱资源的征集、整理、开发及服务方面所做的工作。%ABSTRACT:The genealogy, official history and chorography constitute the three pillars of Chinese historical documents, they supplement historical facts from different angles, making the historical appearance, time spirit and social custom get more real and more comprehensive presentation, and have an irreplaceable special function for the deep study of history, demography, sociology and other subjects. This paper expounds the significance of the construction of genealogy resources, and probes into the works that Guangzhou Library has done in aspects of genealogy resources’ collection, sorting, development, and service, etc.

  18. La extraña idea del desarrollo. Genealogía de un concepto

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo Maldonado

    2017-01-01

    Full Text Available Este artículo elabora una genealogía del concepto de desarrollo. Formulado originalmente por R. Prebisch (1950, el con- cepto sufre varias traducciones, extensiones y modi caciones que terminan asimilándolo a una idea perfectamente distinta. El sentido y el contexto originarios terminan transformándose. Así, el desarrollo termina siendo una apología del capitalismo. Después de una introducción histórica y cientí ca, el artículo desarrolla cuatro argumentos, así: el modelo de desarrollo es una idea extraña; esta idea se ve ampliada y extendida en términos de sostenibilidad; varias críticas, sin embargo, emergen y se ha- cen necesarias; consiguientemente, se hace posible e imperativo un modelo alternativo al desarrollo. Cada una de las secciones mencionadas son justi cadas en cada paso. Al nal se extraen algunas conclusiones, y el artículo termina con una idea fuerte que vincula bancarización y control ciudadano. Palabras clave: Historia de la economía, filosofía de la economía, capitalismo, economía política Abstract This paper carries out a genealogy of the concept of development. Originally stated out by R. Prebisch (1950, the concept su ers a number of translations, extension, and changes that end up with a quite di erent idea than it was originally thought. Both the meaning and framework end up being radically changed. us, development ends as an apology to capitalism. A er a short historical and philosophical introduction, this paper develops four arguments, as follows: the model of economic de- velopment is a weird idea; such an idea is both extended and widened in terms of sustainability; a number of critiques merge, though, that are necessary and feasible; therea er, an alternative model of development becomes at the same time possible and compulsory. Each one of the mentioned paragraphs are justi ed in due time. At the end some conclusions are drawn, ad the paper ends with a string idea that

  19. Strong resistance against Rice grassy stunt virus is induced in transgenic rice plants expressing double-stranded RNA of the viral genes for nucleocapsid or movement proteins as targets for RNA interference.

    Science.gov (United States)

    Shimizu, Takumi; Ogamino, Takumi; Hiraguri, Akihiro; Nakazono-Nagaoka, Eiko; Uehara-Ichiki, Tamaki; Nakajima, Masami; Akutsu, Katsumi; Omura, Toshihiro; Sasaya, Takahide

    2013-05-01

    Rice grassy stunt virus (RGSV), a member of the genus Tenuivirus, causes significant economic losses in rice production in South, Southeast, and East Asian countries. Growing resistant varieties is the most efficient method to control RGSV; however, suitable resistance genes have not yet been found in natural rice resources. One of the most promising methods to confer resistance against RGSV is the use of RNA interference (RNAi). It is important to target viral genes that play important roles in viral infection and proliferation at an early stage of viral replication. Our recent findings obtained from an RNAi experiment with Rice stripe virus (RSV), a tenuivirus, revealed that the genes for nucleocapsid and movement proteins were appropriate targets for RNAi to confer resistance against RSV. In this study, we transformed rice plants by introducing an RNAi construct of the RGSV genes for the nucelocapsid protein pC5 or movement protein pC6. All progenies from self-fertilized transgenic plants had strong resistance against RGSV infection and did not allow the proliferation of RGSV. Thus, our strategy to target genes for nucleocapsid and movement proteins for conferring viral resistance might be applicable to the plant viruses in the genus Tenuivirus.

  20. Splenomegaly, elevated alkaline phosphatase and mutations in the SRSF2/ASXL1/RUNX1 gene panel are strong adverse prognostic markers in patients with systemic mastocytosis.

    Science.gov (United States)

    Jawhar, M; Schwaab, J; Hausmann, D; Clemens, J; Naumann, N; Henzler, T; Horny, H-P; Sotlar, K; Schoenberg, S O; Cross, N C P; Fabarius, A; Hofmann, W-K; Valent, P; Metzgeroth, G; Reiter, A

    2016-12-01

    We evaluated the impact of clinical and molecular characteristics on overall survival (OS) in 108 patients with indolent (n=41) and advanced systemic mastocytosis (SM) (advSM, n=67). Organomegaly was measured by magnetic resonance imaging-based volumetry of the liver and spleen. In multivariate analysis of all patients, an increased spleen volume ⩾450 ml (hazard ratio (HR), 5.2; 95% confidence interval (CI), (2.1-13.0); P=0.003) and an elevated alkaline phosphatase (AP; HR 5.0 (1.1-22.2); P=0.02) were associated with adverse OS. The 3-year OS was 100, 77, and 39%, respectively (P<0.0001), for patients with 0 (low risk, n=37), 1 (intermediate risk, n=32) or 2 (high risk, n=39) parameters. For advSM patients with fully available clinical and molecular data (n=60), univariate analysis identified splenomegaly ⩾1200 ml, elevated AP and mutations in the SRSF2/ASXL1/RUNX1 (S/A/R) gene panel as significant prognostic markers. In multivariate analysis, mutations in S/A/R (HR 3.2 (1.1-9.6); P=0.01) and elevated AP (HR 2.6 (1.0-7.1); P=0.03) remained predictive adverse prognostic markers for OS. The 3-year OS was 76 and 38%, respectively (P=0.0003), for patients with 0-1 (intermediate risk, n=28) or 2 (high risk, n=32) parameters. We conclude that splenomegaly, elevated AP and mutations in the S/A/R gene panel are independent of the World Health Organization classification and provide the most relevant prognostic information in SM patients.

  1. Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan

    Science.gov (United States)

    Lkhagvasuren, Gavaachimed; Shin, Heejin; Lee, Si Eun; Tumen, Dashtseveg; Kim, Jae-Hyun; Kim, Kyung-Yong; Kim, Kijeong; Park, Ae Ja; Lee, Ho Woon; Kim, Mi Jin; Choi, Jaesung; Choi, Jee-Hye; Min, Na Young

    2016-01-01

    Members of the Mongol imperial family (designated the Golden family) are buried in a secret necropolis; therefore, none of their burial grounds have been found. In 2004, we first discovered 5 graves belonging to the Golden family in Tavan Tolgoi, Eastern Mongolia. To define the genealogy of the 5 bodies and the kinship among them, SNP and/or STR profiles of mitochondria, autosomes, and Y chromosomes were analyzed. Four of the 5 bodies were determined to carry the mitochondrial DNA haplogroup D4, while the fifth carried haplogroup CZ, indicating that this individual had no kinship with the others. Meanwhile, Y-SNP and Y-STR profiles indicate that the males examined belonged to the R1b-M343 haplogroup. Thus, their East Asian D4 or CZ matrilineal and West Eurasian R1b-M343 patrilineal origins reveal genealogical admixture between Caucasoid and Mongoloid ethnic groups, despite a Mongoloid physical appearance. In addition, Y chromosomal and autosomal STR profiles revealed that the four D4-carrying bodies bore the relationship of either mother and three sons or four full siblings with almost the same probability. Moreover, the geographical distribution of R1b-M343-carrying modern-day individuals demonstrates that descendants of Tavan Tolgoi bodies today live mainly in Western Eurasia, with a high frequency in the territories of the past Mongol khanates. Here, we propose that Genghis Khan and his family carried Y-haplogroup R1b-M343, which is prevalent in West Eurasia, rather than the Y-haplogroup C3c-M48, which is prevalent in Asia and which is widely accepted to be present in the family members of Genghis Khan. Additionally, Tavan Tolgoi bodies may have been the product of marriages between the lineage of Genghis Khan’s Borjigin clan and the lineage of either the Ongud or Hongirad clans, indicating that these individuals were members of Genghis Khan’s immediate family or his close relatives. PMID:27627454

  2. GeneRecon—A coalescent based tool for fine-scale association mapping

    DEFF Research Database (Denmark)

    Mailund, Thomas; Schierup, Mikkel Heide; Pedersen, Christian Nørgaard Storm

    2006-01-01

    GeneRecon is a tool for fine-scale association mapping using a coalescence model. GeneRecon takes as input case-control data from phased or unphased SNP and micro-satellite genotypes. The posterior distribution of disease locus position is obtained by Metropolis Hastings sampling in the state space...... of genealogies. Input format, search strategy, and the sampled statistics can be configured through the Guile Scheme programming language embedded in GeneRecon, making GeneRecon highly configurable....

  3. Urokinase receptor mRNA level and gene transcription are strongly and rapidly increased by phorbol myristate acetate in human monocyte-like U937 cells

    DEFF Research Database (Denmark)

    Lund, L R; Rønne, E; Roldan, A L;

    1991-01-01

    We have studied the effect of the tumor promotor phorbol myristate acetate (PMA) on the level of mRNA for the receptor for urokinase-type plasminogen activator (u-PAR) in the human monocyte-like cell line U937. PMA causes an early increase in the u-PAR mRNA level which reaches a maximal 50-fold...... enhancement after 24 h of treatment. Half-maximal stimulation occurs at approximately 5 nM PMA. The effect is observed only with phorbol esters that also act as tumor promotors. The protein synthesis inhibitor cycloheximide (10 micrograms/ml) also increases the level of u-PAR mRNA. Nuclear run-on experiments...... show a time-dependent increase in the u-PAR gene transcription rate after exposure of the cells to PMA. The PMA-induced increase in u-PAR mRNA is paralleled by a time-dependent increase in u-PAR protein as detected by cross-linking studies with radiolabeled ligand. We conclude that PMA stimulates...

  4. The most common mutation causing medium-chain acyl-CoA dehydrogenase deficiency is strongly associated with a particular haplotype in the region of the gene

    DEFF Research Database (Denmark)

    Kølvraa, S; Gregersen, N; Blakemore, A I;

    1991-01-01

    RFLP haplotypes in the region containing the medium-chain acyl-CoA dehydrogenase (MCAD) gene on chromosome 1 have been determined in patients with MCAD deficiency. The RFLPs were detected after digestion of patient DNA with the enzymes BanII. PstI and TaqI and with an MCAD cDNA-clone as a probe....... Of 32 disease-causing alleles studied, 31 possessed the previously published A----G point-mutation at position 985 of the cDNA. This mutation has been shown to result in inactivity of the MCAD enzyme. In at least 30 of the 31 alleles carrying this G985 mutation a specific RFLP haplotype was present....... In contrast, the same haplotype was present in only 23% of normal alleles (P less than or equal to 3.4 x 10(-18)). These findings are consistent with the existence of a pronounced founder effect, possibly combined with biological and/or sampling selection....

  5. Strong increase of foliar inulin occurs in transgenic lettuce plants (Lactuca sativa L.) overexpressing the Asparagine Synthetase A gene from Escherichia coli.

    Science.gov (United States)

    Sobolev, Anatoli P; Segre, Anna L; Giannino, Donato; Mariotti, Domenico; Nicolodi, Chiara; Brosio, Elvino; Amato, Maria E

    2007-12-26

    Transgenic lettuce (Lactuca sativa L. cv. 'Cortina') lines expressing the asparagine synthetase A gene from Escherichia coli were produced to alter the plant nitrogen status and eventually enhance growth. The relative molecular abundance of water-soluble metabolites was measured by 1H NMR in transgenic and conventional plants at early developmental stages and grown under the same conditions. NMR metabolic profiles assessed that a transgenic line and the wild-type counterpart shared the same compounds, but it also revealed side effects on the carbon metabolism following genetic modification. Concerning the nitrogen status, the amino acid content did not vary significantly, except for glutamic acid and gamma-aminobutyric acid, which diminished in the transgenics. As for the carbon metabolism, in transgenic leaves the contents of sucrose, glucose, and fructose decreased, whereas that of inulin increased up to 30 times, accompanied by the alteration of most Krebs's cycle organic acids and the rise of tartaric acid compared to nontransformed controls. Lettuce leaf inulins consisted of short oligomeric chains made of one glucose unit bound to two/four fructose units. Inulins are beneficial for human health, and they are extracted from plants and commercialized as long-chain types, whereas the short forms are synthesized chemically. Hence, lettuce genotypes with high content of foliar short-chain inulin represent useful materials for breeding strategies and a potential source for low molecular weight inulin.

  6. Problematizing special observation in psychiatry: Foucault, archaeology, genealogy, discourse and power/knowledge.

    Science.gov (United States)

    Stevenson, C; Cutcliffe, J

    2006-12-01

    Special observation by mental health professionals is the recommended approach for those people deemed as at risk or risky. Recent research and academic writing have challenged the benefits of observing people/patients who are defined as 'at risk', and a more human engagement process is being recommended. Despite this assault, practice has not changed substantively, suggesting a need for a thorough exploration and questioning of the practices and process. The paper outlines three Foucaultian approaches to historical analysis. It applies aspects of Foucault's archaeology/genealogy, discourse and power/knowledge to explore the practices of special observation as a means of controlling risk, especially suicide risk. We identify the regulatory function of the 'gaze', professional codes and government policy in relation to restricting professional practices. We argue that observation can be related to moral therapy, wherein the person relinquishes madness for responsibility through a disciplinary process and, in governing risk, a 'professional industry' is created. The regulation of statements about people with mental health issues are exposed and related to what can be said and done by professionals. Finally, we look at productive power in relation to observation, and how it is intimately related to resistance. We conclude with 'soft' recommendations for practice discursively produced through the writing of the paper.

  7. Tinjauan Perspektif Intelegensia Muslim terhadap Genealogi Kelas Menengah Muslim di Indonesia

    Directory of Open Access Journals (Sweden)

    Wasisto Raharjo Jati

    2015-09-01

    Full Text Available This article aims to analyze genealogies of Muslim middle class in Indonesia. It can be traced from three primary sources such as bourgeoisies, pilgrimage trip (h}ajj to Mecca and Medina, and education. These three sources have intertwined each other to build up Muslim middle class in social strata system that branch off in two model; bourguoises class and intellectual class. In this section, bourguoises tends to form trade alliance against Chinese domaniance and western traders who had been given privilieges from colonial regime. Meanwhile, intellectual class had focused to form ideal state for umat in Indonesia. Both classes are united altogether to form Islamic state as ultimate goals. High tension of political constellation in post colonial period had resulted in nationalist group as regulator class in Indonesia. Regarding political negotiation from nationalist, Indonesian Muslim middle class focused to establish Muslim society according to Medinan principles. Modern influence based on western style has affected Islamic values in grass roots level, and this resulted in the rise of modern Muslim society that embraced western style of life.

  8. Wealhtheow’s Peace-Weaving: Diegesis and Genealogy of Gender in Beowulf

    Directory of Open Access Journals (Sweden)

    Olesiejko Jacek

    2014-03-01

    Full Text Available This article uses Charles S. Peirce’s concept of icon and Judith Butler’s idea of genealogy of gender to study levels of fictionality in the Old English poem Beowulf. It shows that Wealhtheow, the principal female character in the epic, operates as a diegetic reader in the poem. Her speeches, in which she addresses her husband King Hrothgar and Beowulf contain implicit references to the Lay of Finn, which has been sung by Hrothgar’s minstrel at the feast celebrating Beowulf’s victory. It is argued here that Wealhtheow represents herself as an icon of peace-weaving, as she casts herself as a figuration of Hildeburh, the female protagonist of the Lay of Finn. Hildeburh is the sister of Hnæf, the leader of the Danes, and is given by her brother to Finn the Frisian in a marriage alliance. In her role as a peace-weaver, the queen is to weave peace between tribes by giving birth to heirs of the crown. After the courtly minster’s performance of the Lay, Wealhtheow warns her husband against establishing political alliances with the foreigner Beowulf at the expense of his intratribal obligation to his cousin Hrothulf, who is to become king after Hrothgar’s death.

  9. A genealogy of the social identity tradition: Deleuze and Guattari and social psychology.

    Science.gov (United States)

    Brown, Steven D; Lunt, Peter

    2002-03-01

    This paper explores how social psychology has theorized the relationship between the individual and society. This is done through a genealogical analysis of the Social Identity Tradition (SIT). It is argued that the current state of SIT is profoundly shaped by a range of intellectual and moral strategies derived from the work of Henri Tajfel. This 'Tajfel effect' manifests itself as a way of settling theoretical, practical and moral disputes through the invocation of Tajfel as a founding figure. However, this strategy also ties SIT into a model of the subject and an understanding of society that is increasingly seen as problematic. The paper then goes on to show how a range of core concepts at the heart of SIT may be usefully reformulated by drawing on the work of Deleuze and Guattari. Their work offers SIT a way of thinking about individuals and groups as sites for connection and differentiation. This is illustrated using the example of Nazi social relations that was originally deployed by Tajfel. Potential issues and direction for SIT as reinvigorated by the encounter with Deleuze and Guattari are then sketched out.

  10. Empirical and genealogical analysis of non-vocational adult education in Europe

    Science.gov (United States)

    Manninen, Jyri

    2017-06-01

    Non-formal, non-vocational adult education (NFNVAE) is a low-cost, low-threshold learning activity that generates many benefits for individuals and society, and it should play a more central role in educational policy. NFNVAE's challenge is that it lacks clear concepts and definitions and is, therefore, less systematically covered in statistics, research and surveys. This article seeks to tackle these problems by providing (1) a mapping of NFNVAE courses in 10 European countries and (2) a conceptual framework for NFNVAE. The mapping is based on survey data ( n = 8,646) that contain information on 14,063 courses, which were coded into 24 categories and three general types: civic, liberal and basic skills education. Popular adult education courses (in the radical meaning of the term) were not found among these data; therefore, further mapping is needed. The genealogical analysis shows that ideological discourses and cultural practices should be taken into account when different concepts are used to describe NFNVAE. Especially the concept "popular" needs more clarification, since it is frequently used to refer to several different traditions, for example the Nordic " folkbildning", which is a civic education system, and therefore differs from Latin American popular adult education, which is a radical, non-governmental movement.[Figure not available: see fulltext.

  11. Solar system genealogy revealed by extinct short-lived radionuclides in meteorites

    CERN Document Server

    Gounelle, Matthieu; 10.1051/0004-6361/201219031

    2012-01-01

    Little is known about the stellar environment and the genealogy of our solar system. Short-lived radionuclides (SLRs, mean lifetime shorter than 100 Myr) that were present in the solar protoplanetary disk 4.56 Gyr ago could potentially provide insight into that key aspect of our history, were their origin understood. Previous models failed to provide a reasonable explanation of the abundance of two key SLRs, 26Al (mean lifetime = 1.1 Myr) and 60Fe (mean lifetime = 3.7 Myr), at the birth of the solar system by requiring unlikely astrophysical conditions. Our aim is to propose a coherent and generic solution based on the most recent understanding of star-forming mechanisms. Iron-60 in the nascent solar system is shown to have been produced by a diversity of supernovae belonging to a first generation of stars in a giant molecular cloud. Aluminum-26 is delivered into a dense collected shell by a single massive star wind belonging to a second star generation. The Sun formed in the collected shell as part of a thir...

  12. Neurotree: a collaborative, graphical database of the academic genealogy of neuroscience.

    Science.gov (United States)

    David, Stephen V; Hayden, Benjamin Y

    2012-01-01

    Neurotree is an online database that documents the lineage of academic mentorship in neuroscience. Modeled on the tree format typically used to describe biological genealogies, the Neurotree web site provides a concise summary of the intellectual history of neuroscience and relationships between individuals in the current neuroscience community. The contents of the database are entirely crowd-sourced: any internet user can add information about researchers and the connections between them. As of July 2012, Neurotree has collected information from 10,000 users about 35,000 researchers and 50,000 mentor relationships, and continues to grow. The present report serves to highlight the utility of Neurotree as a resource for academic research and to summarize some basic analysis of its data. The tree structure of the database permits a variety of graphical analyses. We find that the connectivity and graphical distance between researchers entered into Neurotree early has stabilized and thus appears to be mostly complete. The connectivity of more recent entries continues to mature. A ranking of researcher fecundity based on their mentorship reveals a sustained period of influential researchers from 1850-1950, with the most influential individuals active at the later end of that period. Finally, a clustering analysis reveals that some subfields of neuroscience are reflected in tightly interconnected mentor-trainee groups.

  13. Genealogical Position of Ugaritic: the Lexical Dimension. Lexical Isoglosses Between Ugaritic and Canaanite

    Directory of Open Access Journals (Sweden)

    Kogan, Leonid

    2010-06-01

    Full Text Available The present contribution continues a series of publications by the author dealing with the lexical evidence for some of the much-discussed problems of the genealogical subgrouping of Semitic. In the present article, specific isoglosses between Ugaritic and the Canaanite languages (notably, Hebrew and Phoenician are accumulated and discussed, their total number amounting to ca. 80 lexical items. In the second, concluding article (scheduled for publication in the forthcoming issue of Sefarad, this evidence will be compared with specific lexical isoglosses shared by Ugaritic with Semitic languages other than Canaanite.

    El presente artículo forma parte de una serie de publicaciones del autor dedicadas al factor léxico en la clasificación genealógica de las lenguas semíticas. Poco menos de 80 isoglosas exclusivas entre ugarítico y las lenguas cananeas (en particular, hebreo y fenicio, presentadas en el orden alfabético y acompañadas de una discusión general tanto lingüística como filológica, constituyen el núcleo del artículo, que va a ser complementado próximamente por un análisis detallado de posibles isoglosas léxicas entre la lengua ugarítica y las lenguas semíticas no pertenecientes al grupo cananeo.

  14. Pareto genealogies arising from a Poisson branching evolution model with selection.

    Science.gov (United States)

    Huillet, Thierry E

    2014-02-01

    We study a class of coalescents derived from a sampling procedure out of N i.i.d. Pareto(α) random variables, normalized by their sum, including β-size-biasing on total length effects (β < α). Depending on the range of α we derive the large N limit coalescents structure, leading either to a discrete-time Poisson-Dirichlet (α, -β) Ξ-coalescent (α ε[0, 1)), or to a family of continuous-time Beta (2 - α, α - β)Λ-coalescents (α ε[1, 2)), or to the Kingman coalescent (α ≥ 2). We indicate that this class of coalescent processes (and their scaling limits) may be viewed as the genealogical processes of some forward in time evolving branching population models including selection effects. In such constant-size population models, the reproduction step, which is based on a fitness-dependent Poisson Point Process with scaling power-law(α) intensity, is coupled to a selection step consisting of sorting out the N fittest individuals issued from the reproduction step.

  15. A Genealogy of Moderate Islam: Governmentality and Discourses of Islam in Indonesia’s Foreign Policy

    Directory of Open Access Journals (Sweden)

    Ahmad Rizky Mardhatillah Umar

    2016-12-01

    Full Text Available This article analyses the political construction of ‘Moderate Islam Discourse’ in contemporary Indonesian Foreign Policy. Since 2004, the Indonesian Ministry of Foreign Affairs has campaigned for ‘Moderate Islam’ as the main image of Indonesian Islam. Within this discourse, Islam is conceived as ‘moderate’ and ‘tolerant’ as well as inherently compatible with democracy. However, in a more critical perspective, ‘Moderate Islam’’ also contains a political and discursive construction. By using a genealogical approach, I argue that the articulation Islam in Indonesia’s foreign policy is influenced by the ideological underpinnings of each political regime as well as the hegemonic discourse operating in international politics. Furthermore, I argue that there have been three discourses of Islam in Indonesia’s foreign policy, as articulated by different political regimes, namely (1 Islam as religious identity; (2 Moderate Islam from below; and (3 Moderate Islam as a part of the Global War on Terror project.DOI: 10.15408/sdi.v23i3.3157

  16. Vietnam and the Pax Americana: A Genealogy of the “New World Order”

    Directory of Open Access Journals (Sweden)

    William V. Spanos

    2015-03-01

    Full Text Available William V. Spanos’s chapter “Vietnam and the Pax Americana: A Genealogy of the ‘New World Order’” was originally published in his book-length study entitled America’s Shadow: An Anatomy of Empire (1999 and is here reprinted, courtesy of the University of Minnesota Press. Spanos’s prescient, unrelenting, and wide-ranging analysis of the consequences of the Vietnam War argues that the contemporary moment—including the Gulf War, Operation Hope in Somalia, American interventions in Bosnia and Kosovo, for example—has its “provenance” in the Vietnam War, yet the Vietnam War has essentially been underanalyzed and forgotten under the anesthetic of the American amnesiac condition, which perpetuates, systematically, an interpretation and misrepresentation of American exceptionalism and imperialism. Spanos’s philosophically informed interpretation of Vietnam Era literature, as well as other mediated representations of war, suggests that the Derridean specter haunts the “triumphalist” American representation of the post–Cold War reality, the New World Order or “Pax Americana,” and that the various politically correct theories that predict the decline of the nation-state or that celebrate the rise of American multicultural democracy will have mostly been the blind leading the blind toward a misapprehension of the global phenomenon of American hegemony.

  17. Queer – Genealogie eines problematischen Begriffs Queer—Genealogy of a troublemaking term

    Directory of Open Access Journals (Sweden)

    Birgit Müller

    2002-03-01

    Full Text Available Jagoses Einführung in die Queer Theory ist in erster Linie eine Genealogie des Begriffs ‚queer‘. Über den historischen Kontext von Homophilenbewegung, Homobefreiungsbewegung und lesbischem Feminismus in den USA fragt sie nach den Entstehungsbedingungen, die Queer Theory hervorgebracht haben und zeichnet die Kontinuitäten und Brüche in der Bedeutungsgeschichte von queer nach. Sie setzt sich mit den poststrukturalistischen Wurzeln von Queer Theory auseinander und diskutiert das emanzipatorische Potential ihrer theoretischen und politischen Aspekte. Die deutsche Ausgabe ergänzt das Werk um ein umfangreiches Nachwort, in dem u. a. auf die Rezeption von Queer Theory in der BRD eingegangen wird.Jagoses’s introduction to queer theory presents primarily a genealogy of the term ‘queer’. Ranging from the historical context of homophile movements and gay-liberation movements to lesbian feminism in the United States Jagose investigates the conditions which have produced Queer Theory and traces the continuities and discontinuities of the semiotic history of the term ‘queer’. She discusses the poststructural roots of queer theory and discusses the emancipatory potential of its theoretical and political aspects. An extensive epilogue with notes on the reception of Queer Theory in the FRG has been added to the German edition.

  18. The Astronomy Genealogy Project: It's more than just tracing your ancestry

    Science.gov (United States)

    Tenn, Joseph S.; AstroGen Team

    2017-01-01

    The Astronomy Genealogy Project ("AstroGen"), a project of the Historical Astronomy Division (HAD), will soon appear on the AAS website (https://astrogen.aas.org/). Ultimately, it will list the world's astronomers with their highest degrees, titles of theses for those who wrote them, academic advisors, universities, and links to the astronomers or their obituaries, their theses when online, and more. At present the AstroGen team is working on those who earned doctorates with astronomy-related theses. We show what can be learned already, with twelve countries essentially complete and about 19,000 theses recorded. For the twelve countries—Australia, Canada, Chile, Ireland, the Netherlands, New Zealand, Norway, South Africa, Spain, Sweden, the United Kingdom, and the United States—half of the theses have been submitted since 1999, and more than 60% are online. We will present information comparing countries, universities, and eras. Nearly all information has been gathered online, and there is much more available. We are seeking people with knowledge of the languages and academic cultures of other countries to join us.

  19. Intronic Polymorphisms in the CDKN2B-AS1 Gene Are Strongly Associated with the Risk of Myocardial Infarction and Coronary Artery Disease in the Saudi Population

    Directory of Open Access Journals (Sweden)

    Sayed AbdulAzeez

    2016-03-01

    Full Text Available Recent genome-wide association studies identified single nucleotide polymorphisms (SNPs on the chromosome 9p21.3 conferring the risk for CAD (coronary artery disease in individuals of Caucasian ancestry. We performed a genetic association study to investigate the effect of 12 candidate SNPs within 9p21.3 locus on the risk of CAD in the Saudi population of the Eastern Province of Saudi Arabia. A total of 250 Saudi CAD patients who had experienced an myocardial infarction (MI and 252 Saudi age-matched healthy controls were genotyped using TaqMan assay. Controls with evidenced lack of CAD provided 90% of statistical power at the type I error rate of 0.05. Five percent of the results were rechecked for quality control using Sanger sequencing, the results of which concurred with the TaqMan genotyping results. Association analysis of 12 SNPs indicated a significant difference in the genotype distribution for four SNPs between cases and controls (rs564398 p = 0.0315, χ2 = 4.6, odds ratio (OD = 1.5; rs4977574 p = 0.0336, χ2 = 4.5, OD = 1.4; rs2891168 p = 1.85 × 10 − 10, χ2 = 40.6, OD = 2.1 and rs1333042 p = 5.14 × 10 − 9, χ2 = 34.1, OD = 2.2. The study identified three protective haplotypes (TAAG p = 1.00 × 10 − 4; AGTA p = 0.022 and GGGCC p = 0.0175 and a risk haplotype (TGGA p = 2.86 × 10 − 10 for the development of CAD. This study is in line with others that indicated that the SNPs located in the intronic region of the CDKN2B-AS1 gene are associated with CAD.

