Mercury in birds of San Francisco Bay-Delta, California: trophic pathways, bioaccumulation, and ecotoxicological risk to avian reproduction

Science.gov (United States)

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Heinz, Gary; De La Cruz, Susan E. W.; Takekawa, John Y.; Miles, A. Keith; Adelsbach, Terrence L.; Herzog, Mark P.; Bluso-Demers, Jill D.; Demers, Scott A.; Herring, Garth; Hoffman, David J.; Hartman, Christopher A.; Willacker, James J.; Suchanek, Thomas H.; Schwarzbach, Steven E.; Maurer, Thomas C.

2014-01-01

San Francisco Bay Estuary in northern California has a legacy of mercury contamination, which could reduce the health and reproductive success of waterbirds in the estuary. The goal of this study was to use an integrated field and laboratory approach to evaluate the risks of mercury exposure to birds in the estuary. We examined mercury bioaccumulation, and other contaminants of concern, in five waterbird species that depend heavily on San Francisco Bay Estuary for foraging and breeding habitat: American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), Forster’s terns (Sterna forsteri), Caspian terns (Hydroprogne caspia), and surf scoters (Melanitta perspicillata). These species have different foraging habitats and diets that represent three distinct foraging guilds within the estuary’s food web. In this report, we provide an integrated synthesis of the primary findings from this study and results are synthesized from 54 peer-reviewed publications generated to date with other unpublished results.

Waterbird nest monitoring program in San Francisco Bay (2005-10)

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Ackerman, Joshua T.; Herzog, Mark P.

2012-01-01

Historically, Forster’s Terns (Sterna forsteri), American Avocets (Recurvirostra americana), and Black-necked Stilts (Himantopus mexicanus) were uncommon residents of San Francisco Bay, California (Grinnell and others, 1918; Grinnell and Wythe, 1927; Sibley, 1952). Presently, however, avocets and stilts are the two most abundant breeding shorebirds in San Francisco Bay (Stenzel and others, 2002; Rintoul and others, 2003). More than 4,000 avocets and 1,000 stilts, roughly 20 percent of their San Francisco Bay wintering populations, breed within the estuary, making San Francisco Bay the largest breeding area for these species on the Pacific Coast (Stenzel and others, 2002; Rintoul and others, 2003). Forster’s Terns were first observed breeding in the San Francisco Bay in 1948 (110 nests); they had increased to over 4000 individuals by the 1980s (Sibley, 1952; Gill, 1977; Harvey and others, 1992; Carter and others, 1990) and were estimated at 2000–3000 for 1998–2002; (Strong and others, 2004).It is hypothesized that the relatively large size of the current waterbird breeding populations is a result of the creation of artificial salt evaporation ponds from the 1930s through the 1950s (Gill, 1977; Goals Project, 1999). Until recently, these salt ponds and associated islands used by waterbirds for nesting have been managed relatively similarly and have supported large breeding waterbird populations. Recently, the South Bay Salt Pond Restoration Project has implemented plans to convert 50–90 percent of the 15,000 acres of salt ponds in the South San Francisco Bay back to tidal marsh habitat. Therefore, there is concern that the Restoration Project, while benefiting other native species, could negatively influence local breeding populations of waterbirds that are reliant on salt pond habitats for both breeding and foraging. A primary goal of the South Bay Salt Pond Restoration Project is to maintain current breeding waterbird populations (South Bay Salt Pond Long

Microbial biogeography of San Francisco Bay sediments

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Lee, J. A.; Francis, C. A.

2014-12-01

The largest estuary on the west coast of North America, San Francisco Bay is an ecosystem of enormous biodiversity, and also enormous human impact. The benthos has experienced dredging, occupation by invasive species, and over a century of sediment input as a result of hydraulic mining. Although the Bay's great cultural and ecological importance has inspired numerous surveys of the benthic macrofauna, to date there has been almost no investigation of the microbial communities on the Bay floor. An understanding of those microbial communities would contribute significantly to our understanding of both the biogeochemical processes (which are driven by the microbiota) and the physical processes (which contribute to microbial distributions) in the Bay. Here, we present the first broad survey of bacterial and archaeal taxa in the sediments of the San Francisco Bay. We conducted 16S rRNA community sequencing of bacteria and archaea in sediment samples taken bimonthly for one year, from five sites spanning the salinity gradient between Suisun and Central Bay, in order to capture the effect of both spatial and temporal environmental variation on microbial diversity. From the same samples we also conducted deep sequencing of a nitrogen-cycling functional gene, nirS, allowing an assessment of evolutionary diversity at a much finer taxonomic scale within an important and widespread functional group of bacteria. We paired these sequencing projects with extensive geochemical metadata as well as information about macrofaunal distribution. Our data reveal a diversity of distinct biogeographical patterns among different taxa: clades ubiquitous across sites; clades that respond to measurable environmental drivers; and clades that show geographical site-specificity. These community datasets allow us to test the hypothesis that salinity is a major driver of both overall microbial community structure and community structure of the denitrifying bacteria specifically; and to assess

Insights into microbial communities involved in mercury methylation in the San Francisco Bay estuary

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Machak, C.; Francis, C. A.

2013-12-01

San Francisco Bay (SFB) estuary is the largest estuary on the western coast of the United States, draining a watershed covering more than one third of the state of California. Mercury (Hg) contamination in SFB, as a result of gold and mercury mining in the Coast Range and Sierra Nevada region, has been observed for at least 150 years. Additional sources of Hg contamination to SFB come from active oil refineries, manufacturing, and wastewater treatment plants in the area. Concentrations of methylmercury in the sediment at the time of sample collection for the present study ranged from 0.011-3.88 μg/kg (dry weight). At some sites, the concentration exceeds wetland toxicity limits, posing a threat to the health of the ecosystem and potentially endangering humans that use the estuary for food and recreation. This study attempts to understand the factors that control the transformation of Hg to methylmercury by microorganisms in aquatic sediments, where the majority of Hg methylation is known to occur. Under anoxic conditions, some sulfate- and iron-reducing bacteria have the capacity to transform Hg into methylmercury. To better understand the microbial communities involved in Hg methylation, an extensive library of 16S rRNA sequences was generated (via Illumina sequencing) from sediment samples at 20 sites throughout the SFB estuary. In addition to genomic data, we have access to a massive database of geochemical measurements made by the SFB Regional Monitoring Program at the sampling locations. These measurements show that our sediment samples have varying methylmercury concentrations and span gradients in porewater sulfate and Fe(III), which are the two known alternative electron acceptors for mercury-methylating anaerobic bacteria. The sampling sites also span gradients in other geochemical factors known to influence microbial community composition (and potentially Hg mercury methylation), such as available organic carbon, pH, and salinity. We will present the

Records of contaminant input to San Francisco Bay

International Nuclear Information System (INIS)

Geen, A. van; Luoma, S.N.; Hornberger, M.; Fuller, C.; Pereira, W.; Hostettler, F.; Kvenvolden, K.; Anima, R.; Ritson, P.; Flegal, A.R.

1994-01-01

San Francisco Bay, one of the few large estuaries on the West Coast of North America, was subjected to great change as mining, agriculture, industrialization and urbanization accelerated after 1849, and river flows were diverted for agriculture. Trends in contamination were evident in sediment cores analyzed from seven sites. Sedimentation rates increased with human activities. Industrialization was a greater source of contamination than mining. Nearest the mouth of the estuary, concentrations of Hg, Cu, Zn, Pb and PAH began to increase around 1900. Isotopes of Pb indicated sediments were affected by a mixture of atmospheric, industrial and erosional inputs. Peaks in some contaminants were evident since the 1950s, notably Ag, Cd in water (as recorded in foraminifers tests), and DDT. Chromium and vanadium were naturally enriched throughout the cores. Declines in metal concentrations in surface sediments were not evident. Vertical mixing could delay response of sediments to changed metal inputs. Nearer the head of the estuary, contaminant concentrations, TOC and indicators of terrigenous carbon increased sharply where 137 Cs and 239,240 Pu was present (presumably post-1950). Diversion of river flows may have affected accumulation of sediments contaminated by post-war industrialization and acceleration of agricultural development

San Francisco Bay Water Quality Improvement Fund

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EPAs grant program to protect and restore San Francisco Bay. The San Francisco Bay Water Quality Improvement Fund (SFBWQIF) has invested in 58 projects along with 70 partners contributing to restore wetlands, water quality, and reduce polluted runoff.,

Microphytobenthos potential productivity estimated in three tidal embayments of the San Francisco Bay system

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Guarini, Jean-Marc; Cloern, James E.; Edmunds, Jody L.; Gros, Philippe

2002-01-01

In this paper we describe a three-step procedure to infer the spatial heterogeneity in microphytobenthos primary productivity at the scale of tidal estuaries and embayments. The first step involves local measurement of the carbon assimilation rate of benthic microalgae to determine the parameters of the photosynthesis-irradiance (P-E) curves (using non-linear optimization methods). In the next step, a resampling technique is used to rebuild pseudo-sampling distributions of the local productivity estimates; these provide error estimates for determining the significance level of differences between sites. The third step combines the previous results with deterministic models of tidal elevation and solar irradiance to compute mean and variance of the daily areal primary productivity over an entire intertidal mudflat area within each embayment. This scheme was applied on three different intertidal mudflat regions of the San Francisco Bay estuary during autumn 1998. Microphytobenthos productivity exhibits strong (ca. 3-fold) significant differences among the major sub-basins of San Francisco Bay. This spatial heterogeneity is attributed to two main causes: significant differences in the photosynthetic competence (P-E parameters) of the microphytobenthos in the different sub-basins, and spatial differences in the phase shifts between the tidal and solar cycles controlling the exposure of intertidal areas to sunlight. The procedure is general and can be used in other estuaries to assess the magnitude and patterns of spatial variability of microphytobenthos productivity at the level of the ecosystems.

Part I, Introduction: Ecology and Regional Context of Tidal Wetlands in the San Francisco Bay National Estuarine Research Reserve

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Matthew C. Ferner

2011-12-01

Full Text Available This two-part special issue reviews the basic ecology of tidal wetlands in the San Francisco Estuary. Several articles highlight the well-preserved tracts of historic tidal marsh found at China Camp State Park and Rush Ranch Open Space Preserve. These two protected areas serve as important reference sites for wetland restoration and conservation and also comprise San Francisco Bay National Estuarine Research Reserve (SF Bay NERR. SF Bay NERR is part of the National Oceanic and Atmospheric Administration’s nationwide network of 28 estuarine research reserves (http://www.nerrs.noaa.gov that all share common goals: (1 conducting standardized long-term monitoring, (2 supporting applied environmental research, (3 providing stewardship of estuarine natural resources, and (4 linking science with decision making in pursuit of effective solutions to coastal management problems.

San Francisco Bay Long Term Management Strategy for Dredging

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The San Francisco Bay Long Term Management Strategy (LTMS) is a cooperative effort to develop a new approach to dredging and dredged material disposal in the San Francisco Bay area. The LTMS serves as the Regional Dredging Team for the San Francisco area.

33 CFR 165.1187 - Security Zones; Golden Gate Bridge and the San Francisco-Oakland Bay Bridge, San Francisco Bay...

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2010-07-01

... Limited Access Areas Eleventh Coast Guard District § 165.1187 Security Zones; Golden Gate Bridge and the... Golden Gate Bridge and the San Francisco-Oakland Bay Bridge, in San Francisco Bay, California. (b... siren, radio, flashing light, or other means, the operator of a vessel shall proceed as directed. [COTP...

Suspended sediment and sediment-associated contaminants in San Francisco Bay

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Schoellhamer, D.H.; Mumley, T.E.; Leatherbarrow, J.E.

2007-01-01

Water-quality managers desire information on the temporal and spatial variability of contaminant concentrations and the magnitudes of watershed and bed-sediment loads in San Francisco Bay. To help provide this information, the Regional Monitoring Program for Trace Substances in the San Francisco Estuary (RMP) takes advantage of the association of many contaminants with sediment particles by continuously measuring suspended-sediment concentration (SSC), which is an accurate, less costly, and more easily measured surrogate for several trace metals and organic contaminants. Continuous time series of SSC are collected at several sites in the Bay. Although semidiurnal and diurnal tidal fluctuations are present, most of the variability of SSC occurs at fortnightly, monthly, and semiannual tidal time scales. A seasonal cycle of sediment inflow, wind-wave resuspension, and winnowing of fine sediment also is observed. SSC and, thus, sediment-associated contaminants tend to be greater in shallower water, at the landward ends of the Bay, and in several localized estuarine turbidity maxima. Although understanding of sediment transport has improved in the first 10 years of the RMP, determining a simple mass budget of sediment or associated contaminants is confounded by uncertainties regarding sediment flux at boundaries, change in bed-sediment storage, and appropriate modeling techniques. Nevertheless, management of sediment-associated contaminants has improved greatly. Better understanding of sediment and sediment-associated contaminants in the Bay is of great interest to evaluate the value of control actions taken and the need for additional controls. ?? 2007 Elsevier Inc. All rights reserved.

The Role of Tidal Marsh Restoration in Fish Management in the San Francisco Estuary

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Bruce Herbold

2014-03-01

Full Text Available   Tidal marsh restoration is an important management issue in the San Francisco Estuary (estuary. Restoration of large areas of tidal marsh is ongoing or planned in the lower estuary (up to 6,000 ha, Callaway et al. 2011. Large areas are proposed for restoration in the upper estuary under the Endangered Species Act biological opinions (3,237 ha and the Bay Delta Conservation Plan (26,305 ha. In the lower estuary, tidal marsh has proven its value to a wide array of species that live within it (Palaima 2012. In the Sacramento–San Joaquin Delta (Delta, one important function ascribed to restoration of freshwater tidal marshes is that they make large contributions to the food web of fish in open waters (BDCP 2013. The Ecosystem Restoration Program ascribed a suite of ecological functions to tidal marsh restoration, including habitat and food web benefits to native fish (CDFW 2010. This background was the basis for a symposium, Tidal Marshes and Native Fishes in the Delta: Will Restoration Make a Difference? held at the University of California, Davis, on June 10, 2013. This paper summarizes conclusions the authors drew from the symposium. 

Microphytobenthic potential productivity estimated in three tidal embayments of the San Francisco Bay: A comparative study

Science.gov (United States)

Guarini, J.-M.; Cloern, James E.; Edmunds, J.

2002-01-01

In this paper we describe a three-step procedure to infer the spatial heterogeneity in microphytobenthos primary productivity at the scale of tidal estuaries and embayments. The first step involves local measurement of the carbon assimilation rate of benthic microalgae to determine the parameters of the photosynthesis-irradiance (P-E) curves (using non-linear optimization methods). In the next step, a resampling technique is used to rebuild pseudo-sampling distributions of the local productivity estimates; these provide error estimates for determining the significance level of differences between sites. The third step combines the previous results with deterministic models of tidal elevation and solar irradiance to compute mean and variance of the daily areal primary productivity over an entire intertidal mudflat area within each embayment. This scheme was applied on three different intertidal mudflat regions of the San Francisco Bay estuary during autumn 1998. Microphytobenthos productivity exhibits strong (ca. 3-fold) significant differences among the major sub-basins of San Francisco Bay. This spatial heterogeneity is attributed to two main causes: significant differences in the photosynthetic competence (P-E parameters) of the microphytobenthos in the different sub-basins, and spatial differences in the phase shifts between the tidal and solar cycles controlling the exposure of intertidal areas to sunlight. The procedure is general and can be used in other estuaries to assess the magnitude and patterns of spatial variability of microphytobenthos productivity at the level of the ecosystems.

Wave attenuation across a tidal marsh in San Francisco Bay

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Foster-Martinez, Madeline R.; Lacy, Jessica; Ferner, Matthew C.; Variano, Evan A.

2018-01-01

Wave attenuation is a central process in the mechanics of a healthy salt marsh. Understanding how wave attenuation varies with vegetation and hydrodynamic conditions informs models of other marsh processes that are a function of wave energy (e.g. sediment transport) and allows for the incorporation of marshes into coastal protection plans. Here, we examine the evolution of wave height across a tidal salt marsh in San Francisco Bay. Instruments were deployed along a cross-shore transect, starting on the mudflat and crossing through zones dominated by Spartina foliosa and Salicornia pacifica. This dataset is the first to quantify wave attenuation for these vegetation species, which are abundant in the intertidal zone of California estuaries. Measurements were collected in the summer and winter to assess seasonal variation in wave attenuation. Calculated drag coefficients of S. foliosa and S. pacifica were similar, indicating equal amounts of vegetation would lead to similar energy dissipation; however, S. pacifica has much greater biomass close to the bed (<20 cm) and retains biomass throughout the year, and therefore, it causes more total attenuation. S. foliosa dies back in the winter, and waves often grow across this section of the marsh. For both vegetation types, attenuation was greatest for low water depths, when the vegetation was emergent. For both seasons, attenuation rates across S. pacifica were the highest and were greater than published attenuation rates across similar (Spartina alterniflora) salt marshes for the comparable depths. These results can inform designs for marsh restorations and management plans in San Francisco Bay and other estuaries containing these species.

Water quality measurements in San Francisco Bay by the U.S. Geological Survey, 1969-2015.

Science.gov (United States)

Schraga, Tara S; Cloern, James E

2017-08-08

The U.S. Geological Survey (USGS) maintains a place-based research program in San Francisco Bay (USA) that began in 1969 and continues, providing one of the longest records of water-quality measurements in a North American estuary. Constituents include salinity, temperature, light extinction coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, nitrate, nitrite, ammonium, silicate, and phosphate. We describe the sampling program, analytical methods, structure of the data record, and how to access all measurements made from 1969 through 2015. We provide a summary of how these data have been used by USGS and other researchers to deepen understanding of how estuaries are structured and function differently from the river and ocean ecosystems they bridge.

An Introduction to the San Francisco Estuary Tidal Wetlands Restoration Series

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Larry R. Brown

2003-10-01

Full Text Available Restoration of tidal wetlands may provide an important tool for improving ecological health and water management for beneficial uses of the San Francisco Estuary (hereafter “Estuary”. Given the large losses of tidal wetlands from San Francisco Bay and the Sacramento-San Joaquin Delta in the last 150 years, it seems logical to assume that restoring tidal wetlands will have benefits for a variety of aquatic and terrestrial native species that have declined during the same time period. However, many other changes have also occurred in the Estuary concurrent with the declines of native species. Other factors that might be important in species declines include the effects of construction of upstream dams, large and small water diversions within the Sacramento-San Joaquin Delta, agricultural pesticides, trace elements from industrial and agricultural activities, and invasions of alien species. Discussions among researchers, managers, and stakeholders have identified a number of uncertainties regarding the potential benefits of tidal wetland restoration. The articles of the Tidal Wetlands Restoration Series address four major issues of concern. Stated as questions, these are: 1. Will tidal wetland restoration enhance populations of native fishes? 2. Will wetland restoration increase rates of methylation of mercury? 3. Will primary production and other ecological processes in restored tidal wetlands result in net export of organic carbon to adjacent habitats, resulting in enhancement of the food web? Will the carbon produced contribute to the formation of disinfection byproducts when disinfected for use as drinking water? 4. Will restored tidal wetlands provide long-term ecosystem benefits that can be sustained in response to ongoing physical processes, including sedimentation and hydrodynamics? Reducing the uncertainty surrounding these issues is of critical importance because tidal wetland restoration is assumed to be a critical tool for

A Tree-Ring Reconstruction of the Salinity Gradient in the Northern Estuary of San Francisco Bay

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David W. Stahle

2011-04-01

Full Text Available Blue oak tree-ring chronologies correlate highly with winter–spring precipitation totals over California, with Sacramento and San Joaquin river stream flow, and with seasonal variations in the salinity gradient in San Francisco Bay. The convergence of fresh and saline currents can influence turbidity, sediment accumulation, and biological productivity in the estuary. Three selected blue oak chronologies were used to develop a 625-year-long reconstruction of the seasonal salinity gradient, or low salinity zone (LSZ, which provides a unique perspective on the interannual-to-decadal variability of this important estuarine habitat indicator. The reconstruction was calibrated with instrumental LSZ data for the winter–spring season, and explains 73% of the variance in the February–June position of the LSZ from 1956 to 2003. Because this calibration period post-dates the sweeping changes that have occurred to land cover, channel morphology, and natural streamflow regimes in California, the reconstruction provides an idealized estimate for how the LSZ might have fluctuated under the seasonal precipitation variations of the past 625 years, given the modern geometry and bathymetry of the estuary and land cover across the drainage basin. The February–June season integrates precipitation and runoff variability during the cool season, and does not extend into the late-summer dry season when LSZ extremes can negatively affect Sacramento–San Joaquin Delta (Delta agriculture and some aquatic organisms. However, there is such strong inter-seasonal persistence in the instrumental LSZ data that precipitation totals during the cool season can strongly pre-condition LSZ position in late summer. The 625-year-long reconstruction indicates strong interannual and decadal variability, the frequent recurrence of consecutive 2-year LSZ maxima and minima, large-scale ocean atmospheric forcing, and an interesting asymmetrical influence of warm El Ni

A Tidally Averaged Sediment-Transport Model for San Francisco Bay, California

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Lionberger, Megan A.; Schoellhamer, David H.

2009-01-01

simulated net sedimentation in the four basins that comprise San Francisco Bay was correct, the simulations incorrectly eroded shallows while channels deposited because model surface-layer boxes span both shallows and channels, and neglect lateral variability of suspended-sediment concentration. Validation with recent (1983-2005) net sedimentation in South San Francisco Bay was poor, perhaps owing to poorly quantified sediment supply, and to invasive species that altered erosion and deposition processes. This demonstrates that deterministically predicting future sedimentation is difficult in this or any estuary for which boundary conditions are not stationary. The model would best be used as a tool for developing past and present sediment budgets, and for creating scenarios of future sedimentation that are compared to one another rather than considered a deterministic prediction.

Literature Review of Unconsolidated Sediment in San Francisco Bay and Nearby Pacific Ocean Coast

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Barry R. Keller

2009-09-01

Full Text Available A review of the geologic literature regarding sedimentation in the San Francisco Bay estuarine system shows that the main part of the bay occupies a structural tectonic depression that developed in Pleistocene time. Eastern parts, including San Pablo Bay and Suisun Bay, have had sedimentation throughout late Mesozoic and Tertiary. Carquinez Strait and the Golden Gate may represent antecedent stream erosion. Sedimentation has included estuarine, alluvial, and eolian deposition. The ages of estuarine deposition includes the modern high sea level stand and earlier Pleistocene interglacial periods. Sediment sources can be generally divided into the Coast Ranges, particularly the Franciscan Complex, and “Sierran.” Much of the estuarine system is floored by very fine sediment, with local areas of sand floor. Near the Golden Gate, sediment size decreases in both directions away from the deep channel. Bedforms include sand waves (submarine dunes, flat beds, and rock and boulders. These are interpreted in terms of dominant transport directions. Near the Golden Gate is an ebb-tidal delta on the outside (including San Francisco bar and a flood-tidal delta on the inside (parts of Central Bay. The large tidal prism causes strong tidal currents, which in the upper part of the estuary are normally much stronger than river currents, except during large floods. Cultural influences have altered conditions, including hydraulic mining debris, blasting of rocks, dredging of navigation channels, filling of the bay, and commercial sand mining. Many of these have served to decrease the tidal prism, correspondingly decreasing the strength of tidal currents.

Distribution and Genetic Structure of Fucus distichus Linnaeus 1953 (formerly F. gardneri within Central San Francisco Bay

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Stephen G. Whitaker

2017-09-01

Full Text Available doi: https://doi.org/10.15447/sfews.2017v15iss3art4Fucus distichus, a rockweed common to the mid-intertidal shoreline within the San Francisco Estuary (previously known as F. gardneri, was injured during the Cosco Busan oil spill in November 2007 and subsequent clean-up actions. Restoration planning activities are underway to help recover F. distichus at sites within central San Francisco Bay where damage occurred. As a first step, we conducted shoreline surveys during the summers of 2012–2013 to map the occurrence of this rockweed. Of the 151.73 km of rocky shoreline within the central bay, F. distichus covered 32.16 km of shoreline. The alga generally occurred in narrow bands but formed expansive beds at locations with natural, flat bedrock benches. We also observed F. distichus on artificial substrata such as seawalls and riprap, but not on pilings. Samples of F. distichus from 11 sites throughout the central / east San Francisco Bay were genetically analyzed (microsatellite genotyping. The populations analyzed (1 had low genetic diversity, (2 the frequency of homozygotes was higher than expected (suggesting high inbreeding, and (3 also displayed geographic population structure, in part driven by very small differences in the midst of extremely low within-population genetic diversity. However, these genetic data do not raise concerns for restoration methods in terms of choosing donor populations and mixing F. distichus from different sites within the central bay. The choice of donor populations should be based on practical criteria for effective restoration; individuals will nonetheless be taken from locations as nearby to donor sites as possible. Various locations throughout the central San Francisco Bay are composed of cobble or small riprap that are populated with F. distichus, which could provide efficient means of translocating rockweed for future restoration activities.

Linking human impacts within an estuary to ebb-tidal delta evolution

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Dallas, Kate L.; Barnard, Patrick L.

2009-01-01

San Francisco Bay, California, USA is among the most anthropogenically altered estuaries in the entire United States, but the impact on sediment transport to the coastal ocean has not been quantified. Analysis of four historic bathymetric surveys has revealed large changes to the morphology of the San Francisco Bar, an ebb-tidal delta at the mouth of the San Francisco Bay. From 1873 to 2005 the bar eroded an average of 80 cm, which equates to a total volume loss of 100 + 65 x 106 m3 of sediment. Comparison of the surveys indicates the entire ebb delta has contracted radially while its crest has moved landward an average of 1 km. Compilation of historic records reveals that 130 x 106 m3 of sediment has been permanently removed from the San Francisco Bay and adjacent coastal ocean. Constriction of the bar is hypothesized to be from a decrease in sediment supply from San Francisco Bay, a reduction in the tidal prism of the estuary, and/or a reduction in the input of hydraulic mining debris. Changes to the morphology of the San Francisco Bar have likely altered wave refraction and focusing patterns on adjacent beaches and may be a factor in persistent beach erosion occurring in the area.

Trace metal associations in the water column of South San Francisco Bay, California

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Kuwabara, J.S.; Chang, Cecily C.Y.; Cloern, J.E.; Fries, T.L.; Davis, J.A.; Luoma, S.N.

1989-01-01

Spatial distributions of copper (Cu), zinc (Zn) and cadmium (Cd) were followed along a longitudinal gradient of dissolved organic carbon (DOC) in South San Francisco Bay (herein referred to as the South Bay). Dissolved Cu, Zn and Cd concentrations ranged from 24 to 66 nM, from 20 to 107 nM and from 1??2 to 4??7 nM, respectively, in samples collected on five dates beginning with the spring phytoplankton bloom and continuing through summer,1985. Dissolved Cu and Zn concentrations varied indirectly with salinity and directly with DOC concentration which ranged from 2??1 to 4??1 mg l-1. Available thermodynamic data strongly support the hypothesis that Cu speciation may be dominated by association with dissolved organic matter. Analogous control of Zn speciation by organic complexation was, however, not indicated in our computations. Computed free ion activity estimates for Cu, Zn and Cd were of the order of 10-10, 10-8 and 10-10 M, respectively. The availability of these metals may be among the factors regulating the growth of certain phytoplankton species within this region of the estuary. In contrast to dissolved Cu, dissolved Cd was directly related to the concentration of suspended particulate matter, suggesting a source of dissolved Cd coincident with elevated particle concentrations in the South Bay (e.g. runoff and solute desorption). Consistent with work in other estuaries, partitioning of all three trace metals onto suspended particulates was negatively correlated with salinity and positively correlated with increases in particulate organic carbon associated with the phytoplankton bloom. These results for the South Bay indicate that sorption processes influence dissolved concentrations of these trace metals, the degree of this influence varies among metals, and processes controlling metal distribution in this estuary appear to be more element-specific than spatially- or temporally-specific. ?? 1989.

Change in Urban Land Use and Associated Attributes in the Upper San Francisco Estuary, 1990-2006

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David M. Stoms

2010-09-01

Full Text Available Land use is an ultimate driver of many of the stressors on the Upper San Francisco Estuary, but the magnitude and pattern of land use change has not been analyzed. This paper attempts to fill this knowledge gap through a screening-level risk assessment. Urban land use was compared within hydrodynamic subregions in 1990, 2000, and 2006. Ancillary data were then used to quantify secondary measures such as impervious cover, housing density, road density and road crossings. Despite the rapid growth of the Bay Area, Sacramento, and Stockton metropolitan areas, the percentage of urban area and rates of change in the subregions are generally low to moderate when compared to other estuaries in the United States. The spatial data sets used in this analysis have been posted online to a public repository to be used by other researchers.

Distribution and Invasion Potential of Limonium ramosissimum subsp. provinciale in San Francisco Estuary Salt Marshes

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Gavin Archbald

2014-06-01

Full Text Available Non-native sea lavenders (Limonium spp. are invasive in salt marshes of southern California and were first documented in the San Francisco Estuary (the estuary in 2007. In this study, we mapped distributions of L. ramosissimum subsp. provinciale (LIRA and L. duriusculum within the estuary and investigated how the invasion potential of the more common species, LIRA, varies with elevation and edaphic conditions. We contacted colleagues and conducted field searches to find and then map sea lavender populations. In addition, we measured LIRA’s elevational range at three salt marshes. Across this range we measured (1 soil properties: salinity, moisture, bulk density, and texture; and (2 indicators of invasion potential: LIRA size, seed production, percent cover, spread (over 1 year, recruitment, and competition with native halophytes (over 6 months. We found LIRA in 15,144 m2 of upper salt marsh habitat in central and south San Francisco bays and L. duriusculum in 511 m2 in Richardson and San Pablo bays. LIRA was distributed from mean high water (MHW to 0.42 m above mean higher high water (MHHW. In both spring and summer, soil moisture and salinity were lowest at higher elevations within LIRA’s range, which corresponded with greater rosette size, inflorescence and seed production (up to 17,400 seeds per plant, percent cover, and recruitment. LIRA cover increased on average by 11% in 1 year across marshes and elevations. Cover of the native halophytes Salicornia pacifica, Jaumea carnosa, and Distichlis spicata declined significantly at all elevations if LIRA were present in plots (over a 6-month, fall–winter period. Results suggest LIRA’s invasion potential is highest above MHHW where salinity and moisture are lower, but that LIRA competes with native plants from MHW to above MHHW. We recommend removal efforts with emphasis on the salt marsh-terrestrial ecotone where LIRA seed output is highest.

Three-dimensional Modeling of Tidal Hydrodynamics in the San Francisco Estuary

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Edward S. Gross

2010-01-01

Full Text Available Simulations of circulation in the San Francisco Estuary were performed with the three-dimensional TRIM3D hydrodynamic model using a generic length scale turbulence closure. The model was calibrated to reproduce observed tidal elevations, tidal currents, and salinity observations in the San Francisco Estuary using data collected during 1996-1998, a period of high and variable freshwater flow. It was then validated for 1994-1995, with emphasis on spring of 1994, a period of intensive data collection in the northern estuary. The model predicts tidal elevations and tidal currents accurately, and realistically predicts salinity at both the seasonal and tidal time scales. The model represents salt intrusion into the estuary accurately, and therefore accurately represents the salt balance. The model’s accuracy is adequate for its intended purposes of predicting salinity, analyzing gravitational circulation, and driving a particle-tracking model. Two applications were used to demonstrate the utility of the model. We estimated the components of the longitudinal salt flux and examined their dependence on flow conditions, and compared predicted salt intrusion with estimates from two empirical models.

Downscaling future climate projections to the watershed scale: A north San Francisco Bay estuary case study

Science.gov (United States)

Micheli, Elisabeth; Flint, Lorraine; Flint, Alan; Weiss, Stuart; Kennedy, Morgan

2012-01-01

We modeled the hydrology of basins draining into the northern portion of the San Francisco Bay Estuary (North San Pablo Bay) using a regional water balance model (Basin Characterization Model; BCM) to estimate potential effects of climate change at the watershed scale. The BCM calculates water balance components, including runoff, recharge, evapotranspiration, soil moisture, and stream flow, based on climate, topography, soils and underlying geology, and the solar-driven energy balance. We downscaled historical and projected precipitation and air temperature values derived from weather stations and global General Circulation Models (GCMs) to a spatial scale of 270 m. We then used the BCM to estimate hydrologic response to climate change for four scenarios spanning this century (2000–2100). Historical climate patterns show that Marin’s coastal regions are typically on the order of 2 °C cooler and receive five percent more precipitation compared to the inland valleys of Sonoma and Napa because of marine influences and local topography. By the last 30 years of this century, North Bay scenarios project average minimum temperatures to increase by 1.0 °C to 3.1 °C and average maximum temperatures to increase by 2.1 °C to 3.4 °C (in comparison to conditions experienced over the last 30 years, 1981–2010). Precipitation projections for the 21st century vary between GCMs (ranging from 2 to 15% wetter than the 20th-century average). Temperature forcing increases the variability of modeled runoff, recharge, and stream discharge, and shifts hydrologic cycle timing. For both high- and low-rainfall scenarios, by the close of this century warming is projected to amplify late-season climatic water deficit (a measure of drought stress on soils) by 8% to 21%. Hydrologic variability within a single river basin demonstrated at the scale of subwatersheds may prove an important consideration for water managers in the face of climate change. Our results suggest that in arid

Humboldt Bay, California Benthic Habitats 2009 Geoform

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

Humboldt Bay, California Benthic Habitats 2009 Substrate

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

Humboldt Bay Benthic Habitats 2009 Aquatic Setting

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

Humboldt Bay, California Benthic Habitats 2009 Geodatabase

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

Comparative analysis of long-term chlorophyll data with generalized additive model - San Francisco Bay and St. Lucie Estuary

Science.gov (United States)

The health of estuarine ecosystems is often influenced by hydraulic and nutrient loading from upstream watersheds. We examined four decades of monitoring data of nutrient export into the Indian River Lagoon and San Francisco Bay, both of which have received considerable attentio...

An overview of San Francisco Bay PORTS

Science.gov (United States)

Cheng, Ralph T.; McKinnie, David; English, Chad; Smith, Richard E.

1998-01-01

The Physical Oceanographic Real-Time System (PORTS) provides observations of tides, tidal currents, and meteorological conditions in real-time. The San Francisco Bay PORTS (SFPORTS) is a decision support system to facilitate safe and efficient maritime commerce. In addition to real-time observations, SFPORTS includes a nowcast numerical model forming a San Francisco Bay marine nowcast system. SFPORTS data and nowcast numerical model results are made available to users through the World Wide Web (WWW). A brief overview of SFPORTS is presented, from the data flow originated at instrument sensors to final results delivered to end users on the WWW. A user-friendly interface for SFPORTS has been designed and implemented. Appropriate field data analysis, nowcast procedures, design and generation of graphics for WWW display of field data and nowcast results are presented and discussed. Furthermore, SFPORTS is designed to support hazardous materials spill prevention and response, and to serve as resources to scientists studying the health of San Francisco Bay ecosystem. The success (or failure) of the SFPORTS to serve the intended user community is determined by the effectiveness of the user interface.

Sediment transport patterns in the San Francisco Bay Coastal System from cross-validation of bedform asymmetry and modeled residual flux

Science.gov (United States)

Barnard, Patrick L.; Erikson, Li H.; Elias, Edwin P.L.; Dartnell, Peter; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

The morphology of ~ 45,000 bedforms from 13 multibeam bathymetry surveys was used as a proxy for identifying net bedload sediment transport directions and pathways throughout the San Francisco Bay estuary and adjacent outer coast. The spatially-averaged shape asymmetry of the bedforms reveals distinct pathways of ebb and flood transport. Additionally, the region-wide, ebb-oriented asymmetry of 5% suggests net seaward-directed transport within the estuarine-coastal system, with significant seaward asymmetry at the mouth of San Francisco Bay (11%), through the northern reaches of the Bay (7–8%), and among the largest bedforms (21% for λ > 50 m). This general indication for the net transport of sand to the open coast strongly suggests that anthropogenic removal of sediment from the estuary, particularly along clearly defined seaward transport pathways, will limit the supply of sand to chronically eroding, open-coast beaches. The bedform asymmetry measurements significantly agree (up to ~ 76%) with modeled annual residual transport directions derived from a hydrodynamically-calibrated numerical model, and the orientation of adjacent, flow-sculpted seafloor features such as mega-flute structures, providing a comprehensive validation of the technique. The methods described in this paper to determine well-defined, cross-validated sediment transport pathways can be applied to estuarine-coastal systems globally where bedforms are present. The results can inform and improve regional sediment management practices to more efficiently utilize often limited sediment resources and mitigate current and future sediment supply-related impacts.

Wastewater and Saltwater: Studying the Biogeochemistry and Microbial Activity Associated with Wastewater Inputs to San Francisco Bay

Science.gov (United States)

Challenor, T.; Menendez, A. D.; Damashek, J.; Francis, C. A.; Casciotti, K. L.

2014-12-01

Nitrification is the process of converting ammonium (NH­­4+) into nitrate (NO3-), and is a crucial step in removing nitrogen (N) from aquatic ecosystems. This process is governed by ammonia-oxidizing bacteria (AOB) and archaea (AOA) that utilize the ammonia monooxygenase gene (amoA). Studying the rates of nitrification and the abundances of ammonia-oxidizing microorganisms in south San Francisco Bay's Artesian Slough, which receives treated effluent from the massive San Jose-Santa Clara Regional Wastewater Facility, are important for understanding the cycling of nutrients in this small but complex estuary. Wastewater inputs can have negative environmental impacts, such as the release of nitrous oxide, a byproduct of nitrification and a powerful greenhouse gas. Nutrient inputs can also increase productivity and sometimes lead to oxygen depletion. Assessing the relative abundance and diversity of AOA and AOB, along with measuring nitrification rates gives vital information about the biology and biogeochemistry of this important N-cycling process. To calculate nitrification rates, water samples were spiked with 15N-labeled ammonium and incubated in triplicate for 24 hours. Four time-points were extracted across the incubation and the "denitrifier" method was used to measure the isotopic ratio of nitrate in the samples over time. In order to determine relative ratios of AOB to AOA, DNA was extracted from water samples and used in clade-specific amoA PCR assays. Nitrification rates were detectable in all locations sampled and were higher than in other regions of the bay, as were concentrations of nitrate and ammonium. Rates were highest in the regions of Artesian Slough most directly affected by wastewater effluent. AOB vastly outnumbered AOA, which is consistent with other studies showing that AOB prefer high nutrient environments. AOB diversity includes clades of Nitrosospira and Nitrosomonas prevalent in estuarine settings. Many of the sequenced genes are related

Avian communities in baylands and artificial salt evaporation ponds of the San Francisco Bay estuary

Science.gov (United States)

Takekawa, John Y.; Lu, C.T.; Pratt, R.T.

2001-01-01

San Francisco Bay wetlands, seasonal and tidal marshes between the historic low and high tide lines, are now highly fragmented because of development during the past 150 years. Artificial salt pond systems in the Bay are hypersaline and typically support simple assemblages of algae and invertebrates. In order to establish the value of salt ponds for migratory waterbirds, we used datasets to conduct a meta-analysis of avian communities in the baylands and salt ponds of San Pablo Bay. Fifty-three species of waterbirds in the salt ponds represented six foraging guilds: surface feeders, shallow probers, deep probers, dabblers, diving benthivores and piscivores. The total number of species and the Shannon-Weiner diversity index was higher in baylands than in salt ponds during all four seasons. However, overall bird density (number/ha) was higher in salt ponds compared with baylands in the winter and spring, primarily because of large concentrations of benthivores. Cessation of salt production in 1993 and subsequent reduction in water depth resulted in a decline of some diving duck populations that used the salt ponds.

Storm surges and climate change implications for tidal marshes: Insight from the San Francisco Bay Estuary, California, USA

Science.gov (United States)

Thorne, Karen M.; Buffington, Kevin J.; Swanson, Kathleen; Takekawa, John Y.

2013-01-01

Tidal marshes are dynamic ecosystems, which are influenced by oceanic and freshwater processes and daily changes in sea level. Projected sea-level rise and changes in storm frequency and intensity will affect tidal marshes by altering suspended sediment supply, plant communities, and the inundation duration and depth of the marsh platform. The objective of this research was to evaluate if regional weather conditions resulting in low-pressure storms changed tidal conditions locally within three tidal marshes. We hypothesized that regional storms will increase sea level heights locally, resulting in increased inundation of the tidal marsh platform and plant communities. Using site-level measurements of elevation, plant communities, and water levels, we present results from two storm events in 2010 and 2011 from the San Francisco Bay Estuary (SFBE), California, USA. The January 2010 storm had the lowest recorded sea level pressure in the last 30 years for this region. During the storm episodes, the duration of tidal marsh inundation was 1.8 and 3.1 times greater than average for that time of year, respectively. At peak storm surges, over 65% in 2010 and 93% in 2011 of the plant community was under water. We also discuss the implications of these types of storms and projected sea-level rise on the structure and function of the tidal marshes and how that will impact the hydro-geomorphic processes and marsh biotic communities.

San Francisco Bay Area Baseline Trash Loading Summary Results, San Francisco Bay Area CA, 2012, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — The San Francisco Bay Area stormwater permit sets trash control guidelines for discharges through the storm drain system. The permit covers Alameda, Contra Costa,...

Assessing toxicant effects in a complex estuary--A case study of effects of silver on reproduction in the bivalve, Potamocurbula amurensis, in San Francisco Bay

Science.gov (United States)

Brown, Cynthia L.; Parchaso, Francis; Thompson, Janet K.; Luoma, Samuel N.

2003-01-01

Contaminant exposures in natural systems can be highly variable. This variability is superimposed upon cyclic variability in biological processes. Together, these factors can confound determination of contaminant effects. Long term, multidisciplined studies with high frequency sampling can be effective in overcoming such obstacles. While studying trace metal contamination in the tissues of the clam, Potamocorbula amurensis, in the northern reach of San Francisco Bay, an episode of high Ag concentrations was identified (maximum of 5.5 µg g−1) at two mid-estuary sites. High concentrations were not seen in clams up-estuary (maximum of 1.92 µg g−1) from these sites and were reduced down-estuary (maximum of 2.67 µg g−1). Silver is not common naturally in the environment, so its elevated presence is usually indicative of anthropogenic influences such as municipal and industrial discharge. Monthly sampling of reproductive status of clams characterized the reproductive cycle and differences in the patterns of reproductive activity that corresponded to changes in Ag tissue concentrations. The proportion of reproductive clams was less than 60% during periods when tissue concentrations were high (generally >2 µg g−1). When tissue concentrations of Ag decreased (≤1 µg g−1), the proportion of reproductive clams was 80 to 100%. A comparison between the annual proportion of reproductive clams and annual Ag tissue concentrations showed a significant negative correlation. No other measured environmental variables were correlated with reproductive impairment. The weight-of-evidence approach strongly supports a cause and effect relationship between Ag contamination and reduced reproductive activity in P. amurensis.

Assessing toxicant effects in a complex estuary: A case study of effects of silver on reproduction in the bivalve, Potamocorbula amurensis, in San Francisco Bay

Science.gov (United States)

Brown, C.L.; Parchaso, F.; Thompson, J.K.; Luoma, S.N.

2003-01-01

Contaminant exposures in natural systems can be highly variable. This variability is superimposed upon cyclic variability in biological processes. Together, these factors can confound determination of contaminant effects. Long term, multidisciplined studies with high frequency sampling can be effective in overcoming such obstacles. While studying trace metal contamination in the tissues of the clam, Potamocorbula amurensis, in the northern reach of San Francisco Bay, an episode of high Ag concentrations was identified (maximum of 5.5 ??g g-1) at two mid-estuary sites. High concentrations were not seen in clams up-estuary (maximum of 1.92 ??g g-1) from these sites and were reduced down-estuary (maximum of 2.67 ??g g-1). Silver is not common naturally in the environment, so its elevated presence is usually indicative of anthropogenic influences such as municipal and industrial discharge. Monthly sampling of reproductive status of clams characterized the reproductive cycle and differences in the patterns of reproductive activity that corresponded to changes in Ag tissue concentrations. The proportion of reproductive clams was less than 60% during periods when tissue concentrations were high (generally >2 ??g g-1). When tissue concentrations of Ag decreased (???1 ??g g-1), the proportion of reproductive clams was 80 to 100%. A comparison between the annual proportion of reproductive clams and annual Ag tissue concentrations showed a significant negative correlation. No other measured environmental variables were correlated with reproductive impairment. The weight-of-evidence approach strongly supports a cause and effect relationship between Ag contamination and reduced reproductive activity in P. amurensis.

78 FR 57482 - Safety Zone; America's Cup Aerobatic Box, San Francisco Bay, San Francisco, CA

Science.gov (United States)

2013-09-19

...-AA00 Safety Zone; America's Cup Aerobatic Box, San Francisco Bay, San Francisco, CA AGENCY: Coast Guard... America's Cup air shows. These safety zones are established to provide a clear area on the water for... announced by America's Cup Race Management. ADDRESSES: Documents mentioned in this preamble are part of...

Surveillance for previously unmonitored organic contaminants in the San Francisco Estuary.

Science.gov (United States)

Oros, Daniel R; Jarman, Walter M; Lowe, Theresa; David, Nicole; Lowe, Sarah; Davis, Jay A

2003-09-01

The San Francisco Estuary Regional Monitoring Program initiated surveillance monitoring to identify previously unmonitored synthetic organic contaminants in the San Francisco Estuary. Organic extracts of water samples were analyzed using gas chromatography-mass spectrometry in full scan mode. The major contaminant classes identified in the samples were fire retardants, pesticides, personal care product ingredients, and plasticizers. Evidence from the literature suggests that some of these contaminants can persist in the environment, induce toxicity, and accumulate in marine biota and in higher food chain consumers. The major sources of these contaminants into the marine environment are the discharge of municipal and industrial wastewater effluents, urban stormwater, and agricultural runoff. As a proactive effort, it is suggested that surveillance studies be used routinely in monitoring programs to identify and prevent potential problem contaminants from harming the marine environment.

Analysis of Salinity Intrusion in the San Francisco Bay-Delta Using a GA-Optimized Neural Net, and Application of the Model to Prediction in the Elkhorn Slough Habitat

Science.gov (United States)

Thompson, D. E.; Rajkumar, T.

2002-12-01

The San Francisco Bay Delta is a large hydrodynamic complex that incorporates the Sacramento and San Joaquin Estuaries, the Suisan Marsh, and the San Francisco Bay proper. Competition exists for the use of this extensive water system both from the fisheries industry, the agricultural industry, and from the marine and estuarine animal species within the Delta. As tidal fluctuations occur, more saline water pushes upstream allowing fish to migrate beyond the Suisan Marsh for breeding and habitat occupation. However, the agriculture industry does not want extensive salinity intrusion to impact water quality for human and plant consumption. The balance is regulated by pumping stations located along the estuaries and reservoirs whereby flushing of fresh water keeps the saline intrusion at bay. The pumping schedule is driven by data collected at various locations within the Bay Delta and by numerical models that predict the salinity intrusion as part of a larger model of the system. The Interagency Ecological Program (IEP) for the San Francisco Bay / Sacramento-San Joaquin Estuary collects, monitors, and archives the data, and the Department of Water Resources provides a numerical model simulation (DSM2) from which predictions are made that drive the pumping schedule. A problem with DSM2 is that the numerical simulation takes roughly 16 hours to complete a prediction. We have created a neural net, optimized with a genetic algorithm, that takes as input the archived data from multiple gauging stations and predicts stage, salinity, and flow at the Carquinez Straits (at the downstream end of the Suisan Marsh). This model seems to be robust in its predictions and operates much faster than the current numerical DSM2 model. Because the Bay-Delta is strongly tidally driven, we used both Principal Component Analysis and Fast Fourier Transforms to discover dominant features within the IEP data. We then filtered out the dominant tidal forcing to discover non-primary tidal effects

75 FR 27432 - Security Zone; Golden Guardian 2010 Regional Exercise; San Francisco Bay, San Francisco, CA

Science.gov (United States)

2010-05-17

... can better evaluate its effects on them and participate in the rulemaking process. Small businesses... DEPARTMENT OF HOMELAND SECURITY Coast Guard 33 CFR Part 165 [Docket No. USCG-2010-0221] RIN 1625-AA87 Security Zone; Golden Guardian 2010 Regional Exercise; San Francisco Bay, San Francisco, CA AGENCY...

Chlorinated hydrocarbon pesticides and polychlorinated biphenyls in sediment cores from San Francisco Bay

Science.gov (United States)

Venkatesan, M.I.; De Leon, R. P.; VanGeen, A.; Luoma, S.N.

1999-01-01

Sediment cores of known chronology from Richardson and San Pablo Bays in San Francisco Bay, CA, were analyzed for a suite of chlorinated hydrocarbon pesticides and polychlorinated biphenyls to reconstruct a historic record of inputs. Total DDTs (DDT = 2,4'- and 4,4'-dichlorodiphenyltrichloroethane and the metabolites, 2,4'- and 4,4'-DDE, -DDD) range in concentration from 4-21 ng/g and constitute a major fraction (> 84%) of the total pesticides in the top 70 cm of Richardson Bay sediment. A subsurface maximum corresponds to a peak deposition date of 1969-1974. The first measurable DDT levels are found in sediment deposited in the late 1930's. The higher DDT inventory in the San Pablo relative to the Richardson Bay core probably reflects the greater proximity of San Pablo Bay to agricultural activities in the watershed of the Sacramento and San Joaquin rivers. Total polychlorinated biphenyls (PCBs) occur at comparable levels in the two Bays (inventories in San Pablo Bay are about a factor of four higher in the last four decades than in Richardson Bay, suggesting a distribution of inputs not as strongly weighed towards the upper reaches of the estuary as DDTs. The shallower subsurface maximum in PCBs compared to DDT in the San Pablo Bay core is consistent with the imposition of drastic source control measures four these constituents in 1970 and 1977 respectively. The observed decline in DDT and PCB levels towards the surface of both cores is consistent with a dramatic drop in the input of these pollutants once the effect of sediment resuspension and mixing is taken into account.

76 FR 70480 - Otay River Estuary Restoration Project, South San Diego Bay Unit of the San Diego Bay National...

Science.gov (United States)

2011-11-14

... River Estuary Restoration Project, South San Diego Bay Unit of the San Diego Bay National Wildlife...), intend to prepare an environmental impact statement (EIS) for the proposed Otay River Estuary Restoration... any one of the following methods. Email: [email protected] . Please include ``Otay Estuary NOI'' in the...

How many people use the Three Bays estuary system for recreation?

Science.gov (United States)

Little is known about recreational use on estuaries like Three Bays, MA. We are testing a practical approach to quantify recreational use of the Three Bays estuary system so we can better understand how many people are affected by changes in environmental quality. This involves c...

Microbial diversity in restored wetlands of San Francisco Bay

Energy Technology Data Exchange (ETDEWEB)

Theroux, Susanna [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; Hartman, Wyatt [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; He, Shaomei [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; Univ. of Wisconsin, Madison, WI (United States); Tringe, Susannah [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.

2013-12-09

Wetland ecosystems may serve as either a source or a sink for atmospheric carbon and greenhouse gases. This delicate carbon balance is influenced by the activity of belowground microbial communities that return carbon dioxide and methane to the atmosphere. Wetland restoration efforts in the San Francisco Bay-Delta region may help to reverse land subsidence and possibly increase carbon storage in soils. However, the effects of wetland restoration on microbial communities, which mediate soil metabolic activity and carbon cycling, are poorly studied. In an effort to better understand the underlying factors which shape the balance of carbon flux in wetland soils, we targeted the microbial communities in a suite of restored and historic wetlands in the San Francisco Bay-Delta region. Using DNA and RNA sequencing, coupled with greenhouse gas monitoring, we profiled the diversity and metabolic potential of the wetland soil microbial communities along biogeochemical and wetland age gradients. Our results show relationships among geochemical gradients, availability of electron acceptors, and microbial community composition. Our study provides the first genomic glimpse into microbial populations in natural and restored wetlands of the San Francisco Bay-Delta region and provides a valuable benchmark for future studies.

San Francisco Bay, California 1 arc-second DEM

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The 1-second San Francisco Bay, California Elevation Grid provides bathymetric data in ASCII raster format of 1-second resolution in geographic coordinates. This...

33 CFR 165.1182 - Safety/Security Zone: San Francisco Bay, San Pablo Bay, Carquinez Strait, and Suisun Bay, CA.

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Safety/Security Zone: San... Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) PORTS AND WATERWAYS SAFETY... Areas Eleventh Coast Guard District § 165.1182 Safety/Security Zone: San Francisco Bay, San Pablo Bay...

Avian response to early tidal salt marsh restoration at former commercial salt evaporation ponds in San Francisco Bay, California, USA

Science.gov (United States)

Athearn, Nicole D.; Takekawa, John Y.; Shinn, Joel

2009-01-01

Restoration of former commercial salt evaporation ponds in the San Francisco Bay estuary is intended to reverse a severe decline (>79%) in tidal salt marshes. San Francisco Bay is a critical migratory stopover site and wintering area for shorebirds and waterfowl, and salt ponds are important high tide roosting and foraging areas. Conservation of past bird abundance is a stated goal of area restoration projects, and early adaptive management will be critical for achieving this objective. However, initial avian response at sites restored to tidal flow may not be indicative of long-term results. For example, winter shorebirds at a 529 ha pond breached in 2002 showed a marked increase in shorebird abundance following breaching. Shorebirds comprised 1% of area totals during 1999-2002 and increased to 46% during 2003-2008. These changes accompanied increased tidal range and sedimentation, but minimal vegetation establishment. Conversely, a fully vegetated, restored 216 ha pond in the same system consistently supported less than 2% of all waterbirds in the region. Early restoration may temporarily increase habitat, but managed ponds will be needed for long-term waterbird abundance within a restored pond-marsh system.

Bioaccumulation of hydrocarbons derived from terrestrial and anthropogenic sources in the Asian clam, Potamocorbula amurensis, in San Francisco Bay estuary

Science.gov (United States)

Pereira, Wilfred E.; Hostettler, Frances D.; Rapp, John B.

1992-01-01

An assessment was made in Suisun Bay, California, of the distributions of hydrocarbons in estuarine bed and suspended sediments and in the recently introduced asian clam, Potamocorbula amurensis. Sediments and clams were contaminated with hydrocarbons derived from petrogenic and pyrogenic sources. Distributions of alkanes and of hopane and sterane biomarkers in sediments and clams were similar, indicating that petroleum hydrocarbons associated with sediments are bioavailable to Potamocorbula amurensis. Polycyclic aromatic hydrocarbons in the sediments and clams were derived mainly from combustion sources. Potamocorbula amurensis is therefore a useful bioindicator of hydrocarbon contamination, and may be used as a biomonitor of hydrocarbon pollution in San Francisco Bay.

Crustal structure of the coastal and marine San Francisco Bay region, California

Science.gov (United States)

Parsons, Tom

2002-01-01

As of the time of this writing, the San Francisco Bay region is home to about 6.8 million people, ranking fifth among population centers in the United States. Most of these people live on the coastal lands along San Francisco Bay, the Sacramento River delta, and the Pacific coast. The region straddles the tectonic boundary between the Pacific and North American Plates and is crossed by several strands of the San Andreas Fault system. These faults, which are stressed by about 4 cm of relative plate motion each year, pose an obvious seismic hazard.

Anthropogenic influence on recent bathymetric change in west-central San Francisco Bay

Science.gov (United States)

Barnard, Patrick L.; Kvitek, Rikk G.

2010-01-01

Two multibeam sonar surveys of west-central San Francisco Bay, California, were conducted in 1997 and 2008. Bathymetric change analysis between the two surveys indicates a loss of 14.1 million cubic meters (-3.1 cm/yr-1) of sediment during this time period, representing an approximately three-fold acceleration of the rate that was observed from prior depth change analysis from 1947 to 1979 for all of Central Bay, using more spatially coarse National Ocean Service (NOS) soundings. The portions of the overlapping survey areas between 1997 and 2008 designated as aggregate mining lease sites lost sediment at five times the rate of the remainder of west-central San Francisco Bay. Despite covering only 28% of the analysis area, volume change within leasing areas accounted for 9.2 million cubic meters of sediment loss, while the rest of the area lost 4.9 million cubic meters of sediment. The uncertainty of this recent analysis is more tightly constrained due to more stringent controls on vertical and horizontal position via tightly coupled, inertially aided differential Global Positioning Systems (GPS) solutions for survey vessel trajectory that virtually eliminate inaccuracies from traditional tide modeling and vessel motion artifacts. Further, quantification of systematic depth measurement error can now be calculated through comparison of static surfaces (e.g., bedrock) between surveys using seafloor habitat maps based on acoustic backscatter measurements and ground-truthing with grab samples and underwater video. Sediment loss in the entire San Francisco Bay Coastal System during the last half-century,as estimated from a series of bathymetric change studies, is 240 million cubic meters, and most of this is believed to be coarse sediment (i.e., sand and gravel) from Central Bay and the San Francisco Bar, which is likely to limit the sand supply to adjacent, open-coast beaches. This hypothesis is supported by a calibrated numerical model in a related study that indicates

Geophysical mapping of oyster habitats in a shallow estuary; Apalachicola Bay, Florida

Science.gov (United States)

Twichell, David C.; Andrews, Brian D.; Edmiston, H. Lee; Stevenson, William R.

2007-01-01

This report presents high-resolution geophysical data, interpretive maps, and a preliminary discussion about the oyster habitat and estuary-floor geology within Apalachicola Bay, Florida (fig. 1). During two research cruises, conducted in 2005 and 2006, approximately 230 km² of the bay floor were surveyed using interferometric-bathymetry, sidescan-sonar, and chirp seismic-reflection techniques. The research was conducted as part of a cooperative program between the U.S. Geological Survey (USGS), the National Oceanic and Atmospheric Administration Coastal Services Center (CSC), and the Apalachicola Bay National Estuarine Research Reserve. The Apalachicola Bay National Estuarine Research Reserve was established in 1979 to provide opportunities for long-term monitoring and research to provide a basis for more informed coastal management decisions for this estuary. Apalachicola Bay is the largest oyster fishery in Florida (Whitfield and Beaumariage, 1977), and the primary objective of this program is to develop a suite of maps that define oyster habitat distribution and estuary-floor geology within the bay. The resulting maps will assist in effective management of oyster resources and provide a reference geologic framework for future scientific and applied research.

Understanding processes controlling sediment transports at the mouth of a highly energetic inlet system (San Francisco Bay, CA)

Science.gov (United States)

Elias, Edwin P.L.; Hansen, Jeff E.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

San Francisco Bay is one of the largest estuaries along the U.S. West Coast and is linked to the Pacific Ocean through the Golden Gate, a 100 m deep bedrock inlet. A coupled wave, flow and sediment transport model is used to quantify the sediment linkages between San Francisco Bay, the Golden Gate, and the adjacent open coast. Flow and sediment transport processes are investigated using an ensemble average of 24 climatologically derived wave cases and a 24.8 h representative tidal cycle. The model simulations show that within the inlet, flow and sediment transport is tidally dominated and driven by asymmetry of the ebb and flood tides. Peak ebb velocities exceed the peak flood velocities in the narrow Golden Gate channel as a result of flow convergence and acceleration. Persistent flow and sediment gyres at the headland tips are formed that limit sediment transfer from the ebb-tidal delta to the inlet and into the bay. The residual transport pattern in the inlet is dominated by a lateral segregation with a large ebb-dominant sediment transport (and flow) prevailing along the deeper north side of the Golden Gate channel, and smaller flood dominant transports along the shallow southern margin. The seaward edge of the ebb-tidal delta largely corresponds to the seaward extent of strong tidal flows. On the ebb-tidal delta, both waves and tidal forcing govern flow and sediment transport. Wave focusing by the ebb-tidal delta leads to strong patterns of sediment convergence and divergence along the adjacent Ocean Beach.

Structure and flow-induced variability of the subtidal salinity field in northern San Francisco Bay

Science.gov (United States)

Monismith, Stephen G.; Kimmerer, W.; Burau, J.R.; Stacey, M.T.

2002-01-01

The structure of the salinity field in northern San Francisco Bay and how it is affected by freshwater flow are discussed. Two datasets are examined: the first is 23 years of daily salinity data taken by the U.S. Bureau of Reclamation along the axis of northern San Francisco Bay: the second is a set of salinity transects taken by the U.S. Geological Survey between 1988 and 1993. Central to this paper is a measure of salinity intrusion. X2: the distance from the Golden Gate Bridge to where the bottom salinity is 2 psu. Using X2 to scale distance, the authors find that for most flow conditions, the mean salinity distribution of the estuary is nearly self-similar with a salinity gradient in the center 70% of the region between the Golden Gate and X2 that is proportional to X2-1. Analysis of covariability of Q and X2 showed a characteristics timescale of adjustment of the salinity field of approximately 2 weeks. The steady-state response deduced from the X2 time series implies that X2 is proportional to riverflow to the 1/7 power. This relation, which differs from the standard 1/3 power dependence that is derived theoretically assuming constant exchange coefficients, shows that the upstream salt flux associated with gravitational circulation is more sensitive to the longitudinal salinity gradient than theory supposes. This is attributed to the strengthening of stratification caused by the stronger longitudinal salinity gradient that accompanies larger river flows.

San Francisco Bay Water Quality Improvement Fund Map Service, San Francisco CA, 2012, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — The San Francisco Bay Water Quality Improvement Fund is a competitive grant program that is helping implement TMDLs to improve water quality, protect wetlands, and...

San Francisco Bay Water Quality Improvement Fund Project Locations, San Francisco CA, 2017, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — The San Francisco Bay Water Quality Improvement Fund is a competitive grant program that is helping implement TMDLs to improve water quality, protect wetlands, and...

Open Water Processes of the San Francisco Estuary: From Physical Forcing to Biological Responses

Directory of Open Access Journals (Sweden)

Wim Kimmerer

2004-02-01

Full Text Available This paper reviews the current state of knowledge of the open waters of the San Francisco Estuary. This estuary is well known for the extent to which it has been altered through loss of wetlands, changes in hydrography, and the introduction of chemical and biological contaminants. It is also one of the most studied estuaries in the world, with much of the recent research effort aimed at supporting restoration efforts. In this review I emphasize the conceptual foundations for our current understanding of estuarine dynamics, particularly those aspects relevant to restoration. Several themes run throughout this paper. First is the critical role physical dynamics play in setting the stage for chemical and biological responses. Physical forcing by the tides and by variation in freshwater input combine to control the movement of the salinity field, and to establish stratification, mixing, and dilution patterns throughout the estuary. Many aspects of estuarine dynamics respond to interannual variation in freshwater flow; in particular, abundance of several estuarine-dependent species of fish and shrimp varies positively with flow, although the mechanisms behind these relationships are largely unknown. The second theme is the importance of time scales in determining the degree of interaction between dynamic processes. Physical effects tend to dominate when they operate at shorter time scales than biological processes; when the two time scales are similar, important interactions can arise between physical and biological variability. These interactions can be seen, for example, in the response of phytoplankton blooms, with characteristic time scales of days, to stratification events occurring during neap tides. The third theme is the key role of introduced species in all estuarine habitats; particularly noteworthy are introduced waterweeds and fishes in the tidal freshwater reaches of the estuary, and introduced clams there and in brackish water. The

National Status and Trends: Bioeffects Program - San Francisco Bay Database

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the San Francisco Bay...

