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Sample records for deuterated isotopomers cd3i

  1. Interpretation of the vibrational energy level structure of the astructural molecular ion H5 + and all of its deuterated isotopomers

    Science.gov (United States)

    Sarka, János; Császár, Attila G.

    2016-04-01

    Variational nuclear motion computations, employing an exact kinetic energy operator and two different potential energy surfaces, are performed to study the first 60 vibrational states of the molecular ion H 5+ ≡ [H2-H-H2]+ and all of its deuterated isotopologues and isotopomers, altogether 12 species. Detailed investigation of the vibrational wavefunctions mostly results in physically intuitive labels not only for the fundamentals but also for the overtone and combination states computed. The torsional motion associated with the left and right diatomics appears to be well separated from the other vibrational degrees of freedom for all species. The unusual structure of the higher-lying bending states and the heavy mixing of the internal motions is partly due to the astructural character of all these molecular ions. The existence of distinct isotopomers in the H 5 - n Dn + , n = 1-4 cases, in the energy range studied, is confirmed. Two rules determine the stability order of the isotopomers: first, when possible, H prefers to stay in the middle of the ions rather than at the sides, and, second, the isotopomer with a homonuclear diatomic at the side is always lower in energy. The large number of precise vibrational energies of the present study, as well as the detailed assignment of the states, should serve as benchmarks for future studies by more approximate nuclear-motion treatments, such as diffusion Monte Carlo and multiconfiguration time-dependent Hartree.

  2. Deuteration of lidocaine

    Energy Technology Data Exchange (ETDEWEB)

    Haedener, A.

    1988-01-01

    Stepwise deuteration of the acidic methylene group of lidocaine on a large scale using a moderate excess of /sup 2/H/sub 2/O in triethylaminepyridine at 200/sup 0/ is described. The efficient and economical preparation of bideuterated lidocaine facilitates the use of this compound as an excellent internal standard in lidocaine determination or as a tracer in lidocaine pharmacokinetics.

  3. Numerical bias estimation for mass spectrometric mass isotopomer analysis.

    Science.gov (United States)

    Yang, Tae Hoon; Bolten, Christoph J; Coppi, Maddalena V; Sun, Jun; Heinzle, Elmar

    2009-05-15

    Mass spectrometric (MS) isotopomer analysis has become a standard tool for investigating biological systems using stable isotopes. In particular, metabolic flux analysis uses mass isotopomers of metabolic products typically formed from (13)C-labeled substrates to quantitate intracellular pathway fluxes. In the current work, we describe a model-driven method of numerical bias estimation regarding MS isotopomer analysis. Correct bias estimation is crucial for measuring statistical qualities of measurements and obtaining reliable fluxes. The model we developed for bias estimation corrects a priori unknown systematic errors unique for each individual mass isotopomer peak. For validation, we carried out both computational simulations and experimental measurements. From stochastic simulations, it was observed that carbon mass isotopomer distributions and measurement noise can be determined much more precisely only if signals are corrected for possible systematic errors. By removing the estimated background signals, the residuals resulting from experimental measurement and model expectation became consistent with normality, experimental variability was reduced, and data consistency was improved. The method is useful for obtaining systematic error-free data from (13)C tracer experiments and can also be extended to other stable isotopes. As a result, the reliability of metabolic fluxes that are typically computed from mass isotopomer measurements is increased.

  4. DNP with the free radicals deuterated TEMPO and deuterated oxo-TEMPO

    Science.gov (United States)

    van den Brandt, B.; Bunyatova, E. I.; Hautle, P.; Konter, J. A.

    2004-06-01

    The results of measurements performed to assess the potential of deuterated TEMPO and deuterated oxo-TEMPO for DNP are presented. These free radicals became available only recently. Polarization and relaxation processes of protons and deuterons in various deuterated alcohols and deuterated polymers have been investigated. More than 40% deuteron polarization has been obtained in samples of fully deuterated polystyrene.

  5. DNP with the free radicals deuterated TEMPO and deuterated oxo-TEMPO

    Energy Technology Data Exchange (ETDEWEB)

    Brandt, B. van den E-mail: ben.vandenbrandt@psi.ch; Bunyatova, E.I.; Hautle, P.; Konter, J.A

    2004-06-21

    The results of measurements performed to assess the potential of deuterated TEMPO and deuterated oxo-TEMPO for DNP are presented. These free radicals became available only recently. Polarization and relaxation processes of protons and deuterons in various deuterated alcohols and deuterated polymers have been investigated. More than 40% deuteron polarization has been obtained in samples of fully deuterated polystyrene.

  6. Synthesis of selectively deuterated alkanes

    International Nuclear Information System (INIS)

    Ohta, Nobuaki; Kido, Kenichi; Ichikawa, Takahisa

    1991-01-01

    Position-specifically deuterated three n-hexanes and three n-octanes were synthesized and their percent deuterations were measured by mass spectrometry. n-Hexane-1,1,1,6,6,6-d 6 ; n-hexane-2,2,5,5-d 4 and n-octane-1,1,1,8,8,8-d 8 were synthesized by lithium aluminium deuteride as key-step reactions and their percent deuterations were over 99%. The percent deuteration of n-octane-2,2,7,7-d 4 of which deuterium atoms were inserted into its carbon skeleton by deuterium exchange with base catalyst was 95%. n-Hexane-3,3,4,4-d 4 and n-octane-4,4,5,5-d 4 were obtained by deuterium addition with Wilkinson catalyst to triple bonds of 3-hexyne and 4-octyne, respectively, and their percent deuteration were no more than 80%. The causes for their relatively low deuteration were examined from reaction mechanisms. (author)

  7. Synthesis of deuterium-labelled isotopomer of deferasirox.

    Science.gov (United States)

    Havaldar, Freddy H; Dabholkar, Bhushan Vasant; Mule, Ganesh Baban; Kulkarni, Suhas

    2015-04-01

    A d4 -labeled isotopomer of deferasirox was synthesized as internal standard for use in a LC/mass spectroscopy (MS)/MS method developed for the simultaneous quantitative determination of deferasirox in human serum. d4 -deferasirox was synthesized from d8 -toluene. Copyright © 2015 John Wiley & Sons, Ltd.

  8. Continuous measurements of nitrous oxide isotopomers during incubation experiments

    Science.gov (United States)

    Winther, Malte; Balslev-Harder, David; Christensen, Søren; Priemé, Anders; Elberling, Bo; Crosson, Eric; Blunier, Thomas

    2018-02-01

    Nitrous oxide (N2O) is an important and strong greenhouse gas in the atmosphere. It is produced by microbes during nitrification and denitrification in terrestrial and aquatic ecosystems. The main sinks for N2O are turnover by denitrification and photolysis and photo-oxidation in the stratosphere. In the linear N = N = O molecule 15N substitution is possible in two distinct positions: central and terminal. The respective molecules, 14N15N16O and 15N14N16O, are called isotopomers. It has been demonstrated that N2O produced by nitrifying or denitrifying microbes exhibits a different relative abundance of the isotopomers. Therefore, measurements of the site preference (difference in the abundance of the two isotopomers) in N2O can be used to determine the source of N2O, i.e., nitrification or denitrification. Recent instrument development allows for continuous position-dependent δ15N measurements at N2O concentrations relevant for studies of atmospheric chemistry. We present results from continuous incubation experiments with denitrifying bacteria, Pseudomonas fluorescens (producing and reducing N2O) and Pseudomonas chlororaphis (only producing N2O). The continuous measurements of N2O isotopomers reveals the transient isotope exchange among KNO3, N2O, and N2. We find bulk isotopic fractionation of -5.01 ‰ ± 1.20 for P. chlororaphis, in line with previous results for production from denitrification. For P. fluorescens, the bulk isotopic fractionation during production of N2O is -52.21 ‰ ± 9.28 and 8.77 ‰ ± 4.49 during N2O reduction.The site preference (SP) isotopic fractionation for P. chlororaphis is -3.42 ‰ ± 1.69. For P. fluorescens, the calculations result in SP isotopic fractionation values of 5.73 ‰ ± 5.26 during production of N2O and 2.41 ‰ ± 3.04 during reduction of N2O. In summary, we implemented continuous measurements of N2O isotopomers during incubation of denitrifying bacteria and believe that similar experiments will lead to a better

  9. Heterologous expression of a deuterated membrane-integrated receptor and partial deuteration in methylotrophic yeasts

    International Nuclear Information System (INIS)

    Massou, S.; Puech, V.; Talmont, F.; Demange, P.; Lindley, N.D.; Tropis, M.; Milon, A.

    1999-01-01

    Methylotrophic yeast has previously been shown to be an excellent system for the cost-effective production of perdeuterated biomass and for the heterologous expression of membrane receptors. A protocol for the expression of 85% deuterated, functional human μ-opiate receptor was established. For partially deuterated biomass, deuteration level and distribution were determined for fatty acids, amino acids and carbohydrates. It was shown that prior to biosynthesis of lipids and amino acids (and of carbohydrates, to a lower extent), exchange occurs between water and methanol hydrogen atoms, so that 80%-90% randomly deuterated biomass and over-expressed proteins may be obtained using only deuterated water

  10. Continuous measurements of nitrous oxide isotopomers during incubation experiments

    DEFF Research Database (Denmark)

    Winther, Malte Nordmann; Balslev-Harder, David; Christensen, Søren

    2016-01-01

    Nitrous oxide (N2O) is an important and strong greenhouse gas in the atmosphere and part of a feed-back loop with climate. N2O is produced by microbes during nitrification and denitrification in terrestrial and aquatic ecosystems. The main sinks for N2O are turnover by denitrification...... and photolysis and photo-oxidation in the stratosphere. The position of the isotope 15N in the linear N = N = O molecule can be distinguished between the central or terminal position (isotopomers of N2O). It has been demonstrated that nitrifying and denitrifying microbes have a different relative preference...