  20. 基于强基因模式组织算法的VRPTW研究%Research on vehicle routing problem with time window based on strong gene schema .combination algorithm

    Institute of Scientific and Technical Information of China (English)

    汪勇; 杨海琴; 张瑞军

    2011-01-01

    提出一种强基因模式组织算法,给出了强基因模式、连续模式以及对称模式的定义,使用节约法提取强基因模式.设计了选择、变异和模式重组算子,同时建立了以运输成本为目标、具有时间窗等约束的车辆路径问题模型.将该算法与改进的遗传算法、改进的差分进化算法和节约法对模型进行仿真实验.结果表明,强基因模式的应用及模式重组算子大大缩小了解的搜索空间,提高了算法的收敛速度和解的精度,其性能优于其他3种算法.%A method named strong gene schema combination algorithm(GSCA) is proposed based on evolutionary algorithm, which gives the definitions of strong gene schema, continuous schema and symmetrical schema. Then the strong gene schemas are extracted by using saving algorithm. Operators of selection, mutation and schema recombination are designed. At the same time, the mathematical model of vehicle routing problem is established with the goal of transportation cost and the restraints of customer requirements, truckload ability and time window(VRPTW). The effect of GSCA compared with improved genetic algorithm(IGA), improved differential evolution algorithm(IDEA) and saving algorithm(SA) for capturing the global optimum is tested on the VRPTW model in Matlab. The results show that the application of strong gene schema and the operator of schema recombination reduce the number of searches greatly within the solution space and enhance the convergence capability and the precision of the solution, and its performance is demonstrated better than the compared three algorithms.

  1. Review; Ønulf Gulbrandsen, The State and the Social: State Formation in Botswana and Its Precolonial and Colonial Genealogies (2012 Buchbesprechung: Ønulf Gulbrandsen, The State and the Social: State Formation in Botswana and Its Precolonial and Colonial Genealogies (2012

    Directory of Open Access Journals (Sweden)

    Reinhart Kößler

    2013-01-01

    Full Text Available Review of the monograph:Ønulf Gulbrandsen, The State and the Social: State Formation in Botswana and Its Precolonial and Colonial Genealogies, New York and Oxford: Berghahn, 2012, ISBN 9780857452979, 343 pagesBesprechung der Monographie:Ønulf Gulbrandsen, The State and the Social: State Formation in Botswana and Its Precolonial and Colonial Genealogies, New York and Oxford: Berghahn, 2012, ISBN 9780857452979, 343 Seiten

  2. Analysis of the Research Status and Value of the Bai Genealogy%白族家谱研究现状及价值探析

    Institute of Scientific and Technical Information of China (English)

    何俊伟

    2014-01-01

    Since the 1980s,studies on Bai genealogical aspects have been fruity including the collection of Bai genealogy, genealogical directories,genealogical and historical value,and the applied research of ethnic origins,names of Halls,the patronymic linkage naming system,the family ethnics. But there is still a big gap in the genealogical research between home and abroad,mainly the genealogy is stored in different places,historical documents are not well organized; Also outdated research,poor investment on research,single research direction etc. however,it has important documental value to strengthen the research on Bei genealogy. Not only can it add up some historical data,but also provides some new material of history for the study of ethnic history in the Southwest of China. Based on the research results,this paper classifies genealogy,analyzes the inadequacy of existing research,and summarizes research value of Bao genealogy.%20世纪80年代以来,白族家谱在家谱的调查收集、目录、家谱介绍及史料价值等基础研究和族源、堂号、父子连名制、家庭道德等应用研究方面取得了一些成果,但与国内外家谱研究相比仍存在很大差距,主要表现在家谱收藏分散、史料挖掘整理不够;研究滞后、力量薄弱;研究方向单一等问题。而加强对白族家谱的研究不仅可弥补白族史料的不足,也可为西南民族史的研究提供新的史料,具有重要的文献价值和现实意义。

  3. Sobre la vitalidad del poder: Una genealogía de la biopolítica a partir de Foucault y Canguilhem The Vitality of Power: A Genealogy of Biopolitics with Foucault and Canguilhem

    Directory of Open Access Journals (Sweden)

    MARIA MUHLE

    2009-01-01

    Full Text Available Este texto propone una genealogía de la biopolítica a partir del pensamiento de Michel Foucault y en tanto que noción filosófico-polltica, para lo cual parte no sólo de la noción de política, sino también y principalmente de la de vida. La hipótesis del texto es la siguiente: Para entender lo que biopolítica significa hay que tomar en serio el constato por parte de Foucault de una noción de vida indeterminada que es correlato de las técnicas de poder-saber. Esta noción de vida surge en la ruptura epistémica en torno a 1800, y lleva a una apertura de la noción de biopolítica bajo el nombre de gubernamentalidad, en tanto que la vida no es sólo el objeto de la biopolítica, sino que también le sirve de modelo para su funcionamiento.This text proposes a genealogy of biopolitics based on Michel Foucault's thought, and on an understanding of it as a philosophico-political notion. In order to elaborate this genealogy, the text takes as its starting point not only politics but also life, as the second component of the term. The hypothesis is the following: To understand what biopolitics means, we have to take seriously Foucault's assertion of an indetermination of life, as the correlate of power and knowledge. This notion emerges in the epistemic break that takes place around 1800 and that entails the opening up of the notion of biopolitics under the name of govemmentality, implying that life is not only the object of biopolitics but also serves as its model.

  4. An Introduction to Huizhou Genealogy Collected in the Library of Huangshan University%黄山学院图书馆馆藏徽州家谱简介

    Institute of Scientific and Technical Information of China (English)

    陈玲; 冯剑辉

    2012-01-01

    The library of Huangshan University is one of the collection units that have collected a large number of Huizhou genealogies.The Huizhou genealogies collected by Huangshan University include some rare editions which are rich in content but not fully explored.Therefore,they are worth attention from researchers on Huizhou and Chinese genealogy.%黄山学院图书馆是国内收藏徽州家谱数量较多的单位之一,其家谱中包括一定数量的善本和罕见本,资料丰富,尚未得到有效运用,值得引起徽学与谱学研究者的重视。

  5. Cardeña, Pedro de Barcelos y la Genealogía del Cid

    Directory of Open Access Journals (Sweden)

    Francisco Bautista

    2011-07-01

    Full Text Available Este trabajo se centra en un texto genealógico sobre el Cid para el que contamos con el testimonio publicado por Juan de Velorado, abad de Cardeña, dentro de los apéndices a la Crónica particular del Cid (1512, y trata de rastrear sus huellas en algunos textos medievales, en particular en las obras de Pedro de Barcelos. Las coincidencias que se registran entre estos textos, que afectan a asuntos o episodios como el linaje del Cid, los Jueces de Castilla o la leyenda de los Infantes de Lara, y la alusión de don Pedro a una crónica de Cardeña permiten concluir que una versión anterior de la genealogía cidiana publicada por el abad de Cardeña fue conocida por el autor portugués. Después de señalar brevemente algunas posibles implicaciones de la localización de esta fuente para el análisis de los pasajes de Pedro de Barcelos en que fue usada, se exploran los rasgos más importantes de la genealogía cardeñense del Cid, el contexto en que pudo llevarse a cabo su redacción original, su significado y algunos aspectos de la actualización posterior.L’étude qui est ici présentée est consacrée à un texte généalogique concernant le Cid, publié par Jean de Velorado, abbé de Cardeña, dans les appendices de la Chronique particulière du Cid (1512 ; elle en suit les traces dans quelques textes médiévaux, et en particulier dans les œuvres de Pierre de Barcelos. Les ressemblances constatées entre ces textes dans le traitement de certains épisodes comme la généalogie du Cid, les juges de  Castille ou la légende des infants de Lara, ainsi que l’allusion faite par Pierre de Barcelos à une chronique de Cardeña, permettent de conclure que le comte eut connaissance d’une version antérieure de la généalogie cidienne. Après avoir montré brièvement les enjeux de la localisation de cette source pour l’analyse des passages où elle est utilisée dans l’œuvre de Pierre de Barcelos, cette étude examine les traits les

  6. 近代苏南族谱的改良%Modern Improvements of Genealogy in South Jiangsu

    Institute of Scientific and Technical Information of China (English)

    叶舟

    2015-01-01

    Since modern times ,Chinese traditional patriarchal system has been greatly shocked by foreign new thoughts ,but some see positive role of clan and put forward to reform clan so as to facilitate social development .Compiling genealogy also faces a question of whether it be innovative or be original .Modern regions in south Jiangsu get the trend earlier than any other areas in China , and their codification of genealogy changes in many aspects ranging from the concept to system and methods .But on the other hand ,genealogy and clan show their similarity since evolution from tradition to modern times is a painful and lengthy process .In fact ,the contradiction between the old and new is the characteristics of this era as well as a true portrayal of the clan change .%近代以来,中国传统的宗法制度受到了外来新思想的冲击,但也有人看到宗族的正面作用,提出了改造宗族,促进社会发展的观点。而族谱的纂修同样面临了革新还是从旧的问题。近代苏南地区为中国得风气之先的地区,其族谱编纂便从修谱观念到修谱制度、修谱方法等各方面均出现了很多变化。但另一方面,族谱和宗族一样,从传统到近代的嬗变是一个痛苦而又漫长过程,新旧交织与矛盾其实便是这个时代的特点,也是宗族变迁的真实写照。

  7. Philanthropy and Human Rights - The Genealogy of the Idea from Antiquity to Global Society

    Directory of Open Access Journals (Sweden)

    Øjvind Larsen

    2013-06-01

    Full Text Available In the last couple of decades, philanthropy has become a concern which is taken seriously in the Western world. Normal people give donations and volunteer on a large scale within the institutions of civil society. This is the case for business corporations as well, who now have to act with a form of personal responsibility. Such a responsibility is institutionalized in the big global CSR movement, which has now been integrated in the UN Global Compact. Philanthropy has many dimensions; these include ethical, juridical, political, economic and cultural dimensions. In the last years, a lot has been written about philanthropy from a political, sociological, anthropological and managerial perspective. However, an essential question remains: what does philanthropy mean? In a Greek context, philanthropy is connected to a friendly act towards one’s owns close connections such as family or fellow citizens, and normally utilized to promote one’s own prestige in the city-state. In Roman context, universal humanism, humanitas, was invented. This universal perspective was also supported by Christianity. It is this universal concept of philanthropy which is the foundation for the different philanthropic traditions in Germany, England, France and USA. In each tradition is developed special features of the concept of philanthropy. The four traditions are summarized in the UN universal human rights, which has become the common normative reference for global philanthropy. In this way philanthropy has become, in a modern sense, a charitable act with the aim to promote human happiness independent of gender, class, race, etc. This is the genealogy of the modern understanding of philanthropy, which will be developed in this paper.

  8. Familial aggregation of childhood and adult cancer in the Utah genealogy.

    Science.gov (United States)

    Neale, Rachel E; Stiller, Charles A; Bunch, Kathryn J; Milne, Elizabeth; Mineau, Geraldine P; Murphy, Michael F G

    2013-12-15

    A small proportion of childhood cancer is attributable to known hereditary syndromes, but whether there is any familial component to the remainder remains uncertain. We explored familial aggregation of cancer in a population-based case-control study using genealogical record linkage and designed to overcome limitations of previous studies. Subjects were selected from the Utah Population Database. We compared risk of cancer in adult first-degree relatives of children who were diagnosed with cancer with the risk in relatives of children who had not had a cancer diagnosed. We identified 1,894 childhood cancer cases and 3,788 controls; 7,467 relatives of cases and 14,498 relatives of controls were included in the analysis. Relatives of children with cancer had a higher risk of cancer in adulthood than relatives of children without cancer [odds ratio (OR) 1.31, 95% confidence interval (CI) 1.11-1.56]; this was restricted to mothers and siblings and was not evident in fathers. Familial aggregation appeared stronger among relatives of cases diagnosed before 5 years of age (OR 1.48, 95% CI 1.13-1.95) than among relatives of cases who were older when diagnosed (OR 1.22, 95% CI 0.98-1.51). These findings provide evidence of a generalized excess of cancer in the mothers and siblings of children with cancer. The tendency for risk to be higher in the relatives of children who were younger at cancer diagnosis should be investigated in other large data sets. The excesses of thyroid cancer in parents of children with cancer and of any cancer in relatives of children with leukemia merit further investigation.

  9. Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits.

    Science.gov (United States)

    Zaitlen, Noah; Kraft, Peter; Patterson, Nick; Pasaniuc, Bogdan; Bhatia, Gaurav; Pollack, Samuela; Price, Alkes L

    2013-05-01

    Important knowledge about the determinants of complex human phenotypes can be obtained from the estimation of heritability, the fraction of phenotypic variation in a population that is determined by genetic factors. Here, we make use of extensive phenotype data in Iceland, long-range phased genotypes, and a population-wide genealogical database to examine the heritability of 11 quantitative and 12 dichotomous phenotypes in a sample of 38,167 individuals. Most previous estimates of heritability are derived from family-based approaches such as twin studies, which may be biased upwards by epistatic interactions or shared environment. Our estimates of heritability, based on both closely and distantly related pairs of individuals, are significantly lower than those from previous studies. We examine phenotypic correlations across a range of relationships, from siblings to first cousins, and find that the excess phenotypic correlation in these related individuals is predominantly due to shared environment as opposed to dominance or epistasis. We also develop a new method to jointly estimate narrow-sense heritability and the heritability explained by genotyped SNPs. Unlike existing methods, this approach permits the use of information from both closely and distantly related pairs of individuals, thereby reducing the variance of estimates of heritability explained by genotyped SNPs while preventing upward bias. Our results show that common SNPs explain a larger proportion of the heritability than previously thought, with SNPs present on Illumina 300K genotyping arrays explaining more than half of the heritability for the 23 phenotypes examined in this study. Much of the remaining heritability is likely to be due to rare alleles that are not captured by standard genotyping arrays.

  10. Notas para uma genealogia da Psicologia Social Notes for a genealogy of Social Psychology

    Directory of Open Access Journals (Sweden)

    Rosane Neves da Silva

    2004-08-01

    Full Text Available A partir de uma "desnaturalização" do conceito de social, pretende-se situar as condições de possibilidade para a invenção da psicologia social. Utilizando uma estratégia genealógica, nosso objetivo é mostrar que, no lugar da psicologia explicar o social, é o próprio social que deve explicar o surgimento da psicologia moderna. Para tanto, é preciso deixar de considerar o social como sinônimo da noção de sociabilidade e passar a considerá-lo como algo essencialmente construído a partir de determinadas práticas humanas. Tal problematização permite entender como se produzem, no final do século XIX, as primeiras aproximações da psicologia moderna em direção ao social a partir das questões relacionadas ao fenômeno das multidões.The "denaturalization" of the concept "social" allow us to situate the conditions to the invention of social psychology. Using the genealogy strategy, our goal is to show that it is not psychology that explains the "social" but it is the "social" itself that explains the emergence of modern psychology. In order to attain our goal it is necessary to abandon the use of social as a synonym of sociability and to consider the "social" as a product essentially constructed by determinate human practices. This strategy allows us to understand how, at the end of the XIX century, modern psychology's firsts theoretical approaches towards the "social" were produced from matters related to the phenomena of the masses.

  11. Processes of social flourishing and their liminal collapse: elements to a genealogy of globalization.

    Science.gov (United States)

    Szakolczai, Arpad

    2016-09-01

    This article aims at exploring a long-term historical perspective on which contemporary globalization can be more meaningfully situated. A central problem with established approaches to globalization is that they are even more presentist than the literature on modernization was. Presentism not only means the ignoring of history, but also the unreflective application to history of concepts taken from the study of the modern world. In contrast, it is argued that contemporary globalization is not a unique development, but rather is a concrete case of a historical type. Taking as its point of departure the spirit, rather than the word, of Max Weber, this article extends the scope of sociological investigation into archaeological evidence. Having a genealogical design and introducing the concept of 'liminality', the article approaches the modern process of globalization through reconstructing the internal dynamics of another type of historical change called 'social flourishing'. Taking up the Weberian approach continued by Eisenstadt in his writings on 'axial age', it moves away from situations of crisis as reference point, shifting attention to periods of revival by introducing the term 'epiphany'. Through the case of early Mesopotamia, it shows how social flourishing can be transmogrified into globalizing growth, gaining a new perspective concerning the kind of 'animating spirit' that might have driven the shift from Renaissance to Reformation, the rise of modern colonialism, or contemporary globalization. More generally, it will retrieve the long-term historical background of the axial age and demonstrate the usefulness and importance of archaeological evidence for sociology. © London School of Economics and Political Science 2016.

  12. Genealogical Position of Ugaritic: the Lexical Dimension. Lexical Isoglosses between Ugaritic and other Semitic Languages. Conclusions

    Directory of Open Access Journals (Sweden)

    Kogan, Leonid

    2010-12-01

    Full Text Available This article is the concluding part of a series of publications by the author dealing with the lexical factor in the genealogical subgrouping of Semitic. In the focus of the discussion are the exclusive lexical isoglosses between Ugaritic and Semitic languages other than Canaanite: Arabic, Aramaic and Akkadian. In both former cases, such isoglosses are few in number, which almost certainly excludes any particularly close association between Ugaritic and Arabic or Aramaic. Conversely, Ugaritic- Akkadian isoglosses are comparatively numerous, which can be explained in several possible ways. In the concluding section, the Canaanite affiliation of Ugaritic as reflected in the basic vocabulary is reaffirmed, with a special emphasis on the hypothetic Ugaritic-Phoenician connection.

    El presente artículo concluye una serie de publicaciones dedicadas al factor léxico en la clasificación genealógica de las lenguas semíticas. En el centro de la discusión están las isoglosas léxicas que reúnen el ugarítico con otras lenguas semíticas no cananeas: el árabe, el arameo y el acadio. En los dos primeros casos, tales isoglosas son poco numerosas, el que prácticamente excluye la posibilidad de una relación genealógica más o menos estrecha entre el ugarítico y el árabe o el arameo. En cambio, las relativamente numerosas coincidencias entre el ugarítico y el acadio parecen remarcables y necesitan una explicación diacrónica. En la sección final del artículo, se reafirma la afiliación cananea de la lengua ugarítica, enfatizando el probable nexo especial entre el ugarítico y el fenicio.

  13. Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding proteins

    Directory of Open Access Journals (Sweden)

    Bradley Michael E

    2006-02-01

    Full Text Available Abstract Background When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, analyses of the combined data often lead to new hypotheses about molecular physiology. This represents an excellent example of how bioinformatics can be used to guide experimental research. However, progress in this direction has been slowed by the lack of a publicly available resource suitable for general use. Results The precomputed Magnum database offers a solution to this problem for ca. 1,800 full-length protein families with at least one crystal structure. The Magnum deliverables include 1 multiple sequence alignments, 2 mapping of alignment sites to crystal structure sites, 3 phylogenetic trees, 4 inferred ancestral sequences at internal tree nodes, and 5 amino acid replacements along tree branches. Comprehensive evaluations revealed that the automated procedures used to construct Magnum produced accurate models of how proteins divergently evolve, or genealogies, and correctly integrated these with the structural data. To demonstrate Magnum's capabilities, we asked for amino acid replacements requiring three nucleotide substitutions, located at internal protein structure sites, and occurring on short phylogenetic tree branches. In the cellular retinoid binding protein family a site that potentially modulates ligand binding affinity was discovered. Recruitment of cellular retinol binding protein to function as a lens crystallin in the diurnal gecko afforded another opportunity to showcase the predictive value of a browsable database containing branch replacement patterns integrated with protein structures. Conclusion We integrated two areas of protein science, evolution and structure, on a large scale and created a precomputed database, known as Magnum, which is the first freely available resource of its kind. Magnum provides evolutionary and structural

  14. Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding proteins

    Science.gov (United States)

    Bradley, Michael E; Benner, Steven A

    2006-01-01

    Background When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, analyses of the combined data often lead to new hypotheses about molecular physiology. This represents an excellent example of how bioinformatics can be used to guide experimental research. However, progress in this direction has been slowed by the lack of a publicly available resource suitable for general use. Results The precomputed Magnum database offers a solution to this problem for ca. 1,800 full-length protein families with at least one crystal structure. The Magnum deliverables include 1) multiple sequence alignments, 2) mapping of alignment sites to crystal structure sites, 3) phylogenetic trees, 4) inferred ancestral sequences at internal tree nodes, and 5) amino acid replacements along tree branches. Comprehensive evaluations revealed that the automated procedures used to construct Magnum produced accurate models of how proteins divergently evolve, or genealogies, and correctly integrated these with the structural data. To demonstrate Magnum's capabilities, we asked for amino acid replacements requiring three nucleotide substitutions, located at internal protein structure sites, and occurring on short phylogenetic tree branches. In the cellular retinoid binding protein family a site that potentially modulates ligand binding affinity was discovered. Recruitment of cellular retinol binding protein to function as a lens crystallin in the diurnal gecko afforded another opportunity to showcase the predictive value of a browsable database containing branch replacement patterns integrated with protein structures. Conclusion We integrated two areas of protein science, evolution and structure, on a large scale and created a precomputed database, known as Magnum, which is the first freely available resource of its kind. Magnum provides evolutionary and structural bioinformatics resources that

  15. Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits.

    Directory of Open Access Journals (Sweden)

    Noah Zaitlen

    2013-05-01

    Full Text Available Important knowledge about the determinants of complex human phenotypes can be obtained from the estimation of heritability, the fraction of phenotypic variation in a population that is determined by genetic factors. Here, we make use of extensive phenotype data in Iceland, long-range phased genotypes, and a population-wide genealogical database to examine the heritability of 11 quantitative and 12 dichotomous phenotypes in a sample of 38,167 individuals. Most previous estimates of heritability are derived from family-based approaches such as twin studies, which may be biased upwards by epistatic interactions or shared environment. Our estimates of heritability, based on both closely and distantly related pairs of individuals, are significantly lower than those from previous studies. We examine phenotypic correlations across a range of relationships, from siblings to first cousins, and find that the excess phenotypic correlation in these related individuals is predominantly due to shared environment as opposed to dominance or epistasis. We also develop a new method to jointly estimate narrow-sense heritability and the heritability explained by genotyped SNPs. Unlike existing methods, this approach permits the use of information from both closely and distantly related pairs of individuals, thereby reducing the variance of estimates of heritability explained by genotyped SNPs while preventing upward bias. Our results show that common SNPs explain a larger proportion of the heritability than previously thought, with SNPs present on Illumina 300K genotyping arrays explaining more than half of the heritability for the 23 phenotypes examined in this study. Much of the remaining heritability is likely to be due to rare alleles that are not captured by standard genotyping arrays.

  16. Moorean tree snail survival revisited: a multi-island genealogical perspective

    Directory of Open Access Journals (Sweden)

    Meyer Jean-Yves

    2009-08-01

    Full Text Available Abstract Background The mass extirpation of the island of Moorea's endemic partulid tree snail fauna, following the deliberate introduction of the alien predator Euglandina rosea, represents one of the highest profile conservation crises of the past thirty years. All of the island's partulids were thought to be extirpated by 1987, with five species persisting in zoos, but intensive field surveys have recently detected a number of surviving wild populations. We report here a mitochondrial (mt phylogenetic estimate of Moorean partulid wild and captive lineage survival calibrated with a reference museum collection that pre-dates the predator's introduction and that also includes a parallel dataset from the neighboring island of Tahiti. Results Although severe winnowing of Moorea's mt lineage diversity has occurred, seven of eight (six Partula; two Samoana partulid tip clades remain extant. The extinct mt clade occurred predominantly in the P. suturalis species complex and it represented a major component of Moorea's endemic partulid treespace. Extant Moorean mt clades exhibited a complex spectrum of persistence on Moorea, in captivity, and (in the form of five phylogenetically distinct sister lineages on Tahiti. Most notably, three Partula taxa, bearing two multi-island mt lineages, have survived decades of E. rosea predation on Moorea (P. taeniata and in the valleys of Tahiti (P. hyalina and P. clara. Their differential persistence was correlated with intrinsic attributes, such as taxonomy and mt lineages, rather than with their respective within-island distribution patterns. Conclusion Conservation efforts directed toward Moorean and Tahitian partulids have typically operated within a single island frame of reference, but our discovery of robust genealogical ties among survivors on both islands implies that a multi-island perspective is required. Understanding what genetic and/or ecological factors have enabled Partula taeniata, P. hyalina and P

  17. The Disquieting Revolution: A Genealogy of Reason and Racism in the Québec Press

    Directory of Open Access Journals (Sweden)

    Alan Wong

    2011-01-01

    Full Text Available Within the past decade, a series of contentious events concerning the accommodation of different cultural and religious traditions and practices in Quebec has incited much debate in this region. Labelled the “reasonable accommodation” issue by the local press, this controversy, which has its roots in neo-nationalist sentiments born of the Quiet Revolution, has incited responses ranging from denunciations of racist discrimination to calls for more stringent measures to ensure the assimilation of non-Westerners into Québécois culture. As Monika Kin Gagnon points out, this concept has moved beyond its legal origins to become a “social discourse” in the culture at-large, in that many in Quebec are vocally expressing their anxieties over the idea that the rights of newcomers has reached a tipping point, whereby the limits of reason are now over-stretched, weakening the dominant population’s values and identity. Much of this fear was stoked by certain stakeholders in the 2007 Quebec election, namely politicians and media outlets, when reasonable accommodation was highlighted as a major issue. This paper provides an analysis of that election and the campaigns leading into it, revealing how the press and the leaders of the three major political parties were complicit in transforming some negligible and private incidents into a greater menace endangering the very existence of Quebec society. By tracing the genealogy of “the reasonable Québécois”, I will demonstrate how reason and racism became intertwined during the course of this debate over rights, identity, and citizenship in Quebec.

  18. The non-structural (NS) gene segment of H9N2 influenza virus isolated from backyard poultry in Pakistan reveals strong genetic and functional similarities to the NS gene of highly pathogenic H5N1.

    Science.gov (United States)

    Munir, Muhammad; Zohari, Siamak; Iqbal, Munir; Abbas, Muhammad; Perez, Daniel Roberto; Berg, Mikael

    2013-10-01

    Apart from natural reassortment, co-circulation of different avian influenza virus strains in poultry populations can lead to generation of novel variants and reassortant viruses. In this report, we studied the genetics and functions of a reassorted non-structural gene (NS) of H9N2 influenza virus collected from back yard poultry (BYP) flock. Phylogenetic reconstruction based on hemagglutinin and neuraminidase genes indicates that an isolate from BYP belongs to H9N2. However, the NS gene-segment of this isolate cluster into genotype Z, clade 2.2 of the highly pathogenic H5N1. The NS gene plays essential roles in the host-adaptation, cell-tropism, and virulence of influenza viruses. However, such interpretations have not been investigated in naturally recombinant H9N2 viruses. Therefore, we compared the NS1 protein of H9N2 (H9N2/NS1) and highly pathogenic H5N1 (H5N1/NS1) in parallel for their abilities to regulate different signaling pathways, and investigated the molecular mechanisms of IFN-β production in human, avian, and mink lung cells. We found that H9N2/NS1 and H5N1/NS1 are comparably similar in inhibiting TNF-α induced nuclear factor κB and double stranded RNA induced activator protein 1 and interferon regulatory factor 3 transcription factors. Thus, the production of IFN-β was inhibited equally by both NS1s as demonstrated by IFN stimulatory response element and IFN-β promoter activation. Moreover, both NS1s predominantly localized in the nucleus when transfected to human A549 cells. This study therefore suggests the possible increased virulence of natural reassortant viruses for their efficient invasion of host immune responses, and proposes that these should not be overlooked for their epizootic and zoonotic potential.