226Ra and 228Ra in the mixing zones of the Pee Dee River-Winyah Bay, Yangtze River and Delaware Bay Estuaries

International Nuclear Information System (INIS)

Elsinger, R.J.; Moore, W.S.

1984-01-01

226 Ra and 228 Ra have non-conservative excess concentrations in the mixing zones of the Pee Dee River-Winyah Bay estuary, the Yangtze River estuary, and the Delaware Bay estuary. Laboratory experiments, using Pee Dee River sediment, indicate desorption of 226 Ra to increase with increasing salinities up to 20 per mille. In Winyah Bay desorption from river-borne sediments could contribute almost all of the increases for both isotopes. Desorption adds only a portion of the excess 228 Ra measured in the Yangtze River and adjacent Shelf waters and Delaware Bay. In the Yangtze River the mixing zone extends over a considerable portion of the Continental Shelf where 228 Ra is added to the water column by diffusion from bottom sediments, while 226 Ra concentrations decrease from dilution. Diffusion of 228 Ra from bottom sediments in Delaware Bay primarily occurs in the upper part of the bay ( 228 Ra of 0.33 dpm cm -2 year was determined for Delaware Bay. (author)

Earthquakes and faults in the San Francisco Bay area (1970-2003)

Science.gov (United States)

Sleeter, Benjamin M.; Calzia, James P.; Walter, Stephen R.; Wong, Florence L.; Saucedo, George J.

2004-01-01

The map depicts both active and inactive faults and earthquakes magnitude 1.5 to 7.0 in the greater San Francisco Bay area. Twenty-two earthquakes magnitude 5.0 and greater are indicated on the map and listed chronologically in an accompanying table. The data are compiled from records from 1970-2003. The bathymetry was generated from a digital version of NOAA maps and hydrogeographic data for San Francisco Bay. Elevation data are from the USGS National Elevation Database. Landsat satellite image is from seven Landsat 7 Enhanced Thematic Mapper Plus scenes. Fault data are reproduced with permission from the California Geological Survey. The earthquake data are from the Northern California Earthquake Catalog.

San Francisco Bay Water Quality Improvement Fund Points, SF Bay CA, 2015, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — The San Francisco Bay Water Quality Improvement Fund is a competitive grant program that is helping implement TMDLs to improve water quality, protect wetlands, and...

Ecosystem variability along the estuarine salinity gradient: Examples from long-term study of San Francisco Bay

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Cloern, James E.; Jassby, Alan D.; Schraga, Tara; Kress, Erica S.; Martin, Charles A.

2017-01-01

The salinity gradient of estuaries plays a unique and fundamental role in structuring spatial patterns of physical properties, biota, and biogeochemical processes. We use variability along the salinity gradient of San Francisco Bay to illustrate some lessons about the diversity of spatial structures in estuaries and their variability over time. Spatial patterns of dissolved constituents (e.g., silicate) can be linear or nonlinear, depending on the relative importance of river-ocean mixing and internal sinks (diatom uptake). Particles have different spatial patterns because they accumulate in estuarine turbidity maxima formed by the combination of sinking and estuarine circulation. Some constituents have weak or no mean spatial structure along the salinity gradient, reflecting spatially distributed sources along the estuary (nitrate) or atmospheric exchanges that buffer spatial variability of ecosystem metabolism (dissolved oxygen). The density difference between freshwater and seawater establishes stratification in estuaries stronger than the thermal stratification of lakes and oceans. Stratification is strongest around the center of the salinity gradient and when river discharge is high. Spatial distributions of motile organisms are shaped by species-specific adaptations to different salinity ranges (shrimp) and by behavioral responses to environmental variability (northern anchovy). Estuarine spatial patterns change over time scales of events (intrusions of upwelled ocean water), seasons (river inflow), years (annual weather anomalies), and between eras separated by ecosystem disturbances (a species introduction). Each of these lessons is a piece in the puzzle of how estuarine ecosystems are structured and how they differ from the river and ocean ecosystems they bridge.

Paleomagnetic investigation of late Quaternary sediments of south San Francisco Bay, California

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Hillhouse, John W.

1977-01-01

Paleomagnetic inclinations of the Late Quaternary sediments of South San Francisco Bay were determined from bore hole samples collected near Dumbarton Bridge. The sediments consist of estuarine muds and nonmarine sand deposits, floored by bedrock of the Mesozoic Franciscan Formation. - Beneath Dumbarton Bridge the entire sedimentary fill is normally polarized; therefore, the fill postdates the Brunhes-Matayama polarity reversal (700,000 y. B.P.). Magnetic time lines such as the Mono Lake excursion (24,000 y. B.P.) and the reversed Blake event (110,000 y B.P.) were not found in this bore hole. In addition to Holocene and modern deposits of San Francisco Bay, an older estuarine unit occurs in the stratigraphic section. The older unit was deposited during a period of high sea level, tentatively correlated with the Sangamon interglacial period. Because evidence of the Blake event is not present in the older estuarine unit, the proposed age of this unit could not be confirmed. Although the Holocene estuarine deposits of South San Francisco Bay carry stable remanent magnetization, a reliable record of geomagnetic secular variation could not be recovered because the water-saturated sdiment was deformed by drilling.

1993 Annual Report: San Francisco estuary regional monitoring program for trace substances

Science.gov (United States)

Thompson, B.; Lacy, Jessica; Hardin, Dane; Grovhaug, Tom; Taberski, K.; Jassby, Alan D.; Cloern, James E.; Caffrey, J.; Cole, B.; Schoellhamer, David H.

1993-01-01

This first annual report of the San Francisco Estuary Regional Monitoring Program contains the results of monitoring measurements made in 1993. Measurements of conventional water quality parameters and trace contaminant concentrations were made at 16 stations throughout the Estuary three times during the year: the wet period (March), during declining Delta outflow (May), and during the dry period (September). Water toxicity tests were conducted at 8 of those stations. Measurements of sediment quality and contaminant concentrations were made at the same 16 stations during the wet and dry sampling periods. Sediment toxicity was measured at 8 of those stations. Transplanted, bagged bivalve bioaccumulation and condition was measured at 11 stations during the wet and dry sampling periods.

Padilla Bay: The Estuary Guide. Level 2.

Science.gov (United States)

Friesem, Judy; Lynn, Valerie, Ed.

Estuaries are marine systems that serve as nurseries for animals, links in the migratory pathways, and habitat for a complex community of organisms. This curriculum guide intended for use at the middle school level is designed for use with the on-site program developed by the Padilla Bay National Esturine Research Reserve (Washington). The guide…

Estuary-ocean connectivity: fast physics, slow biology.

Science.gov (United States)

Raimonet, Mélanie; Cloern, James E

2017-06-01

Estuaries are connected to both land and ocean so their physical, chemical, and biological dynamics are influenced by climate patterns over watersheds and ocean basins. We explored climate-driven oceanic variability as a source of estuarine variability by comparing monthly time series of temperature and chlorophyll-a inside San Francisco Bay with those in adjacent shelf waters of the California Current System (CCS) that are strongly responsive to wind-driven upwelling. Monthly temperature fluctuations inside and outside the Bay were synchronous, but their correlations weakened with distance from the ocean. These results illustrate how variability of coastal water temperature (and associated properties such as nitrate and oxygen) propagates into estuaries through fast water exchanges that dissipate along the estuary. Unexpectedly, there was no correlation between monthly chlorophyll-a variability inside and outside the Bay. However, at the annual scale Bay chlorophyll-a was significantly correlated with the Spring Transition Index (STI) that sets biological production supporting fish recruitment in the CCS. Wind forcing of the CCS shifted in the late 1990s when the STI advanced 40 days. This shift was followed, with lags of 1-3 years, by 3- to 19-fold increased abundances of five ocean-produced demersal fish and crustaceans and 2.5-fold increase of summer chlorophyll-a in the Bay. These changes reflect a slow biological process of estuary-ocean connectivity operating through the immigration of fish and crustaceans that prey on bivalves, reduce their grazing pressure, and allow phytoplankton biomass to build. We identified clear signals of climate-mediated oceanic variability in this estuary and discovered that the response patterns vary with the process of connectivity and the timescale of ocean variability. This result has important implications for managing nutrient inputs to estuaries connected to upwelling systems, and for assessing their responses to changing

Water quality in South San Francisco Bay, California: current condition and potential issues for the South Bay Salt Pond Restoration Project.

Science.gov (United States)

Grenier, J Letitia; Davis, Jay A

2010-01-01

The SBSPRP is an extensive tidal wetland restoration project that is underway at the margin of South San Francisco Bay, California. The Project, which aims to restore former salt ponds to tidal marsh and manage other ponds for water bird support, is taking place in the context of a highly urbanized watershed and an Estuary already impacted by chemical contaminants. There is an intimate relationship between water quality in the watershed, the Bay, and the transitional wetland areas where the Project is located. The Project seeks to restore habitat for endangered and endemic species and to provide recreational opportunities for people. Therefore, water quality and bioaccumulation of contaminants in fish and wildlife is an important concern for the success of the Project. Mercury, PCBs, and PBDEs are the persistent contaminants of greatest concern in the region. All of these contaminants are present at elevated concentrations both in the abiotic environment and in wildlife. Dioxins, pyrethroids, PAHs, and selenium are also problematic. Organochlorine insecticides have historically impacted the Bay, and they remain above thresholds for concern in a small proportion of samples. Emerging contaminants, such as PFCs and non-PBDE flame retardants, are also an important water quality issue. Beyond chemical pollutants, other concerns for water quality in South San Francisco Bay exist, and include biological constituents, especially invasive species, and chemical attributes, such as dissolved oxygen and salinity. Future changes, both from within the Project and from the Bay and watershed, are likely to influence water quality in the region. Project actions to restore wetlands could worsen, improve, or not affect the already impaired water quality in South Bay. Accelerated erosion of buried sediment as a consequence of Project restoration actions is a potentially serious regional threat to South Bay water and sediment quality. Furthermore, the planned restoration of salt ponds

Connecting Past to Present and Watersheds to Ocean: Modeling 165 Years of Incremental Changes to Flows into the San Francisco Bay Delta System

Science.gov (United States)

MacVean, L. J.; Thompson, S. E.; Huttom, P. H.; Sivapalan, M.

2016-02-01

California's Sacramento-San Joaquin Delta sits at the intersection of vast agricultural and population centers, and supplies fresh water for the diverse and often competing needs of ecosystems, farmers, and millions of Californians. Managing and allocating this resource is a complex feat of economics, politics, and engineering, made increasingly contentious by the ongoing drought. The objective of this research is to augment the scientific foundation of management decisions by addressing the question of how flows into the Delta have evolved in response to human intervention since 1850. In particular, quantifying the dynamic components of water usage through vegetative uptake and evapotranspiration, groundwater recharge, flood conveyance, and water exports at incremental levels of development is a key ambition. This approach emphasizes the built environment, which is subject to the local regulatory framework, rather than climate change, which is generally considered immovable without united global effort. This work encompasses the creation of a hydrologic model representing the watersheds of the San Francisco Bay-Delta system, and quantifies the impacts of changes in land use and the gradual construction of levees, reservoirs, and diversion infrastructure. The model is run using the same climatological forcing at each level of development, thus elucidating the effects of local anthropogenic activity on the Delta and the inflows to the San Francisco Bay estuary. Our results provide a timeline of change, giving decision-makers a scientifically established baseline to aid in the sustainable management of the Bay-Delta system.

Recent research on the hydrodynamics of the Sacramento - San Joaquin River Delta and north San Francisco Bay

Science.gov (United States)

Burau, J.R.; Monismith, S.G.; Stacey, M.T.; Oltmann, R.N.; Lacy, J.R.; Schoellhamer, D.H.

1999-01-01

This article presents an overview of recent findings from hydrodynamic research on circulation and mixing in the Sacramento-San Joaquin Delta (Delta) (Figure 1) and North San Francisco Bay (North Bay) (Figure 2). For the purposes of this article, North Bay includes San Pablo Bay, Carquinez Strait, and Suisun Bay. The findings presented are those gained from field studies carried out by the U.S. Geological Survey (USGS), as part of the Interagency Ecological Program (IEP), and Stanford University beginning about 1993. The premise behind these studies was that a basic understanding of circulation and mixing patterns in the Bay and Delta is an essential part of understanding how biota and water quality are affected by natural hydrologic variability, water appropriation, and development activities. Data collected for the field studies described in this article have significantly improved our understanding of Bay and Delta hydrodynamics. Measured flows ,in the Delta have provided valuable information on how water moves through the Delta's network of channels and how export pumping affects flows. Studies of the shallows and shallow-channel exchange processes conducted in Honker Bay have shown that the water residence time in Honker Bay is much shorter than previously reported (on the order of hours to several tidal cycles instead ofweeks). Suisun Bay studies have provided data on hydrodynamic transport and accumulation mechanisms that operate primarily in the channels. The Suisun Bay studies have caused us to revise our understanding of residual circulation in the channels of North Bay and of "entrapment" mechanisms in the low salinity zone. Finally, detailed tidal and residual (tidally averaged) time-scale studies of the mechanisms that control gravitational circulation in the estuary show that density-driven transport in the channels is governed by turbulence time-scale (seconds) interactions between the mean flow and stratification. The hydrodynamic research

Agricultural Chemical Concentrations and Loads in Rivers Draining the Central Valley, California, to the San Francisco Bay-Delta Estuary: Before and During an Extended Drought

Science.gov (United States)

Domagalski, J. L.

2016-12-01

Drought or near drought conditions have occurred in California since 2012. Although some parts of the State received near normal precipitation in water year 2016, other locations were still below average. Extended drought can impact aquatic organisms in a variety of ways because of decreased flows and elevated water temperature. However, lower precipitation and availability of irrigation water may limit subsequent runoff, resulting in reduced concentrations and loads of certain environmental toxicants, such as pesticides and ammonia, thereby limiting their toxic effects. In this study, funded by the U.S. Geological Survey National Water Quality Program, the occurrence of 227 pesticides and degradation products, and nutrients was assessed before and during this current drought in the two largest rivers draining to the San Francisco Bay: the Sacramento and San Joaquin Rivers. The watersheds of both rivers include substantial agricultural and urban land use. Herbicides, insecticides, fungicides, and ammonia were detected throughout the study (2010 to 2016) and models of daily concentration using the seasonal wave model (rloadest) were formulated to assess the amount of time that concentrations may have exceeded benchmark levels known to be toxic to aquatic organisms. Frequently detected pesticides included the fungicide azoxystrobin, herbicides or their degradation products such as diuron, glyphosate, and metolachlor, and insecticides such as imidacloprid. Compounds that are transported primarily by surface runoff generally showed decreasing concentrations as the drought progressed, especially in the San Joaquin River. Compounds mainly transported by groundwater, as indicated by seasonal concentration profiles, had more stable concentrations in the rivers. Mass loads to the Bay all decreased, as expected, because of the lower river discharge. When compared to aquatic-life benchmarks, modeled concentrations indicated that individual compounds were not contributing to

When it happens again: impact of future San Francisco Bay area earthquakes

Science.gov (United States)

Zoback, M.; Boatwright, J.; Kornfield, L.; Scawthorn, C.; Rojahn, C.

2005-12-01

San Francisco Bay area earthquakes, like major floods and hurricanes, have the potential for massive damage to dense urban population centers concentrated in vulnerable zones-along active faults, in coastal regions, and along major river arteries. The recent destruction of Hurricane Katrina does have precedent in the destruction following the 1906 "San Francisco" earthquake and fire in which more than 3000 people were killed and 225,000 were left homeless in San Francisco alone, a city of 400,000 at the time. Analysis of a comprehensive set of damage reports from the magnitude (M) 7.9 1906 earthquake indicates a region of ~ 18,000 km2 was subjected to shaking of Modified Mercalli Intensity of VIII or more - motions capable of damaging even modern, well-built structures; more than 60,000 km2 was subjected to shaking of Intensity VII or greater - the threshold for damage to masonry and poorly designed structures. By comparison, Katrina's hurricane force winds and intense rainfall impacted an area of ~100,000 km2 on the Gulf Coast. Thus, the anticipated effects of a future major Bay Area quake to lives, property, and infrastructure are comparable in scale to Katrina. Secondary hazards (levee failure and flooding in the case of Katrina and fire following the 1906 earthquake) greatly compounded the devastation in both disasters. A recent USGS-led study concluded there is a 62% chance of one or more damaging (M6.7 or greater) earthquakes striking the greater San Francisco Bay area over the next 30 years. The USGS prepared HAZUS loss estimates for the 10 most likely forecast earthquakes which range in size from a M6.7 event on a blind thrust to the largest anticipated event, a M7.9 repeat of the 1906 earthquake. The largest economic loss is expected for a repeat of the 1906 quake. Losses in the Bay region for this event are nearly double those predicted for a M6.9 rupture of the entire Hayward Fault in the East Bay. However, because of high density of population along the

Solar for Your Present Home. San Francisco Bay Area Edition.

Science.gov (United States)

Barnaby, Charles S.; And Others

This publication provides information about present uses of solar energy for space, water, and swimming pool heating that are practical for the San Francisco Bay area. It attempts to provide interested persons with the information needed to make decisions regarding installations of solar heating systems. The point of view taken is that any…

The critical role of islands for waterbird breeding and foraging habitat in managed ponds of the South Bay Salt Pond Restoration Project, South San Francisco Bay, California

Science.gov (United States)

Ackerman, Joshua T.; Hartman, C. Alex; Herzog, Mark P.; Smith, Lacy M.; Moskal, Stacy M.; De La Cruz, Susan E. W.; Yee, Julie L.; Takekawa, John Y.

2014-01-01

The South Bay Salt Pond Restoration Project aims to restore 50–90 percent of former salt evaporation ponds into tidal marsh in South San Francisco Bay, California. However, large numbers of waterbirds use these ponds annually as nesting and foraging habitat. Islands within ponds are particularly important habitat for nesting, foraging, and roosting waterbirds. To maintain current waterbird populations, the South Bay Salt Pond Restoration Project plans to create new islands within former salt ponds in South San Francisco Bay. In a series of studies, we investigated pond and individual island attributes that are most beneficial to nesting, foraging, and roosting waterbirds.

2010 Northern San Francisco Bay Area Lidar: Portions of Alameda, Contra Costa, Marin, Napa, San Francisco, Solano, and Sonoma Counties

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This Light Detection and Ranging (LiDAR) dataset is a survey of northern San Francisco Bay, California. The project area consists of approximately 437 square miles...

Sea change under climate change: case studies in rare plant conservation from the dynamic San Francisco Estuary

Science.gov (United States)

We present case studies supporting management of two rare plant species in tidal wetlands of the San Francisco Estuary. For an annual hemiparasite, we used demographic analyses to identify factors to enhance population establishment, survivorship and fitness, and to compare reintroduced with natura...

Understanding Urban Watersheds through Digital Interactive Maps, San Francisco Bay Area, California

Science.gov (United States)

Sowers, J. M.; Ticci, M. G.; Mulvey, P.

2014-12-01

Dense urbanization has resulted in the "disappearance" of many local creeks in urbanized areas surrounding the San Francisco Bay. Long reaches of creeks now flow in underground pipes. Municipalities and water agencies trying to reduce non-point-source pollution are faced with a public that cannot see and therefore does not understand the interconnected nature of the drainage system or its ultimate discharge to the bay. Since 1993, we have collaborated with the Oakland Museum, the San Francisco Estuary Institute, public agencies, and municipalities to create creek and watershed maps to address the need for public understanding of watershed concepts. Fifteen paper maps are now published (www.museumca.org/creeks), which have become a standard reference for educators and anyone working on local creek-related issues. We now present digital interactive creek and watershed maps in Google Earth. Four maps are completed covering urbanized areas of Santa Clara and Alameda Counties. The maps provide a 3D visualization of the watersheds, with cartography draped over the landscape in transparent colors. Each mapped area includes both Present and Past (circa 1800s) layers which can be clicked on or off by the user. The Present layers include the modern drainage network, watershed boundaries, and reservoirs. The Past layers include the 1800s-era creek systems, tidal marshes, lagoons, and other habitats. All data are developed in ArcGIS software and converted to Google Earth format. To ensure the maps are interesting and engaging, clickable icons pop-up provide information on places to visit, restoration projects, history, plants, and animals. Maps of Santa Clara Valley are available at http://www.valleywater.org/WOW.aspx. Maps of western Alameda County will soon be available at http://acfloodcontrol.org/. Digital interactive maps provide several advantages over paper maps. They are seamless within each map area, and the user can zoom in or out, and tilt, and fly over to explore

Water quality dynamics in an urbanizing subtropical estuary(Oso Bay, Texas).

Science.gov (United States)

Wetz, Michael S; Hayes, Kenneth C; Fisher, Kelsey V B; Price, Lynn; Sterba-Boatwright, Blair

2016-03-15

Results are presented from a study of water quality dynamics in a shallow subtropical estuary, Oso Bay, Texas, which has a watershed that has undergone extensive urbanization in recent decades. High inorganic nutrient, dissolved organic matter and chlorophyll concentrations, as well as low pH (Oso Bay that receives wastewater effluent. Despite being shallow (Oso Bay, suggesting that it may be exported to adjacent Corpus Christi Bay and contribute to seasonal hypoxia development in that system as well. These results argue for wastewater nutrient input reductions in order to alleviate the symptoms of eutrophication. Copyright © 2016 Elsevier Ltd. All rights reserved.

Evaluation of social attraction measures to establish Forster’s tern (Sterna forsteri) nesting colonies for the South Bay Salt Pond Restoration Project, San Francisco Bay, California—2017 Annual Report

Science.gov (United States)

Hartman, C. Alex; Ackerman, Joshua T.; Herzog, Mark P.; Wang, Yiwei; Strong, Cheryl

2018-05-31

multiple outreach activities, including the development of a project web site (https://apps.usgs.gov/shorebirds/) and educational video (https://www.youtube.com/watch?v=-IaZD0YlAvM&feature=youtu.be); publication of a popular article (http://www.sfestuary.org/estuary-news-caspian-push-and-pull/); and public presentations to relay findings to managers, stakeholders, and the general public.The relative number of Forster’s terns using Pond A16, after adjusting for the overall South San Francisco Bay breeding population each year, was higher during the nesting period in 2017 (after social attraction was used) than in 2015 and 2016 (before social attraction was used). Furthermore, in 2017, more Forster’s terns were observed in the areas of Pond A16 where decoys and call systems were deployed during the pre-nesting and nesting periods. Although no Forster’s tern nests were recorded in Pond A16 before (2015, 2016) or after (2017) implementation of social attraction measures, bird survey results indicate that Forster’s terns were attracted to areas within Pond A16 where decoys and call systems were deployed, suggesting that terns may have been prospecting for future breeding sites. As social attraction efforts often benefit from multiple years of decoy and call system deployment, these first-year results suggest that continued implementation of social attraction measures could help to re-establish Forster’s tern breeding colonies in Pond A16 and other areas of South San Francisco Bay.

San Francisco folio, California, Tamalpais, San Francisco, Concord, San Mateo, and Haywards quadrangles

Science.gov (United States)

Lawson, Andrew Cowper

1914-01-01

The five sheets of the San Francisco folio the Tamalpais, Ban Francisco, Concord, Ban Mateo, and Haywards sheets map a territory lying between latitude 37° 30' and 38° and longitude 122° and 122° 45'. Large parts of four of these sheets cover the waters of the Bay of San Francisco or of the adjacent Pacific Ocean. (See fig. 1.) Within the area mapped are the cities of San Francisco, Oakland, Berkeley, Alameda, Ban Rafael, and San Mateo, and many smaller towns and villages. These cities, which have a population aggregating about 750,000, together form the largest and most important center of commercial and industrial activity on the west coast of the United States. The natural advantages afforded by a great harbor, where the railways from the east meet the ships from all ports of the world, have determined the site of a flourishing cosmopolitan, commercial city on the shores of San Francisco Bay. The bay is encircled by hilly and mountainous country diversified by fertile valley lands and divides the territory mapped into two rather contrasted parts, the western part being again divided by the Golden Gate. It will therefore be convenient to sketch the geographic features under four headings (1) the area east of San Francisco Bay; (2) the San Francisco Peninsula; (3) the Marin Peninsula; (4) San Francisco Bay. (See fig. 2.)

Integrating terrestrial LiDAR and stereo photogrammetry to map the Tolay lakebed in northern San Francisco Bay

Science.gov (United States)

Woo, Isa; Storesund,; Takekawa, John Y.; Gardiner, Rachel J.; Ehret,

2009-01-01

The Tolay Creek Watershed drains approximately 3,520 ha along the northern edge of San Francisco Bay. Surrounded by a mosaic of open space conservation easements and public wildlife areas, it is one of the only watersheds in this urbanized estuary that is protected from its headwaters to the bay. Tolay Lake is a seasonal, spring-fed lake found in the upper watershed that historically extended over 120 ha. Although the lakebed was farmed since the early 1860s, the majority of the lakebed was recently acquired by the Sonoma County Regional Parks Department to restore its natural habitat values. As part of the restoration planning process, we produced a digital elevation model (DEM) of the historic extent of Tolay Lake by integrating terrestrial LiDAR (light detection and ranging) and stereo photogrammetry datasets, and real-time kinematic (RTK) global positioning system (GPS) surveys. We integrated the data, generated a DEM of the lakebed and upland areas, and analyzed errors. The accuracy of the composite DEM was verified using spot elevations obtained from the RTK GPS. Thus, we found that by combining photogrammetry, terrestrial LiDAR, and RTK GPS, we created an accurate baseline elevation map to use in watershed restoration planning and design.

Temporal fluctuations in grain size, organic materials and iron concentrations in intertidal surface sediment of San Francisco Bay

Science.gov (United States)

Thomson-Becker, E. A.; Luoma, S.N.

1985-01-01

The physical and chemical characteristics of the oxidized surface sediment in an estuary fluctuate temporally in response to physical forces and apparently-fluctuating inputs. These characteristics, which include grain size and concentrations of organic materials and iron, will influence both trace-metal geochemistry and bioavailability. Temporal trends in the abundance of fine particles, total organic carbon content (TOC), absorbance of extractable organic material (EOM), and concentration of extractable iron in the sediment of San Francisco Bay were assessed using data sets containing approximately monthly samples for periods of two to seven years. Changes in wind velocity and runoff result in monthly changes in the abundance of fine particles in the intertidal zone. Fine-grained particles are most abundant in the late fall/early winter when runoff is elevated and wind velocities are low; particles are coarser in the summer when runoff is low and wind velocities are consistently high. Throughout the bay, TOC is linearly related to fine particle abundance (r = 0.61). Temporal variability occurs in this relationship, as particles are poor in TOC relative to percent of fine particles in the early rainy season. Iron-poor particles also appear to enter the estuary during high runoff periods; while iron is enriched on particle surfaces in the summer. Concentrations of extractable iron and absorbance of EOM vary strongly from year to year. Highest absorbances of EOM occurred in the first year following the drought in 1976-77, and in 1982 and 1983 when river discharge was unusually high. Extractable-iron concentrations were also highest in 1976-77, but were very low in 1982 and 1983. ?? 1985 Dr W. Junk Publishers.

ASTER Images San Francisco Bay Area

Science.gov (United States)

2000-01-01

These images of the San Francisco Bay region were acquired on March 3, 2000 by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on NASA's Terra satellite. Each covers an area 60 kilometers (37 miles) wide and 75 kilometers (47 miles) long. With its 14 spectral bands from the visible to the thermal infrared wavelength region, and its high spatial resolution of 15 to 90 meters (about 50 to 300 feet), ASTER will image the Earth for the next 6 years to map and monitor the changing surface of our planet.Upper Left: The color infrared composite uses bands in the visible and reflected infrared. Vegetation is red, urban areas are gray; sediment in the bays shows up as lighter shades of blue. Thanks to the 15 meter (50-foot) spatial resolution, shadows of the towers along the Bay Bridge can be seen.Upper right: A composite of bands in the short wave infrared displays differences in soils and rocks in the mountainous areas. Even though these regions appear entirely vegetated in the visible, enough surface shows through openings in the vegetation to allow the ground to be imaged.Lower left: This composite of multispectral thermal bands shows differences in urban materials in varying colors. Separation of materials is due to differences in thermal emission properties, analogous to colors in the visible.Lower right: This is a color coded temperature image of water temperature, derived from the thermal bands. Warm waters are in white and yellow, colder waters are blue. Suisun Bay in the upper right is fed directly from the cold Sacramento River. As the water flows through San Pablo and San Francisco Bays on the way to the Pacific, the waters warm up.Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is one of five Earth-observing instruments launched December 18, 1999, on NASA's Terra satellite. The instrument was built by Japan's Ministry of International Trade and Industry. A joint U.S./Japan science team is responsible for

Improved Storm Monitoring and Prediction for the San Francisco Bay Area

Science.gov (United States)

Cifelli, R.; Chandrasekar, V.; Anderson, M.; Davis, G.

2017-12-01

The Advanced Quantitative Precipitation Information (AQPI) System is a multi-faceted project to improve precipitation and hydrologic monitoring, prediction, and decision support for the San Francisco Bay Area. The Bay Area faces a multitude of threats from extreme events, including disrupted transportation from flooded roads and railroad lines, water management challenges related to storm water, river and reservoir management and storm-related damage demanding emergency response. The threats occur on spatial scales ranging from local communities to the entire region and time scales ranging from hours to days. These challenges will be exacerbated by future sea level rise, more extreme weather events and increased vulnerabilities. AQPI is a collaboration of federal, state and local governments with assistance from the research community. Led by NOAA's Earth System Research Laboratory, in partnership with the Cooperative Institute for Research in the Atmosphere, USGS, and Scripps, AQPI is a four-year effort funded in part by a grant from the California Department of Water Resource's Integrated Regional Water Management Program. The Sonoma County Water Agency is serving as the local sponsor of the project. Other local participants include the Santa Clara Valley Water District, San Francisco Public Utilities Commission, and the Bay Area Flood Protection Agencies Association. AQPI will provide both improved observing capabilities and a suite of numerical forecast models to produce accurate and timely information for benefit of flood management, emergency response, water quality, ecosystem services, water supply and transportation management for the Bay Area. The resulting information will support decision making to mitigate flood risks, secure water supplies, minimize water quality impacts to the Bay from combined sewer overflows, and have improved lead-time on coastal and Bay inundation from extreme storms like Atmospheric Rivers (ARs). The project is expected to

Regional and Large-Scale Climate Influences on Tree-Ring Reconstructed Null Zone Position in San Francisco Bay

Science.gov (United States)

Stahle, D.; Griffin, D.; Cleaveland, M.; Fye, F.; Meko, D.; Cayan, D.; Dettinger, M.; Redmond, K.

2007-05-01

A new network of 36 moisture sensitive tree-ring chronologies has been developed in and near the drainage basins of the Sacramento and San Joaquin Rivers. The network is based entirely on blue oak (Quercus douglasii), which is a California endemic found from the lower forest border up into the mixed conifer zone in the Coast Ranges, Sierra Nevada, and Cascades. These blue oak tree-ring chronologies are highly correlated with winter-spring precipitation totals, Sacramento and San Joaquin streamflow, and with seasonal variations in salinity and null zone position in San Francisco Bay. Null zone is the non-tidal bottom water location where density-driven salinity and river-driven freshwater currents balance (zero flow). It is the area of highest turbidity, water residence time, sediment accumulation, and net primary productivity in the estuary. Null zone position is measured by the distance from the Golden Gate of the 2 per mil bottom water isohaline and is primarily controlled by discharge from the Sacramento and San Joaquin Rivers (and ultimately by winter-spring precipitation). The location of the null zone is an estuarine habitat indicator, a policy variable used for ecosystem management, and can have a major impact on biological resources in the San Francisco estuary. Precipitation-sensitive blue oak chronologies can be used to estimate null zone position based on the strong biogeophysical interaction among terrestrial, aquatic, and estuarine ecosystems, orchestrated by precipitation. The null zone reconstruction is 626-years long and provides a unique long term perspective on the interannual to decadal variability of this important estuarine habitat indicator. Consecutive two-year droughts (or longer) allow the null zone to shrink into the confined upper reaches of Suisun Bay, causing a dramatic reduction in phytoplankton production and favoring colonization of the estuary by marine biota. The reconstruction indicates an approximate 10 year recurrence interval

San Francisco Bay Area Rapid Transit District (BART) climate change adaptation assessment pilot.

Science.gov (United States)

2013-12-01

The objective of this pilot study was to evaluate the impacts of climate change on the San Francisco Bay Area Rapid Transit District : (BART) infrastructure and to develop and implement adaptation strategies against those impacts. Climate change haza...

226Ra behavior in the Pee Dee river-Winyah Bay estuary

International Nuclear Information System (INIS)

Elsinger, R.J.; Moore, W.S.

1980-01-01

Concentrations of dissolved 226 Ra in Winyah Bay, South Carolina, and in the adjacent Atlantic Ocean are augmented by the desorption of radium from sediments in the low-salinity area of the estuary and diffusion from bottom sediments. Desorption of 226 Ra is reflected by lower concentrations in suspended sediments from higher-salinity regions of the estuary. Bottom sediments from the high-salinity region have lower 226 Ra/ 230 Th activity ratios than those from the low-salinity end. (orig./ME)

Synthesis of studies in the fall low-salinity zone of the San Francisco Estuary, September-December 2011

Science.gov (United States)

Brown, Larry R.; Baxter, Randall; Castillo, Gonzalo; Conrad, Louise; Culberson, Steven; Erickson, Gregg; Feyrer, Frederick; Fong, Stephanie; Gehrts, Karen; Grimaldo, Lenny; Herbold, Bruce; Kirsch, Joseph; Mueller-Solger, Anke; Slater, Steven B.; Sommer, Ted; Souza, Kelly; Van Nieuwenhuyse, Erwin

2014-01-01

In fall 2011, a large-scale investigation (fall low-salinity habitat investigation) was implemented by the Bureau of Reclamation in cooperation with the Interagency Ecological Program to explore hypotheses about the ecological role of low-salinity habitat in the San Francisco Estuary—specifically, hypotheses about the importance of fall low-salinity habitat to the biology of delta smelt Hypomesus transpacificus, a species endemic to the San Francisco Estuary and listed as threatened or endangered under federal and state endangered species legislation. The Interagency Ecological Program is a consortium of 10 agencies that work together to develop a better understanding of the ecology of the Estuary and the effects of the State Water Project and Federal Central Valley Project operations on the physical, chemical, and biological conditions of the San Francisco Estuary. The fall low-salinity habitat investigation constitutes one of the actions stipulated in the Reasonable and Prudent Alternative issued with the 2008 Biological Opinion of the U.S. Fish and Wildlife Service, which called for adaptive management of fall Sacramento-San Joaquin Delta outflow following “wet” and “above normal” water years to alleviate jeopardy to delta smelt and adverse modification of delta smelt critical habitat. The basic hypothesis of the adaptive management of fall low-salinity habitat is that greater outflows move the low-salinity zone (salinity 1–6), an important component of delta smelt habitat, westward and that moving the low-salinity zone westward of its position in the fall of recent years will benefit delta smelt, although the specific mechanisms providing such benefit are uncertain. An adaptive management plan was prepared to guide implementation of the adaptive management of fall low-salinity habitat and to reduce uncertainty. This report has three major objectives:

Reducing methylmercury accumulation in the food webs of San Francisco Bay and its local watersheds

International Nuclear Information System (INIS)

Davis, J.A.; Looker, R.E.; Yee, D.; Marvin-Di Pasquale, M.; Grenier, J.L.; Austin, C.M.; McKee, L.J.; Greenfield, B.K.; Brodberg, R.; Blum, J.D.

2012-01-01

San Francisco Bay (California, USA) and its local watersheds present an interesting case study in estuarine mercury (Hg) contamination. This review focuses on the most promising avenues for attempting to reduce methylmercury (MeHg) contamination in Bay Area aquatic food webs and identifying the scientific information that is most urgently needed to support these efforts. Concern for human exposure to MeHg in the region has led to advisories for consumption of sport fish. Striped bass from the Bay have the highest average Hg concentration measured for this species in USA estuaries, and this degree of contamination has been constant for the past 40 years. Similarly, largemouth bass in some Bay Area reservoirs have some of the highest Hg concentrations observed in the entire US. Bay Area wildlife, particularly birds, face potential impacts to reproduction based on Hg concentrations in the tissues of several Bay species. Source control of Hg is one of the primary possible approaches for reducing MeHg accumulation in Bay Area aquatic food webs. Recent findings (particularly Hg isotope measurements) indicate that the decades-long residence time of particle-associated Hg in the Bay is sufficient to allow significant conversion of even the insoluble forms of Hg into MeHg. Past inputs have been thoroughly mixed throughout this shallow and dynamic estuary. The large pool of Hg already present in the ecosystem dominates the fraction converted to MeHg and accumulating in the food web. Consequently, decreasing external Hg inputs can be expected to reduce MeHg in the food web, but it will likely take many decades to centuries before those reductions are achieved. Extensive efforts to reduce loads from the largest Hg mining source (the historic New Almaden mining district) are underway. Hg is spread widely across the urban landscape, but there are a number of key sources, source areas, and pathways that provide opportunities to capture larger quantities of Hg and reduce loads

Reducing methylmercury accumulation in the food webs of San Francisco Bay and its local watersheds

Energy Technology Data Exchange (ETDEWEB)

Davis, J.A., E-mail: jay@sfei.org [San Francisco Estuary Institute, 4911 Central Avenue, Richmond, CA 94804 (United States); Looker, R.E. [San Francisco Bay Regional Water Quality Control Board, 1515 Clay Street, Suite 1400, Oakland, CA 94612 (United States); Yee, D. [San Francisco Estuary Institute, 4911 Central Avenue, Richmond, CA 94804 (United States); Marvin-Di Pasquale, M. [U.S. Geological Survey, Water Resources Division/MS 480, 345 Middlefield Road, Menlo Park, CA 94025 (United States); Grenier, J.L. [San Francisco Estuary Institute, 4911 Central Avenue, Richmond, CA 94804 (United States); Austin, C.M. [San Francisco Bay Regional Water Quality Control Board, 1515 Clay Street, Suite 1400, Oakland, CA 94612 (United States); McKee, L.J.; Greenfield, B.K. [San Francisco Estuary Institute, 4911 Central Avenue, Richmond, CA 94804 (United States); Brodberg, R. [California Office of Environmental Health Hazard Assessment, California Environmental Protection Agency, 1001 I Street, Sacramento, CA 95812 (United States); Blum, J.D. [Department of Geological Sciences, University of Michigan, 1100 North University Avenue, Ann Arbor, MI 48109 (United States)

2012-11-15

San Francisco Bay (California, USA) and its local watersheds present an interesting case study in estuarine mercury (Hg) contamination. This review focuses on the most promising avenues for attempting to reduce methylmercury (MeHg) contamination in Bay Area aquatic food webs and identifying the scientific information that is most urgently needed to support these efforts. Concern for human exposure to MeHg in the region has led to advisories for consumption of sport fish. Striped bass from the Bay have the highest average Hg concentration measured for this species in USA estuaries, and this degree of contamination has been constant for the past 40 years. Similarly, largemouth bass in some Bay Area reservoirs have some of the highest Hg concentrations observed in the entire US. Bay Area wildlife, particularly birds, face potential impacts to reproduction based on Hg concentrations in the tissues of several Bay species. Source control of Hg is one of the primary possible approaches for reducing MeHg accumulation in Bay Area aquatic food webs. Recent findings (particularly Hg isotope measurements) indicate that the decades-long residence time of particle-associated Hg in the Bay is sufficient to allow significant conversion of even the insoluble forms of Hg into MeHg. Past inputs have been thoroughly mixed throughout this shallow and dynamic estuary. The large pool of Hg already present in the ecosystem dominates the fraction converted to MeHg and accumulating in the food web. Consequently, decreasing external Hg inputs can be expected to reduce MeHg in the food web, but it will likely take many decades to centuries before those reductions are achieved. Extensive efforts to reduce loads from the largest Hg mining source (the historic New Almaden mining district) are underway. Hg is spread widely across the urban landscape, but there are a number of key sources, source areas, and pathways that provide opportunities to capture larger quantities of Hg and reduce loads

Characterizing the Organic Matter in Surface Sediments from the San Juan Bay Estuary,

Science.gov (United States)

The San Juan Bay Estuary (SJBE) is located on the north coast of Puerto Rico and includes the San Juan Bay, San José Lagoon, La Torrecilla Lagoon and Piñones Lagoon, as well as the Martín Peña and the Suárez Canals. The SJBE watershed has the highest...

Benthic flux of nutrients and trace metals in the northern component of San Francisco Bay, California

Science.gov (United States)

Kuwabara, James S.; Topping, Brent R.; Parcheso, Francis; Engelstad, Anita C.; Greene, Valerie E.

2009-01-01

Two sets of sampling trips were coordinated in late summer 2008 (weeks of July 8 and August 6) to sample the interstitial and overlying bottom waters at 10 shallow locations (9 sites meters in depth) within the northern component of the San Francisco Bay/Delta (herein referred to as North Bay). The work was performed to better understand sources of biologically reactive solutes (namely, dissolved macronutrients and trace metals) that may affect the base of the food web in this part of the estuary. A nonmetallic pore-water profiler was used to obtain the first centimeter-scale estimates of the vertical solute-concentration gradients for diffusive-flux determinations. This study, performed in collaboration with scientists from San Francisco State University?s Romberg Tiburon Center for Environmental Studies, provides information to assist in developing and refining management strategies for the Bay/Delta system and supports efforts to monitor changes in food-web structure associated with regional habitat modifications directed by the California Bay-Delta Authority. On July 7, 2008, and August 5, 2008, pore-water profilers were successfully deployed at six North Bay sites per trip to measure the concentration gradient of dissolved macronutrients and trace metals near the sediment-water interface. Only two of the sites (433 and SSB009 within Honker Bay) were sampled in both series of profiler deployments. At each sampling site, profilers were deployed in triplicate, while discrete samples and dataloggers were used to collect ancillary data from both the water column and benthos to help interpret diffusive-flux measurements. Benthic flux of dissolved (0.2-micron filtered) inorganic phosphate (that is, soluble reactive phosphorus (SRP)) ranged from negligible levels (-0.003?0.005 millimole per square meter per day (mmole m-2d-1) at Site 4.1 outside Honker Bay) to 0.060?0.006 mmole m-2d-1 near the northern coast of Brown?s Island. Except for the elevated flux at Browns

Physical and chemical properties of San Francisco Bay waters, 1969-1976 (NODC Accession 8400194)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — One magnetic tape containing the physical and chemical properties of San Francisco Bay waters was forwarded to NODC by Mr. Richard Smith of the U.S Geological Survey...

Sediment transport of streams tributary to San Francisco, San Pablo, and Suisun Bays, California, 1909-66

Science.gov (United States)

Porterfield, George

1980-01-01

A review of historical sedimentation data is presented, results of sediment-data collection for water years 1957-59 are summarized, and long-term sediment-discharge estimates from a preliminary report are updated. Comparison of results based on 3 years of data to those for the 10 water years, 1957-66, provides an indication of the adequacy of the data obtained during the short period to define the long-term relation between sediment transport and streamflow. During 1909-66, sediment was transported to the entire San Francisco Bay system at an average rate of 8.6 million cubic yards per year. The Sacramento and San Joaquin River basins provided about 83% of the sediment inflow to the system annually during 1957-66 and 86% during 1909-66. About 98% of this inflow was measured or estimated at sediment measuring sites. Measured sediment inflow directly to the bays comprised only about 40% of the total discharged by basins directly tributary to the bays. About 90% of the total sediment discharge to the delta and the bays in the San Francisco Bay system thus was determined on the basis of systematic measurements. (USGS)

Deep Borehole Instrumentation Along San Francisco Bay Bridges: 1996 - 2003 and Strong Ground Motion Systhesis Along the San Francisco/Oakland Bay Bridge

Energy Technology Data Exchange (ETDEWEB)

Hutchings, L; Foxall, W; Kasameyer, P; larsen, S; Hayek, C; Tyler-Turpin, C; Aquilino, J; Long, L

2005-04-22

As a result of collaboration between the Berkeley Seismographic Station, Lawrence Livermore National Laboratory, and Caltrans, instrument packages have been placed in bedrock in six boreholes and two surface sites along the San Francisco/Oakland Bay Bridge. Since 1996 over 200 local earthquakes have been recorded. Prior to this study few seismic recording instruments existed in bed-rock in San Francisco Bay. We utilized the data to perform analysis of ground motion variability, wave passage, site response, and up-and down-hole wave propagation along the Bay Bridge. We also synthesized strong ground motion at nine locations along the Bay Bridge. Key to these studies is LLNL's effort to exploit the information available in weak ground motions (generally from earthquakes < M=4.0) to enhance predictions of seismic hazards. We found that Yerba Island has no apparent site response at the surface relative to a borehole site. The horizontal to vertical spectral ratio method best revealed no site response, while the complex signal spectral ratio method had the lowest variance for spectral ratios and best predicted surface recordings when the borehole recording was used as input. Both methods identified resonances at about the same frequencies. Regional attenuation results in a significant loss of high frequencies in both surface and borehole recordings. Records are band limited at near 3 Hz. Therefore a traditional rock outcrop site response, flat to high frequency in displacement, is not available. We applied a methodology to predict and synthesize strong ground motion along the San Francisco/Oakland Bay Bridge from a M=7.25 earthquake along the Hayward fault, about12 km distant. We synthesized for three-components and broad-band (0.0-25.0 Hz) ground motion accelerations, velocities, and displacements. We examined two different possible rupture scenarios, a ''mean'' and ''one standard deviation'' model. We combined the high

Mercury-contaminated hydraulic mining debris in San Francisco Bay

Science.gov (United States)

Bouse, Robin M.; Fuller, Christopher C.; Luoma, Samuel N.; Hornberger, Michelle I.; Jaffe, Bruce E.; Smith, Richard E.

2010-01-01

The hydraulic gold-mining process used during the California Gold Rush and in many developing countries today contributes enormous amounts of sediment to rivers and streams. Commonly, accompanying this sediment are contaminants such as elemental mercury and cyanide used in the gold extraction process. We show that some of the mercurycontaminated sediment created by hydraulic gold mining in the Sierra Nevada, between 1852 and 1884, ended up over 250 kilometers (km) away in San Francisco Bay; an example of the far-reaching extent of contamination from such activities.

Elevational dependence of projected hydrologic changes in the San Francisco Estuary and watershed

Science.gov (United States)

Knowles, N.; Cayan, D.R.

2004-01-01

California's primary hydrologic system, the San Francisco Estuary and its upstream watershed, is vulnerable to the regional hydrologic consequences of projected global climate change. Previous work has shown that a projected warming would result in a reduction of snowpack storage leading to higher winter and lower spring-summer streamflows and increased spring-summer salinities in the estuary. The present work shows that these hydrologic changes exhibit a strong dependence on elevation, with the greatest loss of snowpack volume in the 1300-2700 m elevation range. Exploiting hydrologic and estuarine modeling capabilities to trace water as it moves through the system reveals that the shift of water in mid-elevations of the Sacramento river basin from snowmelt to rainfall runoff is the dominant cause of projected changes in estuarine inflows and salinity. Additionally, although spring-summer losses of estuarine inflows are balanced by winter gains, the losses have a stronger influence on salinity since longer spring-summer residence times allow the inflow changes to accumulate in the estuary. The changes in inflows sourced in the Sacramento River basin in approximately the 1300-2200 m elevation range thereby lead to a net increase in estuarine salinity under the projected warming. Such changes would impact ecosystems throughout the watershed and threaten to contaminate much of California's freshwater supply.

Impact of the river Liffey discharge on nutrient and chlorophyll concentrations in the Liffey estuary and Dublin Bay (Irish Sea)

Science.gov (United States)

O'Higgins, T. G.; Wilson, J. G.

2005-08-01

Temperature, salinity, nutrients (total oxidised nitrogen (TON), ammonium (NH 4) and orthophosphate (PO 4)) and chlorophyll a were monitored in the Liffey estuary and Dublin Bay from June 2000 to June 2003. Four groups of sites were defined comprising the upper estuary (Gp. I), the outer estuary (Gp. III) with a small set (Gp. II) of sites between Groups I and III heavily influenced by the sewage treatment works outflow, and the Bay proper (Gp. IV). Riverine inputs of TON and PO 4 were calculated at an average of 826 t N y -1 and 31 t P y -1, respectively, and were largely controlled by flow rate. The sewage treatment works were identified as a major source of PO 4 and NH 4 to the system. Mixing in the upper estuary of nutrient limited saline waters with hypernutrified river water regularly (i.e. annually) produced relatively high concentrations of chlorophyll a (>10 mg chl a m -3), and also sporadic blooms with extremely high chlorophyll a values (max. 121.6 mg chl a m -3). These latter phytoplankton blooms occurred in high salinity waters and were due to mixing of nutrient limited saline waters and nutrient rich river waters. The mean annual flux of phytoplankton carbon from the river Liffey was calculated at 23.5 t C y -1, of which half was accumulated or remineralised in the estuary and did not enter the Bay. In the Bay proper (Gp. IV) summer nutrient concentrations dropped below detection limits, and chlorophyll a concentrations followed the classic pattern with a spring bloom maximum of 5.5 mg chl a m -3. This pattern in nutrients and chlorophyll a came from the advection of waters into the Bay from an offshore source. Overall while there was considerable evidence for eutrophication in the estuary, the bay itself showed little biological response to nutrient loading.

North Inlet-Winyah Bay National Estuarine Research Reserve's (NERR) Estuarine Water Quality Data for the North Inlet and Winyah Bay Estuaries, Georgetown, South Carolina: 1993-2002

Data.gov (United States)

Baruch Institute for Marine and Coastal Sciences, Univ of South Carolina — The North Inlet Estuary and the adjacent lower northeastern section of the Winyah Bay Estuary were designated as part of the National Estuarine Research Reserve...

Status, trends, and changes in freshwater inflows to bay systems in the Corpus Christi Bay National Estuary Program study area

Science.gov (United States)

Asquith, W.H.; Mosier, J. G.; Bush, P.W.

1997-01-01

This report presents the results of a study to quantify current (1983–93) mean freshwater inflows to the six bay systems (open water and wetlands) in the Corpus Christi Bay National Estuary Program study area, to test for historical temporal trends in inflows, and to quantify historical and projected changes in inflows. The report also addresses the adequacy of existing data to estimate freshwater inflows.

Groundwater quality in the North San Francisco Bay shallow aquifer, California

Science.gov (United States)

Bennett, George L.; Fram, Miranda S.

2018-02-23

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. The North San Francisco Bay Shallow Aquifer constitutes one of the study units being evaluated.

Modern sedimentary environments in a large tidal estuary, Delaware Bay

Science.gov (United States)

Knebel, H.J.

1989-01-01

Data from an extensive grid of sidescan-sonar records reveal the distribution of sedimentary environments in the large, tidally dominated Delaware Bay estuary. Bathymetric features of the estuary include large tidal channels under the relatively deep (> 10 m water depth) central part of the bay, linear sand shoals (2-8 m relief) that parallel the sides of the tidal channels, and broad, low-relief plains that form the shallow bay margins. The two sedimentary environments that were identified are characterized by either (1) bedload transport and/or erosion or (2) sediment reworking and/or deposition. Sand waves and sand ribbons, composed of medium to coarse sands, define sites of active bedload transport within the tidal channels and in gaps between the linear shoals. The sand waves have spacings that vary from 1 to 70 m, amplitudes of 2 m or less, and crestlines that are usually straight. The orientations of the sand waves and ribbons indicate that bottom sediment movement may be toward either the northwest or southeast along the trends of the tidal channels, although sand-wave asymmetry indicates that the net bottom transport is directed northwestward toward the head of the bay. Gravelly, coarse-grained sediments, which appear as strongly reflective patterns on the sonographs, are also present along the axes and flanks of the tidal channels. These coarse sediments are lag deposits that have developed primarily where older strata were eroded at the bay floor. Conversely, fine sands that compose the linear shoals and muddy sands that cover the shallow bay margins appear mainly on the sonographs either as smooth featureless beds that have uniform light to moderate shading or as mosaics of light and dark patches produced by variations in grain size. These acoustic and textural characteristics are the result of sediment deposition and reworking. Data from this study (1) support the hypothesis that bed configurations under deep tidal flows are functions of current

The distribution of 4-nonylphenol in marine organisms of North American Pacific Coast estuaries.

Science.gov (United States)

Diehl, Jennifer; Johnson, Sarah E; Xia, Kang; West, Amy; Tomanek, Lars

2012-04-01

One of the chemical breakdown products of nonylphenol ethoxylates, 4-nonylphenol (4-NP), accumulates in organisms and is of concern as an environmental pollutant due to its endocrine disrupting effects. We measured 4-NP levels in the seawater, sediment, and twelve organisms within the California estuary, Morro Bay, and examined biomagnification of 4-NP using stable isotope abundances (δ(15)N and δ(13)C) to quantify trophic position. 4-NP concentrations in organisms from Morro Bay included 25000±8600 ng g(-1) lw in liver of California sea lion, 14000±5600 ng g(-1) lw in liver of harbor porpoise, 138000±55000 ng g(-1) lw in liver of sea otters, 15700±3600 ng g(-1) lw in liver of seabirds, 36100±6100 ng g(-1) lw in arrow goby fish, 62800±28400 ng g(-1) lw in oysters, and 12700±1300 ng g(-1) lw in mussels. 4-NP levels generally showed a pattern of trophic dilution among organisms in Morro Bay, with exceptions of biomagnification observed between three trophic links: mussel to sea otter (BMF 10.9), oyster to sea otter (BMF 2.2), and arrow goby to staghorn sculpin (BMF 2.7). Our examination of other west coast estuaries of USA and Canada revealed that mean 4-NP concentrations in gobies and mussels from Morro Bay were significantly higher than those from a more urbanized estuary, San Francisco Bay (goby: 11100±3800 ng g(-1) lw) and from a remote estuary, Bamfield Inlet, Canada (goby: 9000±900 ng g(-1) lw, mussel: 6100±700 ng g(-1) lw). Relative to other estuaries worldwide, 4-NP levels in seawater (0.42±0.16 μg L(-1)) and sediment (53±14 ng g(-1) dw) of Morro Bay are low, but gobies and oysters have higher 4-NP levels than comparable fauna. Copyright © 2012 Elsevier Ltd. All rights reserved.

Avian communities in tidal salt marshes of San Francisco Bay: a review of functional groups by foraging guild and habitat association

Science.gov (United States)

Takekawa, John Y.; Woo, Isa; Gardiner, Rachel J.; Casazza, Michael L.; Ackerman, Joshua T.; Nur, Nadav; Liu, Leonard; Spautz, Hildie; Palaima, Arnas

2011-01-01

The San Francisco Bay estuary is highly urbanized, but it supports the largest remaining extent of tidal salt marshes on the west coast of North America as well as a diverse native bird community. San Francisco Bay tidal marshes are occupied by more than 113 bird species that represent 31 families, including five subspecies from three families that we denote as tidal-marsh obligates. To better identify the niche of bird species in tidal marshes, we present a review of functional groups based on foraging guilds and habitat associations. Foraging guilds describe the method by which species obtain food from tidal marshes, while habitat associations describe broad areas within the marsh that have similar environmental conditions. For example, the ubiquitous song sparrows (Alameda Melospiza melodia pusillula, Suisun M. m. maxillaris, and San Pablo M. m. samuelis) are surface-feeding generalists that consume prey from vegetation and the ground, and they are found across the entire marsh plain into the upland–marsh transition. In contrast, surface-feeding California black rails (Laterallus jamaicensis coturniculus) are cryptic, and generally restricted in their distribution to the mid- and high-marsh plain. Although in the same family, the endangered California clapper rail (Rallus longirostris obsoletus) has become highly specialized, foraging primarily on benthic fauna within marsh channels when they are exposed at low tide. Shorebirds such as the black-necked stilt (Himantopus mexicanus) typically probe in mud flats to consume macroinvertebrate prey, and are generally restricted to foraging on salt pans within the marsh plain, in ponds, or on mud flats during transitional stages of marsh evolution. The abundance and distribution of birds varies widely with changing water depths and vegetation colonization during different stages of restoration. Thus, tidal-marsh birds represent a rich and diverse community in bay marshes, with niches that may be distinguished by the

Padilla Bay: The Estuary Guide. Level 1. Publication No. 93-108.

Science.gov (United States)

Friesem, Judy

Padilla Bay National Estuarine Research Reserve in Washington is managed by the Washington State Department of Ecology, Shorelands and Coastal Zone management Program. This guide is designed for primary teachers to complement a visit to the reserve and is a useful resource to teach about estuaries, shorelands, and coastal resources. Activities are…

The Effect of Low Energy Turbulence in Estuary Margins on Fine Sediment Settling

Science.gov (United States)

Allen, R. M.; MacVean, L. J.; Tse, I.; Mazzaro, L. J.; Stacey, M. T.; Variano, E. A.

2014-12-01

Sediment dynamics in estuaries and near shore regions control the growth or erosion of the bed and fringing wetlands, determine the spread of sediment-associated contaminants, and limit the light availability for primary productivity through turbidity. In estuaries such as San Francisco Bay, this sediment is often cohesive, and can flocculate. Changes to the composition of the sediment and waters, the suspended sediment concentration, and the turbulence can all affect the flocculation of suspended sediment. In turn, flocculation controls the particle diameter, settling velocity, density, and particle inertia. These sediment properties drive the turbulent diffusivity, which balances with the settling velocity to impact the vertical distribution of sediment in the water column. The vertical profile strongly affects how sediment is transported through the estuary by lateral flow. Turbulence may also impact settling velocity in non-cohesive particles. In turbulence, dense particles may get trapped in convergent flow regions, thus particles are more likely to get swept along the downward side of a turbulent eddy than the upward side, resulting in enhanced settling velocities. We isolated the impacts of turbulence level, particle size and type, and suspended sediment concentration on particle settling velocities using uniform grain size particles in homogeneous isotropic turbulence. Controlling the turbulence in a well-defined turbulence tank, we used Two Acoustic Doppler Velocimeters, separated vertically, to measure turbulent velocities (w') and suspended sediment concentrations (C), which yield condition dependent settling velocities (ws), via equation 1. Lab characterization of particle settling velocities help to validate the method for measuring settling velocities in the field, and will serve as a foundation for an extensive field experiment in San Francisco Bay. Characterizing the velocity enhancement relative to the Stokes number, the Rouse number, and the

Heavy mineral analysis for assessing the provenance of sandy sediment in the San Francisco Bay Coastal System

Science.gov (United States)

Wong, Florence L.; Woodrow, Donald L.; McGann, Mary

2013-01-01

Heavy or high-specific gravity minerals make up a small but diagnostic component of sediment that is well suited for determining the provenance and distribution of sediment transported through estuarine and coastal systems worldwide. By this means, we see that surficial sand-sized sediment in the San Francisco Bay Coastal System comes primarily from the Sierra Nevada and associated terranes by way of the Sacramento and San Joaquin Rivers and is transported with little dilution through the San Francisco Bay and out the Golden Gate. Heavy minerals document a slight change from the strictly Sierran-Sacramento mineralogy at the confluence of the two rivers to a composition that includes minor amounts of chert and other Franciscan Complex components west of Carquinez Strait. Between Carquinez Strait and the San Francisco Bar, Sierran sediment is intermingled with Franciscan-modified Sierran sediment. The latter continues out the Gate and turns southward towards beaches of the San Francisco Peninsula. The Sierran sediment also fans out from the San Francisco Bar to merge with a Sierran province on the shelf in the Gulf of the Farallones. Beach-sand sized sediment from the Russian River is transported southward to Point Reyes where it spreads out to define a Franciscan sediment province on the shelf, but does not continue southward to contribute to the sediment in the Golden Gate area.

78 FR 1246 - Otay River Estuary Restoration Project; South San Diego Bay Unit and Sweetwater Marsh Unit of the...

Science.gov (United States)

2013-01-08

...-FF08RSDC00] Otay River Estuary Restoration Project; South San Diego Bay Unit and Sweetwater Marsh Unit of the... scoping with regard to the environmental impact statement (EIS) for the proposed Otay River Estuary... one of the following methods. Email: [email protected] . Please include ``Otay Estuary NOI'' in the...

Total petroleum hydrocarbons and trace metals in tropical estuary of Todos os Santos Bay, Brazil

Energy Technology Data Exchange (ETDEWEB)

Celino, Joil Jose; Oliveira, Olivia Maria Cordeiro de; Queiroz, Antonio Fernando de Souza [Universidade Federal da Bahia (UFBA), Salvador, BA (Brazil); Trigueis, Jorge Alberto [Universidade Estadual do Norte Fluminense (UENF), Campos dos Goytacazes, RJ (Brazil); Garcia, Karina Santos [Universidade Federal Fluminense (UFF), Niteroi, RJ (Brazil)

2008-07-01

As part of the environmental assessment within Todos os Santos Bay, State of Bahia - Brazil, in summer of 2005, superficial water and sediments samples of the mangrove were collected at five locations to determine the spatial distribution of anthropogenic pollutants in the Dom Joao estuary at the Sao Francisco do Conde Region. Sandy sediments with low organic matter content dominate the studied area. Trace metal levels indicated that sediments were moderately polluted with Cu (overall mean: 21.48 +/- 4.76 {mu}g.g-1 dry sediment), but not with Pb (15 +/- 8), Zn (38 +/- 10), Cr (15 +/- 7), Ni (13 +/- 6) and Cd (0.4 +/- 0.2). Depending on location, total petroleum hydrocarbons ranged from 1.6 to 10.6 {mu}g.g-1. To discriminate pattern differences and similarities among samples, principal component analysis (PCA) was performed using a correlation matrix. PCA revealed the latent relationships among all the stations investigated and confirmed our analytical results. Principal components analysis confirmed two regions according to their environmental quality. The results pointed out that almost all the area presented some substances that can cause adverse biological effects, especially in the outermost region where some metals are above TEL level. (author)

Arrival and expansion of the invasive foraminifera Trochammina hadai Uchio in Padilla Bay, Washington

Science.gov (United States)

McGann, Mary; Grossman, Eric E.; Takesue, Renee K.; Penttila, Dan; Walsh, John P.; Corbett, Reide

2012-01-01

Trochammina hadai Uchio, a benthic foraminifera native to Japanese estuaries, was first identified as an invasive in 1995 in San Francisco Bay and later in 16 other west coast estuaries. To investigate the timing of the arrival and expansion of this invasive species in Padilla Bay, Washington, we analyzed the distribution of foraminifera in two surface samples collected in 1971, in nine surface samples collected by Scott in 1972–1973, as well as in two cores (Padilla Flats 3 and Padilla V1/V2) obtained in 2004. Trochanimina hadai, originally identified as the native Trochammina pacifica Cushman in several early foraminiferal studies, dominates the assemblage of most of the surface samples. In the Padilla V1/V2 and Padilla Flats 3 cores, the species' abundance follows a pattern of absence, first appearance, rapid expansion commonly seen shortly after the arrival of a successful biological invasion, setback, and second expansion. Using Q-mode cluster analysis, pre-expansion and expansion assemblages were identified. Pb-210 dating of these cores proved unsuccessful. However, based on T. hadai's first appearance occurring stratigraphically well above sedimentological changes in the cores that reflect deposition of sediments in the bay due to previous diversions of the Skagit River, and its dominance in the early 1970s surface samples, we conclude that the species arrived in Padilla Bay somewhere between the late 1800s and 1971. Trochammina hadai may have been introduced into the bay in the 1930s when oyster culturing began there or, at a minimum, ten years prior to its appearance in San Francisco Bay.