  11. Synthesis and characterization of deuterated polyethylene

    International Nuclear Information System (INIS)

    Jia Xianbin; Luo Xuan; Chang Guanjun; Du Kai; Zhang Lin; Xie Zhengwei; Li Xinjuan; Lu Zaijun

    2009-01-01

    Due to its remarkable isotope effects, excellent kinetic stability towards C-D bond break, high degree of deuteration, and being non-radioactive, deuterated polyethylene (d-PE) is widely used in many fields, such as in inertially confined fusion (ICF) as target material, in production of low loss plastic optical fibers, and in study of the compatibility of different polymers. For the necessary of ICF, the d-PE was synthesized by the anionic polymerization and palladium-catalyzed hydrogenation. Furthermore, by the method of FTIR, 1H NMR and GPC, the deuterated ratio and structure of d-PE have been characterized. The results show that the d-PE has the high deuterated ratio and molecular weight, narrow molecular-weight distribution, the polymer material fits the basic necessary of ICF. (authors)

  12. Oscillator Strengths for Rydberg Transitions in CO and Its Isotopomers

    Science.gov (United States)

    Sheffer, Y.; Federman, S. R.; Eidelsberg, M.; Lemaire, J. L.; Fillion, J. H.; Rostas, F.; Ruiz, J.

    2005-05-01

    Precise knowledge of CO oscillator strengths (f-values) is an important ingredient in modeling this molecule's interstellar distribution, owing to line absorption that dominates CO's photodissociation. High-resolution (R = 25-60,000) FUV absorption spectroscopy from the Super-ACO synchrotron at Orsay, France, is employed to measure new f-values for three CO isotopomers: 12C16O, 13C16O, and 13C18O. We use the f-value of the E-X (0-0) band at 1076 Å as the calibrator of CO column density. A cluster of four interacting Rydberg states between 968-970 Å, K-X (0-0) + L-X (0-0) + L'-X (1-0) + E-X (6-0), is successfully disentangled and modeled by taking into account state interactions according to their mixing coefficients. The derived f-values agree with the larger values found in previous lab work, and with values derived from our FUSE interstellar spectra. Other Rydberg bands are being analysed, including W-X (v'-0; v' = 0 to 3) between 925 and 972 Å, E-X (1-0) at 1051 Å, and B-X (6-0) at 1002 Å, with the last showing marked predissociation lifetime variations from one isotopomer to another. Final f-values will be compared with available results. The authors acknowledge the support of the LURE-SuperACO synchrotron facility through time allocation and the SU5 beam-line team. This work was funded in part by NASA and the CNRS-PCMI program.

  13. Synthesis and properties of deuterated polystyrene

    International Nuclear Information System (INIS)

    Liu Chang; Jin Rong; Xu Yewei; Zhang Lin; Yan Hongwei; Du Kai; Wei Chengfu

    2012-01-01

    Deuterated poly(vinylcyclohexane) (D-PVCH, C 8 H 8 D 6 ) was successfully prepared via deuterated catalytic technology of polystyrene (PS). The structure of D-PVCH was characterized by FT-IR and 1 HNMR spectroscopy, and the results show good agreement with the proposed structure and the deuterated ratio is 41.5%. DSC and TG analyses of the D-PVCH show that D-PVCH possesses good thermal stability (glass transition temperature of 125 ℃, 5% weight loss temperature of 403 ℃). Additionally, D-PVCH dissolves in common solvents such as petroleum ether, cyclohexane and toluene at room temperature. Compared with PS, D-PVCH possesses better thermal stability and improved solubility. (authors)

  14. Determination of isotopomers in pools of molecules with polyisotopic elements

    International Nuclear Information System (INIS)

    Zyakun, A.M.; Brenninkmeijer, C.A.M.

    2002-01-01

    Polyisotopic element atoms that are present in a molecule form a pool of isotopomer molecules. Mono- and polyisotopomers are distinguished depending on the quantity of atoms of polyisotopic elements. Methodical approaches have been considered for the quantitative determination of the isotope composition of an element included in mono- and polyisotopic molecules. A possibility of the equally probable (homogeneous) and non-equally probable (non-homogeneous) distribution of isotopes of a polyisotopic element, the atoms of which have different positions in the molecule of polyisotopomer, has been shown. Factors disturbing the homogeneous distribution of isotopes of the element in the polyisotopomer pool have been revealed. When a polyisotopomer is involved in a mass-dependent process or reaction, the homogeneity of isotope distribution of the element is disturbed both in the residual and newly formed pools of polyisotopomer. By the example of CO 2 (polyisotopomer by oxygen) it has been shown that one can judge of the history of the analyzed pool formation by distribution of oxygen isotopes within this pool. The isotope content in the oxygen sites of polyisotopomer is a diagnostic feature of CO 2 involvement in the efflux from a reservoir or influx to the analyzed reservoir from an external source. (author)

  15. Identification of beryllium hydride isotopomer lines in sunspot umbral spectra

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    Shanmugavel R.

    2008-01-01

    Full Text Available A high resolution spectrum of FTS sunspot umbra of NSO/Kitt Peak was used to conduct a search for the molecular absorption lines due to BeH, BeD and BeT isotopomers. Analysis led to estimates of identification of the molecular lines of bands A - X (0,0, (1,1 and (2,2 for BeH, A - X (0,0, (1,1, (2,2 and (3,3 for BeD and of A - X (0,0, (1,1 and (2,2 for BeT. Among the identified lines, those which are well resolved were selected for measurements to calculate equivalent widths. The values of effective rotational temperature T were estimated for bands A - X(1,1 and (2,2 of BeH, A - X(1,1 of BeD and A - X(2,2 of BeT to be 4228K, 4057K, 3941K and 3243K respectively.

  16. Identification of Beryllium Hydride Isotopomer Lines in Sunspot Umbral Spectra

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    Shanmugavel, R.

    2008-06-01

    Full Text Available A high resolution spectrum of FTS sunspot umbra of NSO/Kitt Peak was used to conduct a search for the molecular absorption lines due to BeH, BeD and BeT isotopomers. Analysis led to estimates of identification of the molecular lines of bands A - X (0,0, (1,1 and (2,2 for BeH, A - X (0,0, (1,1, (2,2 and (3,3 for BeD and of A - X (0,0, (1,1 and (2,2 for BeT. Among the identified lines, those which are well resolved were selected for measurements to calculate equivalent widths. The values of effective rotational temperature T were estimated for bands A - X(1,1 and (2,2 of BeH, A - X(1,1 of BeD and A - X(2,2 of BeT to be 4228K, 4057K, 3941K and 3243K respectively.

  17. Deuterated drugs; updates and obviousness analysis.

    Science.gov (United States)

    Timmins, Graham S

    2017-12-01

    The pharmacokinetics and/or toxicity of many known drugs can be modified by selective deuteration, an area of significant commercial interest and scientific and regulatory progress. Areas covered: This review firstly discusses recent developments in deuterated drugs including the FDA approval of deutetrabenazine. Secondly, it discusses 35 U.S.C. §103 'obviousness' as it relates to recent patent prosecution, and also to Inter Partes Review (IPR). IPR is a new post-award review of patentability under §102 or §103, two IPR petitions upon deuterated drugs have been instituted and included §103 arguments. Finally, an extended analysis of §103 obviousness based upon the practices of major pharmaceutical companies is provided, that supports rather late priority dates, while §102 is also discussed. Expert opinion: The total value of transactions involving deuterated drugs is close to $5 billion. While the importance of §103 'obviousness' rejections remains in patent applications under current prosecution, IPR of issued patents is developing and will affect likely affect §103 interpretations in this area. However, patents are still issuing with later priority dates, and further litigation will likely occur.

  18. Methods for the synthesis of deuterated vinyl pyridine monomers

    Science.gov (United States)

    Hong, Kunlun; Yang, Jun; Bonnesen, Peter V

    2014-02-25

    Methods for synthesizing deuterated vinylpyridine compounds of the Formula (1), wherein the method includes: (i) deuterating an acyl pyridine of the Formula (2) in the presence of a metal catalyst and D.sub.2O, wherein the metal catalyst is active for hydrogen exchange in water, to produce a deuterated acyl compound of Formula (3); (ii) reducing the compound of Formula (3) with a deuterated reducing agent to convert the acyl group to an alcohol group, and (iii) dehydrating the compound produced in step (ii) with a dehydrating agent to afford the vinylpyridine compound of Formula (1). The resulting deuterated vinylpyridine compounds are also described.

  19. Modeling Non-Steady Isotopologue and Isotopomer Speciation and Fractionation during Denitrification in Soils

    Science.gov (United States)

    Maggi, F.; Riley, W. J.

    2009-12-01

    The composition and location of 15N atoms on N2O isotopomers and isotopologues during isotope speciation has been used to characterize soil biological N cycling and N2O surface emissions. Although there exist few experimental observations, no attempt has been made to model N2O isotopomer speciation. The mathematical treatment of biological kinetic reactions in isotopic applications normally makes use of first-order and quasi steady-state complexation assumptions without taking into account changes in enzyme concentration, reaction stoichiometry, and isotopologue and isotopomer speciation. When multiatomic isotopically-labeled reactants are used in a multi-molecurar reaction, these assumptions may fail since they always lead to a constant fractionation factor and cannot describe speciation of isotopologues and isotopomers. We have developed a mathematical framework that is capable of describing isotopologue and isotopmer speciation and fractionation under the assumption of non-steady complexation during biological kinetic reactions that overcome the limitations mentioned above. This framework was applied to a case study of non-steady (variable and inverse) isotopic effects observed during N2O production and consumption in soils. Our mathematical treatment has led to generalized kinetic equations which replicate experimental observations with high accuracy and help interpret non-steady isotopic effects and isotopologue and isotopomer speciation. The kinetic equations introduced and applied here have general validity in describing isotopic effects in any biochemical reactions by considering: changing enzyme concentrations, mass and isotope conservation, and reaction stoichiometry. The equations also describe speciation of any isotopologue and isotopomer product from any isotopologue and isotopmer reactant.