  19. Genealogy of flows of continuous-state branching processes via flows of partitions and the Eve property

    CERN Document Server

    Labbé, Cyril

    2012-01-01

    We encode the genealogy of a continuous-state branching process associated with a branching mechanism $\\Psi$ - or $\\Psi$-CSBP in short - using a stochastic flow of partitions. This encoding holds for all branching mechanisms and appears as a very tractable object to deal with asymptotic behaviours and convergences. In particular we study the so-called Eve property - the existence of an ancestor from which the entire population descends asymptotically - and give a necessary and sufficient condition on the $\\Psi$-CSBP for this property to hold. Finally, we show that the flow of partitions unifies the lookdown representation and the flow of subordinators when the Eve property holds.

  20. ACADEMIC GENEALOGIES WITH RESPECT TO NARRATIVE IN HUMAN AND SOCIAL SCIENCES AND THEIR IMPLICATION FOR PUBLIC POLICIES

    Science.gov (United States)

    Fujii, Satoshi; Hasegawa, Taiki; Nakano, Takeshi; Hatori, Tsuyoshi

    In human and society science, narrative is regarded as an important issue to understand dynamic actions of human being and society. Therefore, narrative is also expected to be important for public policies that try to improve dynamic actions of human being and society. In th is study, we review academic genealogies with respect to narratives including western philosophy, hermeneutics, historical science, historical philosophy, literary criticism, clinical psychology and sociology, narrative psychology and folklore. Then we discuss how narrative can be pragmatically applied for public policies.

  1. Genealogia da ética: o sujeito em questão/Genealogy of ethics: the subject in question

    Directory of Open Access Journals (Sweden)

    Márcio Aparecido Mariguela

    2007-01-01

    Full Text Available Freud ocupou uma função dobradiça nas pesquisas que Michel Foucault realizou em torno da arqueologia do saber, da genealogia do poder e na genealogia da ética. As diferentes posições do filósofo francês sobre Freud e a psicanálise permitem articular o projeto de escrita de uma genealogia da ética com o movimento de retorno a Freud empreendido pelo psicanalista Jacques Lacan. Pretendo sustentar que a visada de Foucault sobre Freud é recorrente pela função autor que reconheceu atuar na tática genealógica. A obra de Freud, interpretada por Lacan, foi decisiva para Foucault investigar os modos de sujeição e assim estabelecer a distinção entre o que pertence ao campo da moral e aquilo que é próprio ao campo da ética. A problematização do sujeito do desejo permitiu um deslocamento da analítica do poder para a constituição do cuidado de si como um princípio ético para instaurar uma estética de si. Freud played a hinge-like function in the research conducted by Michel Foucault on the archaeology of knowledge, the genealogy of power and the genealogy of ethics. The different positions of the French philosopher on Freud and psychoanalysis allow one to articulate a project of writing of a genealogy of ethics with the movement of return to Freud carried out by the psychoanalyst Jacques Lacan. I intend to maintain that the view of Foucault on Freud is recurrent by the author function that acknowledged acting in a genealogical tactic. The work of Freud, interpreted by Lacan, was decisive for Foucault to investigate the ways of subjection and thus establish the distinction between what belongs to the moral domain and that which is proper for the ethics domain. The problematization of the subject of desire allowed a shift of the analytics of power for the constitution of the care of the self as an ethical principle to establish an aesthetic of the self.

  2. Strong vector valued integrals

    CERN Document Server

    Beckmann, Ralf

    2011-01-01

    Strong Bochner type integrals with values in locally convex spaces are introduced. It is shown that the strong integral exists in the same cases as the weak (Gelfand-Pettis) integral is known to exist. The strong integral has better continuity properties that the weak integral.

  3. La genealogía de los reglamentos escolares en México: análisis de la obra de Rafael Ramírez

    Directory of Open Access Journals (Sweden)

    Ana Cecilia Valencia Aguirre

    2011-01-01

    Full Text Available Este trabajo es resultado de un análisis cuya pregunta central es ¿Cuál es la genealogía de los reglamentos en las escuelas de educación primaria en México? el objetivo es analizar la obra de Rafael Ramírez, a través de la literatura formativa de los profesores, considerada un elemento fundacional de los mandatos institucionales de la escuela primaria, ya que genera un discurso que instituye la normatividad en la escuela básica mexicana. El método utilizado es el análisis crítico del discurso de Van Dijk, los actos de habla de Searle y la perspectiva de las metáforas de la vida cotidiana de Lakoff. La hipótesis que orienta la indagación plantea que los primeros pasos de la institucionalización del control escolar estuvieron atravesados por el discurso cristiano-católico expresado en diversos interdiscursos de la época y fundamentalmente en los reglamentos escolares que comenzaron a aparecer como parte de la literatura formativa de los profesores de escuelas primarias. Dicho análisis permite concluir que esta literatura refleja gran parte del imaginario de los profesores de escuelas públicas, ya que expresa un nacionalismobasado en el imaginario de la familia nuclear cristiana, elemento clave que configuró una de las imágenes más vivas en la conformación del estado mexicano posrevolucionario.

  4. A complex selection signature at the human AVPR1B gene

    Directory of Open Access Journals (Sweden)

    Cagliani Rachele

    2009-06-01

    Full Text Available Abstract Background The vasopressin receptor type 1b (AVPR1B is mainly expressed by pituitary corticotropes and it mediates the stimulatory effects of AVP on ACTH release; common AVPR1B haplotypes have been involved in mood and anxiety disorders in humans, while rodents lacking a functional receptor gene display behavioral defects and altered stress responses. Results Here we have analyzed the two exons of the gene and the data we present suggest that AVPR1B has been subjected to natural selection in humans. In particular, analysis of exon 2 strongly suggests the action of balancing selection in African populations and Europeans: the region displays high nucleotide diversity, an excess of intermediate-frequency alleles, a higher level of within-species diversity compared to interspecific divergence and a genealogy with common haplotypes separated by deep branches. This relatively unambiguous situation coexists with unusual features across exon 1, raising the possibility that a nonsynonymous variant (Gly191Arg in this region has been subjected to directional selection. Conclusion Although the underlying selective pressure(s remains to be identified, we consider this to be among the first documented examples of a gene involved in mood disorders and subjected to natural selection in humans; this observation might add support to the long-debated idea that depression/low mood might have played an adaptive role during human evolution.

  5. Berber genealogy and the politics of prehistoric archaeology and craniology in French Algeria (1860s-1880s).

    Science.gov (United States)

    Effros, Bonnie

    2017-03-01

    Following the conquest of Algiers and its surrounding territory by the French army in 1830, officers noted an abundance of standing stones in this region of North Africa. Although they attracted considerably less attention among their cohort than more familiar Roman monuments such as triumphal arches and bridges, these prehistoric remains were similar to formations found in Brittany and other parts of France. The first effort to document these remains occurred in 1863, when Laurent-Charles Féraud, a French army interpreter, recorded thousands of dolmens and stone formations south-west of Constantine. Alleging that these constructions were Gallic, Féraud hypothesized the close affinity of the French, who claimed descent from the ancient Gauls, with the early inhabitants of North Africa. After Féraud's claims met with scepticism among many prehistorians, French scholars argued that these remains were constructed by the ancestors of the Berbers (Kabyles in contemporary parlance), whom they hypothesized had been dominated by a blond race of European origin. Using craniometric statistics of human remains found in the vicinity of the standing stones to propose a genealogy of the Kabyles, French administrators in Algeria thereafter suggested that their mixed origins allowed them to adapt more easily than the Arab population to French colonial governance. This case study at the intersection of prehistoric archaeology, ancient history and craniology exposes how genealogical (and racial) classification made signal contributions to French colonial ideology and policy between the 1860s and 1880s.

  6. Flowering time diversification and dispersal in central Eurasian wild wheat Aegilops tauschii Coss.: genealogical and ecological framework.

    Directory of Open Access Journals (Sweden)

    Yoshihiro Matsuoka

    Full Text Available Timing of flowering is a reproductive trait that has significant impact on fitness in plants. In contrast to recent advances in understanding the molecular basis of floral transition, few empirical studies have addressed questions concerning population processes of flowering time diversification within species. We analyzed chloroplast DNA genealogical structure of flowering time variation in central Eurasian wild wheat Aegilops tauschii Coss. using 200 accessions that represent the entire species range. Flowering time measured as days from germination to flowering varied from 144.0 to 190.0 days (average 161.3 days among accessions in a common garden/greenhouse experiment. Subsequent genealogical and statistical analyses showed that (1 there exist significant longitudinal and latitudinal clines in flowering time at the species level, (2 the early-flowering phenotype evolved in two intraspecific lineages, (3 in Asia, winter temperature was an environmental factor that affected the longitudinal clinal pattern of flowering time variation, and (4 in Transcaucasus-Middle East, some latitudinal factors affected the geographic pattern of flowering time variation. On the basis of palaeoclimatic, biogeographic, and genetic evidence, the northern part of current species' range [which was within the temperate desert vegetation (TDV zone at the Last Glacial Maximum] is hypothesized to have harbored species refugia. Postglacial southward dispersal from the TDV zone seems to have been driven by lineages that evolved short-flowering-time phenotypes through different genetic mechanisms in Transcaucasus-Middle East and Asia.

  7. American Uncles and Aunts: Generations, Genealogies, Bildungs in 1930s Novels

    Directory of Open Access Journals (Sweden)

    Cinzia Scarpino

    2013-05-01

    Full Text Available The essay focuses on the characters of uncles and aunts as they emerge in four novels written in the 1930s by two second-generation immigrant novelists and two American women writers: Henry Roth’s Call It Sleep (1934, Pietro di Donato’s Christ in Concrete (1939, Josephine Herbst’s Pity Is Not Enough (1933, and Catherine Anne Porter’s Old Mortality (1937. In their portrayal of a growing-up young male and female protagonist sharing many autobiographical traits with the authors, these works can be considered late versions of American Bildungsromans in which the presence of uncles and aunts seem to function as an alternative – or complementary – model to the parental one and to play a pivotal role in the (possible or impossible Bildungs of nephews and nieces.    Starting with a brief survey on the rediscovery and mapping of anthropological, ethnological and folkloric genealogies (including recent immigrants’ stories and their unprecedented entrance into  official national narratives during the Great Depression, the essay attempts to show how the figures of uncles and aunts play strategic roles in both the working-class and immigrant Bildungs (or “anti-Bildungs represented in Call It Sleep and Christ in Concrete, and the female middle-class Bildungs (or “awakenings” evoked in Pity Is Not Enough and Old Mortality. Whereas Roth and di Donato simultaneously mark the coming of age and the modern watershed of the hyphenated literary tradition of Jewish-American and Italian-American novels by creating impossible narratives of “development” built around ghetto children, Herbst and Porters’ works seem to stem from the genre of the sentimental novel and the novel of “awakening” and to twist them into a modernist version of possible female Bildungs.

  8. Biological chemistry as a foundation of DNA genealogy: the emergence of "molecular history".

    Science.gov (United States)

    Klyosov, A A

    2011-05-01

    This paper presents the basis of DNA genealogy, a new field of science, which is currently emerging as an unusual blend of biochemistry, history, linguistics, and chemical kinetics. The methodology of the new approach is comprised of chemical (biological) kinetics applied to a pattern of mutations in non-recombinant fragments of DNA (Y chromosome and mtDNA, the latter not being considered in this overview). The goal of the analysis is to translate DNA mutation patterns into time spans to the most recent common ancestors of a given population or tribe and to the dating of ancient migration routes. To illustrate this approach, time spans to the common ancestors are calculated for ethnic Russians, that is Eastern Slavs (R1a1 tribe), Western Slavs (I1 and I2 tribes), and Northern (or Uralic) Slavs (N1c tribe), which were found to live around 4600 years before present (R1a1), 3650 ybp (I1), 3000 and 10,500 ybp (I2, two principal DNA lineages), and 3525 ybp (N1c) (confidence intervals are given in the main text). The data were compared with the respective dates for the nearest common ancestor of the R1a1 "Indo-European" population in India, who lived 4050 years before present, whose descendants represent the majority of the upper castes in India today (up to 72%). Furthermore, it was found that the haplotypes of ethnic Russians of the R1a1 haplogroup (up to 62% of the population in the Russian Federation) and those of the R1a1 Indians (more than 100 million today) are practically identical to each other, up to 67-marker haplotypes. This essentially solves a 200-year-old mystery of who were the Aryans who arrived in India around 3500 years before the present. Haplotypes and time spans to the ancient common ancestors were also compared for the ethnic Russians of haplogroups I1 and I2, on one hand, and the respective I1 and I2 populations in Eastern and Western Europe and Scandinavia, on the other. It is suggested that the approach described in this overview lays the

  9. What's in a Name: Elective Genealogy in Schwarz-Bart's Early Novels

    Directory of Open Access Journals (Sweden)

    Clarisse Zimra

    1993-01-01

    Full Text Available This essay considers the question of the textual inscription of history in Solitude, Plat de porc and Télumée , by focusing on a narrative feature present in all three: the naming scene, wherein characters claim elective descent from a real historical figure, the pregnant mulatto woman, Solitude, captured and executed after the battle of Matouba in 1802 on Guadeloupe. Every Schwarz-Bart novel to date contains at least one scene, often several, staging this retelling of specifically Guadeloupean origins: the resistance to the reinstatement of slavery, and the ensuing tragedy on Matouba. In Un Plat de porc aux bananes vertes (1967, the child Mariotte, refusing the white values of her household, claims Solitude as model and ancestor. Later in Plule et vent sur Télumée Miracle (1972, Télumée regains her rightful place, through the connecting links of the oral chain, within a whole genealogy that is both biological and elective. Schwarz-Bart's corpus should be read as a gradual expansion of storytelling as a naming moment that makes sense of history in the retelling of it. This dramatized primal scene serves as matrix for the fictional discourse: it is the moment of revelation that simultaneously structures the narrator's individual consciousness and the narrative unfolding of a once-repressed collective memory. In the text's matricial moment, the daughter refuses the name—and the law—of the patriarchal Father (upending Lacan's "nom/non du père," so to speak to reclaim the name, and, in Solitude's own pregnancy, the body of the Mother. It is a political act in that its coming into existence demands a radical shift in power relations as well as in consciousness. For a Schwarz-Bart heroine, this represents the first necessary step towards grounding herself in a tradition and an oral chain of her own choosing, with Negritude as its implied counter-text. What is remarkable is that Schwarz-Bart eventually rejects the binary, essentialist trap

  10. Strongly Gorenstein Flat Dimensions

    Institute of Scientific and Technical Information of China (English)

    Chun Xia ZHANG; Li Min WANG

    2011-01-01

    This article is concerned with the strongly Gorenstein flat dimensions of modules and rings.We show this dimension has nice properties when the ring is coherent,and extend the well-known Hilbert's syzygy theorem to the strongly Gorenstein flat dimensions of rings.Also,we investigate the strongly Gorenstein flat dimensions of direct products of rings and (almost)excellent extensions of rings.

  11. Genealogy Composition in Response to Trauma: Gender and Memory in 1 Chronicles 1–9 and the Documentary Film "My Life Part 2”

    NARCIS (Netherlands)

    Löwisch, I.S.

    2013-01-01

    The thesis asks which characteristics of the biblical genealogies turn them into a form of cultural memory that has the potential to make sense of traumatic and fractured pasts, and to integrate them into present conceptions of identity and agency. Specifically, it asks which role gender plays in

  12. Comparison of linear mixed model analysis and genealogy-based haplotype clustering with a Bayesian approach for association mapping in a pedigreed population

    DEFF Research Database (Denmark)

    Dashab, Golam Reza; Kadri, Naveen Kumar; Mahdi Shariati, Mohammad;

    2012-01-01

    ) Mixed model analysis (MMA), 2) Random haplotype model (RHM), 3) Genealogy-based mixed model (GENMIX), and 4) Bayesian variable selection (BVS). The data consisted of phenotypes of 2000 animals from 20 sire families and were genotyped with 9990 SNPs on five chromosomes. Results: Out of the eight...

  13. Some Reflections on the Origin of Reason Through an Outline of the Genealogy of Language in the Light of Homonymity, Analogy, and Metaphor

    DEFF Research Database (Denmark)

    Kirkeby, Ole Fogh

    2016-01-01

    The origin of reason through an outline of the genealogy of language in the light of homonymity, analogy, and metaphor. In this chapter, I try to show that reason as a cognitive capacity primarily functions through the use of homonyms. The argument is based on the fact that experience is created ...

  14. Two evolutionary histories in the genome of rice: the roles of domestication genes.

    Science.gov (United States)

    He, Ziwen; Zhai, Weiwei; Wen, Haijun; Tang, Tian; Wang, Yu; Lu, Xuemei; Greenberg, Anthony J; Hudson, Richard R; Wu, Chung-I; Shi, Suhua

    2011-06-01

    Genealogical patterns in different genomic regions may be different due to the joint influence of gene flow and selection. The existence of two subspecies of cultivated rice provides a unique opportunity for analyzing these effects during domestication. We chose 66 accessions from the three rice taxa (about 22 each from Oryza sativa indica, O. sativa japonica, and O. rufipogon) for whole-genome sequencing. In the search for the signature of selection, we focus on low diversity regions (LDRs) shared by both cultivars. We found that the genealogical histories of these overlapping LDRs are distinct from the genomic background. While indica and japonica genomes generally appear to be of independent origin, many overlapping LDRs may have originated only once, as a result of selection and subsequent introgression. Interestingly, many such LDRs contain only one candidate gene of rice domestication, and several known domestication genes have indeed been "rediscovered" by this approach. In summary, we identified 13 additional candidate genes of domestication.

  15. Preliminary Study on the Composing Contents and Stylistic Innovations of Xiuning--- Based Fan Family's Genealogy in Wanli Period%万历《休宁范氏宗谱》编纂内容与体例初探

    Institute of Scientific and Technical Information of China (English)

    吕春阳

    2016-01-01

    徽州地区宗族社会历来十分重视纂修家谱,《休宁范氏宗谱》具有重视史实考证、注重家谱的教化功能特点,同时对徽州家谱体例结构的研究使得该谱成为一部具有代表性的家谱,其创立的家谱编修体例影响了后世两百多年徽州地区的修谱体例,对梳理明代徽州家谱体例的发展脉络,全面展现明代徽州家谱体例的继承和发展状况具有十分重要的作用。%Huizhou's lineage society always pays a lot of attention to composing genealogical trees .The Xiuning - based Fan Family's Genealogical Tree was featured in composition with the emphasis on textual research about history facts and on the edification effect of the genealogical tree .Meanwhile ,studies on the stylistic structure and starting - ending time of genealogical trees in Huizhou region have made the Fan family's genealogical tree a very representative one .This genealogical tree created a composing style that influenced later styles of genealogical tree in Huizhou for two hundred years ,so it has very important significance in terms of sorting out the development process of the styles of genealogical tree in Ming Dynasty and presenting an all - round status of the inheritance and development of the styles of genealogical trees in Huizhou region .

  16. Gene

    Data.gov (United States)

    U.S. Department of Health & Human Services — Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes,...

  17. Strong evidence for a genetic contribution to late-onset Alzheimer's disease mortality: a population-based study.

    Directory of Open Access Journals (Sweden)

    John S K Kauwe

    Full Text Available BACKGROUND: Alzheimer's disease (AD is an international health concern that has a devastating effect on patients and families. While several genetic risk factors for AD have been identified much of the genetic variance in AD remains unexplained. There are limited published assessments of the familiality of Alzheimer's disease. Here we present the largest genealogy-based analysis of AD to date. METHODS: We assessed the familiality of AD in The Utah Population Database (UPDB, a population-based resource linking electronic health data repositories for the state with the computerized genealogy of the Utah settlers and their descendants. We searched UPDB for significant familial clustering of AD to evaluate the genetic contribution to disease. We compared the Genealogical Index of Familiality (GIF between AD individuals and randomly selected controls and estimated the Relative Risk (RR for a range of family relationships. Finally, we identified pedigrees with a significant excess of AD deaths. RESULTS: The GIF analysis showed that pairs of individuals dying from AD were significantly more related than expected. This excess of relatedness was observed for both close and distant relationships. RRs for death from AD among relatives of individuals dying from AD were significantly increased for both close and more distant relatives. Multiple pedigrees had a significant excess of AD deaths. CONCLUSIONS: These data strongly support a genetic contribution to the observed clustering of individuals dying from AD. This report is the first large population-based assessment of the familiality of AD mortality and provides the only reported estimates of relative risk of AD mortality in extended relatives to date. The high-risk pedigrees identified show a true excess of AD mortality (not just multiple cases and are greater in depth and width than published AD pedigrees. The presence of these high-risk pedigrees strongly supports the possibility of rare

  18. Official Genealogy in Tang Dynasty and the Shuzu Status Evolution%唐代官修谱牒与庶族地位变迁

    Institute of Scientific and Technical Information of China (English)

    姜明辉

    2013-01-01

    谱牒编修伴随着宗族的产生而出现,随着世族门阀的兴起得以迅速发展,尤其是在唐代,谱牒的发展达到了顶峰。它不仅仅是传统意义的修谱,而且是统治者用来打击士族,提高庶族地位巩固统治的政治工具。唐代经过三次大规模的官修谱谍,使士庶二族的地位逐渐趋于合流,加之科举选官制度等其它方面的原因,盛行于晋唐时期的门阀制度也渐趋衰落,官修谱牒不再盛行,谱牒编修也逐渐向私家转变。%Along with the emergency of clan appeared the genealogy. With the rise of powerful family clans, it had enjoyed a booming, esp. in Tang Dynasty, when the genealogy compilation reached its peak.Rather than the traditional significance, the genealogy functioned as political tool for the rulers to suppress the aristocracy, enhance Shuzu (the humble) and consolidate the rule. Through the three large-scale state-sponsored amendments, the status of the aristocracy and Shuzu (the humble) tended to be confluent. Additionally, due to the imperial examination system, the patriarch system prevailing in the Jin and Tang period was fading. Therefore, official genealogy compilation was no longer popular and the editing of genealogy gradually shifted to private activity.

  19. Official Genealogy in Tang Dynasty and the Shuzu Status Evolution%唐代官修谱牒与庶族地位变迁

    Institute of Scientific and Technical Information of China (English)

    姜明辉

    2014-01-01

    谱牒编修伴随着宗族的产生而出现,随着世族门阀的兴起得以迅速发展,尤其是在唐代,谱牒的发展达到了顶峰。它不仅仅是传统意义的修谱,而且是统治者用来打击士族,提高庶族地位巩固统治的政治工具。唐代经过三次大规模的官修谱谍,使士庶二族的地位逐渐趋于合流,加之科举选官制度等其它方面的原因,盛行于晋唐时期的门阀制度也渐趋衰落,官修谱牒不再盛行,谱牒编修也逐渐向私家转变。%Along with the emergency of clan appeared the genealogy. With the rise of powerful family clans, it had enjoyed a booming, esp. in Tang Dynasty, when the genealogy compilation reached its peak.Rather than the traditional significance, the genealogy functioned as political tool for the rulers to suppress the aristocracy, enhance Shuzu (the humble) and consolidate the rule. Through the three large-scale state-sponsored amendments, the status of the aristocracy and Shuzu (the humble) tended to be confluent. Additionally, due to the imperial examination system, the patriarch system prevailing in the Jin and Tang period was fading. Therefore, official genealogy compilation was no longer popular and the editing of genealogy gradually shifted to private activity.

  20. Strong Field, Noncommutative QED

    Directory of Open Access Journals (Sweden)

    Anton Ilderton

    2010-05-01

    Full Text Available We review the effects of strong background fields in noncommutative QED. Beginning with the noncommutative Maxwell and Dirac equations, we describe how combined noncommutative and strong field effects modify the propagation of fermions and photons. We extend these studies beyond the case of constant backgrounds by giving a new and revealing interpretation of the photon dispersion relation. Considering scattering in background fields, we then show that the noncommutative photon is primarily responsible for generating deviations from strong field QED results. Finally, we propose a new method for constructing gauge invariant variables in noncommutative QED, and use it to analyse the physics of our null background fields.

  1. How strong is the strong interaction?

    Energy Technology Data Exchange (ETDEWEB)

    Blomgren, J.; Bergenwall, B.; Hildebrand, A.; Johansson, C.; Klug, J.; Mermod, P.; Nilsson, L.; Pomp, S.; Oesterlund, M. [Dept. of Neutron Research, Uppsala Univ., Uppsala (Sweden); Tippawan, U. [Dept. of Neutron Research, Uppsala Univ., Uppsala (Sweden)]|[Fast Neutron Research Facility, Dept. of Physics, Chiang Mai Univ. (Thailand); Jonsson, O.; Prokofiev, A.V. [The Svedberg Lab., Uppsala Univ., Uppsala (Sweden); Nadel-Turonski, P. [Dept. of Radiation Sciences, Uppsala Univ., Uppsala (Sweden); Olsson, N. [Dept. of Neutron Research, Uppsala Univ., Uppsala (Sweden)]|[Swedish Defence Research Agency, Stockholm (Sweden); Dangtip, S. [Fast Neutron Research Facility, Dept. of Physics, Chiang Mai Univ. (Thailand)

    2003-07-01

    Elastic neutron scattering plays a key role in establishing the neutron-nucleus potential, i.e., the interaction strength between a neutron and a nucleus. In ADS applications, this information is useful in many different ways. Elastic scattering data are needed when determining the neutron intensity profile in and ADS system. In addition, the optical potentials derived from elastic neutron scattering data are used as input in every model calculation with a neutron in the incident or exit channel. Recently, there has been intense international debate on the neutron-proton scattering cross section. In the global data base, the backward cross section differs by 10% or even more at energies above 100 MeV. It is difficult to overemphasize the importance of this issue. The np scattering cross section is used as cross section reference in essentially all measurements of neutron-induced cross sections. Thus, for many applied cross sections the absolute scale is uncertain by the same amount. Moreover, the np scattering cross section has been used to derive the pion-nucleon coupling constant, i.e., the absolute strength of the strong interaction. It is annoying to have such a large uncertainty for such a fundamental parameter. We are presenting new data on elastic neutron scattering at 96 MeV from {sup 12}C and {sup 208}Pb, where the latter is part of the HINDAS project. In addition, new data on np scattering at 190 MeV will be presented. The impact on ADS and fundamental physics will be discussed. (orig.)

  2. Interculturalidade: por uma genealogia da discriminação Interculturality: for a genealogy of discrimination

    Directory of Open Access Journals (Sweden)

    Maria Beatriz Rodrigues

    2007-12-01

    its toll of exclusion and discrimination to be paid by the newcomers. This article focuses on diversity and multicultural cohabitation and tries to grasp, genealogically, the meanings and effects of discrimination today. It uses Foucault's interviews and texts between 1978-79 about his direct involvement with Khomeini's Iranian Revolution. This material, together with many contemporary examples extracted from the author's subjectivity as an emigrant in Europe, serves as an inaugural vehicle to discuss ethnical, cultural and religious intolerance, in the background of the so called "clash of civilizations".

  3. Strong Cosmic Censorship

    Science.gov (United States)

    Isenberg, James

    2017-01-01

    The Hawking-Penrose theorems tell us that solutions of Einstein's equations are generally singular, in the sense of the incompleteness of causal geodesics (the paths of physical observers). These singularities might be marked by the blowup of curvature and therefore crushing tidal forces, or by the breakdown of physical determinism. Penrose has conjectured (in his `Strong Cosmic Censorship Conjecture`) that it is generically unbounded curvature that causes singularities, rather than causal breakdown. The verification that ``AVTD behavior'' (marked by the domination of time derivatives over space derivatives) is generically present in a family of solutions has proven to be a useful tool for studying model versions of Strong Cosmic Censorship in that family. I discuss some of the history of Strong Cosmic Censorship, and then discuss what is known about AVTD behavior and Strong Cosmic Censorship in families of solutions defined by varying degrees of isometry, and discuss recent results which we believe will extend this knowledge and provide new support for Strong Cosmic Censorship. I also comment on some of the recent work on ``Weak Null Singularities'', and how this relates to Strong Cosmic Censorship.

  4. [Ethics and medicine in Michel Foucault: the humanistic dimension of medicine derived from a genealogy of morality].

    Science.gov (United States)

    Gomes, Benjamim

    2005-01-01

    The article presents the results of a doctoral dissertation defended at the Universidad de Salamanca, based on Foucault's final decade of writings. If Foucault's goal in writing The History of Sexuality was to fashion a genealogy of ethics, my goal in analyzing this book, along with his other writings, is to demonstrate his last contribution to the history of medicine. He moves from a conception of power over others towards a conception of power over oneself, an exclusive terrain of ancient Greek morality. As a thinker who tries to understand today's problems by going to their roots, Foucault develops less a history than a philosophy of history. Considered an anti-humanist, he leaves us with a portrait of a wholly ethical-humanistic medicine.