Spatial and temporal trends of contaminants in eggs of wading birds from San Francisco Bay, California

Science.gov (United States)

Hothem, R.L.; Roster, D.L.; King, K.A.; Keldsen, T.J.; Marois, Katherine C.; Wainwright, S.E.

1995-01-01

Between 1989 and 1991, reproduction by black-crowned night-herons (Nycticorax nycticorax) and snowy egrets (Egretta thula) was studied at sites in San Francisco Bay. Eggs were collected from these and other bay sites and from South Wilbur Flood Area, a reference site in California's San Joaquin Valley. Eggs were analyzed for inorganic trace elements, organochlorine pesticides, and polychlorinated biphenyls (PCBs). Results were compared among sites and years and with results of previous studies. There was some evidence of impaired reproduction, but concentrations of contaminants were generally lower than threshold levels for such effects. Egg hatchability was generally good, with predation being the factor that most limited reproductive success. Mean PCB concentrations were generally higher in eggs from the south end of San Francisco Bay than from the north, but the only temporal change, an increase, was observed at Alcatraz Island. There were spatial differences for p,p'-DDE in night-heron eggs in 1990, but the highest mean concentration of DDE was in night-heron eggs from South Wilbur in 1991. Temporal declines in maximum concentrations of DDE in eggs were observed in the bay, but means did not change significantly over time, At Bair Island in the southern end of the bay, mean concentrations of mercury decreased while selenium increased in night-heron eggs over time, but there were no clear bay-wide spatial or temporal trends for either element.

Iron, Oil, and Emeryville: Resource Industrialization and Metropolitan Expansion in the San Francisco Bay Area, 1850-1900

OpenAIRE

Lunine, Seth

2013-01-01

Scholars have largely overlooked the formative role of industry in both California's economic development and the San Francisco Bay Area's metropolitan expansion during the late nineteenth century. Beginning in the early 1880s, leading firms in San Francisco's specialized industries, such as the iron and chemicals sectors, dispersed to the metropolitan periphery. This process of industrial suburbanization created an integrative metropolitan economy, as well as individual suburbs. In this di...

Mercury in San Francisco Bay forage fish

Energy Technology Data Exchange (ETDEWEB)

Greenfield, Ben K., E-mail: ben@sfei.or [San Francisco Estuary Institute, 7770 Pardee Lane, Oakland, CA 94621 (United States); Jahn, Andrew, E-mail: andyjahn@mac.co [1000 Riverside Drive, Ukiah, CA 95482 (United States)

2010-08-15

In the San Francisco Estuary, management actions including tidal marsh restoration could change fish mercury (Hg) concentrations. From 2005 to 2007, small forage fish were collected and analyzed to identify spatial and interannual variation in biotic methylmercury (MeHg) exposure. The average whole body total Hg concentration was 0.052 {mu}g g{sup -1} (wet-weight) for 457 composite samples representing 13 fish species. MeHg constituted 94% of total Hg. At a given length, Hg concentrations were higher in nearshore mudflat and wetland species (Clevelandia ios, Menidia audens, and Ilypnus gilberti), compared to species that move offshore (e.g., Atherinops affinis and Lepidogobius lepidus). Gut content analysis indicated similar diets between Atherinops affinis and Menidia audens, when sampled at the same locations. Hg concentrations were higher in sites closest to the Guadalupe River, which drains a watershed impacted by historic Hg mining. Results demonstrate that despite differences among years and fish species, nearshore forage fish exhibit consistent Hg spatial gradients. - Total mercury in estuarine forage fish varies with species, habitat, and proximity to a historic mercury mine.

Mercury in San Francisco Bay forage fish

International Nuclear Information System (INIS)

Greenfield, Ben K.; Jahn, Andrew

2010-01-01

In the San Francisco Estuary, management actions including tidal marsh restoration could change fish mercury (Hg) concentrations. From 2005 to 2007, small forage fish were collected and analyzed to identify spatial and interannual variation in biotic methylmercury (MeHg) exposure. The average whole body total Hg concentration was 0.052 μg g -1 (wet-weight) for 457 composite samples representing 13 fish species. MeHg constituted 94% of total Hg. At a given length, Hg concentrations were higher in nearshore mudflat and wetland species (Clevelandia ios, Menidia audens, and Ilypnus gilberti), compared to species that move offshore (e.g., Atherinops affinis and Lepidogobius lepidus). Gut content analysis indicated similar diets between Atherinops affinis and Menidia audens, when sampled at the same locations. Hg concentrations were higher in sites closest to the Guadalupe River, which drains a watershed impacted by historic Hg mining. Results demonstrate that despite differences among years and fish species, nearshore forage fish exhibit consistent Hg spatial gradients. - Total mercury in estuarine forage fish varies with species, habitat, and proximity to a historic mercury mine.

Sub-tidal benthic habitats of central San Francisco Bay and offshore Golden Gate area: A review

Science.gov (United States)

Greene, H. Gary; Endris, Charles; Vallier, Tracy; Golden, Nadine E.; Cross, Jeffery; Ryan, Holly F.; Dieter, Bryan; Niven, Eric; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

Deep-water potential estuarine and marine benthic habitat types were defined from a variety of new and interpreted data sets in central San Francisco Bay and offshore Golden Gate area including multibeam echosounder (MBES), side-scan sonar and bottom grab samples. Potential estuarine benthic habitats identified for the first time range from hard bedrock outcrops on island and mainland flanks and some Bay floor

Space use and habitat selection of migrant and resident American Avocets in San Francisco Bay

Science.gov (United States)

Demers, Scott A.; Takekawa, John Y.; Ackerman, Joshua T.; Warnock, N.; Athearn, N.D.

2010-01-01

San Francisco Bay is a wintering area for shorebirds, including American Avocets (Recurvirostra americana). Recently, a new resident population of avocets has emerged, presumably because of the development of tidal marshes into salt-evaporation ponds. In habitat restoration now underway, as many as 90% of salt ponds will be restored to tidal marsh. However, it is unknown if wintering and resident avocets coexist and if their requirements for space and habitat differ, necessitating different management for their populations to be maintained during restoration. We captured and radio-marked wintering avocets at a salt pond and a tidal flat to determine their population status (migrant or resident) and examine their space use and habitat selection. Of the radio-marked avocets, 79% were migrants and 21% were residents. At the salt pond, residents' fidelity to their location of capture was higher, and residents moved less than did migrants from the same site. Conversely, on the tidal flat, fidelity of residents to their site of capture was lower, and residents' home ranges were larger than those of migrants from the same site. Habitat selection of migrants and residents differed little; however, capture site influenced habitat selection far more than the birds' status as migrants or residents. Our study suggests that individual avocets have high site fidelity while wintering in San Francisco Bay, although the avocet as a species is plastic in its space use and habitat selection. This plasticity may allow wintering migrant and resident avocets to adapt to habitat change in San Francisco Bay. ?? The Cooper Ornithological Society 2010.

Earthquake and human impact on the sedimentology and geochemistry of Ahuriri Estuary, Hawke's Bay

International Nuclear Information System (INIS)

Chague-Goff, C.; Nichol, S.L.; Ditchburn, R.G.; Trompetter, W.J.; Sutherland, V.T.

1998-01-01

Three cores were collected from the intertidal and salt marsh sediments in Ahuriri Estuary, Hawke's Bay, and analysed by sedimentological, chemical and geochronological techniques. Signatures of various events, of both natural and anthropogenic origin, were identified. Evidence for the 1931 Hawke's Bay earthquake, which resulted in an uplift of one to two metres in the Napier area, is given by a change in grainsize distribution in a core from the southern shore of the Lower Estuary. The change to a high energy environment, similar to the present one in the Lower Estuary, has resulted in deposition of sand over fine silt. The data suggest increased sediment accumulation rates following the uplift event, which might be attributed to increased erosion in the upper catchment. There is no evidence of the earthquake at the two other sites sampled, which is probably due to their more sheltered location in the estuary. Post-European settlement impact is mainly restricted to the Lower Estuary, where increased concentrations of Zn, Cr, Pb and Cu may be due to industrial discharges. Evidence of agricultural runoff is given by an increase in Cu concentrations near the Poraiti Hills. The chemical data (Cl and S) suggest a change in the depositional environment in the Upper Estuary due to increased freshwater influx and/or decrease in seawater influence. Dating by 210 Pb infers that this occurred prior to 1931, but the origin and timing of the event are still to be determined. Sediment accumulation rates have averaged 2.5 mm/yr for the last 45 years in the Lower Estuary and 3.8 mm/yr for the last 70 years or so in the Upper Estuary. The variation probably reflects the difference in depositional environment, from a high energy environment dominated by tidal and wave action to a low energy environment with additional organic and fine sediment input from stream runoff. The various signatures identified are based on known events but may be used for identifying events in other less

Mercury burdens in Chinese mitten crabs (Eriocheir sinensis) in three tributaries of southern San Francisco Bay, California, USA

Energy Technology Data Exchange (ETDEWEB)

Hui, Clifford A. [US Geological Survey, 7801 Folsom Blvd, Suite 101, Sacramento, CA 95826 (United States)]. E-mail: bioinvestigations@sbcglobal.net; Rudnick, Deborah [Department of Environmental Science, Policy and Management, University of California, Berkeley, CA 94720 (United States); Williams, Erin [US Fish and Wildlife Service, 4001 N. Wilson Way, Stockton, CA 95205 (United States)

2005-02-01

Chinese mitten crabs (Eriocheir sinensis), endemic to Asia, were first reported in the San Francisco Bay in 1992. They are now established in nearly all San Francisco Bay tributaries. These crabs accumulate more metals, such as mercury, than crustaceans living in the water column. Because their predators include fish, birds, mammals and humans, their mercury burdens have an exceptional potential to impact the ecosystem and public health. We sought to elucidate the potential threat of mitten crab mercury burdens in three adjacent streams in southern San Francisco Bay, one of which is known to be contaminated with mercury. Mitten crabs had hepatopancreas concentrations of total mercury and methylmercury that did not differ among streams. The maximum burden we measured was below the action level of 1 ppm recommended by the USEPA. Hepatopancreas concentrations of methylmercury declined with increasing crab size, suggesting a mechanism for mercury excretion and that predators might reduce mercury exposure if they select larger crabs. Because mercury may be heterogeneously distributed among tissues, estimation of the impacts of crab mercury burdens on the environment requires more data on the feeding preferences of predators. - Hepatopancreas concentrations of mercury decline with crab size, which may have important consequences for bio-magnification in food webs.

Mercury burdens in Chinese mitten crabs (Eriocheir sinensis) in three tributaries of southern San Francisco Bay, California, USA

International Nuclear Information System (INIS)

Hui, Clifford A.; Rudnick, Deborah; Williams, Erin

2005-01-01

Chinese mitten crabs (Eriocheir sinensis), endemic to Asia, were first reported in the San Francisco Bay in 1992. They are now established in nearly all San Francisco Bay tributaries. These crabs accumulate more metals, such as mercury, than crustaceans living in the water column. Because their predators include fish, birds, mammals and humans, their mercury burdens have an exceptional potential to impact the ecosystem and public health. We sought to elucidate the potential threat of mitten crab mercury burdens in three adjacent streams in southern San Francisco Bay, one of which is known to be contaminated with mercury. Mitten crabs had hepatopancreas concentrations of total mercury and methylmercury that did not differ among streams. The maximum burden we measured was below the action level of 1 ppm recommended by the USEPA. Hepatopancreas concentrations of methylmercury declined with increasing crab size, suggesting a mechanism for mercury excretion and that predators might reduce mercury exposure if they select larger crabs. Because mercury may be heterogeneously distributed among tissues, estimation of the impacts of crab mercury burdens on the environment requires more data on the feeding preferences of predators. - Hepatopancreas concentrations of mercury decline with crab size, which may have important consequences for bio-magnification in food webs

Metropolitan Transportation Commission, San Francisco Bay area : developing regional objectives and performance measures to improve system operations

Science.gov (United States)

2009-04-01

The Metropolitan Transportation Commission (MTC) uses an objectives-driven, performance-based approach in its transportation planning for the San Francisco Bay Area. This approach focuses attention on transportation investments of highest priority. T...

Macroinvertebrate Prey Availability and Fish Diet Selectivity in Relation to Environmental Variables in Natural and Restoring North San Francisco Bay Tidal Marsh Channels

OpenAIRE

Emily R. Howe; Charles A. Simenstad; Jason D. Toft; Jeffrey R. Cordell; Stephen M. Bollens

2014-01-01

Tidal marsh wetlands provide important foraging habitat for a variety of estuarine fishes. Prey organisms include benthic–epibenthic macroinvertebrates, neustonic arthropods, and zooplankton. Little is known about the abundance and distribution of interior marsh macroinvertebrate communities in the San Francisco Estuary (estuary). We describe seasonal, regional, and site variation in the composition and abundance of neuston and benthic–epibenthic macroinvertebrates that inhabit tidal marsh ch...

Effects of local geology on ground motion in the San Francisco Bay region, California—A continued study

Science.gov (United States)

Gibbs, James F.; Borcherdt, Roger D.

1974-01-01

Measurements of ground motion generated by nuclear explosions in Nevada have been completed for 99 locations in the San Francisco Bay region, California. The seismograms, Fourier amplitude spectra, spectral amplification curves for the signal, and the Fourier amplitude spectra of the seismic noise are presented for 60 locations. Analog amplifications, based on the maximum signal amplitude, are computed for an additional 39 locations. The recordings of the nuclear explosions show marked amplitude variations which are consistently related to the local geologic conditions of the recording site. The average spectral amplifications observed for vertical and horizontal ground motions are, respectively: (1, 1) for granite, (1.5, 1.6) for the Franciscan Formation, (2.3, 2.3), for other pre-Tertiary and Tertiary rocks, (3.0, 2.7) for the Santa Clara Formation, (3.3, 4.4) for older bay sediments, and (3.7, 11.3) for younger bay mud. Spectral amplification curves define predominant ground frequencies for younger bay mud sites and for some older bay sediment sites. The predominant frequencies for most sites were not clearly defined by the amplitude spectra computed from the seismic background noise. The intensities ascribed to various sites in the San Francisco Bay region for the California earthquake of April 18, 1906, are strongly dependent on distance from the zone of surface faulting and the geological character of the ground. Considering only those sites (approximately one square city block in size) for which there is good evidence for the degree of ascribed intensity, the intensities for 917 sites on Franciscan rocks generally decrease with the logarithm of distance as Intensity = 2.69 - 1.90 log (Distance Km). For sites on other geologic units, intensity increments, derived from this empirical rela.tion, correlate strongly with the Average Horizontal Spectral Amplifications (MISA) according to the empirical relation Intensity Increment= 0.27 + 2.70 log(AHSA). Average

50 CFR 226.219 - Critical habitat for the Southern Distinct Population Segment of North American Green Sturgeon...

Science.gov (United States)

2010-10-01

...″ W.), and Bonilla Point, British Columbia (48°35′30″ N./124°43′00″ W.); in Jefferson and Island... following coastal bays and estuaries in California, Oregon, and Washington: (i) San Francisco Bay, San Pablo Bay, and Suisun Bay in California. All tidally influenced areas of San Francisco Bay, San Pablo Bay...

Novel analyses of long-term data provide a scientific basis for chlorophyll-a thresholds in San Francisco Bay

Science.gov (United States)

Sutula, Martha; Kudela, Raphael; Hagy, James D.; Harding, Lawrence W.; Senn, David; Cloern, James E.; Bricker, Suzanne; Berg, Gry Mine; Beck, Marcus

2017-10-01

San Francisco Bay (SFB), USA, is highly enriched in nitrogen and phosphorus, but has been resistant to the classic symptoms of eutrophication associated with over-production of phytoplankton. Observations in recent years suggest that this resistance may be weakening, shown by: significant increases of chlorophyll-a (chl-a) and decreases of dissolved oxygen (DO), common occurrences of phytoplankton taxa that can form Harmful Algal Blooms (HAB), and algal toxins in water and mussels reaching levels of concern. As a result, managers now ask: what levels of chl-a in SFB constitute tipping points of phytoplankton biomass beyond which water quality will become degraded, requiring significant nutrient reductions to avoid impairments? We analyzed data for DO, phytoplankton species composition, chl-a, and algal toxins to derive quantitative relationships between three indicators (HAB abundance, toxin concentrations, DO) and chl-a. Quantile regressions relating HAB abundance and DO to chl-a were significant, indicating SFB is at increased risk of adverse HAB and low DO levels if chl-a continues to increase. Conditional probability analysis (CPA) showed chl-a of 13 mg m-3 as a "protective" threshold below which probabilities for exceeding alert levels for HAB abundance and toxins were reduced. This threshold was similar to chl-a of 13-16 mg m-3 that would meet a SFB-wide 80% saturation Water Quality Criterion (WQC) for DO. Higher "at risk" chl-a thresholds from 25 to 40 mg m-3 corresponded to 0.5 probability of exceeding alert levels for HAB abundance, and for DO below a WQC of 5.0 mg L-1 designated for lower South Bay (LSB) and South Bay (SB). We submit these thresholds as a basis to assess eutrophication status of SFB and to inform nutrient management actions. This approach is transferrable to other estuaries to derive chl-a thresholds protective against eutrophication.

Environmental Sensitivity Index (ESI) Atlas: San Francisco Bay - 1998, maps and geographic information systems data (NODC Accession 0036884)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set comprises the Environmental Sensitivity Index (ESI) maps for the shoreline of San Francisco Bay. ESI data characterize estuarine environments and...

Environmental Sensitivity Index (ESI) Atlas: San Francisco Bay, California maps and geographic information systems data (NODC Accession 0013224)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set comprises the Environmental Sensitivity Index (ESI) maps for the shoreline of San Francisco Bay. ESI data characterize estuarine environments and...

San Francisco Estuary Striped Bass Migration History Determined by Electron-microprobe Analysis of Otolith Sr/Ca Ratio

Energy Technology Data Exchange (ETDEWEB)

Ostrach, D J; Phillis, C C; Weber, P K; Ingram, B L; Zinkl, J G

2004-09-17

Habitat use has been shown to be an important factor in the bioaccumulation of contaminants in striped bass. This study examines migration in striped bass as part of a larger study investigating bioaccumulation and maternal transfer of xenobiotics to progeny in the San Francisco Estuary system. Habitat use, residence time and spawning migration over the life of females (n = 23) was studied. Female striped bass were collected between Knights Landing and Colusa on the Sacramento River during the spawning runs of 1999 and 2001. Otoliths were removed, processed and aged via otolith microstructure. Subsequently, otoliths were analyzed for strontium/calcium (Sr/Ca) ratio using an electron-microprobe to measure salinity exposure and to distinguish freshwater, estuary, and marine habitat use. Salinity exposure during the last year before capture was examined more closely for comparison of habitat use by the maternal parent to contaminant burden transferred to progeny. Results were selectively confirmed by ion microprobe analyses for habitat use. The Sr/Ca data demonstrate a wide range of migratory patterns. Age of initial ocean entry differs among individuals before returning to freshwater, presumably to spawn. Some fish reside in freshwater year-round, while others return to more saline habitats and make periodic migrations to freshwater. Frequency of habitat shifts and residence times differs among fish, as well as over the lifetime of individual fish. While at least one fish spent its final year in freshwater, the majority of spawning fish spent their final year in elevated salinity. However, not all fish migrated to freshwater to spawn in the previous year. Results from this investigation concerning migration history in striped bass can be combined with contaminant and histological developmental analyses to better understand the bioaccumulation of contaminants and the subsequent effects they and habitat use have on fish populations in the San Francisco Estuary system.

Population biology and distribution of the portunid crab Callinectes ornatus (Decapoda: Brachyura) in an estuary-bay complex of southern Brazil

OpenAIRE

Timoteo T. Watanabe; Bruno S. Sant'Anna; Gustavo Y. Hattori; Fernando J. Zara

2014-01-01

Trawl fisheries are associated with catches of swimming crabs, which are an important economic resource for commercial as well for small-scale fisheries. This study evaluated the population biology and distribution of the swimming crab Callinectes ornatus (Ordway, 1863) in the Estuary-Bay of São Vicente, state of São Paulo, Brazil. Crabs were collected from a shrimp fishing boat equipped with a semi-balloon otter-trawl net, on eight transects (four in the estuary and four in the bay) from Mar...

Delta smelt: Life history and decline of a once abundant species in the San Francisco Estuary

Science.gov (United States)

Moyle, Peter B.; Brown, Larry R.; Durand, John R; Hobbs, James A.

2016-01-01

This paper reviews what has been learned about Delta Smelt and its status since the publication of The State of Bay-Delta Science, 2008 (Healey et al. 2008). The Delta Smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain the population. As a listed species living in the central node of California’s water supply system, Delta Smelt has been the focus of a large research effort to understand causes of decline and identify ways to recover the species. Since 2008, a remarkable record of innovative research on Delta Smelt has been achieved, which is summarized here. Unfortunately, research has not prevented the smelt’s continued decline, which is the result of multiple, interacting factors. A major driver of decline is change to the Delta ecosystem from water exports, resulting in reduced outflows and high levels of entrainment in the large pumps of the South Delta. Invasions of alien species, encouraged by environmental change, have also played a contributing role in the decline. Severe drought effects have pushed Delta Smelt to record low levels in 2014–2015. The rapid decline of the species and failure of recovery efforts demonstrate an inability to manage the Delta for the “co-equal goals” of maintaining a healthy ecosystem and providing a reliable water supply for Californians. Diverse and substantial management actions are needed to preserve Delta Smelt.

Maps of Quaternary Deposits and Liquefaction Susceptibility in the Central San Francisco Bay Region, California

Science.gov (United States)

Witter, Robert C.; Knudsen, Keith L.; Sowers, Janet M.; Wentworth, Carl M.; Koehler, Richard D.; Randolph, Carolyn E.; Brooks, Suzanna K.; Gans, Kathleen D.

2006-01-01

This report presents a map and database of Quaternary deposits and liquefaction susceptibility for the urban core of the San Francisco Bay region. It supercedes the equivalent area of U.S. Geological Survey Open-File Report 00-444 (Knudsen and others, 2000), which covers the larger 9-county San Francisco Bay region. The report consists of (1) a spatial database, (2) two small-scale colored maps (Quaternary deposits and liquefaction susceptibility), (3) a text describing the Quaternary map and liquefaction interpretation (part 3), and (4) a text introducing the report and describing the database (part 1). All parts of the report are digital; part 1 describes the database and digital files and how to obtain them by downloading across the internet. The nine counties surrounding San Francisco Bay straddle the San Andreas fault system, which exposes the region to serious earthquake hazard (Working Group on California Earthquake Probabilities, 1999). Much of the land adjacent to the Bay and the major rivers and streams is underlain by unconsolidated deposits that are particularly vulnerable to earthquake shaking and liquefaction of water-saturated granular sediment. This new map provides a consistent detailed treatment of the central part of the 9-county region in which much of the mapping of Open-File Report 00-444 was either at smaller (less detailed) scale or represented only preliminary revision of earlier work. Like Open-File Report 00-444, the current mapping uses geomorphic expression, pedogenic soils, inferred depositional environments, and geologic age to define and distinguish the map units. Further scrutiny of the factors controlling liquefaction susceptibility has led to some changes relative to Open-File Report 00-444: particularly the reclassification of San Francisco Bay mud (Qhbm) to have only MODERATE susceptibility and the rating of artificial fills according to the Quaternary map units inferred to underlie them (other than dams - adf). The two colored

North Inlet • Winyah Bay (NIW) National Estuarine Research Reserve Meteorological Data, North Inlet Estuary, Georgetown, South Carolina: 1997 • 1999.

Data.gov (United States)

Baruch Institute for Marine and Coastal Sciences, Univ of South Carolina — The North Inlet Estuary and the adjacent lower northeastern section of Winyah Bay Estuary were designated as part of the National Estuarine Research Reserve System...

In-situ measurements of seismic velocities in the San Francisco Bay region...part II

Science.gov (United States)

Gibbs, James F.; Fumal, Thomas E.; Borcherdt, Roger D.

1976-01-01

Seismic wave velocities (compressional and shear) are important parameters for determining the seismic response characteristics of various geologic units when subjected to strong earthquake ground shaking. Seismic velocities of various units often show a strong correlation with the amounts of damage following large earthquakes and have been used as a basis for certain types of seismic zonation studies. Currently a program is in progress to measure seismic velocities in the San Francisco Bay region at an estimated 150 sites. At each site seismic travel times are measured in drill holes, normally at 2.5-m intervals to a depth of 30 m. Geologic logs are determined from drill hole cuttings, undisturbed samples, and penetrometer samples. The data provide a detailed comparison of geologic and seismic characteristics and provide parameters for estimating strong earthquake ground motions quantitatively at each of the site. A major emphasis of this program is to obtain a detailed comparison of geologic and seismic data on a regional scale for use in seismic zonation. The broad data base available in the San Francisco Bay region suggests using the area as a pilot area for the development of general techniques applicable to other areas.

Memory and Nostalgia in Youth Music Cultures: Finding the Vibe in the San Francisco Bay Area Rave Scene, 2002-2004

Directory of Open Access Journals (Sweden)

Eileen M Wu

2010-07-01

Full Text Available In the wake of the major commercial success of rave scenes in the San Francisco Bay Area, accompanied by an increasing crackdown on venues and promoters in the electronic dance music scene, this article follows the “death” of a rave scene and looks at some of the ways young people imagined and engaged with rave culture during that time. Looking specifically at how young people utilized remembrances and nostalgia to imbue their experiences with social meaning, the author provides a tentative case study on youth cultural formation in the late modern era. The article draws upon fieldwork and interviews conducted in the San Francisco Bay Area between 2002-2004.

78 FR 75249 - Safety Zone: Google's Night at Sea Fireworks Display, San Francisco Bay, Alameda, CA

Science.gov (United States)

2013-12-11

...-AA00 Safety Zone: Google's Night at Sea Fireworks Display, San Francisco Bay, Alameda, CA AGENCY: Coast... Google's Night at Sea Fireworks Displays on December 7, 2013 and December 14, 2013. These safety zones... Coast Guard to establish safety zones. Google will sponsor the Google's Night at Sea Fireworks Displays...

Microbial diversity and carbon cycling in San Francisco Bay wetlands

Energy Technology Data Exchange (ETDEWEB)

Theroux, Susanna [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; Hartman, Wyatt [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; He, Shaomei [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; Univ. of Wisconsin, Madison, WI (United States); Tringe, Susannah [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.

2014-03-21

Wetland restoration efforts in San Francisco Bay aim to rebuild habitat for endangered species and provide an effective carbon storage solution, reversing land subsidence caused by a century of industrial and agricultural development. However, the benefits of carbon sequestration may be negated by increased methane production in newly constructed wetlands, making these wetlands net greenhouse gas (GHG) sources to the atmosphere. We investigated the effects of wetland restoration on below-ground microbial communities responsible for GHG cycling in a suite of historic and restored wetlands in SF Bay. Using DNA and RNA sequencing, coupled with real-time GHG monitoring, we profiled the diversity and metabolic potential of wetland soil microbial communities. The wetland soils harbor diverse communities of bacteria and archaea whose membership varies with sampling location, proximity to plant roots and sampling depth. Our results also highlight the dramatic differences in GHG production between historic and restored wetlands and allow us to link microbial community composition and GHG cycling with key environmental variables including salinity, soil carbon and plant species.

Earthquake outlook for the San Francisco Bay region 2014–2043

Science.gov (United States)

Aagaard, Brad T.; Blair, James Luke; Boatwright, John; Garcia, Susan H.; Harris, Ruth A.; Michael, Andrew J.; Schwartz, David P.; DiLeo, Jeanne S.; Jacques, Kate; Donlin, Carolyn

2016-06-13

Using information from recent earthquakes, improved mapping of active faults, and a new model for estimating earthquake probabilities, the 2014 Working Group on California Earthquake Probabilities updated the 30-year earthquake forecast for California. They concluded that there is a 72 percent probability (or likelihood) of at least one earthquake of magnitude 6.7 or greater striking somewhere in the San Francisco Bay region before 2043. Earthquakes this large are capable of causing widespread damage; therefore, communities in the region should take simple steps to help reduce injuries, damage, and disruption, as well as accelerate recovery from these earthquakes.

Contrasting mercury and manganese deposition in a mangrove-dominated estuary (Guaratuba Bay, Brazil)

Science.gov (United States)

Sanders, C. J.; Santos, I. R.; Silva-Filho, E. V.; Patchineelam, S. R.

2008-08-01

Sediment cores were taken at seven sites along the mangrove-bound Guaratuba Bay estuary (southern Brazil), with the purpose of assessing conditions controlling Hg deposition along a horizontal estuarine sediment gradient. The data suggest contrasting depositional patterns for Hg and Mn in this relatively pristine setting. Total Hg contents of bulk sediments ranged from 12 to 36 ng/g along the estuary, the highest values being found in muddier organic-rich sediments of the upper estuary (the corresponding mud gradient is 12 to 42 wt.%, and the organic matter gradient 4 to 10 wt.%). Thus, the deposition of fine sediments relatively enriched in mercury occurs primarily in closer proximity to the freshwater source. The data also indicate a reverse gradient in reactive Mn contents, ranging from 29 to 81 μg/g, and increasing seaward. This implies that reactive Mn is mobilized from fine-grained reducing mangrove forest sediments in the upper estuary, and deposited downstream in sandier, oxygen-rich nearshore sediments. These results suggest that mangrove-surrounded estuaries may act as barriers to mercury transport to coastal waters, but as a source of manganese. The present findings also imply that reactive Mn may be used as an indication of Hg depositional patterns in other similar coastal sedimentary settings.

Novel Analyses of Long-Term Data Provide a Scientific Basis for Chlorophyll-a Thresholds in San Francisco Bay

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San Francisco Bay (SFB), USA, is highly enriched in nitrogen and phosphorus, but has been resistant to the classic symptoms of eutrophication associated with over-production of phytoplankton. Observations in recent years suggest that this resistance may be weakening, shown by: si...

Deep nirS amplicon sequencing of San Francisco Bay sediments enables prediction of geography and environmental conditions from denitrifying community composition.

Science.gov (United States)

Lee, Jessica A; Francis, Christopher A

2017-12-01

Denitrification is a dominant nitrogen loss process in the sediments of San Francisco Bay. In this study, we sought to understand the ecology of denitrifying bacteria by using next-generation sequencing (NGS) to survey the diversity of a denitrification functional gene, nirS (encoding cytchrome-cd 1 nitrite reductase), along the salinity gradient of San Francisco Bay over the course of a year. We compared our dataset to a library of nirS sequences obtained previously from the same samples by standard PCR cloning and Sanger sequencing, and showed that both methods similarly demonstrated geography, salinity and, to a lesser extent, nitrogen, to be strong determinants of community composition. Furthermore, the depth afforded by NGS enabled novel techniques for measuring the association between environment and community composition. We used Random Forests modelling to demonstrate that the site and salinity of a sample could be predicted from its nirS sequences, and to identify indicator taxa associated with those environmental characteristics. This work contributes significantly to our understanding of the distribution and dynamics of denitrifying communities in San Francisco Bay, and provides valuable tools for the further study of this key N-cycling guild in all estuarine systems. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

PCDD/F, PCB, HXCBZ, PAH, AND PM EMISSION FACTORS FOR FIREPLACE AND WOODSTOVE COMBUSTION IN THE SAN FRANCISCO BAY REGION

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Emissions from residential fireplace and woodstove appliances burning fuels available from the San Francisco Bay area were sampled for polychlornated dibenzodioxins and dibenzofurans (PCDDs/Fs), polychlorinated biphenyls (PCBs), hexachlorobenzene (HxCBz), particulatematter (P...

75 FR 65985 - Safety Zone: Epic Roasthouse Private Party Firework Display, San Francisco, CA

Science.gov (United States)

2010-10-27

... the navigable waters of San Francisco Bay 1,000 yards off Epic Roasthouse Restaurant, San Francisco.... Wright, Program Manager, Docket Operations, telephone 202-366-9826. SUPPLEMENTARY INFORMATION: Regulatory... waters of San Francisco Bay, 1,000 yards off Epic Roasthouse Restaurant, San Francisco, CA. The fireworks...

Rocks and geology in the San Francisco Bay region

Science.gov (United States)

Stoffer, Philip W.

2002-01-01

The landscape of the San Francisco Bay region is host to a greater variety of rocks than most other regions in the United States. This introductory guide provides illustrated descriptions of 46 common and important varieties of igneous, sedimentary, and metamorphic rock found in the region. Rock types are described in context of their identification qualities, how they form, and where they occur in the region. The guide also provides discussion about of regional geology, plate tectonics, the rock cycle, the significance of the selected rock types in relation to both earth history and the impact of mineral resources on the development in the region. Maps and text also provide information where rocks, fossils, and geologic features can be visited on public lands or in association with public displays in regional museums, park visitor centers, and other public facilities.

Remotely Sensing Pollution: Detection and Monitoring of PCBs in the San Francisco Bay

Science.gov (United States)

Hilton, A.; Kudela, R. M.; Bausell, J.

2016-12-01

While the EPA banned polychlorinated biphenyls (PCBs) in 1977, they continue to persist in San Francisco Bay (SF Bay), often at dangerously high concentrations due to their long half-life. However, in spite of their associated health and environmental risks, PCB monitoring within SF Bay is extremely limited, due in large part to the high costs, both in terms of labor and capital that are associated with it. In this study, a cost effective alternative to in-situ PCB sampling is presented by demonstrating the feasibility of PCB detection via remote sensing. This was done by first establishing relationships between in-situ measurements of sum of 40 PCB concentrations and total suspended sediment concentration (SSC) collected from 1998-2006 at 37 stations distributed throughout SF Bay. A correlation was discovered for all stations at (R2 =0.32), which improved markedly upon partitioning stations into north bay, (R2 =0.64), central bay (R2 =0.80) and south bay (R2 =0.52) regions. SSC was then compared from three USGS monitoring stations with temporally consistent Landsat 8 imagery. The resulting correlation between Landsat 8 (Rrs 654) and SSC measured at USGS stations (R2 =0.50) was validated using an Airborne Visible/ Infrared Imaging Spectrometer (AVIRIS) image. The end product is a two-step empirical algorithm that can derive PCB from Landsat 8 imagery within SF Bay. This algorithm can generate spatial PCB concentration maps for SF Bay, which can in turn be utilized to increase ability to forecast PCB concentration. The observation that correlation between AVIRIS (Rrs 657) and SSC was stronger than that of Landsat 8 suggests that the accuracy of this algorithm could be enhanced with improved atmospheric correction.

Tidal wetland vegetation and ecotone profiles: The Rush Ranch Open Space Preserve

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The Rush Ranch Open Space Preserve (Rush Ranch) is a component site of the San Francisco Bay National Estuarine Research Reserve (SF Bay NERR) that includes one of the largest undiked tidal wetlands in the San Francisco Estuary. The brackish tidal wetlands grade into transitional vegetation and unde...

Modeling the Joint Labor-Commute Engagement Decisions of San Francisco Bay Area Residents

OpenAIRE

Ory, David T.; Mokhtarian, Patricia L.

2005-01-01

Using socio-demographic, personality, and attitudinal data from 1,680 residents of the San Francisco Bay Area, we develop and estimate binary, multinomial, and nested logit models of the choice to work or not, whether or not to work at home, and whether to commute all of the time or some of the time (either by only working part time, or by working a compressed work week, or by telecommuting some of the time). To our knowledge, these are the first models of all these choices simultaneously. Th...

Improving Radar Quantitative Precipitation Estimation over Complex Terrain in the San Francisco Bay Area

Science.gov (United States)

Cifelli, R.; Chen, H.; Chandrasekar, V.

2017-12-01

A recent study by the State of California's Department of Water Resources has emphasized that the San Francisco Bay Area is at risk of catastrophic flooding. Therefore, accurate quantitative precipitation estimation (QPE) and forecast (QPF) are critical for protecting life and property in this region. Compared to rain gauge and meteorological satellite, ground based radar has shown great advantages for high-resolution precipitation observations in both space and time domain. In addition, the polarization diversity shows great potential to characterize precipitation microphysics through identification of different hydrometeor types and their size and shape information. Currently, all the radars comprising the U.S. National Weather Service (NWS) Weather Surveillance Radar-1988 Doppler (WSR-88D) network are operating in dual-polarization mode. Enhancement of QPE is one of the main considerations of the dual-polarization upgrade. The San Francisco Bay Area is covered by two S-band WSR-88D radars, namely, KMUX and KDAX. However, in complex terrain like the Bay Area, it is still challenging to obtain an optimal rainfall algorithm for a given set of dual-polarization measurements. In addition, the accuracy of rain rate estimates is contingent on additional factors such as bright band contamination, vertical profile of reflectivity (VPR) correction, and partial beam blockages. This presentation aims to improve radar QPE for the Bay area using advanced dual-polarization rainfall methodologies. The benefit brought by the dual-polarization upgrade of operational radar network is assessed. In addition, a pilot study of gap fill X-band radar performance is conducted in support of regional QPE system development. This paper also presents a detailed comparison between the dual-polarization radar-derived rainfall products with various operational products including the NSSL's Multi-Radar/Multi-Sensor (MRMS) system. Quantitative evaluation of various rainfall products is achieved

Slicing up the San Francisco Bay Area: Block kinematics and fault slip rates from GPS-derived surface velocities

Science.gov (United States)

d'Alessio, M. A.; Johanson, I.A.; Burgmann, R.; Schmidt, D.A.; Murray, M.H.

2005-01-01

Observations of surface deformation allow us to determine the kinematics of faults in the San Francisco Bay Area. We present the Bay Area velocity unification (BA??VU??, "bay view"), a compilation of over 200 horizontal surface velocities computed from campaign-style and continuous Global Positioning System (GPS) observations from 1993 to 2003. We interpret this interseismic velocity field using a three-dimensional block model to determine the relative contributions of block motion, elastic strain accumulation, and shallow aseismic creep. The total relative motion between the Pacific plate and the rigid Sierra Nevada/Great Valley (SNGV) microplate is 37.9 ?? 0.6 mm yr-1 directed toward N30.4??W ?? 0.8?? at San Francisco (??2??). Fault slip rates from our preferred model are typically within the error bounds of geologic estimates but provide a better fit to geodetic data (notable right-lateral slip rates in mm yr-1: San Gregorio fault, 2.4 ?? 1.0; West Napa fault, 4.0 ?? 3.0; zone of faulting along the eastern margin of the Coast Range, 5.4 ?? 1.0; and Mount Diablo thrust, 3.9 ?? 1.0 of reverse slip and 4.0 ?? 0.2 of right-lateral strike slip). Slip on the northern Calaveras is partitioned between both the West Napa and Concord/ Green Valley fault systems. The total convergence across the Bay Area is negligible. Poles of rotation for Bay Area blocks progress systematically from the North America-Pacific to North America-SNGV poles. The resulting present-day relative motion cannot explain the strike of most Bay Area faults, but fault strike does loosely correlate with inferred plate motions at the time each fault initiated. Copyright 2005 by the American Geophysical Union.

Electronic tagging of green sturgeon reveals population structure and movement among estuaries

Science.gov (United States)

Lindley, S.T.; Erickson, D.L.; Moser, M.L.; Williams, G.; Langness, O.P.; McCovey, B.W.; Belchik, M.; Vogel, D.; Pinnix, W.; Kelly, J.T.; Heublein, J.C.; Klimley, A.P.

2011-01-01

Green sturgeon Acipenser medirostris spend much of their lives outside of their natal rivers, but the details of their migrations and habitat use are poorly known, which limits our understanding of how this species might be affected by human activities and habitat degradation.We tagged 355 green sturgeon with acoustic transmitters on their spawning grounds and in known nonspawning aggregation sites and examined their movement among these sites and other potentially important locations using automated data-logging hydrophones. We found that green sturgeon inhabit a number of estuarine and coastal sites over the summer, including the Columbia River estuary, Willapa Bay, Grays Harbor, and the estuaries of certain smaller rivers in Oregon, especially the Umpqua River estuary. Green sturgeon from different natal rivers exhibited different patterns of habitat use; most notably, San Francisco Bay was used only by Sacramento River fish, while the Umpqua River estuary was used mostly by fish from the Klamath and Rogue rivers. Earlier work, based on analysis of microsatellite markers, suggested that the Columbia River mixed stock was mainly composed of fish from the Sacramento River, but our results indicate that fish from the Rogue and Klamath River populations frequently use the Columbia River as well. We also found evidence for the existence of migratory contingentswithin spawning populations.Our findings have significant implications for the management of the threatened Sacramento River population of green sturgeon, which migrates to inland waters outside of California where anthropogenic impacts, including fisheries bycatch and water pollution, may be a concern. Our results also illustrate the utility of acoustic tracking to elucidate the migratory behavior of animals that are otherwise difficult to observe. ?? American Fisheries Society 2011.

Environmental Conditions Associated with Elevated Vibrio parahaemolyticus Concentrations in Great Bay Estuary, New Hampshire.

Directory of Open Access Journals (Sweden)

Erin A Urquhart

Full Text Available Reports from state health departments and the Centers for Disease Control and Prevention indicate that the annual number of reported human vibriosis cases in New England has increased in the past decade. Concurrently, there has been a shift in both the spatial distribution and seasonal detection of Vibrio spp. throughout the region based on limited monitoring data. To determine environmental factors that may underlie these emerging conditions, this study focuses on a long-term database of Vibrio parahaemolyticus concentrations in oyster samples generated from data collected from the Great Bay Estuary, New Hampshire over a period of seven consecutive years. Oyster samples from two distinct sites were analyzed for V. parahaemolyticus abundance, noting significant relationships with various biotic and abiotic factors measured during the same period of study. We developed a predictive modeling tool capable of estimating the likelihood of V. parahaemolyticus presence in coastal New Hampshire oysters. Results show that the inclusion of chlorophyll a concentration to an empirical model otherwise employing only temperature and salinity variables, offers improved predictive capability for modeling the likelihood of V. parahaemolyticus in the Great Bay Estuary.

ASTER Flyby of San Francisco

Science.gov (United States)

2002-01-01

The Advanced Spaceborne Thermal Emission and Reflection radiometer, ASTER, is an international project: the instrument was supplied by Japan's Ministry of International Trade and Industry. A joint US/Japan science team developed algorithms for science data products, and is validating instrument performance. With its 14 spectral bands, extremely high spatial resolution, and 15 meter along-track stereo capability, ASTER is the zoom lens of the Terra satellite. The primary mission goals are to characterize the Earth's surface; and to monitor dynamic events and processes that influence habitability at human scales. ASTER's monitoring and mapping capabilities are illustrated by this series of images of the San Francisco area. The visible and near infrared image reveals suspended sediment in the bays, vegetation health, and details of the urban environment. Flying over San Francisco (3.2MB) (high-res (18.3MB)), we see the downtown, and shadows of the large buildings. Past the Golden Gate Bridge and Alcatraz Island, we cross San Pablo Bay and enter Suisun Bay. Turning south, we fly over the Berkeley and Oakland Hills. Large salt evaporation ponds come into view at the south end of San Francisco Bay. We turn northward, and approach San Francisco Airport. Rather than landing and ending our flight, we see this is as only the beginning of a 6 year mission to better understand the habitability of the world on which we live. For more information: ASTER images through Visible Earth ASTER Web Site Image courtesy of MITI, ERSDAC, JAROS, and the U.S./Japan ASTER Science Team

Long-term impacts due to sediment supply changes towards the San Francisco Bay-Delta system

Science.gov (United States)

Achete, F.; Van der Wegen, M. V.; Jaffe, B. E.

2012-12-01

The Sacramento-San Joaquin Delta and Watershed is the main source of fresh water and sediment to San Francisco Bay. Mid 19th century hydraulic mining in the catchment caused an excessive supply of sediment. After mining activities stopped, in the first part of the 20th century several hydraulic structures were built deviating fresh water and trapping sediment upstream. The main purpose of most of these structures is water storage for irrigation and/or water supply Wright and Schoellhamer (2004) show that from 1957 to 2001 the sediment load carried to San Francisco Bay has decreased by about one half. The lack of sediments may lead to a different erosion/deposition pattern in the Bay-Delta system causing problems like mud flat erosion, shift in navigation channel, land subsidence and changing habitat for endemic species. The objective of this work is to identify and quantify morphological shifts in the Bay-Delta system due to variation in fresh water and sediment supply. In this study, we couple the Delta and Bay in a unique model network (the Delta-Bay model). This coupling allows tracking of sediment from Sacramento via the Delta and Bay and through the Golden Gate, making it possible to identify erosion and deposition areas. The numerical model applied is an unstructured, process-based model (D-Flow Flexible Mesh developed by Deltares). It simulates the hydrodynamics and morphodynamics of the area on a detailed, 64000-node mesh (10-200m mesh length scale) on a timescale of minutes. The morphological impact is assessed for multiple scenarios with different input of sediment and fresh water. A statistical analysis is performed to account for uncertainty of model parameters and climate change impacts. The fresh water discharge already has a strong natural seasonal and inter-annual variation. The human impact by foreseen different water pumping strategies due to the peripheral canal will be considered. Jaffe et al. (2007) has shown that substantial morphological

APPLICATION OF GIS AND SATELLITE DATA IN THE INVESTIGATION OF BAYS AND ESTUARIAL ABRASION-ACCUMULATIVE JUMPERS OF THE VOLGOGRAD RESERVOIR

Directory of Open Access Journals (Sweden)

M. S. Baranova

2017-01-01

Full Text Available The paper presents some results of Volgograd reservoir bays investigation and their abrasion-accumulative jumpers in the estuarial alignments during field expeditionary researching and with the application of geoinformation systems and satellite data. Based on the results of long-term field observations and satellite data, it was founded that most of small and medium-sized bays have natural jumpers of abrasion-accumulative genesis now. The paper contains short characteristics of such bays as Dlinniy Lipoviy, Zharkova, Korotkiy Lipoviy, Bolshoy, Rostoviy, Mostovoy, Drugalka. The authors have created bathymetric maps and graphs of longitudinal profiles for the water areas of some of the bays on the right bank, calculated the areas of estuarial jumpers and the areas of the shallow water zone inside the bays. The bays, characterized in the entry gate by depths from 9 m to 16 m, do not have a predisposition to being overlapped by jumpers, and a number of bays are currently in the stage of separation. In the course of the investigation it was determined that the maximum depth of the break-away bays does not exceed six and half meters; the active process of detachment covers both small and medium-sized bays; among the studied bays considerable areas are occupied by shallow waters with depths of up to 2 meters; geoinformation systems and satellite data allow one to analyze, complete and generalize field research data and receive visual cartographic materials. Based on the results of bathymetric survey, there was revealed a fairly active accumulation of sediments in the abrasion-accumulative forms of the underwater and above-water relief of all the investigated reservoir bays.

Hyperspectral remote sensing and long term monitoring reveal watershed-estuary ecosystem interactions

Science.gov (United States)

Hestir, E. L.; Schoellhamer, D. H.; Santos, M. J.; Greenberg, J. A.; Morgan-King, T.; Khanna, S.; Ustin, S.

2016-02-01

Estuarine ecosystems and their biogeochemical processes are extremely vulnerable to climate and environmental changes, and are threatened by sea level rise and upstream activities such as land use/land cover and hydrological changes. Despite the recognized threat to estuaries, most aspects of how change will affect estuaries are not well understood due to the poorly resolved understanding of the complex physical, chemical and biological processes and their interactions in estuarine systems. Remote sensing technologies such as high spectral resolution optical systems enable measurements of key environmental parameters needed to establish baseline conditions and improve modeling efforts. The San Francisco Bay-Delta is a highly modified estuary system in a state of ecological crisis due to the numerous threats to its sustainability. In this study, we used a combination of hyperspectral remote sensing and long-term in situ monitoring records to investigate how water clarity has been responding to extreme climatic events, anthropogenic watershed disturbances, and submerged aquatic vegetation (SAV) invasions. From the long-term turbidity monitoring record, we found that water clarity underwent significant increasing step changes associated with sediment depletion and El Nino-extreme run-off events. Hyperspectral remote sensing data revealed that invasive submerged aquatic pant species have facultative C3 and C4-like photosynthetic pathways that give them a competitive advantage under the changing water clarity conditions of the Bay-Delta system. We postulate that this adaptation facilitated the rapid expansion of SAV following the significant step changes in increasing water clarity caused by watershed disturbances and the 1982-1983 El Nino events. Using SAV maps from hyperspectral remote sensing, we estimate that SAV-water clarity feedbacks were responsible for 20-70% of the increasing water clarity trend in the Bay-Delta. Ongoing and future developments in airborne and

Long path optical extinction and meteorology in the San Francisco bay area

Energy Technology Data Exchange (ETDEWEB)

Porch, W M; Galloway, T R; Green, T J; Ellsaesser, H W

1981-01-01

Comparison of night-time long path extinction (25 km) across San Francisco Bay and local meteorological measurements at Oakland Airport revealed a dominant role of boundary layer mixing on visibility. Inversion depth and inversion depth multiplied by wind speed were both strongly inversely correlated with night-time atmospheric extinction. Oakland Airport wind speed and humidity showed little correlation with the extinction measurements. Stellar extinction was also found to be sensitive to mixing depth. This is important as visibility and turbidity trend studies rarely include mixing depth measurements. These results indicate the importance of developing instruments to use the same light source for remote sensing of atmospheric constituents, wind and humidity.

Continuous water-quality and suspended-sediment transport monitoring in the San Francisco Bay, California, water years 2011–13

Science.gov (United States)

Buchanan, Paul A.; Downing-Kunz, Maureen; Schoellhamer, David H.; Shellenbarger, Gregory; Weidich, Kurt

2014-01-01

The U.S. Geological Survey (USGS) monitors water quality and suspended-sediment transport in the San Francisco Bay. The San Francisco Bay area is home to millions of people, and the bay teems with both resident and migratory wildlife, plants, and fish. Fresh water mixes with salt water in the bay, which is subject both to riverine and marine (tides, waves, influx of salt water) influences. To understand this environment, the USGS, along with its partners, has been monitoring the bay’s waters continuously since 1988. Several water-quality variables are of particular importance to State and Federal resource managers and are monitored at key locations throughout the bay. Salinity, which indicates the relative mixing of fresh and ocean waters in the bay, is derived from specific conductance measurements. Water temperature, along with salinity, affects the density of water, which causes gravity driven circulation patterns and stratification in the water column. Turbidity is measured using light-scattering from suspended solids in water, and is used as a surrogate for suspended-sediment concentration (SSC). Suspended sediment often carries adsorbed contaminants; attenuates sunlight in the water column; deposits on tidal marsh and intertidal mudflats, which can help sustain these habitats as sea level rises; and deposits in ports and shipping channels, which can necessitate dredging. Dissolved oxygen, which is essential to a healthy ecosystem, is a fundamental indicator of water quality, and its concentration is affected by water temperature, salinity, ecosystem metabolism, tidal currents, and wind. Tidal currents in the bay reverse four times a day, and wind direction and intensity typically change on a daily cycle: consequently, salinity, water temperature, suspendedsediment concentration, and dissolvedoxygen concentration vary spatially and temporally throughout the bay, and continuous measurements are needed to observe these changes. The purpose of this fact sheet

Continuous water-quality and suspended-sediment transport monitoring in the San Francisco Bay, California, water years 2014–15

Science.gov (United States)

Buchanan, Paul A.; Downing-Kunz, Maureen; Schoellhamer, David H.; Livsey, Daniel N.

2018-03-08

The U.S. Geological Survey (USGS) monitors water quality and suspended-sediment transport in the San Francisco Bay (bay) as part of a multi-agency effort to address management, water supply, and ecological concerns. The San Francisco Bay area is home to millions of people, and the bay teems both with resident and with migratory wildlife, plants, and fish. Freshwater mixes with salt water in the bay, which is subject both to riverine influences (floods, droughts, managed reservoir releases and freshwater diversions) and to marine influences (tides, waves, effects of salt water). To understand this environment, the USGS, along with its partners (see “Acknowledgements”), has been monitoring the bay’s waters continuously since 1988. Several water-quality variables are of particular importance to State and Federal resource managers and are monitored at key locations throughout the bay (fig. 1). Salinity, which indicates the relative mixing of fresh and ocean waters in the bay, is derived from specific conductance measurements. Water temperature, along with salinity, affects the density of water, which controls gravity-driven circulation patterns and stratification in the water column. Turbidity, a measure of light scattered from suspended particles in the water, is used to estimate suspended-sediment concentration (SSC). Suspended sediment affects the bay in multiple ways: attenuation of sunlight in the water column, affecting phytoplankton growth; deposition on tidal marsh and intertidal mudflats, which can help sustain these habitats as sea level rises; deposition in ports and shipping channels, which can necessitate dredging; and often, adsorption of contaminants, affecting their distribution and concentrations in the environment. Dissolved oxygen concentration, essential to a healthy ecosystem and a fundamental indicator of water quality, is affected by water temperature, salinity, ecosystem metabolism, tidal currents, and wind. Tidal currents in the bay

Metagenomic evidence for reciprocal particle exchange between the mainstem estuary and lateral bay sediments of the lower Columbia River

Directory of Open Access Journals (Sweden)

Mariya W Smith

2015-10-01

Full Text Available Lateral bays of the lower Columbia River estuary are areas of enhanced water retention that influence net ecosystem metabolism through activities of their diverse microbial communities. Metagenomic characterization of sediment microbiota from three disparate sites in two brackish lateral bays (Baker and Youngs produced approximately 100 Gbp of DNA sequence data analyzed subsequently for predicted SSU rRNA and peptide-coding genes. The metagenomes were dominated by Bacteria. A large component of Eukaryota was present in Youngs Bay samples, i.e. the inner bay sediment was enriched with the invasive New Zealand mudsnail, Potamopyrgus antipodarum, known for high ammonia production. The metagenome was also highly enriched with an archaeal ammonia oxidizer closely related to Nitrosoarchaeum limnia. Combined analysis of sequences and continuous, high-resolution time series of biogeochemical data from fixed and mobile platforms revealed the importance of large-scale reciprocal particle exchanges between the mainstem estuarine water column and lateral bay sediments. Deposition of marine diatom particles in sediments near Youngs Bay mouth was associated with a dramatic enrichment of Bacteroidetes (58% of total Bacteria and corresponding genes involved in phytoplankton polysaccharide degradation. The Baker Bay sediment metagenome contained abundant Archaea, including diverse methanogens, as well as functional genes for methylotrophy and taxonomic markers for syntrophic bacteria, suggesting that active methane cycling occurs at this location. Our previous work showed enrichments of similar anaerobic taxa in particulate matter of the mainstem estuarine water column. In total, our results identify the lateral bays as both sources and sinks of biogenic particles significantly impacting microbial community composition and biogeochemical activities in the estuary.

The significance of ultra-refracted surface gravity waves on sheltered coasts, with application to San Francisco Bay

Science.gov (United States)

Hanes, D.M.; Erikson, L.H.

2013-01-01

Ocean surface gravity waves propagating over shallow bathymetry undergo spatial modification of propagation direction and energy density, commonly due to refraction and shoaling. If the bathymetric variations are significant the waves can undergo changes in their direction of propagation (relative to deepwater) greater than 90° over relatively short spatial scales. We refer to this phenomenon as ultra-refraction. Ultra-refracted swell waves can have a powerful influence on coastal areas that otherwise appear to be sheltered from ocean waves. Through a numerical modeling investigation it is shown that San Francisco Bay, one of the earth's largest and most protected natural harbors, is vulnerable to ultra-refracted ocean waves, particularly southwest incident swell. The flux of wave energy into San Francisco Bay results from wave transformation due to the bathymetry and orientation of the large ebb tidal delta, and deep, narrow channel through the Golden Gate. For example, ultra-refracted swell waves play a critical role in the intermittent closure of the entrance to Crissy Field Marsh, a small restored tidal wetland located on the sheltered north-facing coast approximately 1.5 km east of the Golden Gate Bridge.

Remote sensing of California estuaries: Monitoring climate change and invasive species

Science.gov (United States)

Mulitsch, Melinda Jennifer

The spread of invasive species and climate change are among the most serious global environmental threats. The goal of this dissertation was to link inter-annual climate change and biological invasions at a landscape scale using novel remote sensing techniques applied to the San Francisco Bay/Sacramento- San Joaquin Delta Estuary. I evaluated the use of hyperspectral imagery for detecting invasive aquatic species in the Delta using 3 m HyMap hyperspectral imagery. The target invasive aquatics weeds were the emergent water hyacinth (Eichhornia crassipes) and the submerged Brazilian waterweed (Egeria densa). Data were analyzed using linear spectral mixture analysis (SMA). The results show the weeds were mapped with a classification accuracy of 90.6% compared to 2003 sample sites and 82.6% accuracy compared to 2004 sample sites. Brazilian waterweed locations were successfully mapped but the abundances were overestimated because we did not separate it from other submerged aquatic vegatation (SAV). I evaluated 3 m HyMap imagery, from 2004, for SAV species in the Delta, including: Brazilian waterweed ( Egeria densa), Eurasian watermilfoil (Myriophyllum spicatum ), curlyleaf pondweed (Potamogeton crispus), coontail (Ceratophyllum demersum), American pondweed (Potamogeton nodosus), fanwort (Cabomba caroliniana), and common elodea (Elodea canadensis). Data were analyzed using SMA with a classification accuracy of 84.4%. Spectral simulations of Brazilian waterweed and American pondweed show how spectral properties can change at different water depths and varying water quality. Finally I address the effect of inter-annual climate change on the estuary ecology in the San Francisco Bay by analyzing current (2002) and historical (1994-1996) Airborne Visible Infrared Imaging Spectrometer (AVIRIS) datasets to map salt marsh species distribution. The species in the estuary, Salicornia virginica, Spartinia foliosa, Scirpus robustus, and Distichlis spicata undergo dramatic changes in

A novel method to develop an otolith microchemistry model to determine striped bass habitat use in the San Francisco Estuary

Energy Technology Data Exchange (ETDEWEB)

Phillis, C C; Ostrach, D J; Gras, M; Yin, Q; Ingram, B L; Zinkl, J G; Weber, P K

2006-06-14

Otolith Sr/Ca has become a popular tool for hind casting habitat utilization and migration histories of euryhaline fish. It can readily identify habitat shifts of diadromous fish in most systems. Inferring movements of fish within estuarine habitat, however, requires a model of that accounts of the local water chemistry and the response of individual species to that water chemistry, which is poorly understood. Modeling is further complicated by the fact that high marine Sr and Ca concentrations results in a rapid, nonlinear increase in water Sr/Ca and {sup 87}Sr/{sup 86}Sr between fresh and marine waters. Here we demonstrate a novel method for developing a salinity-otolith Sr/Ca model for the purpose of reconstructing striped bass (Morone saxatilis) habitat use in the San Francisco Bay estuary. We used correlated Sr/Ca and {sup 87}Sr/{sup 86}Sr ratios measurements from adult otoliths from striped bass that experienced a range of salinities to infer striped bass otolith Sr/Ca response to changes in salinity and water Sr/Ca ratio. Otolith {sup 87}Sr/{sup 86}Sr can be assumed to accurately record water {sup 87}Sr/{sup 86}Sr because there is no biological fractionation of Sr isotopes. Water {sup 87}Sr/{sup 86}Sr can in turn be used to estimate water salinity based on the mixing of fresh and marine water with known {sup 87}Sr/{sup 86}Sr ratios. The relationship between adjacent analyses on otoliths of Sr/Ca and {sup 87}Sr/{sup 86}Sr by LA-ICP-MS and MC-ICP-MS (r{sup 2} = 0.65, n = 66) is used to predict water salinity from a measured Sr/Ca ratio. The nature of this non-linear model lends itself well to identifying residence in the Delta and to a lesser extent Suisun Bay, but does not do well locating residence within the more saline bays west of Carquinez Strait. An increase in the number of analyses would improve model confidence, but ultimately the precision of the model is limited by the variability in the response of individual fish to water Sr/Ca.

Modified Mercalli intensities for some recent California earthquakes and historic San Francisco Bay Region earthquakes

Science.gov (United States)

Bakun, William H.

1998-01-01

Modified Mercalli Intensity (MMI) data for recent California earthquakes were used by Bakun and Wentworth (1997) to develop a strategy for bounding the location and moment magnitude M of earthquakes from MMI observations only. Bakun (Bull. Seismol. Soc. Amer., submitted) used the Bakun and Wentworth (1997) strategy to analyze 19th century and early 20th century San Francisco Bay Region earthquakes. The MMI data and site corrections used in these studies are listed in this Open-file Report. 

Acoustic tag detections of green sturgeon in the Columbia River and Coos Bay estuaries, Washington and Oregon, 2010–11

Science.gov (United States)

Hansel, Hal C.; Romine, Jason G.; Perry, Russell W.

2017-11-08

The Columbia River, in Washington and Oregon, and Coos Bay, in Oregon, are economically important shipping channels that are inhabited by several fishes protected under the Endangered Species Act (ESA). Maintenance of shipping channels involves dredge operations to maintain sufficient in-channel depths to allow large ships to navigate the waterways safely. Fishes entrained by dredge equipment often die or experience delayed mortality. Other potential negative effects of dredging include increased turbidity, reductions in prey resources, and the release of harmful contaminants from the dredged sediments. One species of concern is the ESA-listed green sturgeon (Acipenser medirostris; Southern Distinct Population Segment). In this study, we used acoustic telemetry to identify habitat use, arrival and departure timing, and the extent of upstream migration of green sturgeon in the Columbia River and Coos Bay to help inform dredge operations to minimize potential take of green sturgeon. Autonomous acoustic receivers were deployed in Coos Bay from the mouth to river kilometer (rkm) 21.6 from October 2009 through October 2010. In the Columbia River Estuary, receivers were deployed between the mouth and rkm 37.8 from April to November in 2010 and 2011. A total of 29 subadult and adult green sturgeon were tagged with temperature and pressure sensor tags and released during the study, primarily in Willapa Bay and Grays Harbor, Washington, and the Klamath River, Oregon. Green sturgeon detected during the study but released by other researchers also were included in the study.The number of tagged green sturgeon detected in the two estuaries differed markedly. In Coos Bay, only one green sturgeon was detected for about 2 hours near the estuary mouth. In the Columbia River Estuary, 9 green sturgeon were detected in 2010 and 10 fish were detected in 2011. Green sturgeon entered the Columbia River from May through October during both years, with the greatest numbers of fish being

Providing Specialty Care for the Poor and Underserved at Student-Run Free Clinics in the San Francisco Bay Area.