  20. Warm Deuteration of Hydrogen Cyanide in Orion

    Science.gov (United States)

    Marcelino, N.; Tercero, B.; Cernicharo, J.; Roueff, E.; Palau, A.; Goicoechea, J. R.; Herschel HEXOS Team

    2011-05-01

    Deuterium fractionation has been observed both in cold molecular clouds and in star forming regions. In the latter it should be a remnant from the earlier cold prestellar phase where, after being frozen onto dust grains, deuterated species are released during the switch-on of the protostar. However this mechanism does not explain the large deuteration observed at moderately warm regions such as the Orion Bar and the molecular Ridge. Using HIFI data from the Guaranteed Time Key Program ``Herschel observations of EXtra-Ordinary Sources (HEXOS)'', we have detected high-J DCN transitions, up to J=17-16, toward Orion KL. On the other hand, DNC is not detected within the HIFI frequency range. Furthermore, the DCN J=2-1, 2x2' maps observed with the IRAM 30m telescope show extended emission along the molecular filament revealing the moderate and warm conditions under DCN seems to be produced (Extended and Compact Ridge, Hot Core and Orion-S). On the other hand, DNC J=2--1 emission is much less extended and it does not show an emission peak at the KL position, like DCN, but toward an offset (-20'',-25'') from IRc2. In our analysis we have combined the HIFI data with that of the Orion surveys performed at the 30m, thus including a wide range of excitation conditions. In order to reproduce the observed profiles and compute column densities, we have used the LVG approximation and a source model with a three layer stratification for the Compact Ridge, Plateau and Hot Core components. The abundance ratio DCN/HCN is found to be an order of magnitude higher than the DNC/HNC one for the Compact Ridge and the Hot Core components (Tkin=100-300 K) while the opposite behaviour is obtained for the Extended Ridge (Tkin=60 K), suggesting different deuteration pathways for these two isomers. This study demonstrates that observations covering a wide range of excitation conditions are mandatory to better constrain the physical properties in such a complex region as Orion. This was possible

  1. Room temperature line lists for deuterated water

    Science.gov (United States)

    Kyuberis, Aleksandra A.; Zobov, Nikolay F.; Naumenko, Olga V.; Voronin, Boris A.; Polyansky, Oleg L.; Lodi, Lorenzo; Liu, Anwen; Hu, Shui-Ming; Tennyson, Jonathan

    2017-12-01

    Line lists are presented for six deuterated isotopologues of water vapor namely HD16O, HD17O, HD18O, D216O, D217O and D218O. These line lists are prepared using empirically-determined energy levels, where available, to provide transition frequencies and high-quality ab initio dipole moment surfaces to provide transition intensities. The reliability of the predicted intensities is tested by computing multiple line lists and analyzing the stability of the results. The resulting intensities are expected to be accurate to a few percent for well-behaved, stable transitions. Complete T = 296 K line lists are provided for each species.

  2. Mild Conditions for Deuteration of Primary and Secondary Arylamines for the Synthesis of Deuterated Optoelectronic Organic Molecules

    Directory of Open Access Journals (Sweden)

    Anwen M. Krause-Heuer

    2014-11-01

    Full Text Available Deuterated arylamines demonstrate great potential for use in optoelectronic devices, but their widespread utility requires a method for large-scale synthesis. The incorporation of these deuterated materials into optoelectronic devices also provides the opportunity for studies of the functioning device using neutron reflectometry based on the difference in the scattering length density between protonated and deuterated compounds. Here we report mild deuteration conditions utilising standard laboratory glassware for the deuteration of: diphenylamine, N-phenylnaphthylamine, N-phenyl-o-phenylenediamine and 1-naphthylamine (via H/D exchange in D2O at 80 °C, catalysed by Pt/C and Pd/C. These conditions were not successful in the deuteration of triphenylamine or N,N-dimethylaniline, suggesting that these mild conditions are not suitable for the deuteration of tertiary arylamines, but are likely to be applicable for the deuteration of other primary and secondary arylamines. The deuterated arylamines can then be used for synthesis of larger organic molecules or polymers with optoelectronic applications.

  3. Detecting plant-climate interactions over decades-millennia using NMR isotopomer analysis

    Science.gov (United States)

    Ehlers, Ina; Augusti, Angela; Köhler, Iris; Wieloch, Thomas; Zuidema, Pieter; Robertson, Iain; Nilsson, Mats; Marshall, John; Schleucher, Jürgen

    2016-04-01

    Increasing CO2 and climate change affect photosynthesis, which creates a critical influence on the global C cycle and on the future productivity of crops and forests. Manipulative experiments (e.g. FACE) impose step increases in [CO2], and are limited to few locations and to time spans of years, while responses over decades and centuries are critical for Earth system models. To overcome these limitations, we have developed a new method - isotopomer analysis - that allows deducing plant C metabolism by analysis of primary plant photosynthates (Ehlers et al., PNAS 2015, 15585) or tree rings. We apply the method to material from manipulation (CO2, T) experiments, and to remnant - including subfossil - plant material. Thus, metabolic responses can be identified in FACE experiments, and it can be tested to what degree these responses are maintained during gradual environmental changes over decades-millennia. Isotopomer proxies developed using FACE experiments can then be used to reconstruct physiological and climatic changes by retrospective analysis, thus bridging a gap between experimental plant sciences and paleo research. In experiments on annual plants, we have found that specific deuterium isotopomers in photosynthetic glucose reflect the ratio of oxygenation to carboxylation at Rubisco, a central metabolic branching that is the origin of the photorespiration flux in all C3 plants. We found that increasing atmospheric [CO2] over the 20th century has reduced the photorespiration / photosynthesis ratio in all investigated C3 species, with no evidence for acclimatory reactions by the plants. Results on the peat moss Spagnum fuscum suggest a mechanism for increasing peat accumulation rates, a major global C sink. For 12 tree species from five continents, we observe that the CO2 increase since industrialization has reduced the photorespiration / photosynthesis ratio. However, the observed reduction is ca. 50 % smaller than expected from CO2 manipulation experiments

  4. Deuteration of metals through electric discharges

    International Nuclear Information System (INIS)

    Balderas G, L.M.

    1995-01-01

    In this work deuteration of titanium and a stainless steel through electrical discharges in a vacuum chamber was performed at different thermodynamic conditions. The samples were plates of 0.03 x 4.5 x 54 cm. The titanium sample was first cleaning with chloroform. The oxide layer was removed by cleaning the sample with a 1:1:1 mixture of water, nitric acid and sulphuric acid. Later was rinsed in water and dried with acetone. Finally, was treated with HCl to form an hydride layer on the surface. The stainless steel sample was only cleaned with soap and cleaning with acetone. The samples were cleaning at low pressure for several days with high temperature short cycles. The deuterium was loaded to the chamber at room temperature having absorption on the titanium samples at 10 3 at 10 1 mbar. Afterwards that the samples were heated up at 330 C and was observed the deuterium absorption in the same pressure range. Forced deuteration through electrical discharges between the sample and the chamber was tried obtaining absorption in the range of 10 3 at 10 2 mbar, however the deuterium absorption only was observed in specific cases. In order to detect neutron emission or released particles in this experiment were used alanine detectors and series of plastic CR-39 and borate films. No neutron were detected in the passive systems used in the experiments. (Author)

  5. Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein

    Energy Technology Data Exchange (ETDEWEB)

    Shaikh, Afshan; Shaikh, Afshan S.; Tang, Yinjie; Mukhopadhyay, Aindrila; Keasling, Jay D.

    2008-06-27

    {sup 13}C-based metabolic flux analysis provides valuable information about bacterial physiology. Though many biological processes rely on the synergistic functions of microbial communities, study of individual organisms in a mixed culture using existing flux analysis methods is difficult. Isotopomer-based flux analysis typically relies on hydrolyzed amino acids from a homogeneous biomass. Thus metabolic flux analysis of a given organism in a mixed culture requires its separation from the mixed culture. Swift and efficient cell separation is difficult and a major hurdle for isotopomer-based flux analysis of mixed cultures. Here we demonstrate the use of a single highly-expressed protein to analyze the isotopomer distribution of amino acids from one organism. Using the model organism E. coli expressing a plasmid-borne, his-tagged Green Fluorescent Protein (GFP), we show that induction of GFP does not affect E. coli growth kinetics or the isotopomer distribution in nine key metabolites. Further, the isotopomer labeling patterns of amino acids derived from purified GFP and total cell protein are indistinguishable, indicating that amino acids from a purified protein can be used to infer metabolic fluxes of targeted organisms in a mixed culture. This study provides the foundation to extend isotopomer-based flux analysis to study metabolism of individual strains in microbial communities.

  6. Unraveling the metabolism of HEK-293 cells using lactate isotopomer analysis.

    Science.gov (United States)

    Henry, Olivier; Jolicoeur, Mario; Kamen, Amine

    2011-03-01

    HEK-293 is the most extensively used human cell line for the production of viral vectors and is gaining increasing attention for the production of recombinant proteins by transient transfection. To further improve the metabolic characterization of this cell line, we have performed cultures using ¹³C-labeled substrates and measured the resulting mass isotopomer distributions in lactate by LC/MS. Simultaneous metabolite and isotopomer balancing allowed improvement and validation of the metabolic model and quantification of key intracellular pathways. We have determined the amounts of glucose carbon channeled through the PPP, incorporated into the TCA cycle for energy production and lipids biosynthesis, as well as the cytosolic and mitochondrial malic enzyme fluxes. Our analysis also revealed that glutamine did not significantly contribute to lactate formation. An improved and quantitative understanding of the central carbon metabolism is greatly needed to pursue the rational development of engineering approaches at both the cellular and process levels.