  5. Madness, Monstrosity and Writing: Towards a Genealogical Analysis in 'El obsceno pájaro de la noche'

    Directory of Open Access Journals (Sweden)

    Santiago Juan-Navarro

    2016-06-01

    Full Text Available Drawing on Foucault’s concept of “genealogy,” this article explores madness, monstrosity and writing in José Donoso´s The Obscene Bird of Night(1970. Like Foucault, Donoso is interested in studying the body as “the inscribed surface of events,” the locus of a dissociated self (adopting the illusion of a substantial unity, and a mass in perpetual disintegration. Like Donoso, Foucault assaults enlightened reason and the principle of reality in order to subvert and transgress the instrumental rationality and normalcy of bourgeois culture. This essay analyzes Donoso’s novel in light of these concepts in order to open a new path for understanding one of the most obscure texts in modern Latin American fiction.

  6. Genealogical Analysis of the North-American Spring Wheat Varieties with Different Resistance to Pre-harvest Sprouting

    Directory of Open Access Journals (Sweden)

    Martynov Sergey

    2016-12-01

    Full Text Available A comparative analysis of genetic diversity of North American spring wheat varieties differing in resistance to pre-harvest sprouting was carried out. For identification of sources of resistance the genealogical profiles of 148 red-grained and 63 white-grained North-American spring wheat varieties with full pedigrees were calculated and estimates were made of pre-harvest sprouting. The cluster structure of the populations of red-grained and white-grained varieties was estimated. Analysis of variance revealed significant differences between the average contributions of landraces in the groups of resistant and susceptible varieties. Distribution of the putative sources of resistance in the clusters indicated that varieties having different genetic basis may have different sources of resistance. For red-grained varieties the genetic sources of resistance to pre-harvest sprouting are landraces Crimean, Hard Red Calcutta, and Iumillo, or Button, Kenya 9M-1A-3, and Kenya-U, or Red Egyptian and Kenya BF4-3B-10V1. Tracking of pedigrees showed these landraces contributed to the pedigrees, respectively, via Thatcher, Kenya-Farmer, and Kenya-58, which were likely donors of resistance for red-grained varieties. For white-grained varieties the sources of resistance were landraces Crimean, Hard Red Calcutta, Ostka Galicyjska, Iumillo, Akakomugi, Turco, Hybrid English, Rough Chaff White and Red King, and putative donors of resistance — Thatcher, RL2265, and Frontana. The genealogical profile of accession RL4137, the most important donor of resistance to pre-harvest sprouting in North American spring wheat breeding programmes, contains almost all identified sources of resistance.

  7. Research on Preface from Yehenala Hala Genealogy%《叶赫那拉氏宗谱序》初探

    Institute of Scientific and Technical Information of China (English)

    王敌非

    2014-01-01

    Recompiled in 1870 , the Yehenala Hala Genealogy , which contains a large quantity of histori-cal data and language&cultural information , is a kind of precious data for recording the population reproduc-tion and lineage distribution of Yehenala Hala .Yehenala Hala Genealogy recorded a brief history of Yehenala family from ancestor singken darhan to narimburu , which is of great significance not only to research on history of Yehenala family but also on Manchu society and language .Yehe, Yehlihe, Nvzhi, the ancestor and gurun in Manchu language all have different meanings in the documents and studying the connocations can better know about the historical development of Yehe .%中央民族大学藏清同治九年续修的《叶赫那拉氏宗谱》蕴含了大量的史料与语言文化信息,是记载叶赫那拉氏人口繁衍、世系分布的宝贵资料。《叶赫那拉氏宗谱序》简要记载了叶赫那拉家族自始祖星恳达尔汉至七世祖那林布禄等贝勒的承袭历史,对于叶赫那拉家族史以及满族社会、语言等方面的研究具有重要的参考价值。其叶赫、叶赫利河、女直、始祖、满文gurun,等词,在各文献中均有不同之意,究其涵义,可更好地了解叶赫氏的历史发展。

  8. Local genealogies in a linear mixed model for genome-wide association mapping in complex pedigreed populations.

    Directory of Open Access Journals (Sweden)

    Goutam Sahana

    Full Text Available INTRODUCTION: The state-of-the-art for dealing with multiple levels of relationship among the samples in genome-wide association studies (GWAS is unified mixed model analysis (MMA. This approach is very flexible, can be applied to both family-based and population-based samples, and can be extended to incorporate other effects in a straightforward and rigorous fashion. Here, we present a complementary approach, called 'GENMIX (genealogy based mixed model' which combines advantages from two powerful GWAS methods: genealogy-based haplotype grouping and MMA. SUBJECTS AND METHODS: We validated GENMIX using genotyping data of Danish Jersey cattle and simulated phenotype and compared to the MMA. We simulated scenarios for three levels of heritability (0.21, 0.34, and 0.64, seven levels of MAF (0.05, 0.10, 0.15, 0.20, 0.25, 0.35, and 0.45 and five levels of QTL effect (0.1, 0.2, 0.5, 0.7 and 1.0 in phenotypic standard deviation unit. Each of these 105 possible combinations (3 h(2 x 7 MAF x 5 effects of scenarios was replicated 25 times. RESULTS: GENMIX provides a better ranking of markers close to the causative locus' location. GENMIX outperformed MMA when the QTL effect was small and the MAF at the QTL was low. In scenarios where MAF was high or the QTL affecting the trait had a large effect both GENMIX and MMA performed similarly. CONCLUSION: In discovery studies, where high-ranking markers are identified and later examined in validation studies, we therefore expect GENMIX to enrich candidates brought to follow-up studies with true positives over false positives more than the MMA would.

  9. Assessing the Genetic Diversity and Genealogical Reconstruction of Cypress (Cupressus funebris Endl. Breeding Parents Using SSR Markers

    Directory of Open Access Journals (Sweden)

    Hanbo Yang

    2016-07-01

    Full Text Available To identify genetic diversity, genetic structure and the relationship among accessions, and further establish a core collection for the long-term breeding of cypress (Cupressus funebris Endl., the genealogy of breeding parents was reconstructed using simple sequence repeat (SSR molecular markers. Seventeen SSR markers were used to detect molecular polymorphisms among 290 cypress accessions from five provinces and 53 accessions with unknown origin in China. A total of 92 alleles (Na were detected with 5.412 alleles per locus and an average polymorphism information content (PIC of 0.593. The haplotype diversity (H ranged from 0.021 to 0.832, with an average of 0.406. The number of alleles (Na and the effective number of alleles (Ne ranged from 4.294 to 5.176 and from 2.488 to 2.817 among five populations, respectively. The pairwise population matrix of Nei’s genetic distance ranged from 0.008 to 0.023. Based on the results of unweighted pair group method average (UPGMA cluster and population structure analyses, 343 breeding parents were divided into two major groups. Lower genetic differentiation coefficients and closer genetic relationships were observed among cypress breeding parents, suggesting that the genetic basis was narrow, and the genetic relationship was confused by frequent introduction and wide cultivation. Moreover, we reconstructed the genealogy between breeding parents and 30 accessions of breeding parents from an identified core collection. According to the present study, not only geographic origin but also the relationship of the individuals should be considered in future crossbreeding work.

  10. Strongly correlated Bose gases

    Science.gov (United States)

    Chevy, F.; Salomon, C.

    2016-10-01

    The strongly interacting Bose gas is one of the most fundamental paradigms of quantum many-body physics and the subject of many experimental and theoretical investigations. We review recent progress on strongly correlated Bose gases, starting with a description of beyond mean-field corrections. We show that the Efimov effect leads to non universal phenomena and to a metastability of the low temperature Bose gas through three-body recombination to deeply bound molecular states. We outline differences and similarities with ultracold Fermi gases, discuss recent experiments on the unitary Bose gas, and finally present a few perspectives for future research.

  11. Abortion: Strong's counterexamples fail

    DEFF Research Database (Denmark)

    Di Nucci, Ezio

    2009-01-01

    This paper shows that the counterexamples proposed by Strong in 2008 in the Journal of Medical Ethics to Marquis's argument against abortion fail. Strong's basic idea is that there are cases--for example, terminally ill patients--where killing an adult human being is prima facie seriously morally......'s scenarios have some valuable future or admitted that killing them is not seriously morally wrong. Finally, if "valuable future" is interpreted as referring to objective standards, one ends up with implausible and unpalatable moral claims....

  12. Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana

    NARCIS (Netherlands)

    Arzanlou, M.; Groenewald, J.Z.; Fullerton, R.A.; Abeln, E.C.A.; Carlier, J.; Zapater, M.-F.; Buddenhagen, I.W.; Viljoen, A.; Crous, P.W.

    2008-01-01

    Three species of Mycosphaerella, namely M. eumusae, M. fijiensis, and M. musicola are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is

  13. Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana

    NARCIS (Netherlands)

    Arzanlou, M.; Groenewald, J.Z.; Fullerton, R.A.; Abeln, E.C.A.; Carlier, J.; Zapater, M.-F.; Buddenhagen, I.W.; Viljoen, A.; Crous, P.W.

    2008-01-01

    Three species of Mycosphaerella, namely M. eumusae, M. fijiensis, and M. musicola are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is kno

  14. Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon

    DEFF Research Database (Denmark)

    Mailund, T; Schauser, Leif

    2006-01-01

    GeneRecon is a software package for linkage disequilibrium mapping using coalescent theory. It is based on Bayesian Markov-chain Monte Carlo (MCMC) method for fine-scale linkage-disequilibrium gene mapping using high-density marker maps. GeneRecon explicitly models the genealogy of a sample...... of the case chromosomes in the vicinity of a disease locus. Given case and control data in the form of genotype or haplotype information, it estimates a number of parameters, most importantly, the disease position....

  15. Strongly interacting Fermi gases

    Directory of Open Access Journals (Sweden)

    Bakr W.

    2013-08-01

    Full Text Available Strongly interacting gases of ultracold fermions have become an amazingly rich test-bed for many-body theories of fermionic matter. Here we present our recent experiments on these systems. Firstly, we discuss high-precision measurements on the thermodynamics of a strongly interacting Fermi gas across the superfluid transition. The onset of superfluidity is directly observed in the compressibility, the chemical potential, the entropy, and the heat capacity. Our measurements provide benchmarks for current many-body theories on strongly interacting fermions. Secondly, we have studied the evolution of fermion pairing from three to two dimensions in these gases, relating to the physics of layered superconductors. In the presence of p-wave interactions, Fermi gases are predicted to display toplogical superfluidity carrying Majorana edge states. Two possible avenues in this direction are discussed, our creation and direct observation of spin-orbit coupling in Fermi gases and the creation of fermionic molecules of 23Na 40K that will feature strong dipolar interactions in their absolute ground state.

  16. Strong Little Magnets

    Science.gov (United States)

    Moloney, Michael J.

    2007-01-01

    Did you know that some strong little cylindrical magnets available in local hardware stores can have an effective circumferential current of 2500 A? This intriguing information can be obtained by hanging a pair of magnets at the center of a coil, as shown in Fig. 1, and measuring the oscillation frequency as a function of coil current.

  17. Police Performance Data Collection and Analysis on Progenies of Various Genealogies in Kunming Dog%昆明犬各家系繁育后代警用性能数据的采集与分析

    Institute of Scientific and Technical Information of China (English)

    李杰; 唐树生; 彭建国; 程鲁光

    2012-01-01

    为进一步掌握昆明犬各家系的警用属性,以便更好开发利用该犬种的警用价值.采集昆明犬各家系繁育后代的警用性能数据指标对昆明犬种群警用性能进行研究.结果表明:(1)昆明犬家系结构合理,母犬主要家系为16个,公犬6个;(2)公系中良好率最高为JX狼青系列(73.26%),其次是DH家系(72.65%),最低为JX草黄系列(40.00%);母系中良好率最高为LLC (80%),其次是LBS家系(79.66%);最差为CWL家系(37.5%);(3)繁育数量上,公系中以JX家系为主导(389头),其次是LGX家系(319头);母系中以LXL家系为主导(266头),其次是LLX家系(145头).本研究对进一步优化昆明犬各家系的数量结构、提高种群的警用性能及繁育性能提供了科学依据.%In order to master the police property further, and to exploit and utilize the police value better. Researcher collected and researched police performance of progenies of various genealogies in Kunming dog populations. The results showed that: Firstly, the genealogies structure was reasonable, and among, there were 16 major genealogies in female, 6 major genealogies in male. Secondly, in male, good rate of Wolf sable strain was highest (73.26%) in JX genealogy, the next was DH genealogy (72.65%), the lowest was the Straw yellow strain (40.00%) in JX genealogy. In female, good rate of LLC genealogy was the highest, at 80%, followed by the LBS genealogy, good rate was 79.66%; For CWL genealogy was the worst, good rate was 37.5%. Thirdly, according to quantity, in male, the JX genealogy was dominant at 389, followed by the LGX genealogy at 319. In female, the LXL genealogy was dominant at 266, followed by the LLX genealogy at 145. The research supplied scientific basis to further optimize genealogies quantity structure, improved Kunming dogs' police performance and breed performance.

  18. Host specificity and genealogy of the louse Polyplax serrata on field mice, Apodemus species: a case of parasite duplication or colonisation?

    Science.gov (United States)

    Stefka, Jan; Hypsa, Václav

    2008-05-01

    The genealogy, population structure and population dynamics of the sucking louse Polyplax serrata were analysed across four host species of the genus Apodemus. An analysis of 126 sequences of cytochrome c oxidase subunit I using phylogenetic approaches and haplotype networking revealed a clear structure of European samples, forming three distinct and genetically distant clades with different host specificities. Although a clear connection was detected between the host and parasite genealogies/phylogenies, a uniform pattern of co-speciation was not found. For example, a dramatic shift in the degree of host specificity was demonstrated for two related louse lineages living in sympatry and sharing one of their host species. While one of the louse lineages frequently parasitised two different host taxa (Apodemus sylvaticus and Apodemus flavicollis), the other louse lineage was strictly specific to A. flavicollis. The estimate of divergence time between the two louse lineages indicates that they may have arisen due to parasite duplication on A. flavicollis.

  19. Strong Field Spherical Dynamos

    CERN Document Server

    Dormy, Emmanuel

    2014-01-01

    Numerical models of the geodynamo are usually classified in two categories: those denominated dipolar modes, observed when the inertial term is small enough, and multipolar fluctuating dynamos, for stronger forcing. I show that a third dynamo branch corresponding to a dominant force balance between the Coriolis force and the Lorentz force can be produced numerically. This force balance is usually referred to as the strong field limit. This solution co-exists with the often described viscous branch. Direct numerical simulations exhibit a transition from a weak-field dynamo branch, in which viscous effects set the dominant length scale, and the strong field branch in which viscous and inertial effects are largely negligible. These results indicate that a distinguished limit needs to be sought to produce numerical models relevant to the geodynamo and that the usual approach of minimizing the magnetic Prandtl number (ratio of the fluid kinematic viscosity to its magnetic diffusivity) at a given Ekman number is mi...

  20. Strongly Correlated Materials

    OpenAIRE

    Morosan, Emilia; Natelson, Douglas; Nevidomskyy, Andriy H.; Si, Qimiao

    2013-01-01

    Strongly correlated materials are profoundly affected by the repulsive electron-electron interaction. This stands in contrast to many commonly used materials such as silicon and aluminum, whose properties are comparatively unaffected by the Coulomb repulsion. Correlated materials often have remarkable properties and transitions between distinct, competing phases with dramatically different electronic and magnetic orders. These rich phenomena are fascinating from the basic science perspective ...

  1. Open Flavor Strong Decays

    Science.gov (United States)

    García-Tecocoatzi, H.; Bijker, R.; Ferretti, J.; Galatà, G.; Santopinto, E.

    2016-10-01

    In this contribution, we discuss the results of a QM calculation of the open-flavor strong decays of **** light nucleon resonances. These are the results of a recent calculation, where we used a modified ^3P_0 model for the amplitudes and the U(7) algebraic model and the hypercentral quark model to predict the baryon spectrum. The decay amplitudes are compared with the existing experimental data.

  2. Strongly Correlated Topological Insulators

    Science.gov (United States)

    2016-02-03

    Research Triangle Park , NC 27709-2211 Condensed Matter, Topological Phases of Matter REPORT DOCUMENTATION PAGE 11. SPONSOR/MONITOR’S REPORT NUMBER(S...Strongly Correlated Topological Insulators In the past year, the grant was used for work in the field of topological phases, with emphasis on finding...surface of topological insulators. In the past 3 years, we have started a new direction, that of fractional topological insulators. These are materials

  3. Strong Coupling and Classicalization

    CERN Document Server

    Dvali, Gia

    2016-01-01

    Classicalization is a phenomenon in which a theory prevents itself from entering into a strong-coupling regime, by redistributing the energy among many weakly-interacting soft quanta. In this way, the scattering process of some initial hard quanta splits into a large number of soft elementary processes. In short, the theory trades the strong coupling for a high-multiplicity of quanta. At very high energies, the outcome of such a scattering experiment is a production of soft states of high occupation number that are approximately classical. It is evident that black hole creation in particle collision at super-Planckian energies is a result of classicalization, but there is no a priory reason why this phenomenon must be limited to gravity. If the hierarchy problem is solved by classicalization, the LHC has a chance of detecting a tower of new resonances. The lowest-lying resonances must appear right at the strong coupling scale in form of short-lived elementary particles. The heavier members of the tower must b...

  4. Population and Marriage of Manchu in Qing Dynasty——A case study of "Tumen Genealogy"%清代满族人口和婚姻初探——以《图们世谱》为例

    Institute of Scientific and Technical Information of China (English)

    王海洋

    2012-01-01

    以《图们世谱》为基本史料,阐述了图们家族的人口关系和婚姻状况,通过分析该家族人口和婚姻的变化,探究清代满族人口和婚姻的状况。认为图们家族的人口变化与清代的人口发展史是相吻合的,其家族所代表的满族婚姻随着民族的融合而逐渐趋于汉化,对汉族婚姻传统的模仿使满族的婚姻带有了浓厚的封建色彩。%The population relationship and marital status of Tumen family are elaborated based on the basic historical materials "Tumen Genealogy".The marriage and the population of Manchu in Qing Dynasty are studied through an analysis of the family and marriage changes.It is argued that Tumen family's demographic changes coincide with the population history of Qing Dynasty,Manchu marriage represented by the family gradually bears the Chinese characteristics with the integration of different nationalities,and a strong feudal color can be found in Manchu's marriage due to the imitation of traditional Han Chinese marriage

  5. Genetics, Gene Flow, and Glaciation: The Case of the South American Limpet Nacella mytilina

    Science.gov (United States)

    González-Wevar, Claudio A.; Rosenfeld, Sebastián; Segovia, Nicolás I.; Hüne, Mathias; Gérard, Karin; Ojeda, Jaime; Mansilla, Andrés; Brickle, Paul; Díaz, Angie; Poulin, Elie

    2016-01-01

    Glacial episodes of the Quaternary, and particularly the Last Glacial Maximum (LGM) drastically altered the distribution of the Southern-Hemisphere biota, principally at higher latitudes. The irregular coastline of Patagonia expanding for more than 84.000 km constitutes a remarkable area to evaluate the effect of Quaternary landscape and seascape shifts over the demography of near-shore marine benthic organisms. Few studies describing the biogeographic responses of marine species to the LGM have been conducted in Patagonia, but existing data from coastal marine species have demonstrated marked genetic signatures of post-LGM recolonization and expansion. The kelp-dweller limpet Nacella mytilina is broadly distributed along the southern tip of South America and at the Falkland/Malvinas Islands. Considering its distribution, abundance, and narrow bathymetry, N. mytilina represents an appropriate model to infer how historical and contemporary processes affected the distribution of intraspecific genetic diversity and structure along the southern tip of South America. At the same time, it will be possible to determine how life history traits and the ecology of the species are responsible for the current pattern of gene flow and connectivity across the study area. We conducted phylogeographic and demographic inference analyses in N. mytilina from 12 localities along Pacific Patagonia (PP) and one population from the Falkland/Malvinas Islands (FI). Analyses of the mitochondrial gene COI in 300 individuals of N. mytilina revealed low levels of genetic polymorphism and the absence of genetic differentiation along PP. In contrast, FI showed a strong and significant differentiation from Pacific Patagonian populations. Higher levels of genetic diversity were also recorded in the FI population, together with a more expanded genealogy supporting the hypothesis of glacial persistence of the species in these islands. Haplotype genealogy, and mismatch analyses in the FI population

  6. Periodificación en arqueología peruana: genealogía y aporía

    Directory of Open Access Journals (Sweden)

    2005-01-01

    Full Text Available Périodisation en archéologie péruvienne : généalogie et aporie Résumé: La périodisation est un point stratégique d’intersection entre la théorie et la recherche empirique. Son histoire au Pérou résume bien les débats expérimentés par l’archéologie péruvienne. La variété des périodisations postulées et pratiquées dans les Andes l’a transformée en un champ d’étude privilégié. Une fois assumée la réciprocit nécessaire entre le développement d’une discipline et la connaissance de son histoire, l’auteur se livre à cette enquête sur les principaux systèmes de periodisation, les affrontements entre les tendances et le panorama actuel. Ce n’est pas un travail théorique, mais plutôt historiographique sur un aspect spécifique de l’archeologie péruvienne. L’objectif est de faire une généalogie critique et fonctionnelle, c’est-à-dire présenter la genèse des schémas conceptuels utilisés aujourd’hui, leurs liens et leurs limites. La periodificación es un estratégico punto de intersección entre la propuesta teórica y la investigación empírica. Su historia resume bien los debates por los que ha atravesado la arqueología peruana. La variedad de periodificaciones postuladas y/o practicadas en el área central andina, las convierte en un privilegiado campo de estudio. Asumida la necesaria reciprocidad entre el avance de toda disciplina y el conocimiento de su historia, se plantea este recorrido por los principales sistemas de periodificación, los enfrentamientos entre tendencias y el panorama actual. No se trata de un enfoque teórico, antes bien historiográfico de un aspecto específico de la arqueología peruana. El objetivo es hacer una genealogía crítica y funcional, es decir presentar la génesis de los esquemas conceptuales actualmente utilizados, sus conexiones y límites. Periodization in Peruvian archaeology: genealogy and apory Abstract: Periodization is a strategic point of intersection

  7. A STRONG LINK

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Trade frictions should not affect the mainstream of Sino-U.S. mutually beneficial economic and trade cooperation China and the United States have a complicated relationship, one that can be called a competitive partnership. The U.S. trade deficit with China, its third largest trading partner, hit a staggering $201.6 billion last year, an imbalance that is a major bone of contention. Yet, while frictions over trade, intellectual property rights and other issues grab the headlines, there is strong-and grow...

  8. Las genealogías de cAbd al-Mu'min, primer califa almohade

    Directory of Open Access Journals (Sweden)

    Fierro, Maribel

    2003-06-01

    Full Text Available The Almohad caliphs claimed that agnatically they belonged to the Arab tribe of Quraysh. Qays cAylān does not include the tribe of Qurayš, with which the Mu'minids claimed to be linked cognatically. According to the classical doctrine of the caliphate, to be found for example in Ibn Hazm, the caliphs should belong to Quraysh through their paternal lineage. In this article, the advantages of a Qaysi genealogy (with a long tradition among the Berber populations of North Africa for the Mu'minid caliphs are analyzed. Among those advantages there are the links that such genealogy established with the Arab tribes of Sulaym and Hilāl, crucial elements in the Mu'minid army, and with the pre-Islamic Arab Prophet Khālid b. Sinīn al-cAbsī (descendants of whom appear in connection with the episode of the Berber rebellion of the Kāhina.

    Los califas almohades afirmaron pertenecer a la tribu árabe de Qays cAylān por descendencia agnática. Qays cAylān no incluye a la tribu de Qurayš, con la que los mu'miníes afirmaban estar emparentados por línea materna. Según la doctrina clásica del califato, recogida por ejemplo por Ibn Hazm, los califas deben ser qurayšíes por línea paterna. En este artículo se analizan las ventajas que ofrecía a los califas mu'miníes esa ascendencia qaysí, de larga tradición entre las poblaciones beréberes del Norte de África. Entre esas ventajas se cuentan la vinculación de parentesco con las tribus árabes de Sulaym y Hilāl, elementos fundamentales del ejército mu'miní, y con el profeta árabe pre-islámico Jālid b. Sinān al-cAbsī (descendientes de este último aparecen en estrecha relación con el episodio de la rebelión beréber de la Kāhina.

  9. Strongly correlated materials.

    Science.gov (United States)

    Morosan, Emilia; Natelson, Douglas; Nevidomskyy, Andriy H; Si, Qimiao

    2012-09-18

    Strongly correlated materials are profoundly affected by the repulsive electron-electron interaction. This stands in contrast to many commonly used materials such as silicon and aluminum, whose properties are comparatively unaffected by the Coulomb repulsion. Correlated materials often have remarkable properties and transitions between distinct, competing phases with dramatically different electronic and magnetic orders. These rich phenomena are fascinating from the basic science perspective and offer possibilities for technological applications. This article looks at these materials through the lens of research performed at Rice University. Topics examined include: Quantum phase transitions and quantum criticality in "heavy fermion" materials and the iron pnictide high temperature superconductors; computational ab initio methods to examine strongly correlated materials and their interface with analytical theory techniques; layered dichalcogenides as example correlated materials with rich phases (charge density waves, superconductivity, hard ferromagnetism) that may be tuned by composition, pressure, and magnetic field; and nanostructure methods applied to the correlated oxides VO₂ and Fe₃O₄, where metal-insulator transitions can be manipulated by doping at the nanoscale or driving the system out of equilibrium. We conclude with a discussion of the exciting prospects for this class of materials.

  10. Strong Coupling Holography

    CERN Document Server

    Dvali, Gia

    2009-01-01

    We show that whenever a 4-dimensional theory with N particle species emerges as a consistent low energy description of a 3-brane embedded in an asymptotically-flat (4+d)-dimensional space, the holographic scale of high-dimensional gravity sets the strong coupling scale of the 4D theory. This connection persists in the limit in which gravity can be consistently decoupled. We demonstrate this effect for orbifold planes, as well as for the solitonic branes and string theoretic D-branes. In all cases the emergence of a 4D strong coupling scale from bulk holography is a persistent phenomenon. The effect turns out to be insensitive even to such extreme deformations of the brane action that seemingly shield 4D theory from the bulk gravity effects. A well understood example of such deformation is given by large 4D Einstein term in the 3-brane action, which is known to suppress the strength of 5D gravity at short distances and change the 5D Newton's law into the four-dimensional one. Nevertheless, we observe that the ...

  11. Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes

    OpenAIRE

    Ziwen He; Weiwei Zhai; Haijun Wen; Tian Tang; Yu Wang; Xuemei Lu; Greenberg, Anthony J.; Hudson, Richard R; Chung-I Wu; Suhua Shi

    2011-01-01

    Genealogical patterns in different genomic regions may be different due to the joint influence of gene flow and selection. The existence of two subspecies of cultivated rice provides a unique opportunity for analyzing these effects during domestication. We chose 66 accessions from the three rice taxa (about 22 each from Oryza sativa indica, O. sativa japonica, and O. rufipogon) for whole-genome sequencing. In the search for the signature of selection, we focus on low diversity regions (LDRs) ...

  12. Strongly Coupled Cosmologies

    CERN Document Server

    Bonometto, S A; Musco, I; Mainini, R; Maccio', A V

    2014-01-01

    Models including an energy transfer from CDM to DE are widely considered in the literature, namely to allow DE a significant high-z density. Strongly Coupled cosmologies assume a much larger coupling between DE and CDM, together with the presence of an uncoupled warm DM component, as the role of CDM is mostly restricted to radiative eras. This allows us to preserve small scale fluctuations even if the warm particle, possibly a sterile neutrino, is quite light, O(100 eV). Linear theory and numerical simulations show that these cosmologies agree with LCDM on supergalactic scales; e.g., CMB spectra are substantially identical. Simultaneously, simulations show that they significantly ease problems related to the properties of MW satellites and cores in dwarfs. SC cosmologies also open new perspectives on early black hole formation, and possibly lead towards unificating DE and inflationary scalar fields.