Science.gov (United States)

Liu, Max Bolun; Xiong, Grace; Boggiano, Victoria Lynn; Ye, Patrick Peiyong; Lin, Steven

2017-01-01

This report describes the model of specialty clinics implemented at Stanford University's two student-run free clinics, Arbor Free Clinic and Pacific Free Clinic, in the San Francisco Bay Area. We describe our patient demographic characteristics and the specialty services provided. We discuss challenges in implementing specialty care at student-run free clinics.

Holocene depositional history of a large glaciated estuary, Penobscot Bay, Maine

Science.gov (United States)

Knebel, H.J.

1986-01-01

Data from seismic-reflection profiles, sidescan sonar images, and sediment samples reveal the Holocene depositional history of the large (1100 km2) glaciated Penobscot Bay estuary of coastal Maine. Previous work has shown that the late Wisconsinan ice sheet retreated from the three main passages of the bay between 12,700 and 13,500 years ago and was accompanied by a marine transgression during which ice and sea were in contact. Isostatic recovery of the crust caused the bay to emerge during the immediate postglacial period, and relative sea level fell to at least -40 m sometime between 9000 and 11,500 years ago. During lowered sea level, the ancestral Penobscot River flowed across the subaerially exposed head of the bay and debouched into Middle Passage. Organic-matter-rich mud from the river was deposited rapidly in remnant, glacially scoured depressions in the lower reaches of Middle and West Passages behind a shallow (???20 m water depth) bedrock sill across the bay mouth. East Passage was isolated from the rest of the bay system and received only small amounts of locally derived fine-grained sediments. During the Holocene transgression that accompanied the eustatic rise of sea level, the locus of sedimentation shifted to the head of the bay. Here, heterogeneous fluvial deposits filled the ancestral valley of the Penobscot River as base level rose, and the migrating surf zone created a gently dipping erosional unconformity, marked by a thin (energy conditions and the waning influence of the Penobscot River at the head of the bay. In contrast, relatively thick (up to 25 m) silty clays accumulated within a subbottom trough in the western half of the bay head. This deposit apparently developed late in the transgression after sea level had reached -20 m and after the westward transport of fine-grained sediments from the Penobscot River had been established. During and since the late Holocene transgression of sea level, waves and currents have eroded, reworked, and

Prediction of maximum earthquake intensities for the San Francisco Bay region

Science.gov (United States)

Borcherdt, Roger D.; Gibbs, James F.

1975-01-01

The intensity data for the California earthquake of April 18, 1906, are strongly dependent on distance from the zone of surface faulting and the geological character of the ground. Considering only those sites (approximately one square city block in size) for which there is good evidence for the degree of ascribed intensity, the empirical relation derived between 1906 intensities and distance perpendicular to the fault for 917 sites underlain by rocks of the Franciscan Formation is: Intensity = 2.69 - 1.90 log (Distance) (km). For sites on other geologic units intensity increments, derived with respect to this empirical relation, correlate strongly with the Average Horizontal Spectral Amplifications (AHSA) determined from 99 three-component recordings of ground motion generated by nuclear explosions in Nevada. The resulting empirical relation is: Intensity Increment = 0.27 +2.70 log (AHSA), and average intensity increments for the various geologic units are -0.29 for granite, 0.19 for Franciscan Formation, 0.64 for the Great Valley Sequence, 0.82 for Santa Clara Formation, 1.34 for alluvium, 2.43 for bay mud. The maximum intensity map predicted from these empirical relations delineates areas in the San Francisco Bay region of potentially high intensity from future earthquakes on either the San Andreas fault or the Hazard fault.

Prediction of maximum earthquake intensities for the San Francisco Bay region

Energy Technology Data Exchange (ETDEWEB)

Borcherdt, R.D.; Gibbs, J.F.

1975-01-01

The intensity data for the California earthquake of Apr 18, 1906, are strongly dependent on distance from the zone of surface faulting and the geological character of the ground. Considering only those sites (approximately one square city block in size) for which there is good evidence for the degree of ascribed intensity, the empirical relation derived between 1906 intensities and distance perpendicular to the fault for 917 sites underlain by rocks of the Franciscan formation is intensity = 2.69 - 1.90 log (distance) (km). For sites on other geologic units, intensity increments, derived with respect to this empirical relation, correlate strongly with the average horizontal spectral amplifications (AHSA) determined from 99 three-component recordings of ground motion generated by nuclear explosions in Nevada. The resulting empirical relation is intensity increment = 0.27 + 2.70 log (AHSA), and average intensity increments for the various geologic units are -0.29 for granite, 0.19 for Franciscan formation, 0.64 for the Great Valley sequence, 0.82 for Santa Clara formation, 1.34 for alluvium, and 2.43 for bay mud. The maximum intensity map predicted from these empirical relations delineates areas in the San Francisco Bay region of potentially high intensity from future earthquakes on either the San Andreas fault or the Hayward fault.

Suspended particulate matter flocculation in a natural tidal wetland located in the San Francisco Estuary

Science.gov (United States)

Saraceno, J.; Bergamaschi, B. A.; Wright, S. A.; Boss, E.; Downing, B. D.; Fleck, J.; Ganju, N. K.

2011-12-01

flocculation. Additionally, the timing of flocculation was coincident with periods of elevated dissolved organic matter, suggesting organic matter played a role in the formation of large aggregates. Measurements of SPM organic content in ebb water revealed that SPM was enriched in organic matter by up to 50% following interaction with the wetland. Newly formed aggregates were carried out to the estuary with the ebb tide. These results indicate that the Browns Island wetland (and presumably other similar wetlands throughout the San Francisco Bay-Delta) plays an important role in estuarine biogeochemistry and particle cycling because flocculated particles have higher settling velocities and optical properties than their component particles and will behave differently. The implications of these findings are relevant to several tidal wetland management concerns such as the maintenance of marsh elevation, the cycling and transport of contaminants, and water clarity.

Real-Time GPS Monitoring for Earthquake Rapid Assessment in the San Francisco Bay Area

Science.gov (United States)

Guillemot, C.; Langbein, J. O.; Murray, J. R.

2012-12-01

The U.S. Geological Survey Earthquake Science Center has deployed a network of eight real-time Global Positioning System (GPS) stations in the San Francisco Bay area and is implementing software applications to continuously evaluate the status of the deformation within the network. Real-time monitoring of the station positions is expected to provide valuable information for rapidly estimating source parameters should a large earthquake occur in the San Francisco Bay area. Because earthquake response applications require robust data access, as a first step we have developed a suite of web-based applications which are now routinely used to monitor the network's operational status and data streaming performance. The web tools provide continuously updated displays of important telemetry parameters such as data latency and receive rates, as well as source voltage and temperature information within each instrument enclosure. Automated software on the backend uses the streaming performance data to mitigate the impact of outages, radio interference and bandwidth congestion on deformation monitoring operations. A separate set of software applications manages the recovery of lost data due to faulty communication links. Displacement estimates are computed in real-time for various combinations of USGS, Plate Boundary Observatory (PBO) and Bay Area Regional Deformation (BARD) network stations. We are currently comparing results from two software packages (one commercial and one open-source) used to process 1-Hz data on the fly and produce estimates of differential positions. The continuous monitoring of telemetry makes it possible to tune the network to minimize the impact of transient interruptions of the data flow, from one or more stations, on the estimated positions. Ongoing work is focused on using data streaming performance history to optimize the quality of the position, reduce drift and outliers by switching to the best set of stations within the network, and

Enhanced Preliminary Assessment Report: Presidio of San Francisco Military Reservation, San Francisco, California

Science.gov (United States)

1989-11-01

CAD981415656 Filmore Steiner Bay San Francisco 24 PG&E Gas Plant SanFran 502-IG CAD981415714 Bay North Point Buchanan Laguna 25 PG&E Gas Plant SanFran 502-1H...76-ioV /5,JO /0.7 /,230 PSF Water PSF, Main U.N. Lagunda Honda Analvte Plant Clearwell Reservoir Plaza Reservoi- Chlordane inetab. ə.2 ə.2 (1.2 ə.2

Early Holocene estuary development of the Hesselø Bay area, southern Kattegat, Denmark and its implication for Ancylus Lake drainage

Science.gov (United States)

Bendixen, Carina; Boldreel, Lars Ole; Jensen, Jørn Bo; Bennike, Ole; Hübscher, Christian; Clausen, Ole Rønø

2017-12-01

High-resolution shallow seismic data, sediment core information, radiocarbon dating and sequence stratigraphy have been used to interpret the late glacial to early Holocene geological evolution of Hesselø Bay in the southern Kattegat, Denmark. A reconstruction of the early Holocene coastal environment and a description of coastal processes associated with a river outlet into the bay are presented. Weichselian glacial deposits form the lowermost interpreted unit, covered by late glacial (LG) and postglacial (PG, Holocene) sediments. A funnel-shaped estuary existed at the mouth of channels in the period 10.3-9.2 cal. ka BP; the channels drained water from south to north. The early PG is characterised by estuarine and coastal deposits. The early Holocene bars that developed in the estuary are preserved as morphological features on the present-day seabed, possibly as a result of rapid relative sea-level rise. The estuary existed simultaneously with the occurrence and drainage of the Ancylus Lake. The drainage of this lake occurred through the Dana River (palaeo-Great Belt channel) into the southern Kattegat and then into the study area. The level of the Ancylus Lake in the Baltic Sea region dropped significantly at about 10.2 cal. ka BP at the same time as the estuary developed in the Kattegat region. One outcome of the present study is an enhanced understanding of the Ancylus Lake drainage path. No evidence of major erosion is seen, which indicates non-catastrophic continuous water flow from the south without major drainage events of the Ancylus Lake to the southern Kattegat. During the Littorina transgression, coastal estuarine conditions characterized the Hesselø Bay area where elongated ridges formed a bar system. As the Littorina transgression continued, back-stepping of the bar system and coastline occurred. When the transgression breached the Great Belt threshold, flooding caused major erosion throughout the study area.

Review of wastewater problems and wastewater-management planning in the San Francisco Bay region, California

Science.gov (United States)

Hines, Walter G.

1973-01-01

The San Francisco Bay region has suffered adverse environmental effects related to the discharge of municipal-, industrial-, and agricultural- wastewater and storm-water runoff. Specific pollutional properties of theses discharges are not well understood in all cases although the toxic materials and aquatic-plant nutrients (biostimulants) found in municipal and industrial waterwater are considered to be a major cause of regional water-quality problems. Other water-quality problems in the region are commonly attributed to pesticides found in agricultural wastewater and potentially pathogenic bacteria in municipal-wastewater discharges and in storm-water runoff. The geographical distribution and magnitude of wastewater discharges in the bay region, particularly those from municipalities and industries, is largely a function of population, economic growth, and urban development. As might be expected, the total volume of wastewater has increased in a trend paralleling this growth and development. More significant, perhaps, is the fact that the total volume parameters such as BOD (biochemical oxygen demand), biostimulant concentrations, and toxicity, has increased despite large expenditures on new and improved municipal- and industrial-wastewater-treatment plants. Also, pollutant loadings from other major source, such as agriculture and storm-water runoff, have increased. At the time of writing (1972), many Federal, State, regional, and local agencies are engaged in a comprehensive wastewater-management-planning effort for the entire bay region. Initial objectives of this planning effort are: (1) the consolidation and coordination of loosely integrated wastewater-management facilities and (2) the elimination of wastewater discharges to ecologically sensitive areas, such as fresh-water streams and shallow extremities of San Francisco Bay. There has been some investigation of potential long-range wastewater-management alternatives based upon disposal in deep water in the

Early Holocene estuary development of the Hesselø Bay area, southern Kattegat, Denmark and its implication for Ancylus Lake drainage

DEFF Research Database (Denmark)

Bendixen, Carina; Boldreel, Lars Ole; Jensen, Jørn Bo

2017-01-01

environment and a description of coastal processes associated with a river outlet into the bay are presented. Weichselian glacial deposits form the lowermost interpreted unit, covered by late glacial (LG) and postglacial (PG, Holocene) sediments. A funnel-shaped estuary existed at the mouth of channels......High-resolution shallow seismic data, sediment core information, radiocarbon dating and sequence stratigraphy have been used to interpret the late glacial to early Holocene geological evolution of Hesselø Bay in the southern Kattegat, Denmark. A reconstruction of the early Holocene coastal...... in the period 10.3–9.2 cal. ka BP; the channels drained water from south to north. The early PG is characterised by estuarine and coastal deposits. The early Holocene bars that developed in the estuary are preserved as morphological features on the present-day seabed, possibly as a result of rapid relative sea...

Integration of bed characteristics, geochemical tracers, current measurements, and numerical modeling for assessing the provenance of beach sand in the San Francisco Bay Coastal System

Science.gov (United States)

Barnard, Patrick L.; Foxgrover, Amy C.; Elias, Edwin P.L.; Erikson, Li H.; Hein, James R.; McGann, Mary; Mizell, Kira; Rosenbauer, Robert J.; Swarzenski, Peter W.; Takesue, Renee K.; Wong, Florence L.; Woodrow, Donald L.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

Over 150 million m3 of sand-sized sediment has disappeared from the central region of the San Francisco Bay Coastal System during the last half century. This enormous loss may reflect numerous anthropogenic influences, such as watershed damming, bay-fill development, aggregate mining, and dredging. The reduction in Bay sediment also appears to be linked to a reduction in sediment supply and recent widespread erosion of adjacent beaches, wetlands, and submarine environments. A unique, multi-faceted provenance study was performed to definitively establish the primary sources, sinks, and transport pathways of beach-sized sand in the region, thereby identifying the activities and processes that directly limit supply to the outer coast. This integrative program is based on comprehensive surficial sediment sampling of the San Francisco Bay Coastal System, including the seabed, Bay floor, area beaches, adjacent rock units, and major drainages. Analyses of sample morphometrics and biological composition (e.g., Foraminifera) were then integrated with a suite of tracers including 87Sr/86Sr and 143Nd/144Nd isotopes, rare earth elements, semi-quantitative X-ray diffraction mineralogy, and heavy minerals, and with process-based numerical modeling, in situ current measurements, and bedform asymmetry to robustly determine the provenance of beach-sized sand in the region.

A History of Vegetation, Sediment and Nutrient Dynamics at Tivoli North Bay, Hudson Estuary, New York

Science.gov (United States)

Sritrairat, Sanpisa; Peteet, Dorothy M.; Kenna, Timothy C.; Sambrotto, Ray; Kurdyla, Dorothy; Guilderson, Tom

2012-01-01

We conduct a stratigraphic paleoecological investigation at a Hudson River National Estuarine Research Reserve (HRNERR) site, Tivoli Bays, spanning the past 1100 years. Marsh sediment cores were analyzed for ecosystem changes using multiple proxies, including pollen, spores, macrofossils, charcoal, sediment bulk chemistry, and stable carbon and nitrogen isotopes. The results reveal climatic shifts such as the warm and dry Medieval Warm Period (MWP) followed by the cooler Little Ice Age (LIA), along with significant anthropogenic influence on the watershed ecosystem. A five-fold expansion of invasive species, including Typha angustifolia and Phragmites australis, is documented along with marked changes in sediment composition and nutrient input. During the last century, a ten-fold sedimentation rate increase due to land-use changes is observed. The large magnitude of shifts in vegetation, sedimentation, and nutrients during the last few centuries suggest that human activities have made the greatest impact to the marshes of the Hudson Estuary during the last millennium. Climate variability and ecosystem changes similar to those observed at other marshes in northeastern and mid-Atlantic estuaries, attest to the widespread regional signature recorded at Tivoli Bays.

A hydrogen-oxidizing, Fe(III)-reducing microorganism from the Great Bay estuary, New Hampshire

Science.gov (United States)

Caccavo, F.; Blakemore, R.P.; Lovley, D.R.

1992-01-01

A dissimilatory Fe(III)- and Mn(IV)-reducing bacterium was isolated from bottom sediments of the Great Bay estuary, New Hampshire. The isolate was a facultatively anaerobic gram-negative rod which did not appear to fit into any previously described genus. It was temporarily designated strain BrY. BrY grew anaerobically in a defined medium with hydrogen or lactate as the electron donor and Fe(III) as the electron acceptor. BrY required citrate, fumarate, or malate as a carbon source for growth on H2 and Fe(III). With Fe(III) as the sole electron acceptor, BrY metabolized hydrogen to a minimum threshold at least 60-fold lower than the threshold reported for pure cultures of sulfate reducers. This finding supports the hypothesis that when Fe(III) is available, Fe(III) reducers can outcompete sulfate reducers for electron donors. Lactate was incompletely oxidized to acetate and carbon dioxide with Fe(III) as the electron acceptor. Lactate oxidation was also coupled to the reduction of Mn(IV), U(VI), fumarate, thiosulfate, or trimethylamine n-oxide under anaerobic conditions. BrY provides a model for how enzymatic metal reduction by respiratory metal-reducing microorganisms has the potential to contribute to the mobilization of iron and trace metals and to the immobilization of uranium in sediments of Great Bay Estuary.

Operation of a real-time warning system for debris flows in the San Francisco bay area, California

Science.gov (United States)

Wilson, Raymond C.; Mark, Robert K.; Barbato, Gary; ,

1993-01-01

The United States Geological Survey (USGS) and the National Weather Service (NWS) have developed an operational warning system for debris flows during severe rainstorms in the San Francisco Bay region. The NWS makes quantitative forecasts of precipitation from storm systems approaching the Bay area and coordinates a regional network of radio-telemetered rain gages. The USGS has formulated thresholds for the intensity and duration of rainfall required to initiate debris flows. The first successful public warnings were issued during a severe storm sequence in February 1986. Continued operation of the warning system since 1986 has provided valuable working experience in rainfall forecasting and monitoring, refined rainfall thresholds, and streamlined procedures for issuing public warnings. Advisory statements issued since 1986 are summarized.

Long-term morphologic evolution of the Hangzhou Bay, China

Science.gov (United States)

Wen, W.; Zhijun, D.; Hualiang, X.

2013-12-01

Estuaries are the most productive ecosystems of coastal zones in the world, which are significant to mankind as places of navigation, recreation and commerce as well as extensive and diverse habitats for wildlife. However, most estuary environments in the world had occurred greatly changes in recent decades. These estuaries have suffered from impacts of forcing factors including wave climate, mean sea level change and storm surge, especial to the intensive human activities such as training wall construction, channel dredging, sand mining and dam constructions. Thus, there have been increasing concerns about estuary environment changes under effects of different factors. Riverine loads into the Changjiang Estuary have declined dramatically with the construction of Three Gorges Dam (TGD) in 2003. The morphological evolution of the Hangzhou bay that located the southern proximity of the Yangtze estuary starts to attract increasing attentions due to most material of the Hangzhou bay received from Yangtze estuary. In this paper, historical bathymetric charts were digitized and analyzed within a GIS to provide quantitative estimate of changes in volumes in different regions below 0 m elevation. The results show that Hangzhou bay has experienced a major loss in estuarine volume of about 15% with annual mean sediment deposition rate of 80 million m3/a during the last 75 years. However, there is a large-scale spatial adjustment in Hangzhou bay: Bathymetric changes of the Hangzhou bay can be rapidly shifted within the range of 8-10 classes. Volume of the Jinshanzui upstream of the Hangzhou bay has obviously decreased in the last 75 years, especially during 2003-2008. However, Volume of the southern Hangzhou bay has experienced slowly decrease with minor deposition. The northern Hangzhou bay had largely volume changes with rapidly decrease during 1931-1981, and drastically increase since 2003. Further analysis of the bathymetric data relating to possible factors indicates

Collection and analysis of remotely sensed data from the Rhode River Estuary Watershed. [ecological parameters of Chesapeake Bay

Science.gov (United States)

Jenkins, D. W.

1972-01-01

NASA chose the watershed of Rhode River, a small sub-estuary of the Bay, as a representative test area for intensive studies of remote sensing, the results of which could be extrapolated to other estuarine watersheds around the Bay. A broad program of ecological research was already underway within the watershed, conducted by the Smithsonian Institution's Chesapeake Bay Center for Environmental Studies (CBCES) and cooperating universities. This research program offered a unique opportunity to explore potential applications for remote sensing techniques. This led to a joint NASA-CBCES project with two basic objectives: to evaluate remote sensing data for the interpretation of ecological parameters, and to provide essential data for ongoing research at the CBCES. A third objective, dependent upon realization of the first two, was to extrapolate photointerpretive expertise gained at the Rhode River watershed to other portions of the Chesapeake Bay.

Acid Volatile Sulfides (avs) and the Bioavailability of Trace Metals in the Channel of the SÃO Francisco River, Sepetiba Bay - de Janeiro-Brazil

Science.gov (United States)

Monte, Christiane; Rodrigues, Ana Paula; Marinho, Matheus; Quaresma, Tássia; Machado, Wilson

2014-05-01

Sepetiba Bay has 430 Km2 of internal and 2,500 Km2 area of the drainage basin (Lacerda et al., 2007), located 60 km west of the city of Rio de Janeiro. Sepetiba Bay has 430 Km2 of internal and 2,500 Km2 area of the drainage basin (Lacerda et al., 2007), located 60 km west of the city of Rio de Janeiro.The San Francisco channel comes from the Guandu River and empties into Sepetiba Bay and is the main contributor of freshwater to the estuarine system. The Guandu River system/channel of San Francisco receives contribution of domestic and industrial effluents, which go largely to Sepetiba Bay. This work aimed to evaluate the .This work aimed to evaluate the ratio SEM/AVS as a way of predicting bioavailability trace metals from industrial sewage, mainly, in the estuarine system of Sepetiba. This model is based on the property of some Divalent metal cations (Cd, Cu, Ni, Pb and Zn), by presenting a low solubility constant, are removed from the soluble fraction by precipitation, forming secondary metal sulfides. Were held four transects, made up of three points each, the coast line to the center of the Bay. The surface sediment was collected with a van Veen sampler type ,packed in glass jars and kept frozen until analysis.The determination of SEM/AVS followed the methodology described by Allen et al. (1991). The variation between sulfide 159.88 ± 0.05 µmol/g on 12 points. The metals that entered the sum of simultaneous extraction were: Cd, Cu, Ni, Pb and Zn ranging from: 6.47 ± 0.11 µmol/g on sum.The means (± standard deviation) ratio SEM/AVS per transect were: 1.04 ± 1.20 (transect 1); 0.48 ± 0.53 (transect 2); 1.26 ± 1.32 (transect 3) and 0.18 ± 0.14 (transect 4). Only transects 1 and 3 had higher results than 1 , meaning that there are more divalent metal sulfides in the environment. This means that only the sulfides would not be capable of complex and may reflect the potential bioavailability of these in the aquatic environment. There is no statistical

The Aquatic Trophic Ecology of Suisun Marsh, San Francisco Estuary, California, During Autumn in a Wet Year

Directory of Open Access Journals (Sweden)

Robert E. Schroeter

2015-09-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.v13iss3art6Using stable isotopes of carbon (δ13C and nitrogen (δ15N and mixing models, we investigated the trophic levels and carbon sources of invertebrates and fishes of a large tidal marsh in the San Francisco Estuary. Our goal was to better understand an estuarine food web comprised of native and alien species. We found the following: (1 the food web was based largely on carbon from phytoplankton and emergent-aquatic and terrestrial vegetation, but carbon from submerged aquatic vegetation and phytobenthos was also used; (2 alien species increased the complexity of the food web by altering carbon-flow pathways and by occupying trophic positions different from native species; and (3 most consumers were dietary generalists.

Local Estuary Programs

Science.gov (United States)

This page provides information about Local Individual Estuary Programs including links to their NEP homepages, social media, Comprehensive Conservation and Management Plans, and state of the bay reports.

Effects of local geological conditions in the San Francisco Bay region on ground motions and the intensities of the 1906 earthquake

International Nuclear Information System (INIS)

Borcherdt, R.D.; Gibbs, J.F.

1976-01-01

Measurements of ground motion generated by nuclear explosions in Nevada have been completed for 99 locations in the San Francisco Bay region, California. The recordings show marked amplitude variations in the frequency band 0.25 to 3.0 Hz that are consistently related to the local geological conditions of the recording site. The average spectral amplifications observed for vertical and horizontal ground motions are, respectively: (1,1) for granite, (1.5, 1.6) for the Franciscan Formation, (3.0, 2.7) for the Santa Clara Formation, (3.3, 4.4) for alluvium, and (3.7, 11.3) for bay mud. Spectral amplification curves define predominant ground frequencies in the band 0.25 to 3.0 H for bay mud sites and for some alluvial sites. Amplitude spectra computed from recordings of seismic background noise at 50 sites do not generally define predominant ground frequencies. The intensities ascribed to various sites in the San Francisco Bay region for the California earthquake of April 18, 1906, are strongly dependent on distance from the zone of surface faulting and the geological character of the ground. Considering only those sites (approximately one square city block in size) for which there is good evidence for the degree of ascribed intensity, the intensities for 917 sites on Franciscan rocks generally decrease with the logarithm of distance as Intensity = 2.69 -- 1.90 log (Distance in kilometers). For sites on other geological units, intensity increments, derived from this empirical relation, correlate strongly with the Average Horizontal Spectral Amplifications (AHSA) according to the empirical relation Intensity Increment = 0.27 + 2.70 log (AHSA). Average intensity increments predicted for the various geological units are --0.3 for granite, 0.2 for the Franciscan Formation, 0.6 for the Great Valley sequence, 0.8 for the Santa Clara Formation, 1.3 for alluvium, and 2.4 for bay mud

Effects of local geological conditions in the San Francisco Bay region on ground motions and the intensities of the 1906 earthquake

Energy Technology Data Exchange (ETDEWEB)

Borcherdt, R.D.; Gibbs, J.F.

1976-04-01

Measurements of ground motion generated by nuclear explosions in Nevada have been completed for 99 locations in the San Francisco Bay region, California. The recordings show marked amplitude variations in the frequency band 0.25 to 3.0 Hz that are consistently related to the local geological conditions of the recording site. The average spectral amplifications observed for vertical and horizontal ground motions are, respectively: (1,1) for granite, (1.5, 1.6) for the Franciscan Formation, (3.0, 2.7) for the Santa Clara Formation, (3.3, 4.4) for alluvium, and (3.7, 11.3) for bay mud. Spectral amplification curves define predominant ground frequencies in the band 0.25 to 3.0 H for bay mud sites and for some alluvial sites. Amplitude spectra computed from recordings of seismic background noise at 50 sites do not generally define predominant ground frequencies. The intensities ascribed to various sites in the San Francisco Bay region for the California earthquake of April 18, 1906, are strongly dependent on distance from the zone of surface faulting and the geological character of the ground. Considering only those sites (approximately one square city block in size) for which there is good evidence for the degree of ascribed intensity, the intensities for 917 sites on Franciscan rocks generally decrease with the logarithm of distance as Intensity = 2.69 -- 1.90 log (Distance in kilometers). For sites on other geological units, intensity increments, derived from this empirical relation, correlate strongly with the Average Horizontal Spectral Amplifications (AHSA) according to the empirical relation Intensity Increment = 0.27 + 2.70 log (AHSA). Average intensity increments predicted for the various geological units are --0.3 for granite, 0.2 for the Franciscan Formation, 0.6 for the Great Valley sequence, 0.8 for the Santa Clara Formation, 1.3 for alluvium, and 2.4 for bay mud.

Seasonal and interannual variability of mesozooplankton in two contrasting estuaries of the Bay of Biscay: Relationship to environmental factors

Science.gov (United States)

Villate, Fernando; Iriarte, Arantza; Uriarte, Ibon; Sanchez, Iraide

2017-12-01

Seasonal and interannual variations of total mesozooplankton abundance and community variability were assessed for the period 1998-2005 at 3 salinity sites (35, 33 and 30) of the estuaries of Bilbao and Urdaibai (southeast Bay of Biscay). Spatial differences in mesozooplankton seasonality were recognized, both within and between estuaries, related to differences between sites in hydrodynamic features and anthropogenic nutrient enrichment that drive phytoplankton biomass seasonal cycles. The within estuary seasonal differences in mesozooplankton community were mainly shown through seaward time-advances in the seasonal peak from summer to spring along the salinity gradient, linked to differences in phytoplankton availability during the summer, in turn, related to nutrient availability. These differences were most marked in the estuary of Urdaibai, where zooplankton seasonal pattern at 35 salinity (high tidal flushing) resembled that of shelf waters, while at 35 of the estuary of Bilbao zooplankton showed an estuarine seasonal pattern due to the influence of the estuarine plume. Cirripede larvae contributed most to the mesozooplankton seasonal variability, except at the outer estuary of Bilbao, where cladocerans and fish eggs and larvae were the major contributors, and the inner estuary of Urdaibai, where gastropod larvae contributed most. Total mesozooplankton increased at 30 salinity of the estuary of Bilbao and 35 salinity of the estuary of Urdaibai. Interannual variability of mesozooplankton at the lowest salinity of the estuary of Bilbao was mainly accounted for by copepods due to the introduction of non-indigenous species during estuarine rehabilitation from intense pollution. However, bivalve larvae and gastropod larvae showed the highest contributions at 35 salinity of the estuary of Urdaibai. At the rest of sites, the opposite interannual trends of polychaete larvae and hydromedusae generally made the highest contribution.

Mercury dynamics in a San Francisco estuary tidal wetland: assessing dynamics using in situ measurements

Science.gov (United States)

Bergamaschi, Brian A.; Fleck, Jacob A.; Downing, Bryan D.; Boss, Emmanuel; Pellerin, Brian A.; Ganju, Neil K.; Schoellhamer, David H.; Byington, Amy A.; Heim, Wesley A.; Stephenson, Mark; Fujii, Roger

2012-01-01

We used high-resolution in situ measurements of turbidity and fluorescent dissolved organic matter (FDOM) to quantitatively estimate the tidally driven exchange of mercury (Hg) between the waters of the San Francisco estuary and Browns Island, a tidal wetland. Turbidity and FDOM—representative of particle-associated and filter-passing Hg, respectively—together predicted 94 % of the observed variability in measured total mercury concentration in unfiltered water samples (UTHg) collected during a single tidal cycle in spring, fall, and winter, 2005–2006. Continuous in situ turbidity and FDOM data spanning at least a full spring-neap period were used to generate UTHg concentration time series using this relationship, and then combined with water discharge measurements to calculate Hg fluxes in each season. Wetlands are generally considered to be sinks for sediment and associated mercury. However, during the three periods of monitoring, Browns Island wetland did not appreciably accumulate Hg. Instead, gradual tidally driven export of UTHg from the wetland offset the large episodic on-island fluxes associated with high wind events. Exports were highest during large spring tides, when ebbing waters relatively enriched in FDOM, dissolved organic carbon (DOC), and filter-passing mercury drained from the marsh into the open waters of the estuary. On-island flux of UTHg, which was largely particle-associated, was highest during strong winds coincident with flood tides. Our results demonstrate that processes driving UTHg fluxes in tidal wetlands encompass both the dissolved and particulate phases and multiple timescales, necessitating longer term monitoring to adequately quantify fluxes.

Phytoplankton growth balanced by clam and zooplankton grazing and net transport into the low-salinity zone of the San Francisco Estuary

Science.gov (United States)

Kimmerer, Wim J.; Thompson, Janet K.

2014-01-01

We estimated the influence of planktonic and benthic grazing on phytoplankton in the strongly tidal, river-dominated northern San Francisco Estuary using data from an intensive study of the low salinity foodweb in 2006–2008 supplemented with long-term monitoring data. A drop in chlorophyll concentration in 1987 had previously been linked to grazing by the introduced clam Potamocorbula amurensis, but numerous changes in the estuary may be linked to the continued low chlorophyll. We asked whether phytoplankton continued to be suppressed by grazing and what proportion of the grazing was by benthic bivalves. A mass balance of phytoplankton biomass included estimates of primary production and grazing by microzooplankton, mesozooplankton, and clams. Grazing persistently exceeded net phytoplankton growth especially for larger cells, and grazing by microzooplankton often exceeded that by clams. A subsidy of phytoplankton from other regions roughly balanced the excess of grazing over growth. Thus, the influence of bivalve grazing on phytoplankton biomass can be understood only in the context of limits on phytoplankton growth, total grazing, and transport.

77 FR 60897 - Safety Zone: America's Cup World Series Finish-Line, San Francisco, CA

Science.gov (United States)

2012-10-05

... navigable waters of the San Francisco Bay in vicinity of San Francisco West Yacht Harbor Light 2... vicinity of San Francisco West Yacht Harbor Light 2. Unauthorized persons or vessels are prohibited from... San Francisco West Yacht Harbor Light 2. This safety zone establishes a temporary restricted area on...

Evolution of Two Urbanized Estuaries: Environmental Change, Legal Framework, and Implications for Sea-Level Rise Vulnerability

Directory of Open Access Journals (Sweden)

Pedro J. Pinto

2016-11-01

Full Text Available The San Francisco Bay (CA, USA and the Tagus Estuary (Lisbon, Portugal share striking similarities in terms of morphology and urban development. A finer analysis of development patterns reveals crucial differences in the extent of shoreline alteration and types of land use that now encroach upon natural estuarine habitat. Through historical map analysis and prior stratigraphic and historical research, we reconstruct in GIS environment the evolution of both estuaries over the last millennia and the relative distribution of different classes of land cover. We also discuss the legal frameworks that accompanied this evolution, and how they have influenced the process of wetland reclamation and landfilling. We compared the legal history and synchronous patterns of development by compiling historical mapping information and resorting to GIS analysis to explore spatial patterns over time. This method was useful in isolating events and decisions that were unique to each of the case studies. The Tagus Estuary has experienced disruption of natural environments for over two millennia. Yet, the State has been able to keep estuarine lowlands under public control, even if vast areas have been transformed into farmland. Public control could allow wetland migration with rising seas and restoration efforts. The San Francisco Bay was affected by several decades of elevated sediment loads in the 19th century, which induced rapid wetland expansion, but virtual cutoff of sediment supply by dams in the 20th century now impairs their ability to accrete. Meanwhile, tidal wetlands were subject to extremely fast and poorly regulated development. Artificially filled and/or drained wetlands were transferred to local governments and private landowners, in violation of the Public Trust Doctrine. The transformation of wetlands into salt ponds, industrial zones and even residential neighborhoods created extensive developed areas at or below sea level, which are vulnerable to

Urban Greening Bay Area

Science.gov (United States)

Information about the San Francisco Bay Water Quality Project (SFBWQP) Urban Greening Bay Area, a large-scale effort to re-envision urban landscapes to include green infrastructure (GI) making communities more livable and reducing stormwater runoff.

Problems and pressures, management and measures in a site of marine conservation importance: Carmarthen Bay and Estuaries

Science.gov (United States)

Bullimore, Blaise

2014-10-01

Management of anthropogenic activities that cause pressure on estuarine wildlife and biodiversity is beset by a wide range of challenges. Some, such as the differing environmental and socio-economic objectives and conflicting views and priorities, are common to many estuaries; others are site specific. The Carmarthen Bay and Estuaries European Marine Site encompasses four estuaries of European wildlife and conservation importance and considerable socio-economic value. The estuaries and their wildlife are subject to a range of pressures and threats and the statutory authorities responsible for management in and adjacent to the Site have developed a management scheme to address these. Preparation of the management scheme included an assessment of human activities known to occur in and adjacent to the Site for their potential to cause a threat to the designated habitats and species features, and identified actions the management authorities need to take to minimise or eliminate pressures and threats. To deliver the scheme the partner authorities need to accept the requirement for management actions and work together to achieve them. The Welsh Government also needs to work with these authorities because it is responsible for management of many of the most important pressure-causing activities. However, the absence of statutory obligations for partnership working has proved an impediment to successful management.

Modeling Diel Oxygen Dynamics and Ecosystem Metabolism in a Shallow, Eutrophic Estuary

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Weeks Bay is a shallow eutrophic estuary that exhibits frequent summertime diel-cycling hypoxia and periods of dissolved oxygen (DO) oversaturation during the day. Diel DO dynamics in shallow estuaries like Weeks Bay are complex, and may be influenced by wind forcing, vertical an...

EFFECTS OF SALINITY ACCLIMATION ON THE ENDOCRINE DISRUPTION AND ACUTE TOXICITY OF BIFENTHRIN IN FRESHWATER AND EURYHALINE STRAINS OF ONCORHYNCHUS MYKISS

OpenAIRE

Riar, Navneet; Crago, Jordan; Jiang, Weiying; Maryoung, Lindley A.; Gan, Jay; Schlenk, Daniel

2013-01-01

The pyrethroid insecticide bifenthrin is frequently detected at ng/L concentrations in tributaries of the San Francisco Bay Delta. The estuary is also experiencing increasing salinity through climate change and water redirection. To evaluate the impacts of hypersaline conditions on bifenthrin toxicity in anadromous salmonids of the San Francisco Bay Delta (CA, USA), a 14-d laboratory exposure was performed using 2 strains of Oncorhynchus mykiss (rainbow trout and steelhead) acclimated to fres...

Leven estuary project. Fisheries Department final report

OpenAIRE

Bayliss, B.D.

1997-01-01

This is the report on the Leven estuary project: Fisheries Department final report produced by the Environment Agency North West in 1997. This report contains information about Leven estuary, river Leven catchment, river Crake catchment and the Ulverston Discharges. The Leven estuary is characterised by being very shallow, and shares the extremely variable tides and currents that characterize the whole of Morecambe Bay. There was little detailed knowledge of the impact on the Leven estuary, a...

Monitoring the Northern San Francisco Bay Water Quality with Landsat-8. Nicholas B. Tufillaroa , and Curtiss O. Davisa. aOregon State University, Corvallis, OR, 97331, USA, nbt@coas.oregonstate.edu

Science.gov (United States)

Davis, C. O.; Tufillaro, N.

2016-02-01

Landsat-8's high spatial resolution ( 30 nm nominal), improved signal-to-noise (12bit digitizer) and expanded band set open up new applications for coastal and in-land waters. We use a recent ocean color processor for Landsat-8 created by Vanhellemont and Ruddick (RSE, 2015)to examine changes in the Northern San Francisco Bay, in particular looking for possiblechanges due to the on-going California drought. For instance, a temporary drought barrier to prevent salt water intrusion was placed during May of 2015 at West False River in the Sacramento-San Joaquin Delta. Using the new Landsat-8 ocean color products, we illustrate how to monitor changes in macro algae and plants (Sago pondweed (native), Curly pondweed (non-native)) in regions directly effected,such as the Franks Track region. Product maps using panchromatic enhancement ( 15 m resolution) andscene based atmospheric correction allow a detailed synoptic look every 16 days during theSpring, Summer, and Fall of 2015. This work is part of a larger NASA funded project aimed atimproving the modeling and predictive capabilities of the biogeochemical state for the San Francisco Bay(Davis, PI: Impacts of Population Growth on the San Francisco Bay and Delta Ecosystem, 2014-2017).

USGS Tampa Bay Pilot Study

Science.gov (United States)

Yates, K.K.; Cronin, T. M.; Crane, M.; Hansen, M.; Nayeghandi, A.; Swarzenski, P.; Edgar, T.; Brooks, G.R.; Suthard, B.; Hine, A.; Locker, S.; Willard, D.A.; Hastings, D.; Flower, B.; Hollander, D.; Larson, R.A.; Smith, K.

2007-01-01

Many of the nation's estuaries have been environmentally stressed since the turn of the 20th century and will continue to be impacted in the future. Tampa Bay, one the Gulf of Mexico's largest estuaries, exemplifies the threats that our estuaries face (EPA Report 2001, Tampa Bay Estuary Program-Comprehensive Conservation and Management Plan (TBEP-CCMP)). More than 2 million people live in the Tampa Bay watershed, and the population constitutes to grow. Demand for freshwater resources, conversion of undeveloped areas to resident and industrial uses, increases in storm-water runoff, and increased air pollution from urban and industrial sources are some of the known human activities that impact Tampa Bay. Beginning on 2001, additional anthropogenic modifications began in Tampa Bat including construction of an underwater gas pipeline and a desalinization plant, expansion of existing ports, and increased freshwater withdrawal from three major tributaries to the bay. In January of 2001, the Tampa Bay Estuary Program (TBEP) and its partners identifies a critical need for participation from the U.S. Geological Survey (USGS) in providing multidisciplinary expertise and a regional-scale, integrated science approach to address complex scientific research issue and critical scientific information gaps that are necessary for continued restoration and preservation of Tampa Bay. Tampa Bay stakeholders identified several critical science gaps for which USGS expertise was needed (Yates et al. 2001). These critical science gaps fall under four topical categories (or system components): 1) water and sediment quality, 2) hydrodynamics, 3) geology and geomorphology, and 4) ecosystem structure and function. Scientists and resource managers participating in Tampa Bay studies recognize that it is no longer sufficient to simply examine each of these estuarine system components individually, Rather, the interrelation among system components must be understood to develop conceptual and

A Place to Call Home: A Synthesis of Delta Smelt Habitat in the Upper San Francisco Estuary

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Ted Sommer

2013-06-01

Full Text Available We used a combination of published literature and field survey data to synthesize the available information about habitat use by delta smelt Hypomesus transpacificus, a declining native species in the San Francisco Estuary. Delta smelt habitat ranges from San Pablo and Suisun bays to their freshwater tributaries, including the Sacramento and San Joaquin rivers. In recent years, substantial numbers of delta smelt have colonized habitat in Liberty Island, a north Delta area that flooded in 1997. The species has a more upstream distribution during spawning as opposed to juvenile rearing periods. Post-larvae and juveniles tend to have a more downstream distribution during wetter years. Delta smelt are most common in low-salinity habitat (<6 psu with high turbidities (>12 NTU and moderate temperatures (7 °C to 25 °C. They do not appear to have strong substrate preferences, but sandy shoals are important for spawning in other osmerids. The evidence to date suggests that they generally require at least some tidal flow in their habitats. Delta smelt also occur in a wide range of channel sizes, although they seem to be rarer in small channels (<15 m wide. Nonetheless, there is some evidence that open water adjacent to habitats with long water-residence times (e.g. tidal marsh, shoal, low-order channels may be favorable. Other desirable features of delta smelt habitat include high calanoid copepod densities and low levels of submerged aquatic vegetation (SAV and the toxic algae Microcystis. Although enough is known to plan for large-scale pilot habitat projects, these efforts are vulnerable to several factors, most notably climate change, which will change salinity regimes and increase the occurrence of lethal temperatures. We recommend restoration of multiple geographical regions and habitats coupled with extensive monitoring and adaptive management. An overall emphasis on ecosystem processes rather than specific habitat features is also likely to be

Potential Climate-Induced Runoff Changes and Associated Uncertainty in Four Pacific Northwest Estuaries

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As part of a larger investigation into potential impacts of climate change on estuarine habitats in the Pacific Northwest (PNW), we estimated changes in freshwater inputs into four estuaries. These were the Coquille River estuary, the South Slough of Coos Bay, and the Yaquina Bay...

Impacts of an underwater high voltage DC power cable on fish migration movements in the San Francisco Bay.

Science.gov (United States)

Wyman, M. T.; Kavet, R.; Klimley, A. P.

2016-02-01

There is an increasingly strong interest on a global scale in offshore renewable energy production and transportation. However, there is concern that the electromagnetic fields (EMF) produced by these underwater cables may alter the behavior and physiology of marine species. Despite this concern, few studies have investigated these effects in free-living species. In 2009, a 85 km long high-voltage DC (HVDC) power cable was placed within the San Francisco Bay, running parallel, then perpendicular to, the migration route of anadromous species moving from the inland river system to the oceans. In this study, we assess the impacts of this HVDC cable on the migration behaviors of EMF-sensitive fish, including juvenile salmonids (Chinook salmon, Oncorhynchus tshawytscha, and steelhead trout, Oncorhynchus mykiss) and adult green sturgeon, Acipenser medirostris. Acoustic telemetry techniques were used to track fish migration movements through the San Francisco Bay both before and after the cable was activated; individuals implanted with acoustic transmitters were detected on cross-channel hydrophone arrays at key locations in the system. Magnetic fields were surveyed and mapped at these locations using a transverse gradiometer, and models of the cable's magnetic field were developed that closely matched the empirically measured values. Here, we present our analyses on the relationships between migration-related behavioral metrics (e.g., percent of successful migrations, duration of migration, time spent near vs. far from cable location, etc.) and environmental parameters, such as cable activation and load level, local magnetic field levels, depth, and currents.

San Francisco Bay nutrients and plankton dynamics as simulated by a coupled hydrodynamic-ecosystem model

Science.gov (United States)

Liu, Qianqian; Chai, Fei; Dugdale, Richard; Chao, Yi; Xue, Huijie; Rao, Shivanesh; Wilkerson, Frances; Farrara, John; Zhang, Hongchun; Wang, Zhengui; Zhang, Yinglong

2018-06-01

An open source coupled physical-biogeochemical model is developed for San Francisco Bay (SFB) to study nutrient cycling and plankton dynamics as well as to assist ecosystem based management and risk assessment. The biogeochemical model in this study is based on the Carbon, Silicate and Nitrogen Ecosystem (CoSiNE) model, and coupled to the unstructured grid, Semi-Implicit Cross-scale Hydroscience Integrated System Model (SCHISM). The SCHISM-CoSiNE model reproduces the spatial and temporal variability in nutrients and plankton biomass, and its physical and biogeochemical performance is successfully tested using comparisons with shipboard and fixed station observations. The biogeochemical characteristics of the SFB during wet and dry years are investigated by changing the input of the major rivers. River discharges from the Sacramento and San Joaquin Rivers affect the phytoplankton biomass in North SFB through both advection and dilution of nutrient (including ammonium, NH4) concentrations in the river. The reduction in residence time caused by increased inflows can result in decreased biomass accumulation, while the corresponding reduction in NH4 concentration favors the growth of biomass. In addition, the model is used to make a series of sensitivity experiments to examine the response of SFB to changes in 1) nutrient loading from rivers and wastewater treatment plants (WWTPs), 2) a parameter (ψ) defining NH4 inhibition of nitrate (NO3) uptake by phytoplankton, 3) bottom grazing and 4) suspended sediment concentration. The model results show that changes in NH4 input from rivers or WWTPs affect the likelihood of phytoplankton blooms via NH4 inhibition and that the choice of ψ is critical. Bottom grazing simulated here as increased plankton mortality demonstrates the potential for bivalve reduction of chlorophyll biomass and the need to include bivalve grazing in future models. Furthermore, the model demonstrates the need to include sediments and their contribution

Predator removal and nesting waterbird success at San Francisco Bay, California

Science.gov (United States)

Meckstroth, A.M.; Miles, A.K.

2005-01-01

The efficacy of long-term predator removal in urbanized areas is poorly understood. The impact of predation on ground-nesting waterbirds, as well as predator abundance and composition in predator removal versus non-removal or reference sites were examined at South San Francisco Bay. The success of natural nests and predator activity was monitored using track plates, trip cameras, wire haircatchers and simulated nests. Removal sites had higher nest densities, but lower hatching success than reference sites. Predator composition and abundance were not different at the removal and reference sites for any predator other than feral Cat (Felis domesticus). Striped Skunk (Mephitis mephitis) comprised the majority (84%) of predators removed, yet remained the most abundant predators in removal and reference sites. Urban environments provide supplemental food that may influence skunks and other nest predators to immigrate into vacancies created by predator removal. Based on the findings from this study, predator removal should be applied intensively over a larger geographic area in order to be a viable management strategy for some mammalian species in urbanized areas.

Distribution and pollution assessment of heavy metals in surface sediments in Xiaoqing river estuary and its adjacent sea of Laizhou bay

Science.gov (United States)

Wang, Li; Luo, Xianxiang; Fan, Yuqing

2018-03-01

In this paper, the monitoring results of four heavy metals Cu, Pb, Zn and Hg at 10 sampling stations in Xiaoqing river estuary and its adjacent sea of Laizhou Bay in November 2008 were analyzed and evaluated. The results showed that the concentrations of heavy metals in the steam channel and estuary are higher than those in the adjacent sea, and the metal concentrations were below the standard for I class of marine sediment quality, excepting the station 2 in the steam channel and station 5 in the estuary. The assessment of the single-factor pollution index showed that the overall pollution level of the study area was relatively low, but there was serious pollution phenomenon in individual station. The potential ecological risk of heavy metals in the surface sediments was generally at a low level, and Hg had the highest potential risk.

Polychlorinated biphenyls in the exterior caulk of San Francisco Bay Area buildings, California, USA.

Science.gov (United States)

Klosterhaus, Susan; McKee, Lester J; Yee, Donald; Kass, Jamie M; Wong, Adam

2014-05-01

Extensive evidence of the adverse impacts of polychlorinated biphenyls (PCBs) to wildlife, domestic animals, and humans has now been documented for over 40 years. Despite the ban on production and new use of PCBs in the United States in 1979, a number of fish consumption advisories remain in effect, and there remains considerable uncertainty regarding ongoing environmental sources and management alternatives. Using a blind sampling approach, 25 caulk samples were collected from the exterior of ten buildings in the San Francisco Bay Area and analyzed for PCBs using congener-specific gas chromatography-mass spectrometry (GC-MS) and chlorine using portable X-ray fluorescence (XRF). PCBs were detected in 88% of the caulk samples collected from the study area buildings, with 40% exceeding 50 ppm. Detectable PCB concentrations ranged from 1 to 220,000 ppm. These data are consistent with previous studies in other cities that have identified relatively high concentrations of PCBs in concrete and masonry buildings built between 1950 and 1980. Portable XRF was not a good predictor of the PCB content in caulk and the results indicate that portable XRF analysis may only be useful for identifying caulk that contains low concentrations of Cl (≤ 10,000 ppm) and by extension low or no PCBs. A geographic information system-based approach was used to estimate that 10,500 kg of PCBs remain in interior and exterior caulk in buildings located in the study area, which equates to an average of 4.7 kg PCBs per building. The presence of high concentrations in the exterior caulk of currently standing buildings suggests that building caulk may be an ongoing source of PCBs to the San Francisco Bay Area environment. Further studies to expand the currently small international dataset on PCBs in caulking materials in buildings of countries that produced or imported PCBs appear justified in the context of both human health and possible ongoing environmental release. Copyright © 2014 Elsevier

Trends and habitat associations of waterbirds using the South Bay Salt Pond Restoration Project, San Francisco Bay, California

Science.gov (United States)

De La Cruz, Susan E. W.; Smith, Lacy M.; Moskal, Stacy M.; Strong, Cheryl; Krause, John; Wang, Yiwei; Takekawa, John Y.

2018-04-02

Executive SummaryThe aim of the South Bay Salt Pond Restoration Project (hereinafter “Project”) is to restore 50–90 percent of former salt evaporation ponds to tidal marsh in San Francisco Bay (SFB). However, hundreds of thousands of waterbirds use these ponds over winter and during fall and spring migration. To ensure that existing waterbird populations are supported while tidal marsh is restored in the Project area, managers plan to enhance the habitat suitability of ponds by adding islands and berms to change pond topography, manipulating water salinity and depth, and selecting appropriate ponds to maintain for birds. To help inform these actions, we used 13 years of monthly (October–April) bird abundance data from Project ponds to (1) assess trends in waterbird abundance since the inception of the Project, and (2) evaluate which pond habitat characteristics were associated with highest abundances of different avian guilds and species. For comparison, we also evaluated waterbird abundance trends in active salt production ponds using 10 years of monthly survey data.We assessed bird guild and species abundance trends through time, and created separate trend curves for Project and salt production ponds using data from every pond that was counted in a year. We divided abundance data into three seasons—fall (October–November), winter (December–February), and spring (March–April). We used the resulting curves to assess which periods had the highest bird abundance and to identify increasing or decreasing trends for each guild and species.

The HayWired Scenario - How Can the San Francisco Bay Region Bounce Back Better?

Science.gov (United States)

Hudnut, K. W.; Wein, A. M.; Cox, D. A.; Perry, S. C.; Porter, K.; Johnson, L. A.; Strauss, J. A.

2017-12-01

The HayWired scenario is a hypothetical yet scientifically realistic and quantitative depiction of a moment magnitude (Mw) 7.0 earthquake occurring on April 18, 2018, at 4:18 p.m. on the Hayward Fault in the east bay part of the San Francisco Bay area, California. The hypothetical earthquake has its epicenter in Oakland, and strong ground shaking from the scenario causes a wide range of severe impacts throughout the greater bay region. In the scenario, the Hayward Fault is ruptured along its length for 83 kilometers (about 52 miles). Building on a decades-long series of efforts to reduce earthquake risk in the SF Bay area, the hypothetical HayWired earthquake is used to examine the well-known earthquake hazard of the Hayward Fault, with a focus on newly emerging vulnerabilities. After a major earthquake disaster, reestablishing water services and food-supply chains are, of course, top priorities. However, problems associated with telecommunication outages or "network congestion" will increase and become more urgent as the bay region deepens its reliance on the "Internet of Things." Communications at all levels are crucial during incident response following an earthquake. Damage to critical facilities (such as power plants) from earthquake shaking and to electrical and telecommunications wires and fiber-optic cables that are severed where they cross a fault rupture can trigger cascading Internet and telecommunications outages, and restoring these services is crucially important for emergency-response coordination. Without good communications, emergency-response efficiency is reduced, and as a result, life-saving response functions can be compromised. For these reasons, the name HayWired was chosen for this scenario to emphasize the need to examine our interconnectedness and reliance on telecommunications and other lifelines (such as water and electricity). Earthquake risk in the SF Bay area has been greatly reduced as a result of previous concerted efforts; for

Fish and Salinity in the San Francisco Estuary

Science.gov (United States)

This page provides access to a set of time-series maps for six fishes that live in the SF Estuary. Maps were produced to strengthen best available science that inform actions needed to improve protection for aquatic life.

Use of geochemical biomarkers in bottom sediment to track oil from a spill, San Francisco Bay, California

Science.gov (United States)

Hostettler, F.D.; Rapp, J.B.; Kvenvolden, K.A.

1992-01-01

In April 1988, approximately 1500 m3 of a San Joaquin Valley crude oil were accidentally released from a Shell Oil Co. refinery near Martinez, Californa. The oil flowed into Carquinez Strait and Suisun Bay in northern San Francisco Bay Sediment and oil samples were collected within a week and analysed for geochemical marker compounds in order to track the molecular signature of the oil spill in the bottom sediment. Identification of the spilled oil in the sediment was complicated by the degraded nature of the oil and the similarity of the remaining, chromatographically resolvable constituents to those already present in the sediments from anthropogenic petroleum contamination, pyrogenic sources, and urban drainage. Ratios of hopane and sterane biomarkers, and of polycyclic aromatic hydrocarbons and their alkylated derivatives best identified the oil impingement. They showed the oil impact at this early stage to be surficial only, and to be patchy even within an area of heavy oil exposure.

Discharge between San Antonio Bay and Aransas Bay, southern Gulf Coast, Texas, May-September 1999

Science.gov (United States)

East, Jeffery W.

2001-01-01

Along the Gulf Coast of Texas, many estuaries and bays are important habitat and nurseries for aquatic life. San Antonio Bay and Aransas Bay, located about 50 and 30 miles northeast, respectively, of Corpus Christi, are two important estuarine nurseries on the southern Gulf Coast of Texas (fig. 1). According to the Texas Parks and Wildlife Department, “Almost 80 percent of the seagrasses [along the Texas Gulf Coast] are located in the Laguna Madre, an estuary that begins just south of Corpus Christi Bay and runs southward 140 miles to South Padre Island. Most of the remaining seagrasses, about 45,000 acres, are located in the heavily traveled San Antonio, Aransas and Corpus Christi Bay areas” (Shook, 2000).Population growth has led to greater demands on water supplies in Texas. The Texas Water Development Board, the Texas Parks and Wildlife Department, and the Texas Natural Resource Conservation Commission have the cooperative task of determining inflows required to maintain the ecological health of the State’s streams, rivers, bays, and estuaries. To determine these inflow requirements, the three agencies collect data and conduct studies on the need for instream flows and freshwater/ saline water inflows to Texas estuaries.To assist in the determination of freshwater inflow requirements, the U.S. Geological Survey (USGS), in cooperation with the Texas Water Development Board, conducted a hydrographic survey of discharge (flow) between San Antonio Bay and Aransas Bay during the period May–September 1999. Automated instrumentation and acoustic technology were used to maximize the amount and quality of data that were collected, while minimizing personnel requirements. This report documents the discharge measured at two sites between the bays during May–September 1999 and describes the influences of meteorologic (wind and tidal) and hydrologic (freshwater inflow) conditions on discharge between the two bays. The movement of water between the bays is

Radioanalytical assessment of sedimentation rates in Guajara Bay (Amazon Estuary, N Brazil). A study with unsupported 210Pb and 137Cs modeling

International Nuclear Information System (INIS)

Patricia Andrade Neves; Paulo Alves de Lima Ferreira; Marcia Caruso Bicego; Rubens Cesar Lopes Figueira

2014-01-01

Guajara Bay is an integral part of the Amazon Estuary system, and functions as the main receiver of urban and industrial wastes from the city of Belem, capital city of PA State (N Brazil). There is a lack of knowledge regarding quantitative measures of sedimentation, such as sedimentation rates, in the literature for this area of the Amazon Estuary. This study aimed the evaluation of recent (time range of 100 years) sedimentation rates in three sediment profiles collected in the coastal system of Guajara Bay with a radioanalytical approach of unsupported 210 Pb and 137 Cs modeling. The mean sedimentation rates for the cores obtained were 0.85 ± 0.12 cm year -1 for Anadim core, 1.02 ± 0.17 cm year -1 for Outeiro core and 0.53 ± 0.04 cm year -1 for Tucunduba core. With the use of three models of sedimentation rate models, it was observed that Anadim and Outeiro core presented constant sedimentation rates for the evaluated time range, but Tucunduba did not. This difference in sedimentation rates was probably due to their different sampling locations that present diverse hydrodynamic regime, with deposition of fine sediments in the upper area of the bay and stronger fluvial currents in the southernmost region. (author)

Breast cancer characteristics of Vietnamese women in the Greater San Francisco Bay Area.

Science.gov (United States)

Lin, Scarlett S; Phan, John C; Lin, Albert Y

2002-03-01

To examine breast cancer characteristics of women of Vietnamese ancestry living in the San Francisco Bay Area in comparison with those of other racial or ethnic groups in the same area. Data were obtained from the population-based Greater Bay Area Cancer Registry, part of the Surveillance, Epidemiology, and End Results program. We included breast cancer cases diagnosed from 1988 to 1999 and compared the age at diagnosis, stage and histologic grade at diagnosis, estrogen- and progesterone-receptor status, and surgery types across racial or ethnic groups. We also modeled the effect of patient and clinical characteristics and hospital and physician on the racial or ethnic variations in surgery type. Vietnamese women were younger at diagnosis than other racial or ethnic subgroups (mean age, 51.0 years), with 49.6% of the diagnoses occurring in patients younger than 50. They were also significantly more likely to have received mastectomy for their in situ and localized tumors (61.1% having mastectomy) than women of other racial or ethnic groups. The increased likelihood of having mastectomy among Vietnamese women was not affected greatly by age, year of diagnosis, tumor stage, histologic grade, or physician, but was partly attributable to the hospital of diagnosis. The effects of a lower mean age at diagnosis and the reasons for an unexpectedly higher percentage of mastectomies in this Asian subgroup should be further explored.

Microbial Community Structure in Relation to Water Quality in a Eutrophic Gulf of Mexico Estuary

Science.gov (United States)

Weeks Bay is a shallow, microtidal, eutrophic sub-estuary of Mobile Bay, AL. High watershed nutrient inputs to the estuary contribute to a eutrophic condition characterized by frequent summertime diel-cycling hypoxia and dissolved oxygen (DO) oversaturation. Spatial and seasonal ...

Understanding the Occurrence and Transport of Current-use Pesticides in the San Francisco Estuary Watershed

Directory of Open Access Journals (Sweden)

Kathryn Kuivila

2008-10-01

Full Text Available The occurrence and potential effects of current-use pesticides are of concern in the San Francisco Estuary watershed but our understanding of the spatial and temporal distribution of contamination is limited. This paper summarizes almost two decades of historical data and uses it to describe our current knowledge of the processes controlling the occurrence of current-use pesticides in the watershed. Monitoring studies analyze fewer than half of the pesticides applied in the watershed and most of our knowledge is about inputs of dissolved pesticides in the upper watershed. The four major seasonal patterns of riverine inputs of pesticides to the estuary can be identified by usage and transport mechanism. Dormant spray insecticides applied to orchards and herbicides applied to a variety of crops are transported by rainfall during the winter. Alfalfa pesticides are detected following rainfall and irrigation return flow in the spring, and rice pesticides are detected following release of rice field water in the summer. Irrigation return flows transport a variety of herbicides during the summer. In addition, pesticides applied on Delta islands can cause elevated pesticide concentrations in localized areas. Although not as well characterized, urban creeks appear to have their own patterns of insecticide concentrations causing toxicity throughout most of the year. Current-use pesticides have also been detected on suspended and bed sediments throughout the watershed but limited data make it difficult to determine occurrence patterns. Data gaps include the lack of analysis of many pesticides (or degradates, changing pesticide use, limited information on pesticide transport within the Delta, and an incomplete understanding of the transport and persistence of sediment-associated pesticides. Future monitoring programs should be designed to address these data gaps.

Superstorm Sandy-related Morphologic and Sedimentologic Changes in an Estuarine System: Barnegat Bay-Little Egg Harbor Estuary, New Jersey

Science.gov (United States)

Miselis, J. L.; Ganju, N. K.; Navoy, A.; Nicholson, R.; Andrews, B.

2013-12-01

Despite the well-recognized ecological importance of back-barrier estuaries, the role of storms in their geomorphic evolution is poorly understood. Moreover, the focus of storm impact assessments is often the ocean shorelines of barrier islands rather than the exchange of sediment from barrier to estuary. In order to better understand and ultimately predict short-term morphologic and sedimentologic changes in coastal systems, a comprehensive research approach is required but is often difficult to achieve given the diversity of data required. An opportunity to use such an approach in assessing the storm-response of a barrier-estuary system occurred when Superstorm Sandy made landfall near Atlantic City, New Jersey on 29 October 2012. Since 2011, the US Geological Survey has been investigating water circulation and water-quality degradation in Barnegat Bay-Little Egg Harbor (BBLEH) Estuary, the southern end of which is approximately 25 kilometers north of the landfall location. This effort includes shallow-water geophysical surveys to map the bathymetry and sediment distribution within BBLEH, airborne topo-bathymetric lidar surveys for mapping the shallow shoals that border the estuary, and sediment sampling, all of which have provided a recent picture of the pre-storm estuarine geomorphology. We combined these pre-storm data with similar post-storm data from the estuary and pre- and post-storm topographic data from the ocean shoreline of the barrier island to begin to understand the response of the barrier-estuary system. Breaches in the barrier island resulted in water exchange between the estuary and the ocean, briefly reducing residence times in the northern part of the estuary until the breaches were closed. Few morphologic changes in water depths greater than 1.5 m were noted. However, morphologic changes observed in shallower depths along the eastern shoreline of the estuary are likely related to overwash processes. In general, surficial estuarine sediments

Population biology and distribution of the portunid crab Callinectes ornatus (Decapoda: Brachyura in an estuary-bay complex of southern Brazil

Directory of Open Access Journals (Sweden)

Timoteo T. Watanabe

2014-08-01

Full Text Available Trawl fisheries are associated with catches of swimming crabs, which are an important economic resource for commercial as well for small-scale fisheries. This study evaluated the population biology and distribution of the swimming crab Callinectes ornatus (Ordway, 1863 in the Estuary-Bay of São Vicente, state of São Paulo, Brazil. Crabs were collected from a shrimp fishing boat equipped with a semi-balloon otter-trawl net, on eight transects (four in the estuary and four in the bay from March 2007 through February 2008. Specimens caught were identified, sexed and measured. Samples of bottom water were collected and the temperature and salinity measured. A total of 618 crabs were captured (332 males, 267 females and 19 ovigerous females, with a sex ratio close to 1:1. A large number of juveniles were captured (77.67%. Crab spatial distributions were positively correlated with salinity (Rs = 0.73, p = 0.0395 and temperature (Rs = 0.71, p = 0.0092. Two peaks of recruitment occurred, in summer and autumn, and ovigerous females were mostly captured during summer, showing a seasonal reproductive pattern. The results showed that C. ornatus uses the bay as a nursery area for juvenile development. Callinectes ornatus is not yet a legally protected species, and the minimum allowed size of crabs caught in the area, although already restricted, should be carefully evaluated since the removal of large numbers of juveniles could negatively impact the local population.