  7. Synthesis and investigation of [Cp(PMe(3))Rh(H)(H(2))](+) and its partially deuterated and tritiated isotopomers: evidence for a hydride/dihydrogen structure.

    Science.gov (United States)

    Taw, Felicia L; Mellows, Heather; White, Peter S; Hollander, Frederick J; Bergman, Robert G; Brookhart, Maurice; Heinekey, D Michael

    2002-05-08

    Hydrogenolysis of [Cp(PMe(3))Rh(Me)(CH(2)Cl(2))](+)BAr'(4)(-) (4, Ar' = 3,5-C(6)H(3)(CF(3))(2)) in dichloromethane afforded the nonclassical polyhydride complex [Cp*PMe(3))Rh(H)(H(2))](+)BAr'(4)(-) (1), which exhibits a single hydride resonance at all accessible temperatures in the (1)H NMR spectrum. Exposure of solutions of 1 to D(2) or T(2) gas resulted in partial isotopic substitution in the hydride sites. Formulation of 1 as a hydride/dihydrogen complex was based upon T(1) (T(1)(min) = 23 ms at 150 K, 500 MHz), J(H-D) (ca. 10 Hz), and J(H-T) (ca. 70 Hz) measurements. The barrier (Delta G(++)) to exchange of hydride with dihydrogen sites was determined to be less than ca. 5 kcal/mol. Protonation of Cp(PMe(3))Rh(H)(2) (2) using H(OEt(2))(2)BAr'(4) resulted in binuclear species [(Cp(PMe(3))Rh(H))(2)(mu-H)](+)BAr'(4)(-) (3), which is formed in a reaction involving 1 as an intermediate. Complex 3 contains two terminal hydrides and one bridging hydride ligand which exchange with a barrier of 9.1 kcal/mol as observed by (1)H NMR spectroscopy. Additionally, the structures of 3 and 4, determined by X-ray diffraction, are reported.

  8. 'Isotopo' a database application for facile analysis and management of mass isotopomer data.

    Science.gov (United States)

    Ahmed, Zeeshan; Zeeshan, Saman; Huber, Claudia; Hensel, Michael; Schomburg, Dietmar; Münch, Richard; Eylert, Eva; Eisenreich, Wolfgang; Dandekar, Thomas

    2014-01-01

    The composition of stable-isotope labelled isotopologues/isotopomers in metabolic products can be measured by mass spectrometry and supports the analysis of pathways and fluxes. As a prerequisite, the original mass spectra have to be processed, managed and stored to rapidly calculate, analyse and compare isotopomer enrichments to study, for instance, bacterial metabolism in infection. For such applications, we provide here the database application 'Isotopo'. This software package includes (i) a database to store and process isotopomer data, (ii) a parser to upload and translate different data formats for such data and (iii) an improved application to process and convert signal intensities from mass spectra of (13)C-labelled metabolites such as tertbutyldimethylsilyl-derivatives of amino acids. Relative mass intensities and isotopomer distributions are calculated applying a partial least square method with iterative refinement for high precision data. The data output includes formats such as graphs for overall enrichments in amino acids. The package is user-friendly for easy and robust data management of multiple experiments. The 'Isotopo' software is available at the following web link (section Download): http://spp1316.uni-wuerzburg.de/bioinformatics/isotopo/. The package contains three additional files: software executable setup (installer), one data set file (discussed in this article) and one excel file (which can be used to convert data from excel to '.iso' format). The 'Isotopo' software is compatible only with the Microsoft Windows operating system. http://spp1316.uni-wuerzburg.de/bioinformatics/isotopo/. © The Author(s) 2014. Published by Oxford University Press.

  9. ‘Isotopo’ a database application for facile analysis and management of mass isotopomer data

    Science.gov (United States)

    Ahmed, Zeeshan; Zeeshan, Saman; Huber, Claudia; Hensel, Michael; Schomburg, Dietmar; Münch, Richard; Eylert, Eva; Eisenreich, Wolfgang; Dandekar, Thomas

    2014-01-01

    The composition of stable-isotope labelled isotopologues/isotopomers in metabolic products can be measured by mass spectrometry and supports the analysis of pathways and fluxes. As a prerequisite, the original mass spectra have to be processed, managed and stored to rapidly calculate, analyse and compare isotopomer enrichments to study, for instance, bacterial metabolism in infection. For such applications, we provide here the database application ‘Isotopo’. This software package includes (i) a database to store and process isotopomer data, (ii) a parser to upload and translate different data formats for such data and (iii) an improved application to process and convert signal intensities from mass spectra of 13C-labelled metabolites such as tertbutyldimethylsilyl-derivatives of amino acids. Relative mass intensities and isotopomer distributions are calculated applying a partial least square method with iterative refinement for high precision data. The data output includes formats such as graphs for overall enrichments in amino acids. The package is user-friendly for easy and robust data management of multiple experiments. Availability: The ‘Isotopo’ software is available at the following web link (section Download): http://spp1316.uni-wuerzburg.de/bioinformatics/isotopo/. The package contains three additional files: software executable setup (installer), one data set file (discussed in this article) and one excel file (which can be used to convert data from excel to ‘.iso’ format). The ‘Isotopo’ software is compatible only with the Microsoft Windows operating system. Database URL: http://spp1316.uni-wuerzburg.de/bioinformatics/isotopo/. PMID:25204646

  10. State of mixing of deuterated and non-deuterated block polymer chains

    International Nuclear Information System (INIS)

    Hasegawa, Hirokazu; Hashimoto, Takeji

    1984-01-01

    Prior to the small-angle neutron scattering study on the conformation of block polymer chains in the domain space, the state of mixing of two block polymers, an ordinary polystyrene-polyisoprene diblock polymer and a poly(deuterated styrene)-polyisoprene diblock polymer with a different molecular weight and composition, was investigated by a small-angle X-ray scattering (SAXS) technique. Only one kind of domain structure was observed for each blend, and the domain spacings obtained by SAXS were proportional to the two-thirds power of the number-average molecular weight of the blends (reduced to non-deuterated block polymer). The volume fractions of polystyrene domain in the blends evaluated by computer simulation of SAXS profiles well agreed with the values estimated from blend composition. All these facts suggest the molecular mixing of the two block polymers in the domain space. (author)

  11. Effect of deuteration on some structural parameters of methyl groups in proteins as evaluated by residual dipolar couplings

    International Nuclear Information System (INIS)

    Mittermaier, Anthony; Kay, Lewis E.

    2002-01-01

    One bond methyl 1 H- 13 C and 13 C methyl - 13 C scalar and residual dipolar couplings have been measured at sites in an 15 N, 13 C, ∼ 50% 2 H labeled sample of the B1 immunoglobulin binding domain of peptostreptococcal protein L to investigate changes in the structure of methyl groups in response to deuterium substitution. Both one bond methyl 1 H- 13 C and 13 C methyl - 13 C scalar coupling constants have been found to decrease slightly with increasing deuterium content. Previous studies have shown that 1 H- 13 C couplings in methyl groups are exquisitely sensitive to electronic structure, with decreases in coupling values as a function of deuteration consistent with a slight lengthening of the remaining H-C bonds. Changes in the H methyl C methyl C angle are found to be small, with average differences on the order of 0.3 ± 0.1 deg. and 0.4 ± 0.2 deg. between CH 3 , CH 2 D and CH 3 , CHD 2 isotopomers, respectively. Knowledge of methyl geometry is a prerequisite for the extraction of accurate dynamics parameters from spin relaxation studies involving these groups

  12. Fully deuterated microorganisms: Tools in magnetic resonance and neutron scattering

    International Nuclear Information System (INIS)

    Crespi, H.L.

    1988-01-01

    Current work at Argonne emphasizes the use of fully deuterated algae and cyanobacteria as tools in the study of photosynthesis and as a source of complex substrates for the culture of engineered overproducing bacteria. 17 refs., 1 fig., 1 tab

  13. Fully deuterated microorganisms: Tools in magnetic resonance and neutron scattering

    Energy Technology Data Exchange (ETDEWEB)

    Crespi, H.L.

    1988-01-01

    Current work at Argonne emphasizes the use of fully deuterated algae and cyanobacteria as tools in the study of photosynthesis and as a source of complex substrates for the culture of engineered overproducing bacteria. 17 refs., 1 fig., 1 tab.

  14. Deuteration effect on the rotary power of hydrogen bonded compounds

    Energy Technology Data Exchange (ETDEWEB)

    Kolbe, A.; Kolbe, A. (Akademie der Wissenschaften der DDR, Halle/Saale. Inst. fuer Biochemie der Pflanzen; Martin-Luther-Universitaet Halle-Wittenberg, Halle (German Democratic Republic). Sektion Chemie)

    1982-01-01

    The variation of the rotatory power caused by deuteration in menthol, isopulegol, ..cap alpha..-terpineol-(4), elemol, and diphenylacetyl-L-leucin has been investigated. The results and a brief discussion are given.

  15. Molecular spin conversion in solid deuterated methane.

    Science.gov (United States)

    Stachowiak, Piotr

    2011-02-28

    The spin conversion of methane molecules in pure deuterated methane crystals and CD(4)-Kr solid solution for a wide range of concentrations of krypton was investigated in the temperature range 1.5-10 K. The experiment was performed by use of a steady-state heat flow experimental setup for determination of the thermal conductivity, utilized in an unconventional way. The obtained results were discussed in the frame of the spin conversion model taking into account direct one-phonon processes and indirect librationally-activated processes. It was found that the conversion, both for pure and krypton doped crystals, is dominated by the one-phonon mechanism. However, the importance of the indirect processes increases rapidly with the temperature. The obtained results indicate that the krypton admixture does not change the values of energy levels of the spin-librational (spin-rotational) spectrum of the crystal. The presence of Kr in the structure of CD(4) enhances the intensity of the direct one-phonon spin conversion processes and weakens the indirect librationally-activated ones.