  13. On Strong Cosmic Censorship

    CERN Document Server

    Isenberg, James

    2015-01-01

    For almost half of the one hundred year history of Einstein's theory of general relativity, Strong Cosmic Censorship has been one of its most intriguing conjectures. The SCC conjecture addresses the issue of the nature of the singularities found in most solutions of Einstein's gravitational field equations: Are such singularities generically characterized by unbounded curvature? Is the existence of a Cauchy horizon (and the accompanying extensions into spacetime regions in which determinism fails) an unstable feature of solutions of Einstein's equations? In this short review article, after briefly commenting on the history of the SCC conjecture, we survey some of the progress made in research directed either toward supporting SCC or toward uncovering some of its weaknesses. We focus in particular on model versions of SCC which have been proven for restricted families of spacetimes (e.g., the Gowdy spacetimes), and the role played by the generic presence of Asymptotically Velocity Term Dominated behavior in th...

  14. LIGO: The strong belief

    CERN Multimedia

    Antonella Del Rosso

    2016-01-01

    Twenty years of designing, building and testing a number of innovative technologies, with the strong belief that the endeavour would lead to a historic breakthrough. The Bulletin publishes an abstract of the Courier’s interview with Barry Barish, one of the founding fathers of LIGO.   The plots show the signals of gravitational waves detected by the twin LIGO observatories at Livingston, Louisiana, and Hanford, Washington. (Image: Caltech/MIT/LIGO Lab) On 11 February, the Laser Interferometer Gravitational-Wave Observatory (LIGO) and Virgo collaborations published a historic paper in which they showed a gravitational signal emitted by the merger of two black holes. These results come after 20 years of hard work by a large collaboration of scientists operating the two LIGO observatories in the US. Barry Barish, Linde Professor of Physics, Emeritus at the California Institute of Technology and former Director of the Global Design Effort for the Internat...

  15. Governing drug use through partnerships: Towards a genealogy of government/non-government relations in drug policy.

    Science.gov (United States)

    Thomas, Natalie; Bull, Melissa; Dioso-Villa, Rachel; Smith, Catrin

    2016-02-01

    Drug policy in Australia is underpinned by the idea of partnerships wherein the non-government sector is one important partner in both delivering services and contributing to policy and decision-making processes. This article presents a genealogy of the concept of government/non-government 'partnerships', tracing its emergence and development within drug policy discourse in Australia. We find that the rise of neo-liberal policies since the 1980s has been a key factor facilitating the emergence of government/non-government 'partnerships' rhetoric in drug policy. Since the 1980s, the role of non-government organisations (NGOs) in drug policy has been articulated in relation to 'community' responsibilisation in contrast to the welfarist reliance on expert intervention. We link the rise of this rhetoric with the neo-liberal turn to governing through community and the individualisation of social problems. Furthermore, although we find that governments on the whole have encouraged the service delivery and policy work of NGOs at least in policy rhetoric, the actions of the state have at times limited the ability of NGOs to perform advocacy work and contribute to policy. Constraints on NGO drug policy work could potentially compromise the responsiveness of drug policy systems by limiting opportunities for innovative policy-making and service delivery.

  16. Reconstructing Harry: a genealogical study of a colonial family 'inside' and 'outside' the Grahamstown Asylum, 1888-1918.

    Science.gov (United States)

    Wilbraham, Lindy

    2014-04-01

    Recent scholarship has explored the dynamics between families and colonial lunatic asylums in the late nineteenth century, where families actively participated in the processes of custodial care, committal, treatment and release of their relatives. This paper works in this historical field, but with some methodological and theoretical differences. The Foucauldian study is anchored to a single case and family as an illness narrative that moves cross-referentially between bureaucratic state archival material, psychiatric case records, and intergenerational family-storytelling and family photographs. Following headaches and seizures, Harry Walter Wilbraham was medically boarded from his position as Postmaster in the Cape of Good Hope Colony of South Africa with a 'permanent disease of the brain', and was committed to the Grahamstown Asylum in 1910, where he died the following year, aged 40 years. In contrast to writings about colonial asylums that usually describe several patient cases and thematic patterns in archival material over time and place, this study's genealogical lens examines one white settler male patient's experiences within mental health care in South Africa between 1908 and 1911. The construction of Harry's 'case' interweaves archival sources and reminiscences inside and outside the asylum, and places it within psychiatric discourse of the time, and family dynamics in the years that followed. Thus, this case study maps the constitution of 'patient' and 'family' in colonial life, c.1888-1918, and considers the calamity, uncertainty, stigma and silences of mental illness.

  17. Phylogenetic analysis shows that Neolithic slate plaques from the southwestern Iberian Peninsula are not genealogical recording systems.

    Directory of Open Access Journals (Sweden)

    Daniel García Rivero

    Full Text Available Prehistoric material culture proposed to be symbolic in nature has been the object of considerable archaeological work from diverse theoretical perspectives, yet rarely are methodological tools used to test the interpretations. The lack of testing is often justified by invoking the opinion that the slippery nature of past human symbolism cannot easily be tackled by the scientific method. One such case, from the southwestern Iberian Peninsula, involves engraved stone plaques from megalithic funerary monuments dating ca. 3,500-2,750 B.C. (calibrated age. One widely accepted proposal is that the plaques are ancient mnemonic devices that record genealogies. The analysis reported here demonstrates that this is not the case, even when the most supportive data and techniques are used. Rather, we suspect there was a common ideological background to the use of plaques that overlay the southwestern Iberian Peninsula, with little or no geographic patterning. This would entail a cultural system in which plaque design was based on a fundamental core idea, with a number of mutable and variable elements surrounding it.

  18. Phylogenetic analysis shows that Neolithic slate plaques from the southwestern Iberian Peninsula are not genealogical recording systems.

    Science.gov (United States)

    García Rivero, Daniel; O'Brien, Michael J

    2014-01-01

    Prehistoric material culture proposed to be symbolic in nature has been the object of considerable archaeological work from diverse theoretical perspectives, yet rarely are methodological tools used to test the interpretations. The lack of testing is often justified by invoking the opinion that the slippery nature of past human symbolism cannot easily be tackled by the scientific method. One such case, from the southwestern Iberian Peninsula, involves engraved stone plaques from megalithic funerary monuments dating ca. 3,500-2,750 B.C. (calibrated age). One widely accepted proposal is that the plaques are ancient mnemonic devices that record genealogies. The analysis reported here demonstrates that this is not the case, even when the most supportive data and techniques are used. Rather, we suspect there was a common ideological background to the use of plaques that overlay the southwestern Iberian Peninsula, with little or no geographic patterning. This would entail a cultural system in which plaque design was based on a fundamental core idea, with a number of mutable and variable elements surrounding it.

  19. Probabilistic expert systems for forensic inference from DNA markers in horses: applications to confirm genealogies with lack of genetic data.

    Science.gov (United States)

    Dobosz, Marina; Bocci, Chiara; Bonuglia, Margherita; Grasso, Cinzia; Merigioli, Sara; Russo, Alessandra; De Iuliis, Paolo

    2010-01-01

    Microsatellites have been used for parentage testing and individual identification in forensic science because they are highly polymorphic and show abundant sequences dispersed throughout most eukaryotic nuclear genomes. At present, genetic testing based on DNA technology is used for most domesticated animals, including horses, to confirm identity, to determine parentage, and to validate registration certificates. But if genetic data of one of the putative parents are missing, verifying a genealogy could be questionable. The aim of this paper is to illustrate a new approach to analyze complex cases of disputed relationship with microsatellites markers. These cases were solved by analyzing the genotypes of the offspring and other horses' genotypes in the pedigrees of the putative dam/sire with probabilistic expert systems (PESs). PES was especially efficient in supplying reliable, error-free Bayesian probabilities in complex cases with missing pedigree data. One of these systems was developed for forensic purposes (FINEX program) and is particularly valuable in human analyses. We applied this program to parentage analysis in horses, and we will illustrate how different cases have been successfully worked out.

  20. Finding Strong Bridges and Strong Articulation Points in Linear Time

    Science.gov (United States)

    Italiano, Giuseppe F.; Laura, Luigi; Santaroni, Federico

    Given a directed graph G, an edge is a strong bridge if its removal increases the number of strongly connected components of G. Similarly, we say that a vertex is a strong articulation point if its removal increases the number of strongly connected components of G. In this paper, we present linear-time algorithms for computing all the strong bridges and all the strong articulation points of directed graphs, solving an open problem posed in [2].

  1. Influence of gene flow on divergence dating - implications for the speciation history of Takydromus grass lizards.

    Science.gov (United States)

    Tseng, Shu-Ping; Li, Shou-Hsien; Hsieh, Chia-Hung; Wang, Hurng-Yi; Lin, Si-Min

    2014-10-01

    Dating the time of divergence and understanding speciation processes are central to the study of the evolutionary history of organisms but are notoriously difficult. The difficulty is largely rooted in variations in the ancestral population size or in the genealogy variation across loci. To depict the speciation processes and divergence histories of three monophyletic Takydromus species endemic to Taiwan, we sequenced 20 nuclear loci and combined with one mitochondrial locus published in GenBank. They were analysed by a multispecies coalescent approach within a Bayesian framework. Divergence dating based on the gene tree approach showed high variation among loci, and the divergence was estimated at an earlier date than when derived by the species-tree approach. To test whether variations in the ancestral population size accounted for the majority of this variation, we conducted computer inferences using isolation-with-migration (IM) and approximate Bayesian computation (ABC) frameworks. The results revealed that gene flow during the early stage of speciation was strongly favoured over the isolation model, and the initiation of the speciation process was far earlier than the dates estimated by gene- and species-based divergence dating. Due to their limited dispersal ability, it is suggested that geographical isolation may have played a major role in the divergence of these Takydromus species. Nevertheless, this study reveals a more complex situation and demonstrates that gene flow during the speciation process cannot be overlooked and may have a great impact on divergence dating. By using multilocus data and incorporating Bayesian coalescence approaches, we provide a more biologically realistic framework for delineating the divergence history of Takydromus.

  2. Construction of Molecular Genealogy and Analysis of Family Genetic Characteristics in Laoshan Dairy Goat%崂山奶山羊分子系谱的构建及家系遗传特征分析

    Institute of Scientific and Technical Information of China (English)

    纪志宾; 王桂芝; 王金凤; 陈珊珊; 王勇; 赵金山; 程明; 王建民

    2011-01-01

    [Objective] The molecular genealogy of population known pedigree records in Laoshan Dairy Goat was constructed by using microsatellite DNA markers technology to verify the consistency with the known pedigree records, identify the factors affecting paternity testing, ascertain the genetic characteristics of family and provide a scientific basis for the conservation and genetic management of the groups. [Method] Twelve microsatellite markers with high polymorphism were selected from 25 ones for 212 Laoshan Dairy Goat with known pedigree records, parentage were analyzed with Cervus vs 2.0, molecular genealogy was built with Pedigraph vs 2.2, the genetic characteristics and phylogenesis of family were analysed with Molkin vs 3.0, MEGA4 and GeneClass2. The correlation coefficient between the exclusion probability(EP) per locus and PIC, He, Ho, K was analyzed with SPSS vs 16, and the effect of different locus and information source on the accuracy of paternity testing was analysed, also. [Result] Twelve highly polymorphic microsatellite DNA markers were selected from 25 ones in Laoshan Dairy Goat, the mean PIC value is 0.687, the mean number of allele is 5.75, the mean expected heterozygosity is 0.730. The two-parents combined exclusion probability is 0.9998 on the confidence level of 95%. The biological mother or grandmother of 115 offsprings were found from 80 candidate parents, 3 individuals were not accorded with the known pedigree records, the conincidence rate is 98.58%. The molecular genealogy was constructed on the basis of paternal strains. The correlation coefficient between the exclusion probability and the PIC is the biggest (0.99), and K with the smallest correlation coefficient (0.67). The CEP2 is more than 99.73% with 8 microsatellite loci. [Conclusion] Twelve microsatellite loci can be used for analysis of paternity or construct molecular genealogy in Laoshan Dairy Goat group. The built families have a good genetic basis, and a high genetic diversity

  3. John Strong (1941 - 2006)

    CERN Multimedia

    Wickens, F

    Our friend and colleague John Strong was cruelly taken from us by a brain tumour on Monday 31st July, a few days before his 65th birthday John started his career working with a group from Westfield College, under the leadership of Ted Bellamy. He obtained his PhD and spent the early part of his career on experiments at Rutherford Appleton Laboratory (RAL), but after the early 1970s his research was focussed on experiments in CERN. Over the years he made a number of notable contributions to experiments in CERN: The Omega spectrometer adopted a system John had originally developed for experiments at RAL using vidicon cameras to record the sparks in the spark chambers; He contributed to the success of NA1 and NA7, where he became heavily involved in the electronic trigger systems; He was responsible for the second level trigger system for the ALEPH detector and spent five years leading a team that designed and built the system, which ran for twelve years with only minor interventions. Following ALEPH he tur...

  4. Foreshocks of strong earthquakes

    Science.gov (United States)

    Guglielmi, A. V.; Sobisevich, L. E.; Sobisevich, A. L.; Lavrov, I. P.

    2014-07-01

    The specific enhancement of ultra-low-frequency (ULF) electromagnetic oscillations a few hours prior to the strong earthquakes, which was previously mentioned in the literature, motivated us to search for the distinctive features of the mechanical (foreshock) activity of the Earth's crust in the epicentral zones of the future earthquakes. Activation of the foreshocks three hours before the main shock is revealed, which is roughly similar to the enhancement of the specific electromagnetic ULF emission. It is hypothesized that the round-the-world seismic echo signals from the earthquakes, which form the peak of energy release 2 h 50 min before the main events, act as the triggers of the main shocks due to the cumulative action of the surface waves converging to the epicenter. It is established that the frequency of the fluctuations in the foreshock activity decreases at the final stages of the preparation of the main shocks, which probably testifies to the so-called mode softening at the approach of the failure point according to the catastrophe theory.

  5. Genealogical analyses of multiple loci of litostomatean ciliates (Protista, Ciliophora, Litostomatea).

    Science.gov (United States)

    Vd'ačný, Peter; Bourland, William A; Orsi, William; Epstein, Slava S; Foissner, Wilhelm

    2012-11-01

    The class Litostomatea is a highly diverse ciliate taxon comprising hundreds of free-living and endocommensal species. However, their traditional morphology-based classification conflicts with 18S rRNA gene phylogenies indicating (1) a deep bifurcation of the Litostomatea into Rhynchostomatia and Haptoria+Trichostomatia, and (2) body polarization and simplification of the oral apparatus as main evolutionary trends in the Litostomatea. To test whether 18S rRNA molecules provide a suitable proxy for litostomatean evolutionary history, we used eighteen new ITS1-5.8S rRNA-ITS2 region sequences from various free-living litostomatean orders. These single- and multiple-locus analyses are in agreement with previous 18S rRNA gene phylogenies, supporting that both 18S rRNA gene and ITS region sequences are effective tools for resolving phylogenetic relationships among the litostomateans. Despite insertions, deletions and mutational saturations in the ITS region, the present study shows that ITS1 and ITS2 molecules can be used to infer phylogenetic relationships not only at species level but also at higher taxonomic ranks when their secondary structure information is utilized to aid alignment. Copyright © 2012 Elsevier Inc. All rights reserved.

  6. On the Central Plains Immigrants and the Rise of the Codification of Genealogies in Jiangxi Province%论中原移民与江西族谱编纂的兴起

    Institute of Scientific and Technical Information of China (English)

    施由明

    2012-01-01

    The times of Song dynasty and its following dynasties were those while the common people wrote their own genealogies. From the present prefaces of the genealogies we may know that from the late period of South Song dynasty, the people of Jiangxi region wrote many genealogies Such rise of writing genealogies had great relation with the survive and breeding of the lots of immigrants from the Central Plains since the middle term of Tang dynas- ty. The descendants of the immigrants eagerly hoped to record the sources, deeds and the good morality of their an- cestors, which played important parts for the rise of writing their genealogies.%宋代及其以后的时代是中国平民化修族谱的时代。从现存的族谱序可知,南宋后期以来,江西地域的宗族撰写了大量的族谱。这种平民化族谱修篡的兴起,与唐代中期以来大量中原移民进入江西生存繁衍有着极大的关系,移民的后裔们特别渴望记述祖辈的源流、事迹与优良品德,对于平民化族谱修撰的兴起起了重要作用。

  7. The genealogy of genealogy of neurons

    OpenAIRE

    Moroz, Leonid L.

    2015-01-01

    Two scenarios of neuronal evolution (monophyly and polyphyly) are discussed in the historical timeline starting from the 19th century. The recent genomic studies on Ctenophores re-initiated a broad interest in the hypotheses of independent origins of neurons. However, even earlier work on ctenophores suggested that their nervous systems are unique in many aspects of their organization and a possibility of the independent origin of neurons and synapses was introduced well before modern advance...

  8. Genealogy of the body and genealogical body

    Directory of Open Access Journals (Sweden)

    Paola Cecchetti

    2011-06-01

    Full Text Available A partire da un quadro di Frida Kahlo intitolato I miei nonni, i miei genitori e io le due autrici indagano quel testo-immagine che sta all'origine dello stile di lettura del soggetto. Posto dinanzi alla stessa immagine, ciascuno ne fa una rappresentazione estremamente personale, un quadro delle proprie vicissitudini interne e dei legami transgenerazionali che lo hanno segnato. I momenti nei quali si articola la ricerca sono tre: la scrittura dell’occhio, il ricalco e il percorso della mano, il negativo e l’assenza.A essi segue poi lo psicodramma. Tale successione temporale abitua a vedere nell'immagine disegnata l'immagine negata, assente. L'esperienza sembra aver creato un nuovo metodo di indagine della psiche rispetto al transgenerazionale, metodo che intreccia il genogramma (di origini sistemico-relazionale e lo psicodramma analitico, e che viene chiamato “genodramma psicoanalitico”. Partendo da un dato clinico – l'esilità del legame che le nuove generazioni intrattengono con quelle che le precedono, sembra vogliano rinegoziare il contratto narcisistico che assegna al passato il posto dell'assenza. Il contributo si chiude con un interrogativo: “Alla ricerca di che cosa? Della presenza o, meglio, delle tracce lasciate nel soggetto dall'Altro che precede l'insediamento dell'Io”.

  9. Genealogías feministas: sobre mujeres, revoluciones e ilustración: una mirada desde el sur Feminist genealogies: on women, revolution & enlightment: a point of view from the south

    Directory of Open Access Journals (Sweden)

    Alejandra Ciriza Jofré

    2012-12-01

    Full Text Available Este trabajo apunta a la esbozar y reconstruir genealogías feministas desde el sur, procurando articular la reflexión filosófica sobre el pasado político de las mujeres y los fragmentos dispersos de la historia de las mujeres en Nuestra América. La lectura que me propongo realizar se halla ligada a una perspectiva sobre la relación entre pasado y presente vinculada a la inspiración benjaminiana. Desde ese punto de vista, el pasado que interesa a los y las subalternas es el tiempo ahora, esto es, un tiempo que se nutre del pasado, de la mirada hacia atrás, hacia ese momento significativo en la historia de Nuestra América - el de las guerras de independencia - y el presente. En aquel tiempo se abría un horizonte entonces anticipado como de inauguración de un nuevo tiempo y de un orden político nuevo. Esta reflexión está centrada en las relaciones entre cuerpo, política e historia desde un punto de vista que busca construir conocimiento situado, y producir una crítica a la tendencia a retornar sobre la idea del carácter a-histórico de la subordinación de las mujeres, a transformarla en lo que Geneviève Fraisse denomina una 'querella', un debate sin tiempo en el que se juega la eterna repetición de lo mismo. Una operación que, desde el punto de vista que sostengo, se duplica en el caso de las mujeres del sur.The goal of this work is to sketch and reconstruct Feminist Genealogies from a southern perspective. It aims to articulate a philosophical reflection on women's political past and the disperse fragments of the history of women (herstory in Our America. This reading will be based on the Benjaminian thought about the relationship between past and present. From this point of view, the past that concerns subalterns is the jetzt zeit, a present time that is fed from the regard to the past. Namely, in this case, the relationship between a significant time of the History of Our America - the time of the Independence Wars during

  10. 从徽州家谱看徽州家风建设--以绩溪家谱为中心%Construction of Huizhou Family Ethos from Huizhou Genealogy-An Example from Jixi Genealogy as the Core

    Institute of Scientific and Technical Information of China (English)

    姚硕

    2015-01-01

    徽州家谱辑录了大量家训家法等文献资料。家训中有关“做人、持家、志学、为官”的家风建设,体现了宗族对族人做人处世的基本要求,折射出中华民族几千年来在家庭问题上的价值观与道德观。徽州优良家风的传承不仅对基层乡土社会的宗族建设和内部结构的维系有精神支撑作用,对于当今社会主义和谐社会的构建、新时代家风的培育亦有重要意义。%Family ethos is the necessary character and style in the process of family reproduction, Huizhou genealogy compiles a large number of documents including family mottos and disciplines.The family mottos reflects the family ethos construction about how to conduct oneself in society, how to run a household, how to pursue one’s studies, and how to take up official posts, which shows the basic requirements for clansman and reflects the Chinese nation’s concept of values and morality on the family for thousands of years.Inheritance of Huizhou family ethos not only has significant spiritual supporting role in the clan construction of the grass-roots rural community and maintains the internal structure but also has important reference values for building a socialist harmonious society and forming family ethos of new era.

  11. 米歇尔·福柯的谱系学及其渊源与理路%Foucault's Genealogy and its Origins

    Institute of Scientific and Technical Information of China (English)

    石德生

    2011-01-01

    Michel Foucault's Thought is extensive profound and complex,and plays a further impact in the history of Western-society-Thought.Foucault's social research methods was rooted in Nietzsche's Genealogy and knowledge-Archaeological,And reflected the unique personal-view of methodology and characteristics.Foucault consider that Genealogy is put insight in the close things and Fact,master a variety of landscape,exhibit the difference,and put them in true environment.In his words,Genealogy is "write the history of the current".%米歇尔.福柯的思想博大精深、纷繁复杂,其研究主题、方法都对当代西方社会思想产生了深远影响。尤其是谱系学方法不但体现了福柯匠心独具的个人思想风格与研究进路,而且借此福柯将目光投向历史,通过各种历史人文景观的深层梳理、把握,展现各种知识、话语、权力等社会事物之间的联系和区别,还历史以本来面目。本文着重就谱系学方法的内蕴、逻辑、渊源,及福柯对于谱系学方法的丰富与发展做了梳理与研究。

  12. 《高林汪氏宗谱》中张英佚文述略%On Zhang Ying’s Article in Wang Family Genealogy of Gaolin

    Institute of Scientific and Technical Information of China (English)

    江小角; 朱杨

    2013-01-01

    Three missing articles of Zhang Ying of Tongcheng have been found in Wang Family Genealogy of Gaolin, that is, “The Introduction of Wang Family Genealogy of Gaolin”, “The Biography of Er Yu Gong” and “The Introduction of Wang’s Aunt Hu Tai-ruren’s Eighty Years’ Birthday”, which are of literature and certain research value. Zhang Ying has introduced the development of Wang family of Gao Lin, its compiling characteristics, his comments on compiling genealogy and his profound friendship with Wang Dewen. At the same time, appreciating Er Yu Gong and Hu Tai-ruren very much, he also writes a preface and biography to sing them.%桐城《高林汪氏宗谱》中有张英佚文三篇,即《高林汪氏宗谱序》、《尔玉公传》和《汪老伯母胡太孺人八秩荣寿序》,具有一定的文献价值和研究价值。张英介绍高林汪氏家族发展和纂修宗谱的特点,阐述自己对修谱等相关问题的认识,叙述同汪德雯的深厚情谊;同时,张英对尔玉公和胡太孺人十分景仰,撰写传记和寿序以颂之。

  13. The Historical Value of Manchu Genealogy in Qing Dynasty and Its Use%清代满族家谱的史料价值及其利用

    Institute of Scientific and Technical Information of China (English)

    杜家骥

    2016-01-01

    本文先对满族家谱作简单分类,进而从以下几方面说明其史料价值:谱单及谱书的世系;人物传记及族人事迹的其他记载;满族女性资料及婚姻内容;对满族特殊习俗的某些反映;满族祭祀;宗规家训;家族渊源及流迁、驻防调动与旗人分布;对满汉关系、满汉民族融合等方面的反映。最后,从家谱的隐恶扬善、妄攀圣贤、某些内容记述的不准确,说明在利用满族家谱时的注意事项。%By giving a simple classification of the Manchu genealogy, this article explains its historical value from the following aspects:lineage of simple genealogy and genealogy books;biographies of some famous people and other records of ordinary people;the Manchu women’s data and materials about marriage;some spe⁃cial customs of Manchu;Manchu’s sacrifice;family rules and precepts;family origin and flow;garrison’s mobi⁃lization and distribution of Banner people;the relationship between Manchu and Han, and the fusion of two na⁃tions. The article also lists the matters needing attention because of the genealogy’s inaccurate contents, such as hiding wrongdoings and praising good deeds, climbing sages, etc.

  14. The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates.

    Science.gov (United States)

    Vrancken, Bram; Rambaut, Andrew; Suchard, Marc A; Drummond, Alexei; Baele, Guy; Derdelinckx, Inge; Van Wijngaerden, Eric; Vandamme, Anne-Mieke; Van Laethem, Kristel; Lemey, Philippe

    2014-04-01

    Transmission lies at the interface of human immunodeficiency virus type 1 (HIV-1) evolution within and among hosts and separates distinct selective pressures that impose differences in both the mode of diversification and the tempo of evolution. In the absence of comprehensive direct comparative analyses of the evolutionary processes at different biological scales, our understanding of how fast within-host HIV-1 evolutionary rates translate to lower rates at the between host level remains incomplete. Here, we address this by analyzing pol and env data from a large HIV-1 subtype C transmission chain for which both the timing and the direction is known for most transmission events. To this purpose, we develop a new transmission model in a Bayesian genealogical inference framework and demonstrate how to constrain the viral evolutionary history to be compatible with the transmission history while simultaneously inferring the within-host evolutionary and population dynamics. We show that accommodating a transmission bottleneck affords the best fit our data, but the sparse within-host HIV-1 sampling prevents accurate quantification of the concomitant loss in genetic diversity. We draw inference under the transmission model to estimate HIV-1 evolutionary rates among epidemiologically-related patients and demonstrate that they lie in between fast intra-host rates and lower rates among epidemiologically unrelated individuals infected with HIV subtype C. Using a new molecular clock approach, we quantify and find support for a lower evolutionary rate along branches that accommodate a transmission event or branches that represent the entire backbone of transmitted lineages in our transmission history. Finally, we recover the rate differences at the different biological scales for both synonymous and non-synonymous substitution rates, which is only compatible with the 'store and retrieve' hypothesis positing that viruses stored early in latently infected cells preferentially

  15. The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates.

    Directory of Open Access Journals (Sweden)

    Bram Vrancken

    2014-04-01

    Full Text Available Transmission lies at the interface of human immunodeficiency virus type 1 (HIV-1 evolution within and among hosts and separates distinct selective pressures that impose differences in both the mode of diversification and the tempo of evolution. In the absence of comprehensive direct comparative analyses of the evolutionary processes at different biological scales, our understanding of how fast within-host HIV-1 evolutionary rates translate to lower rates at the between host level remains incomplete. Here, we address this by analyzing pol and env data from a large HIV-1 subtype C transmission chain for which both the timing and the direction is known for most transmission events. To this purpose, we develop a new transmission model in a Bayesian genealogical inference framework and demonstrate how to constrain the viral evolutionary history to be compatible with the transmission history while simultaneously inferring the within-host evolutionary and population dynamics. We show that accommodating a transmission bottleneck affords the best fit our data, but the sparse within-host HIV-1 sampling prevents accurate quantification of the concomitant loss in genetic diversity. We draw inference under the transmission model to estimate HIV-1 evolutionary rates among epidemiologically-related patients and demonstrate that they lie in between fast intra-host rates and lower rates among epidemiologically unrelated individuals infected with HIV subtype C. Using a new molecular clock approach, we quantify and find support for a lower evolutionary rate along branches that accommodate a transmission event or branches that represent the entire backbone of transmitted lineages in our transmission history. Finally, we recover the rate differences at the different biological scales for both synonymous and non-synonymous substitution rates, which is only compatible with the 'store and retrieve' hypothesis positing that viruses stored early in latently infected

  16. Genealogia feminina: diálogo silencioso entre gerações - Female genealogy: silent dialogue between generations

    Directory of Open Access Journals (Sweden)

    Flávia Obino Corrêa Werle, Brasil

    2014-05-01

    Full Text Available Este artigo, desenvolvido na linha da História Cultural, adota como metodologia uma abordagem biográfico-narrativa. Discute, dentre outros conceitos, os de tradição, inovação, genealogia feminina na perspectiva de novos enfoques para a História da Educação. Considera a memória, tanto como um discurso, quanto como uma presença nos objetos e cultura material. Analisa um objeto guardado e presenteado de gerações em gerações a ser usado pelas mulheres de uma mesma família na hora do parto. Problematiza o tema da formação humana em espaços de relações familiares e em modalidades não escolarizadas e questiona o que as irmãs ensinam umas às outras, que aprendizagens ocorrem nas relações entre mulheres que são vizinhas, amigas, primas, tias, sobrinhas.Palavras-chave: história da educação, tradição, memória.FEMALE GENEALOGY: SILENT DIALOGUE BETWEEN GENERATIONSAbstractThe methodology of this article, developed along the lines of Cultural History, is a biographical-narrative approach. Among other concepts, it discusses tradition, innovation, female genealogy from the perspective of new ways to focus on History of Education. It considers memory both as a discourse and as a presence in objects and material culture. An object stored and gifted from generation to generation, to be used by the women of a same family at the time of childbirth is analyzed. It problematizes tthe topic of human formation in spaces of family relations and in non-schooled modes, and asks what the sisters teach each other, what learnings occur in the relationships between women who are neighbors, friends, cousins, sisters, nieces.Key-words: history of education, tradition, memory.GENEALOGIA FEMENINA: DIALOGO SILENCIOSO ENTRE GENERACIONESResumen Este artículo, desarrollado en el contexto dela Historia Cultural, adopta como metodología una temática biográfica-narrativa. Trata los conceptos de tradición, inovación, genealogía femenina desde la

  17. Comparison of linear mixed model analysis and genealogy-based haplotype clustering with a Bayesian approach for association mapping in a pedigreed population

    DEFF Research Database (Denmark)

    Dashab, Golam Reza; Kadri, Naveen Kumar; Mahdi Shariati, Mohammad

    2012-01-01

    Background: Despite many success stories of genome wide association studies (GWAS), challenges exist in QTL detection especially in datasets with many levels of relatedness. In this study we compared four methods of GWA on a dataset simulated for the 15th QTL-MAS workshop. The four methods were 1......) Mixed model analysis (MMA), 2) Random haplotype model (RHM), 3) Genealogy-based mixed model (GENMIX), and 4) Bayesian variable selection (BVS). The data consisted of phenotypes of 2000 animals from 20 sire families and were genotyped with 9990 SNPs on five chromosomes. Results: Out of the eight...