Radionuclides in intertidal sands and sediments from Morecambe Bay to the Dee estuary

International Nuclear Information System (INIS)

Carpenter, R.C.; Burton, P.J.; Strange, L.P.; Pratley, F.W.

1991-05-01

Surface and core samples of intertidal sediments have been collected from the coastline from Morecambe Bay to the Dee Estuary. The sampling took place between October 1987 and July 1989. Caesium-137 was determined by high resolution gamma spectrometry and plutonium isotopes and americium-241 were determined by alpha spectrometry following radiochemical separations. Samples were also sieved to obtain a particle size distribution of the deposits. A wide range of radionuclide activities have been determined depending on the distance from Sellafield and, more importantly, the proportion of clay plus silt ( 239+240 Pu and 241 Am activity discharged by Sellafield up to the end of 1988. The measured activities generally represent a small fraction of the Generalised Derived Limits (GDL's) for marine sediments. (author)

Data from theodolite measurements of creep rates on San Francisco Bay region faults, California, 1979-2012

Science.gov (United States)

McFarland, Forrest S.; Lienkaemper, James J.; Caskey, S. John

2009-01-01

Our purpose is to annually update our creep-data archive on San Francisco Bay region active faults for use by the scientific research community. Earlier data (1979-2001) were reported in Galehouse (2002) and were analyzed and described in detail in a summary report (Galehouse and Lienkaemper, 2003). A complete analysis of our earlier results obtained on the Hayward Fault was presented in Lienkaemper, Galehouse and Simpson (2001) and updated in Lienkaemper and others (2012). Lienkaemper and others (2014a) provide a new overview and analysis of fault creep along all sections of the northern San Andreas Fault system, from which they estimate by how much fault creep reduces the seismic hazard for each fault section.

Pollution induced tidal variability in water quality of Mahim Estuary

Digital Repository Service at National Institute of Oceanography (India)

Zingde, M.D.; Sabnis, M.M.

Variability of water quality due to release of wastewater in Mahim Estuary (Maharashtra, India) and associated nearshore waters is discussed. The mixing of low salinity contaminated estuary water with high salinity bay water was considerably...

Colored dissolved organic matter in shallow estuaries: relationships between carbon sources and light attenuation

Science.gov (United States)

Oestreich, W. K.; Ganju, N. K.; Pohlman, J. W.; Suttles, S. E.

2016-02-01

Light availability is of primary importance to the ecological function of shallow estuaries. For example, benthic primary production by submerged aquatic vegetation is contingent upon light penetration to the seabed. A major component that attenuates light in estuaries is colored dissolved organic matter (CDOM). CDOM is often measured via a proxy, fluorescing dissolved organic matter (fDOM), due to the ease of in situ fDOM sensor measurements. Fluorescence must be converted to CDOM absorbance for use in light attenuation calculations. However, this CDOM-fDOM relationship varies among and within estuaries. We quantified the variability in this relationship within three estuaries along the mid-Atlantic margin of the eastern United States: West Falmouth Harbor (MA), Barnegat Bay (NJ), and Chincoteague Bay (MD/VA). Land use surrounding these estuaries ranges from urban to developed, with varying sources of nutrients and organic matter. Measurements of fDOM (excitation and emission wavelengths of 365 nm (±5 nm) and 460 nm (±40 nm), respectively) and CDOM absorbance were taken along a terrestrial-to-marine gradient in all three estuaries. The ratio of the absorption coefficient at 340 nm (m-1) to fDOM (QSU) was higher in West Falmouth Harbor (1.22) than in Barnegat Bay (0.22) and Chincoteague Bay (0.17). The CDOM : fDOM absorption ratio was variable between sites within West Falmouth Harbor and Barnegat Bay, but consistent between sites within Chincoteague Bay. Stable carbon isotope analysis for constraining the source of dissolved organic matter (DOM) in West Falmouth Harbor and Barnegat Bay yielded δ13C values ranging from -19.7 to -26.1 ‰ and -20.8 to -26.7 ‰, respectively. Concentration and stable carbon isotope mixing models of DOC (dissolved organic carbon) indicate a contribution of 13C-enriched DOC in the estuaries. The most likely source of 13C-enriched DOC for the systems we investigated is Spartina cordgrass. Comparison of DOC source to CDOM : f

DNA Barcoding of Ichthyoplankton in Hampton Roads Bay Estuary

Science.gov (United States)

Wilkins, N.; Rodríguez, Á. E.

2016-02-01

Zooplankton is composed of animals that drift within the water column. The study of zooplankton biodiversity and distribution is crucial to understand oceanic ecosystems and anticipate the effects of climate change. In this study our focus is on ichthyoplankton (fish eggs and larvae). Our aim is to employ molecular genetic techniques such as DNA barcoding to begin a detailed characterization of ichthyoplankton diversity, abundance and community structure in the Hampton Roads Bay Estuary (HRBE). A sampling of zooplankton was performed on June 19, 2015. Samples were taken with a 0.5m, 200 µm mesh net in triplicates at two stations: inner shore in the mouth of Jones Creek and 5 miles off Hampton in the lower part of Chesapeake Bay. Physical parameters (dissolved oxygen, salinity, and temperature and water transparency) were measured simultaneously. Species were identified by DNA barcoding using the mitochondrial DNA (mtDNA) of the Cytochrome Oxidase 1 (CO1) gene. Fish eggs were identified from Opistonema oglinum (Atlantic Thread Herring) at the offshore stations while, Anchoa mitchilli was found at both stations. These species are common to the area and as observed, differences in species between stations were found. O. oglinum eggs were found in the offshore stations, which is their reported habitat. A. mitchilli eggs were found in both stations; both known to exhibit a wider salinity tolerance. This work indicates that using mtDNA-CO1 barcoding is suitable to identify ichthyoplankton to the species level and helped validate DNA barcoding as a faster taxonomic approach. The long term objective of this project is to provide taxonomic composition and biodiversity assessment of ichthyoplankton in HRBE. This data will be a reference for broad monitoring programs; for a better understanding and management of ecologically and commercially important species in the HRBE. Monthly samplings will be performed for a year beginning September 2015.

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

Science.gov (United States)

Martyr-Koller, R.C.; Kernkamp, H.W.J.; Van Dam, Anne A.; Mick van der Wegen,; Lucas, Lisa; Knowles, N.; Jaffe, B.; Fregoso, T.A.

2017-01-01

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period.Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

Science.gov (United States)

Martyr-Koller, R. C.; Kernkamp, H. W. J.; van Dam, A.; van der Wegen, M.; Lucas, L. V.; Knowles, N.; Jaffe, B.; Fregoso, T. A.

2017-06-01

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period. Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

Phytoplankton bloom dynamics in coastal ecosystems: A review with some general lessons from sustained investigation of San Francisco Bay, California

Science.gov (United States)

Cloern, James E.

1996-05-01

Phytoplankton blooms are prominent features of biological variability in shallow coastal ecosystems such as estuaries, lagoons, bays, and tidal rivers. Long-term observation and research in San Francisco Bay illustrates some patterns of phytoplankton spatial and temporal variability and the underlying mechanisms of this variability. Blooms are events of rapid production and accumulation of phytoplankton biomass that are usually responses to changing physical forcings originating in the coastal ocean (e.g., tides), the atmosphere (wind), or on the land surface (precipitation and river runoff). These physical forcings have different timescales of variability, so algal blooms can be short-term episodic events, recurrent seasonal phenomena, or rare events associated with exceptional climatic or hydrologic conditions. The biogeochemical role of phytoplankton primary production is to transform and incorporate reactive inorganic elements into organic forms, and these transformations are rapid and lead to measurable geochemical change during blooms. Examples include the depletion of inorganic nutrients (N, P, Si), supersaturation of oxygen and removal of carbon dioxide, shifts in the isotopic composition of reactive elements (C, N), production of climatically active trace gases (methyl bromide, dimethylsulfide), changes in the chemical form and toxicity of trace metals (As, Cd, Ni, Zn), changes in the biochemical composition and reactivity of the suspended particulate matter, and synthesis of organic matter required for the reproduction and growth of heterotrophs, including bacteria, zooplankton, and benthic consumer animals. Some classes of phytoplankton play special roles in the cycling of elements or synthesis of specific organic molecules, but we have only rudimentary understanding of the forces that select for and promote blooms of these species. Mounting evidence suggests that the natural cycles of bloom variability are being altered on a global scale by human

A stratigraphic model to support remediation of groundwater contamination in the southern San Francisco Bay area

International Nuclear Information System (INIS)

Steinpress, M.G.

1993-01-01

Some early regional studies in the southern San Francisco Bay Area applied the term 'older bay mud' to Wisconsin and older deposits thought to be estuarine in origin. This outdated interpretation has apparently contributed to an expectation of laterally-continuous aquifers and aquitards. In fact, heterogeneous alluvial deposits often create complex hydrogeologic settings that defy simple remedial approaches. A more useful stratigraphic model provides a foundation for conducting site investigations and assessing the feasibility of remediation. A synthesis of recent regional studies and drilling results at one site on the southwest margin of the Bay indicate that the upper quaternary stratigraphy consists of four primary units in the upper 200 feet of sediments (oldest to youngest): (1) Illinoian glacial-age alluvium (an important groundwater source); (2) Sangamon interglacial-age deposits, which include fine-grained alluvial deposits and estuarine deposits equivalent to the Yerba Buena Mud (a regional confining layer); (3) Wisconsin glacial-age alluvial fan and floodplain deposits; and (4) Holocene interglacial-age sediments, which include fine-grained alluvial and estuarine deposits equivalent to the 'younger bay mud'. Remedial investigations generally focus on groundwater contamination in the Wisconsin and Holocene alluvial deposits. Detailed drilling results indicate that narrow sand and gravel channels occur in anastomosing patterns within a Wisconsin to Holocene floodplain sequence dominated by interchannel silts and clays. The identification of these small-scale high-permeability conduits is critical to understanding and predicting contaminant transport on a local scale. Discontinuous site-specific aquitards do not provide competent separation where stacked channels occur and the correlation of aquitards over even small distance is often tenuous at best

The Coastal Dynamics of Heterogeneous Sedimentary Environments: Numerical Modeling of Hydrodynamics and Mass Transport in Estuaries

Science.gov (United States)

2010-08-12

Medina, et al. (2006). "The Prestige oil spill in Cantabria (Bay of Biscay). Part I: Operational forecasting system for quick response, risk assessment...estuaries (Kostoglidis, Pattiaratchi et al. 2005), macrotidal estuaries (Yang, Eisma et al. 2000), and estuaries with fringing mangrove swamps...the Atchafalaya Bay system (Cobb, Keen et al. 2008), and Patos Lagoon, Brazil . The model current fields used in the Papua New Guinea study (Keen, Ko

Analysis of Suspended-Sediment Dynamics in Gulf of Mexico Estuaries Using MODIS/Terra 250-m Imagery

Science.gov (United States)

McCarthy, M. J.; Otis, D. B.; Muller-Karger, F. E.; Mendez-Lazaro, P.; Chen, F. R.

2016-02-01

Suspended sediments in coastal ecosystems reduce light penetration, degrade water quality, and inhibit primary production. In this study, a 15-year Moderate Resolution Imaging Spectroradiometer (MODIS/Terra) turbidity time-series was developed for use in the estuaries of the Gulf of Mexico (GOM). Remote-sensing reflectance (Rrs) at 645 nm and 250-m resolution was validated with in-situ turbidity measurements in these estuaries: Coastal Bend Bays (TX), Galveston Bay (TX), Barataria and Terrebonne Bays (LA), Mobile Bay (AL), Tampa Bay (FL), Sarasota Bay (FL), and Charlotte Harbor (FL). Mean values of turbidity over the time-series ranged from 2.5 NTU to over 10 NTU. Turbidity patterns exhibited seasonal cycles with peak values generally found during spring months, although there is considerable variability in the timing of peak turbidity. Episodes of elevated turbidity ranged from 6 episodes in Galveston Bay to 15 in Mobile Bay. The spatial extent of elevated turbidity within estuaries, frequency and duration of turbidity events, and potential driving factors behind episodes of elevated turbidity were also examined.

Managed nutrient reduction impacts on nutrient concentrations, water clarity, primary production, and hypoxia in a north temperate estuary

Science.gov (United States)

Oviatt, Candace; Smith, Leslie; Krumholz, Jason; Coupland, Catherine; Stoffel, Heather; Keller, Aimee; McManus, M. Conor; Reed, Laura

2017-12-01

Except for the Providence River and side embayments like Greenwich Bay, Narragansett Bay can no longer be considered eutrophic. In summer 2012 managed nitrogen treatment in Narragansett Bay achieved a goal of reducing effluent dissolved inorganic nitrogen inputs by over 50%. Narragansett Bay represents a small northeast US estuary that had been heavily loaded with sewage effluent nutrients since the late 1800s. The input reduction was reflected in standing stock nutrients resulting in a statistically significant 60% reduction in concentration. In the Providence River estuary, total nitrogen decreased from 100 μm to about 40 μm, for example. We tested four environmental changes that might be associated with the nitrogen reduction. System apparent production was significantly decreased by 31% and 45% in the upper and mid Bay. Nutrient reductions resulted in statistically improved water clarity in the mid and upper Bay and in a 34% reduction in summer hypoxia. Nitrogen reduction also reduced the winter spring diatom bloom; winter chlorophyll levels after nutrient reduction have been significantly lower than before the reduction. The impact on the Bay will continue to evolve over the next few years and be a natural experiment for other temperate estuaries that will be experiencing nitrogen reduction. To provide perspective we review factors effecting hypoxia in other estuaries with managed nutrient reduction and conclude that, as in Narragansett Bay, physical factors can be as important as nutrients. On a positive note managed nutrient reduction has mitigated further deterioration in most estuaries.

Isohaline position as a habitat indicator for estuarine populations

Science.gov (United States)

Jassby, Alan D.; Kimmerer, W.J.; Monismith, Stephen G.; Armor, C.; Cloern, James E.; Powell, T.M.; Vedlinski, Timothy J.

1995-01-01

Populations of native and introduced aquatic organisms in the San Francisco Bay/Sacramento-San Joaquin Delta Estuary ("Bay/Delta") have undergone significant declines over the past two decades. Decreasedriver inflow due to drought and increased freshwater diversion have contributed to the decline of atleast some populations. Effective management of the estuary's biological resources requires a sensitive indicatorof the response to freshwater inflow that has ecological significance, can be measured accurately and easily,and could be used as a "policy" variable to set standards for managing freshwater inflow. Positioning of the2% (grams of salt per kilogram of seawater) bottom salinity value along the axis of the estuary was examinedfor this purpose.

From headwaters to coast: Influence of human activities on water quality of the Potomac River Estuary

Science.gov (United States)

Bricker, Suzanne B.; Rice, Karen C.; Bricker, Owen P.

2014-01-01

The natural aging process of Chesapeake Bay and its tributary estuaries has been accelerated by human activities around the shoreline and within the watershed, increasing sediment and nutrient loads delivered to the bay. Riverine nutrients cause algal growth in the bay leading to reductions in light penetration with consequent declines in sea grass growth, smothering of bottom-dwelling organisms, and decreases in bottom-water dissolved oxygen as algal blooms decay. Historically, bay waters were filtered by oysters, but declines in oyster populations from overfishing and disease have led to higher concentrations of fine-sediment particles and phytoplankton in the water column. Assessments of water and biological resource quality in Chesapeake Bay and tributaries, such as the Potomac River, show a continual degraded state. In this paper, we pay tribute to Owen Bricker’s comprehensive, holistic scientific perspective using an approach that examines the connection between watershed and estuary. We evaluated nitrogen inputs from Potomac River headwaters, nutrient-related conditions within the estuary, and considered the use of shellfish aquaculture as an in-the-water nutrient management measure. Data from headwaters, nontidal, and estuarine portions of the Potomac River watershed and estuary were analyzed to examine the contribution from different parts of the watershed to total nitrogen loads to the estuary. An eutrophication model was applied to these data to evaluate eutrophication status and changes since the early 1990s and for comparison to regional and national conditions. A farm-scale aquaculture model was applied and results scaled to the estuary to determine the potential for shellfish (oyster) aquaculture to mediate eutrophication impacts. Results showed that (1) the contribution to nitrogen loads from headwater streams is small (about 2 %) of total inputs to the Potomac River Estuary; (2) eutrophic conditions in the Potomac River Estuary have improved in

Serum biomarkers of polyfluoroalkyl compound exposure in young girls in Greater Cincinnati and the San Francisco Bay Area, USA

International Nuclear Information System (INIS)

Pinney, Susan M.; Biro, Frank M.; Windham, Gayle C.; Herrick, Robert L.; Yaghjyan, Lusine; Calafat, Antonia M.; Succop, Paul; Sucharew, Heidi; Ball, Kathleen M.; Kato, Kayoko

2014-01-01

PFC serum concentrations were measured in 6–8 year-old girls in Greater Cincinnati (GC) (N = 353) and the San Francisco Bay Area (SFBA) (N = 351). PFOA median concentration was lower in the SFBA than GC (5.8 vs. 7.3 ng/mL). In GC, 48/51 girls living in one area had PFOA concentrations above the NHANES 95th percentile for children 12–19 years (8.4 ng/mL), median 22.0 ng/mL. The duration of being breast fed was associated with higher serum PFOA at both sites and with higher PFOS, PFHxS and Me-PFOSA-AcOH concentrations in GC. Correlations of the PFC analytes with each other suggest that a source upriver from GC may have contributed to exposures through drinking water, and water treatment with granular activated carbon filtration resulted in less exposure for SWO girls compared to those in NKY. PFOA has been characterized as a drinking water contaminant, and water treatment systems effective in removing PFCs will reduce body burdens. -- Highlights: • PFC serum concentrations were measured in 6–8 year-old girls. • Study sites in Greater Cincinnati (N = 353) and the San Francisco Bay Area (N = 351). • The duration of being breast fed was associated with higher serum PFOA. • Lower PFOA in girls living in areas with granular activated carbon water treatment. -- Serum concentrations of PFCs in young girls were higher in girls who had been breast fed longer, and lower in girls in areas with granular activated carbon municipal water treatment

Colored dissolved organic matter in shallow estuaries: relationships between carbon sources and light attenuation

Science.gov (United States)

Oestreich, W.K.; Ganju, Neil K.; Pohlman, John; Suttles, Steven E.

2016-01-01

Light availability is of primary importance to the ecological function of shallow estuaries. For example, benthic primary production by submerged aquatic vegetation is contingent upon light penetration to the seabed. A major component that attenuates light in estuaries is colored dissolved organic matter (CDOM). CDOM is often measured via a proxy, fluorescing dissolved organic matter (fDOM), due to the ease of in situ fDOM sensor measurements. Fluorescence must be converted to CDOM absorbance for use in light attenuation calculations. However, this CDOM–fDOM relationship varies among and within estuaries. We quantified the variability in this relationship within three estuaries along the mid-Atlantic margin of the eastern United States: West Falmouth Harbor (MA), Barnegat Bay (NJ), and Chincoteague Bay (MD/VA). Land use surrounding these estuaries ranges from urban to developed, with varying sources of nutrients and organic matter. Measurements of fDOM (excitation and emission wavelengths of 365 nm (±5 nm) and 460 nm (±40 nm), respectively) and CDOM absorbance were taken along a terrestrial-to-marine gradient in all three estuaries. The ratio of the absorption coefficient at 340 nm (m−1) to fDOM (QSU) was higher in West Falmouth Harbor (1.22) than in Barnegat Bay (0.22) and Chincoteague Bay (0.17). The CDOM : fDOM absorption ratio was variable between sites within West Falmouth Harbor and Barnegat Bay, but consistent between sites within Chincoteague Bay. Stable carbon isotope analysis for constraining the source of dissolved organic matter (DOM) in West Falmouth Harbor and Barnegat Bay yielded δ13C values ranging from −19.7 to −26.1 ‰ and −20.8 to −26.7 ‰, respectively. Concentration and stable carbon isotope mixing models of DOC (dissolved organic carbon) indicate a contribution of 13C-enriched DOC in the estuaries. The most likely source of 13C-enriched DOC for the systems we investigated is Spartina cordgrass. Comparison of

Bathymetry and digital elevation models of Coyote Creek and Alviso Slough, South San Francisco Bay, California

Science.gov (United States)

Foxgrover, Amy C.; Finlayson, David P.; Jaffe, Bruce E.; Fregoso, Theresa A.

2012-01-05

In 2010 the U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center completed three cruises to map the bathymetry of the main channel and shallow intertidal mudflats in the southernmost part of south San Francisco Bay. The three surveys were merged to generate comprehensive maps of Coyote Creek (from Calaveras Point east to the railroad bridge) and Alviso Slough (from the bay to the town of Alviso) to establish baseline bathymetry prior to the breaching of levees adjacent to Alviso and Guadalupe Sloughs as part of the South Bay Salt Pond Restoration Project (http://www.southbayrestoration.org). Since 2010 the USGS has conducted twelve additional surveys to monitor bathymetric change in this region as restoration progresses.The bathymetry surveys were conducted using the state-of-the-art research vessel R/V Parke Snavely outfitted with an interferometric sidescan sonar for swath mapping in extremely shallow water. This publication provides high-resolution bathymetric data collected by the USGS. For the 2010 baseline survey we have merged the bathymetry with aerial lidar data that were collected for the USGS during the same time period to create a seamless, high-resolution digital elevation model (DEM) of the study area. The series of bathymetry datasets are provided at 1 m resolution and the 2010 bathymetric/topographic DEM at 2 m resolution. The data are formatted as both X, Y, Z text files and ESRI Arc ASCII files that are accompanied by Federal Geographic Data Committee (FGDC) compliant metadata.

Upriver transport of dissolved substances in an estuary and sub-estuary system of the lower James River, Chesapeake Bay

Science.gov (United States)

Hong, Bo; Shen, Jian; Xu, Hongzhou

2018-01-01

The water exchange between the James River and the Elizabeth River, an estuary and sub-estuary system in the lower Chesapeake Bay, was investigated using a 3D numerical model. The conservative passive tracers were used to represent the dissolved substances (DS) discharged from the Elizabeth River. The approach enabled us to diagnose the underlying physical processes that control the expansion of the DS, which is representative of potential transport of harmful algae blooms, pollutants from the Elizabeth River to the James River without explicitly simulating biological processes. Model simulations with realistic forcings in 2005, together with a series of processoriented numerical experiments, were conducted to explore the correlations of the transport process and external forcing. Model results show that the upriver transport depends highly on the freshwater discharge on a seasonal scale and maximum upriver transport occurs in summer with a mean transport time ranging from 15-30 days. The southerly/easterly wind, low river discharge, and neap tidal condition all act to strengthen the upriver transport. On the other hand, the northerly/westerly wind, river pulse, water level pulse, and spring tidal condition act to inhibit the upriver transport. Tidal flushing plays an important role in transporting the DS during spring tide, which shortens the travel time in the lower James River. The multivariable regression analysis of volume mean subtidal DS concentration in the mesohaline portion of the James River indicates that DS concentration in the upriver area can be explained and well predicted by the physical forcings (r = 0.858, p = 0.00001).

San Francisco Bay Area CHARG: Coastal Hazards Adaptation Resiliency Group, a Multi-Jurisdictional Collaboration to Develop Innovative Regional Solutions to Address Sea Level Rise and Improve Shoreline Resiliency

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Saleh, R.

2017-12-01

For a challenge as complex and far-reaching as sea level rise and improving shoreline resiliency, strong partnerships between scientists, elected officials, decision-makers, and the general public are the only way that effective solutions can be developed. The San Francisco Bay, like many similar sheltered water coastal environments (for example, Galveston Bay, Tampa Bay, or Venetian Lagoon) offers a unique opportunity for multiple jurisdictions to collaborate to address sea level rise on a regional basis. For the San Francisco Bay, significant scientific progress has been made in building a real-time simulation model for riverine and Bay hydrodynamics. Other major scientific initiatives, such as morphology mapping, shoreline mapping, and a sediment budget are also underway. In 2014, leaders from the Bay Area science, engineering, planning, policy, elected, and regulatory communities representing jurisdictions around the Bay joined together to address sea level rise. The group includes people from local, regional, state, and federal agencies and organizations. Together, CHARG (Coastal Hazards Adaptation Resiliency Group) established a collective vision and approach to implementing regional solutions. Decision-makers within many Bay Area jurisdictions are motivated to show demonstrable progress toward addressing sea level rise. However, the cost to implement shoreline resiliency solutions will be very large, and must be founded on strong science.CHARG is now tackling several key technical challenges. One is to develop science-based guidelines for local jurisdictions to determine when a project is local, sub-regional, or regional. Concurrently, several organizations are planning or implementing pilot shoreline resiliency projects and other programs. Many creative regional solutions are possible in a sheltered water environment that simply would not be feasible along the open coast. By definition, these solutions cannot be undertaken by one entity alone. Large

Simulation of ridesourcing using agent-based demand and supply regional models : potential market demand for first-mile transit travel and reduction in vehicle miles traveled in the San Francisco Bay Area.

Science.gov (United States)

2016-01-01

In this study, we use existing modeling tools and data from the San Francisco Bay Area : (California) to understand the potential market demand for a first mile transit access service : and possible reductions in vehicle miles traveled (VMT) (a...

Colored Dissolved Organic Matter in Shallow Estuaries: The Effects of Source and Transport on Light Attenuation and Measurement

Science.gov (United States)

Oestreich, W. K.; Ganju, N. K.; Pohlman, J.; Suttles, S. E.

2014-12-01

Light is of great importance to the health and ecological function of shallow estuaries. Primary production in such estuaries, which is typically dominated by seagrass, is contingent upon light penetration to the deeper part of the estuarine water column. A major component contributing to light attenuation in these systems is colored dissolved organic matter (CDOM). CDOM is most often measured via a proxy, fluorescing dissolved organic matter (fDOM), due to the ease of taking rapid, accurate fDOM measurements. Fluorescence data can then be converted to absorbance by CDOM for use in light attenuation models. However, this fDOM-CDOM conversion has proven to be quite variable between estuaries, and even between sites along a given estuary. We displayed and attempted to explain this variability through the study of three diverse estuaries: West Falmouth Harbor (MA), Barnegat Bay (NJ), and Chincoteague Bay (MD/VA). Land use surrounding these estuaries ranges from wastewater treatment to agricultural operations and residential communities. Measurements of fDOM and absorbance by CDOM (quantified via spectrophotometer measurement of 0.2μm-filtered samples) were taken along a gradient from terrestrial to oceanic end-members. These measurements yielded highly variable fDOM-CDOM relationships between estuaries. The mean ratio of absorption coefficient at 340nm (m-1) to fDOM (QSU) was much higher in West Falmouth Harbor (0.874) than in Barnegat Bay (0.227) and Chincoteague Bay (0.173). This fDOM-CDOM relationship was also observed to be variable between sites within West Falmouth Harbor and Barnegat Bay, but consistent throughout sites along Chincoteague Bay. This variability, both within and between estuaries, is likely due to differing CDOM sources as a result of differences in land use in the areas surrounding these estuaries. Stable carbon isotope analysis of DOC from each site and hydrodynamic model results will be used to differentiate sources and further elucidate the

Potential for Increased Mercury Accumulation in the Estuary Food Web

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Jay A Davis

2003-10-01

Full Text Available Present concentrations of mercury in large portions of San Francisco Bay (Bay, the Sacramento-San Joaquin Delta (Delta, and the Sacramento and San Joaquin rivers are high enough to warrant concern for the health of humans and wildlife. Large scale tidal wetland restoration is currently under consideration as a means of increasing populations of fish species of concern. Tidal wetland restoration activities may lead to increased concentrations of mercury in the estuarine food web and exacerbate the existing mercury problem. This paper evaluates our present ability to predict the local and regional effects of restoration actions on mercury accumulation in aquatic food webs. A sport fish consumption advisory is in place for the Bay, and an advisory is under consideration for the Delta and lower Sacramento and San Joaquin rivers. Mercury concentrations in eggs of several water bird species from the Bay have exceeded the lowest observed effect level. A variety of mercury sources, largely related to historic mercury and gold mining, is present in the watershed and has created a spatially heterogeneous distribution of mercury in the Bay-Delta Estuary. Mercury exists in the environment in a variety of forms and has a complex biogeochemical cycle. The most hazardous form, methylmercury, is produced at a relatively high rate in wetlands and newly flooded aquatic habitats. It is likely that distinct spatial variation on multiple spatial scales exists in net methylmercury production in Bay-Delta tidal wetlands, including variation within each tidal wetland, among tidal wetlands in the same region, and among tidal wetlands in different regions. Understanding this spatial variation and its underlying causes will allow environmental managers to minimize the negative effects of mercury bioaccumulation as a result of restoration activities. Actions needed to reduce the uncertainty associated with this issue include a long term, multifaceted research effort, long

Trace/heavy metal pollution monitoring in estuary and coastal area of Bay of Bengal, Bangladesh and implicated impacts.

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Kibria, Golam; Hossain, Md Maruf; Mallick, Debbrota; Lau, T C; Wu, Rudolf

2016-04-15

Using artificial mussels (AMs), this study reports and compares time-integrated level of eleven trace metals (Cd, Co, Cr, Cu, Fe, Hg, Mn, Ni, Pb, U, Zn) in Karnafuli River estuary and coastal area of the Bay of Bengal, Bangladesh. Through this study, "hot spots" of metal pollution were identified. The results may demonstrate that the Karnafuli Estuary, and adjacent coastal area of Chittagong, Bangladesh are highly polluted by high risk metals (cadmium, chromium, copper, mercury, nickel, lead, uranium). Agricultural, domestic and industrial wastes directly discharged into the waterways have been identified as the main causes of metal pollution in Chittagong, Bangladesh. The high level of metal pollution identified may impact on local water quality, and seafood catch, livelihoods of people and public health resulting from seafood consumption. There is a need for regular monitoring to ascertain that local water quality with respect to metal levels are within acceptable levels to safeguards both environmental health and public health. Copyright © 2016 Elsevier Ltd. All rights reserved.

In-situ measurements of seismic velocities in the San Francisco Bay Region; part III

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Gibbs, James F.; Fumal, Thomas E.; Borcherdt, Roger D.; Roth, Edward F.

1977-01-01

Seismic wave velocities (compressional and shear) are important parameters for estimating the seismic response characteristics of various geologic units when subjected to strong earthquake ground shaking. Seismic velocities of various units often show a strong correlation with the amounts of damage following large earthquakes and have been used as a basis for certain types of seismic zonation studies. In the current program seismic velocities have been measured at 59 locations 1n the San Francisco Bay Region. This report is the third in a series of Open-File Reports and describes the in-situ velocity measurements at locations 35-59. At each location seismic travel times are measured in drill holes, normally at 2.5-m intervals to a depth of 30 m. Geologic logs are determined from drill cuttings, undisturbed (cored) samples, and penetrometer samples. The data provide a detailed comparison of geologic and seismic characteristics and provide parameters for estimating strong earthquake ground motions quantitatively at each of the sites. A major emphasis of this program is to obtain a detailed comparison of geologic and seismic data on a regional scale for use in seismic zonation. There is a variety of geologic and seismic data available in the San Francisco Bay Region for use 1n developing the general zoning techniques which can then be applied to other areas. Shear wave velocities 1n near-surface geologic materials are of especial interest for engineering seismology and seismic zonation studies, yet in general, they are difficult to measure because of contamination by compressional waves. A comparison of various in-situ techniques by Warrick (1974) establishes the reliability of the method utilizing a "horizontal traction" source for sites underlain by bay mud and alluvium. Gibbs, and others (1975a) present data from 12 holes and establishes the reliability of the method for sites underlain by a variety of different rock units and suggest extending the measurements to

Evaluation of Caspian tern (Hydroprogne caspia) and snowy plover (Charadrius alexandrinus nivosus) nesting on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—2016 Annual Report

Science.gov (United States)

Hartman, C. Alex; Ackerman, Joshua T.; Herzog, Mark P.; Strong, Cheryl; Trachtenbarg, David; Shore, Crystal A.

2017-05-08

Executive SummaryIn order to address the 2008/10 and Supplemental 2014 NOAA Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) developed and have begun implementation of Caspian tern (Hydroprogne caspia) management plans. This implementation includes redistribution of the Caspian terns in the Columbia River estuary and the mid-Columbia River region to reduce predation on salmonids listed under the Endangered Species Act. Key elements of the plans include (1) reducing nesting habitat for Caspian terns in the Columbia River estuary and the mid-Columbia River region, and (2) creating or modifying nesting habitat at alternative sites within the Caspian tern breeding range. USACE and Reclamation developed Caspian tern nesting habitat at the U.S. Fish and Wildlife Service Don Edwards San Francisco Bay National Wildlife Refuge (DENWR), California, prior to the 2015 nesting season. Furthermore, to reduce or eliminate potential conflicts between nesting Caspian terns and threatened western snowy plovers (Charadrius alexandrinus nivosus), nesting habitat for snowy plovers also was developed. Seven recently constructed islands within two managed ponds (Ponds A16 and SF2) of DENWR were modified to provide habitat attractive to nesting Caspian terns (5 islands) and snowy plovers (2 islands). These 7 islands were a subset of 46 islands recently constructed in Ponds A16 and SF2 to provide waterbird nesting habitat as part of the South Bay Salt Pond (SBSP) Restoration Project.We used social attraction methods (decoys and electronic call systems) to attract Caspian terns and snowy plovers to these seven modified islands, and conducted surveys between March and September of 2015 and 2016 to evaluate nest numbers, nest density, and productivity. Results from the 2015 nesting season, the first year of the study, indicated that island modifications and social

Stable hydrogen and oxygen isotopes of tap water reveal structure of the San Francisco Bay Area's water system and adjustments during a major drought.

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Tipple, Brett J; Jameel, Yusuf; Chau, Thuan H; Mancuso, Christy J; Bowen, Gabriel J; Dufour, Alexis; Chesson, Lesley A; Ehleringer, James R

2017-08-01

Water availability and sustainability in the Western United States is a major flashpoint among expanding communities, growing industries, and productive agricultural lands. This issue came to a head in 2015 in the State of California, when the State mandated a 25% reduction in urban water use following a multi-year drought that significantly depleted water resources. Water demands and challenges in supplying water are only expected to intensify as climate perturbations, such as the 2012-2015 California Drought, become more common. As a consequence, there is an increased need to understand linkages between urban centers, water transport and usage, and the impacts of climate change on water resources. To assess if stable hydrogen and oxygen isotope ratios could increase the understanding of these relationships within a megalopolis in the Western United States, we collected and analyzed 723 tap waters across the San Francisco Bay Area during seven collection campaigns spanning 21 months during 2013-2015. The San Francisco Bay Area was selected as it has well-characterized water management strategies and the 2012-2105 California Drought dramatically affected its water resources. Consistent with known water management strategies and previously collected isotope data, we found large spatiotemporal variations in the δ 2 H and δ 18 O values of tap waters within the Bay Area. This is indicative of complex water transport systems and varying municipality-scale management decisions. We observed δ 2 H and δ 18 O values of tap water consistent with waters originating from snowmelt from the Sierra Nevada Mountains, local precipitation, ground water, and partially evaporated reservoir sources. A cluster analysis of the isotope data collected in this study grouped waters from 43 static sampling sites that were associated with specific water utility providers within the San Francisco Bay Area and known management practices. Various management responses to the drought, such as

Waterbird egg mercury concentrations in response to wetland restoration in south San Francisco Bay, California

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Ackerman, Joshua T.; Herzog, Mark P.; Hartman, Christopher A.; Watts, Trevor C.; Barr, Jarred R.

2014-01-01

The conversion of 50–90 percent of 15,100 acres of former salt evaporation ponds to tidal marsh habitat in the south San Francisco Bay, California, is planned as part of the South Bay Salt Pond Restoration Project. This large-scale habitat restoration may change the bioavailability of methylmercury. The South Bay already is known to have high methylmercury concentrations, with methylmercury concentrations in several waterbirds species more than known toxicity thresholds where avian reproduction is impaired. In this 2013 study, we continued monitoring bird egg mercury concentrations in response to the restoration of the Pond A8/A7/A5 Complex to a potential tidal marsh in the future. The restoration of the Pond A8/A7/A5 Complex began in autumn 2010, and the Pond A8 Notch was opened 5 feet (one of eight gates) to muted tidal action on June 1, 2011, and then closed in the winter. In autumn 2010, internal levees between Ponds A8, A7, and A5 were breached and water depths were substantially increased by flooding the Pond A8/A7/A5 Complex in February 2011. In June 2012, 15 feet (three of eight gates) of the Pond A8 Notch was opened, and then closed in December 2012. In June 2013, 15 feet of the Pond A8 Notch again was opened, and the Pond A8/A7/A5 Complex was a relatively deep and large pond with muted tidal action in the summer. This report synthesizes waterbird data from the 2013 breeding season, and combines it with our prior study’s data from 2010 and 2011.

Habitat Scale Mapping of Fisheries Ecosystem Service Values in Estuaries

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Timothy G. O'Higgins

2010-12-01

Full Text Available Little is known about the variability of ecosystem service values at spatial scales most relevant to local decision makers. Competing definitions of ecosystem services, the paucity of ecological and economic information, and the lack of standardization in methodology are major obstacles to applying the ecosystem-services approach at the estuary scale. We present a standardized method that combines habitat maps and habitat-faunal associations to estimate ecosystem service values for recreational and commercial fisheries in estuaries. Three case studies in estuaries on the U.S. west coast (Yaquina Bay, Oregon, east coast (Lagoon Pond, Massachusetts, and the Gulf of Mexico (Weeks Bay, Alabama are presented to illustrate our method's rigor and limitations using available data. The resulting spatially explicit maps of fisheries ecosystem service values show within and between estuary variations in the value of estuarine habitat types that can be used to make better informed resource-management decisions.

Suspended-sediment dynamics in the tidal reach of a San Francisco Bay tributary

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Shellenbarger, Gregory; Downing-Kunz, Maureen; Schoellhamer, David H.

2015-01-01

To better understand suspended-sediment transport in a tidal slough adjacent to a large wetland restoration project, we deployed continuously measuring temperature, salinity, depth, turbidity, and velocity sensors in 2010 at a near-bottom location in Alviso Slough (Alviso, California, USA). Alviso Slough is the downstream reach of the Guadalupe River and flows into the far southern end of San Francisco Bay. River flow is influenced by the Mediterranean climate, with high flows (∼90 m3 s−1) correlated to episodic winter storms and low base flow (∼0.85 m3 s−1) during the summer. Storms and associated runoff have a large influence on sediment flux for brief periods, but the annual peak sediment concentrations in the slough, which occur in April and May, are similar to the rest of this part of the bay and are not directly related to peak discharge events. Strong spring tides promote a large upstream sediment flux as a front associated with the passage of a salt wedge during flood tide. Neap tides do not have flood-directed fronts, but a front seen sometimes during ebb tide appears to be associated with the breakdown of stratification in the slough. During neap tides, stratification likely suppresses sediment transport during weaker flood and ebb tides. The slough is flood dominant during spring tides, and ebb dominant during neap tides. Extreme events in landward (salt wedge) and bayward (rainfall events) suspended-sediment flux account for 5.0 % of the total sediment flux in the slough and only 0.55 % of the samples. The remaining 95 % of the total sediment flux is due to tidal transport, with an imbalance in the daily tidal transport producing net landward flux. Overall, net sediment transport during this study was landward indicating that sediment in the sloughs may not be flushed to the bay and are available for sedimentation in the adjacent marshes and ponds.

Using Remotely Sensed Data and Hydrologic Models to Evaluate the Effects of Climate Change on Shallow Aquatic Ecosystems in the Mobile Bay, AL Estuary

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Estes, M. G.; Al-Hamdan, M. Z.; Thom, R.; Judd, C.; Ellis, J.; Woodruff, D.; Quattrochi, D.; Rose, K.; Swann, R.

2012-12-01

Coastal systems in the northern Gulf of Mexico, including the Mobile Bay, AL estuary, are subject to increasing pressure from a variety of activities including climate change. Climate changes have a direct effect on the discharge of rivers that drain into Mobile Bay and adjacent coastal water bodies. The outflows change water quality (temperature, salinity, and sediment concentrations) in the shallow aquatic areas and affect ecosystem functioning. Mobile Bay is a vital ecosystem that provides habitat for many species of fauna and flora. Historically, submerged aquatic vegetation (SAV) and seagrasses were found in this area of the northern Gulf of Mexico; however the extent of vegetation has significantly decreased over the last 60 years. The objectives of this research are to determine: how climate changes affect runoff and water quality in the estuary and how these changes will affect habitat suitability for SAV and seagrasses. Our approach is to use watershed and hydrodynamic modeling to evaluate the impact of climate change on shallow water aquatic ecosystems in Mobile Bay and adjacent coastal areas. Remotely sensed Landsat data were used for current land cover land use (LCLU) model input and the data provided by Intergovernmental Panel on Climate Change (IPCC) of the future changes in temperature, precipitation, and sea level rise were used to create the climate scenarios for the 2025 and 2050 model simulations. Project results are being shared with Gulf coast stakeholders through the Gulf of Mexico Data Atlas to benefit coastal policy and climate change adaptation strategies.

Using Remotely Sensed Data and Hydrologic Models to Evaluate the Effects of Climate Change on Shallow Aquatic Ecosystems in the Mobile Bay, AL Estuary

Science.gov (United States)

Estes, M. G.; Al-Hamdan, M. Z.; Thom, R.; Judd, C.; Woodruff, D.; Ellis, J. T.; Quattrochi, D.; Swann, R.

2012-01-01

Coastal systems in the northern Gulf of Mexico, including the Mobile Bay, AL estuary, are subject to increasing pressure from a variety of activities including climate change. Climate changes have a direct effect on the discharge of rivers that drain into Mobile Bay and adjacent coastal water bodies. The outflows change water quality (temperature, salinity, and sediment concentrations) in the shallow aquatic areas and affect ecosystem functioning. Mobile Bay is a vital ecosystem that provides habitat for many species of fauna and flora. Historically, submerged aquatic vegetation (SAV) and seagrasses were found in this area of the northern Gulf of Mexico; however the extent of vegetation has significantly decreased over the last 60 years. The objectives of this research are to determine: how climate changes affect runoff and water quality in the estuary and how these changes will affect habitat suitability for SAV and seagrasses. Our approach is to use watershed and hydrodynamic modeling to evaluate the impact of climate change on shallow water aquatic ecosystems in Mobile Bay and adjacent coastal areas. Remotely sensed Landsat data were used for current land cover land use (LCLU) model input and the data provided by Intergovernmental Panel on Climate Change (IPCC) of the future changes in temperature, precipitation, and sea level rise were used to create the climate scenarios for the 2025 and 2050 model simulations. Project results are being shared with Gulf coast stakeholders through the Gulf of Mexico Data Atlas to benefit coastal policy and climate change adaptation strategies.

Status and understanding of groundwater quality in the San Francisco Bay groundwater basins, 2007—California GAMA Priority Basin Project

Science.gov (United States)

Parsons, Mary C.; Kulongoski, Justin T.; Belitz, Kenneth

2013-01-01

Groundwater quality in the approximately 620-square-mile (1,600-square-kilometer) San Francisco Bay study unit was investigated as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in the Southern Coast Ranges of California, in San Francisco, San Mateo, Santa Clara, Alameda, and Contra Costa Counties. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA San Francisco Bay study was designed to provide a spatially unbiased assessment of the quality of untreated groundwater within the primary aquifer system, as well as a statistically consistent basis for comparing water quality throughout the State. The assessment is based on water-quality and ancillary data collected by the USGS from 79 wells in 2007 and is supplemented with water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer system is defined by the depth interval of the wells listed in the CDPH database for the San Francisco Bay study unit. The quality of groundwater in shallower or deeper water-bearing zones may differ from that in the primary aquifer system; shallower groundwater may be more vulnerable to surficial contamination. The first component of this study, the status of the current quality of the groundwater resource, was assessed by using data from samples analyzed for volatile organic compounds (VOCs), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. Water- quality data from the CDPH database also were incorporated for this assessment. This status assessment is intended to characterize the quality of groundwater resources within the primary aquifer system of the San Francisco Bay study unit, not the treated drinking water delivered to consumers by water

Estimates of bottom roughness length and bottom shear stress in South San Francisco Bay, California

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Cheng, R.T.; Ling, C.-H.; Gartner, J.W.; Wang, P.-F.

1999-01-01

A field investigation of the hydrodynamics and the resuspension and transport of participate matter in a bottom boundary layer was carried out in South San Francisco Bay (South Bay), California, during March-April 1995. Using broadband acoustic Doppler current profilers, detailed measurements of turbulent mean velocity distribution within 1.5 m above bed have been obtained. A global method of data analysis was used for estimating bottom roughness length zo and bottom shear stress (or friction velocities u*). Field data have been examined by dividing the time series of velocity profiles into 24-hour periods and independently analyzing the velocity profile time series by flooding and ebbing periods. The global method of solution gives consistent properties of bottom roughness length zo and bottom shear stress values (or friction velocities u*) in South Bay. Estimated mean values of zo and u* for flooding and ebbing cycles are different. The differences in mean zo and u* are shown to be caused by tidal current flood-ebb inequality, rather than the flooding or ebbing of tidal currents. The bed shear stress correlates well with a reference velocity; the slope of the correlation defines a drag coefficient. Forty-three days of field data in South Bay show two regimes of zo (and drag coefficient) as a function of a reference velocity. When the mean velocity is >25-30 cm s-1, the ln zo (and thus the drag coefficient) is inversely proportional to the reference velocity. The cause for the reduction of roughness length is hypothesized as sediment erosion due to intensifying tidal currents thereby reducing bed roughness. When the mean velocity is <25-30 cm s-1, the correlation between zo and the reference velocity is less clear. A plausible explanation of scattered values of zo under this condition may be sediment deposition. Measured sediment data were inadequate to support this hypothesis, but the proposed hypothesis warrants further field investigation.

Per- and polyfluoroalkyl substances (PFASs) in San Francisco Bay wildlife: Temporal trends, exposure pathways, and notable presence of precursor compounds.

Science.gov (United States)

Sedlak, Margaret D; Benskin, Jonathan P; Wong, Adam; Grace, Richard; Greig, Denise J

2017-10-01

Concentrations of perfluorooctane sulfonate (PFOS) in San Francisco Bay (SF Bay) wildlife have historically been among the highest reported globally. To track continuing exposures to PFASs and assess the impact of the 2002 phase-out of production of PFOS and related chemicals in the US, nine perfluoroalkyl carboxylic acids (PFCAs; C4-C12), three perfluoroalkyl sulfonic acids (PFSAs; C4, C6, C8) and perfluorooctane sulfonamide (PFOSA, a PFOS precursor) were measured in SF Bay cormorant eggs in 2012 and harbor seal serum sampled between 2009 and 2014. PFOS remained the dominant perfluoroalkyl acid (PFAA) in both cormorant eggs (36.1-466 ng/g) and seals (12.6-796 ng/g) from 2012 and 2014, respectively. Concentrations in seal and bird eggs from the South Bay have declined approximately 70% in both matrices. To elucidate potential pathways of exposure, prey fish, sediments and wastewater effluent were analyzed for PFASs, and in the case of sediment and effluent, a suite of PFAA precursors. PFOS was the dominant PFAA in prey fish and sediment. In effluent, different mixtures of PFAAs were measured, with PFOS, PFHxA, and PFOA detected in the highest concentrations. Polyfluoroalkyl phosphate diesters (PFCA-precursors) were observed at concentrations over an order of magnitude higher than PFCAs in sediment, highlighting their importance as a potential, on-going source of PFCAs to SF Bay wildlife. These findings suggest that the PFOS phase-out has resulted in reduced burdens to wildlife in SF Bay, but that exposure to diverse and incompletely characterized PFASs continues. Copyright © 2017 Elsevier Ltd. All rights reserved.

Management case study: Tampa Bay, Florida

Science.gov (United States)

Morrison, G.; Greening, H.S.; Yates, K.K.

2012-01-01

Tampa Bay, Florida,USA, is a shallow,subtropical estuary that experienced severe cultural eutrophication between the 1940s and 1980s, a period when the human population of its watershed quadrupled. In response, citizen action led to the formation of a public- and private-sector partnership (the Tampa Bay Estuary Program), which adopted a number of management objectives to support the restoration and protection of the bay’s living resources. These included numeric chlorophyll a and water-clarity targets, as well as long-term goals addressing the spatial extent of sea grasses and other selected habitat types, to support estuarine-dependent faunal guilds.

SF Bay Water Quality Improvement Fund: Projects and Accomplishments

Science.gov (United States)

San Francisco Bay Water Quality Improvement Fund (SFBWQIF) projects listed here are part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

Coastal processes study at Ocean Beach, San Francisco, CA: summary of data collection 2004-2006

Science.gov (United States)

Barnard, Patrick L.; Eshleman, Jodi; Erikson, Li H.; Hanes, Daniel M.

2007-01-01

Ocean Beach in San Francisco, California, contains a persistent erosional section in the shadow of the San Francisco ebb tidal delta and south of Sloat Boulevard that threatens valuable public infrastructure as well as the safe recreational use of the beach. Coastal managers have been discussing potential mediation measures for over a decade, with little scientific research available to aid in decision making. The United States Geological Survey (USGS) initiated the Ocean Beach Coastal Processes Study in April 2004 to provide the scientific knowledge necessary for coastal managers to make informed management decisions. This study integrates a wide range of field data collection and numerical modeling techniques to document nearshore sediment transport processes at the mouth of San Francisco Bay, with emphasis on how these processes relate to erosion at Ocean Beach. The Ocean Beach Coastal Processes Study is the first comprehensive study of coastal processes at the mouth of San Francisco Bay.

Invasion by a Japanese marine microorganism in western North America

Science.gov (United States)

McGann, M.; Sloan, D.; Cohen, A.N.

2000-01-01

The earliest record in western North America of Trochammina hadai Uchio, a benthic foraminifer common in Japanese estuaries, is from sediment collected in Puget Sound in 1971. It was first found in San Francisco Bay in sediment samples taken in 1983, and since 1986 has been collected at 91% of the sampled sites in the Bay, constituting up to 93% of the foraminiferal assemblage at individual sites. The species is also present in recent sediment samples from 12 other sites along the west coast of North America. The evidence indicates that T. hadai is a recent introduction to San Francisco Bay, and is probably also not native to the other North American sites. Trochammina hadai was probably transported from Japan in ships' ballast tanks, in mud associated with anchors, or in sediments associated with oysters imported for mariculture. Its remarkable invasion of San Francisco Bay suggests the potential for massive, rapid invasions by other marine microorganisms.

Development of an estuarine assessment scheme for the management of a highly urbanised catchment/estuary system, Sydney estuary, Australia.

Science.gov (United States)

Birch, G F; Gunns, T J; Chapman, D; Harrison, D

2016-05-01

As coastal populations increase, considerable pressures are exerted on estuarine environments. Recently, there has been a trend towards the development and use of estuarine assessment schemes as a decision support tool in the management of these environments. These schemes offer a method by which complex environmental data is converted into a readily understandable and communicable format for informed decision making and effective distribution of limited management resources. Reliability and effectiveness of these schemes are often limited due to a complex assessment framework, poor data management and use of ineffective environmental indicators. The current scheme aims to improve reliability in the reporting of estuarine condition by including a concise assessment framework, employing high-value indicators and, in a unique approach, employing fuzzy logic in indicator evaluation. Using Sydney estuary as a case study, each of the 15 sub-catchment/sub-estuary systems were assessed using the current scheme. Results identified that poor sediment quality was a significant issue in Blackwattle/Rozelle Bay, Iron Cove and Hen and Chicken Bay while poor water quality was of particular concern in Duck River, Homebush Bay and the Parramatta River. Overall results of the assessment scheme were used to prioritise the management of each sub-catchment/sub-estuary assessed with Blackwattle/Rozelle Bay, Homebush Bay, Iron Cove and Duck River considered to be in need of a high priority management response. A report card format, using letter grades, was employed to convey the results of the assessment in a readily understood manner to estuarine managers and members of the public. Letter grades also provide benchmarking and performance monitoring ability, allowing estuarine managers to set improvement targets and assesses the effectiveness of management strategies. The current assessment scheme provides an effective, integrated and consistent assessment of estuarine health and

User's guide to the LIRAQ model: an air pollution model for the San Francisco Bay Area

International Nuclear Information System (INIS)

MacCracken, M.C.

1975-01-01

The Livermore Regional Air Quality (LIRAQ) model comprises a set of computer programs that have been integrated into an easily used tool for the air quality planner. To assemble and modify the necessary data files and to direct model execution, a problem formulation program has been developed that makes possible the setup of a wide variety of studies involving perturbation of the emission inventory, changes to the initial and boundary conditions, and different choices of grid size and problem domain. In addition to describing the types of air quality problems for which the LIRAQ model may be used, this User's Guide provides detailed information on how to set up and conduct model simulations. Also included are descriptions of the formats of input data files so that the LIRAQ model may be applied to regions other than the San Francisco Bay Area

Climate Ready Estuaries Partner Projects Map

Science.gov (United States)

CRE partners with the National Estuary Program to develop climate change projects in coastal U.S. areas, such as bays and harbors; to develop adaptation action plans, identify climate impacts and indicators, and more. This map shows project locations.

CHINESE MITTEN CRABS (ERIOCHEIR SINENSIS) IN THE ST. LAWRENCE RIVER (CANADA): NEW RECORDS AND RISK OF INVASION

Science.gov (United States)

The Chinese mitten crab, Eriocheir sinensis, is an internationally renowned aquatic invader. Native to China and North/South Korea, this catadromous crab has successfully invaded several rivers and estuaries in eleven countries in Western Europe as well as the San Francisco Bay ...

Breast cancer among American Japanese in the San Francisco Bay area.

Science.gov (United States)

Dunn, J E

1977-12-01

The Japanese-American population was particularly well suited for the study of cancer occurrence because: 1) An American-born population as well as the immigrant Japanese-American population could be studied; 2) good cancer incidence and mortality data from Japan could be compared with data from the United States; and 3) some differences in the rate of occurrence of several specific cancer sites in Japan as compared with the United States were striking. The most significant of these involved the gastrointestinal tract and sex organs. Data were presented concerning cancer incidence rates for the Japanese-American population of the San Francisco Bay area. The high gastric rates for the Japanese in Japan were reduced in a stepwise fashion in the immigrant Japanese-American population to the American-born Japanese who were approaching the low rate of the United States. Colon cancer rates, which were low in Japan, approached the rates in the United States in both the immigrants from Japan and in Japanese Americans. The low rates of cancers of the breast, uterine corpus, and ovary of Japanese women in Japan and for prostate cancer among men rapidly approached the higher rates for these cancer sites that existed in the United States. A study of nutritional factors related to the increase of cancer of the breast in Japanese Americans is being conducted.

Fine-Scale Distributions of Zooplankton in the Northern San Francisco Estuary

Directory of Open Access Journals (Sweden)

Wim Kimmerer

2016-10-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2016v14iss3art2 We studied zooplankton distributions in the upper San Francisco Estuary at nested scales of tens to thousands of meters. The purposes of the study were to assess how well the Interagency Ecological Program (IEP zooplankton monitoring represents abundance, and to investigate the variability of plankton on scales similar to those of foraging by fish. Samples were taken at three sites in the western Sacramento–San Joaquin Delta. We took 18 sets of six samples each with a plankton net along transects from near shore to center channel, and six sets of ten samples in the vicinity of a drifter either in mid-channel or near shore. Sampling took place in June–July 2014 during neap and spring tides, ebb and flood, day and night (transects only. Analysis focused on three common copepod species. Transect samples showed little consistent variation along transects, except that Pseudodiaptomus forbesi was less abundant nearshore than offshore by day at Big Break, the most landward site. The ratio of adults to adults + copepodites was strongly and positively related to turbidity by day but not by night, indicating demersal behavior. Drifter samples showed a minimum standard deviation of log10 sample counts of about 0.1, indicating that about two-thirds of replicate abundance values were within 80 % to 125% of the mean. A measure of difference between plankton samples at pairs of sample points was unrelated to distance between sample points for drifter samples, weakly related along transects for Limnoithona spp. stages, and strongly related for P. forbesi mainly because of the along-transect gradients at Big Break. The IEP sampling program is representative of plankton abundance except for demersal organisms, which can be ten-fold more abundant by night than by day. Small planktivorous fish could forage in patches of up to ~25% higher abundance than the mean.

Riders on the storm: selective tidal movements facilitate the spawning migration of threatened delta smelt in the San Francisco Estuary

Science.gov (United States)

Bennett, W.A.; Burau, Jon R.

2015-01-01

Migration strategies in estuarine fishes typically include behavioral adaptations for reducing energetic costs and mortality during travel to optimize reproductive success. The influence of tidal currents and water turbidity on individual movement behavior were investigated during the spawning migration of the threatened delta smelt, Hypomesus transpacificus, in the northern San Francisco Estuary, California, USA. Water current velocities and turbidity levels were measured concurrently with delta smelt occurrence at sites in the lower Sacramento River and San Joaquin River as turbidity increased due to first-flush winter rainstorms in January and December 2010. The presence/absence of fish at the shoal-channel interface and near the shoreline was quantified hourly over complete tidal cycles. Delta smelt were caught consistently at the shoal-channel interface during flood tides and near the shoreline during ebb tides in the turbid Sacramento River, but were rare in the clearer San Joaquin River. The apparent selective tidal movements by delta smelt would facilitate either maintaining position or moving upriver on flood tides, and minimizing advection down-estuary on ebb tides. These movements also may reflect responses to lateral gradients in water turbidity created by temporal lags in tidal velocities between the near-shore and mid-channel habitats. This migration strategy can minimize the energy spent swimming against strong river and tidal currents, as well as predation risks by remaining in turbid water. Selection pressure on individuals to remain in turbid water may underlie population-level observations suggesting that turbidity is a key habitat feature and cue initiating the delta smelt spawning migration.

New fault picture points toward San Francisco Bay area earthquakes

Science.gov (United States)

Kerr, R. A.

1989-01-01

Recent earthquakes and a new way of looking at faults suggest that damaging earthquakes are closing in on the San Francisco area. Earthquakes Awareness Week 1989 in northern California started off with a bang on Monday, 3 April, when a magnitude 4.8 earthquake struck 15 kilometers northeast of San Jose. The relatively small shock-its primary damage was the shattering of an air-control tower window-got the immediate attention of three U.S Geological Survey seismologists in Menlo Park near San Francisco. David Oppenheimer, William Bakun, and Allan Lindh had forecast a nearby earthquake in a just completed report, and this, they thought, might be it. 

Distribution and risk assessment of trace metals in sediments from Yangtze River estuary and Hangzhou Bay, China.

Science.gov (United States)

Li, Feipeng; Mao, Lingchen; Jia, Yubao; Gu, Zhujun; Shi, Weiling; Chen, Ling; Ye, Hua

2018-01-01

The Yangtze River estuary (YRE) and Hangzhou Bay (HZB) is of environmental significance because of the negative impact from industrial activities and rapid development of aquaculture on the south bank of HZB (SHZB) in recent years. This study investigated the distribution and risk assessments of trace metals (Cr, Cu, Zn, Hg, Pb, and Cd) accumulated in surface sediments by sampling in YRE, outer and south HZB. Copper and Zn concentration (avg. 35.4 and 98.7 mg kg -1 , respectively) in surface sediments were generally higher than the background suggesting a widespread of Cu and Zn in the coastal area of Yangtze River Delta. High concentrations of Cu (~ 42 mg kg -1 ), Zn (~ 111 mg kg -1 ), Cd (~ 0.27 mg kg -1 ), and Hg (~ 0.047 mg kg -1 ) were found in inner estuary of YRE and decreased offshore as a result of terrestrial input and dilution effect of total metal contents by "cleaner" sediments from the adjacent sea. In outer HZB, accumulation of terrestrial derived metal has taken place near the Zhoushan Islands. Increase in sediment metal concentration from the west (inner) to the east (outer) of SHZB gave rise to the input of fine-grained sediments contaminated with metals from outer bay. According the results from geoaccumulation index, nearly 75% of samples from YRE were moderately polluted (1.0 < I geo  < 2.0) by Cd. Cadmium and Hg contributed for 80~90% to the potential ecological risk index in the YRE and HZB, with ~ 72% sites in HZB under moderate risk (150 ≤ RI < 300) especially near Zhoushan Islands.

Projected evolution of California's San Francisco bay-delta-river system in a century of climate change

Science.gov (United States)

Cloern, James E.; Knowles, Noah; Brown, Larry R.; Cayan, Daniel R.; Dettinger, Michael D.; Morgan, Tara L.; Schoellhamer, David H.; Stacey, Mark T.; Van der Wegen, Mick; Wagner, R.W.; Jassby, Alan D.

2011-01-01

Background: Accumulating evidence shows that the planet is warming as a response to human emissions of greenhouse gases. Strategies of adaptation to climate change will require quantitative projections of how altered regional patterns of temperature, precipitation and sea level could cascade to provoke local impacts such as modified water supplies, increasing risks of coastal flooding, and growing challenges to sustainability of native species. Methodology/Principal Findings: We linked a series of models to investigate responses of California's San Francisco Estuary-Watershed (SFEW) system to two contrasting scenarios of climate change. Model outputs for scenarios of fast and moderate warming are presented as 2010-2099 projections of nine indicators of changing climate, hydrology and habitat quality. Trends of these indicators measure rates of: increasing air and water temperatures, salinity and sea level; decreasing precipitation, runoff, snowmelt contribution to runoff, and suspended sediment concentrations; and increasing frequency of extreme environmental conditions such as water temperatures and sea level beyond the ranges of historical observations. Conclusions/Significance: Most of these environmental indicators change substantially over the 21st century, and many would present challenges to natural and managed systems. Adaptations to these changes will require flexible planning to cope with growing risks to humans and the challenges of meeting demands for fresh water and sustaining native biota. Programs of ecosystem rehabilitation and biodiversity conservation in coastal landscapes will be most likely to meet their objectives if they are designed from considerations that include: (1) an integrated perspective that river-estuary systems are influenced by effects of climate change operating on both watersheds and oceans; (2) varying sensitivity among environmental indicators to the uncertainty of future climates; (3) inevitability of biological community

Projected evolution of California's San Francisco Bay-Delta-river system in a century of climate change.