  16. Production of deuterated switchgrass by hydroponic cultivation.

    Science.gov (United States)

    Evans, Barbara R; Bali, Garima; Foston, Marcus; Ragauskas, Arthur J; O'Neill, Hugh M; Shah, Riddhi; McGaughey, Joseph; Reeves, David; Rempe, Caroline S; Davison, Brian H

    2015-07-01

    The bioenergy crop switchgrass was grown hydroponically from tiller cuttings in 50 % D 2 O to obtain biomass with 34 % deuterium substitution and physicochemical properties similar to those of H 2 O-grown switchgrass controls. Deuterium enrichment of biological materials can potentially enable expanded experimental use of small angle neutron scattering (SANS) to investigate molecular structural transitions of complex systems such as plant cell walls. Two key advances have been made that facilitate cultivation of switchgrass, an important forage and biofuel crop, for controlled isotopic enrichment: (1) perfusion system with individual chambers and (2) hydroponic growth from tiller cuttings. Plants were grown and maintained for several months with periodic harvest. Photosynthetic activity was monitored by measurement of CO2 in outflow from the growth chambers. Plant morphology and composition appeared normal compared to matched controls grown with H2O. Using this improved method, gram quantities of switchgrass leaves and stems were produced by continuous hydroponic cultivation using growth medium consisting of basal mineral salts in 50 % D2O. Deuterium incorporation was confirmed by detection of the O-D and C-D stretching peaks with FTIR and quantified by (1)H- and (2)H-NMR. This capability to produce deuterated lignocellulosic biomass under controlled conditions will enhance investigation of cell wall structure and its deconstruction by neutron scattering and NMR techniques.

  17. On the effective temperature of sunspot umbrae using beryllium hydride isotopomer lines

    Directory of Open Access Journals (Sweden)

    Sangeetha R.

    2009-01-01

    Full Text Available A search for fourteen bands of the visible and infrared systems of the beryllium hydride isotopomers, in addition to the previously identified bands A - X(0, 0; 1, 1; 2, 2 for BeH, A - X(0, 0; 1, 1; 2, 2 for BeD and A - X(0, 0; 1, 1; 2, 2 for BeT molecules was conducted. The equivalent widths were measured for the well isolated identified lines of the strongest band and the effective temperatures were estimated for the systems for which the presence of hints is confirmed.

  18. The structure of deuterated methane-hydrate

    Science.gov (United States)

    Gutt, C.; Asmussen, B.; Press, W.; Johnson, M. R.; Handa, Y. P.; Tse, J. S.

    2000-09-01

    We present the results of a high-resolution neutron diffraction experiment with a fully deuterated methane hydrate type I at temperatures of 2, 100, and 150 K. Precise crystallographic parameters of the ice-like D2O lattice and the thermal parameters of the encaged methane molecules have been obtained. The parameters of the host lattice differ only slightly from values found for hydrates with asymmetric guests included, which leads to the conclusion that the host lattice of structure I is only a little adaptive. At low temperatures (2 K) the methane molecules in both types of cages present in structure I occupy positions in the center of the cages. At higher temperatures the thermal parameters in both types of cages reflect the surrounding cage geometries or more precisely the translational potentials of the cages. The orientational scattering length density of the CD4 molecules has been analyzed in terms of a multipole expansion with symmetry adapted functions [Press and Hüller, Acta Crystallogr., Sect. A: Cryst. Phys., Diffr., Theor. Gen. Crystallogr. A29, 252 (1972); Press, ibid. A29, 257 (1972)]. In both types of cages we found only small modulations of a spherically symmetric scattering density accounting for almost free rotations of the methane molecules. The large and asymmetric cage leads to a somewhat more pronounced modulation of the orientational density than in the small dodecahedral cage. The orientational probability distribution function (PDF) remains nearly unchanged from 2 to 150 K. At 200 K we observed the time-resolved decomposition of the hydrate structure I into hexagonal ice Ih.

  19. Separation of deuteriated isotopomers of dopamine by ion-pair reversed-phase high-performance liquid chromatography

    International Nuclear Information System (INIS)

    Masters, C.F.; Markey, S.P.; Mefford, I.N.; Duncan, M.W.

    1988-01-01

    The ion-pair reversed-phase separation of dopamine and deuterium-substituted dopamine isotopomers is described. Chromatographic parameters and deuterium isotope effects governing the resolution are examined and compared to the factors regulating the resolution are examined and compared to the factors regulating the resolution of the chemically distinct entities dopamine, norepinephrine, and epinephrine. The potential utility of the [ 2 H 7 ]dopamine, isotopomer as an internal standard for the high-performance liquid chromatography analysis of dopamine is demonstrated by using aluminum oxide extraction prior to chromatographic separation

  20. The VA and VCD spectra of various isotopomers of L-alanine in aqueous solution

    DEFF Research Database (Denmark)

    Abdali, Salim; Jalkanen, Karl J.; Bohr, Henrik

    2002-01-01

    Density functional theory (DFT) at the Becke 3LYP level has been used to calculate the vibrational absorption (VA) and vibrational circular dichroism (VCD) spectra of various deuterated species Of L-alanine. The effect of replacing the methine hydrogen, CH1, the methyl group, CH3, and both...

  1. Testing odorant-receptor interaction theories in humans through discrimination of isotopomers

    Directory of Open Access Journals (Sweden)

    Mara Andrione

    2017-12-01

    Full Text Available Odour reception takes place on the olfactory receptor neuron membrane, where molecular receptors interact with volatile odorant molecules. This interaction is classically thought to rely on chemical and structural features of the odorant, e.g. size, shape, functional groups. However, this model does not allow formulating a correct prediction for the smell of an odorant, suggesting that other molecular properties may play a role in the odour transduction process. An alternative model of olfaction maintains that odorant receptors can probe not only the structural and chemical features, but also the molecular vibration spectrum of the odorants. This constitutes the so-called vibration model of olfaction. According to this model, two isotopomers of the same molecule, i.e. two forms of the same molecule, one unaltered and one in which one or more hydrogen atoms are substituted with deuterium – which are therefore structurally and chemically identical, but with different molecular vibration spectra – would interact differently with an olfactory receptor, producing different olfactory perceptions in the brain. Here, we report on a duo-trio discrimination experiment conducted on human subjects, testing isotopomer pairs that have recently been shown to be differentially encoded in the honeybee brain.

  2. Mathematical treatment of isotopologue and isotopomer speciation and fractionation in biochemical kinetics

    Science.gov (United States)

    Maggi, Federico; Riley, William J.

    2010-03-01

    We present a mathematical treatment of the kinetic equations that describe isotopologue and isotopomer speciation and fractionation during enzyme-catalyzed biochemical reactions. These equations, presented here with the name GEBIK (general equations for biochemical isotope kinetics) and GEBIF (general equations for biochemical isotope fractionation), take into account microbial biomass and enzyme dynamics, reaction stoichiometry, isotope substitution number, and isotope location within each isotopologue and isotopomer. In addition to solving the complete GEBIK and GEBIF, we also present and discuss two approximations to the full solutions under the assumption of biomass-free and enzyme steady-state, and under the quasi-steady-state assumption as applied to the complexation rate. The complete and approximate approaches are applied to observations of biological denitrification in soils. Our analysis highlights that the full GEBIK and GEBIF provide a more accurate description of concentrations and isotopic compositions of substrates and products throughout the reaction than do the approximate forms. We demonstrate that the isotopic effects of a biochemical reaction depend, in the most general case, on substrate and complex concentrations and, therefore, the fractionation factor is a function of time. We also demonstrate that inverse isotopic effects can occur for values of the fractionation factor smaller than 1, and that reactions that do not discriminate isotopes do not necessarily imply a fractionation factor equal to 1.

  3. Effects of deuteration on hematopoiesis in the mouse

    International Nuclear Information System (INIS)

    Adams, W.H.; Adams, D.G.

    1988-01-01

    Mice ingesting 30 to 50% D 2 O (heavy water, deuterium oxide) developed a dose-dependent depression of formed peripheral blood elements in 4 to 9 days. The principal mechanism of anemia and thrombocytopenia is impaired hematopoiesis. Despite pancytopenia in the peripheral blood, bone marrow cellularity and morphology remained normal. Upon replacement of D 2 O with tap water, platelet and neutrophil concentrations returned to normal within 48 to 72 hr. In contrast, blood lymphocyte concentrations remained low for several weeks. B-lymphocytes may be more affected by deuteration than other lymphocyte subsets. In vivo reticuloendothelial cell function, as assessed by 51 Cr-labeled sheep erythrocyte clearance, was unaffected by D 2 O. Although a dose-dependent decrease in fluid intake occurred during deuteration, hematocytopenia was not a consequence of dehydration. In view of the known kinetics of D 2 O in biological systems, the rapid response of myeloid elements to deuteration must be due primarily to the solvent (nonmetabolic) isotope effect. Prolonged deuteration has proven toxic when included in regimens for treatment of neoplasia, including leukemia, in animal models. The present study shows that modulation of hematopoiesis by D 2 O is possible without invoking the toxicities associated with prolonged deuteration

  4. Asymmetric synthesis of α-deuterated α-amino acids.

    Science.gov (United States)

    Takeda, Ryosuke; Abe, Hidenori; Shibata, Norio; Moriwaki, Hiroki; Izawa, Kunisuke; Soloshonok, Vadim A

    2017-08-23

    α-Deuterated-α-amino acids represent a very special class of stable isotopically labeled compounds, used in advanced biomedical research. Herein, we disclose a generalized approach for the preparation of α- 2 H-α-amino acids in enantiomerically pure form and with up to 99% deuteration. The reaction chemistry involved in this process is based on the dynamic kinetic resolution of racemates or (S)-(R) interconversion via the formation of intermediate Ni(ii) complexes derived from unprotected amino acids and recyclable tridentate ligands. Operationally convenient conditions, excellent chemical yields, diastereoselectivity and the degree of the deuteration bode well for the wide application of this methodology for the preparation of tailor-made α- 2 H-α-amino acids.