  18. Análisis de las genealogías pictóricas como modos de afirmación del poder en Tlaxcala colonial (siglo XVI)

    OpenAIRE

    Lastiri, Ana Inés; Lanchares Vidart, Solana; Martínez Castillo, Patricia

    2016-01-01

    El siguiente trabajo de investigación se encuentra enmarcado en la propuesta de la cátedra de Historia del Arte cinco -América Colonial- (FBA). El mismo realizara el análisis de dos de los más de treinta códices encontrados en México central, realizados entre los siglos XVI y XVI. Los mismos han servido como medio y prueba para otorgar derechos y propiciar reclamos, sobre el status y las tierras, por parte de aquellos que se encontraban manifestados en las genealogías pictóricas de los ...

  19. Features of Names in Fucha hala Manchu Genealogy Tree from Acheng City%阿城富察哈拉满文谱单人名浅析

    Institute of Scientific and Technical Information of China (English)

    张杰

    2011-01-01

    阿城富察哈拉满文谱单记载的人名在用词和结构上具有明显的满族特点,如动词、名词、形容词、数词皆作人名,而人名中汉语词语则反映着满族文化变迁的一面。%The names in features in the aspect of verbal from which the Chinese reflect Fucha hala Manchu Genealogy tree in Acheng City present apparent Manchu and structure. Verbs, nouns, adjectives, and numerals are all personal names, some extent of Manchu culture' s change.

  20. A New Critical Value Concerning the Genealogy of Long Period Families at L4 in the Restricted Three-body Problem

    Institute of Scientific and Technical Information of China (English)

    Xi-Yun Hou; Lin Liu

    2008-01-01

    We found another critical mass ratio value μ between μ4 and μ5 concerning the genealogy of the long period family around the equilateral equilibrium point L4 in the re-stricted three-body problem. This value has not been pointed out before. We used numerical computations to show how the long period family evolves around this critical value. The case is similar to that of the critical values between μ2 and μ4, with slight difference in evolution details.

  1. Análisis de las genealogías pictóricas como modos de afirmación del poder en Tlaxcala colonial (siglo XVI)

    OpenAIRE

    Lastiri, Ana Inés; Lanchares Vidart, Solana; Martínez Castillo, Patricia

    2016-01-01

    El siguiente trabajo de investigación se encuentra enmarcado en la propuesta de la cátedra de Historia del Arte cinco -América Colonial- (FBA). El mismo realizara el análisis de dos de los más de treinta códices encontrados en México central, realizados entre los siglos XVI y XVI. Los mismos han servido como medio y prueba para otorgar derechos y propiciar reclamos, sobre el status y las tierras, por parte de aquellos que se encontraban manifestados en las genealogías pictóricas de los ...

  2. Serum Leukocyte Immunoglobulin-Like Receptor A3 (LILRA3) Is Increased in Patients with Multiple Sclerosis and Is a Strong Independent Indicator of Disease Severity; 6.7kbp LILRA3 Gene Deletion Is Not Associated with Diseases Susceptibility.

    Science.gov (United States)

    An, Hongyan; Lim, Chai; Guillemin, Gilles J; Vollmer-Conna, Ute; Rawlinson, William; Bryant, Katherine; Tedla, Nicodemus

    2016-01-01

    Leukocyte immunoglobulin-like receptor A3 (LILRA3) is a soluble immune regulatory molecule primarily expressed by monocytes and macrophages. A homozygous 6.7kbp LILRA3 gene deletion that removes the first seven of its eight exons is predicted to lead to lack of LILRA3 protein, although this has not been experimentally confirmed. Moreover, there are conflicting results with regards to the link between the LILRA3 homozygous genetic deletion and susceptibility to multiple sclerosis (MS) in different European populations. The aim of this study was to investigate whether LILRA3 gene deletion is associated with MS susceptibility in a North American cohort of European ancestry and assess if serum LILRA3 protein level is a marker of clinical subtype and/or disease severity in MS. A total of 456 patients with MS and 99 unrelated healthy controls were genotyped for the 6.7kbp LILRA3 gene deletion and levels of LILRA3 protein in sera determined by in-house sandwich ELISA. We showed that LILRA3 gene deletion was not associated with MS susceptibility and did not affect the age of disease onset, clinical subtype or disease severity. However, we discovered for the first time that homozygous LILRA3 gene deletion results in lack of production of LILRA3 protein. Importantly, LILRA3 protein level was significantly increased in sera of patients with MS when compared with control subjects, particularly in more severe type primary progressive MS. Multiple regression analysis showed that LILRA3 level in serum was one of the strongest independent markers of disease severity in MS, which potentially can be used as a diagnostic marker.

  3. Species-level para- and polyphyly in DNA barcode gene trees

    DEFF Research Database (Denmark)

    Mutanen, Marko; Kivelä, Sami M.; Vos, Rutger A.

    2016-01-01

    between species and gene genealogies, as indicated by situations where conspecific individuals do not form a monophyletic cluster in a gene tree. In two previous reviews, non-monophyly has been reported as being common in mitochondrial DNA gene trees. We developed a novel web service "Monophylizer...... to their nearest neighbors or exceptionally high levels of intraspecific variability. Cases of polyphyly in COI trees arising as a result of deep intraspecific divergence are negligible, as the detected cases reflected misidentifications or methodological errors. Taking into consideration variation in sampling...

  4. Identification and transcript analysis of two glutamate decarboxylase genes, CsGAD1 and CsGAD2, reveal the strong relationship between CsGAD1 and citrate utilization in citrus fruit.

    Science.gov (United States)

    Liu, Xiao; Hu, Xiao-Mei; Jin, Long-Fei; Shi, Cai-Yun; Liu, Yong-Zhong; Peng, Shu-Ang

    2014-09-01

    Glutamate decarboxylase (GAD, EC 4.1.1.15) has been suggested to be a key, regulatory point in the biosynthesis of γ-aminobutyrate (GABA) and in the utilization of citric acid through GABA shunt pathway. In this study we discovered two GAD genes, named as CsGAD1 and CsGAD2, in citrus genome database and then successfully cloned. Both CsGAD1 and CsGAD2 have a putative pyridoxal 5-phosphate binding domain in the middle region and a putative calmodulin-binding domain at the carboxyl terminus. Gene structure analysis showed that much difference exists in the size of exons and introns or in cis-regulatory elements in promoter region between the two GAD genes. Gene expression indicated that CsGAD1 transcript was predominantly expressed in flower and CsGAD2 transcript was predominantly expressed in fruit juice sacs; in the ripening fruit, CsGAD1 transcript level was at least 2-time higher than CsGAD2 transcript level. Moreover, CsGAD1 transcript level was increased significantly along with the increase of GAD activity and accompanied by a significant decrease of titratable acid (TA), suggesting that it is CsGAD1 rather than CsGAD2 plays a role in the citric acid utilization during fruit ripening. In addition, injection of abscisic acid and foliar spray of K2SO4 significantly increased the TA content of Satsuma mandarin, and significantly decreased GAD activity as well as CsGAD1 transcript, further suggesting the important role of CsGAD1 in the citrate utilization of citrus fruit.

  5. Combined Genetic and Genealogic Studies Uncover a Large BAP1 Cancer Syndrome Kindred Tracing Back Nine Generations to a Common Ancestor from the 1700s.

    Science.gov (United States)

    Carbone, Michele; Flores, Erin G; Emi, Mitsuru; Johnson, Todd A; Tsunoda, Tatsuhiko; Behner, Dusty; Hoffman, Harriet; Hesdorffer, Mary; Nasu, Masaki; Napolitano, Andrea; Powers, Amy; Minaai, Michael; Baumann, Francine; Bryant-Greenwood, Peter; Lauk, Olivia; Kirschner, Michaela B; Weder, Walter; Opitz, Isabelle; Pass, Harvey I; Gaudino, Giovanni; Pastorino, Sandra; Yang, Haining

    2015-12-01

    We recently discovered an inherited cancer syndrome caused by BRCA1-Associated Protein 1 (BAP1) germline mutations, with high incidence of mesothelioma, uveal melanoma and other cancers and very high penetrance by age 55. To identify families with the BAP1 cancer syndrome, we screened patients with family histories of multiple mesotheliomas and melanomas and/or multiple cancers. We identified four families that shared an identical BAP1 mutation: they lived across the US and did not appear to be related. By combining family histories, molecular genetics, and genealogical approaches, we uncovered a BAP1 cancer syndrome kindred of ~80,000 descendants with a core of 106 individuals, whose members descend from a couple born in Germany in the early 1700s who immigrated to North America. Their descendants spread throughout the country with mutation carriers affected by multiple malignancies. Our data show that, once a proband is identified, extended analyses of these kindreds, using genomic and genealogical studies to identify the most recent common ancestor, allow investigators to uncover additional branches of the family that may carry BAP1 mutations. Using this knowledge, we have identified new branches of this family carrying BAP1 mutations. We have also implemented early-detection strategies that help identify cancers at early-stage, when they can be cured (melanomas) or are more susceptible to therapy (MM and other malignancies).

  6. Database construction of Chinese peanut varieties and their genealogy%中国花生品种及其系谱数据库的构建

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    Based on ASP. net and VB. net technology,a network database of Chinese peanut varieties and their genealogy were constructed by Microsoft SQL Server 2008. In this database,a total of 2 498 varieties,inclu-ding the improved varieties,native varieties and introduced varieties were recorded. Among which,565 were exam-ined and approved. Among them,254 were widely used by farmers. The database can provide an excellent tool for peanut variety retrieval,genealogy tracing and key parent evaluation.%本文通过ASP. net/VB. net等技术,以SQL Server 2008为数据库架构,创建了基于网络的中国花生品种及其系谱数据库。数据库收录了育成品种(系)、农家品种和外引品种合计2498份,其中,省级以上审(鉴、认)定品种565份,大面积推广品种254份。品种检索、系谱追溯和骨干亲本评价是数据库的主要功能。

  7. Wen Tingshi’s Lost Articles Appear in Wen’s Genealogy Book%文廷式佚文近见腊市文氏谱

    Institute of Scientific and Technical Information of China (English)

    高洪年

    2013-01-01

    提文廷式谱类佚文之第八篇近见腊市庙岭村造里文氏收藏《萍西文氏族谱》,属谱序,系手书刻版(文缉熙书抄)共八页,是谱成于1890年冬,至今已123年。因谱本纸质、收藏条件等局限,序文第一页已湮缺8个字,笔者依己见补入。全序拟加标点符号以断句。%Recently, the eighth Wen Tingshi’s lost article appears in “The Genealogy Book of Wen Family in Western Pingxiang” which is collected in Miaoling Village of Lashi Town. The hand-written genealogy book with eight pages (transcribed by Wen Jixi) was finished in the winter of 1890 with a history of 123 years. Due to the paper quality and the limitations of collection conditions, 67 words are missing on the first two pages of the preface, therefore the author added 18 words to it based on personal understanding and inserted punctuations to make pauses.

  8. 身体形象的系谱学考察%Transformation and Distribution:the Genealogical Exploration of Bodily Image

    Institute of Scientific and Technical Information of China (English)

    张文圣

    2015-01-01

    The genealogical exploration provides an internal history of bodily image in different philosophic stages.In the verti-cal profile,genealogy offers a geological surface of generative process about body;correspondingly,the process of horizontal pass in this area forms a bodily topography from the surface distribution and historical continuity,which is the graphics of internal gen-eration of body.%系谱学考察建立了身体形象在不同历史性分期中流转和散布的内在历史,它作为身体形象的竖剖面提供了一个身体深度生成过程的“地质学”表层,与之相应,对这个系谱学领域的横向穿越勾画了身体通过表面分布、历史连接所形成的“地形学”,后者是关于身体内在生成的构图法。

  9. Development of Nuclear R and D Man-power Genealogy DB and preparation of Guiding Principle in Assets Application for Nuclear R and D Fund

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Dong Uk; Song, Seung Hyun; Kim, Hak Jun; Chung, Chul Eun

    2007-08-15

    Information search for nuclear professional man-power, technology genealogy search, project participation history etc. is serviced, and present limits to KAERI additionally, but constructed Site-Based DB that service is embodied as well as subject responsible person's pedigree. Information of professional man-power include origin school, last degree, distinction of sex, age etc. and technology genealogy consist of NuTRM classification, national science technology classification, and technology tree system classified in KAERI. Technology possession present condition for professional man-power of only KAERI is included within DB. Hereafter, professional manpower of the other nuclear energy company should be strengthened on the basis of DB structure that is developed. Technology tree system classified in KAERI also required to be strengthened on the man-power DB that has effectiveness for long-term as that embody by technology tree system which can represent nuclear energy through the verification of the other nuclear energy company. By applying readying guiding principle in assets application for nuclear R and D fund, secure lucency of assets application.

  10. On Years of Birth and Death of Some Literati in Qing Dynasty Recorded in Genealogies%族谱所见清代士人生卒年举隅

    Institute of Scientific and Technical Information of China (English)

    许隽超

    2016-01-01

    On the basis of sorting out and affirming the research fruits of the scholars of the time,this paper has made use of 1 1 genealogies.And it has made some corrections to the years of birth and death of 18 men of letters including Yang Ting-jin of Qing Dynasty.Compared with the officials’curriculum vitae and autographs of those who passed the imperial pro-vincial examinations and the highest examinations,their ages recorded in their genealogies are more reliable.%在梳理并肯定时贤研究成果的基础上,本文利用了十一种族谱,就杨廷锦等十八位清代士人生卒年的讹阙作了补正。较之官员履历档案及举人、进士的题名录等,族谱所记年岁的可信度应更高。

  11. Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus.

    Directory of Open Access Journals (Sweden)

    Katarina Truvé

    2016-05-01

    Full Text Available Gliomas are the most common form of malignant primary brain tumors in humans and second most common in dogs, occurring with similar frequencies in both species. Dogs are valuable spontaneous models of human complex diseases including cancers and may provide insight into disease susceptibility and oncogenesis. Several brachycephalic breeds such as Boxer, Bulldog and Boston Terrier have an elevated risk of developing glioma, but others, including Pug and Pekingese, are not at higher risk. To identify glioma-associated genetic susceptibility factors, an across-breed genome-wide association study (GWAS was performed on 39 dog glioma cases and 141 controls from 25 dog breeds, identifying a genome-wide significant locus on canine chromosome (CFA 26 (p = 2.8 x 10-8. Targeted re-sequencing of the 3.4 Mb candidate region was performed, followed by genotyping of the 56 SNVs that best fit the association pattern between the re-sequenced cases and controls. We identified three candidate genes that were highly associated with glioma susceptibility: CAMKK2, P2RX7 and DENR. CAMKK2 showed reduced expression in both canine and human brain tumors, and a non-synonymous variant in P2RX7, previously demonstrated to have a 50% decrease in receptor function, was also associated with disease. Thus, one or more of these genes appear to affect glioma susceptibility.

  12. Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development—Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus

    Science.gov (United States)

    Dickinson, Peter; Xiong, Anqi; York, Daniel; Jayashankar, Kartika; Pielberg, Gerli; Koltookian, Michele; Murén, Eva; Fuxelius, Hans-Henrik; Weishaupt, Holger; Andersson, Göran; Hedhammar, Åke; Bongcam-Rudloff, Erik; Forsberg-Nilsson, Karin

    2016-01-01

    Gliomas are the most common form of malignant primary brain tumors in humans and second most common in dogs, occurring with similar frequencies in both species. Dogs are valuable spontaneous models of human complex diseases including cancers and may provide insight into disease susceptibility and oncogenesis. Several brachycephalic breeds such as Boxer, Bulldog and Boston Terrier have an elevated risk of developing glioma, but others, including Pug and Pekingese, are not at higher risk. To identify glioma-associated genetic susceptibility factors, an across-breed genome-wide association study (GWAS) was performed on 39 dog glioma cases and 141 controls from 25 dog breeds, identifying a genome-wide significant locus on canine chromosome (CFA) 26 (p = 2.8 x 10−8). Targeted re-sequencing of the 3.4 Mb candidate region was performed, followed by genotyping of the 56 SNVs that best fit the association pattern between the re-sequenced cases and controls. We identified three candidate genes that were highly associated with glioma susceptibility: CAMKK2, P2RX7 and DENR. CAMKK2 showed reduced expression in both canine and human brain tumors, and a non-synonymous variant in P2RX7, previously demonstrated to have a 50% decrease in receptor function, was also associated with disease. Thus, one or more of these genes appear to affect glioma susceptibility. PMID:27171399

  13. THE VALUE OF THE GENEALOGICAL FACTOR FOR THE FORMATION OF THE POSITIVE BASES OF THE SOCIETY DEVELOPMENT (IN THE EXAMPLE OF RESEARCHES OF THE HISTORY OF THE SKULSKY NOBLE FAMILY

    Directory of Open Access Journals (Sweden)

    Skulskaya L. V.

    2015-01-01

    Full Text Available In the system of the sciences the genealogy is closely connected with the physical and structural anthropology, the historical psychology, demography, ethnography, genetics and other areas of knowledge. It is emphasized that today an important component of any family, except the welfare, the popularity and the existence of the significant state awards (this is a certain template which distorts an essence of the genealogical researches, because it glorifies the persons doing the actions harm to the countries of the world, is the allocation of the other essential qualities of the people. One of such intrinsic characteristics is the patriotism of service to the Fatherland to which there is attention the long-term and laborious research by the several generations of genealogy of the family of Skulsky. In the article оn the basis of the collected several generations of the researchers of unique genealogical information we have proposed an analytical approach to the study of the long history of Russia using the biographical method. In conclusion, we have disclosed the value of this method for the modern science, focused on the development of the interdisciplinary research and the increase of the reliability, objectivity, scientific findings and recommendations. Unique research data since XVI century are provided in article. The biography of two representatives of this noble family is considered in detail

  14. Strong convergence theorems for strongly relatively nonexpansive sequences and applications

    CERN Document Server

    Aoyama, Koji; Kohsaka, Fumiaki

    2012-01-01

    The aim of this paper is to establish strong convergence theorems for a strongly relatively nonexpansive sequence in a smooth and uniformly convex Banach space. Then we employ our results to approximate solutions of the zero point problem for a maximal monotone operator and the fixed point problem for a relatively nonexpansive mapping.

  15. Preliminary Study on the Composing Features and Stylistic Innovations of Linxi-based Wu Family’ s Genealogy in Chongzhen Period%崇祯《临溪吴氏宗谱》编纂特点与体例创新初探

    Institute of Scientific and Technical Information of China (English)

    吕春阳

    2016-01-01

    徽州地区宗族社会历来十分重视纂修家谱,《临溪吴氏宗谱》具有重视史实考证、注重家谱的教化功能的编纂特点,同时其对徽州家谱体例结构和断限问题的研究使得该谱成为一部具有代表性的家谱,其创立的家谱编修体例影响了后世两百多年徽州地区的修谱体例,对梳理明代徽州家谱体例的发展脉络,全面展现明代徽州家谱体例的继承和发展状况有十分重要的作用。%Huizhou ’ s lineage society always pays a lot of attention to composing genealogical trees .The Linxi-based Wu Family’ s genealogy was featured in composition with the emphasis on textual research about history facts and on the edification effect of the genealogical tree .Meanwhile , studies on the stylistic structure and starting -end-ing time of genealogical trees in Huizhou region have made the Wu family ’ s genealogical tree a very representative one.This genealogical tree created a composing style that influenced later styles of genealogical tree in Huizhou for two hundred years , so it has very important significance in terms of sorting out the development process of the styles of genealogical tree in Ming Dynasty and presenting an all -round status of the inheritance and development of the styles of genealogical trees in Huizhou region .

  16. 《鲁谼方氏族谱》的历史社会学解读%The Interpretation of Luhong Fang Family Genealogy from the Perspective of Historical Sociology

    Institute of Scientific and Technical Information of China (English)

    方金友

    2013-01-01

    近年来,随着我国经济社会的快速发展,民间续修族谱活动逐渐兴起,人们更多地给予族谱以正面的新认识。人们从族谱记载家族世系等情况中,可以了解姓氏源流、家族兴替、人口迁徙、族习门风乃至社会变故等历史,赋予族谱一定的历史价值与社会意义。《鲁谼方氏族谱》由桐城派古文家方东树撰修,具有较高的历史文献价值,折射出社会变迁与文化传承。受学术风气与交叉学科的影响,人们解读族谱的方式有所变化,族谱学研究的视野不断扩展,从历史社会学的角度解读族谱亦是一种尝试。%In recent years, with the rapid economic and social development of China, the activities of editing genealogy are gradually on the rise, which makes more and more people take new positive understanding of it. From the family lineage recorded in genealogy, people can get to know the family history, such as origin of the family name, rise and fall of the family, population migration, customs and moral standing, as well as social changes, which give genealogy certain historical value and social significance. The Luhong Fang Family Genealogy, which was written by Fang Dongshu,the Tongcheng school prose master, reflects social changes and cultural inheritance, and embodies high historical and cultural value. Under the influence of academic atmosphere and interdisciplinary, the horizon of genealogy research is expanding, which changes the way of people’s understanding of genealogy. To interpret genealogy from the perspective of historical sociology is also an attempt.

  17. Strongly Irreducible Submodules of Modules

    Institute of Scientific and Technical Information of China (English)

    A. KHAKSARI; M. ERSHAD; H. SHARIF

    2006-01-01

    Strongly irreducible submodules of modules are defined as follows: A submodule N of an R-module M is said to be strongly irreducible if for submodules L and K of M, the inclusion L ∩ K (∈) TV implies that either L (∈) N or K (∈) N. The relationship among the families of irreducible, strongly irreducible, prime and primary submodules of an .R-module M is considered, and a characterization of Noetherian modules which contain a non-prime strongly irreducible submodule is given.

  18. Phylogeny and classification of the Litostomatea (Protista, Ciliophora), with emphasis on free-living taxa and the 18S rRNA gene.

    Science.gov (United States)

    Vd'ačný, Peter; Bourland, William A; Orsi, William; Epstein, Slava S; Foissner, Wilhelm

    2011-05-01

    The class Litostomatea is a highly diverse ciliate taxon comprising hundreds of species ranging from aerobic, free-living predators to anaerobic endocommensals. This is traditionally reflected by classifying the Litostomatea into the subclasses Haptoria and Trichostomatia. The morphological classifications of the Haptoria conflict with the molecular phylogenies, which indicate polyphyly and numerous homoplasies. Thus, we analyzed the genealogy of 53 in-group species with morphological and molecular methods, including 12 new sequences from free-living taxa. The phylogenetic analyses and some strong morphological traits show: (i) body polarization and simplification of the oral apparatus as main evolutionary trends in the Litostomatea and (ii) three distinct lineages (subclasses): the Rhynchostomatia comprising Tracheliida and Dileptida; the Haptoria comprising Lacrymariida, Haptorida, Didiniida, Pleurostomatida and Spathidiida; and the Trichostomatia. The curious Homalozoon cannot be assigned to any of the haptorian orders, but is basal to a clade containing the Didiniida and Pleurostomatida. The internal relationships of the Spathidiida remain obscure because many of them and some "traditional" haptorids form separate branches within the basal polytomy of the order, indicating one or several radiations and convergent evolution. Due to the high divergence in the 18S rRNA gene, the chaeneids and cyclotrichiids are classified incertae sedis. Copyright © 2011 Elsevier Inc. All rights reserved.

  19. Short proofs of strong normalization

    OpenAIRE

    Wojdyga, Aleksander

    2008-01-01

    This paper presents simple, syntactic strong normalization proofs for the simply-typed lambda-calculus and the polymorphic lambda-calculus (system F) with the full set of logical connectives, and all the permutative reductions. The normalization proofs use translations of terms and types to systems, for which strong normalization property is known.

  20. Strongly Zero-Dimensional Locales

    Institute of Scientific and Technical Information of China (English)

    KOU Hui; LUO Mao Kang

    2002-01-01

    New kinds of strongly zero-dimensional locales are introduced and characterized, whichare different from Johnstone's, and almost all the topological properties for strongly zero-dimensionalspaces have the pointless localic forms. Particularly, the Stone-Cech compactification of a stronglyzero-dimensional locale is stongly zero-dimensional.

  1. About Strongly Universal Cellular Automata

    Directory of Open Access Journals (Sweden)

    Maurice Margenstern

    2013-09-01

    Full Text Available In this paper, we construct a strongly universal cellular automaton on the line with 11 states and the standard neighbourhood. We embed this construction into several tilings of the hyperbolic plane and of the hyperbolic 3D space giving rise to strongly universal cellular automata with 10 states.

  2. Maximum Genus of Strong Embeddings

    Institute of Scientific and Technical Information of China (English)

    Er-ling Wei; Yan-pei Liu; Han Ren

    2003-01-01

    The strong embedding conjecture states that any 2-connected graph has a strong embedding on some surface. It implies the circuit double cover conjecture: Any 2-connected graph has a circuit double cover.Conversely, it is not true. But for a 3-regular graph, the two conjectures are equivalent. In this paper, a characterization of graphs having a strong embedding with exactly 3 faces, which is the strong embedding of maximum genus, is given. In addition, some graphs with the property are provided. More generally, an upper bound of the maximum genus of strong embeddings of a graph is presented too. Lastly, it is shown that the interpolation theorem is true to planar Halin graph.