Directory of Open Access Journals (Sweden)

James E Cloern

Full Text Available Accumulating evidence shows that the planet is warming as a response to human emissions of greenhouse gases. Strategies of adaptation to climate change will require quantitative projections of how altered regional patterns of temperature, precipitation and sea level could cascade to provoke local impacts such as modified water supplies, increasing risks of coastal flooding, and growing challenges to sustainability of native species.We linked a series of models to investigate responses of California's San Francisco Estuary-Watershed (SFEW system to two contrasting scenarios of climate change. Model outputs for scenarios of fast and moderate warming are presented as 2010-2099 projections of nine indicators of changing climate, hydrology and habitat quality. Trends of these indicators measure rates of: increasing air and water temperatures, salinity and sea level; decreasing precipitation, runoff, snowmelt contribution to runoff, and suspended sediment concentrations; and increasing frequency of extreme environmental conditions such as water temperatures and sea level beyond the ranges of historical observations.Most of these environmental indicators change substantially over the 21(st century, and many would present challenges to natural and managed systems. Adaptations to these changes will require flexible planning to cope with growing risks to humans and the challenges of meeting demands for fresh water and sustaining native biota. Programs of ecosystem rehabilitation and biodiversity conservation in coastal landscapes will be most likely to meet their objectives if they are designed from considerations that include: (1 an integrated perspective that river-estuary systems are influenced by effects of climate change operating on both watersheds and oceans; (2 varying sensitivity among environmental indicators to the uncertainty of future climates; (3 inevitability of biological community changes as responses to cumulative effects of climate

Projected Evolution of California's San Francisco Bay-Delta-River System in a Century of Climate Change

Science.gov (United States)

Cloern, James E.; Knowles, Noah; Brown, Larry R.; Cayan, Daniel; Dettinger, Michael D.; Morgan, Tara L.; Schoellhamer, David H.; Stacey, Mark T.; van der Wegen, Mick; Wagner, R. Wayne; Jassby, Alan D.

2011-01-01

Background Accumulating evidence shows that the planet is warming as a response to human emissions of greenhouse gases. Strategies of adaptation to climate change will require quantitative projections of how altered regional patterns of temperature, precipitation and sea level could cascade to provoke local impacts such as modified water supplies, increasing risks of coastal flooding, and growing challenges to sustainability of native species. Methodology/Principal Findings We linked a series of models to investigate responses of California's San Francisco Estuary-Watershed (SFEW) system to two contrasting scenarios of climate change. Model outputs for scenarios of fast and moderate warming are presented as 2010–2099 projections of nine indicators of changing climate, hydrology and habitat quality. Trends of these indicators measure rates of: increasing air and water temperatures, salinity and sea level; decreasing precipitation, runoff, snowmelt contribution to runoff, and suspended sediment concentrations; and increasing frequency of extreme environmental conditions such as water temperatures and sea level beyond the ranges of historical observations. Conclusions/Significance Most of these environmental indicators change substantially over the 21st century, and many would present challenges to natural and managed systems. Adaptations to these changes will require flexible planning to cope with growing risks to humans and the challenges of meeting demands for fresh water and sustaining native biota. Programs of ecosystem rehabilitation and biodiversity conservation in coastal landscapes will be most likely to meet their objectives if they are designed from considerations that include: (1) an integrated perspective that river-estuary systems are influenced by effects of climate change operating on both watersheds and oceans; (2) varying sensitivity among environmental indicators to the uncertainty of future climates; (3) inevitability of biological community

State of transition: Marijuana use among young adults in the San Francisco Bay Area.

Science.gov (United States)

Holmes, Louisa M; Popova, Lucy; Ling, Pamela M

2016-09-01

California may vote on marijuana legalization in 2016. Young adults have the highest rates of marijuana use, but little is known about the correlates of use in this age group, including factors that may be affected by policy change. We investigated whether there are differences in marijuana use by sociodemographic characteristics, psychological distress, loneliness and social support, controlling for risk factors such as alcohol and cigarette use as well as perceived harm of marijuana. Bivariate and multivariable analysis of past 30day marijuana use using the 2014 San Francisco Bay Area Young Adult Health Survey, a probabilistic multi-mode survey of (N=1324) young adults (aged 18-26years) residing in Alameda and San Francisco Counties, stratified by race/ethnicity. 291 (27%) sample participants reported current marijuana use. Compared to non-Hispanic Whites (referent) Asian/Pacific Islander respondents were less likely to use marijuana (AOR, 0.42; 95% CI, 0.22-0.80) while multiracial participants were twice as likely (AOR, 2.27; 95% CI, 1.06-4.85). Psychological distress was not related to marijuana use, but social support (AOR, 1.42; 95% CI, 1.08-1.88) and loneliness (AOR, 1.42; 95% CI, 1.09-1.86) were. Perceived harm of marijuana was inversely related to marijuana use (AOR, 0.60; 95% CI, 0.51-0.70), while smoking cigarettes (AOR, 3.95; 95% CI, 2.28-6.84) and binge drinking (AOR, 1.13; 95% CI, 1.03-1.24) were positively related. Legalization policies should include public education campaigns addressing potential harms of marijuana use particularly targeting multiracial young adults who also engage in other risk behaviors, such as cigarette smoking and binge drinking. Copyright © 2016 Elsevier Inc. All rights reserved.

Modelling the transverse distribution of velocity and suspended sediment in tidal estuaries

NARCIS (Netherlands)

Huijts, K.M.H.

2011-01-01

An estuary is a semi-enclosed coastal body of water which has a free connection with the open sea and within which sea water is measurably diluted with fresh water derived from land drainage. Examples are the Western Scheldt River Estuary and the Chesapeake Bay. Within these environments complex

Don’t Work, Work at Home, or Commute? Discrete Choice Models of the Decision for San Francisco Bay Area Residents

OpenAIRE

Ory, D T; Mokhtarian, Patricia L

2005-01-01

Using socio-demographic, personality, and attitudinal data from 1,680 residents of the San Francisco Bay Area, we develop and estimate binary, multinomial, and nested logit models of the choice to work or not, whether or not to work at home, and whether to commute all of the time or some of the time (either by only working part time, or by working a compressed work week, or by telecommuting some of the time). To our knowledge, these are the first models of all these choices simultaneously. Th...

Development of an integrated ecosystem model to determine effectiveness of potential watershed management projects on improving Old Tampa Bay

Science.gov (United States)

Edward T. Sherwood; Holly Greening; Lizanne Garcia; Kris Kaufman; Tony Janicki; Ray Pribble; Brett Cunningham; Steve Peene; Jim Fitzpatrick; Kellie Dixon; Mike Wessel

2016-01-01

The Tampa Bay estuary has undergone a remarkable ecosystem recovery since the 1980s despite continued population growth within the region. However during this time, the Old Tampa Bay (OTB) segment has lagged behind the rest of the Bay’s recovery relative to improvements in overall water quality and seagrass coverage. In 2011, the Tampa Bay Estuary Program, in...

40 CFR 131.37 - California.

Science.gov (United States)

2010-07-01

... criteria are applicable to waters specified in the Water Quality Control Plan for Salinity for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary, adopted by the California State Water Resources Control... increased mortality and loss of habitat from increased water salinity; or for plants, significant reduction...

Habitat selection by Forster's Terns (Sterna forsteri) at multiple spatial scales in an urbanized estuary: The importance of salt ponds

Science.gov (United States)

Bluso-Demers, Jill; Ackerman, Joshua T.; Takekawa, John Y.; Peterson, Sarah

2016-01-01

The highly urbanized San Francisco Bay Estuary, California, USA, is currently undergoing large-scale habitat restoration, and several thousand hectares of former salt evaporation ponds are being converted to tidal marsh. To identify potential effects of this habitat restoration on breeding waterbirds, habitat selection of radiotagged Forster's Terns (Sterna forsteri) was examined at multiple spatial scales during the pre-breeding and breeding seasons of 2005 and 2006. At each spatial scale, habitat selection ratios were calculated by season, year, and sex. Forster's Terns selected salt pond habitats at most spatial scales and demonstrated the importance of salt ponds for foraging and roosting. Salinity influenced the types of salt pond habitats that were selected. Specifically, Forster's Terns strongly selected lower salinity salt ponds (0.5–30 g/L) and generally avoided higher salinity salt ponds (≥31 g/L). Forster's Terns typically used tidal marsh and managed marsh habitats in proportion to their availability, avoided upland and tidal flat habitats, and strongly avoided open bay habitats. Salt ponds provide important habitat for breeding waterbirds, and restoration efforts to convert former salt ponds to tidal marsh may reduce the availability of preferred breeding and foraging areas.

Groundwater-quality data in the North San Francisco Bay Shallow Aquifer study unit, 2012: results from the California GAMA Program

Science.gov (United States)

Bennett, George L.; Fram, Miranda S.

2014-01-01

Groundwater quality in the 1,850-square-mile North San Francisco Bay Shallow Aquifer (NSF-SA) study unit was investigated by the U.S. Geological Survey (USGS) from April to August 2012, as part of the California State Water Resources Control Board (SWRCB) Groundwater Ambient Monitoring and Assessment (GAMA) Program’s Priority Basin Project (PBP). The GAMA-PBP was developed in response to the California Groundwater Quality Monitoring Act of 2001 and is being conducted in collaboration with the SWRCB and Lawrence Livermore National Laboratory (LLNL). The NSF-SA study unit was the first study unit to be sampled as part of the second phase of the GAMA-PBP, which focuses on the shallow aquifer system.

Concentration and Distribution of Hydrophobic Organic Contaminants and Metals in the Estuaries of Ukraine

Science.gov (United States)

In this baseline study of Ukrainian estuaries, sediments and organisms from the Dnieper and Boh estuaries and Danube Delta on the mainland, Sevastopol and Balaklava Bays on the Crimean Peninsula, and coastal Black Sea along the Crimean Peninsula were collected in 2006. Contamina...

Phase 1 studies summary of major findings of the South Bay Salt Pond Restoration Project, South San Francisco Bay, California

Science.gov (United States)

Valoppi, Laura

2018-04-02

Executive SummaryThe South Bay Salt Pond Restoration Project (Project) is one of the largest restoration efforts in the United States. It is located in South San Francisco Bay of California. It is unique not only for its size—more than 15,000 acres—but also for its location adjacent to one of the nation’s largest urban areas, home to more than 4 million people (Alameda, Santa Clara, and San Mateo Counties). The Project is intended to restore and enhance wetlands in South San Francisco Bay while providing for flood management, wildlife-oriented public access, and recreation. Restoration goals of the project are to provide a mosaic of saltmarsh habitat to benefit marsh species and managed ponds to benefit waterbirds, throughout 3 complexes and 54 former salt ponds.Although much is known about the project area, significant uncertainties remain with a project of this geographic and temporal scale of an estimated 50 years to complete the restoration. For example, in order to convert anywhere from 50 to 90 percent of the existing managed ponds to saltmarsh habitat, conservation managers first enhance the habitat of managed ponds in order to increase use by waterbirds, and provide migratory, wintering, and nesting habitat for more than 90 species of waterbirds. Project managers have concluded that the best way to address these uncertainties is to carefully implement the project in phases and learn from the outcome of each phase. The Adaptive Management Plan (AMP) identifies specific restoration targets for multiple aspects of the Project and defines triggers that would necessitate some type of management action if a particular aspect is trending negatively. U.S. Geological Survey (USGS) biologist Laura Valoppi served as the project Lead Scientist and oversaw implementation of the AMP in coordination with other members of the Project Management Team (PMT), comprised of representatives from the California State Coastal Conservancy, California Department of Fish and

A 130 year record of pollution in the Suances estuary (southern Bay of Biscay): Implications for environmental management

Energy Technology Data Exchange (ETDEWEB)

Irabien, M.J. [Departamento de Mineralogia y Petrologia, Facultad de Ciencia y Tecnologia, Universidad del Pais Vasco/EHU, Apartado 644, 48080 Bilbao (Spain)], E-mail: mariajesus.irabien@ehu.es; Cearreta, A. [Departamento de Estratigrafia y Paleontologia, Facultad de Ciencia y Tecnologia, Universidad del Pais Vasco/EHU, Apartado 644, 48080 Bilbao (Spain); Leorri, E. [Departamento de Estratigrafia y Paleontologia, Facultad de Ciencia y Tecnologia, Universidad del Pais Vasco/EHU, Apartado 644, 48080 Bilbao (Spain); Sociedad de Ciencias Aranzadi, Zorroagagaina kalea 11, 20014 Donostia-San Sebastian (Spain); Gomez, J. [Departamento de Ciencias Medicas y Quirurgicas, Facultad de Medicina, Universidad de Cantabria, Avda Herrera Oria s/n, 39011 Santander (Spain); Viguri, J. [Departamento de Ingenieria Quimica y Quimica Inorganica, ETSIIT, Universidad de Cantabria, Avda Los Castros s/n, 39005 Santander (Spain)

2008-10-15

Geochemical composition (Al, Zn, Pb, Cd, Cu, Ni, Cr and As) and foraminiferal assemblages in surface and core sediments were determined to assess the current situation and the recent environmental transformation of the Suances estuary (southern Bay of Biscay, Spain). Dating of the historical record has been achieved using isotopic analysis ({sup 210}Pb, {sup 137}Cs) and two benchmark events such as the beginning of the mineral exploitation in the Reocin Pb-Zn deposits and the evolution of the chlor-alkali industry (inputs of Hg). Concentrations of Zn, Pb and Cd in both surface and core samples are remarkably higher than background values, reflecting the existence of significant amounts of polluted materials. The dramatic environmental impact of this pollution is clearly recorded by the change of the foraminiferal assemblages that even reach an afaunal stage during recent decades. Application of two different sets of Sediment Quality Guidelines confirm that they exert potential risk to the environment, and therefore if dredged they should need specific management measures. The results provide a reference database to monitor future environmental changes in the Suances estuary, particularly as regards the contaminated sediment storage and the re-colonization by autochtonous meiofauna.

A 130 year record of pollution in the Suances estuary (southern Bay of Biscay): Implications for environmental management

International Nuclear Information System (INIS)

Irabien, M.J.; Cearreta, A.; Leorri, E.; Gomez, J.; Viguri, J.

2008-01-01

Geochemical composition (Al, Zn, Pb, Cd, Cu, Ni, Cr and As) and foraminiferal assemblages in surface and core sediments were determined to assess the current situation and the recent environmental transformation of the Suances estuary (southern Bay of Biscay, Spain). Dating of the historical record has been achieved using isotopic analysis ( 210 Pb, 137 Cs) and two benchmark events such as the beginning of the mineral exploitation in the Reocin Pb-Zn deposits and the evolution of the chlor-alkali industry (inputs of Hg). Concentrations of Zn, Pb and Cd in both surface and core samples are remarkably higher than background values, reflecting the existence of significant amounts of polluted materials. The dramatic environmental impact of this pollution is clearly recorded by the change of the foraminiferal assemblages that even reach an afaunal stage during recent decades. Application of two different sets of Sediment Quality Guidelines confirm that they exert potential risk to the environment, and therefore if dredged they should need specific management measures. The results provide a reference database to monitor future environmental changes in the Suances estuary, particularly as regards the contaminated sediment storage and the re-colonization by autochtonous meiofauna

Diurnal and Intra-Annual Variations in Greenhouse Gases at Fixed Sites in the San Francisco Bay Area

Science.gov (United States)

Newman, S.; Guha, A.; Martien, P. T.; Bower, J.; Perkins, I.; Randall, S.; Young, A.; Stevenson, E.; Hilken, H.

2017-12-01

The Bay Area Air Quality Management District, the San Francisco Bay Area's air quality regulatory agency, has set a goal to reduce the region's greenhouse gas (GHG) emissions to 80% below 1990 levels by 2050, consistent with the State of California's climate goals. Recently, the Air District's governing board adopted a 2017 Clean Air Plan which lays out the agency's vision and includes actions to put the region on a path towards achieving the 2050 goal while also reducing air pollution and related health impacts. The Plan includes GHG rule-making efforts, policy initiatives, local government partnerships, outreach, grants, and incentives, encompassing over 250 specific implementation actions across all economic sectors to effect ambitious emission reductions in the region. To track trends in atmospheric observations of GHGs and associated species and monitor changes in regional emission patterns, the Air District has established a fixed site network (CO2, CH4, CO) of one generally upwind site (Bodega Bay - on the coast north of Marin County) and three receptor sites (Bethel Island - east of the major refineries, in the Sacramento River Delta; Livermore - east of the bulk of the East Bay cities; and San Martin - south of the major city of San Jose). Having collected over a year of data for each of the fixed sites, the Air District is now investigating spatial and temporal variations in GHG emissions. Concentrating on variations in diurnal cycles, we see the commonly observed pattern of seasonal changes in diurnal amplitude at all sites, with larger variations during the winter than the summer, consistent with seasonally varying daily changes in planetary boundary layer heights. Investigations explore the weekday/weekend effect on the diurnal patterns and the effect of seasonal wind direction changes on the intra-annual variations of the local enhancements. The Air District is beginning to investigate the ways in which the fixed site network reflects the dominant

Stable Isotopic Composition of Dissolved Organic Nitrogen Fueling Brown Tide in a Semi-Arid Texas Estuary

Science.gov (United States)

Campbell, J.; Felix, J. D. D.; Wetz, M.; Cira, E.

2017-12-01

Harmful algal blooms (HABs) have the potential to adversely affect the water quality of estuaries and, consequently, their ability to support healthy and diverse ecosystems. Since the early 1990s, Baffin Bay, a semi-arid south Texas estuary, has progressively experienced harmful algal blooms. The primary species of HAB native to the Baffin Bay region, Aureoumbra lagunensis, is unable to utilize nitrate as a nutrient source, but instead relies on forms of reduced nitrogen (such as dissolved organic nitrogen (DON) and ammonium (NH4+)) for survival. DON levels in Baffin Bay (77 ± 10 µM) exceed the DON concentrations of not only typical Texas estuaries, but estuaries worldwide. Additionally, DON accounts for 90% of the total dissolved nitrogen (TDN) in Baffin Bay, followed by NH4+ at 8%, and NO3-+NO2- contributing 2%. Due to the dependence of A. lagunensis on the reduced forms of nitrogen as an energy source and the elevated concentrations of DON throughout the bay, it is important to identify the origin of this nitrogen as well as how it's being processed as it cycles through the ecosystem. The presented work investigates the stable isotopic composition of reactive nitrogen (Nr) (δ15N-DON, δ15N-NH4+, and δ15N-NO3-) in Baffin Bay samples collected monthly at nine stations over the period of one year. The work provides preliminary evidence of Nr sources and mechanisms driving favorable conditions for HAB proliferation. This information can be useful and applicable to estuarine ecosystems in various settings, advancing scientific progress towards mitigating blooms. Additionally, since the elevated concentrations of DON make Baffin Bay uniquely suited to investigate its sources and processing, this project will aid in characterizing the role of this largely unstudied form of Nr, which could provide insight and change perceptions about the role of DON in nitrogen dynamics.

Food Webs in an Estuary.

Science.gov (United States)

Dunne, Barbara B.

The Maryland Marine Science Education Project has produced a series of mini-units in marine science education for the junior high/middle school classroom. This unit focuses on food chains in an estuary. Although the unit specifically treats the Chesapeake Bay, it may be adapted for use with similar estuarine systems. In addition, the unit may be…

Continuous resistivity profiling data from the Corsica River Estuary, Maryland

Science.gov (United States)

Cross, V.A.; Bratton, J.F.; Worley, C.R.; Crusius, J.; Kroeger, K.D.

2011-01-01

Submarine groundwater discharge (SGD) into Maryland's Corsica River Estuary was investigated as part of a larger study to determine its importance in nutrient delivery to the Chesapeake Bay. The Corsica River Estuary represents a coastal lowland setting typical of much of the eastern bay. An interdisciplinary U.S. Geological Survey (USGS) science team conducted field operations in the lower estuary in April and May 2007. Resource managers are concerned about nutrients that are entering the estuary via SGD that may be contributing to eutrophication, harmful algal blooms, and fish kills. Techniques employed in the study included continuous resistivity profiling (CRP), piezometer sampling of submarine groundwater, and collection of a time series of radon tracer activity in surface water. A CRP system measures electrical resistivity of saturated subestuarine sediments to distinguish those bearing fresh water (high resistivity) from those with saline or brackish pore water (low resistivity). This report describes the collection and processing of CRP data and summarizes the results. Based on a grid of 67.6 kilometers of CRP data, low-salinity (high-resistivity) groundwater extended approximately 50-400 meters offshore from estuary shorelines at depths of 5 to >12 meters below the sediment surface, likely beneath a confining unit. A band of low-resistivity sediment detected along the axis of the estuary indicated the presence of a filled paleochannel containing brackish groundwater. The meandering paleochannel likely incised through the confining unit during periods of lower sea level, allowing the low-salinity groundwater plumes originating from land to mix with brackish subestuarine groundwater along the channel margins and to discharge. A better understanding of the spatial variability and geological controls of submarine groundwater flow beneath the Corsica River Estuary could lead to improved models and mitigation strategies for nutrient over-enrichment in the

Physical processes in a coupled bay-estuary coastal system: Whitsand Bay and Plymouth Sound

Science.gov (United States)

Uncles, R. J.; Stephens, J. A.; Harris, C.

2015-09-01

Whitsand Bay and Plymouth Sound are located in the southwest of England. The Bay and Sound are separated by the ∼2-3 km-wide Rame Peninsula and connected by ∼10-20 m-deep English Channel waters. Results are presented from measurements of waves and currents, drogue tracking, surveys of salinity, temperature and turbidity during stratified and unstratified conditions, and bed sediment surveys. 2D and 3D hydrodynamic models are used to explore the generation of tidally- and wind-driven residual currents, flow separation and the formation of the Rame eddy, and the coupling between the Bay and the Sound. Tidal currents flow around the Rame Peninsula from the Sound to the Bay between approximately 3 h before to 2 h after low water and form a transport path between them that conveys lower salinity, higher turbidity waters from the Sound to the Bay. These waters are then transported into the Bay as part of the Bay-mouth limb of the Rame eddy and subsequently conveyed to the near-shore, east-going limb and re-circulated back towards Rame Head. The Simpson-Hunter stratification parameter indicates that much of the Sound and Bay are likely to stratify thermally during summer months. Temperature stratification in both is pronounced during summer and is largely determined by coastal, deeper-water stratification offshore. Small tidal stresses in the Bay are unable to move bed sediment of the observed sizes. However, the Bay and Sound are subjected to large waves that are capable of driving a substantial bed-load sediment transport. Measurements show relatively low levels of turbidity, but these respond rapidly to, and have a strong correlation with, wave height.

Seasonal estimates of DOC standing stocks in Apalachicola Bay estuary: Towards a better understanding using field, ocean color and model data

Science.gov (United States)

D'Sa, E. J.; Joshi, I.; Osburn, C. L.; Bianchi, T. S.; Ko, D. S.; Oviedo-Vargas, D.; Arellano, A.; Ward, N.

2016-12-01

Apalachicola Bay, a semi-enclosed estuary located in Florida's panhandle, is well known for its water quality and oyster yields. We present the use of combined field and ocean color satellite observations and the outputs of a high-resolution hydrodynamic model to study the influence of physical processes on the distribution and the transport of terrestrially derived CDOM and DOC to shelf waters during the spring and fall of 2015. Determination of DOC stocks were based on the development of a CDOM algorithm (R2 = 0.87, N = 9) for the VIIRS ocean color sensor, and the assessment of CDOM - DOC relationships (R2 = 0.88, N = 13 in March; R2 = 0.83, N = 24 in November) for the Apalachicola Bay. Satellite-derived CDOM and DOC maps together with model-based salinity distributions revealed their spatial extent, sources and transport to the shelf water. Furthermore, strong seasonal influence on DOM distribution in the bay was associated with inputs from Apalachicola and Carrabelle Rivers and the surrounding marshes. Estimates of DOC standing stocks in the bay obtained using ocean color data and high-resolution bathymetry showed relatively higher stocks in November ( 3.71 × 106 kg C, 560 km2) than in March ( 4.07 × 106 kg C, 560 km2) despite lower river discharge in dry season. Results of DOC flux estimates from the bay to coastal waters will also be presented.

Understanding the fate of iron in a modern temperate estuary: Leirarvogur, Iceland

International Nuclear Information System (INIS)

Byrne, Gemma M.; Worden, Richard H.; Hodgson, David M.; Polya, David A.; Lythgoe, Paul R.; Barrie, Craig D.; Boyce, Adrian J.

2011-01-01

Highlights: → Fluvial Fe (aq) and Fe (total) concentrations drop upon mixing with seawater in estuaries. → The majority of Fe in estuaries is lost in the bay-head delta. → Our results suggest that the bay-head delta is a key location in Fe-mineral formation. → Isotopic variation in estuarine waters may play a role in the formation of Fe-minerals. - Abstract: Fluvial dissolved Fe concentrations decrease upon mixing with seawater, resulting in the formation of Fe-floccules. However, a clear understanding of the fate of these floccules has yet to be established. Assessing how tidal processes affect the formation of Fe-colloids in the Leirarvogur estuary, SW Iceland, is an important step in understanding the formation and potential deposition of estuarine Fe-rich minerals within this estuarine system. The Leirarvogur estuary drains predominately Fe-rich basalt, increasing the likelihood of detecting changes in Fe-phases. Fluvial waters and local lake waters that drain into the estuary were compared and the effects of seasonal changes were considered, in an attempt to understand how varying end-members and external factors play a role in Fe-rich mineral formation. Aqueous and colloidal Fe concentrations were found to be greater towards the head of the Leirarvogur estuary, suggesting that potential Fe-rich minerals and complexes are forming at sites of fluvial input. Increasing suspended colloidal Fe towards the estuary mouth suggests that Fe-colloids are readily transported seaward.

Studies of movement of sediments in Santos bay

International Nuclear Information System (INIS)

Bandeira, J.V.; Aun, P.E.; Bomtempo, V.L.; Salim, L.H.; Minardi, P.S.P.; Santos, J.A.

1990-01-01

In the years of 1973, 74, 80, 81 and 85 several studies were performed at Santos bay, using radioactive tracers, with the following main objectives: to evaluate the behaviour (on the bottom and in suspension) of the mixture of silt and clay which is dredged from the estuary and from its access channel and dumped at pre-determined sites, in the bay and surrounding regions, with the objective of optimizing dredging disposal operations; to quantify the movement of sandy sediments on the bottom, in 3 areas of the bay, in summer and winter conditions, to obtain pertinent information related to the siltation of the access channel. As results of these studies, it was found that: the ancient dumping site, near Itaipu Point, in the western limit of the bay, was inadequate, since the material could return to the bay and to the estuary. The dumping site was moved to a region at the south of Moela Island, located eastwards relative to the bay, which brought substantial economies in dredging works; the bottom sediment transport was quantified, following clouds of tagged materials for about 8 months, thus obtaining important conclusions about transport rates in different regions of the bay. An analysis of the intervening hydrodynamic agents is also presented. (author) (L.J.C.)

Description of gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California

Science.gov (United States)

Woodrow, Donald L.; John L. Chin,; Wong, Florence L.; Fregoso, Theresa A.; Jaffe, Bruce E.

2017-06-27

Seventy-two gravity cores were collected by the U.S. Geological Survey in 1990, 1991, and 2000 from San Pablo Bay and Carquinez Strait, California. The gravity cores collected within San Pablo Bay contain bioturbated laminated silts and sandy clays, whole and broken bivalve shells (mostly mussels), fossil tube structures, and fine-grained plant or wood fragments. Gravity cores from the channel wall of Carquinez Strait east of San Pablo Bay consist of sand and clay layers, whole and broken bivalve shells (less than in San Pablo Bay), trace fossil tubes, and minute fragments of plant material.

Projected evolution of California's San Francisco Bay-Delta-River System in a century of continuing climate change

Science.gov (United States)

Cloern, James E.; Knowles, Noah; Brown, Larry R.; Cayan, Daniel; Dettinger, Michael D.; Morgan, Tara L.; Schoellhamer, David H.; Stacey, Mark T.; van der Wegen, Mick; Wagner, R. Wayne; Jassby, Alan D.

2011-01-01

Background Accumulating evidence shows that the planet is warming as a response to human emissions of greenhouse gases. Strategies of adaptation to climate change will require quantitative projections of how altered regional patterns of temperature, precipitation and sea level could cascade to provoke local impacts such as modified water supplies, increasing risks of coastal flooding, and growing challenges to sustainability of native species. Methodology/Principal Findings We linked a series of models to investigate responses of California's San Francisco Estuary-Watershed (SFEW) system to two contrasting scenarios of climate change. Model outputs for scenarios of fast and moderate warming are presented as 2010–2099 projections of nine indicators of changing climate, hydrology and habitat quality. Trends of these indicators measure rates of: increasing air and water temperatures, salinity and sea level; decreasing precipitation, runoff, snowmelt contribution to runoff, and suspended sediment concentrations; and increasing frequency of extreme environmental conditions such as water temperatures and sea level beyond the ranges of historical observations. Conclusions/Significance Most of these environmental indicators change substantially over the 21st century, and many would present challenges to natural and managed systems. Adaptations to these changes will require flexible planning to cope with growing risks to humans and the challenges of meeting demands for fresh water and sustaining native biota. Programs of ecosystem rehabilitation and biodiversity conservation in coastal landscapes will be most likely to meet their objectives if they are designed from considerations that include: (1) an integrated perspective that river-estuary systems are influenced by effects of climate change operating on both watersheds and oceans; (2) varying sensitivity among environmental indicators to the uncertainty of future climates; (3) inevitability of biological community

Using Remote Sensing to Determine the Spatial Scales of Estuaries

Science.gov (United States)

Davis, C. O.; Tufillaro, N.; Nahorniak, J.

2016-02-01

One challenge facing Earth system science is to understand and quantify the complexity of rivers, estuaries, and coastal zone regions. Earlier studies using data from airborne hyperspectral imagers (Bissett et al., 2004, Davis et al., 2007) demonstrated from a very limited data set that the spatial scales of the coastal ocean could be resolved with spatial sampling of 100 m Ground Sample Distance (GSD) or better. To develop a much larger data set (Aurin et al., 2013) used MODIS 250 m data for a wide range of coastal regions. Their conclusion was that farther offshore 500 m GSD was adequate to resolve large river plume features while nearshore regions (a few kilometers from the coast) needed higher spatial resolution data not available from MODIS. Building on our airborne experience, the Hyperspectral Imager for the Coastal Ocean (HICO, Lucke et al., 2011) was designed to provide hyperspectral data for the coastal ocean at 100 m GSD. HICO operated on the International Space Station for 5 years and collected over 10,000 scenes of the coastal ocean and other regions around the world. Here we analyze HICO data from an example set of major river delta regions to assess the spatial scales of variability in those systems. In one system, the San Francisco Bay and Delta, we also analyze Landsat 8 OLI data at 30 m and 15 m to validate the 100 m GSD sampling scale for the Bay and assess spatial sampling needed as you move up river.

Geology and natural history of the San Francisco Bay area: A field-trip guidebook

Science.gov (United States)

Stoffer, Philip W.; Gordon, Leslie C.

2001-01-01

A National Association of Geoscience Teachers Far Western Section (NAGT-FWS) field conference is an ideal forum for learning about the geology and natural history of the San Francisco Bay area. We visit classic field sites, renew old friendships, and make new ones. This collection of papers includes field guides and road logs for all of the Bay-area trips held during the NAGT-FWS 2001 Fall Field Conference and supplemental chapters on other aspects of the area’s natural and human history. The trips touch on many aspects of the geology and natural hazards of the Bay area, especially urban problems associated with living on an active tectonic plate margin: earthquake faults, coastal erosion, landslides, and the utilization of land and natural resources. We hope this conference not only provides a two-day learning opportunity for conference participants but that students and educators will use this field guidebook for future teaching and research.Many thanks are due to the U.S. Geological Survey (USGS) and San José State University (SJSU) for cohosting the conference. We are grateful to each of the field trip leaders for preparing the trips and writing the accompanying guides. We especially appreciate the many hours put in by the guidebook reviewers, Robert I. Tilling (USGS) and Paula Messina (SJSU), and to the USGS Western Publications Group for editing, layout, and web posting. Additional guidebook contributions include articles by John Galloway, Scott Starratt, Page Mosier, and Susan Toussaint. During the conference guest speakers include Robert I. Tilling (USGS Volcano Hazards Team) and Ross Stein (USGS Earthquake Hazards Team). Workshops prepared for the conference include GIS in the classroom, using USGS data by John Vogel (USGS) and Paula Messina (SJSU), and The Best of BAESI (Bay Area Earth Science Institute), a teacher training organization under the direction of Ellen Metzger (SJSU) and Richard Sedlock (SJSU). The conference provides an opportunity to

Developing a Phytoplankton Biotic Index as an Indicator of Freshwater Inflow within a Subtropical Estuary

Science.gov (United States)

Steichen, J. L.; Quigg, A.; Lucchese, A.; Preischel, H.

2016-02-01

Freshwater inflows drive the water and sediment quality in coastal bays and estuaries influencing the ecosystem and health of the biological community. Phytoplankton accessory pigments (used as a proxy for major taxonomic groups) have been utilized to develop a biotic index of physical, chemical and biotic disturbances in Chesapeake Bay (USA) and other estuarine systems. In this study we have used the Chesapeake Bay - Phytoplankton Index of Biotic Integrity model as a guide in developing an index for Galveston Bay, TX (USA) as an indicator of sufficient freshwater inflow to a subtropical estuary. Multivariate statistical analyses were run using PRIMER-E+PERMANOVA to determine the correlations between phytoplankton accessory pigment concentrations and a suite of abiotic factors associated with freshwater inflow (salinity, DIN, PO4, secchi). Phytoplankton pigment concentrations and water quality parameters were collected across Galveston Bay on a monthly basis from 2008-2013. In the upper region of the bay nearest the river source Dinophyceae, Cryptophyceae (winter (Dec-Feb)) and Chlorophyceae (winter and spring (Mar-May)) were significantly correlated to freshwater inflow and nutrient concentrations PO4 (p<0.05). Increased concentrations of Bacillariophyceae and Cyanophyceae (summer (Jun-Aug)) were significantly correlated to lower concentrations of DIN (p<0.05). Near the mouth of the estuary there was a significant correlation between the increase in Bacillariophyceae, Cyanophyceae, Cryptophyceae and Dinophyceae with decreasing PO4 (p<0.05). Within the dynamic system of Galveston Bay we are working to apply a Phytoplankton Index of Biotic Integrity as a means of monitoring the biological health of this ecologically and economically important estuarine ecosystem.

Impacts of representing sea-level rise uncertainty on future flood risks: An example from San Francisco Bay.

Science.gov (United States)

Ruckert, Kelsey L; Oddo, Perry C; Keller, Klaus

2017-01-01

Rising sea levels increase the probability of future coastal flooding. Many decision-makers use risk analyses to inform the design of sea-level rise (SLR) adaptation strategies. These analyses are often silent on potentially relevant uncertainties. For example, some previous risk analyses use the expected, best, or large quantile (i.e., 90%) estimate of future SLR. Here, we use a case study to quantify and illustrate how neglecting SLR uncertainties can bias risk projections. Specifically, we focus on the future 100-yr (1% annual exceedance probability) coastal flood height (storm surge including SLR) in the year 2100 in the San Francisco Bay area. We find that accounting for uncertainty in future SLR increases the return level (the height associated with a probability of occurrence) by half a meter from roughly 2.2 to 2.7 m, compared to using the mean sea-level projection. Accounting for this uncertainty also changes the shape of the relationship between the return period (the inverse probability that an event of interest will occur) and the return level. For instance, incorporating uncertainties shortens the return period associated with the 2.2 m return level from a 100-yr to roughly a 7-yr return period (∼15% probability). Additionally, accounting for this uncertainty doubles the area at risk of flooding (the area to be flooded under a certain height; e.g., the 100-yr flood height) in San Francisco. These results indicate that the method of accounting for future SLR can have considerable impacts on the design of flood risk management strategies.

Impacts of representing sea-level rise uncertainty on future flood risks: An example from San Francisco Bay.

Directory of Open Access Journals (Sweden)

Kelsey L Ruckert

Full Text Available Rising sea levels increase the probability of future coastal flooding. Many decision-makers use risk analyses to inform the design of sea-level rise (SLR adaptation strategies. These analyses are often silent on potentially relevant uncertainties. For example, some previous risk analyses use the expected, best, or large quantile (i.e., 90% estimate of future SLR. Here, we use a case study to quantify and illustrate how neglecting SLR uncertainties can bias risk projections. Specifically, we focus on the future 100-yr (1% annual exceedance probability coastal flood height (storm surge including SLR in the year 2100 in the San Francisco Bay area. We find that accounting for uncertainty in future SLR increases the return level (the height associated with a probability of occurrence by half a meter from roughly 2.2 to 2.7 m, compared to using the mean sea-level projection. Accounting for this uncertainty also changes the shape of the relationship between the return period (the inverse probability that an event of interest will occur and the return level. For instance, incorporating uncertainties shortens the return period associated with the 2.2 m return level from a 100-yr to roughly a 7-yr return period (∼15% probability. Additionally, accounting for this uncertainty doubles the area at risk of flooding (the area to be flooded under a certain height; e.g., the 100-yr flood height in San Francisco. These results indicate that the method of accounting for future SLR can have considerable impacts on the design of flood risk management strategies.

Levels and ages of selenium and metals in sedimentary cores of Ise Bay as determined by 210-Pb dating technique

International Nuclear Information System (INIS)

Itoh, K.; Chikuma, M.; Tanaka, H.

1987-01-01

Ise Bay is connected with estuaries of Nagoya harbor which is one of the most active industrial areas in Japan. Nagoya harbor estuaries are recipient of a large quantity of municipal and industrial discharge. The land boundaries of estuaries are sites of the manufacturing industries and they are utilized by oil tankers and cargo vessels. Accumulation of various kinds of metal such as selenium, mercury, zinc, copper, lead, and chromium have occurred in sediments for many years. The authors have carried out an extensive investigation on the selenium pollution of sea water and sediments of Nagoya harbor estuaries. The input of selenium to Ise Bay has occurred ever since the industrial activity was established in Nagoya city. Investigators have reported the sedimentary record of metals of Tokyo Bay, Osaka Bay and Seto Inland Sea. Some investigators reported the pollution caused by polynuclear aromatic hydrocarbon in sediments of Ise Bay, but did not mention metals. The authors determined metals including selenium in sedimentary core samples. The ages of those samples were already estimated by 210-Pb dating technique

Biscayne Bay Florida Bottlenose Dolphin Studies

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — These data sets include a compilation of small vessel based studies of bottlenose dolphins that reside within Biscayne Bay, Florida, adjacent estuaries and nearshore...

Stereo photo series for quantifying natural fuels.Volume XIII: grasslands, shrublands, oak-bay woodlands, and eucalyptus forests in the East Bay of California.

Science.gov (United States)

Clinton S. Wright; Robert E. Vihnanek

2014-01-01

Four series of photographs display a range of natural conditions and fuel loadings for grassland, shrubland, oak-bay woodland, and eucalyptus forest ecosystems on the eastern slopes of the San Francisco Bay area of California. Each group of photos includes inventory information summarizing vegetation composition, structure, and loading; woody material loading and...

Tampa Bay Ecosystem Services Demonstration Pilot Phase 2 web site

Science.gov (United States)

The value of nature's benefits is difficult to consider in environmental decision-making since ecosystem goods and services are usually not well measured or quantified in economic terms. The Tampa Bay Estuary Program, Tampa Bay Regional Planning Council, the U.S. Environmental Pr...

Is drinking water a risk factor for endemic cryptosporidiosis? A case-control study in the immunocompetent general population of the San Francisco Bay Area

Directory of Open Access Journals (Sweden)

Nadle Joelle

2003-03-01

Full Text Available Abstract Background Cryptosporidiosis, caused by Cryptosporidium, is an enteric illness that has received much attention as an infection of immunocompromised persons as well as in community outbreaks (frequently waterborne. There are, however, no studies of the risk factors for sporadic community-acquired cryptosporidiosis in the immunocompetent US population. We undertook a case-control study in the San Francisco Bay Area as part of a national study sponsored by the Centers for Disease Control and Prevention to ascertain the major routes of transmission for endemic cryptosporidiosis, with an emphasis on evaluating risk from drinking water. Methods Cases were recruited from a population-based, active surveillance system and age-matched controls were recruited using sequential random-digit dialing. Cases (n = 26 and controls (n = 62 were interviewed by telephone using a standardized questionnaire that included information about the following exposures: drinking water, recreational water, food items, travel, animal contact, and person-to-person fecal contact, and (for adults sexual practices. Results In multivariate conditional logistic regression analyses no significant association with drinking water was detected. The major risk factor for cryptosporidiosis in the San Francisco Bay Area was travel to another country (matched odds ratio [95% confidence interval]: 24.1 [2.6, 220]. Conclusion The results of this study do not support the hypothesis that drinking water is an independent risk factor for cryptosporidiosis among the immunocompetent population. These findings should be used to design larger studies of endemic cryptosporidiosis to elucidate the precise mechanisms of transmission, whether waterborne or other.

Examining and Comparing Earthquake Readiness in East San Francisco Bay Area Communities (Invited)

Science.gov (United States)

Ramirez, N.; Bul, V.; Chavez, A.; Chin, W.; Cuff, K. E.; Girton, C.; Haynes, D.; Kelly, G.; Leon, G.; Ramirez, J.; Ramirez, R.; Rodriquez, F.; Ruiz, D.; Torres, J.

2009-12-01

Based on past experiences, the potential for casualties and mass destruction that can result from a high magnitude earthquake are well known. Nevertheless, given the East San Francisco Bay Area’s proximity to the Hayward and San Andreas faults, learning about earthquakes and disaster preparedness is of particular importance. While basic educational programs and materials are available both through emergency relief agencies and schools, little research has been done on their effectiveness. Because of the wide socioeconomic spread between communities in the East Bay, we decided to investigate understandings of issues related to disaster and earthquake preparedness among local populations based upon average household income. To accomplish this, we created a survey that was later uploaded to and implemented using Palm Treo Smart Phones. Survey locations were selected in such a way that they reflected the understandings of residents in a diverse set of socio-economic settings. Thus, these locations included a grocery store and nearby plaza in the Fruitvale district of Oakland, CA (zip=94601; median household income= 33,152), as well as the nearby town of Alameda, CA (zip=94502, median household income= 87,855). Preliminary results suggest that in terms of the objective questions on the survey, people from Alameda who participated in our study performed significantly better (difference in percentage correct greater than 10%) than the people from Fruitvale on two of the advanced earthquake knowledge questions. Interestingly enough, people in Fruitvale significantly outperformed people in Alameda on two of the basic earthquake knowledge questions. The final important finding was that while houses in Alameda tended to be newer and more often retrofitted than houses in Fruitvale, the people of the latter location tended to have a higher percentage of respondents claim confidence in the ability of their house to withstand a major earthquake. Based on preliminary results we

Airborne Quantification of Methane Emissions in the San Francisco Bay Area of California

Science.gov (United States)

Guha, A.; Newman, S.; Martien, P. T.; Young, A.; Hilken, H.; Faloona, I. C.; Conley, S.

2017-12-01

The Bay Area Air Quality Management District, the San Francisco Bay Area's air quality regulatory agency, has set a goal to reduce the region's greenhouse gas (GHG) emissions 80% below 1990 levels by 2050, consistent with the State of California's climate protection goal. The Air District maintains a regional GHG emissions inventory that includes emissions estimates and projections which influence the agency's programs and regulatory activities. The Air District is currently working to better characterize methane emissions in the GHG inventory through source-specific measurements, to resolve differences between top-down regional estimates (Fairley and Fischer, 2015; Jeong et al., 2016) and the bottom-up inventory. The Air District funded and participated in a study in Fall 2016 to quantify methane emissions from a variety of sources from an instrumented Mooney aircraft. This study included 40 hours of cylindrical vertical profile flights that combined methane and wind measurements to derive mass emission rates. Simultaneous measurements of ethane provided source-apportionment between fossil-based and biological methane sources. The facilities sampled included all five refineries in the region, five landfills, two dairy farms and three wastewater treatment plants. The calculated mass emission rates were compared to bottom-up rates generated by the Air District and to those from facility reports to the US EPA as part of the mandatory GHG reporting program. Carbon dioxide emission rates from refineries are found to be similar to bottom-up estimates for all sources, supporting the efficacy of the airborne measurement methodology. However, methane emission estimates from the airborne method showed significant differences for some source categories. For example, methane emission estimates based on airborne measurements were up to an order of magnitude higher for refineries, and up to five times higher for landfills compared to bottom-up methods, suggesting significant

Hydrodynamic Aspects at Vitória Bay Mouth, ES

Directory of Open Access Journals (Sweden)

FLÁVIA A.A. GARONCE

2014-06-01

Full Text Available Understading the hydrodynamic behavior and suspended particulated matter (SPM transport are of great importance in port regions such as Vitória Harbor, which is located at Vitória Bay, Vitória – ES, Brazil. Vitória Bay is an estuary that has not been systematically assessed through a temporal analysis in order to identify its hydrodynamics characteristics and SPM exchange. This study aims to investigate salt and suspended particulate matter flux at the estuarine mouth of Vitória Bay by understanding the temporal variation of salinity, temperature and tidal currents within the water column and at the channel crosssection. Results showed that the estuarine mouth tended to present partial stratification periods during neap tides and little stratification in spring tides. The circulation pattern was mainly influenced by the tide, with little influence from river discharge. With regard to the SPM, the mouth of the estuary tended to show low concentrations, with the highest values occurring during the dry season. A close relationship between momentary discharge, SPM and salt fluxes was observed. Despite all the data was collected at the mouth of the estuary, the system showed an importation trend of salt in all cycles and SPM importation for three of the four studied tidal cycles. Thus, Vitoria Bay is not exporting SPM to the adjacent inner shelf.

Incident wave run-up into narrow sloping bays and estuaries

Science.gov (United States)

Sinan Özeren, M.; Postacioglu, Nazmi; Canlı, Umut

2015-04-01

The problem is investigated using Carrier Greenspan hodograph transformations.We perform a quasi-one-dimensional solution well into the bay, far enough of the mouth of the bay. The linearized boundary conditions at the mouth of the bay lead to an integral equation for 2-D geometry. A semi analytical optimization method has been developed to solve this integral equation. When the wavelength of the incident wave is much larger than the width of the bay, the conformalmapping of the bay and the semi infinite sea onto upper complex plane provides a solution of the integral equation in closed form. Particular emphasis is placed on the case where the frequency of the incident waves matches the real-part of the natural frequency of the oscillation of the bay. These natural frequencies are complex because of the radiation conditions imposed at the mouth of the bay. It is found that the complex part of these natural frequencies decreases with decreasing width of the bay. Thus the trapping of the waves in narrower bays leads to a strong resonance phenomenon when the frequency of the incident wave is equal to the real part of the natural frequency.

Gulf of Mexico Integrated Science - Tampa Bay Study - Data Information Management System (DIMS)

Science.gov (United States)

Johnston, James

2004-01-01

The Tampa Bay Integrated Science Study is an effort by the U.S. Geological Survey (USGS) that combines the expertise of federal, state and local partners to address some of the most pressing ecological problems of the Tampa Bay estuary. This project serves as a template for the application of integrated research projects in other estuaries in the Gulf of Mexico. Efficient information and data distribution for the Tampa Bay Study has required the development of a Data Information Management System (DIMS). This information system is being used as an outreach management tool, providing information to scientists, decision makers and the public on the coastal resources of the Gulf of Mexico.

Radionuclides and trace elements in middle Chesapeake Bay sediments

International Nuclear Information System (INIS)

Gavrilas, M.

1988-01-01

Sediments play an important role in aquatic ecology by serving as a repository for radioactive substances and for soluble chemical pollutants that they may transport over considerable distances and may pass to a higher trophic level by way of bottom-feeding biota. The Chesapeake Bay is a moderately stratified, drowned river valley estuary. The oscillatory flood and ebb of the tidal currents are the most obvious motions in the bay and its tributary estuaries. It is considered that the distribution of most of the pollutants, once diluted by the mixing action of the tidal flow, remains relatively constant for many miles up and down the bay. This paper documents the present status of the radioactivity and of trace elements in sediment samples collected in March 1986 from and extended area around the Calvert Cliffs Nuclear Power Plant

Estuary 2100 Project, Phase 2: Building Partnerships for Resilient Watersheds

Science.gov (United States)

Information about the SFBWQP Estuary 2100 Project, Phase 2: Building Partnerships for Resilient Watersheds, part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquat

Relationships among cytochromes P450 and dioxin equivalents in pipping heron embryos from Virginia, the Great Lakes and San Francisco Bay

Science.gov (United States)

Rattner, B.A.; Hatfield, J.S.; Melancon, M.J.; Custer, T.W.; Tillett, D.E.

1993-01-01

Pipping black-crowned night-heron (Nycticorax nycticorax) embryos were collected from undisturbed (Chincoteague National Wildlife Refuge, VA) and industrialized (Cat Island, Green Bay, WI; San Francisco Bay, CA) locations. Hepatic P450 associated monooxygenases (AHH, EROD, BROD, ECOD) and P450 proteins (CYP1A, CYP2B) were induced up to 85-fold, and were associated with burdens of total PCBs and 11 AHH-active PCB congeners. Dioxin equivalents (TCDD-EQs) of sample extracts, derived by bioassay (H4I1E rat hepatoma cell) and mathematically (product of PCB congener concentration and relative TCDD potency), revealed greatest TCDD-EQs in Cat Island samples. TCDD-EQs were associated with P450s, especially BROD, EROD and CYP1A (r2 = 0.35 to 0.66). TCDD-EQs derived by bioassay were highly correlated with TCDD-EQs derived mathematically (r2 = 0.58 to 0.67) . Multiple regressions were also performed to investigate relationships among P450s and PCB congeners. In summary, these data demonstrate that hepatic P450s of heron embryos are biomarkers of exposure to dioxin-like compounds and provide further evidence that this species has considerable value for assessing wetland and estuarine contamination.

Historical occurrence of coho salmon (Oncorhynchus kisutch) in streams of the Santa Cruz Mountain region of California: response to an Endangered Species Act petition to delist coho salmon south of San Francisco Bay

Science.gov (United States)

Brian C. Spence; Walter G. Duffy; John Carlos Garza; Bret Harvey; Susan M. Sogard; Laurie A. Weitkamp; Thomas H. Williams; David A. Boughton

2011-01-01

In November 2003, the National Marine Fisheries Service received a petition from Homer T. McCrary to redefine the southern extent of the Central California Coast Coho Salmon Evolutionarily Significant Unit (CCC Coho Salmon ESU) to exclude populations that spawn in coastal watersheds south of the entrance to San Francisco Bay (i.e., the Golden Gate). The petitioner’s...

Preliminary maps of Quaternary deposits and liquefaction susceptibility, nine-county San Francisco Bay region, California: a digital database

Science.gov (United States)

Knudsen, Keith L.; Sowers, Janet M.; Witter, Robert C.; Wentworth, Carl M.; Helley, Edward J.; Nicholson, Robert S.; Wright, Heather M.; Brown, Katherine H.

2000-01-01

This report presents a preliminary map and database of Quaternary deposits and liquefaction susceptibility for the nine-county San Francisco Bay region, together with a digital compendium of ground effects associated with past earthquakes in the region. The report consists of (1) a spatial database of fivedata layers (Quaternary deposits, quadrangle index, and three ground effects layers) and two text layers (a labels and leaders layer for Quaternary deposits and for ground effects), (2) two small-scale colored maps (Quaternary deposits and liquefaction susceptibility), (3) a text describing the Quaternary map, liquefaction interpretation, and the ground effects compendium, and (4) the databse description pamphlet. The nine counties surrounding San Francisco Bay straddle the San Andreas fault system, which exposes the region to serious earthquake hazard (Working Group on California Earthquake Probabilities, 1999). Much of the land adjacent to the Bay and the major rivers and streams is underlain by unconsolidated deposits that are particularly vulnerable to earthquake shaking and liquefaction of water-saturated granular sediment. This new map provides a modern and regionally consistent treatment of Quaternary surficial deposits that builds on the pioneering mapping of Helley and Lajoie (Helley and others, 1979) and such intervening work as Atwater (1982), Helley and others (1994), and Helley and Graymer (1997a and b). Like these earlier studies, the current mapping uses geomorphic expression, pedogenic soils, and inferred depositional environments to define and distinguish the map units. In contrast to the twelve map units of Helley and Lajoie, however, this new map uses a complex stratigraphy of some forty units, which permits a more realistic portrayal of the Quaternary depositional system. The two colored maps provide a regional summary of the new mapping at a scale of 1:275,000, a scale that is sufficient to show the general distribution and relationships of

A note on the comparative turbidity of some estuaries of the Americas

Science.gov (United States)

Uncles, R.J.; Smith, R.E.

2005-01-01

Field data from 27 estuaries of the Americas are used to show that, in broad terms, there is a large difference in turbidity between the analyzed east and west-coast estuaries and that tidal range and tidal length have an important influence on that turbidity. Generic, numerical sediment-transport modeling is used to illustrate this influence, which exists over a range of space scales from, e.g., the Rogue River Estuary (few km, few mg l-1) to the Bay of Fundy (hundreds of km, few g l-1). The difference in Pacific and Atlantic seaboard estuarine turbidity for the analyzed estuaries is ultimately related to the broad-scale geomorphology of the two continents.

Evolution of mid-Atlantic coastal and back-barrier estuary environments in response to a hurricane: Implications for barrier-estuary connectivity

Science.gov (United States)

Miselis, Jennifer L.; Andrews, Brian D.; Nicholson, Robert S.; Defne, Zafer; Ganju, Neil K.; Navoy, Anthony S.

2016-01-01

Assessments of coupled barrier island-estuary storm response are rare. Hurricane Sandy made landfall during an investigation in Barnegat Bay-Little Egg Harbor estuary that included water quality monitoring, geomorphologic characterization, and numerical modeling; this provided an opportunity to characterize the storm response of the barrier island-estuary system. Barrier island morphologic response was characterized by significant changes in shoreline position, dune elevation, and beach volume; morphologic changes within the estuary were less dramatic with a net gain of only 200,000 m3 of sediment. When observed, estuarine deposition was adjacent to the back-barrier shoreline or collocated with maximum estuary depths. Estuarine sedimentologic changes correlated well with bed shear stresses derived from numerically simulated storm conditions, suggesting that change is linked to winnowing from elevated storm-related wave-current interactions rather than deposition. Rapid storm-related changes in estuarine water level, turbidity, and salinity were coincident with minima in island and estuarine widths, which may have influenced the location of two barrier island breaches. Barrier-estuary connectivity, or the transport of sediment from barrier island to estuary, was influenced by barrier island land use and width. Coupled assessments like this one provide critical information about storm-related coastal and estuarine sediment transport that may not be evident from investigations that consider only one component of the coastal system.

Morphodynamic evolution of Laida beach (Oka estuary, Urdaibai Biosphere Reserve, southeastern Bay of Biscay) in response to supratidal beach nourishment actions

Science.gov (United States)

Monge-Ganuzas, M.; Gainza, J.; Liria, P.; Epelde, I.; Uriarte, A.; Garnier, R.; González, M.; Nuñez, P.; Jaramillo, C.; Medina, R.

2017-12-01

Laida beach, located at the Oka estuary mouth (Urdaibai Biosphere Reserve) in the southeastern region of the Bay of Biscay, suffered the impact of a severe succession of storms during the first months of 2014. As a result of the erosion induced by these events, the beach lost its supratidal zone almost completely. The absence of a supratidal beach generated an impact on the recreational use of the beach during the summer 2014, and represented a potential impact for the coming summer 2015. Furthermore, it resulted in an overexposure and damage of adjacent infrastructures due to impinging strong waves. Therefore, the competent authorities, in coordination, decided to take action in order to nourish the supratidal zone of this beach. The solution adopted combined two different actions. The first one accomplished in spring of 2015, consisted in the mobilization of 44,800 m3 of sand from an area of 35,200 m2 equal to the 7% of the intertidal zone of Laida beach interpreted as the existing surface between the average low and high tidal limits, to the zone next to the eastern rocky beach contour. This action successfully resulted in an increase of the supratidal beach for the entire summer 2015 without negatively perturbing the morphological system. The second action was somewhat experimental and consisted in the mechanical plough of the previously existing intertidal low-amplitude ridges with the aim of increasing the sand transport toward the supratidal beach. Although this action did not lead to the increase of the supratidal beach, it seems to have resulted in an acceleration of the natural onshore migration of the bars. The objective of this contribution is to describe the morphodynamical response of the estuarine mouth after the performed actions with special emphasis on the evolution of extracted sites and the supratidal Laida beach area. The information here presented represents an innovative step in the understanding of the complex mechanisms driving the

Effects of small-scale hydrogeologic heterogeneity on submarine groundwater discharge (SGD) dynamics in river dominated estuaries: example of Mobile Bay, Alabama

Science.gov (United States)

Montiel, D.; Dimova, N.

2017-12-01

Submarine groundwater discharge (SGD) is known to be an important pathway for nutrients and dissolved constituents in estuarine environments worldwide. Despite its limited contribution to the total fresh water flux to the ocean (5 - 10 %), SGD-derived material loadings can rival riverine inputs. Therefore, a good understanding of the coastal hydrogeology and subsequent SGD dynamics is crucial to further investigate constituent fluxes and its implications on small and large scale coastal ecosystems. We evaluated SGD in Mobile Bay (Alabama), the fourth largest estuary in the US, using a combination of radiotracer techniques (223Ra, 226Ra, and 222Rn), stable isotopes (δ 18O and δ 2H), geophysical surveys (continuous resistivity profiling (CRP) and electrical resistivity tomography (ERT)), and seepage meters during three consecutive years. A detailed examination of the entire shoreline of Mobile Bay using CRP, ERT imaging, and multiple sediment cores collection unveiled a heterogeneous (horizontal and vertical) distribution of the surficial coastal aquifer. This was reflected and confirmed by groundwater tracer measurements and direct measurements of SGD in the coastal zone. We found that SGD occurs mainly in the northeast section of Mobile Bay with a total flux that ranged between 0.9 and 13 × 105 m3 d-1 during dry and wet periods, which represents 0.4 - 2 % of the total fresh water inputs into the Bay. While total SGD is insignificant when accounting the whole water budget of Mobile Bay, we found that small-scale geology variations produce groundwater flow preferential pathways in particular areas where SGD inputs play an important role in the water and nutrient budgets.

Composition and temporal patterns of larval fish communities in Chesapeake and Delaware Bays

Directory of Open Access Journals (Sweden)

Filipe Ribeiro

2015-11-01

Full Text Available Comparing larval fish assemblages in different estuaries provides insights about the coastal distribution of larval populations, larval transport, and adult spawning locations (Ribeiro et al. 2015. We simultaneously compared the larval fish assemblages entering two Middle Atlantic Bight (MAB estuaries (Delaware Bay and Chesapeake Bay, USA through weekly sampling from 2007 to 2009. In total, 43 taxa (32 families and 36 taxa (24 families were collected in Delaware and Chesapeake Bays, respectively. Mean taxonomic diversity, mean richness, and evenness were generally lower in Delaware Bay. Communities of both bays were dominated by Anchoa spp., Gobiosoma spp., Micropogonias undulatus, and Brevoortia tyrannus; Paralichthys spp. was more abundant in Delaware Bay and Microgobius thalassinus was more abundant in Chesapeake Bay. Inter-annual variation in the larval fish communities was low at both sites, with a relatively consistent composition across years, but strong seasonal (intra-annual variation in species composition occurred in both bays. Two groups were identified in Chesapeake Bay: a ‘winter’ group dominated by shelf-spawned species (e.g. M. undulatus and a ‘summer’ group comprising obligate estuarine species and coastal species (e.g. Gobiosoma spp. and Cynoscion regalis, respectively. In Delaware Bay, 4 groups were identified: a ‘summer’ group of mainly obligate estuarine fishes (e.g. Menidia sp. being replaced by a ‘fall’ group (e.g. Ctenogobius boleosoma and Gobionellus oceanicus; ‘winter’ and ‘spring’ groups were dominated by shelf-spawned (e.g. M. undulatus and Paralichthys spp. and obligate estuarine species (e.g. Leiostomus xanthurus and Pseudopleuronectes americanus, respectively. This study demonstrates that inexpensive and simultaneous sampling in different estuaries provides important insights into the variability in community structure of fish assemblages at large spatial scales.

Use of dissolved inorganic carbon isotopes to track photosynthesis, respiration, and nitrification along a 56 mile transect in the Sacramento River and San Francisco Bay

Science.gov (United States)

Silva, S. R.; Kendall, C.; Peek, S.; Young, M. B.

2013-12-01

A decline in phytoplankton stocks in the San Francisco Bay and Delta is thought to contribute to the pelagic organism decline observed over the past two decades. One factor controlling phytoplankton growth rate is the availability of nutrients. Although there is an excess of nutrients in the Bay and Delta, the type and relative abundance of nutrients is critical to phytoplankton growth. To evaluate the response of phytoplankton to nutrient sources and to better understand phytoplankton dynamics downstream, we tested the hypothesis that the δ13C values of dissolved inorganic carbon (DIC) along with conventional water chemistry analyses will record events such as increased nitrification (related to the Sacramento River Wastewater Treatment Plant ammonium input) and algal blooms, and reflect the balance between photosynthesis and bacterial respiration. Multiple parameters affect [DIC] and its δ13C, including DIC sources, pH, and biological processes. Consumption of CO2 by phytoplankton during photosynthesis and by autotrophic bacteria during nitrification both result in increases in δ13C-DIC. However, photosynthesis and nitrification have very different relationships to chlorophyll and nutrient concentrations. The balance between heterotrophic bacterial respiration and photosynthesis should be reflected in trends in DIC, nutrient, and chlorophyll concentration, and δ13C-DIC. The δ13C of DIC should also be reflected in the δ13C of phytoplankton with approximately a 20 per mil fractionation. Significant deviation in the fractionation factor may indicate local variations in growth rate, nutrient availability, or speciation. Combined, these parameters should provide a gauge of the relative importance of the above mentioned processes. To test this hypothesis, we collected 19 water samples per cruise between July 2012 and July 2013 along a 56 mile transect between Rio Vista on the Sacramento River and San Francisco Bay near Angel Island during 8 cruises on the USGS RV

Phytoplankton and nutrient dynamics in Winyah Bay, SC.

Science.gov (United States)

Boneillo, G. E.; Brooks, S. S.; Brown, S. L.; Woodford, K. M.; Wright, C. R.