  5. Deuteration of piperylene on zeolite NaY

    International Nuclear Information System (INIS)

    Kharlamov, V.V.; Kadentsev, V.I.; Kharatishvili, N.G.; Minachev, Kh.M.

    1982-01-01

    In order to further refine the mechanism of hydrogenation reaction on zeolites, the deuteration of piperylene on NaY was studied. The kinetic isotope effect in the hydrogenation of piperylene on zeolite NaY indicates that hydrogen takes part in the limiting step of the process and the 1-pentene and 2-pentene formed in the deuteration of piperylene have a wide isotope distribution, with a maximum amount of the d 2 isotope, and an average number of deuterium atoms in the molecules equal to 2.25-2.36

  6. Study of Stationary Phase Metabolism Via Isotopomer Analysis of Amino Acids from an Isolated Protein

    Energy Technology Data Exchange (ETDEWEB)

    Shaikh, AfshanS.; Tang, YinjieJ.; Mukhopadhyay, Aindrila; Martin, Hector Garcia; Gin, Jennifer; Benke, Peter; Keasling, Jay D.

    2009-09-14

    Microbial production of many commercially important secondary metabolites occurs during stationary phase, and methods to measure metabolic flux during this growth phase would be valuable. Metabolic flux analysis is often based on isotopomer information from proteinogenic amino acids. As such, flux analysis primarily reflects the metabolism pertinent to the growth phase during which most proteins are synthesized. To investigate central metabolism and amino acids synthesis activity during stationary phase, addition of fully 13C-labeled glucose followed by induction of green fluorescent protein (GFP) expression during stationary phase was used. Our results indicate that Escherichia coli was able to produce new proteins (i.e., GFP) in the stationary phase, and the amino acids in GFP were mostly from degraded proteins synthesized during the exponential growth phase. Among amino acid biosynthetic pathways, only those for serine, alanine, glutamate/glutamine, and aspartate/asparagine had significant activity during the stationary phase.

  7. Detecting climate-change responses of plants and soil organic matter using isotopomers

    Science.gov (United States)

    Schleucher, Jürgen; Ehlers, Ina; Segura, Javier; Haei, Mahsa; Augusti, Angela; Köhler, Iris; Zuidema, Pieter; Nilsson, Mats; Öquist, Mats

    2015-04-01

    Responses of vegetation and soils to environmental changes will strongly influence future climate, and responses on century time scales are most important for feedbacks on the carbon cycle, climate models, prediction of crop productivity, and for adaptation to climate change. That plants respond to increasing CO2 on century time scales has been proven by changes in stomatal index, but very little is known beyond this. In soil, the complexity of soil organic matter (SOM) has hampered a sufficient understanding of the temperature sensitivity of SOM turnover. Here we present new stable isotope methodology that allows detecting shifts in metabolism on long time scales, and elucidating SOM turnover on the molecular level. Compound-specific isotope analysis measures isotope ratios of defined metabolites, but as average of the entire molecule. Here we demonstrate how much more detailed information can be obtained from analyses of intramolecular distributions of stable isotopes, so-called isotopomer abundances. As key tool, we use nuclear magnetic resonance (NMR) spectroscopy, which allows detecting isotope abundance with intramolecular resolution and without risk for isotope fractionation during analysis. Enzyme isotope fractionations create non-random isotopomer patterns in biochemical metabolites. At natural isotope abundance, these patterns continuously store metabolic information. We present a strategy how these patterns can be used as to extract signals on plant physiology, climate variables, and their interactions. Applied in retrospective analyses to herbarium samples and tree-ring series, we detect century-time-scale metabolic changes in response to increasing atmospheric CO2, with no evidence for acclimatory reactions by the plants. In trees, the increase in photosynthesis expected from increasing CO2 ("CO2 fertilization) was diminished by increasing temperatures, which resolves the discrepancy between expected increases in photosynthesis and commonly observed

  8. Deuterated Formaldehyde in the low mass protostar HH212

    Science.gov (United States)

    Sahu, Dipen; Minh, YC; Lee, Chin-Fei; Liu, Sheng-Yuan; Das, Ankan; Chakrabarti, SK; Sivaraman, Bhala

    2018-01-01

    HH212, a nearby (400 pc) object in Orion, is a Class 0 protostellar system with a Keplerian disk and collimated bipolar SiO jets. Deuterated water, HDO and a deuterated complex molecule, methanol (CH2DOH) have been reported in the source. Here, we report the HDCO (deuterated formaldehyde) line observation from ALMA data to probe the inner region of HH212. We compare HDCO line with other molecular lines to understand the possible chemistry and physics of the source. The distribution of HDCO emission suggests it may be associated with the base of the outflow. The emission also shows a rotation but it is not associated with the Keplerian rotation of disk or the rotating infalling envelope, rather it is associated with the outflow as previously seen in C34S. From the possible deuterium fractionation, we speculate that the gas phase formation of deuterated formaldehyde is active in the central hot region of the low-mass protostar system, HH212.

  9. Deuteration enhances catalyst lifetime in palladium-catalysed alcohol oxidation

    NARCIS (Netherlands)

    Armenise, Nicola; Tahiri, Nabil; Eisink, Niek N H M; Denis, Mathieu; Jäger, Manuel; De Vries, Johannes G; Witte, Martin D; Minnaard, Adriaan J

    2016-01-01

    The catalyst palladium/2,9-CD3-phenanthroline has a 1.8 times higher turnover number than its non-deuterated counterpart in the aerobic alcohol oxidation of methyl glucoside and allows the regioselective oxidation with dioxygen as the terminal oxidant.

  10. Deuterated fibre Z-pinch on the S-300 generator

    NARCIS (Netherlands)

    Klir, D.; Kravarik, J.; Kubes, P.; Bakshaev, Yu L.; Blinov, P. I.; Chernenko, A. S.; Danko, S. A.; Korolev, V. D.; Ustroev, G. I.; Ivanov, M. I.; Cai, Hongchun

    2006-01-01

    Dense Z-pinch experiments were carried out on the S-300 generator (3.5 MA, 100 ns, 0.15 Omega) at the Kurchatov Institute in Moscow. The experiments were performed at a peak current of 2 MA with a rise time of about 100 ns. The Z-pinch was formed from a deuterated polyethylene fibre of 100 mu m

  11. X-ray structure determination and deuteration of nattokinase

    Energy Technology Data Exchange (ETDEWEB)

    Yanagisawa, Yasuhide [Chiba Institute of Science, 15-8 Shiomi-cho, Cho-shi, Chiba 288-025 (Japan); Chatake, Toshiyuki, E-mail: chatake@rri.kyoto-u.ac.jp [Kyoto University, Asashironishi 2, Kumatori, Osaka 590-0494 (Japan); Naito, Sawa; Ohsugi, Tadanori; Yatagai, Chieko; Sumi, Hiroyuki [Kurashiki University of Science and the Arts, 2640 Nishinoura, Tsurajima-cho, Kurashiki, Okayama 712-8505 (Japan); Kawaguchi, Akio [Kyoto University, Asashironishi 2, Kumatori, Osaka 590-0494 (Japan); Chiba-Kamosida, Kaori [Nippon Advanced Technology Co. Ltd, J-PARC, 2-4 Shirane Shirakata, Tokai, Ibaraki 319-1195 (Japan); Ogawa, Megumi; Adachi, Tatsumi [Chiba Institute of Science, 15-8 Shiomi-cho, Cho-shi, Chiba 288-025 (Japan); Morimoto, Yukio [Kyoto University, Asashironishi 2, Kumatori, Osaka 590-0494 (Japan)

    2013-11-01

    X-ray structure determination and deuteration of nattokinase were performed to facilitate neutron crystallographic analysis. Nattokinase (NK) is a strong fibrinolytic enzyme, which is produced in abundance by Bacillus subtilis natto. Although NK is a member of the subtilisin family, it displays different substrate specificity when compared with other subtilisins. The results of molecular simulations predict that hydrogen arrangements around Ser221 at the active site probably account for the substrate specificity of NK. Therefore, neutron crystallographic analysis should provide valuable information that reveals the enzymatic mechanism of NK. In this report, the X-ray structure of the non-hydrogen form of undeuterated NK was determined, and the preparation of deuterated NK was successfully achieved. The non-hydrogen NK structure was determined at 1.74 Å resolution. The three-dimensional structures of NK and subtilisin E from Bacillus subtilis DB104 are near identical. Deuteration of NK was carried out by cultivating Bacillus subtilis natto in deuterated medium. The D{sub 2}O resistant strain of Bacillus subtilis natto was obtained by successive cultivation rounds, in which the concentration of D{sub 2}O in the medium was gradually increased. NK was purified from the culture medium and its activity was confirmed by the fibrin plate method. The results lay the framework for neutron protein crystallography analysis.

  12. Synthesis of 3-deuterated diazepam and nordiazepam 4-oxides and their use in the synthesis of other 3-deuterated derivatives

    Energy Technology Data Exchange (ETDEWEB)

    Yang, S.K.; Tang, R.; Quanlong Pu [Uniformed Services Univ. of the Health Sciences, Bethesda, MD (United States). Dept. of Medicine

    1996-08-01

    The protons at 3-positions of diazepam 4-oxide and nordiazepam 4-oxide underwent an efficient deuterium exchange via keto-enol tautomerism in deuterated alkaline methanol. The 3-dideuterated 4-oxides were each used as a starting material to synthesize 3-monodeuterated oxazepam and its 3-acetate, 3-monodeuterated temazepam and its 3-acetate, and 3-dideuterated diazepam and nordiazepam. (author).