  3. Aesthetic Spirits of Sun Guo-ting's The Genealogy of Calligraphy%孙过庭《书谱》的美学思想精神

    Institute of Scientific and Technical Information of China (English)

    张健旺

    2016-01-01

    Sun Guo-ting, a calligrapher, has creative practices, and his book The Genealogy of Calligraphy is written in cursive style. His theory combines the spirits of truth, dialectics and practice. His pursuit-of-truth spirit is embodied in his non-superstition of classic works, non-opinionated behaviors or non-catering to the fashion. His dialectical spirit is shown in the dialectical position of viewing and analyzing problems. The Genealogy of Calligraphy was written through the spirit of"from practice to practice". It can be said that practice spirit is the cornerstone of The Genealogy of Calligraphy, if leaving the practical spirit, his pursuit-of-truth and dialectical spirit cannot be understood, because they are based on practice. His book can't be understood without practice spirit for the reason that he is not discussing purely theoretical problem.%孙过庭是书法家,他有创作的实践,他的《书谱》就是用草书写成的,他的理论洋溢着求真的精神、辩证的精神、实践的精神。他的求真精神体现在他不迷信经典、不固执己见和不迎合时尚的态度。他的辩证精神体现在他看问题分析问题的辩证立场。孙过庭《书谱》全文贯穿着“从实践中来到实践中去”的实践精神。可以说实践精神是他《书谱》的基石,离开实践精神,就不能很好理解他的求真精神和辩证精神,因为他的求真精神和辩证精神是以实践为基础的,离开实践精神同样也不能理解他《书谱》的艺术理论价值,因为他探讨的不是纯粹理论的问题。

  4. Effects of strong disorder in strongly correlated superconductors

    Science.gov (United States)

    Chakraborty, Debmalya; Sensarma, Rajdeep; Ghosal, Amit

    2017-01-01

    We investigate the effect of strong disorder on a system with strong electronic repulsion. In the absence of disorder, the system has a d-wave superconducting ground state with strong non-BCS features due to its proximity to a Mott insulator. We find that while strong correlations make superconductivity in this system immune to weak disorder, superconductivity is destroyed efficiently when disorder strength is comparable to the effective bandwidth. The suppression of charge motion in regions of strong potential fluctuation leads to the formation of Mott insulating patches, which anchor a larger nonsuperconducting region around them. The system thus breaks into islands of Mott insulating and superconducting regions, with Anderson insulating regions occurring along the boundary of these regions. Thus, electronic correlation and disorder, when both are strong, aid each other in destroying superconductivity, in contrast to their competition at weak disorder. Our results shed light on why zinc impurities are efficient in destroying superconductivity in cuprates, even though it is robust to weaker impurities.

  5. Whakapapa, genealogy and genetics.

    Science.gov (United States)

    Evans, Donald

    2012-05-01

    This paper provides part of an analysis of the use of the Maori term whakapapa in a study designed to test the compatibility and commensurability of views of members of the indigenous culture of New Zealand with other views of genetic technologies extant in the country. It is concerned with the narrow sense of whakapapa as denoting biological ancestry, leaving the wider sense of whakapapa as denoting cultural identity for discussion elsewhere. The phenomenon of genetic curiosity is employed to facilitate this comparison. Four levels of curiosity are identified, in the Maori data, which penetrate more or less deeply into the psyche of individuals, affecting their health and wellbeing. These phenomena are compared with non-Maori experiences and considerable commonalities are discovered together with a point of marked difference. The results raise important questions for the ethical application of genetic technologies.

  6. A giant graviton genealogy

    CERN Document Server

    Lozano, Yolanda; Prinsloo, Andrea

    2013-01-01

    In this article we extend the construction of giant gravitons from holomorphic surfaces [arXiv:hep-th/0010206] to the ABJM correspondence. We construct a new class of 1/6-BPS M5-branes wrapping 5-manifolds in S^7/Z_k and supported by a large angular momentum in the orbifold space. These orbifold giant gravitons undergo a supersymmetry enhancement to 1/3-BPS and 1/2-BPS configurations in special cases. The compactification of M-theory on AdS_4 x S^7/Z_k to type IIA superstring theory on AdS_4 x CP^3 then gives rise to another new class of 1/6-BPS D4 and NS5-branes wrapping 4 and 5-manifolds in CP^3. The D4-branes carry a combination of D0-brane charge and angular momentum in the complex projective space, while the NS5-branes are supported only by D0-brane charge. Finally, we present a detailed analysis of a one-parameter family of 1/2-BPS M5-brane orbifold giant gravitons, and their D4 and NS5-brane CP^3 descendants.

  7. Genealogía de la difícil relación entre antropología social y turismo

    Directory of Open Access Journals (Sweden)

    Antonio Miguel Nogués Pedregal

    2009-01-01

    Full Text Available En el texto se transforma el proceso de conocimiento antropológico sobre turismo en el objeto de conocimiento mismo. Para ello se aborda de manera sintética una genealogía de la aparición del turismo como objeto de estudio fenoménico, expuesta en los tres momentos epistemológicos que se han dado en la relación entre antropología y turismo. En ésta se trasluce un progresivo abandono de los sistemas discretos y dialécticos de análisis, hacia modelos más contextuales en los que predomina la metáfora del continuo y la dialógica.

  8. The middle-class nature of identity and its implications for education: a genealogical analysis and reevaluation of a culturally and historically bounded concept.

    Science.gov (United States)

    Matusov, Eugene; Smith, Mark Philip

    2012-09-01

    We consider identity as a historically emerging discourse that requires genealogical analysis - not to discover the roots of our identity but to commit [ourselves] to its dissipation (Foucault 1977, p. 162). We suggest analyzing identity through the history of socio-economic classes, their life struggles, ambitions, development, and reproduction. We see learning not as a project of transformation of identity, but rather as developing access to socially valuable practices and developing one's own voice within these practices (through addressing and responding to other voices). The access and voice projects free agents from unnecessary finalization and objectivization by oneself and others (Bakhtin 1999; Bakhtin 1990). In education, we should develop indigenous discourses of learning and develop a conceptual framework that makes analysis of diverse discourses possible. We argue that learning, as transformation of participation in a sociocultural practice to gain more access, is a better conceptual framework than learning as transformation of identity.

  9. New quarks: exotic versus strong

    OpenAIRE

    Holdom, B.

    2011-01-01

    The new quarks of a fourth family are being pushed into the strongly interacting regime due to the lower limits on their masses. The theoretical basis and experimental implications of such quarks are compared with exotic quarks.

  10. Cavity quantum electrodynamics: Beyond strong

    Science.gov (United States)

    Murch, Kater

    2017-01-01

    When light and matter are strongly coupled, they lose their distinct character and merge into a hybrid state. Three experiments explore this exotic regime using artificial atoms, with promise for quantum technologies.

  11. Strong nonlinear oscillators analytical solutions

    CERN Document Server

    Cveticanin, Livija

    2017-01-01

    This book outlines an analytical solution procedure of the pure nonlinear oscillator system, offering a solution for free and forced vibrations of the one-degree-of-freedom strong nonlinear system with constant and time variable parameter. Includes exercises.

  12. Creating and Nurturing Strong Teams.

    Science.gov (United States)

    Martin, Kaye M.

    1999-01-01

    Discusses ways to create and sustain strong teaching teams, including matching curriculum goals, complementary professional strengths, and exercise of autonomy. Elaborates the administrator's role in nurturing and supporting teamwork. (JPB)

  13. Conjoint analysis for Eucalyptus Dunnii Provenance and Genealogy Introduction Experiment in Two Places%邓恩桉种源/家系两地引种试验联合分析

    Institute of Scientific and Technical Information of China (English)

    谢红梅; 柏劲松

    2011-01-01

    To search eucalyptus dunnii provenance and fine genealogy for Hunan and other mid-subtropical zone of China, we made eucalyptus dunnii provenance and genealogy introduction experiment in two places which are Forestry Science Research Institute of Yongzhou and Lashan separately by balanced incomplete block design. The result demonstrates: there are different performance of different provenance and genealogy in the same experimental field; if volume numerical differ too much for the same provenance and genealogy, the interactive difference between provenance and genealogy region would be most pronounced. After survey on the stabili- ty of provenance and genealogy, no.158, no.181, no.128, no. 167 and other fine provenances and genealogies were identified to be with good stability and grow faster; No.177, no.160, no.146, no. 102, no.152, no.192, no.163 and other provenances and genealogies were identified to be good to grow in the place with better site conditions; No. 138, no.176, no.157, no.170, no.151 and other provenances and genealogies were identified to be appropriate for growing in the place with worse site conditions.%为了选择最适合湖南等中亚热带引种栽培的邓恩桉种源及优良家系,我们采用平衡不完全区组试验设计分别在永州市林业科学研究所和蓝山两地进行邓恩桉种源/家系引种试验。结果表明:不同种源/家系在同一试验地的表现不一,同一种源/家系在不同试验地的材积数值相差较大,种源/家系×地区的交互作用差异极显著。通过对种源/家系稳定性的测定,选出生长较快、稳定性较好的158号、181号、128号和167号等优良种源/家系,只适于在立地条件较好地方推广应用的177号、160号、146号、102号、152号、192号和165号等种源/家系,以及可以在一些立地条件相对较差地方种植的158号、176号、157号、170号和151号等种源/家系。

  14. ClassSTRONG: Classical simulations of Strong Field processes

    CERN Document Server

    Ciappina, M F; Lewenstein, M

    2013-01-01

    A set of Mathematica functions is presented to model classically two of the most important processes in strong field physics, namely high-order harmonic generation (HHG) and above-threshold ionization (ATI). Our approach is based on the numerical solution of the Newton-Lorentz equation of an electron moving on an electric field and takes advantage of the symbolic languages features and graphical power of Mathematica. Similarly as in the Strong Field Approximation (SFA), the effects of atomic potential on the motion of electron in the laser field are neglected. The SFA has proven to be an essential tool in strong field physics in the sense that it is able to predict with great precision the harmonic (in the HHG) and energy (in the ATI) limits. We have extended substantially the conventional classical simulations, where the electric field is only dependent on time, including spatial nonhomogeneous fields and spatial and temporal synthesized fields. Spatial nonhomogeneous fields appear when metal nanosystems int...

  15. The SNAP Strong Lens Survey

    Energy Technology Data Exchange (ETDEWEB)

    Marshall, P.

    2005-01-03

    Basic considerations of lens detection and identification indicate that a wide field survey of the types planned for weak lensing and Type Ia SNe with SNAP are close to optimal for the optical detection of strong lenses. Such a ''piggy-back'' survey might be expected even pessimistically to provide a catalogue of a few thousand new strong lenses, with the numbers dominated by systems of faint blue galaxies lensed by foreground ellipticals. After sketching out our strategy for detecting and measuring these galaxy lenses using the SNAP images, we discuss some of the scientific applications of such a large sample of gravitational lenses: in particular we comment on the partition of information between lens structure, the source population properties and cosmology. Understanding this partitioning is key to assessing strong lens cosmography's value as a cosmological probe.

  16. Strongly interacting ultracold polar molecules

    CERN Document Server

    Gadway, Bryce

    2016-01-01

    This paper reviews recent advances in the study of strongly interacting systems of dipolar molecules. Heteronuclear molecules feature large and tunable electric dipole moments, which give rise to long-range and anisotropic dipole-dipole interactions. Ultracold samples of dipolar molecules with long-range interactions offer a unique platform for quantum simulations and the study of correlated many-body physics. We provide an introduction to the physics of dipolar quantum gases, both electric and magnetic, and summarize the multipronged efforts to bring dipolar molecules into the quantum regime. We discuss in detail the recent experimental progress in realizing and studying strongly interacting systems of polar molecules trapped in optical lattices, with particular emphasis on the study of interacting spin systems and non-equilibrium quantum magnetism. Finally, we conclude with a brief discussion of the future prospects for studies of strongly interacting dipolar molecules.

  17. Strong Photoassociation in Ultracold Fermions

    Science.gov (United States)

    Jing, Li; Jamison, Alan; Rvachov, Timur; Ebadi, Sepher; Son, Hyungmok; Jiang, Yijun; Zwierlein, Martin; Ketterle, Wolfgang

    2016-05-01

    Despite many studies there are still open questions about strong photoassociation in ultracold gases. Photoassociation occurs only at short range and thus can be used as a tool to probe and control the two-body correlation function in an interacting many-body system and to engineer Hamiltonians using dissipation. We propose the possibility to slow down decoherence by photoassociation through the quantum Zeno effect. This can realized by shining strong photoassociation light on the superposition of the lowest two hyperfine states of Lithium 6. NSF, ARO-MURI, Samsung, NSERC.

  18. Horizontal gene transfer in chromalveolates

    Directory of Open Access Journals (Sweden)

    Bhattacharya Debashish

    2007-09-01

    Full Text Available Abstract Background Horizontal gene transfer (HGT, the non-genealogical transfer of genetic material between different organisms, is considered a potentially important mechanism of genome evolution in eukaryotes. Using phylogenomic analyses of expressed sequence tag (EST data generated from a clonal cell line of a free living dinoflagellate alga Karenia brevis, we investigated the impact of HGT on genome evolution in unicellular chromalveolate protists. Results We identified 16 proteins that have originated in chromalveolates through ancient HGTs before the divergence of the genera Karenia and Karlodinium and one protein that was derived through a more recent HGT. Detailed analysis of the phylogeny and distribution of identified proteins demonstrates that eight have resulted from independent HGTs in several eukaryotic lineages. Conclusion Recurring intra- and interdomain gene exchange provides an important source of genetic novelty not only in parasitic taxa as previously demonstrated but as we show here, also in free-living protists. Investigating the tempo and mode of evolution of horizontally transferred genes in protists will therefore advance our understanding of mechanisms of adaptation in eukaryotes.

  19. PREFACE: Strongly Coupled Coulomb Systems Strongly Coupled Coulomb Systems

    Science.gov (United States)

    Neilson, David; Senatore, Gaetano

    2009-05-01

    This special issue contains papers presented at the International Conference on Strongly Coupled Coulomb Systems (SCCS), held from 29 July-2 August 2008 at the University of Camerino. Camerino is an ancient hill-top town located in the Apennine mountains of Italy, 200 kilometres northeast of Rome, with a university dating back to 1336. The Camerino conference was the 11th in a series which started in 1977: 1977: Orleans-la-Source, France, as a NATO Advanced Study Institute on Strongly Coupled Plasmas (hosted by Marc Feix and Gabor J Kalman) 1982: Les Houches, France (hosted by Marc Baus and Jean-Pierre Hansen) 1986: Santa Cruz, California, USA (hosted by Forrest J Rogers and Hugh E DeWitt) 1989: Tokyo, Japan (hosted by Setsuo Ichimaru) 1992: Rochester, New York, USA (hosted by Hugh M Van Horn and Setsuo Ichimaru) 1995: Binz, Germany (hosted by Wolf Dietrich Kraeft and Manfred Schlanges) 1997: Boston, Massachusetts, USA (hosted by Gabor J Kalman) 1999: St Malo, France (hosted by Claude Deutsch and Bernard Jancovici) 2002: Santa Fe, New Mexico, USA (hosted by John F Benage and Michael S Murillo) 2005: Moscow, Russia (hosted by Vladimir E Fortov and Vladimir Vorob'ev). The name of the series was changed in 1996 from Strongly Coupled Plasmas to Strongly Coupled Coulomb Systems to reflect a wider range of topics. 'Strongly Coupled Coulomb Systems' encompasses diverse many-body systems and physical conditions. The purpose of the conferences is to provide a regular international forum for the presentation and discussion of research achievements and ideas relating to a variety of plasma, liquid and condensed matter systems that are dominated by strong Coulomb interactions between their constituents. Each meeting has seen an evolution of topics and emphases that have followed new discoveries and new techniques. The field has continued to see new experimental tools and access to new strongly coupled conditions, most recently in the areas of warm matter, dusty plasmas

  20. Strong near-epoch dependence

    Institute of Scientific and Technical Information of China (English)

    LIN Zhengyan

    2004-01-01

    We introduce a new class of dependent sequences of random variables, which is a subclass of near-epoch dependent sequences, but can also be approximated by mixing sequences. For this kind of sequences of random variables, we call them strong nearepoch dependent sequences, a p-order, p > 2, (maximum) moment inequality is established under weaker dependence sizes.

  1. Strong decays of qqq baryons

    CERN Document Server

    Bijker, R; Leviatan, A

    1997-01-01

    We study strong decays of nonstrange baryons by making use of the algebraic approach to hadron structure. Within this framework we derive closed expressions for decay widths in an elementary-meson emission model and use these to analyze the experimental data for $N^* \\rightarrow N + \\pi$, $N^* + \\pi$, $\\Delta^* \\rightarrow \\Delta + \\pi$ and $\\Delta^* \\rightarrow \\Delta +

  2. Strong coupling electroweak symmetry breaking

    Energy Technology Data Exchange (ETDEWEB)

    Barklow, T.L. [Stanford Linear Accelerator Center, Menlo Park, CA (United States); Burdman, G. [Univ. of Wisconsin, Madison, WI (United States). Dept. of Physics; Chivukula, R.S. [Boston Univ., MA (United States). Dept. of Physics

    1997-04-01

    The authors review models of electroweak symmetry breaking due to new strong interactions at the TeV energy scale and discuss the prospects for their experimental tests. They emphasize the direct observation of the new interactions through high-energy scattering of vector bosons. They also discuss indirect probes of the new interactions and exotic particles predicted by specific theoretical models.

  3. Strong metric dimension: A survey

    Directory of Open Access Journals (Sweden)

    Kratica Jozef

    2014-01-01

    Full Text Available The strong metric dimension has been a subject of considerable amount of research in recent years. This survey describes the related development by bringing together theoretical results and computational approaches, and places the recent results within their historical and scientific framework. [Projekat Ministarstva nauke Republike Srbije, br. 174010 i br. 174033

  4. Strong Decomposition of Random Variables

    DEFF Research Database (Denmark)

    Hoffmann-Jørgensen, Jørgen; Kagan, Abram M.; Pitt, Loren D.;

    2007-01-01

    A random variable X is stongly decomposable if X=Y+Z where Y=Φ(X) and Z=X-Φ(X) are independent non-degenerated random variables (called the components). It is shown that at least one of the components is singular, and we derive a necessary and sufficient condition for strong decomposability...... of a discrete random variable....

  5. 探析明清徽州家谱编修的特点%The Analysis of the Characteristics of the Huizhou Genealogy Compilation in Ming and Qing Dynasties

    Institute of Scientific and Technical Information of China (English)

    李姣

    2016-01-01

    Huizhou is famous for "state of the literature", which has the prosperous clan system .In order to a-chieve the purpose of ethnic unity , uniting and concording clansmen , people in Huizhou started compiling genealogies in lager numbers .The number of genealogies reached the highest in Ming and Qing Dynasties .In this paper , it makes use of The Huizhou genealogy rare books , the precious raw materials in the Ming and Qing Dynasties as the founda-tion, researching some significant characteristics when compiling genealogies through the extensive collection , curious analysis.All these not only offer the Huizhou descendants a better understanding of Huizhou clans , but also play an important role in understanding about Huizhou society for clansmen .%素有“东南邹鲁”、“文献之邦”之称的徽州地区宗族制度繁盛,族人为了团结族人,联宗、睦族,开始大量地编修谱牒,家谱数量达到历史之最,本文以明清时期徽州家谱善本这一宝贵的原始资料为基础,通过广泛收集、分析,研究徽州族人在编修家谱时所呈现出的一些显著性特点,为后世族人更好地认识徽州宗族、徽州社会起到了重要作用。

  6. Strongly nonlinear oscillators analytical solutions

    CERN Document Server

    Cveticanin, Livija

    2014-01-01

    This book provides the presentation of the motion of pure nonlinear oscillatory systems and various solution procedures which give the approximate solutions of the strong nonlinear oscillator equations. The book presents the original author’s method for the analytical solution procedure of the pure nonlinear oscillator system. After an introduction, the physical explanation of the pure nonlinearity and of the pure nonlinear oscillator is given. The analytical solution for free and forced vibrations of the one-degree-of-freedom strong nonlinear system with constant and time variable parameter is considered. Special attention is given to the one and two mass oscillatory systems with two-degrees-of-freedom. The criteria for the deterministic chaos in ideal and non-ideal pure nonlinear oscillators are derived analytically. The method for suppressing chaos is developed. Important problems are discussed in didactic exercises. The book is self-consistent and suitable as a textbook for students and also for profess...

  7. Kinetic mixing at strong coupling

    Science.gov (United States)

    Del Zotto, Michele; Heckman, Jonathan J.; Kumar, Piyush; Malekian, Arada; Wecht, Brian

    2017-01-01

    A common feature of many string-motivated particle physics models is additional strongly coupled U (1 )'s. In such sectors, electric and magnetic states have comparable mass, and integrating out modes also charged under U (1 ) hypercharge generically yields C P preserving electric kinetic mixing and C P violating magnetic kinetic mixing terms. Even though these extra sectors are strongly coupled, we show that in the limit where the extra sector has approximate N =2 supersymmetry, we can use formal methods from Seiberg-Witten theory to compute these couplings. We also calculate various quantities of phenomenological interest such as the cross section for scattering between visible sector states and heavy extra sector states as well as the effects of supersymmetry breaking induced from coupling to the minimal supersymmetric Standard Model.

  8. Strongly correlated systems numerical methods

    CERN Document Server

    Mancini, Ferdinando

    2013-01-01

    This volume presents, for the very first time, an exhaustive collection of those modern numerical methods specifically tailored for the analysis of Strongly Correlated Systems. Many novel materials, with functional properties emerging from macroscopic quantum behaviors at the frontier of modern research in physics, chemistry and material science, belong to this class of systems. Any technique is presented in great detail by its own inventor or by one of the world-wide recognized main contributors. The exposition has a clear pedagogical cut and fully reports on the most relevant case study where the specific technique showed to be very successful in describing and enlightening the puzzling physics of a particular strongly correlated system. The book is intended for advanced graduate students and post-docs in the field as textbook and/or main reference, but also for other researchers in the field who appreciate consulting a single, but comprehensive, source or wishes to get acquainted, in a as painless as possi...

  9. Strongly correlated systems experimental techniques

    CERN Document Server

    Mancini, Ferdinando

    2015-01-01

    The continuous evolution and development of experimental techniques is at the basis of any fundamental achievement in modern physics. Strongly correlated systems (SCS), more than any other, need to be investigated through the greatest variety of experimental techniques in order to unveil and crosscheck the numerous and puzzling anomalous behaviors characterizing them. The study of SCS fostered the improvement of many old experimental techniques, but also the advent of many new ones just invented in order to analyze the complex behaviors of these systems. Many novel materials, with functional properties emerging from macroscopic quantum behaviors at the frontier of modern research in physics, chemistry and materials science, belong to this class of systems. The volume presents a representative collection of the modern experimental techniques specifically tailored for the analysis of strongly correlated systems. Any technique is presented in great detail by its own inventor or by one of the world-wide recognize...

  10. Strong correlations in gravity and biophysics

    Science.gov (United States)

    Krotov, Dmitry

    The unifying theme of this dissertation is the use of correlations. In the first part (chapter 2), we investigate correlations in quantum field theories in de Sitter space. In the second part (chapters 3,4,5), we use correlations to investigate a theoretical proposal that real (observed in nature) transcriptional networks of biological organisms are operating at a critical point in their phase diagram. In chapter 2 we study the infrared dependence of correlators in various external backgrounds. Using the Schwinger-Keldysh formalism we calculate loop corrections to the correlators in the case of the Poincare patch and the complete de Sitter space. In the case of the Poincare patch, the loop correction modifies the behavior of the correlator at large distances. In the case of the complete de Sitter space, the loop correction has a strong dependence on the infrared cutoff in the past. It grows linearly with time, suggesting that at some point the correlations become strong and break the symmetry of the classical background. In chapter 3 we derive the signatures of critical behavior in a model organism, the embryo of Drosophila melanogaster. They are: strong correlations in the fluctuations of different genes, a slowing of dynamics, long range correlations in space, and departures from a Gaussian distribution of these fluctuations. We argue that these signatures are observed experimentally. In chapter 4 we construct an effective theory for the zero mode in this system. This theory is different from the standard Landau-Ginsburg description. It contains gauge fields (the result of the broken translational symmetry inside the cell), which produce observable contributions to the two-point function of the order parameter. We show that the behavior of the two-point function for the network of N genes is described by the action of a relativistic particle moving on the surface of the N - 1 dimensional sphere. We derive a theoretical bound on the decay of the correlations and

  11. Flavour Democracy in Strong Unification

    CERN Document Server

    Abel, S A; Abel, Steven; King, Steven

    1998-01-01

    We show that the fermion mass spectrum may naturally be understood in terms of flavour democratic fixed points in supersymmetric theories which have a large domain of attraction in the presence of "strong unification". Our approach provides an alternative to the approximate Yukawa texture zeroes of the Froggatt-Nielsen mechanism. We discuss a particular model based on a broken gauged $SU(3)_L\\times SU(3)_R$ family symmetry which illustrates our approach.

  12. Numerical micromagnetism of strong inhomogeneities

    Energy Technology Data Exchange (ETDEWEB)

    Andreas, Christian [Peter Grünberg Institut (PGI-6), Forschungszentrum Jülich GmbH, D-52428 Jülich (Germany); Institut de Physique et Chimie des Matériaux de Strasbourg, Université de Strasbourg, CNRS UMR 7504, Strasbourg (France); Gliga, Sebastian [Laboratory for Micro- and Nanotechnology, Paul Scherrer Institute, 5232 Villigen PSI (Switzerland); Laboratory for Mesoscopic Systems, Department of Materials, ETH Zurich, 8093 Zurich (Switzerland); Hertel, Riccardo, E-mail: hertel@ipcms.unistra.fr [Institut de Physique et Chimie des Matériaux de Strasbourg, Université de Strasbourg, CNRS UMR 7504, Strasbourg (France)

    2014-08-01

    The size of micromagnetic structures, such as domain walls or vortices, is comparable to the exchange length of the ferromagnet. Both, the exchange length of the stray field l{sub s} and the magnetocrystalline exchange length l{sub k}, are material-dependent quantities that usually lie in the nanometer range. This emphasizes the theoretical challenges associated with the mesoscopic nature of micromagnetism: the magnetic structures are much larger than the atomic lattice constant, but at the same time much smaller than the sample size. In computer simulations, the smallest exchange length serves as an estimate for the largest cell size admissible to prevent appreciable discretization errors. This general rule is not valid in special situations where the magnetization becomes particularly inhomogeneous. When such strongly inhomogeneous structures develop, micromagnetic simulations inevitably contain systematic and numerical errors. It is suggested to combine micromagnetic theory with a Heisenberg model to resolve such problems. We analyze cases where strongly inhomogeneous structures pose limits to standard micromagnetic simulations, arising from fundamental aspects as well as from numerical drawbacks. - Highlights: • We discuss the impact of strong inhomogeneities on micromagnetic simulations. • Analysis of fundamental and numerical errors in micromagnetic point singularities. • Numerical and methodological errors in exchange energy terms are quantified. • Suggestion to combine atomistic Heisenberg models with micromagnetism in such cases.

  13. Two evolutionary histories in the genome of rice: the roles of domestication genes.

    Directory of Open Access Journals (Sweden)

    Ziwen He

    2011-06-01

    Full Text Available Genealogical patterns in different genomic regions may be different due to the joint influence of gene flow and selection. The existence of two subspecies of cultivated rice provides a unique opportunity for analyzing these effects during domestication. We chose 66 accessions from the three rice taxa (about 22 each from Oryza sativa indica, O. sativa japonica, and O. rufipogon for whole-genome sequencing. In the search for the signature of selection, we focus on low diversity regions (LDRs shared by both cultivars. We found that the genealogical histories of these overlapping LDRs are distinct from the genomic background. While indica and japonica genomes generally appear to be of independent origin, many overlapping LDRs may have originated only once, as a result of selection and subsequent introgression. Interestingly, many such LDRs contain only one candidate gene of rice domestication, and several known domestication genes have indeed been "rediscovered" by this approach. In summary, we identified 13 additional candidate genes of domestication.

  14. Genealogy analysis of duchenne muscular dystrophy by multiplex ligation-dependent probe amplification and sequencing technology%MLPA及测序技术在DMD/BMD家系分析中的应用

    Institute of Scientific and Technical Information of China (English)

    古艳; 谢建生; 都莉; 韩春锡; 万琼

    2012-01-01

    Objective To analyze the DMD genealogy by MLPA technique in combine with DNA and cDNA sequencing technology. Methods There were 31 individuals accepted DMD gene diagnosis,including 6 DMD/BMD patients, 13 possible carriers and 6 healthy men in 2 DMD/BMD families,moreover 6 healthy women and men were selected from health examination people. Genomic DNA of the peripheral blood was extracted from the pedigrees' members with DMD. RNA was extracted from the bioptic muscle of the DMD patients and was reversed transcription to cDNA. Gene diagnosis was performed for theses pedigrees members using MLPA technique,the mutation was analyzed applying with DNA and/or cDNA sequence technique. Simultaneously,compare the effects of these methods on detecting DMD gene deletion. Results 4 patients of the first DMD family was deleted exon50,and the fetus was confirmed no DMD exons deletion. 2 patients were found deletion exon43 in the second family. MLPA analysis、DNA and cDNA sequencing technology showed the same result. Conclusion MLPA in company with DNA and cDNA sequencing technology could applied into clinical gene diagnosis for DMD.%目的 运用MLPA技术和DNA及cDNA测序技术对DMD/BMD进行家系分析,对患者、可能携带者基因诊断并探讨诊断流程的临床可行性.方法 对2个DMD/BMD家系中6例患者、13例女性可能携带者、6例男性家系成员,6例女性和男性健康对照共31例采集外周血提取DNA,运用MLPA技术分析对以上31例的DMD基因79个外显子;患者取右侧腓肠肌10~30 mg肌肉提取RNA,逆转录cDNA;分别进行DNA及cDNA序列测定,测序结果与MLPA结果进行比较.结果 经MLPA检测,家系1的4例患者均缺失DMD基因Exon50,家系2中2例患者均缺失Exon43.以上结果经肌肉cDNA测序证实了相应外显子缺失.结论 MLPA技术结合DNA及cDNA测序技术进行DMD家系分析具有可靠的临床应用价值.