2016-02-01

Winyah Bay is a coastal plain estuary located in South Carolina that has been classified for a moderate risk of Eutrophication by NOAA. Winyah Bay receives freshwater input from four rivers, the Waccamaw, Sampit, Black, and Pee Dee Rivers. The Waccamaw, Sampit and Black River are blackwater systems that discharge elevated amounts of colored dissolved organic matter. During the summer and fall of 2015, bioassay experiments were performed to simultaneously examine both light and nutrient (nitrogen & phosphate) limitation throughout Winyah Bay. Sampling stations near the mouth of the Waccamaw and Sampit Rivers showed that phytoplankton were light limited in the late summer instead of nutrient limited. These stations were located in the industrialized area of the bay and typically had the highest nutrient concentrations and highest turbidity, with Secchi depths typically less than 0.5 meters. Results indicated that phytoplankton may be nitrogen limited near the mouth of Winyah Bay, where nutrient concentrations and turbidity were observed to be lower than locations further upstream. There was also an observed dissolved oxygen and pH gradient during the summer of 2015. Dissolved oxygen levels less than 4.0 mg/L were routinely observed near the industrialized head of the estuary and corresponded with lower pH values.

Highest PBDE levels (max 63 ppm) yet found in biota measured in seabird eggs from San Francisco Bay

Energy Technology Data Exchange (ETDEWEB)

She, J.; Holden, A.; Tanner, M.; Sharp, M.; Hooper, K. [Department of Toxic Substances Control, Berkeley, CA (United States). Hazardous Materials Lab.; Adelsbach, T. [Environmental Contaminants Division, Sacramento Fish and Wildlife Office, US Fish and Wildlife Service, Sacramento, CA (United States)

2004-09-15

High levels of polybrominated diphenylethers (PBDEs) have been found in humans and wildlife from the San Francisco Bay Area, with levels in women among the highest in the world, and levels in piscivorous seabird eggs at the ppm level. Seabirds are useful for monitoring and assessing ecosystem health at various times and places because they occupy a high trophic level in the marine food web, are long-lived, and are generally localized near their breeding and non-breeding sites. In collaboration with the US Fish and Wildlife Services (USFWS), we are carrying out a three-year investigation of dioxin, PCB and PBDE levels in eggs from fish-eating seabirds. Year 1 (2002) PBDE measurements from 73 bird eggs were reported at Dioxin2003. Year 2 (2003) PBDE measurements from 45 samples are presented in this report. The highest PBDE level measured in eggs was 63 ppm, lipid, which is the highest PBDE level, yet reported in biota.

Wind Wave Behavior in Fetch and Depth Limited Estuaries

Science.gov (United States)

Karimpour, Arash; Chen, Qin; Twilley, Robert R.

2017-01-01

Wetland dominated estuaries serve as one of the most productive natural ecosystems through their ecological, economic and cultural services, such as nursery grounds for fisheries, nutrient sequestration, and ecotourism. The ongoing deterioration of wetland ecosystems in many shallow estuaries raises concerns about the contributing erosive processes and their roles in restraining coastal restoration efforts. Given the combination of wetlands and shallow bays as landscape components that determine the function of estuaries, successful restoration strategies require knowledge of wind wave behavior in fetch and depth limited water as a critical design feature. We experimentally evaluate physics of wind wave growth in fetch and depth limited estuaries. We demonstrate that wave growth rate in shallow estuaries is a function of wind fetch to water depth ratio, which helps to develop a new set of parametric wave growth equations. We find that the final stage of wave growth in shallow estuaries can be presented by a product of water depth and wave number, whereby their product approaches 1.363 as either depth or wave energy increases. Suggested wave growth equations and their asymptotic constraints establish the magnitude of wave forces acting on wetland erosion that must be included in ecosystem restoration design.

Macroinvertebrate Prey Availability and Fish Diet Selectivity in Relation to Environmental Variables in Natural and Restoring North San Francisco Bay Tidal Marsh Channels

Directory of Open Access Journals (Sweden)

Emily R. Howe

2014-03-01

Full Text Available Tidal marsh wetlands provide important foraging habitat for a variety of estuarine fishes. Prey organisms include benthic–epibenthic macroinvertebrates, neustonic arthropods, and zooplankton. Little is known about the abundance and distribution of interior marsh macroinvertebrate communities in the San Francisco Estuary (estuary. We describe seasonal, regional, and site variation in the composition and abundance of neuston and benthic–epibenthic macroinvertebrates that inhabit tidal marsh channels, and relate these patterns to environmental conditions. We also describe spatial and temporal variation in diets of marsh-associated inland silverside, yellowfin goby, and western mosquitofish. Fish and invertebrates were sampled quarterly from October 2003 to June 2005 at six marsh sites located in three river systems of the northern estuary: Petaluma River, Napa River, and  the west Delta. Benthic/epibenthic macroinvertebrates and neuston responded to environmental variables related to seasonal changes (i.e., temperature, salinity, as well as those related to marsh structure (i.e., vegetation, channel edge. The greatest variation in abundance occurred seasonally for neuston and spatially for benthic–epibenthic organisms, suggesting that each community responds to different environmental drivers. Benthic/epibenthic invertebrate abundance and diversity was lowest in the west Delta, and increased with increasing salinity. Insect abundance increased during the spring and summer, while Collembolan (springtail abundance increased during the winter. Benthic/epibenthic macroinvertebrates dominated fish diets, supplemented by insects, with zooplankton playing a minor role. Diet compositions of the three fish species overlapped considerably, with strong selection indicated for epibenthic crustaceans—a surprising result given the typical classification of Menidia beryllina as a planktivore, Acanthogobius flavimanus as a benthic predator, and Gambusia

Use of Geographic Information Systems to examine cumulative impacts of development on Mobile Bay, AL and Galveston Bay, TX

International Nuclear Information System (INIS)

Rosigno, P.F.; McNiff, M.E.; Watzin, M.C.; Ji, W.

1993-01-01

Databases from Mobile Bay, Alabama and Galveston Bay, Texas were compiled using ARC/INFO Geographic Information Systems (GIS) to examine the cumulative impacts from urbanization and industrialization on these two Gulf of Mexico estuaries. The databases included information on wetland habitats, pollution sources, metal contamination, bird-nesting sites, and oyster reefs, among others. A series of maps were used to represent the impacts within and between each ecosystem. These two estuaries share many similarities in the types of developmental pressures that each experience. However, difference in the magnitude of industrial activity, pollution loading, and urban growth coupled with distinct hydrodynamic and geochemical differences in sediment mineralogy, freshwater inflows and salinity regimens results in differing responses. With growing human population and extensive oil and gas development, the demands on Galveston Bay are quite different than those placed on Mobile Bay which has lower growth and less extensive oil and gas infrastructure. Mobile Bay tends to retain whatever contamination enters into the system because of the high levels of clay and organic carbon found in its sediment. Some of these chemicals bioaccumulate, posing an extra risk to natural resources. Geographic Information Systems provide natural resource managers with the technology to manage complex databases. The analytical and mapping capabilities of GIS can be used to consider cumulative effects in a regional context and to develop plans to protect ecologically sensitive areas

Modeling fates and impacts for bio-economic analysis of hypothetical oil spill scenarios in San Francisco Bay

International Nuclear Information System (INIS)

French McCay, D.; Whittier, N.; Sankaranarayanan, S.; Jennings, J.; Etkin, D.S.

2002-01-01

The oil spill risks associated with four submerged rock pinnacles near Alcatraz Island in San Francisco Bay are being evaluated by the United States Army Corps of Engineers. Oil spill modeling has been conducted for a hypothetical oil spill to determine biological impacts, damages to natural resources and response costs. The scenarios are hypothetical vessel grounding on the pinnacles. The SIMAP modeling software by the Applied Science Associates was used to model 3 spill sizes (20, 50 and 95 percentile by volume) and 4 types of oil (gasoline, diesel, heavy fuel oil, and crude oil). The frequency distribution of oil fates and impacts was determined by first running each scenario in stochastic mode. The oil fates and biological effects of the spills were the focus of this paper. It was shown that diesel and crude oil spills would have greater impacts in the water column than heavy fuel or gasoline because gasoline is more volatile and less toxic and because heavy oil spills would be small in volume. It was determined that the major impacts and damage to birds would be low due to the high dilution potential of the bay. It was also noted that dispersants would be very effective in reducing impacts on wildlife and the shoreline. These results are being used to evaluate the cost-benefit analysis of removing the rocks versus the risk of an oil spill. The work demonstrates a statistically quantifiable method to estimate potential impacts that could be used in ecological risk assessment and cost-benefit analysis. 15 refs., 13 tabs., 11 figs

Willapa Bay, Washington Benthic Habitats 1995 Biotic

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

Willapa Bay, Washington Benthic Habitats 1995 Geoform

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

Willapa Bay, Washington Benthic Habitats 1995 Substrate

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

Sociodemographic Factors Associated With Trans*female Youth's Access to Health Care in the San Francisco Bay Area.

Science.gov (United States)

Johns, Elizabeth A; Jin, Harry; Auerswald, Colette L; Wilson, Erin C

2017-08-01

Trans*female youth (TFY) are an underserved population at risk for a variety of poor health outcomes, in part related to barriers to accessing health and mental health care. We conducted a secondary analysis of data collected with 250 TFY aged 16-24 years in the San Francisco Bay Area from 2012 to 2014. Logistic regression was used to test associations between sociodemographic variables and barriers to gender identity-based medical and mental health care. Having a history of unstable housing was associated with significantly higher odds of problems accessing both medical care (odds ratio: 2.16, 95% confidence interval: 1.12-4.13) and mental health care due to gender identity (odds ratio 2.65, 95% confidence interval: 1.08-6.45). Conversely, identifying as genderqueer/genderfluid, Latina, or living in dependent housing was associated with access to either medical or mental health care. Interventions are needed to address housing and discrimination barring access to health care among TFY. Copyright © 2017 Society for Adolescent Health and Medicine. Published by Elsevier Inc. All rights reserved.

Variation in tidal wetland plant diversity and composition within and among coastal estuaries: assessing the relative importance of environmental gradients

Science.gov (United States)

Question: Does wetland plant composition vary more by estuarine type (differentiated by the degree of riverine versus oceanic influence) or habitat type within estuaries (defined by US National Wetlands Inventory [NWI] marsh classes)? Location: Oregon estuaries: Netarts Bay, ...

Evaluating Aquatic Life Benefits of Reducing Nutrient Loading to Remediate Episodic and Diel Cycling Hypoxia in a Shallow Hypereutrophic Estuary

Science.gov (United States)

Theoretical linkages between excess nutrient loading, nutrient-enhanced community metabolism (i.e., production and respiration), and hypoxia in estuaries are well-understood. In seasonally-stratified estuaries and coastal systems (e.g., Chesapeake Bay, northern Gulf of Mexico), h...

Rainfall Estimation and Performance Characterization Using an X-band Dual-Polarization Radar in the San Francisco Bay Area

Science.gov (United States)

Cifelli, R.; Chen, H.; Chandra, C. V.

2016-12-01

The San Francisco Bay area is home to over 5 million people. In February 2016, the area also hosted the NFL Super bowl, bringing additional people and focusing national attention to the region. Based on the El Nino forecast, public officials expressed concern for heavy rainfall and flooding with the potential for threats to public safety, costly flood damage to infrastructure, negative impacts to water quality (e.g., combined sewer overflows) and major disruptions in transportation. Mitigation of the negative impacts listed above requires accurate precipitation monitoring (quantitative precipitation estimation-QPE) and prediction (including radar nowcasting). The proximity to terrain and maritime conditions as well as the siting of existing NEXRAD radars are all challenges in providing accurate, short-term near surface rainfall estimates in the Bay area urban region. As part of a collaborative effort between the National Oceanic and Atmospheric Administration (NOAA) Earth System Research Laboratory, Colorado State University (CSU), and Santa Clara Valley Water District (SCVWD), an X-band dual-polarization radar was deployed in Santa Clara Valley in February of 2016 to provide support for the National Weather Service during the Super Bowl and NOAA's El Nino Rapid Response field campaign. This high-resolution radar was deployed on the roof of one of the buildings at the Penitencia Water Treatment Plant. The main goal was to provide detailed precipitation information for use in weather forecasting and assists the water district in their ability to predict rainfall and streamflow with real-time rainfall data over Santa Clara County especially during a potentially large El Nino year. The following figure shows the radar's coverage map, as well as sample reflectivity observations on March 06, 2016, at 00:04UTC. This paper presents results from a pilot study from February, 2016 to May, 2016 demonstrating the use of X-band weather radar for quantitative precipitation

After the I-Hotel : Material, Cultural, and Affective Geographies of Filipino San Francisco

OpenAIRE

Tagle, Thea Quiray

2015-01-01

This dissertation traces the cultural and economic trajectories of Filipino migration to, settlement in, and displacement from the San Francisco Bay Area from the 1960s through the present moment as represented in the work of local poets, visual artists, and performers. After the I-Hotel argues that the shifting representations of urban and suburban space over this time period not only reveal the structural forces behind the displacement of old and new Filipino migrants in the Bay Area, but a...

Estuary 2100 Project, Phase 1: Resilient Watersheds for a Changing Climate

Science.gov (United States)

Information about the SFBWQP Estuary 2100 Project, Phase 1: Resilient Watersheds for a Changing Climate , part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

A Global Talent Magnet: How a San Francisco/Bay Area Global Higher Education Hub Could Advance California's Comparative Advantage in Attracting International Talent and Further Build US Economic Competitiveness. Research & Occasional Paper Series: CSHE.9.11

Science.gov (United States)

Douglass, John; Edelstein, Richard; Hoareau, Cecile

2011-01-01

During the 2009-10 academic year international students generated more than $18.8 billion in net income into the US economy. California alone had nearly 100,000 international students with an economic impact of nearly $3.0 billion. In this paper, we outline a strategy for the San Francisco/Bay Area to double the number of international students…

Survival of postfledging Forster's terns in relation to mercury exposure in San Francisco Bay

Science.gov (United States)

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Takekawa, John Y.; Iverson, S.A.

2008-01-01

We examined factors influencing mercury concentrations in 90 fledgling Forster's terns (Sterna forsteri) and evaluated whether mercury influenced postfledging survival in San Francisco Bay, California. Mercury concentrations (??SE) in chicks 21-29 days old (just before fledging) were 0.33 ?? 0.01 ??g g-1 ww for blood and 6.44 ?? 0.28 ??g g -1 fw for breast feathers. Colony site had an overriding influence on fledgling contamination, however hatching date and age also affected blood, but not feather, mercury concentrations. Blood mercury concentrations decreased by 28% during the 50-day hatching period and increased with chick age by 30% during the last week prior to fledging. Using radio-telemetry, we calculated that cumulative survival during the 35-day postfledging time period was 0.81 ?? 0.09 (SE). Postfledging survival rates increased with size-adjusted mass, and cumulative survival probability was 61% lower for terns with the lowest, compared to the highest, observed masses. Conversely, survival was not influenced by blood mercury concentration, time since fledging, sex, or hatch date. Mercury concentrations in breast feathers of fledglings found dead at nesting colonies also were no different than those in live chicks. Our results indicate that colony site, hatching date, and age influenced mercury concentrations in fledgling Forster's terns, but that mercury did not influence postfledging survival. ?? 2008 Springer Science+Business Media, LLC.

Evaluating tidal marsh sustainability in the face of sea-level rise: a hybrid modeling approach applied to San Francisco Bay.

Directory of Open Access Journals (Sweden)

Diana Stralberg

Full Text Available Tidal marshes will be threatened by increasing rates of sea-level rise (SLR over the next century. Managers seek guidance on whether existing and restored marshes will be resilient under a range of potential future conditions, and on prioritizing marsh restoration and conservation activities.Building upon established models, we developed a hybrid approach that involves a mechanistic treatment of marsh accretion dynamics and incorporates spatial variation at a scale relevant for conservation and restoration decision-making. We applied this model to San Francisco Bay, using best-available elevation data and estimates of sediment supply and organic matter accumulation developed for 15 Bay subregions. Accretion models were run over 100 years for 70 combinations of starting elevation, mineral sediment, organic matter, and SLR assumptions. Results were applied spatially to evaluate eight Bay-wide climate change scenarios.Model results indicated that under a high rate of SLR (1.65 m/century, short-term restoration of diked subtidal baylands to mid marsh elevations (-0.2 m MHHW could be achieved over the next century with sediment concentrations greater than 200 mg/L. However, suspended sediment concentrations greater than 300 mg/L would be required for 100-year mid marsh sustainability (i.e., no elevation loss. Organic matter accumulation had minimal impacts on this threshold. Bay-wide projections of marsh habitat area varied substantially, depending primarily on SLR and sediment assumptions. Across all scenarios, however, the model projected a shift in the mix of intertidal habitats, with a loss of high marsh and gains in low marsh and mudflats.Results suggest a bleak prognosis for long-term natural tidal marsh sustainability under a high-SLR scenario. To minimize marsh loss, we recommend conserving adjacent uplands for marsh migration, redistributing dredged sediment to raise elevations, and concentrating restoration efforts in sediment-rich areas

The epidemiology and surveillance response to pandemic influenza A (H1N1) among local health departments in the San Francisco Bay Area.

Science.gov (United States)

Enanoria, Wayne T A; Crawley, Adam W; Tseng, Winston; Furnish, Jasmine; Balido, Jeannie; Aragón, Tomás J

2013-03-27

Public health surveillance and epidemiologic investigations are critical public health functions for identifying threats to the health of a community. Very little is known about how these functions are conducted at the local level. The purpose of the Epidemiology Networks in Action (EpiNet) Study was to describe the epidemiology and surveillance response to the 2009 pandemic influenza A (H1N1) by city and county health departments in the San Francisco Bay Area in California. The study also documented lessons learned from the response in order to strengthen future public health preparedness and response planning efforts in the region. In order to characterize the epidemiology and surveillance response, we conducted key informant interviews with public health professionals from twelve local health departments in the San Francisco Bay Area. In order to contextualize aspects of organizational response and performance, we recruited two types of key informants: public health professionals who were involved with the epidemiology and surveillance response for each jurisdiction, as well as the health officer or his/her designee responsible for H1N1 response activities. Information about the organization, data sources for situation awareness, decision-making, and issues related to surge capacity, continuity of operations, and sustainability were collected during the key informant interviews. Content and interpretive analyses were conducted using ATLAS.ti software. The study found that disease investigations were important in the first months of the pandemic, often requiring additional staff support and sometimes forcing other public health activities to be put on hold. We also found that while the Incident Command System (ICS) was used by all participating agencies to manage the response, the manner in which it was implemented and utilized varied. Each local health department (LHD) in the study collected epidemiologic data from a variety of sources, but only case reports

Sampling uncharted waters: Examining rearing habitat of larval Longfin Smelt (Spirinchus thaleichthys) in the upper San Francisco Estuary

Science.gov (United States)

Grimaldo, Lenny; Feyrer, Frederick; Burns, Jillian; Maniscalco, Donna

2017-01-01

The southern-most reproducing Longfin Smelt population occurs in the San Francisco Estuary, California, USA. Long-term monitoring of estuarine habitat for this species has generally only considered deep channels, with little known of the role shallow waters play in supporting their early life stage. To address the need for focused research on shallow-water habitat, a targeted study of Longfin Smelt larvae in littoral habitat was conducted to identify potential rearing habitats during 2013 and 2014. Our study objectives were to (1) determine if larval densities vary between littoral habitats (tidal slough vs. open-water shoal), (2) determine how larval densities in littoral habitats vary with physicochemical and biological attributes, (3) determine if larval densities vary between littoral habitats and long-term monitoring channel collections, and (4) determine what factors predict larval rearing distributions from the long-term monitoring channel collections. Larval densities did not vary between littoral habitats but they did vary between years. Water temperature, salinity, and chlorophyll a were found important in predicting larval densities in littoral habitats. Larval densities do not vary between littoral and channel surveys; however, the analysis based on channel data suggests that Longfin Smelt are hatching and rearing in a much broader region and under higher salinities (∼2–12 psu) than previously recognized. Results of this study indicate that conservation efforts should consider how freshwater flow, habitat, climate, and food webs interact as mechanisms that influence Longfin Smelt recruitment in estuarine environments.

HEAVY METAL CONTENTS IN MARINE SEDIMENTS AND SEAWATER AT TOTOK BAY AREA, NORTH SULAWESI

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Delyuzar Ilahude

2017-07-01

Full Text Available The study area is located in north-eastern part of Tomini Bay, approximately 80 km south of Manado city, North Sulawesi. This area is closed to submarine tailing disposal system in Buyat Bay. Five marine sediment samples and four water samples from seawater and dig wells have been used for heavy metals (Hg, As, CN analyses by using Atomic Absorption Spectrometry (AAS. This study is a part of research conducted by Marine Geological Institute of Indonesia on morphological changes of seabed in the Totok Bay. The result shows that concentration of mercury (Hg in water samples taken from Ratatotok estuary is higher than standards stipulated Government Regulation (Peraturan Pemerintah/PP No. 82/2001. Meanwhile, concentration of arsenic (As is almost reaching its standard threshold, and conversely cyanide (CN concentration is low. This value of mercury (Hg concentration taken from Ratatotok estuary is much higher than water samples from of Buyat Bay estuary. Significant concentration of mercury (Hg analysed from those particular sampling sites indicated high mercury contamination. Therefore, further examination on ground water of dig wells is necessary, especially for mercury analysis (Hg. Furthermore, comparing the formerly obtained data of mercury concentration in the sediment, this particular study concludes that the sediments in the Totok Bay had contaminated by mercury from gold-processing of illegal mining.

Spill management strategy for the Chesapeake Bay

International Nuclear Information System (INIS)

Butler, H.L.; Chapman, R.S.; Johnson, B.H.

1990-01-01

The Chesapeake Bay Program is a unique cooperative effort between state and Federal agencies to restore the health and productivity of America's largest estuary. To assist in addressing specific management issues, a comprehensive three-dimensional, time-varying hydrodynamic and water quality model has ben developed. The Bay modeling strategy will serve as an excellent framework for including submodules to predict the movement, dispersion, and weathering of accidental spills, such as for petroleum products or other chemicals. This paper presents sample results from the Bay application to illustrate the success of the model system in simulating Bay processes. Also, a review of model requirements for successful spill modeling in Chesapeake Bay is presented. Recommendations are given for implementing appropriate spill modules with the Bay model framework and establishing a strategy for model use in addressing management issues

Critical Assessment of the Delta Smelt Population in the San Francisco Estuary, California

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William A Bennett

2005-09-01

Full Text Available The delta smelt (Hypomesus transpacificus is a small and relatively obscure fish that has recently risen to become a major focus of environmental concern in California. It was formally abundant in the low-salinity and freshwater habitats of the northeastern San Francisco Estuary, but is now listed as threatened under the Federal and California State Endangered Species Acts. In the decade following the listings scientific understanding has increased substantially, yet several key aspects of its biology and ecological relationships within the highly urbanized estuary remain uncertain. A key area of controversy centers on impacts to delta smelt associated with exporting large volumes of freshwater from the estuary to supply California’s significant agricultural and urban water demands. The lack of appropriate data, however, impedes efforts to resolve these issues and develop sound management and restoration alternatives. Delta smelt has an unusual life history strategy relative to many fishes. Some aspects of its biology are similar to other coastal fishes, particularly salmonids. Smelts in the genus, Hypomesus, occur throughout the Pacific Rim, have variable life history strategies, and are able to adapt rapidly to local environments. By comparison, delta smelt has a tiny geographic range being confined to a thin margin of low salinity habitat in the estuary. It primarily lives only a year, has relatively low fecundity, and pelagic larvae; life history attributes that are unusual when compared with many fishes worldwide. A small proportion of delta smelt lives two years. These individuals are relatively highly fecund but are so few in number that their reproductive contribution only may be of benefit to the population after years of extremely poor spawning success and survival. Provisioning of reproductive effort by these older fish may reflect a bet-hedging tactic to insure population persistence. Overall, the population persists by maximizing

Instrument packages to study long-term sediment transport processes in a shallow bay

Science.gov (United States)

Strahle, William J.; Martini, Marinna A.; Davis, Ray E.

1994-01-01

Pressure and near-surface and near-bottom measurements of current, temperature, salinity and light transmission were required in Mobile Bay, a 3 m deep estuary on the Gulf of Mexico. This environment presented several obstacles to obtaining long term observations. Boat traffic, soft estuary bottom, heavy biofouling, rapid sample rates and large data storage were overcome by using instrumentation techniques that are applicable to other estuary systems. Nearly two years of continuous data was collected.

Nutrient Budgets and Management Actions in the Patuxent River Estuary, Maryland

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Multi-year nitrogen (N) and phosphorus (P) budgets were developed for the Patuxent River estuary, a seasonally stratified and moderately eutrophic tributary of Chesapeake Bay. Major inputs (point, diffuse, septic and direct atmospheric) were measured for 13 years during which la...

Supporting data for hydrologic studies in San Francisco Bay, California : meteorological measurements at the Port of Redwood City during 1998-2001

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Schemel, Laurence E.

2002-01-01

Meteorological data were collected during 1998-2001 at the Port of Redwood City, California, to support hydrologic studies in South San Francisco Bay. The measured meteorological variables were air temperature, atmospheric pressure, quantum flux (insolation), and four parameters of wind speed and direction: scalar mean horizontal wind speed, (vector) resultant horizontal wind speed, resultant wind direction, and standard deviation of the wind direction. Hourly mean values based on measurements at five-minute intervals were logged at the site. Daily mean values were computed for temperature, infolation, pressure, and scalar wind speed. Daily mean values for 1998-2001 are described in this report, and a short record of hourly mean values is compared to data from another near-by station. Data (hourly and daily mean) from the entire period of record (starting in April 1992) and reports describing data prior to 1998 are provided.

Seasonality in the Mesozooplankton Community of Delaware Bay, USA

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Wickline, A.; Cohen, J.

2016-02-01

Zooplankton communities in temperate estuaries undergo seasonal shifts in abundance and species composition, though the physical/biological mechanisms behind these shifts vary among systems. Delaware Bay is a well-mixed estuary on the mid-Atlantic coast with predictable seasonal variation in environmental conditions and circulation. To understand factors influencing mesozooplankton community dynamics in this system, we conducted seasonal sampling at 16 stations over the estuary's salinity range in 2014-2015. Sampling paralleled the last similar investigation into Delaware Bay zooplankton, conducted in the early 1950s. Biomass, measured as dry weight and totaled for all stations, was low in late summer and high in spring and fall. Bio-volume, measured either as displacement volume or calculated from ZooScan processing to exclude detritus, also showed a similar pattern. Across seasons, the mesozooplankton community was dominated by copepods, representing over 60% of the relative abundance at each station. Acartia tonsa was the dominant calanoid species in summer and fall, with abundances up to 7,353 ind. m-3, which is similar to the 1950s. In spring, Centropages hamatus and C. typicus were dominant at densities up to 2,550 ind. m-3 throughout the estuary, which is an increase from the 1950s. Environmental data suggest the seasonal shift in dominance from neritic Centropages to estuarine Acartia could be driven by increased stratification of the estuary during periods of high river discharge in spring, creating a two-layer system with a bottom advection current fed by the coastal ocean, bringing coastal species into the estuary. As river discharge decreases, the advection current is reduced, creating a well-mixed estuary and allowing Acartia to dominante. As river discharge is ultimately determined by precipitation, which is predicted to increase during winter with climate change in this region, the phenology of mesozooplankton species dynamics could shift as well.

Stress-based aftershock forecasts made within 24h post mainshock: Expected north San Francisco Bay area seismicity changes after the 2014M=6.0 West Napa earthquake

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Parsons, Thomas E.; Segou, Margaret; Sevilgen, Volkan; Milner, Kevin; Field, Edward; Toda, Shinji; Stein, Ross S.

2014-01-01

We calculate stress changes resulting from the M= 6.0 West Napa earthquake on north San Francisco Bay area faults. The earthquake ruptured within a series of long faults that pose significant hazard to the Bay area, and we are thus concerned with potential increases in the probability of a large earthquake through stress transfer. We conduct this exercise as a prospective test because the skill of stress-based aftershock forecasting methodology is inconclusive. We apply three methods: (1) generalized mapping of regional Coulomb stress change, (2) stress changes resolved on Uniform California Earthquake Rupture Forecast faults, and (3) a mapped rate/state aftershock forecast. All calculations were completed within 24 h after the main shock and were made without benefit of known aftershocks, which will be used to evaluative the prospective forecast. All methods suggest that we should expect heightened seismicity on parts of the southern Rodgers Creek, northern Hayward, and Green Valley faults.

Ambient Greenhouse Gas (GHG) Observations in the San Francisco Bay Area of California Using a Fixed-site Monitoring Network

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Martien, P. T.; Guha, A.; Bower, J.; Perkins, I.; Randall, S.; Young, A.; Hilken, H.; Stevenson, E.

2016-12-01

The Bay Area Air Quality Management District is the greater San Francisco Bay metropolitan area's chief air quality regulatory agency. Aligning itself with the Governor's Executive Order S-3-05, the Air District has set a goal to reduce the region's GHG emissions by 80% below 1990 levels by the year 2050. The Air District's 2016 Clean Air Plan will lay out the agency's vision and actions to put the region on a path forward towards achieving the 2050 goal while also reducing air pollution and related health impacts. The 2016 Plan has three overarching objectives: 1) develop a multi-pollutant emissions control strategy, (2) reduce population exposure to harmful air pollutants, especially in vulnerable communities, and (3) protect climate through a comprehensive Regional Climate Protection Strategy. To accomplish one of 2016 Plan's control measures (SL3 - Greenhouse Gas Monitoring and Measurement Network), the Air District has set up a long-term, ambient GHG monitoring network at four sites. The first site is located north and upwind of the urban core at Bodega Bay by the Pacific Coast. It mostly receives clean marine inflow and serves as the regional background site. The other three sites are strategically located at regional exit points for Bay Area plumes that presumably contain well-mixed GHG enhancements from local sources. CO2 and CH4are being measured continuously at the fixed-sites, along with combustion tracer CO and other air pollutants. In the longer term, the network will allow the Air District to monitor ambient concentrations of GHGs and thus evaluate the effectiveness of its policy, regulation and enforcement efforts. We present data trends from the first year of operation of the fixed-site monitoring network including monthly and seasonal patterns, diurnal variations and regional enhancements at individual sites above background concentrations. We also locate an isotopic methane instrument (Picarro, G132-i) for a short duration (a week) at each of the

Mercury contamination and effects on survival of American avocet and black-necked stilt chicks in San Francisco Bay.

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Ackerman, Joshua T; Takekawa, John Y; Eagles-Smith, Collin A; Iverson, Samuel A

2008-02-01

We evaluated whether mercury influenced survival of free-ranging American avocet (Recurvirostra americana) and black-necked stilt (Himantopus mexicanus) chicks in San Francisco Bay, California. Using radio telemetry, we radio-marked 158 avocet and 79 stilt chicks at hatching and tracked them daily until their fate was determined. We did not find strong support for an influence of in ovo mercury exposure on chick survival, despite observing a wide range of mercury concentrations in chick down feathers at hatching (0.40-44.31 microg g(-1) fw). We estimated that chick survival rates were reduced by nest monitoring. In contrast to the telemetry results, we found that mercury concentrations in down feathers of dead chicks were higher than those in randomly-sampled live chicks of similar age. However, capture site was the most important variable influencing mercury concentrations, followed by year, species, and hatching date. Although laboratory studies have demonstrated negative effects of environmentally relevant mercury concentrations on chick survival, our results concur with the small number of previous field studies that have not been able to detect reduced survival in the wild.

Seasonal and Spatial Distribution of Freshwater Flow and Salinity in the Ten Thousand Islands Estuary, Florida, 2007-2009

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Soderqvist, Lars E.; Patino, Eduardo

2010-01-01

The watershed of the Ten Thousand Islands (TTI) estuary has been substantially altered through the construction of canals and roads for the Southern Golden Gate Estates (SGGE), Barron River Canal, and U.S. 41 (Tamiami Trail). Two restoration projects designed to improve freshwater delivery to the estuary are the Picayune Strand Restoration Project, which includes the Southern Golden Gate Estates, and the Tamiami Trail Culverts Project; both are part of the Comprehensive Everglades Restoration Plan. To address hydrologic information needs critical for monitoring the effects of these restoration projects, the U.S. Geological Survey initiated a study in October 2006 to characterize freshwater outflows from the rivers, internal circulation and mixing within the estuary, and surface-water exchange between the estuary and Gulf of Mexico. The effort is conducted in cooperation with the South Florida Water Management District and complemented by monitoring performed by the Rookery Bay National Estuarine Research Reserve. Surface salinity was measured during moving boat surveys using a flow-through system that operated at planing speeds averaging 20 miles per hour. The data were logged every 10 seconds by a data recorder that simultaneously logged location information from a Global Positioning System. The major rivers, bays, and nearshore Gulf of Mexico region of the TTI area were surveyed in approximately 5 hours by two boats traversing about 200 total miles. Salinity and coordinate data were processed using inverse distance weighted interpolation to create salinity contour maps of the entire TTI region. Ten maps were created from salinity surveys performed between May 2007 and May 2009 and illustrate the dry season, transitional, and wet season salinity patterns of the estuarine rivers, inner bays, mangrove islands, and Gulf of Mexico boundary. The effects of anthropogenic activities are indicated by exceptionally low salinities associated with point discharge into the

Assessment of Potential Impact of Electromagnetic Fields from Undersea Cable on Migratory Fish Behavior

Energy Technology Data Exchange (ETDEWEB)

Klimley, A. P. [Univ. of California, Davis, CA (United States); Wyman, M. T. [Univ. of California, Davis, CA (United States); Kavet, Rob [Electric Power Research Inst. (EPRI), Palo Alto, CA (United States)

2016-09-28

submerged Geometrics magnetometers towed behind a survey vessel in four locations in the San Francisco estuary along profiles crossing the cable path. We applied basic formulas to describe magnetic field from a DC cable summed vectorially with the background geomagnetic field (in the absence of other sources that would perturb the ambient field) to derive characteristics of the cable not immediately or otherwise observable. The magnetic field profiles of 76 survey lines were regressed against the measured fields, representing eight days of measurement. Many profiles were dominated by field distortions caused by bridge structures or other submerged objects, and the cable contribution to the field was not detectable. The regressions based on fundamental principles (Biot Savart law) and the vectorial summation of cable and geomagnetic fields provide estimates of cable characteristics consistent with plausible expectations. For the second objective, detailed gradiometer survey were examined. Distortions in the earth’s main field produced by bridges across the estuary were much greater than those from the TBC. The former anomalies exceeded the latter by an order of magnitude or more. Significant numbers of tagged Chinook salmon smolts migrated past bridges, which produced strong magnetic anomalies, to the Golden Gate Bridge, where they were recorded by dual arrays of acoustic tag-detecting monitors moored in lines across the mouth of the bay. Adult green sturgeon successfully swam upstream and downstream through the estuary on the way to and from their spawning grounds. Hence, the large anomalies produced by the bridges that run perpendicular to these migration routes do not appear to present a strong barrier to the natural seasonal movement patterns of salmonid smolts and adult green sturgeon. Finally, to assess the behavioral responses by migratory Chinook salmon and green sturgeon to a high- voltage power cable - the potential impacts effect of the TBC on fishes migrating

Morphodynamics, sedimentary and anthropogenic influences in the San Vicente de la Barquera estuary (North coast of Spain)

OpenAIRE

FLOR-BLANCO, G.; FLOR, G.; PANDO, L.; ABANADES, J.

2015-01-01

The estuary of San Vicente de la Barquera (Cantabria, Spain) occupies two fluvial valleys that have incised into soft sedimentary rocks (Lower Mesozoic) and are controlled by inactive faults. These two estuary subsystems, the Escudo (main valley) and Gandarilla, share outer estuarine zones, i.e., a sandy bay and an estuary-mouth complex. The complexity of the system lies in the presence of a confining barrier formed by an aeolian dune/ beach system that is currently enclosed by a jetty, which...

Potential climate change impacts on a tropical estuary: Hilo Bay, Hawaii

Science.gov (United States)

Adolf, J.; LaPinta, J.; Marusek, J.; Pascoe, K.; Pugh, A.

2016-02-01

Hilo Bay is a tropical estuarine ecosystem on the northeast (windward) coast of Hawai`i Island that is potentially vulnerable to climate change effects mediated through elevated water temperatures and/or changing rainfall patterns that impact river and groundwater fluxes. Here, we document trends in water temperature, river flow and phytoplankton dynamics in Hilo Bay. Hilo Bay is fed by two major rivers, Wailuku and Honoli`i, both of which have shown long term declines in output over their 85 and 38 year monitoring periods (USGS), respectively. Time series of groundwater inputs to Hilo Bay do not exist, but the average estimated rate rivals that of average river inputs. Daily average Hilo Bay water temperatures have increased at a rate of 0.35 degrees C per year (p Hilo Bay water quality buoy began in 2010, with the warmest temperatures on record recorded Sept 2015. Salinity did not show a trend over this same time period. Phytoplankton showed a pronounced seasonal cycle in Hilo Bay with a long term average of 3.7 mg m-3 and dominance by diatoms that exploit the co-availability of silica and nitrate in this environment. On shorter time scales of days to Hilo Bay salinity, temperature and phytoplankton biomass. Coincidental atmospheric warming, SST warming in the adjacent North Pacific ocean, and declining river flows will likely work together to result in elevated SST in Hilo Bay if observed trends continue. The El Nino event that started this year is expected to exacerbate this warming through reduce river flow and warmer regional SST.

Phosphorus fractionation distribution in Guapimirim estuary: SE Brazil.

Science.gov (United States)

Vicente, Michel Arthur Faria; de Melo, Gustavo Vaz; Baptista Neto, José Antonio; de Oliveira, Allan Sandes

2016-01-01

The Guapimirim estuary is the main tributary of Guanabara bay and is located in the northeast portion. Although it is protected, this estuary has been experiencing strong anthropogenic pressure, which has led to changes in the natural characteristics. Large amounts of sewage are dumped into the bay through tributaries, thereby changing the water and bottom sediment quality. One of the main elements of sewage is phosphorus. Despite its importance to life, a high concentration of this nutrient in the environment can result in eutrophication. This work describes the phosphorus distribution in its different fractions in the bottom sediment at 16 stations located in the main channel of the Guapimirim estuary. These results are correlated with data on grain size, organic matter and calcium carbonate content in the bottom sediment and with physicochemical parameters of the bottom water. The grain size decreases toward the mouth of the estuary, whereas the organic matter and carbonate content increase. The salinity increases significantly at 3.5 km upstream from the mouth, where there is also a notable increase in fine sediments; the same site is the mean position of the salinity front. The temperature and pH increase in the same direction. The Pinorg-total ranges between 3.18 and 7.13 µmol g(-1), increasing toward the mouth. The same trend is observed for the other phosphorus fractions P-Ca, P-Fe and P-f.a., which range from 0.68 to 1.91, 0.79 to 1.71 and 0.03 to 0.93 µmol g(-1), respectively. The P-Ca and P-Fe fractions are the most representative in the Pinorg-total, occurring at 26.3 and 26.0 %, respectively.

Spatial and temporal variation in seagrass coverage in Southwest Florida: assessing the relative effects of anthropogenic nutrient load reductions and rainfall in four contiguous estuaries.

Science.gov (United States)

Tomasko, D A; Corbett, C A; Greening, H S; Raulerson, G E

2005-08-01

The estuaries of Tampa Bay, Sarasota Bay, Lemon Bay, and Upper Charlotte Harbor are contiguous waterbodies located within the subtropical environment of Southwest Florida. Based on an examination of rainfall data over the period of record (1916-2001) within the watersheds of these estuaries, there is no evidence for spatial differences (at the watershed level) or monotonic trends in annual rainfall. During the 1980s, nitrogen loads into Tampa Bay and Sarasota Bay (generated primarily by domestic wastewater treatment facilities) were reduced by 57% and 46%, respectively. In response, both Tampa Bay and Sarasota Bay have lower phytoplankton concentrations, greater water clarity and more extensive seagrass coverage in 2002 than in the early 1980s. As there is no evidence of a concurrent trend in rainfall during the period of 1982-2001, it is unlikely that variation in rainfall can account for the observed increase in seagrass coverage in these two bays. In contrast, seagrass coverage has remained relatively constant since the mid 1980s in Lemon Bay and Charlotte Harbor. Domestic wastewater treatment facilities are minor sources of nitrogen to Lemon Bay, and water clarity in Charlotte Harbor varies mostly as a function of dissolved organic matter and non-chlorophyll associated turbidity, not phytoplankton levels. Even in estuaries that share boundaries and are within 100 km of each other, varied responses to anthropogenic changes and natural phenomena were observed in water quality and associated seagrass extent. Resource management strategies must take into account system-specific factors-not all strategies will result in similar results in different systems.

Eutrophication influence on phytoplankton community composition in three bays on the eastern Adriatic coast

Directory of Open Access Journals (Sweden)

Mia Bužančić

2016-10-01

Full Text Available This study shows the influence of eutrophication pressure on the phytoplankton community structure, abundance and biodiversity in the investigated bays with different hydromorphological features. Šibenik Bay is a highly stratified estuary of the karstic river Krka; Kaštela Bay is a semi-enclosed coastal bay, which is influenced by the relatively small river Jadro; and Mali Ston Bay is located at the Neretva River estuary, the largest river on the eastern part of the Adriatic Sea. All of the areas are affected by urban pressure, which is reflected in the trophic status of the waters. The greatest anthropogenic influence was found in Kaštela Bay while the lowest influence was found in Mali Ston Bay. In this study, the highest biomass concentration and maximum abundance of phytoplankton were recorded at the stations under the strongest anthropogenic influence. Those stations show a dominance of abundance compared to the biomass and a dominance of opportunistic species, which is reflected in the lower biodiversity of phytoplankton community. Diatoms were the most represented group of the phytoplankton community in all three bays, followed by the dinoflagellates. Diatoms that were highlighted as significant for the difference between the bays were Skeletonema marinoi in Šibenik Bay, Leptocylindrus minimus in Kaštela Bay and the genus Chaetoceros spp. in Mali Ston Bay. Dinoflagellates were more abundant at the stations under the strongest anthropogenic influence, and most significant were Prorocentrum triestinum in Kaštela Bay and Gymnodinium spp. in Šibenik Bay and Mali Ston Bay.

The benthic regeneration of N and P in the Great Brak estuary ...

African Journals Online (AJOL)

2015-10-05

Oct 5, 2015 ... modification of coastal environments, in particular the rise in inorganic and .... estuary is artificially breached at 2 m mean sea level (MSL) in order to prevent the ...... in a shallow subtropical bay in Florida. Mar. Ecol. Prog. Ser.

Meteorological, biological, and hydrographic data collected from Middle Bay Lighthouse in Mobile Bay, AL from 05/23/2005 - 12/31/2013 (NODC Accession 0117376)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Abstract: Dauphin Island Sea Lab and the Mobile Bay National Estuary Program have partnered with the University of South Alabama, the Alabama Department of...

Recovery of Data from the Narragansett Bay Project, 1985-1992: User's Manual and CD-ROM

Science.gov (United States)

Data from the 1985-1992 era of the Narragansett Bay Project, an estuary of the National Estuary Program, were recovered from numerous storage media, updated to modern software, and burned to CD-ROM. The data will be used by, among others, EPA researchers working on long-term tren...

Synoptic volumetric variations and flushing of the Tampa Bay estuary

Science.gov (United States)

Wilson, M.; Meyers, S. D.; Luther, M. E.

2014-03-01

Two types of analyses are used to investigate the synoptic wind-driven flushing of Tampa Bay in response to the El Niño-Southern Oscillation (ENSO) cycle from 1950 to 2007. Hourly sea level elevations from the St. Petersburg tide gauge, and wind speed and direction from three different sites around Tampa Bay are used for the study. The zonal (u) and meridional (v) wind components are rotated clockwise by 40° to obtain axial and co-axial components according to the layout of the bay. First, we use the subtidal observed water level as a proxy for mean tidal height to estimate the rate of volumetric bay outflow. Second, we use wavelet analysis to bandpass sea level and wind data in the time-frequency domain to isolate the synoptic sea level and surface wind variance. For both analyses the long-term monthly climatology is removed and we focus on the volumetric and wavelet variance anomalies. The overall correlation between the Oceanic Niño Index and volumetric analysis is small due to the seasonal dependence of the ENSO response. The mean monthly climatology between the synoptic wavelet variance of elevation and axial winds are in close agreement. During the winter, El Niño (La Niña) increases (decreases) the synoptic variability, but decreases (increases) it during the summer. The difference in winter El Niño/La Niña wavelet variances is about 20 % of the climatological value, meaning that ENSO can swing the synoptic flushing of the bay by 0.22 bay volumes per month. These changes in circulation associated with synoptic variability have the potential to impact mixing and transport within the bay.

Grazer Functional Roles, Induced Defenses, and Indirect Interactions: Implications for Eelgrass Restoration in San Francisco Bay

Directory of Open Access Journals (Sweden)

Jeffrey T. Lewis

2014-11-01

Full Text Available Understanding the individual and interactive roles of consumer species is more than academic when the host plant is a subject of intense conservation interest. In a mesocosm experiment, we compared effects of common invertebrate grazers in San Francisco Bay seagrass (Zostera marina, eelgrass beds, finding that some species (a native opisthobranch, Phyllaplysia taylori; a native isopod, Idotea resecata; and an introduced gastropod, Ilyanassa obsoleta enhanced eelgrass growth through removal of epiphytic algae, as is often predicted for small invertebrate grazers on seagrasses, while one (an introduced caprellid amphipod, Caprella cf. drepanochir had neutral effects. In contrast, the putatively-introduced gammaridean amphipod, Ampithoe valida, had strong negative effects on eelgrass (in addition to epiphytes through consumption, as we had previously observed in the field during restoration programs. We tested whether other common grazer species could influence the effects of the eelgrass-grazing Ampithoe, and found that Idotea induced production of phenolic compounds and limited eelgrass damage by Ampithoe, without affecting Ampithoe abundance. These results have implications for restoration strategies, and contribute to a growing awareness of the importance of trait-mediated indirect grazer interactions through grazer-induced changes in plant traits, providing the first example in a seagrass system.

Lithostratigraphic, borehole-geophysical, hydrogeologic, and hydrochemical data from the East Bay Plain, Alameda County, California

Science.gov (United States)

Sneed, Michelle; Orlando, Patricia v.P.; Borchers, James W.; Everett, Rhett; Solt, Michael; McGann, Mary; Lowers, Heather; Mahan, Shannon

2015-01-01

The U.S. Geological Survey, in cooperation with the East Bay Municipal Utility District, carried out an investigation of aquifer-system deformation associated with groundwater-level changes at the Bayside Groundwater Project near the modern San Francisco Bay shore in San Lorenzo, California. As a part of the Bayside Groundwater Project, East Bay Municipal Utility District proposed an aquifer storage and recovery program for 1 million gallons of water per day. The potential for aquifer-system compaction and expansion, and related subsidence, uplift, or both, resulting from aquifer storage and recovery activities were investigated and monitored in the Bayside Groundwater Project. In addition, baseline analysis of groundwater and substrata properties were performed to assess the potential effect of such activities. Chemical and physical data, obtained from the subsurface at four sites on the east side of San Francisco Bay in the San Lorenzo and San Leandro areas of the East Bay Plain, Alameda County, California, were collected during the study. The results of the study were provided to the East Bay Municipal Utility District and other agencies to evaluate the chemical and mechanical responses of aquifers underlying the East Bay Plain to the future injection and recovery of imported water from the Sierra Nevada of California.

Dynamics of organic and inorganic carbon in surface sediments of the Yellow River Estuary

Science.gov (United States)

Yu, Z.; Wang, X.; Liu, X.; Zhang, E.; Hang, F.

2017-12-01

Estuarine sediment is an important carbon reservoir thus may play an important role in the global carbon cycle. However, little is known on the dynamics of organic carbon (OC) and inorganic carbon (IC) in the surface sediment of the Yellow River Estuary, a large estuary in northern China. In this study, we applied element analyses and isotopic approach to study spatial distribution and sources of OC and IC in the Yellow River Estuary. We found that TIC concentration (6.3-20.1 g kg-1) was much higher than TOC (0.2-4.4 g kg-1) in the surface sediment. There showed a large spatial variability in TOC and TIC and their stable isotopes. Both TOC and TIC were higher to the north (2.6 and 14.5 g kg-1) than to the south (1.6 and 12.2 g kg-1), except in the southern bay where TOC and TIC reached 2.7 and 15.4 g kg-1, respectively. Generally, TOC and TIC in our study area was mainly autochthonous. The lower TOC values in the south section were due to relatively higher kinetic energy level whereas the higher values in the bay was attributable to terrigenous matters accumulation and lower kinetic energy level. However, the southern bay revealed the most negative δ13Corg and δ13Ccarb, suggesting that there might exist some transfer of OC to IC in the section. Our study points out that the dynamics of sedimentary carbon in the Yellow River Estuary is influenced by multiple and complex processes, and highlights the importance of carbonate in carbon sequstration.

Recording of the Holocene sediment infilling in a confined tide-dominated estuary: the bay of Brest (Britanny, France)

Science.gov (United States)

Gregoire, Gwendoline; Le Roy, Pascal; Ehrhold, Axel; Jouet, Gwenael; Garlan, Thierry

2016-04-01

Modern estuaries constitute key areas for the preservation of sedimentary deposits related to the Holocene period. Several previous studies using stratigraphic reconstructions in such environments allowed to characterise the major parameters controlling the Holocene transgressive sequence and to decipher their respective role in the sedimentary infill: (1) the evolution of main hydrologic factors (wave or tide-dominated environment), (2) the sea level fluctuation and (3) the morphologies of the bedrock and the coastline. Nevertheless, the timing of the transgressive deposits and the detailed facies need to be precise in regard to the stratigraphic schemes. The Bay of Brest (Western Brittany, France) offers the opportunity to examine these points and to compare with previous studies. It constitutes an original tide-dominated estuary that communicates to the open sea (Iroise Sea) by a narrow strait. Two main rivers (Aulne and Elorn) are connected to a submerged paleovalleys network that was incised in the Paleozoic basement during lowstands and still preserved in the present morphology. It delineates the central basin surrounded by tidal flat located in sheltered area. The analysis of high and very-high resolution seismic lines recorded through the whole bay combined with sediment cores (up to 4.5 m long) and radiocarbon dating allow to precise the architecture and the timing of the thick Holocene coastal wedge. It is preserved from the valley network to the shore and presents a longitudinal variability (downstream-upstream evolution). The infill is divided into two successive stages (corresponding to the transgressive and highstand system tracts) which laterally evolve from the paleo-valley to the coast. Two units constitute the transgressive system tract. The oldest, dated from 8200 to 7000 cal B.P. is composed of fine-grained, organic-rich tidal flat deposits located in the sheltered area and organised in levees on the terrace bordering the paleo-valley. A tidal

A probable prehistoric case of meningococcal disease from San Francisco Bay: Next generation sequencing of Neisseria meningitidis from dental calculus and osteological evidence.

Science.gov (United States)

Eerkens, Jelmer W; Nichols, Ruth V; Murray, Gemma G R; Perez, Katherine; Murga, Engel; Kaijankoski, Phil; Rosenthal, Jeffrey S; Engbring, Laurel; Shapiro, Beth

2018-05-25

Next Generation Sequencing (NGS) of ancient dental calculus samples from a prehistoric site in San Francisco Bay, CA-SCL-919, reveals a wide range of potentially pathogenic bacteria. One older adult woman, in particular, had high levels of Neisseria meningitidis and low levels of Haemophilus influenzae, species that were not observed in the calculus from three other individuals. Combined with the presence of incipient endocranial lesions and pronounced meningeal grooves, we interpret this as an ancient case of meningococcal disease. This disease afflicts millions around the globe today, but little is known about its (pre)history. With additional sampling, we suggest NGS of calculus offers an exciting new window into the evolutionary history of these bacterial species and their interactions with humans. Copyright © 2018 Elsevier Inc. All rights reserved.

A sediment budget for the southern reach in San Francisco Bay, CA: Implications for habitat restoration

Science.gov (United States)

Shellenbarger, Gregory; Wright, Scott A.; Schoellhamer, David H.

2013-01-01

The South Bay Salt Pond Restoration Project is overseeing the restoration of about 6000 ha of former commercial salt-evaporation ponds to tidal marsh and managed wetlands in the southern reach of San Francisco Bay (SFB). As a result of regional groundwater overdrafts prior to the 1970s, parts of the project area have subsided below sea-level and will require between 29 and 45 million m3 of sediment to raise the surface of the subsided areas to elevations appropriate for tidal marsh colonization and development. Therefore, a sufficient sediment supply to the far south SFB subembayment is a critical variable for achieving restoration goals. Although both major tributaries to far south SFB have been seasonally gaged for sediment since 2004, the sediment flux at the Dumbarton Narrows, the bayward boundary of far south SFB, has not been quantified until recently. Using daily suspended-sediment flux data from the gages on Guadalupe River and Coyote Creek, combined with continuous suspended-sediment flux data at Dumbarton Narrows, we computed a sediment budget for far south SFB during Water Years 2009–2011. A Monte Carlo approach was used to quantify the uncertainty of the flux estimates. The sediment flux past Dumbarton Narrows from the north dominates the input to the subembayment. However, environmental conditions in the spring can dramatically influence the direction of springtime flux, which appears to be a dominant influence on the net annual flux. It is estimated that up to several millennia may be required for natural tributary sediments to fill the accommodation space of the subsided former salt ponds, whereas supply from the rest of the bay could fill the space in several centuries. Uncertainty in the measurement of sediment flux is large, in part because small suspended-sediment concentration differences between flood and ebb tides can lead to large differences in total mass exchange. Using Monte Carlo simulations to estimate the random error associated with

U.S. Geological Survey Science—Improving the value of the Chesapeake Bay watershed

Science.gov (United States)

Phillips, Scott W.; Hyer, Kenneth; Goldbaum, Elizabeth

2017-05-05

IntroductionCongress directed the Federal Government to work with States to restore the Nation’s largest estuary.Chesapeake Bay restoration provides important economic and ecological benefits:18 million people live and work in the Bay watershed and enjoy its benefits.3,600 types of fish, wildlife, and plants underpin the economic value of the Bay ecosystem.Poor water quality and habitat loss threaten restoration and negatively impact the economy.10 Goals to meet by 2025 through the Chesapeake Bay Program, a voluntary partnership.

Landslides, Floods, and Marine Effects of the Storm of January 3-5, 1982, in the San Francisco Bay Region, California

Science.gov (United States)

Ellen, Stephen D.; Wieczorek, Gerald F.

1988-01-01

A catastrophic rainstorm in central California on January 3-5,1982, dropped as much as half the mean annual precipitation within a period of about 32 hours, triggering landslides and floods throughout 10 counties in the vicinity of the San Francisco Bay. More than 18,000 of the slides induced by the storm transformed into debris flows that swept down hillslopes or drainages with little warning. Debris flows damaged at least 100 homes, killed 14 residents, and carried a 15th victim into a creek. Shortly after rainfall ceased, more than 459,000 m3 of earth and rock slid from a mountainside above the community of Love Creek in Santa Cruz County, burying 10 people in their homes. Throughout the bay region, thousands of people vacated homes in hazardous areas, entire communities were isolated as roads were blocked, public water systems were destroyed, and power and telephone services were disrupted. Altogether, the storm damaged 6,300 homes, 1,500 businesses, and tens of kilometers of roads, bridges, and communication lines. Preliminary rough estimates of total storm damage, compiled for emergency purposes within 2 weeks of the storm, exceeded $280 million. Carefully documented direct costs from landslides exceeded $66 million; total costs from landslides certainly were greater and probably constituted a much larger proportion of the total storm damage than suggested by these disparate figures. Landslides accounted for 25 of the 33 deaths attributed to the storm.

Hydrochemical and isotopic characteristics of estuarial seawater and river water of Bailanghe in Laizhou Bay, China

Science.gov (United States)

Yang, Qiaofeng; Xu, Suning; Wang, Ruijiu; Li, Wenpeng; Wang, Zhiyi; Mei, Junjun; Ding, Zhilei; Yang, Peijie; Yu, Liangju; Lv, Tieying; Bai, Gang; Kang, Wei

2016-04-01

In the study of seawater intrusion, seawater is usually taken as an end-member that mixes with other source(s). However, compared to standard seawater, the coastal seawater particularly that near the estuary, can be strongly influenced by the rivers into the sea and by coastal human activities. Their composition can be thus continuously changed and redistributed with space and time. Therefore, before investigating seawater intrusion in a certain area, it is essentially important to determine the features of the estuarine seawater (e.g. the mixture percentage between standard seawater and river water). In this study, we aimed to gain a clear situation of the seawater intrusion in Laizhou Bay, Southern Bohai, China. The issue aforementioned was investigated by comparing the stable isotopic and hydrochemical composition of the marine and river water collected in this area. Samples investigated include 5 surface water samples collected at the downstream of the Bailanghe and 7 seawater samples near the estuary of Laizhou Bay. Inert tracers (δD, δ18O, Cl, Br) and reaction tracers (Na, Mg, SO4, HCO3, Ca, NO3) are particularly analyzed. The major results are as follows: 1) All the river water samples fall below the Global Meteoric Water Line in the δD - δ18O diagram, reflecting evaporation of the upstream reservoir water. The seawater samples fall on the mixing line of standard seawater and the river water in the stable isotopic diagram. 2) The Cl-δ18O diagram indicates widespread dissolution of evaporate into the river, while high concentration of Ca and HCO3-, as well as the SO42- - Cl relation of the river water samples reflect the dissolution of CO2 , carbonate and sulfate in the atmosphere and on the ground. 3) The Br/Cl ratios of seawater samples are closed to the marine ratios. This together with the plots of major ions vs. Cl suggest that the seawater samples are originated from the mixture of standard seawater and river water. Therefore, when referring to the

Environmental management of a highly impacted, urbanized tropical estuary: rehabilitation and restoration

Science.gov (United States)

Thorhaug, A.

1980-03-01

The principles of the dynamics and interrelationships within the dominant subtropical and tropical Caribbean seagrass community have been studied previously before, during, and after impact. From these and scores of observations of damage and recovery patterns in Thalassia ecosystems, a sense of management recovery strategy has emerged. Artificial restoring of Thalassia testudinum seeds into areas cut off from stock (fruit, seeds) appeared feasible on a large scale after the Turkey Point (Biscayne Bay, Miami, Florida) restoration and test sampling throughout North Biscayne Bay. Two large-scale seeding attempts were made; after 11 months they compared favorably with Turkey Point specimens with regard to growth parameters, despite the turbidity and other persistent pollution. Thus, the possible areas in which Thalassia seed restoration can be used has increased to include estuaries of multiple impact still in various stages of recovery after physical and sewage pollution. This technique should be especially useful to “developing” nations where important nearshore fisheries nurseries based on Thalassia ecosystems have been heavily damaged and now lie barren. Man's impact on the estuary where seed restoration was attempted includes the following activities: 50% of the bay bottom directly dredged or filled (leaving much unconsolidated sediment); 50 million gallons of domestic waste dumped directly into a low flushing part of the bay for 20 years; seven major causeways transecting the bay, restricting circulation and flushing; two artificial inlets made into navigational channels; freshwater sheet flow drastically changed due to channelization by flood-control canals; urban runoff from a million people entering the bay. Most of the impacts have now abated; however, their long-term effects remain.

Organic carbon balance and net ecosystem metabolism in Chesapeake Bay

Science.gov (United States)

Kemp, W.M.; Smith, E.M.; Marvin-DiPasquale, M.; Boynton, W.R.

1997-01-01

The major fluxes of organic carbon associated with physical transport and biological metabolism were compiled, analyzed and compared for the mainstem portion of Chesapeake Bay (USA). In addition, 5 independent methods were used to calculate the annual mean net ecosystem metabolism (NEM = production - respiration) for the integrated Bay. These methods, which employed biogeochemical models, nutrient mass-balances anti summation of individual organic carbon fluxes, yielded remarkably similar estimates, with a mean NEM of +50 g C m-2 yr-1 (?? SE = 751, which is approximately 8% of the estimated annual average gross primary production. These calculations suggest a strong cross-sectional pattern in NEM throughout the Bay, wherein net heterotrophic metabolism prevails in the pelagic zones of the main channel, while net autotrophy occurs in the littoral zones which flank the deeper central area. For computational purposes, the estuary was separated into 3 regions along the land-sea gradient: (1) the oligohaline Upper Bay (11% of total area); (2) the mesohaline Mid Bay (36% of area); and (3) the polyhaline Lower Bay (53% of area). A distinct regional trend in NEM was observed along this salinity gradient, with net here(atrophy (NEM = 87 g C m-2 yr-1) in the Upper Bay, balanced metabolism in the Mid Bay and net autotrophy (NEM = +92 g C m-2 yr-1) in the Lower Bay. As a consequence of overall net autotrophy, the ratio of dissolved inorganic nitrogen (DIN) to total organic nitrogen (TON) changed from DIN:TON = 5.1 for riverine inputs to DIN:TON = 0.04 for water exported to the ocean. A striking feature of this organic C mass-balance was the relative dominance of biologically mediated metabolic fluxes compared to physical transport fluxes. The overall ratio of physical TOC inputs (1) to biotic primary production (P) was 0.08 for the whole estuary, but varied dramatically from 2.3 in the Upper Bay to 0.03 in the Mid and Lower Bay regions. Similarly, ecosystem respiration was

Florida Bay: A history of recent ecological changes

Science.gov (United States)

Fourqurean, J.W.; Robblee, M.B.

1999-01-01

Florida Bay is a unique subtropical estuary at the southern tip of the Florida peninsula. Recent ecological changes (seagrass die-off, algal blooms, increased turbidity) to the Florida Bay ecosystem have focused the attention of the public, commercial interests, scientists, and resource managers on the factors influencing the structure and function of Florida Bay. Restoring Florida Bay to some historic condition is the goal of resource managers, but what is not clear is what an anthropogenically-unaltered Florida Bay would look like. While there is general consensus that human activities have contributed to the changes occurring in the Florida Bay ecosystem, a high degree of natural system variability has made elucidation of the links between human activity and Florida Bay dynamics difficult. Paleoecological analyses, examination of long-term datasets, and directed measurements of aspects of the ecology of Florida Bay all contribute to our understanding of the behavior of the bay, and allow quantification of the magnitude of the recent ecological changes with respect to historical variability of the system.

The zooplankton of Mgazana, a mangrove estuary in Transkei

African Journals Online (AJOL)

continent. The estuary is in an excellent state of preservation and all three species of mangrove trees which occur south of K.osi Bay (260 54' S) are recorded here (Avicennia marina, Bruguieria gymnorhiza .... of Heron Island a shallow ford or drift occurs where depth may be less than 0,25 m at low tide. Above the island the ...