  13. Characterization and production and consumption processes of N2O emitted from temperate agricultural soils determined via isotopomer ratio analysis

    Science.gov (United States)

    Toyoda, Sakae; Yano, Midori; Nishimura, Sei-Ichi; Akiyama, Hiroko; Hayakawa, Atsushi; Koba, Keisuke; Sudo, Shigeto; Yagi, Kazuyuki; Makabe, Akiko; Tobari, Yoshifumi; Ogawa, Nanako O.; Ohkouchi, Naohiko; Yamada, Keita; Yoshida, Naohiro

    2011-06-01

    Isotopomer ratios of N2O (bulk nitrogen and oxygen isotope ratios, δ15Nbulk and δ18O, and intramolecular 15N site preference, SP) are useful parameters that characterize sources of this greenhouse gas and also provide insight into production and consumption mechanisms. We measured isotopomer ratios of N2O emitted from typical Japanese agricultural soils (Fluvisols and Andisols) planted with rice, wheat, soybean, and vegetables, and treated with synthetic (urea or ammonium) and organic (poultry manure) fertilizers. The results were analyzed using a previously reported isotopomeric N2O signature produced by nitrifying/denitrifying bacteria and a characteristic relationship between δ15Nbulk and SP during N2O reduction by denitrifying bacteria. Relative contributions from nitrification (hydroxylamine oxidation) and denitrification (nitrite reduction) to gross N2O production deduced from the analysis depended on soil type and fertilizer. The contribution from nitrification was relatively high (40%-70%) in Andisols amended with synthetic ammonium fertilizer, while denitrification was dominant (50%-90%) in the same soils amended with poultry manure during the period when N2O production occurred in the surface layer. This information on production processes is in accordance with that obtained from flux/concentration analysis of N2O and soil inorganic nitrogen. However, isotopomer analysis further revealed that partial reduction of N2O was pronounced in high-bulk density, alluvial soil (Fluvisol) compared to low-bulk density, volcanic ash soil (Andisol), and that the observed difference in N2O flux between normal and pelleted manure could have resulted from a similar mechanism with different rates of gross production and gross consumption. The isotopomeric analysis is based on data from pure culture bacteria and would be improved by further studies on in situ biological processes in soils including those by fungi. When flux/concentration-weighted average isotopomer

  14. Catalytic Stereoinversion of L-Alanine to Deuterated D-Alanine.

    Science.gov (United States)

    Moozeh, Kimia; So, Soon Mog; Chin, Jik

    2015-08-03

    A combination of an achiral pyridoxal analogue and a chiral base has been developed for catalytic deuteration of L-alanine with inversion of stereochemistry to give deuterated D-alanine under mild conditions (neutral pD and 25 °C) without the use of any protecting groups. This system can also be used for catalytic deuteration of D-alanine with retention of stereochemistry to give deuterated D-alanine. Thus a racemic mixture of alanine can be catalytically deuterated to give an enantiomeric excess of deuterated D-alanine. While catalytic deracemization of alanine is forbidden by the second law of thermodynamics, this system can be used for catalytic deracemization of alanine with deuteration. Such green and biomimetic approach to catalytic stereocontrol provides insights into efficient amino acid transformations. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. Multilayer Formation and Evaporation of Deuterated Ices in Prestellar and Protostellar Cores

    Science.gov (United States)

    Taquet, Vianney; Charnley, Steven B.; Sipilä, Olli

    2014-08-01

    Extremely large deuteration of several molecules has been observed toward prestellar cores and low-mass protostars for a decade. New observations performed toward low-mass protostars suggest that water presents a lower deuteration in the warm inner gas than in the cold external envelope. We coupled a gas-grain astrochemical model with a one-dimensional model of a collapsing core to properly follow the formation and the deuteration of interstellar ices as well as their subsequent evaporation in the low-mass protostellar envelopes with the aim of interpreting the spatial and temporal evolutions of their deuteration. The astrochemical model follows the formation and the evaporation of ices with a multilayer approach and also includes a state-of-the-art deuterated chemical network by taking the spin states of H2 and light ions into account. Because of their slow formation, interstellar ices are chemically heterogeneous and show an increase of their deuterium fractionation toward the surface. The differentiation of the deuteration in ices induces an evolution of the deuteration within protostellar envelopes. The warm inner region is poorly deuterated because it includes the whole molecular content of ices, while the deuteration predicted in the cold external envelope scales with the highly deuterated surface of ices. We are able to reproduce the observed evolution of water deuteration within protostellar envelopes, but we are still unable to predict the super-high deuteration observed for formaldehyde and methanol. Finally, the extension of this study to the deuteration of complex organics, important for the prebiotic chemistry, shows good agreement with the observations, suggesting that we can use the deuteration to retrace their mechanisms and their moments of formation.

  16. Multilayer formation and evaporation of deuterated ices in prestellar and protostellar cores

    International Nuclear Information System (INIS)

    Taquet, Vianney; Charnley, Steven B.; Sipilä, Olli

    2014-01-01

    Extremely large deuteration of several molecules has been observed toward prestellar cores and low-mass protostars for a decade. New observations performed toward low-mass protostars suggest that water presents a lower deuteration in the warm inner gas than in the cold external envelope. We coupled a gas-grain astrochemical model with a one-dimensional model of a collapsing core to properly follow the formation and the deuteration of interstellar ices as well as their subsequent evaporation in the low-mass protostellar envelopes with the aim of interpreting the spatial and temporal evolutions of their deuteration. The astrochemical model follows the formation and the evaporation of ices with a multilayer approach and also includes a state-of-the-art deuterated chemical network by taking the spin states of H 2 and light ions into account. Because of their slow formation, interstellar ices are chemically heterogeneous and show an increase of their deuterium fractionation toward the surface. The differentiation of the deuteration in ices induces an evolution of the deuteration within protostellar envelopes. The warm inner region is poorly deuterated because it includes the whole molecular content of ices, while the deuteration predicted in the cold external envelope scales with the highly deuterated surface of ices. We are able to reproduce the observed evolution of water deuteration within protostellar envelopes, but we are still unable to predict the super-high deuteration observed for formaldehyde and methanol. Finally, the extension of this study to the deuteration of complex organics, important for the prebiotic chemistry, shows good agreement with the observations, suggesting that we can use the deuteration to retrace their mechanisms and their moments of formation.

  17. Investigation of four carbon monoxide isotopomers in natural abundance by laser-induced fluorescence in a supersonic jet

    CSIR Research Space (South Africa)

    Du Plessis, A

    2007-01-01

    Full Text Available sigma+(1, 0), d3delta - X1sigma+(5, 0), a beta sigma+ - X1sigma+(14, 0)) of 12C16O and band origins of six rovibronic bands (A1pi(v0 = 0–5) - X1sigma+(nuN = 0)) of the rare isotopomer 12C17O, and on the experimental conditions facilitating the high...

  18. Observations of strongly deuterated molecules: Implications for interstellar chemistry

    International Nuclear Information System (INIS)

    Turner, B.E.; Zuckerman, B.

    1978-01-01

    We surveyed the J=1→0 transitons of DCO + , N 2 D + , and DNC in 13 interstellar clouds. In the dark dust clouds L63 and L134N, the apparent ratio DCO + /HCO + exceeds unity. While the apparent ratio DNC/HNC is of order unity in these clouds, N 2 D+/N 2 H + is significantly smaller. In other sources outside of the galactic center, DCO + /HCO + and DNC/HNC are typically a few times 10 -2 and somewhat larger than DCN/HCN. None of these deuterated species is detected in the galactic center region. These results are analyzed in terms of current ion-molecule reaction schemes. Possible differences between DCO + /HCO + and N 2 D + /N 2 H + are considered and used to place restrictions on physical conditions and abundances in deuterated sources. Predictions are made for NH 2 D/NH 3 and HDO/H 2 O and compared with recent observations. Ion-molecule chemistry, as at present understood, appears consistent with existing observationsof deuterated interstellar molecules

  19. Smooth deuterated cellulose films for the visualisation of adsorbed bio-macromolecules.

    Science.gov (United States)

    Su, Jielong; Raghuwanshi, Vikram S; Raverty, Warwick; Garvey, Christopher J; Holden, Peter J; Gillon, Marie; Holt, Stephen A; Tabor, Rico; Batchelor, Warren; Garnier, Gil

    2016-10-31

    Novel thin and smooth deuterated cellulose films were synthesised to visualize adsorbed bio-macromolecules using contrast variation neutron reflectivity (NR) measurements. Incorporation of varying degrees of deuteration into cellulose was achieved by growing Gluconacetobacter xylinus in deuterated glycerol as carbon source dissolved in growth media containing D 2 O. The derivative of deuterated cellulose was prepared by trimethylsilylation(TMS) in ionic liquid(1-butyl-3-methylimidazolium chloride). The TMS derivative was dissolved in toluene for thin film preparation by spin-coating. The resulting film was regenerated into deuterated cellulose by exposure to acidic vapour. A common enzyme, horseradish peroxidase (HRP), was adsorbed from solution onto the deuterated cellulose films and visualized by NR. The scattering length density contrast of the deuterated cellulose enabled accurate visualization and quantification of the adsorbed HRP, which would have been impossible to achieve with non-deuterated cellulose. The procedure described enables preparing deuterated cellulose films that allows differentiation of cellulose and non-deuterated bio-macromolecules using NR.

  20. A simplified calculation procedure for mass isotopomer distribution analysis (MIDA) based on multiple linear regression.