  15. Disordered strongly correlated electronic systems

    Science.gov (United States)

    Javan Mard, Hossein

    Disorder can have a vast variety of consequences for the physics of phase transitions. Some transitions remain unchanged in the presence of disorder while others are completely destroyed. In this dissertation we study the effects of quenched disorder on electronic systmens at zero temperature. First, we perform variational studies of the interaction-localization problem to describe the interaction-induced renormalizations of the effective (screened) random potential seen by quasiparticles. Here we present results of careful finite-size scaling studies for the conductance of disordered Hubbard chains at half-filling and zero temperature. While our results indicate that quasiparticle wave functions remain exponentially localized even in the presence of moderate to strong repulsive interactions, we show that interactions produce a strong decrease of the characteristic conductance scale g* signaling the crossover to strong localization. This effect, which cannot be captured by a simple renormalization of the disorder strength, instead reflects a peculiar non-Gaussian form of the spatial correlations of the screened disordered potential, a hitherto neglected mechanism to dramatically reduce the impact of Anderson localization (interference) effects. Second, we formulate a strong-disorder renormalization-group (SDRG) approach to study the beta function of the tight-binding model in one dimension with both diagonal and off-diagonal disorder for states at the band center. We show that the SDRG method, when used to compute transport properties, yields exact results since it is identical to the transfer matrix method. The beta function is shown to be universal when only off-diagonal disorder is present even though single-parameter scaling is known to be violated. A different single-parameter scaling theory is formulated for this particular (particle-hole symmetric) case. Upon breaking particle-hole symmetry (by adding diagonal disorder), the beta function is shown to

  16. The genealogic tree of mycobacteria reveals a long-standing sympatric life into free-living protozoa.

    Directory of Open Access Journals (Sweden)

    Otmane Lamrabet

    Full Text Available Free-living protozoa allow horizontal gene transfer with and between the microorganisms that they host. They host mycobacteria for which the sources of transferred genes remain unknown. Using BLASTp, we searched within the genomes of 15 mycobacteria for homologous genes with 34 amoeba-resistant bacteria and the free-living protozoa Dictyostelium discoideum. Subsequent phylogenetic analysis of these sequences revealed that eight mycobacterial open-reading frames (ORFs were probably acquired via horizontal transfer from beta- and gamma-Proteobacteria and from Firmicutes, but the transfer histories could not be reliably established in details. One further ORF encoding a pyridine nucleotide disulfide oxidoreductase (pyr-redox placed non-tuberculous mycobacteria in a clade with Legionella spp., Francisella spp., Coxiella burnetii, the ciliate Tetrahymena thermophila and D. discoideum with a high reliability. Co-culturing Mycobacterium avium and Legionella pneumophila with the amoeba Acanthamoeba polyphaga demonstrated that these two bacteria could live together in amoebae for five days, indicating the biological relevance of intra-amoebal transfer of the pyr-redox gene. In conclusion, the results of this study support the hypothesis that protists can serve as a source and a place for gene transfer in mycobacteria.

  17. PREFACE: Strongly correlated electron systems Strongly correlated electron systems

    Science.gov (United States)

    Saxena, Siddharth S.; Littlewood, P. B.

    2012-07-01

    This special section is dedicated to the Strongly Correlated Electron Systems Conference (SCES) 2011, which was held from 29 August-3 September 2011, in Cambridge, UK. SCES'2011 is dedicated to 100 years of superconductivity and covers a range of topics in the area of strongly correlated systems. The correlated electronic and magnetic materials featured include f-electron based heavy fermion intermetallics and d-electron based transition metal compounds. The selected papers derived from invited presentations seek to deepen our understanding of the rich physical phenomena that arise from correlation effects. The focus is on quantum phase transitions, non-Fermi liquid phenomena, quantum magnetism, unconventional superconductivity and metal-insulator transitions. Both experimental and theoretical work is presented. Based on fundamental advances in the understanding of electronic materials, much of 20th century materials physics was driven by miniaturisation and integration in the electronics industry to the current generation of nanometre scale devices. The achievements of this industry have brought unprecedented advances to society and well-being, and no doubt there is much further to go—note that this progress is founded on investments and studies in the fundamentals of condensed matter physics from more than 50 years ago. Nevertheless, the defining challenges for the 21st century will lie in the discovery in science, and deployment through engineering, of technologies that can deliver the scale needed to have an impact on the sustainability agenda. Thus the big developments in nanotechnology may lie not in the pursuit of yet smaller transistors, but in the design of new structures that can revolutionise the performance of solar cells, batteries, fuel cells, light-weight structural materials, refrigeration, water purification, etc. The science presented in the papers of this special section also highlights the underlying interest in energy-dense materials, which

  18. Strongly interacting light dark matter

    Energy Technology Data Exchange (ETDEWEB)

    Bruggisser, Sebastian [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Riva, Francesco; Urbano, Alfredo [CERN, Geneva (Switzerland). Theoretical Physics Dept.

    2016-07-15

    In the presence of approximate global symmetries that forbid relevant interactions, strongly coupled light Dark Matter (DM) can appear weakly coupled at small-energy and generate a sizable relic abundance. Fundamental principles like unitarity restrict these symmetries to a small class, where the leading interactions are captured by effective operators up to dimension-8. Chiral symmetry, spontaneously broken global symmetries and non-linearly realized supersymmetry are examples of this. Their DM candidates (composite fermions, pseudo-Nambu-Goldstone Bosons and Goldstini) are interesting targets for LHC missing-energy searches.

  19. Strongly Interacting Light Dark Matter

    CERN Document Server

    Bruggisser, Sebastian; Urbano, Alfredo

    2016-01-01

    In the presence of approximate global symmetries that forbid relevant interactions, strongly coupled light Dark Matter (DM) can appear weakly coupled at small energy and generate a sizable relic abundance. Fundamental principles like unitarity restrict these symmetries to a small class, where the leading interactions are captured by effective operators up to dimension-8. Chiral symmetry, spontaneously broken global symmetries and non-linearly realized supersymmetry are examples of this. Their DM candidates (composite fermions, pseudo Nambu-Goldstone Bosons and Goldstini) are interesting targets for LHC missing-energy searches.

  20. Scalar strong interaction hadron theory

    CERN Document Server

    Hoh, Fang Chao

    2015-01-01

    The scalar strong interaction hadron theory, SSI, is a first principles' and nonlocal theory at quantum mechanical level that provides an alternative to low energy QCD and Higgs related part of the standard model. The quark-quark interaction is scalar rather than color-vectorial. A set of equations of motion for mesons and another set for baryons have been constructed. This book provides an account of the present state of a theory supposedly still at its early stage of development. This work will facilitate researchers interested in entering into this field and serve as a basis for possible future development of this theory.

  1. Strong Completeness for Markovian Logics

    DEFF Research Database (Denmark)

    Kozen, Dexter; Mardare, Radu Iulian; Panangaden, Prakash

    2013-01-01

    In this paper we present Hilbert-style axiomatizations for three logics for reasoning about continuous-space Markov processes (MPs): (i) a logic for MPs defined for probability distributions on measurable state spaces, (ii) a logic for MPs defined for sub-probability distributions and (iii) a logic...... defined for arbitrary distributions. These logics are not compact so one needs infinitary rules in order to obtain strong completeness results. We propose a new infinitary rule that replaces the so-called Countable Additivity Rule (CAR) currently used in the literature to address the problem of proving...

  2. Is Global Strong Wind Declining?

    Institute of Scientific and Technical Information of China (English)

    Zongci Zhao; Yong Luo; Ying Jiang

    2011-01-01

    1 Introduction To mitigate global warming,the call for using clean energy,developing low-carbon economy and initiating green environmental protection has never been louder.One of the hot topics,which has received widespread attentions in the world,is the development and utilization of wind energy.At the same time,some of the climate change studies focus on the changes in global wind speeds and strong winds which are related to wind energy utilization.The issues,which are the subjects of these studies,can be summarized in the following.

  3. The spatial information query and visualization research for genealogy based on GIS%基于GIS的族谱空间信息查询与可视化研究

    Institute of Scientific and Technical Information of China (English)

    周琳; 景海涛; 贾中星; 李伟

    2015-01-01

    Genealogy is the life history of a family ,w hich records the origin and development of a family and has great research value .It is an important task in the field of GIS socialization study on how to realize the information of family tree space in the field of socialization of GIS .In this paper ,the simulation family tree from Henan Province is selected as the research object by adopting the idea of “Su” genealogy .And the paper uses GIS technology to integrate massive family trees data ,builds map spatial database and basic information table of family member .Based on the platform of ArcGIS Engine 9.3 and SQL Server ,the function of genealogy spatial query and migration route visualization for family members are achieved .The information system of genealogy GIS provides new idea ,methods and technology for the genealogy study .%族谱是一个家族的生命史,记录家族的起源和发展,具有很大的研究价值。如何实现族谱空间信息化,是GIS社会化研究领域的一个重要课题。文中选择河南省域内某模拟族谱作为研究对象,运用GIS技术整合海量族谱数据,建立地图空间数据库和家族成员基本信息表,以ArcGIS Engine 9.3、SQL Server为平台,开发族谱GIS信息系统,实现族谱空间查询及家族成员迁徙路线可视化等功能。族谱G IS信息系统为族谱研究提供新的思路、方法和技术。

  4. Strong sequences and independent sets

    Directory of Open Access Journals (Sweden)

    Joanna Jureczko

    2016-05-01

    Full Text Available A family $\\mathcal{S} \\in \\mathcal{P}(\\omega$ is \\textit{an independent family} if for each pair $\\mathcal{A, B}$ of disjoint finite subsets of $\\mathcal{S}$ the set $\\bigcap \\mathcal{A} \\cap (\\omega \\setminus \\bigcup \\mathcal{B}$ is nonempty. The fact that there is an independent family on $\\omega$ of size continuum was proved by Fichtenholz and Kantorowicz in \\cite{FK}. If we substitute $\\mathcal{P}(\\omega$ by a set $(X, r$ with arbitrary relation \\textit{r} it is natural question about existence and length of an independent set on $(X, r$. In this paper special assumptions of such existence will be considered. On the other hand in 60s' of the last century the strong sequences method was introduced by Efimov. He used it for proving some famous theorems in dyadic spaces like: Marczewski theorem on cellularity, Shanin theorem on a calibre, Esenin-Volpin theorem and others. In this paper there will be considered: length of strong sequences, the length of independent sets and other well known cardinal invariants and there will be examined inequalities among them.

  5. Interference Channels with Strong Secrecy

    CERN Document Server

    He, Xiang

    2009-01-01

    It is known that given the real sum of two independent uniformly distributed lattice points from the same nested lattice codebook, the eavesdropper can obtain at most 1 bit of information per channel regarding the value of one of the lattice points. In this work, we study the effect of this 1 bit information on the equivocation expressed in three commonly used information theoretic measures, i.e., the Shannon entropy, the Renyi entropy and the min entropy. We then demonstrate its applications in an interference channel with a confidential message. In our previous work, we showed that nested lattice codes can outperform Gaussian codes for this channel when the achieved rate is measured with the weak secrecy notion. Here, with the Renyi entropy and the min entropy measure, we prove that the same secure degree of freedom is achievable with the strong secrecy notion as well. A major benefit of the new coding scheme is that the strong secrecy is generated from a single lattice point instead of a sequence of lattic...

  6. Intracontinental basins and strong earthquakes

    Institute of Scientific and Technical Information of China (English)

    邓起东; 高孟潭; 赵新平; 吴建春

    2004-01-01

    The September 17, 1303 Hongtong M=8 earthquake occurred in Linfen basin of Shanxi down-faulted basin zone. It is the first recorded M=8 earthquake since the Chinese historical seismic records had started and is a great earthquake occurring in the active intracontinental basin. We had held a Meeting of the 700th Anniversary of the 1303 Hongtong M=8 Earthquake in Shanxi and a Symposium on Intracontinental Basins and Strong Earthquakes in Taiyuan City of Shanxi Province on September 17~18, 2003. The articles presented on the symposium discussed the relationships between active intracontinental basins of different properties, developed in different regions, including tensional graben and semi-graben basins in tensile tectonic regions, compression-depression basins and foreland basins in compressive tectonic regions and pull-apart basins in strike-slip tectonic zones, and strong earthquakes in China. In this article we make a brief summary of some problems. The articles published in this special issue are a part of the articles presented on the symposium.

  7. Organization of immunoglobulin genes.

    Science.gov (United States)

    Tonegawa, S; Brack, C; Hozumi, N; Pirrotta, V

    1978-01-01

    The nucleotide-sequence determination of a cloned, embryonic Vlambda gene directly demonstrated that V genes are separate from a corresponding C gene in embryonic cells. Analysis by restriction enzymes of total cellular DNA from various sources strongly suggested that the two separate immunoglobulin genes become continuous during differentiation of B lymphocytes. There seems to be a strict correlation between the joining event and activation of the joined genes. Cloning of more immunoglobulin genes from embryo and plasma cells will not only provide direct demonstration of such a gene-joining event but also help in the elucidation of a possible relationship of the event to gene activation mechanisms.

  8. EDITORIAL: Strongly correlated electron systems Strongly correlated electron systems

    Science.gov (United States)

    Ronning, Filip; Batista, Cristian

    2011-03-01

    Strongly correlated electrons is an exciting and diverse field in condensed matter physics. This special issue aims to capture some of that excitement and recent developments in the field. Given that this issue was inspired by the 2010 International Conference on Strongly Correlated Electron Systems (SCES 2010), we briefly give some history in order to place this issue in context. The 2010 International Conference on Strongly Correlated Electron Systems was held in Santa Fe, New Mexico, a reunion of sorts from the 1989 International Conference on the Physics of Highly Correlated Electron Systems that also convened in Santa Fe. SCES 2010—co-chaired by John Sarrao and Joe Thompson—followed the tradition of earlier conferences, in this century, hosted by Buzios (2008), Houston (2007), Vienna (2005), Karlsruhe (2004), Krakow (2002) and Ann Arbor (2001). Every three years since 1997, SCES has joined the International Conference on Magnetism (ICM), held in Recife (2000), Rome (2003), Kyoto (2006) and Karlsruhe (2009). Like its predecessors, SCES 2010 topics included strongly correlated f- and d-electron systems, heavy-fermion behaviors, quantum-phase transitions, non-Fermi liquid phenomena, unconventional superconductivity, and emergent states that arise from electronic correlations. Recent developments from studies of quantum magnetism and cold atoms complemented the traditional subjects and were included in SCES 2010. 2010 celebrated the 400th anniversary of Santa Fe as well as the birth of astronomy. So what's the connection to SCES? The Dutch invention of the first practical telescope and its use by Galileo in 1610 and subsequent years overturned dogma that the sun revolved about the earth. This revolutionary, and at the time heretical, conclusion required innovative combinations of new instrumentation, observation and mathematics. These same combinations are just as important 400 years later and are the foundation of scientific discoveries that were discussed

  9. “王化”背景下的族谱编撰与身份建构——贵州清水江下游清代苗侗家谱研究%Genealogy Compiling and Identity Construction in the Context of the Royal State: A Research of Miao and Dong Genealogies in the Lower Reaches of the Qingshui River in Guizhou

    Institute of Scientific and Technical Information of China (English)

    龙泽江; 李斌; 吴才茂

    2012-01-01

    以田野调查所收集的大量清水江下游地区清代和民国版本的苗族侗族家谱为中心,考察了清代清水江下游苗族侗族的建祠修谱、移民记忆、祖先祭祀等宗族活动。认为清代清水江下游地区兴起的以儒家伦理思想为宗旨的宗族制度是边缘社会土著族群建构正统文化身份的普遍策略,同时也是王朝国家推行教化政策,建构边疆社会秩序的重要工具。%Focused on a large number of Miao and Dong genealogies from the Qing Dynasty and the Republic of China collected through fieldwork, the present study is to make a survey of the activities of Miao and Dong clans in the lower reaches area of the Qingshui River in the Qing Dynasty in terms of ancestral hall constructions, genealogy compiling, immigrant memories, ancestor worship and so on. It is concluded that the clan system centered in Confucian ethics was not only the general strategy of orthodox cultural identity construction of the indigenous clans of the marginal social communities in the area, but also an important tool of the royal state to implement its enlightenment policy and to maintain the social order of border areas in the Qing Dynasty.

  10. Ética y medicina en Michel Foucault: la dimensión humanística de la medicina a partir de una genealogía de la moral Ethics and medicine in Michel Foucault: the humanistic dimension of medicine derived from a genealogy of morality

    Directory of Open Access Journals (Sweden)

    Benjamim Gomes

    2005-12-01

    Full Text Available Este trabajo presenta una tesis doctoral leída en la Universidad de Salamanca y basada en los escritos de la última década de Foucault. Si escribiendo la Historia de la sexualidad su objetivo fue hacer una genealogía de la ética, analizándola, junto con los demás escritos suyos, mi objetivo es enseñar su última aportación a la historia de la medicina. Él parte de una concepción de poder sobre los demás hacia una concepción de poder sobre uno mismo, espacio exclusivo de la antigua moral griega. Como pensador que busca comprender los problemas de hoy yendo a sus raíces, más que historia Foucault hace filosofía de la historia. Considerado un antihumanista, él nos deja el retrato de una medicina absolutamente ético-humanística.The article presents the results of a doctoral dissertation defended at the Universidad de Salamanca, based on Foucault's final decade of writings. If Foucault's goal in writing The History of Sexuality was to fashion a genealogy of ethics, my goal in analyzing this book, along with his other writings, is to demonstrate his last contribution to the history of medicine. He moves from a conception of power over others towards a conception of power over oneself, an exclusive terrain of ancient Greek morality. As a thinker who tries to understand today's problems by going to their roots, Foucault develops less a history than a philosophy of history. Considered an anti-humanist, he leaves us with a portrait of a wholly ethical-humanistic medicine.

  11. Tailoring strong lensing cosmographic observations

    Science.gov (United States)

    Linder, Eric V.

    2015-04-01

    Strong lensing time delay cosmography has excellent complementarity with other dark energy probes and will soon have abundant systems detected. We investigate two issues in the imaging and spectroscopic follow-up required to obtain the time delay distance. The first is optimization of spectroscopic resources. We develop a code to optimize the cosmological leverage under the constraint of constant spectroscopic time and find that sculpting the lens system redshift distribution can deliver a 40% improvement in dark energy figure of merit. The second is the role of systematics, correlated between different quantities of a given system or model errors common to all systems. We show how the levels of different systematics affect the cosmological parameter estimation and derive guidance for the fraction of double image vs quad image systems to follow as a function of differing systematics between them.

  12. Breathers in strongly anharmonic lattices.

    Science.gov (United States)

    Rosenau, Philip; Pikovsky, Arkady

    2014-02-01

    We present and study a family of finite amplitude breathers on a genuinely anharmonic Klein-Gordon lattice embedded in a nonlinear site potential. The direct numerical simulations are supported by a quasilinear Schrodinger equation (QLS) derived by averaging out the fast oscillations assuming small, albeit finite, amplitude vibrations. The genuinely anharmonic interlattice forces induce breathers which are strongly localized with tails evanescing at a doubly exponential rate and are either close to a continuum, with discrete effects being suppressed, or close to an anticontinuum state, with discrete effects being enhanced. Whereas the D-QLS breathers appear to be always stable, in general there is a stability threshold which improves with spareness of the lattice.

  13. Strong Langmuir turbulence at Jupiter?

    Science.gov (United States)

    Cairns, Iver H.; Robinson, P. A.

    1992-01-01

    Langmuir wave packets with short scale lengths less than an approximately equal to 100 lambda e have been observed in Jupiter's foreshock. Theoretical constraints on the electric fields and scale sizes of collapsing wave packets are summarized, extended and placed in a form suitable for easy comparison with Voyager and Ulysses data. The published data are reviewed and possible instrumental underestimation of fields discussed. New upper limits for the fields of the published wave packets are estimated. Wave packets formed at the nucleation scale from the observed large-scale fields cannot collapse because they are disrupted before collapse occurs. The published wave packets are quantitatively inconsistent with strong turbulence collapse. Strict constraints exist for more intense wave packets to be able to collapse: E greater than or approximately equals to 1-8 mV/m for scales less than or approximately equal to 100 lambda e. Means for testing these conclusions using Voyager and Ulysses data are suggested.

  14. Strong embeddings of minimum genus

    CERN Document Server

    Mohar, Bojan

    2009-01-01

    A "folklore conjecture, probably due to Tutte" (as described in [P.D. Seymour, Sums of circuits, Graph theory and related topics (Proc. Conf., Univ. Waterloo, 1977), pp. 341-355, Academic Press, 1979]) asserts that every bridgeless cubic graph can be embedded on a surface of its own genus in such a way that the face boundaries are cycles of the graph. In this paper we consider closed 2-cell embeddings of graphs and show that certain (cubic) graphs (of any fixed genus) have closed 2-cell embedding only in surfaces whose genus is very large (proportional to the order of these graphs), thus providing plethora of strong counterexamples to the above conjecture. The main result yielding such counterexamples may be of independent interest.

  15. Electrophoresis in strong electric fields.

    Science.gov (United States)

    Barany, Sandor

    2009-01-01

    Two kinds of non-linear electrophoresis (ef) that can be detected in strong electric fields (several hundred V/cm) are considered. The first ("classical" non-linear ef) is due to the interaction of the outer field with field-induced ionic charges in the electric double layer (EDL) under conditions, when field-induced variations of electrolyte concentration remain to be small comparatively to its equilibrium value. According to the Shilov theory, the non-linear component of the electrophoretic velocity for dielectric particles is proportional to the cubic power of the applied field strength (cubic electrophoresis) and to the second power of the particles radius; it is independent of the zeta-potential but is determined by the surface conductivity of particles. The second one, the so-called "superfast electrophoresis" is connected with the interaction of a strong outer field with a secondary diffuse layer of counterions (space charge) that is induced outside the primary (classical) diffuse EDL by the external field itself because of concentration polarization. The Dukhin-Mishchuk theory of "superfast electrophoresis" predicts quadratic dependence of the electrophoretic velocity of unipolar (ionically or electronically) conducting particles on the external field gradient and linear dependence on the particle's size in strong electric fields. These are in sharp contrast to the laws of classical electrophoresis (no dependence of V(ef) on the particle's size and linear dependence on the electric field gradient). A new method to measure the ef velocity of particles in strong electric fields is developed that is based on separation of the effects of sedimentation and electrophoresis using videoimaging and a new flowcell and use of short electric pulses. To test the "classical" non-linear electrophoresis, we have measured the ef velocity of non-conducting polystyrene, aluminium-oxide and (semiconductor) graphite particles as well as Saccharomice cerevisiae yeast cells as a

  16. eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

    DEFF Research Database (Denmark)

    Muller, J; Szklarczyk, D; Julien, P;

    2010-01-01

    The identification of orthologous relationships forms the basis for most comparative genomics studies. Here, we present the second version of the eggNOG database, which contains orthologous groups (OGs) constructed through identification of reciprocal best BLAST matches and triangular linkage clu...

  17. Genealogías culturales e Historias de Familia en Oaxaca: Diseño epistémico, estrategia metodológica y reflexividad

    Directory of Open Access Journals (Sweden)

    Karla Y. Covarrubias

    2014-01-01

    Full Text Available El objetivo de este artículo metodológico es exponer una experiencia colectiva de investigación desarrollada a la distancia entre 2006 y 2011 por un grupo de trabajo conformado por una investigadora de la Universidad de Colima y cuatro de la Universidad Mesoamericana de la ciudad de Oaxaca. Primero exponemos los antecedentes del proyecto la Formación de las Ofertas Culturales y sus Públicos en México (FOCYP, al que se sujeta esta experiencia académica. Enseguida presentamos la investigación sobre Genealogías culturales e Historias de Familia en Oaxaca y referimos su diseño de investigación: el problema de investigación; la construcción del objeto de estudio; la pregunta de conocimiento; las preguntas particulares; los objetivos; la estrategia metodológica; el enfoque teórico-conceptual; y la producción de datos. Compartimos, además, la forma en que trabajamos nuestros aciertos y aprendizajes como grupo de investigación bajo un taller de hermenéutica colectiva.

  18. Adapting the forms of yesterday to the functions of today and the needs of tomorrow: a genealogical case study of clinical teaching units in Canada.

    Science.gov (United States)

    Schrewe, Brett; Pratt, Daniel D; McKellin, William H

    2016-05-01

    Emergent discourses of social responsibility and accountability have in part fuelled the expansion of distributed medical education (DME). In addition to its potential for redressing physician maldistribution, DME has conferred multiple unexpected educational benefits. In several countries, its recent rise has occurred around the boundaries of traditional medical education practices. Canada has been no exception, with DME proliferating against a backdrop of its longstanding central node, the clinical teaching unit (CTU). The CTU first appeared just over 50 years ago with its position in Canadian health care largely taken-for-granted. Given the increasing prominence of DME, however, it is timely to reconsider what the place of tertiary centre-based practices such as the CTU might be in shifting medical education systems. From a genealogical perspective, it becomes clear that the CTU did not just "happen". Rather, its creation was made possible by multiple interrelated cultural, social, and political changes in Canadian society that, while subtle, are powerfully influential. Making them visible offers a better opportunity to harmonize the benefits of longstanding entities such as the CTU with novel practices such as DME. In so doing, the medical education field may sidestep the pitfalls of investing significant resources that may only produce superficial changes while unwittingly obstructing deeper transformations and improvements. Although this work is refracted through a Canadian prism, reconceptualizing the overall design of medical education systems to take advantage of both tradition and innovation is a persistent challenge across the international spectrum, resistant to tests of time and constraints of context.

  19. Nietzsche's Genealogy of Morality and the changing boundaries of medicine, psychiatry and psychiatric and mental health nursing practice: a slave revolt?

    Science.gov (United States)

    Biley, F C

    2010-10-01

    The main constructions in Nietzsche's On the Genealogy of Morality (1994) are employed in order to explore the changes in mental health care that have been recently taking place. Characterized by boundaries that define the objectivity of scientific method, the biological stratum or the area of concern (disease and the disembodied being) and the professional distance that is maintained in the healthcare encounter, the noble morality of contemporary allopathic (Western) mental health care practice appears to be being challenged, in an act of ressentiment, by the slave morality of society, inverting values and beliefs that have previously been held. Mental health care paternalism may be in the process of giving way to consumer sovereignty, patient participation in decision making and the re-discovery of the embodied being at the centre of the healthcare encounter. Nietzsche warns that the dominance of slave morality and the inversion of moral values (what was a quality that was held by the nobles and regarded as good) - that is, objectivity and mental health care paternalism - becomes bad; and what was a quality held by the slaves and regarded as bad - subjectivity - becomes good, may ultimately be detrimental to the advancement of society.

  20. Review: Walburga Freitag (2005. Contergan. Eine genealogische Studie des Zusammenhangs wissenschaftlicher Diskurse und biographischer Erfahrungen [Contergan. A Genealogical Study on Scientific Discourse and Biography

    Directory of Open Access Journals (Sweden)

    Anne Klein

    2006-03-01

    Full Text Available In this genealogical study, Walburga FREITAG explores the conditions of subjectivity-building in relation to the powerful medical discourse on Contergan. The discourse theory of Michel FOUCAULT dominates the key words for the empirical research: discourse, knowledge, power and body. The study aims to describe a transformation process, starting as a "knowledge object" and ending as a "knowledge subject." Methodologically based on grounded theory, the study consists of two discourse-analytical reconstructions: one concerning the scientific foundations of inclusion and exclusion, and the other dealing with the personal experience of discrimination and emancipation. By juxtaposing the medical opinion and the biographical "true" knowledge Walburga FREITAG succeeds in drawing a picture of the moral grammar and the historical-political meaning of this social conflict. The connection of discourse analysis and biographical narratives is not only methodologically innovative but also produces new knowledge concerning the discursive relation of society, subjectivity and science. URN: urn:nbn:de:0114-fqs0602150