Integrating science and resource management in Tampa Bay, Florida

Science.gov (United States)

Yates, Kimberly K.; Greening, Holly; Morrison, Gerold

2011-01-01

Tampa Bay is recognized internationally for its remarkable progress towards recovery since it was pronounced "dead" in the late 1970s. Due to significant efforts by local governments, industries and private citizens throughout the watershed, water clarity in Tampa Bay is now equal to what it was in 1950, when population in the watershed was less than one-quarter of what it is today. Seagrass extent has increased by more than 8,000 acres since the mid-1980s, and fish and wildlife populations are increasing. Central to this successful turn-around has been the Tampa Bay resource management community's long-term commitment to development and implementation of strong science-based management strategies. Research institutions and agencies, including Eckerd College, the Florida Wildlife Commission Fish and Wildlife Research Institute, Mote Marine Laboratory, National Oceanic and Atmospheric Administration, the Southwest Florida Water Management District, University of South Florida, U.S. Environmental Protection Agency, U.S. Geological Survey, local and State governments, and private companies contribute significantly to the scientific basis of our understanding of Tampa Bay's structure and ecological function. Resource management agencies, including the Tampa Bay Regional Planning Council's Agency on Bay Management, the Southwest Florida Water Management District's Surface Water Improvement and Management Program, and the Tampa Bay Estuary Program, depend upon this scientific basis to develop and implement regional adaptive management programs. The importance of integrating science with management has become fully recognized by scientists and managers throughout the region, State and Nation. Scientific studies conducted in Tampa Bay over the past 10–15 years are increasingly diverse and complex, and resource management programs reflect our increased knowledge of geology, hydrology and hydrodynamics, ecology and restoration techniques. However, a synthesis of this

Tidal and spatial variability of nitrous oxide (N2O) in Sado estuary (Portugal)

Science.gov (United States)

Gonçalves, Célia; Brogueira, Maria José; Nogueira, Marta

2015-12-01

The estimate of the nitrous oxide (N2O) fluxes is fundamental to assess its impact on global warming. The tidal and spatial variability of N2O and the air-sea fluxes in the Sado estuary in July/August 2007 are examined. Measurements of N2O and other relevant environmental parameters (temperature, salinity, dissolved oxygen and dissolved inorganic nitrogen - nitrate plus nitrite and ammonium) were recorded during two diurnal tidal cycles performed in the Bay and Marateca region and along the estuary during ebb, at spring tide. N2O presented tidal and spatial variability and varied spatially from 5.0 nmol L-1 in Marateca region to 12.5 nmol L-1 in Sado river input. Although the Sado river may constitute a considerable N2O source to the estuary, the respective chemical signal discharge was rapidly lost in the main body of the estuary due to the low river flow during the sampling period. N2O varied with tide similarly between 5.2 nmol L-1 (Marateca) and 10.0 nmol L-1 (Sado Bay), with the maximum value reached two hours after flooding period. The influence of N2O enriched upwelled seawater (˜10.0 nmol L-1) was well visible in the estuary mouth and apparently represented an important contribution of N2O in the main body of Sado estuary. Despite the high water column oxygen saturation in most of Sado estuary, nitrification did not seem a relevant process for N2O production, probably as the concentration of the substrate, NH4+, was not adequate for this process to occur. Most of the estuary functioned as a N2O source, and only Marateca zone has acted as N2O sink. The N2O emission from Sado estuary was estimated to be 3.7 Mg N-N2O yr-1 (FC96) (4.4 Mg N-N2O yr-1, FRC01). These results have implications for future sampling and scaling strategies for estimating greenhouse gases (GHGs) fluxes in tidal ecosystems.

Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California: 2014

Science.gov (United States)

Cain, Daniel J.; Thompson, Janet K.; Crauder, Jeff; Parcheso, Francis; Stewart, Robin; Kleckner, Amy E.; Dyke, Jessica; Hornberger, Michelle I.; Luoma, Samuel N.

2015-01-01

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer (km) south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in South San Francisco Bay, Calif. This report includes the data collected by U.S. Geological Survey (USGS) scientists for the period January 2014 to December 2014. These append to long-term datasets extending back to 1974, and serve as the basis for the City of Palo Alto’s Near-Field Receiving Water Monitoring Program, initiated in 1994. 

Growth of Crassostrea gasar cultured in marine and estuary environments in Brazilian waters

Directory of Open Access Journals (Sweden)

Gustavo Ruschel Lopes

2013-08-01

Full Text Available The objective of this work was to evaluate the growth of the mangrove oyster Crassostrea gasar cultured in marine and estuarine environments. Oysters were cultured for 11 months in a longline system in two study sites - São Francisco do Sul and Florianópolis -, in the state of Santa Catarina, Southern Brazil. Water chlorophyll-α concentration, temperature, and salinity were measured weekly. The oysters were measured monthly (shell size and weight gain to assess growth. At the end of the culture period, the average wet flesh weight, dry flesh weight, and shell weight were determined, as well as the distribution of oysters per size class. Six nonlinear models (logistic, exponential, Gompertz, Brody, Richards, and Von Bertalanffy were adjusted to the oyster growth data set. Final mean shell sizes were higher in São Francisco do Sul than in Florianópolis. In addition, oysters cultured in São Francisco do Sul were more uniformly distributed in the four size classes than those cultured in Florianópolis. The highest average values of wet flesh weight and shell weight were observed in São Francisco do Sul, whereas dry flesh weight did not differ between the sites. The estuary environment is more promising for the cultivation of oysters.

Some Challenges of an “Upside Down” Nitrogen Budget – Science and Management in Greenwich Bay, RI (USA)

Science.gov (United States)

When nutrients impact estuarine water quality, scientists and managers instinctively focus on quantifying and controlling land-based sources. However, in Greenwich Bay, RI, the estuary opens onto a larger and more intensively fertilized coastal water body (Narragansett Bay). Prev...

Chesapeake Bay under stress

Science.gov (United States)

According to extensive data obtained over its 13,000 km of shoreline, the Chesapeake Bay has been suffering a major, indeed unprecedented, reduction in submerged vegetation. Chesapeake Bay is alone in experiencing decline in submerged vegetation. Other estuary systems on the east coast of the United States are not so affected. These alarming results were obtained by the synthesis of the findings of numerous individual groups in addition to large consortium projects on the Chesapeake done over the past decade. R. J. Orth and R. A. Moore of the Virginia Institute of Marine Science pointed to the problem of the severe decline of submerged grasses on the Bay and along its tributaries. In a recent report, Orth and Moore note: “The decline, which began in the 1960's and accelerated in the 1970's, has affected all species in all areas. Many major river systems are now totally devoid of any rooted vegetation” (Science, 222, 51-53, 1983).

Temporal variability of macrofauna from a disturbed habitat in Zuari estuary, west coast of India

Digital Repository Service at National Institute of Oceanography (India)

Sivadas, S.; Ingole, B.S.; Nanajkar, M.

of macrofaunal community from Mormugao Bay, Zuari estuary, (Goa) on the west coast of India was examined from 2003 to 2004 at seven stations. Environmental variability was assessed through physicochemical parameters of water and sediment. The changes...

Vibracore locations collected in 2014 from Barnegat Bay, New Jersey

Data.gov (United States)

Department of the Interior — In response to the 2010 Governor’s Action Plan to clean up the Barnegat Bay–Little Egg Harbor (BBLEH) estuary in New Jersey, the U.S. Geological Survey (USGS)...

Phytoplankton growth, dissipation, and succession in estuarine environments. [Chesapeake Bay

Energy Technology Data Exchange (ETDEWEB)

Seliger, H H

1976-01-01

Two major advances in a study of phytoplankton ecology in the Chesapeake Bay are reported. The annual subsurface transport of a dinoflagellate species (Prorocentrum mariae labouriae) from the mouth of the bay a distance northward of 120 nautical miles to the region of the Bay Bridge was followed. Prorocentrum is a major seasonal dinoflagellate in the Chespeake Bay and annually has been reported to form mahogany tides, dense reddish-brown patches, in the northern bay beginning in late spring and continuing through the summer. Subsequent to this annual appearance the Prorocentrum spread southward and into the western tributary estuaries. The physiological behavioral characteristics of the Prorocentrum were correlated with the physical water movements in the bay. A phytoplankton cage technique for the measurement in situ of the growth rates of natural mixed populations is described. (CH)

Review and synthesis of historical Tampa Bay water quality data. Final technical report

International Nuclear Information System (INIS)

Vargo, G.; Weisberg, R.; Bendis, B.; Rutherford, E.H.

1992-11-01

The review and synthesis of historical water quality data was one of the first characterization projects administered by the Tampa Bay National Estuary Program (NEP). The objective of the project was to describe the physical, chemical and biological characteristics of Tampa Bay. The report examines the spatial and temporal trends from the acquired data for possible interrelationships and develops them statistically

The Delaware Bay Estuary as a Classroom: A Research Experience for Future Elementary Grade-Level Teachers

Science.gov (United States)

Madsen, J.; Fifield, S.; Allen, D.; Shipman, H.; Ford, D.; Dagher, Z.; Brickhouse, N.

2004-05-01

With supplemental funding from the National Science Foundation (NSF), students from the University of Delaware's Science Semester course took part in a two-day research cruise in the Delaware Bay Estuary. The Science Semester, an NSF-funded project, is an integrated 15-credit sequence that encompasses the entire course work for the spring semester for approximately 60 sophomore-level elementary education majors. The semester includes the earth, life, and physical science content courses and the education science methods course integrated into one curriculum. In this curriculum, problem-based learning and other inquiry-based approaches are applied to foster integrated understandings of science and pedagogy that future elementary teachers need to effectively use inquiry-based approaches in their classrooms. The research cruise was conducted as part of one of the four major investigations during the course. The investigation focused on Delaware's state marine animal, Limulus polyphemus. It is one of the four remaining species of horseshoe crabs; the largest spawning population of Limulus is found in Delaware Bay. Within the problem- and inquiry-based learning approaches of the Science Semester course, the students became aware that very little data exists on the benthic habitat of Limulus polyphemus. In order to learn more about this habitat, a cohort of seven students from the course was recruited as part of the scientific party to take part in the research cruise to collect data on the floor of Delaware Bay. The data included: multibeam bathymetry/backscatter data, grab samples of bay bottom sediments, and CTD profiles. Prior to the cruise, all students in the course took part in laboratory exercises to learn about topographic maps and navigation charts using the Delaware Bay area as the region of study. While "at-sea", the cruise participants sent the ship's latitude and longitude positions as a function of time. The positions were used by the on-land students to

The mismatch of bioaccumulated trace metals (Cu, Pb and Zn) in field and transplanted oysters (Saccostrea glomerata) to ambient surficial sediments and suspended particulate matter in a highly urbanised estuary (Sydney estuary, Australia).

Science.gov (United States)

Lee, Jung-Ho; Birch, Gavin F

2016-04-01

A significant correlation between sedimentary metals, particularly the 'bio-available' fraction, and bioaccumulated metal concentrations in the native Sydney rock oyster (Saccostrea glomerata) tissues has been successfully demonstrated previously for Cu and Zn in a number of estuaries in New South Wales, Australia. However, this relationship has been difficult to establish in a highly modified estuary (Sydney estuary, Australia) where metal contamination is of greatest concern and where a significant relationship would be most useful for environmental monitoring. The use of the Sydney rock oyster as a biomonitoring tool for metal contamination was assessed in the present study by investigating relationships between metals attached to sediments and suspended particulate matter (SPM) to bioaccumulated concentrations in oyster tissues. Surficial sediments (both total and fine-fraction), SPM and wild oysters were collected over 3 years from three embayments (Chowder Bay, Mosman Bay and Iron Cove) with each embayment representing a different physiographic region of Sydney estuary. In addition, a transplant experiment of farmed oysters was conducted in the same embayments for 3 months. No relationship was observed between sediments or SPM metals (Cu, Pb and Zn) to tissue of wild oysters; however, significant relationship was observed against transplanted oysters. The mismatch between wild and farmed, transplanted oysters is perplexing and indicates that wild oysters are unsuitable to be used as a biomonitoring tool due to the involvement of unknown complex factors while transplanted oysters hold strong potential.

Hydrogeologic setting and ground water flow beneath a section of Indian River Bay, Delaware

Science.gov (United States)

Krantz, David E.; Manheim, Frank T.; Bratton, John F.; Phelan, Daniel J.

2004-01-01

The small bays along the Atlantic coast of the Delmarva Peninsula (Delaware, Maryland, and Virginia) are a valuable natural resource, and an asset for commerce and recreation. These coastal bays also are vulnerable to eutrophication from the input of excess nutrients derived from agriculture and other human activities in the watersheds. Ground water discharge may be an appreciable source of fresh water and a transport pathway for nutrients entering the bays. This paper presents results from an investigation of the physical properties of the surficial aquifer and the processes associated with ground water flow beneath Indian River Bay, Delaware. A key aspect of the project was the deployment of a new technology, streaming horizontal resistivity, to map the subsurface distribution of fresh and saline ground water beneath the bay. The resistivity profiles showed complex patterns of ground water flow, modes of mixing, and submarine ground water discharge. Cores, gamma and electromagnetic-induction logs, and in situ ground water samples collected during a coring operation in Indian River Bay verified the interpretation of the resistivity profiles. The shore-parallel resistivity lines show subsurface zones of fresh ground water alternating with zones dominated by the flow of salt water from the estuary down into the aquifer. Advective flow produces plumes of fresh ground water 400 to 600 m wide and 20 m thick that may extend more than 1 km beneath the estuary. Zones of dispersive mixing between fresh and saline ground water develop on the upper, lower, and lateral boundaries of the the plume. the plumes generally underlie small incised valleys that can be traced landward to stream draining the upland. The incised valleys are filled with 1 to 2 m of silt and peat that act as a semiconfining layer to restrict the downward flow of salt water from the estuary. Active circulation of both the fresh and saline ground water masses beneath the bay is inferred from the geophysical

Tidal Mixing Box Submodel for Tampa Bay: Calibration of Tidal Exchange Flows with the Parameter Estimation Tool (PEST)

Science.gov (United States)

In the mid-1990s the Tampa Bay Estuary Program proposed a nutrient reduction strategy focused on improving water clarity to promote seagrass expansion within Tampa Bay. A System Dynamics Model is being developed to evaluate spatially and temporally explicit impacts of nutrient r...

Trace elements and heavy metals in the Grand Bay National Estuarine Reserve in the northern Gulf of Mexico

Science.gov (United States)

The Grand Bay National Estuarine Research Reserve has the highest biotic diversity of habitats and offer a reserve of food resources and commercially significant species. Rapid human civilization has led to accumulation of heavy metals and trace elements in estuaries. The Grand Bay National Estuarin...

Monitoring Water Quality at Lake Merritt, Oakland, CA Following Improvements to the Tidal Channel to the San Francisco Bay

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Bracho, H.; Martinez, J.; Johnson, M.; Turrey, A.; Avila, M.; Medina, S.; Rubio, E.; Ahumada, E.; Nguyen, S.; Guzman, Y.

2014-12-01

Elliot Ahumada, Esosa Oghogho, Samantha Nguyen, Humberto Bracho, Diego Quintero, Ashanti Johnson and Kevin Cuff Lake Merritt is a tidal lagoon in the center of Oakland, California, just east of Downtown. Water quality at Lake Merritt has been a major concern for community members and researchers for many years (Pham 200X). Results of past research lead to recommendations to lengthen a channel that connects Lake Merritt with the San Francisco Bay to improve water flow and quality. In 2012 the City of Oakland responded to these recommendations by initiating the creation of a 230-meter long channel. In conducting our research we use a water quality index that takes into account measurements of pH, temperature, water hardness (dissolved solids), ammonia, salinity, dissolved oxygen, and nitrate. Newly collected data is then compared with that collected by Pham using comparable parameters to assess the impact of recent changes at the Lake on its overall water quality. In addition, we measured the abundance of aquatic species at four different sites within the Lake. Preliminary results suggest that an increase in the abundance of fish and improved overall water quality have resulted from channel extension at Lake Merritt.

Below the Disappearing Marshes of an Urban Estuary: Historic Nitrogen Trends and Soil Structure

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Marshes in the urban Jamaica Bay Estuary, New York, USA are disappearing at an average rate of 13 ha/yr, and multiple stressors (e.g., wastewater inputs, dredging activities, groundwater removal, and global warming) may be contributing to marsh losses. Among these stressors, wa...

Hydrodynamic Characteristics and Salinity Patterns in Estero Bay, Lee County, Florida

Science.gov (United States)

Byrne, Michael J.; Gabaldon, Jessica N.

2008-01-01

Estero Bay is an estuary (about 12 miles long and 3 miles wide) on the southwestern Florida coast, with several inlets connecting the bay to the Gulf of Mexico and numerous freshwater tributaries. Continuous stage and salinity data were recorded at eight gaging stations in Estero Bay estuary from October 2001 to September 2005. Continuous water velocity data were recorded at six of these stations for the purpose of measuring discharge. In addition, turbidity data were recorded at four stations, suspended sediment concentration were measured at three stations, and wind measurements were taken at one station. Salinity surveys, within and around Estero Bay, were conducted 15 times from July 2002 to January 2004. The average daily discharge ranged from 35,000 to -34,000 ft3/s (cubic feet per second) at Big Carlos Pass, 10,800 to -11,200 ft3/s at Matanzas Pass, 2,200 to -2,900 ft3/s at Big Hickory Pass, 680 to -700 ft3/s at Mullock Creek, 330 to -370 ft3/s at Estero River, and 190 to -180 ft3/s at Imperial River. Flood tide is expressed as negative discharge and ebb flow as positive discharge. Reduced salinity at Matanzas Pass was negatively correlated (R2 = 0.48) to freshwater discharge from the Caloosahatchee River at Franklin Locks (S-79). Matanzas Pass is hydrologically linked to Hell Peckney Bay; therefore, water-quality problems associated with the Caloosahatchee River also affect Hell Peckney Bay. Rocky Bay was significantly less saline than Coconut Point and Matanzas Pass was significantly less saline than Ostego Bay, based on data from the salinity surveys. The quality-checked and edited continuous data and the salinity maps have been compiled and are stored on the U.S. Geological Survey South Florida Information Access (SOFIA) website (http://sofia.usgs.gov).

Effects of urbanisation on macroalgae and sessile invertebrates in southeast Australian estuaries

Science.gov (United States)

Fowles, Amelia E.; Stuart-Smith, Rick D.; Stuart-Smith, Jemina F.; Hill, Nicole A.; Kirkpatrick, Jamie B.; Edgar, Graham J.

2018-05-01

The influence of anthropogenic and environmental factors on the composition, cover and dominance of macroalgae and sessile invertebrates was assessed in three capital city estuaries in south-eastern Australia. Heavy metals and proximity to ports showed the strongest relationships to the distribution of sessile reef biota after accounting for natural environmental gradients. The densities of laminarian, fucoid, brown and red foliose algae were negatively correlated with heavy metals, both in Port Phillip Bay (Melbourne) and the Derwent (Hobart), while turf, filamentous algae and some invertebrates were favoured. Sydney Harbour possessed a different pattern, with the laminarian kelp Ecklonia radiata most abundant near the main shipping port, probably because of biotic interactions involving urchin grazing in the lower estuary. Identifying drivers of benthic community pattern represents a key challenge for effective conservation management, particularly for estuaries affected by multiple anthropogenic impacts.

Networked but No System: Educational Innovation among Bay Area Jewish Organizations

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Rubin Ross, Renee

2017-01-01

A widely read article from this journal explores innovative Jewish educational programs, initiatives, and organizations, arguing that these share a comdmitment to being "learner-centered" and recommending that a system be created to foster collaboration among them (Woocher, 2012). Using five San Francisco Bay Area-based…

Plutonium in Atlantic coastal estuaries in the southeastern United States of America

International Nuclear Information System (INIS)

Hayes, D.W.; LeRoy, J.H.; Cross, F.A.

1976-01-01

A survey was made to begin to provide baseline information on the plutonium distribution of representative estuarine and coastal areas of the southeastern United States of America. Sediments and marsh grass (Spartina) were collected and analysed from three locations within a tidal marsh. In the three estuaries (Savannah, Neuse and Newport) the suspended particulate matter (1μm and greater) was filtered from waters with different salinities and the plutonium content of the particulates determined. The Savannah river estuary, in addition to fall-out plutonium, has received up to 0.3Ci of plutonium from the Savannah River Plant (SRP) of the US Energy Research and Development Administration. The SRP plutonium has a variable isotopic composition that can influence plutonium isotopic ratios in the estuarine system. The other estuaries do not have nuclear installations upstream. Plutonium contents in surface marsh sediment from the Savannah River estuary are lower than those found in nearby bay sediments. In fact, total plutonium concentrations of sediments showed increases from the upper to lower portions of the estuary; however, higher contributions of 238 Pu in the upper portions indicate that releases from the Savannah River Plant do contribute plutonium to the Savannah river estuary. Plutonium concentrations in Spartina were less than 10fCi/g dry weight but are higher than plutonium contents of terrestrial plants ( 238 Pu to the total plutonium activities in the sediment and the Spartina. Plutonium concentrations were about three times higher in the Newport river estuary than in the Neuse and Savannah river estuaries. (author)

Organic Carbon and Trace Element Cycling in a River-Dominated Tidal Coastal Wetland System (Tampa Bay, FL, USA)

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Moyer, R. P.; Smoak, J. M.; Engelhart, S. E.; Powell, C. E.; Chappel, A. R.; Gerlach, M. J.; Kemp, A.; Breithaupt, J. L.

2016-02-01

Tampa Bay is the largest open water, river-fed estuary in Florida (USA), and is characterized by the presence of both mangrove and salt marsh ecosystems. Both coastal wetland systems, and small rivers such as the ones draining into Tampa Bay have historically been underestimated in terms of their role in the global carbon and elemental cycles. Climate change and sea-level rise (SLR) are major threats in Tampa Bay and stand to disrupt hydrologic cycles, compromising sediment accumulation and the rate of organic carbon (OC) burial. This study evaluates organic carbon content, sediment accumulation, and carbon burial rates in salt marsh and mangrove ecosystems, along with measurements of fluxes of dissolved OC (DOC) and trace elements in the water column of the Little Manatee River (LMR) in Tampa Bay. The characterization of OC and trace elements in tidal rivers and estuaries is critical for quantitatively constraining these systems in local-to-regional scale biogeochemical budgets, and provide insight into biogeochemical processes occurring with the estuary and adjacent tidal wetlands. Material fluxes of DOC and trace elements were tied to discharge irrespective of season, and the estuarine habitats removed 15-65% of DOC prior to export to Tampa Bay and the Gulf of Mexico. Thus, material is available for cycling and burial within marsh and mangrove peats, however, LMR mangrove peats have higher OC content and burial rates than adjacent salt marsh peats. Sedimentary accretion rates in LMR marshes are not currently keeping pace with SLR, thus furthering the rapid marsh-to-mangrove conversions that have been seen in Tampa Bay over the past half-century. Additionally, wetlands in Tampa Bay tend to have a lower rate of carbon burial than other Florida tidal wetlands, demonstrating their high sensitivity to climate change and SLR.

The distribution and speciation of trace metals in surface sediments from the Pearl River Estuary and the Daya Bay, Southern China

International Nuclear Information System (INIS)

Yu Xiujuan; Yan Yan; Wang Wenxiong

2010-01-01

Surface sediments collected from the Pearl River Estuary (PRE) and the Daya Bay (DYB) were analyzed for total metal concentrations and chemical phase partitioning. The total concentrations of Cr, Cu, Ni, Pb, and Zn in the PRE were obviously higher than those in DYB. The maximum concentrations of trace metals in DYB occurred in the four sub-basins, especially in Dapeng Cove, while the concentrations of these metals in the western side of the PRE were higher than those in the east side. Such distribution pattern was primarily due to the different hydraulic conditions and inputs of anthropogenic trace metals. The chemical partitioning of metals analyzed by the BCR sequential extraction method showed that Cr, Ni, and Zn of both areas were present dominantly in the residual fraction, while Pb was found mostly in the non-residual fractions. The partitioning of Cu showed a significant difference between the two areas.

Quaternary geology of Alameda County, and parts of Contra Costa, Santa Clara, San Mateo, San Francisco, Stanislaus, and San Joaquin counties, California: a digital database

Science.gov (United States)

Helley, E.J.; Graymer, R.W.

1997-01-01

Alameda County is located at the northern end of the Diablo Range of Central California. It is bounded on the north by the south flank of Mount Diablo, one of the highest peaks in the Bay Area, reaching an elevation of 1173 meters (3,849 ft). San Francisco Bay forms the western boundary, the San Joaquin Valley borders it on the east and an arbitrary line from the Bay into the Diablo Range forms the southern boundary. Alameda is one of the nine Bay Area counties tributary to San Francisco Bay. Most of the country is mountainous with steep rugged topography. Alameda County is covered by twenty-eight 7.5' topographic Quadrangles which are shown on the index map. The Quaternary deposits in Alameda County comprise three distinct depositional environments. One, forming a transgressive sequence of alluvial fan and fan-delta facies, is mapped in the western one-third of the county. The second, forming only alluvial fan facies, is mapped in the Livermore Valley and San Joaquin Valley in the eastern part of the county. The third, forming a combination of Eolian dune and estuarine facies, is restricted to the Alameda Island area in the northwestern corner of the county.

Sensitivity of Estuaries to Coastal Morphological Change Induced by Sea Level Rise

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Alizad, K.; Hagen, S. C.; Bilskie, M. V.; Mariotti, G.

2017-12-01

Coastal wetlands play a critical role by providing food and habitat for a variety of species and by dissipating wave and storm surge. These regions are also vulnerable to climate change and specifically rising sea levels. Projections show that coastal marshes across the Northern Gulf of Mexico are threatened by a higher risk of losing their productivity through increased inundation depth and time [Alizad et al., 2016a]. Individual estuaries will respond differently to stressors based on local conditions such as tidal range, creek geometry, and sediment sources, among others. In addition, morphological changes in estuaries are functions of both physical processes such as hydrodynamics and wind waves as well as biological mechanisms. To investigate the sensitivity of storm surge to bio-geomorphological changes associated with climate change within an estuary, the Hydro-MEM model [Alizad et al., 2016b] and first-order bathymetric changes were applied for a set of sea level rise (SLR) scenarios. Morphologic change in the form of marsh platform accretion and enhanced bay bathymetry through time was employed in an ADvanced CIRCulation (ADCIRC) shallow-water equation model. The model was used to run synthetic storm simulations for an intermediate-low (0.5 m), intermediate-high (1.2 m), and high (2.0 m) SLR scenarios in Grand Bay, MS (marine dominated) and Weeks Bay, AL (mixed) estuaries. Results including with and without morphologic changes applied will be discussed. Future steps for incorporating morphological effects including channel widening and wave erosion processes into the Hydro-MEM model is to couple morphologic and hydrodynamic models [Mariotti and Canestrelli, 2017] in the Hydro-MEM time step framework. ReferencesAlizad, K., S. C. Hagen, J. T. Morris, S. C. Medeiros, M. V. Bilskie, and J. F. Weishampel (2016a), Coastal wetland response to sea-level rise in a fluvial estuarine system, Earth's Future, 4(11), 483-497. Alizad, K., S. C. Hagen, J. T. Morris, P

Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery.

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Rick, Torben C; Reeder-Myers, Leslie A; Hofman, Courtney A; Breitburg, Denise; Lockwood, Rowan; Henkes, Gregory; Kellogg, Lisa; Lowery, Darrin; Luckenbach, Mark W; Mann, Roger; Ogburn, Matthew B; Southworth, Melissa; Wah, John; Wesson, James; Hines, Anson H

2016-06-07

Estuaries around the world are in a state of decline following decades or more of overfishing, pollution, and climate change. Oysters (Ostreidae), ecosystem engineers in many estuaries, influence water quality, construct habitat, and provide food for humans and wildlife. In North America's Chesapeake Bay, once-thriving eastern oyster (Crassostrea virginica) populations have declined dramatically, making their restoration and conservation extremely challenging. Here we present data on oyster size and human harvest from Chesapeake Bay archaeological sites spanning ∼3,500 y of Native American, colonial, and historical occupation. We compare oysters from archaeological sites with Pleistocene oyster reefs that existed before human harvest, modern oyster reefs, and other records of human oyster harvest from around the world. Native American fisheries were focused on nearshore oysters and were likely harvested at a rate that was sustainable over centuries to millennia, despite changing Holocene climatic conditions and sea-level rise. These data document resilience in oyster populations under long-term Native American harvest, sea-level rise, and climate change; provide context for managing modern oyster fisheries in the Chesapeake Bay and elsewhere around the world; and demonstrate an interdisciplinary approach that can be applied broadly to other fisheries.

Field guide to fishes of the chesapeake bay

CERN Document Server

Murdy, Edward O.

2013-01-01

The only comprehensive field guide to the Chesapeake’s fishes, this book is an indispensable resource for both anglers and students of the Bay. Vivid illustrations by Val Kells complement the expertise of researchers Edward O. Murdy and John A. Musick. They describe fishes that inhabit waters ranging from low-salinity estuaries to the point where the Bay meets the Atlantic Ocean. Key features of this field guide include• full-color illustrations of more than 200 species• text that is presented adjacent to illustrations for easy reference• detailed descriptions of physical characteristics, range, occurrence in the Bay, reproduction, diet, and statistics from fisheries research• spot illustrations that highlight critical features of certain fish• illustrations of juveniles when they look different from adults• appendices that include identification keys Formatted as a compact field guide for students, scientists, researchers, and fishermen, Field Guide to Fishes of the Chesapeake Bay should be a ...

Creating Safe Growth Strategies for the San Francisco Bay Area

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Report from a technical assistance project with the Association of Bay Area Governments to develop strategies to ensure that growth in the region is resilient to hazards such as earthquakes and sea level rise, but also affordable and transit accessible.

Examining social supply among nonmedical prescription stimulant users in the San Francisco Bay Area.

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Murphy, Fiona; Murphy, Sheigla; Sales, Paloma; Lau, Nicholas

2018-04-01

In the US, prescription stimulants are prescribed for a variety of conditions including attention deficit hyperactivity disorder (ADHD) and narcolepsy. Over the last two decades, dramatic increases in stimulant prescriptions have led to greater availability and increased risk for diversion and nonmedical use. Our own and other investigators' findings indicate that many drug "suppliers" do not fit into the traditional image of drug "dealers." These suppliers typically do not identify themselves as "dealers," but instead understand their drug distribution as sharing with people they know. Coomber and colleagues' (2007; 2013) concept of "social supply" raises the question: When friends supply or facilitate supply of drugs to friends, is this really dealing? Further, if dealing and supplying are distinct kinds of social transactions, should different types of criminal justice approaches be applied? Social supply extends our understanding of drug dealing as a complex social activity. In this article, we examine the issue of social supply among nonmedical users of prescription stimulants. We conducted a 36-month National Institute on Drug Abuse-funded project to conduct a qualitative, mixed methods study of 150 adult nonmedical prescription stimulant users in the San Francisco Bay Area. We explore intersecting factors, including life stage and social location, that contribute to decisions to use prescription stimulants nonmedically, motivations to use, knowledge about risks and benefits of prescription stimulant use, any adverse health or social consequences experienced, availability, acquisition and diversion of prescription stimulants, and differences in attitudes and behaviours. For this analysis, we rely on participants' narratives concerning prescription stimulant acquisition practices and how they understood these interactions, purchases, and exchanges with the suppliers of prescription stimulants in their social networks. The authors argue that acknowledging the

Estuarine water quality and plankton community responses in the Pensacola Bay Estuary

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Phytoplankton serve a centrally important role in estuaries forming the base of the food web. Thus factors that affect phytoplankton production and species composition cascades to higher trophic levels, ultimately affecting secondary production. Given their sensitivity to myriad ...

An integrated evaluation of molecular marker indices and linear alkylbenzenes (LABs) to measure sewage input in a subtropical estuary (Babitonga Bay, Brazil)

International Nuclear Information System (INIS)

Martins, César C.; Cabral, Ana Caroline; Barbosa-Cintra, Scheyla C.T.; Dauner, Ana Lúcia L.; Souza, Fernanda M.

2014-01-01

Babitonga Bay is a South Atlantic estuary with significant ecological function; it is part of the last remaining areas of mangrove communities in the Southern Hemisphere. The aim of this study was to determine the spatial distribution of the faecal sterols and linear alkylbenzenes (LABs) in surface sediments and to perform an integrated evaluation of several molecular marker indices to assess the sewage contamination status in the study area. The highest observed concentrations of faecal sterols (coprostanol + epicoprostanol) and LABs were 6.65 μg g −1 and 413.3 ng g −1 , respectively. Several faecal sterol indices were calculated and correlated with coprostanol levels; these analyses showed that the index limits presented in the current literature could underestimate the sewage contamination in this study area. For the overall estuarine system, a low sewage impact may be assumed based on the low total mass inventories calculated for coprostanol (between 1.4% and 4.8%). - Highlights: • Sewage contamination in a South Atlantic estuary was confirmed by molecular markers. • Faecal sterol indices were established as indicators of sewage contamination. • Estimates of the total mass inventory of coprostanol and LABs are presented. • Faecal sterols are preferable to LABs for the evaluation of sewage inputs in this study area. - Faecal sterols index limits has been established to a subtropical environment as way to ensure reliability for a more precise assessment of sewage contamination

Coupling alongshore variations in wave energy to beach morphologic change using the SWAN wave model at Ocean Beach, San Francisco, CA

Science.gov (United States)

Eshleman, Jodi L.; Barnard, Patrick L.; Erikson, Li H.; Hanes, Daniel M.

2007-01-01

conditions to help isolate the effects of offshore wave direction and period on nearshore wave predictions. Alongshore varying average beach change statistics are computed at specific profile locations from topographic beach surveys and lidar data. The study area is located in the San Francisco Bight in central California. Ocean Beach is a seven kilometer long north-south trending sandy coastline located just south of the entrance to the San Francisco Bay Estuary (Figure 1). It contains an erosion hotspot in the southern part of the beach which has resulted in damage to local infrastructure and is the cause of continued concern. A wide range of field data collection and numerical modeling efforts have been focused here as part of the United States Geological Survey's (USGS) San Francisco Bight Coastal Processes Study, which began in October 2003 and represents the first comprehensive study of coastal processes at the mouth of San Francisco Bay. Ocean Beach is exposed to very strong tidal flows, with measured currents often in excess of 1 m/s at the north end of the beach. Current profiler measurements indicate that current magnitudes are greater in the northern portion of the beach, while wave energy is greater in the southern portion where erosion problems are greatest (Barnard et al., 2007). The sub-aerial beach volume fluctuates seasonally over a maximum envelope of 400,000 m3 for the seven kilometer stretch (Barnard et al, 2007). The wave climate in the region is dominated by an abundance of low frequency energy (greater than 20 s period) and prevailing northwest incident wave angles. The application of a wave model to the region is further complicated by the presence of the Farallon Islands 40 kilometers west, and a massive ebb tidal delta at the mouth of San Francisco Bay (~150 km2), which creates complicated refraction patterns as wave energy moves from offshore Ocean Beach; however the cost and threat of the energetic nearshore environment have limited the temporal

Effects of Hypoxia on Sedimentary Nitrogen Cycling in the Pensacola Bay Estuary

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Eutrophic-induced hypoxic events pose a serious threat to estuaries in coastal systems. Hypoxic events are becoming more intense and widespread with changes in land use and increased anthropogenic pressures. Microbial communities involved in sedimentary nitrogen (N) cycling may h...

Reconnaissance of chemical and physical characteristics of selected bottom sediments of the Caloosahatchee River and estuary, tributaries, and contiguous bays, Lee County, Florida, July 20-30, 1998

Science.gov (United States)

Fernandez, Mario; Marot, M.E.; Holmes, C.W.

1999-01-01

This report summarizes a reconnaissance study, conducted July 20-30, 1998, of chemical and physical characteristics of recently deposited bottom sediments in the Caloosahatchee River and Estuary. Recently deposited sediments were identified using an isotopic chronometer, Beryllium-7 (7Be), a short-lived radioisotope. Fifty-nine sites were sampled in an area that encompasses the Caloosahatchee River (River) about three miles upstream from the Franklin Lock (S-79), the entire tidally affected length of the river (estuary), and the contiguous water bodies of Matlacha Pass, San Carlos Bay, Estero Bay, Tarpon Bay, and Pine Island Sound in Lee County, Florida. Bottom sediments were sampled for 7Be at 59 sites. From the results of the 7Be analysis, 30 sites were selected for physical and chemical analysis. Sediments were analyzed for particle size, total organic carbon (TOC), trace elements, and toxic organic compounds, using semiquantitative methods for trace elements and organic compounds. The semiquantitative scans of trace elements indicated that cadmium, copper, lead, and zinc concentrations, when normalized to aluminum, were above the natural background range at 24 of 30 sites. Particle size and TOC were used to characterize sediment deposition patterns and organic content. Pesticides, polychlorinated biphenyls (PCBs), and carcinogenic polycyclic aromatic hydrocarbons (CaPAHs) were determined at 30 sites using immunoassay analysis. The semiquantitative immunoassay analyses of toxic organic compounds indicated that all of the samples contained DDT, cyclodienes as chlordane (pesticides), and CaPAHs. PCBs were not detected. Based on analyses of the 30 sites, sediments at 10 of these sites were analyzed for selected trace elements and toxic organic compounds, including pesticides, PCBs, and PAHs, using quantitative laboratory procedures. No arsenic or cadmium was detected. Zinc was detected at two sites with concentrations greater than the lower limit of the range of

Identification of High Potential Bays for HABs Occurrence in Peninsular Malysia Using Palsar Remote Sensing Data

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Pour, A. B.; Hashim, M.

2016-09-01

Increasing frequency, intensity, and geographic distribution of Harmful algal blooms (HABs) poses a serious threat to the coastal fish/shellfish aquaculture and fisheries in Malaysian bays. Rising in sea level, shoreline erosion, stresses on fisheries, population pressure, interference of land-use and lack of institutional capabilities for integrated management make major challenges. Recent investigations and satellite observations indicate HABs originated from specific coast that have favourable geographic, geomorphic and coastal geology conditions to bring the green macro algae from the coast offshore. Therefore, the identification of high HABs frequented bays using remote sensing and geology investigations in Malaysian waters is required to reduce future challenges in this unique case. This research implemented comprehensive geomorphic and coastal geology investigations combined with remote sensing digital image processing approach to identify Malaysian bays frequented with HABs occurrence in Malaysian waters territory. The landscape and geomorphological features of the Malaysian bays were constructed from the Phased Array type L-band Synthetic Aperture Radar (PALSAR) remote sensing satellite data combined with field observations and surveying. The samples for laboratory analysis were collected from the sediment stations with different distance across shorelines features and watersheds of the Johor Bahru estuary. This research identified that semi-enclosed bays such as Kuala Lumpur and Johor Bahru bays with connection to estuaries have high potential to be frequented with HABs occurrence.

IDENTIFICATION OF HIGH POTENTIAL BAYS FOR HABs OCCURRENCE IN PENINSULAR MALYSIA USING PALSAR REMOTE SENSING DATA

Directory of Open Access Journals (Sweden)

A. B. Pour

2016-09-01

Full Text Available Increasing frequency, intensity, and geographic distribution of Harmful algal blooms (HABs poses a serious threat to the coastal fish/shellfish aquaculture and fisheries in Malaysian bays. Rising in sea level, shoreline erosion, stresses on fisheries, population pressure, interference of land-use and lack of institutional capabilities for integrated management make major challenges. Recent investigations and satellite observations indicate HABs originated from specific coast that have favourable geographic, geomorphic and coastal geology conditions to bring the green macro algae from the coast offshore. Therefore, the identification of high HABs frequented bays using remote sensing and geology investigations in Malaysian waters is required to reduce future challenges in this unique case. This research implemented comprehensive geomorphic and coastal geology investigations combined with remote sensing digital image processing approach to identify Malaysian bays frequented with HABs occurrence in Malaysian waters territory. The landscape and geomorphological features of the Malaysian bays were constructed from the Phased Array type L-band Synthetic Aperture Radar (PALSAR remote sensing satellite data combined with field observations and surveying. The samples for laboratory analysis were collected from the sediment stations with different distance across shorelines features and watersheds of the Johor Bahru estuary. This research identified that semi-enclosed bays such as Kuala Lumpur and Johor Bahru bays with connection to estuaries have high potential to be frequented with HABs occurrence.

Rayleigh wave group velocity and shear wave velocity structure in the San Francisco Bay region from ambient noise tomography

Science.gov (United States)

Li, Peng; Thurber, Clifford

2018-06-01

We derive new Rayleigh wave group velocity models and a 3-D shear wave velocity model of the upper crust in the San Francisco Bay region using an adaptive grid ambient noise tomography algorithm and 6 months of continuous seismic data from 174 seismic stations from multiple networks. The resolution of the group velocity models is 0.1°-0.2° for short periods (˜3 s) and 0.3°-0.4° for long periods (˜10 s). The new shear wave velocity model of the upper crust reveals a number of important structures. We find distinct velocity contrasts at the Golden Gate segment of the San Andreas Fault, the West Napa Fault, central part of the Hayward Fault and southern part of the Calaveras Fault. Low shear wave velocities are mainly located in Tertiary and Quaternary basins, for instance, La Honda Basin, Livermore Valley and the western and eastern edges of Santa Clara Valley. Low shear wave velocities are also observed at the Sonoma volcanic field. Areas of high shear wave velocity include the Santa Lucia Range, the Gabilan Range and Ben Lomond Plutons, and the Diablo Range, where Franciscan Complex or Silinian rocks are exposed.

Lessons learned using water quality models to develop numeric nutrient criteria for a Gulf coast estuary

Science.gov (United States)

Pensacola Bay is a shallow, mesotrophic estuary located in the north-central coast of the Gulf of Mexico, US. In November 2012, the US Environmental Protection Agency (US EPA) proposed numeric total nitrogen (TN), total phosphorus (TP), and chlorophyll-a (chl-a) water quality cr...

Conservation of Native Fishes of the San Francisco Estuary: Considerations for Artificial Propagation of Chinook Salmon, Delta Smelt, and Green Sturgeon

Directory of Open Access Journals (Sweden)

Joshua A. Israel

2011-04-01

Full Text Available Many native fishes in the San Francisco Estuary and its watersheds have reached all-time low abundances. Some of these declining species (e.g., Chinook salmon Oncorhynchus tschawytscha have been under artificial propagation for decades. For others (e.g., delta smelt, Hypomesus transpacificus, and green sturgeon, Acipenser medirostris, this management option is just beginning to be discussed and implemented. Propagation strategies, in which organisms spend some portion of their lives in captivity, pose well-documented genetic and ecological threats to natural populations. Negative impacts of propagation have been documented for all Central Valley Chinook salmon runs, but limited efforts have been made to adapt hatchery operations to minimize the genetic and ecological threats caused by propagated fishes. A delta smelt propagation program is undergoing intensive design and review for operations and monitoring. However, if limiting factors facing this species in its estuarine habitat are not effectively addressed, captive propagation may not be a useful conservation approach, regardless of how carefully the propagation activity is designed or monitored. Scientifically defensible, ecologically based restoration programs that include monitoring and research aimed at quantifying natural population vital rates should be fully implemented before there is any attempt to supplement natural populations of delta smelt. Green sturgeon are also likely to face risks from artificial propagation if a large–scale program is implemented before this species’ limiting factors are better understood. In each of these cases, restoring habitats, and reducing loss from human actions, are likely to be the best strategy for rebuilding and supporting self–sustaining populations.

Ground motion modeling of the 1906 San Francisco earthquake II: Ground motion estimates for the 1906 earthquake and scenario events

Energy Technology Data Exchange (ETDEWEB)

Aagaard, B; Brocher, T; Dreger, D; Frankel, A; Graves, R; Harmsen, S; Hartzell, S; Larsen, S; McCandless, K; Nilsson, S; Petersson, N A; Rodgers, A; Sjogreen, B; Tkalcic, H; Zoback, M L

2007-02-09

We estimate the ground motions produced by the 1906 San Francisco earthquake making use of the recently developed Song et al. (2008) source model that combines the available geodetic and seismic observations and recently constructed 3D geologic and seismic velocity models. Our estimates of the ground motions for the 1906 earthquake are consistent across five ground-motion modeling groups employing different wave propagation codes and simulation domains. The simulations successfully reproduce the main features of the Boatwright and Bundock (2005) ShakeMap, but tend to over predict the intensity of shaking by 0.1-0.5 modified Mercalli intensity (MMI) units. Velocity waveforms at sites throughout the San Francisco Bay Area exhibit characteristics consistent with rupture directivity, local geologic conditions (e.g., sedimentary basins), and the large size of the event (e.g., durations of strong shaking lasting tens of seconds). We also compute ground motions for seven hypothetical scenarios rupturing the same extent of the northern San Andreas fault, considering three additional hypocenters and an additional, random distribution of slip. Rupture directivity exerts the strongest influence on the variations in shaking, although sedimentary basins do consistently contribute to the response in some locations, such as Santa Rosa, Livermore, and San Jose. These scenarios suggest that future large earthquakes on the northern San Andreas fault may subject the current San Francisco Bay urban area to stronger shaking than a repeat of the 1906 earthquake. Ruptures propagating southward towards San Francisco appear to expose more of the urban area to a given intensity level than do ruptures propagating northward.

Environmental assessment of polycyclic aromatic hydrocarbons (PAHs) in surface sediments of the Santander Bay, Northern Spain.

Science.gov (United States)

Viguri, J; Verde, J; Irabien, A

2002-07-01

Samples of intertidal surface sediments (0-2 cm) were collected in 17 stations of the Santander Bay, Cantabric Sea, Northern Spain. The concentrations of polycyclic aromatic hydrocarbons (PAHs), 16, were analysed by HPLC and MS detection. Surface sediments show a good linear correlation among the parameters of the experimental organic matter evaluation, where total carbon (TC) and loss on ignition (LOI) are approximately 2.5 and 5 times total organic carbon (TOC). A wide range of TOC from 0.08% to 4.1%, and a broad distribution of the sum of sigma16PAHs, from 0.02 to 344.6 microg/g d.w., which can be correlated by an exponential equation to the TOC, has been identified. A qualitative relationship may be established between the industrial input along the rivers and the concentration of sigma6PAHs in the sediments of the estuaries: Boo estuary (8404-4631 microg/g OC), Solia-San Salvador estuaries (305-113 microg/g OC) and Cubas estuary (31-32 microg/g OC). This work shows a dramatic change in the spatial distribution in the concentration of PAHs of intertidal surface sediments. The left edge of the Bay has the main traffic around the city and the major source of PAHs is from combustion processes and estuarine inputs, leading to medium values of PAHs in the sediments; the right edge of the Bay has much lesser anthropogenic activities leading to lower values of PAHs in sediments. The distribution of individual PAHs in sediments varies widely depending on their structure and molecular weight; the 4-6 ring aromatics predominate in polluted sediments due to their higher persistence. The isomer ratio does not allow any clear identification of the PAHs origin. Environmental evaluation according to Dutch guidelines and consensus sediment quality guidelines based on ecotoxicological data leads to the same conclusion, sediments in the Santander Bay show a very different environmental quality depending on the spatial position from heavily polluted/medium effects to non

Characterizing the parent and alkyl polycyclic aromatic hydrocarbons in the Pearl River Estuary, Daya Bay and northern South China Sea: Influence of riverine input

International Nuclear Information System (INIS)

Yuan, Ke; Wang, Xiaowei; Lin, Li; Zou, Shichun; Li, Yan; Yang, Qingshu; Luan, Tiangang

2015-01-01

Distributions of 31 parent polycyclic aromatic hydrocarbons (PAHs) and 29 alkyl PAHs in surface sediments of the Pearl River Estuary (PRE), Daya Bay (DYB) and northern South China Sea (SCS) were examined to study the influence of riverine input. It was found that the contributions of riverine input to sediment PAHs in PRE was much higher than other areas. However, higher proportion of alkyl PAHs and low molecular weight PAHs in DYB and the northern SCS was observed, indicating their different sources. Nevertheless, the sediment PAHs in PRE were heterogeneous and affected by the hydrodynamic conditions. The high molecular weight PAHs were dominant in PRE and enriched in the depositional area of suspended particular matter (SPM). Moreover, the concentration of PAHs in SPM was similar to those in surface sediments and dominated in water columns. Therefore, SPM played a very important role in transportation and distribution of PAHs in PRE. - Highlights: • EPA 16 PAHs contributed a small amount of total PAHs. • Alkyl PAHs showed different behaviors from parent PAHs. • High weight PAHs preferably indicated riverine input. • PAHs distribution in sediment was related with the suspended particle deposition. - Suspended particular matter played a very important role in distribution of PAHs in tide-dominated estuary and alkyl PAHs showed different behavior from parent PAHs

Acquired Color Vision Defects and Hexane Exposure: A Study of San Francisco Bay Area Automotive Mechanics.

Science.gov (United States)

Beckman, Stella; Eisen, Ellen A; Bates, Michael N; Liu, Sa; Haegerstrom-Portnoy, Gunilla; Hammond, S Katharine

2016-06-01

Occupational exposure to solvents, including n-hexane, has been associated with acquired color vision defects. Blue-yellow defects are most common and may be due to neurotoxicity or retinal damage. Acetone may potentiate the neurotoxicity of n-hexane. We present results on nonhexane solvent and hexane exposure and color vision from a cross-sectional study of 835 automotive repair workers in the San Francisco Bay Area, California (2007-2013). Cumulative exposure was estimated from self-reported work history, and color vision was assessed using the Lanthony desaturated D-15 panel test. Log-binomial regression was used to estimate prevalence ratios for color vision defects. Acquired color vision defects were present in 29% of participants, of which 70% were blue-yellow. Elevated prevalence ratios were found for nonhexane solvent exposure, with a maximum of 1.31 (95% confidence interval (CI): 0.86, 2.00) for blue-yellow. Among participants aged ≤50 years, the prevalence ratio for blue-yellow defects was 2.17 (95% CI: 1.03, 4.56) in the highest quartile of nonhexane solvent exposure and 1.62 (95% CI: 0.97, 2.72) in the highest category of exposure to hexane with acetone coexposure. Cumulative exposures to hexane and nonhexane solvents in the highest exposure categories were associated with elevated prevalence ratios for color vision defects in younger participants. © The Author 2016. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Gas exchange rates across the sediment-water andd air-water interfaces in south San Francisco Bay

International Nuclear Information System (INIS)

Hartman, B.; Hammond, D.E.

1984-01-01

Radon 222 concentrations in the water and sedimentary columns and radon exchange rates across the sediment-water and air-water interfaces have been measured in a section of south San Francisco Bay. Two independent methods have been used to determine sediment-water exchange rates, and the annual averages of these methods agree within the uncertainity of the determinations, about 20%. The annual average of bethic fluxes from shoal areas is nearly a factor of 2 greater than fluxes from the channel areas. Fluxes from the shoal and channel areas exceed those expected from simple molecular diffusion by factors of 4 and 2, respectively, apparently due to macrofaunal irrigation. Values of the gas transfer coefficient for radon exchange across the air-water inteface were determined by constructing a radon mass balance for the water column and by direct measurement using floating chambers. The chamber method appears to yield results which are too high. Transfer coefficients computed using the mass balance method range from 0.4 m/day to 1.8 m/day, with a 6-year average of 1.0 m/day. Gas exchange is linearly dependent upon wind speed over a wind speed range of 3.2--6.4 m/s, but shows no dependence upon current velocity. Gas transfer coefficients predicted from an empirical relationship between gas exchange rates and wind speed observed in lakes and the oceans are within 30% of the coefficients determined from the radon mass balance and are considerably more accurate than coefficients predicted from theoretical gas exchange models

Acoustic Doppler velocimeter backscatter for quantification of suspended sediment concentration in South San Francisco Bay, USA

Science.gov (United States)

Öztürk, Mehmet; Work, Paul A.

2016-01-01

A data set was acquired on a shallow mudflat in south San Francisco Bay that featured simultaneous, co-located optical and acoustic sensors for subsequent estimation of suspended sediment concentrations (SSC). The optical turbidity sensor output was converted to SSC via an empirical relation derived at a nearby site using bottle sample estimates of SSC. The acoustic data was obtained using an acoustic Doppler velocimeter. Backscatter and noise were combined to develop another empirical relation between the optical estimates of SSC and the relative backscatter from the acoustic velocimeter. The optical and acoustic approaches both reproduced similar general trends in the data and have merit. Some seasonal variation in the dataset was evident, with the two methods differing by greater or lesser amounts depending on which portion of the record was examined. It is hypothesized that this is the result of flocculation, affecting the two signals by different degrees, and that the significance or mechanism of the flocculation has some seasonal variability. In the earlier portion of the record (March), there is a clear difference that appears in the acoustic approach between ebb and flood periods, and this is not evident later in the record (May). The acoustic method has promise but it appears that characteristics of flocs that form and break apart may need to be accounted for to improve the power of the method. This may also be true of the optical method: both methods involve assuming that the sediment characteristics (size, size distribution, and shape) are constant.

Gas exchange rates across the sediment-water and air-water interfaces in south San Francisco Bay

Science.gov (United States)

Hartman, Blayne; Hammond, Douglas E.

1984-01-01

Radon 222 concentrations in the water and sedimentary columns and radon exchange rates across the sediment-water and air-water interfaces have been measured in a section of south San Francisco Bay. Two independent methods have been used to determine sediment-water exchange rates, and the annual averages of these methods agree within the uncertainty of the determinations, about 20%. The annual average of benthic fluxes from shoal areas is nearly a factor of 2 greater than fluxes from the channel areas. Fluxes from the shoal and channel areas exceed those expected from simple molecular diffusion by factors of 4 and 2, respectively, apparently due to macrofaunal irrigation. Values of the gas transfer coefficient for radon exchange across the air-water interface were determined by constructing a radon mass balance for the water column and by direct measurement using floating chambers. The chamber method appears to yield results which are too high. Transfer coefficients computed using the mass balance method range from 0.4 m/day to 1.8 m/day, with a 6-year average of 1.0 m/day. Gas exchange is linearly dependent upon wind speed over a wind speed range of 3.2–6.4 m/s, but shows no dependence upon current velocity. Gas transfer coefficients predicted from an empirical relationship between gas exchange rates and wind speed observed in lakes and the oceans are within 30% of the coefficients determined from the radon mass balance and are considerably more accurate than coefficients predicted from theoretical gas exchange models.

Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

Science.gov (United States)

Lucas, L.V.; Koseff, Jeffrey R.; Monismith, Stephen G.; Thompson, J.K.

2009-01-01

A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions. ?? 2008 Elsevier B.V.

Grain-size data from vibracores collected in 2014 from Barnegat Bay, New Jersey

Data.gov (United States)

Department of the Interior — In response to the 2010 Governor’s Action Plan to clean up the Barnegat Bay–Little Egg Harbor (BBLEH) estuary in New Jersey, the U.S. Geological Survey (USGS)...

Contribution of Cultural Eutrophication to Marsh Loss in Jamaica Bay (NY)

Science.gov (United States)

Loss of salt marsh area in the Jamaica Bay Estuary (NY) has accelerated in recent years, with loss rates as high as 45 acres per year. A contributing factor to this acceleration is likely cultural eutrophication due to over 6 decades of sewage effluent inputs. We examined marsh...

Evaluation of mercury, selenium and methylmercury in fish consumed by Santos Bay communities, Sao Paulo, Brazil

Energy Technology Data Exchange (ETDEWEB)

Farias, Luciana A.; Favaro, Deborah I.T. [Instituto de Pesquisas Energeticas e Nucleares (IPEN), Sao Paulo, SP (Brazil)]. E-mail: lufarias@usp.br; Azevedo, Juliana de S.; Braga, Elisabete S. [Sao Paulo Univ., SP (Brazil). Inst. Oceanografico. Lab. de Nutrientes, Micronutrientes e Tracos no Mar (LABNUT)]. E-mail: juliana@io.usp.br

2005-07-01

In the present study, mercury and selenium levels were evaluated in fish tissues and fish organs in the Santos Bay, Sao Paulo State, southeastern Brazil. Santos Bay waters are polluted by the large industrial complex of Cubatao. The estuary system filters part of this pollution before it reaches the Bay. Mercury and methylmercury determination were performed using Cold Vapor Atomic Absorption Spectrometry (CV-AAS) and selenium determination by Instrumental Neutron Activation Analysis (INAA). Methodology validation for the determination of these elements was carried out by means of reference materials analyses. There was no significant correlation between mercury and selenium concentrations (n = 17, (r2 ) R2 = 0.3482, p = 0.1709) in Cathorops spixii (bagre amarelo)- Ariidae family and Centropomus sp. (robalo)- Centropomidae family livers. Mercury and methylmercury concentrations in muscle from carnivorous species: Ariidae Cathorops spixii (bagre amarelo), Scianidae Steliffer rastifer (cangoa) and Scianidae Paralonchurus brasiliensis (maria-luiza) were determined and discussed. Total mercury concentration in Ariidae Catharops spixii livers presented the highest Hg level (7.6 mg kg-1). Although the Santos Bay is less contaminated than the inner section of its estuary system (Cubatao), it presents signs of environmental impact. (author)

Evaluation of mercury, selenium and methylmercury in fish consumed by Santos Bay communities, Sao Paulo, Brazil

International Nuclear Information System (INIS)

Farias, Luciana A.; Favaro, Deborah I.T.; Azevedo, Juliana de S.; Braga, Elisabete S.

2005-01-01

In the present study, mercury and selenium levels were evaluated in fish tissues and fish organs in the Santos Bay, Sao Paulo State, southeastern Brazil. Santos Bay waters are polluted by the large industrial complex of Cubatao. The estuary system filters part of this pollution before it reaches the Bay. Mercury and methylmercury determination were performed using Cold Vapor Atomic Absorption Spectrometry (CV-AAS) and selenium determination by Instrumental Neutron Activation Analysis (INAA). Methodology validation for the determination of these elements was carried out by means of reference materials analyses. There was no significant correlation between mercury and selenium concentrations (n = 17, (r2 ) R2 = 0.3482, p = 0.1709) in Cathorops spixii (bagre amarelo)- Ariidae family and Centropomus sp. (robalo)- Centropomidae family livers. Mercury and methylmercury concentrations in muscle from carnivorous species: Ariidae Cathorops spixii (bagre amarelo), Scianidae Steliffer rastifer (cangoa) and Scianidae Paralonchurus brasiliensis (maria-luiza) were determined and discussed. Total mercury concentration in Ariidae Catharops spixii livers presented the highest Hg level (7.6 mg kg-1). Although the Santos Bay is less contaminated than the inner section of its estuary system (Cubatao), it presents signs of environmental impact. (author)

Steam, solarization, and tons of prevention: the San Francisco Public Utilities Commission's fight to contain Phytophthoras in San Francisco Bay area restoration sites

Science.gov (United States)

Greg Lyman; Jessica Appel; Mia Ingolia; Ellen Natesan; Joe Ortiz

2017-01-01

To compensate for unavoidable impacts associated with critical water infrastructure capital improvement projects, the San Francisco Public Utilities Commission (SFPUC) restored over 2,050 acres of riparian, wetland, and upland habitat on watershed lands in Alameda, Santa Clara, and San Mateo Counties. Despite strict bio-sanitation protocols, plant pathogens (...

Temporal changes in carbon and nitrogen stable isotope ratios of macrozoobenthos on an artificial tidal flat facing a hypertrophic canal, inner Tokyo Bay

International Nuclear Information System (INIS)

Kanaya, Gen; Nakamura, Yasuo; Koizumi, Tomoyoshi; Yamada, Katsumasa; Koshikawa, Hiroshi; Kohzu, Ayato; Maki, Hideaki

2013-01-01

Highlights: • Temporal changes in food web structure were analyzed in a tidal flat in a hypertrophic coastal bay. • Microphytobenthos mainly supported the benthic food web throughout seasons. • Phytoplankton and terrestrial detritus were utilized after red tides and urban runoffs. • Seasonal changes in consumer-δ 15 N was much larger in inner Tokyo Bay than in other estuaries. • This study showed specific characteristics of benthic food web in highly urbanized estuaries. -- Abstract: Temporal changes in benthic food web structure were analyzed in an artificial tidal flat in inner Tokyo Bay, Japan, using carbon and nitrogen stable isotope ratios (δ 13 C and δ 15 N). Microphytobenthos were the most important food sources of macrozoobenthos, due to high microphytobenthic biomass on the tidal flat, while phytoplankton in canal water (canal POM PP ), terrestrial materials from urban surface runoff (canal POM TM ), and marsh plants were less important. Dietary contribution of microphytobenthos was highest in April to June, while decreased towards December owing to the supply of canal POM PP and canal POM TM following red tides and heavy rainfall events in summer to fall. Temporal changes in δ 15 N (Δδ 15 N) of consumer corresponded well to the 15 N-enrichment in canal POM PP in summer. A meta-analysis showed that the consumer-Δδ 15 N was considerably larger in inner Tokyo Bay than those in other estuaries, which may be a specific characteristic of benthic food web in highly urbanized estuaries

Ground-motion modeling of the 1906 San Francisco Earthquake, part II: Ground-motion estimates for the 1906 earthquake and scenario events

Science.gov (United States)

Aagaard, Brad T.; Brocher, T.M.; Dolenc, D.; Dreger, D.; Graves, R.W.; Harmsen, S.; Hartzell, S.; Larsen, S.; McCandless, K.; Nilsson, S.; Petersson, N.A.; Rodgers, A.; Sjogreen, B.; Zoback, M.L.

2008-01-01

We estimate the ground motions produce by the 1906 San Francisco earthquake making use of the recently developed Song et al. (2008) source model that combines the available geodetic and seismic observations and recently constructed 3D geologic and seismic velocity models. Our estimates of the ground motions for the 1906 earthquake are consistent across five ground-motion modeling groups employing different wave propagation codes and simulation domains. The simulations successfully reproduce the main features of the Boatwright and Bundock (2005) ShakeMap, but tend to over predict the intensity of shaking by 0.1-0.5 modified Mercalli intensity (MMI) units. Velocity waveforms at sites throughout the San Francisco Bay Area exhibit characteristics consistent with rupture directivity, local geologic conditions (e.g., sedimentary basins), and the large size of the event (e.g., durations of strong shaking lasting tens of seconds). We also compute ground motions for seven hypothetical scenarios rupturing the same extent of the northern San Andreas fault, considering three additional hypocenters and an additional, random distribution of slip. Rupture directivity exerts the strongest influence on the variations in shaking, although sedimentary basins do consistently contribute to the response in some locations, such as Santa Rosa, Livermore, and San Jose. These scenarios suggest that future large earthquakes on the northern San Andreas fault may subject the current San Francisco Bay urban area to stronger shaking than a repeat of the 1906 earthquake. Ruptures propagating southward towards San Francisco appear to expose more of the urban area to a given intensity level than do ruptures propagating northward.

Long time-series of turbid coastal water using AVHRR: an example from Florida Bay, USA

Science.gov (United States)

Stumpf, Richard P.; Frayer, M. L.

1997-02-01

The AVHRR can provide information on the reflectance of turbid case II water, permitting examination of large estuaries and plumes from major rivers. The AVHRR has been onboard several NOAA satellites, with afternoon overpasses since 1981, offering a long time-series to examine changes in coastal water. We are using AVHRR data starting in December 1989, to examine water clarity in Florida Bay, which has undergone a decline since the late 1980's. The processing involves obtaining a nominal reflectance for red light with standard corrections including those for Rayleigh and aerosol path radiances. Established relationships between reflectance and the water properties being measured in the Bay provide estimates of diffuse attenuation and light limitation for phytoplankton and seagrass productivity studies. Processing also includes monthly averages of reflectance and attenuation. The AVHRR data set describes spatial and temporal patterns, including resuspension of bottom sediments in the winter, and changes in water clarity. The AVHRR also indicates that Florida Bay has much higher reflectivity relative to attenuation than other southeastern US estuaries.

Application of Computer-Aided Tomography (CT) Technology to Visually Compare Belowground Components of Salt Marshes in Jamaica Bay and Long Island, New York

Science.gov (United States)