    Science.gov (United States)

    Fernández-Fernández, Mario; Rodríguez-González, Pablo; García Alonso, J Ignacio

    2016-10-01

    We have developed a novel, rapid and easy calculation procedure for Mass Isotopomer Distribution Analysis based on multiple linear regression which allows the simultaneous calculation of the precursor pool enrichment and the fraction of newly synthesized labelled proteins (fractional synthesis) using linear algebra. To test this approach, we used the peptide RGGGLK as a model tryptic peptide containing three subunits of glycine. We selected glycine labelled in two 13 C atoms ( 13 C 2 -glycine) as labelled amino acid to demonstrate that spectral overlap is not a problem in the proposed methodology. The developed methodology was tested first in vitro by changing the precursor pool enrichment from 10 to 40% of 13 C 2 -glycine. Secondly, a simulated in vivo synthesis of proteins was designed by combining the natural abundance RGGGLK peptide and 10 or 20% 13 C 2 -glycine at 1 : 1, 1 : 3 and 3 : 1 ratios. Precursor pool enrichments and fractional synthesis values were calculated with satisfactory precision and accuracy using a simple spreadsheet. This novel approach can provide a relatively rapid and easy means to measure protein turnover based on stable isotope tracers. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  1. Metabolic Effects of Hypoxia in Colorectal Cancer by 13C NMR Isotopomer Analysis

    Directory of Open Access Journals (Sweden)

    Ana M. Abrantes

    2014-01-01

    Full Text Available 13C NMR isotopomer analysis was used to characterize intermediary metabolism in three colorectal cancer cell lines (WiDr, LS1034, and C2BBe1 and determine the “metabolic remodeling” that occurs under hypoxia. Under normoxia, the three colorectal cancer cell lines present high rates of lactate production and can be seen as “Warburg” like cancer cells independently of substrate availability, since such profile was dominant at both high and low glucose media contents. The LS1034 was the less glycolytic of the three cell lines and was the most affected by the event of hypoxia, raising abruptly glucose consumption and lactate production. The other two colorectal cell lines, WiDr and C2BBe1, adapted better to hypoxia and were able to maintain their oxidative fluxes even at the very low levels of oxygen. These differential metabolic behaviors of the three colorectal cell lines show how important an adequate knowledge of the “metabolic remodeling” that follows a given cancer treatment is towards the correct (redesign of therapeutic strategies against cancer.

  2. Isotopomer analysis of lipid biosynthesis by high resolution mass spectrometry and NMR

    Energy Technology Data Exchange (ETDEWEB)

    Lane, Andrew N., E-mail: anlane01@louisville.edu [JG Brown Cancer Center, 529 S. Jackson Street, Louisville, KY 40202 (United States); Center for Regulatory and Environmental Analytical Metabolomics (CREAM), University of Louisville, Louisville, KY (United States); Fan, Teresa W.-M. [JG Brown Cancer Center, 529 S. Jackson Street, Louisville, KY 40202 (United States); Center for Regulatory and Environmental Analytical Metabolomics (CREAM), University of Louisville, Louisville, KY (United States); Department of Chemistry, University of Louisville, Louisville, KY 40292 (United States); Xie, Zhengzhi; Moseley, Hunter N.B.; Higashi, Richard M. [Center for Regulatory and Environmental Analytical Metabolomics (CREAM), University of Louisville, Louisville, KY (United States); Department of Chemistry, University of Louisville, Louisville, KY 40292 (United States)

    2009-10-05

    We have coupled 2D-NMR and infusion FT-ICR-MS with computer-assisted assignment to profile {sup 13}C-isotopologues of glycerophospholipids (GPL) directly in crude cell extracts, resulting in very high information throughput of >3000 isobaric molecules in a few minutes. A mass accuracy of better than 1 ppm combined with a resolution of 100,000 at the measured m/z was required to distinguish isotopomers from other GPL structures. Isotopologue analysis of GPLs extracted from LCC2 breast cancer cells grown on [U-{sup 13}C]-glucose provided a rich trove of information about the biosynthesis and turnover of the GPLs. The isotopologue intensity ratios from the FT-ICR-MS were accurate to {approx}1% or better based on natural abundance background, and depended on the signal-to-nose ratio. The time course of incorporation of {sup 13}C from [U-{sup 13}C]-glucose into a particular phosphatidylcholine was analyzed in detail, to provide a quantitative measure of the sizes of glycerol, acetyl CoA and total GPL pools in growing LCC2 cells. Independent and complementary analysis of the positional {sup 13}C enrichment in the glycerol and fatty acyl chains obtained from high resolution 2D NMR was used to verify key aspects of the model. This technology enables simple and rapid sample preparation, has rapid analysis, and is generally applicable to unfractionated GPLs of almost any head group, and to mixtures of other classes of metabolites.

  3. Isotopomer analysis of lipid biosynthesis by high resolution mass spectrometry and NMR

    International Nuclear Information System (INIS)

    Lane, Andrew N.; Fan, Teresa W.-M.; Xie, Zhengzhi; Moseley, Hunter N.B.; Higashi, Richard M.

    2009-01-01

    We have coupled 2D-NMR and infusion FT-ICR-MS with computer-assisted assignment to profile 13 C-isotopologues of glycerophospholipids (GPL) directly in crude cell extracts, resulting in very high information throughput of >3000 isobaric molecules in a few minutes. A mass accuracy of better than 1 ppm combined with a resolution of 100,000 at the measured m/z was required to distinguish isotopomers from other GPL structures. Isotopologue analysis of GPLs extracted from LCC2 breast cancer cells grown on [U- 13 C]-glucose provided a rich trove of information about the biosynthesis and turnover of the GPLs. The isotopologue intensity ratios from the FT-ICR-MS were accurate to ∼1% or better based on natural abundance background, and depended on the signal-to-nose ratio. The time course of incorporation of 13 C from [U- 13 C]-glucose into a particular phosphatidylcholine was analyzed in detail, to provide a quantitative measure of the sizes of glycerol, acetyl CoA and total GPL pools in growing LCC2 cells. Independent and complementary analysis of the positional 13 C enrichment in the glycerol and fatty acyl chains obtained from high resolution 2D NMR was used to verify key aspects of the model. This technology enables simple and rapid sample preparation, has rapid analysis, and is generally applicable to unfractionated GPLs of almost any head group, and to mixtures of other classes of metabolites.

  4. Infrared and Raman Spectra of and Isotopomers: A DFT-PT2 Anharmonic Study

    Directory of Open Access Journals (Sweden)

    Andrea Alparone

    2013-01-01

    Full Text Available IR and Raman spectra of selenophene and of its perdeuterated isotopomer have been obtained in gas phase through density-functional theory (DFT computations. Vibrational wavenumbers have been calculated using harmonic and anharmonic second-order perturbation theory (PT2 procedures with the B3LYP method and the 6-311 basis set. Anharmonic overtones have been determined by means of the PT2 method. The introduction of anharmonic terms decreases the harmonic wavenumbers, giving a significantly better agreement with the experimental data. The most significant anharmonic effects occur for the C–H and C–D stretching modes, the observed H/D isotopic wavenumber redshifts being satisfactorily reproduced by the PT2 computations within 6–20 cm−1 (1–3%. In the spectral region between 500 cm−1 and 1500 cm−1, the IR spectra are dominated by the out-of-plane C–H (C–D bending transition, whereas the Raman spectra are mainly characterized by a strong peak mainly attributed to the C=C + C–C bonds stretching vibration with the contribution of the in-plane C–H (C–D bending deformation. The current results confirm that the PT2 approach combined with the B3LYP/6-311 level of calculation is a satisfactory choice for predicting vibrational spectra of cyclic molecules.

  5. Path integral studies of the rotations of methane and its heavier isotopomers in 4He nanoclusters.

    Science.gov (United States)

    Markovskiy, N D; Mak, C H

    2009-08-13

    Path integral Monte Carlo simulations have been carried out to study the rotations of a methane molecule and its heavier isotopomers inside a small cluster of 4He atoms at 0.3 K in order to determine how the renormalization in the methane's rotational constant is related to the quantum statistics and superfluidity of the helium shell. By changing the mass of the hydrogens and systematically varying the moment of inertia of the methane, we were able to study the effects of its rotations on the quantum statistics of the helium atoms and their countereffects on the methane's effective rotational constant. The renormalized rotational constant depends strongly on the intrinsic moment of inertia of the methane. A heavy probe favors strong templating of the helium density as well as a large renormalization in the probe's rotational constant, but a light probe shows almost no effect on the shell density or the effective rotational constant. These results suggest that in order to fully understand the superfluidity of the helium shell, the probe must be treated as an integral part of the system. We rationalize the findings in terms of a rotational smearing effect and suggest that there is no clearly quantifiable relationship between the superfluid fraction of the shell and the renormalized rotational constant of the probe for cases where the probe molecule is either light or has weak anisotropic interactions with the helium atoms.

  6. Synthesis of specifically deuterated S-benzylcysteines and of oxytocin and related diastereomers deuterated in the half-cystine positions

    Energy Technology Data Exchange (ETDEWEB)

    Upson, D.A.; Hruby, V.J.

    1976-04-16

    S-Benzylcysteine derivatives specifically deuterated at the ..cap alpha.. carbon only, the ..beta.. carbon only, and at both the ..cap alpha.. and ..beta.. carbons have been synthesized. These labeled compounds have been enzymatically resolved and the enantiomers and reacemates have been converted to the N-tert-butyloxycarbonyl derivatives. The deuterium labels were not exchanged under the conditions of the syntheses. Condensation of the sodium salt of diethyl ..cap alpha..-acetami-domalonate with benzyl chloromethyl sulfide followed by hydrolysis with DCl afforded S-benzyl-DL-(..cap alpha..-/sup 2/H/sub 1/) cysteine. Acetylation followed by treatment with hog renal acylase separated the stereoisomers. A Mannich reaction with (/sup 2/H/sub 2/) methylene diacetate, diethyl ..cap alpha..-acetamido-..cap alpha..-dimethylamino(/sup 2/H/sub 2/)methylmalonate methiodide (15). Treatment of 15 with sodium benzylmercaptide gave diethyl ..cap alpha..-acetamido-..cap alpha..-benzylthio(/sup 2/H/sub 2/)methylmalonate, which was hydrolyzed with HCl to yield S-benzyl-DL-(..beta..,..beta..-/sup 2/H/sub 2/)cysteine or with DCl to afford S-benzyl-DL-(..cap alpha..,..beta..,..beta..,-/sup 2/H/sub 3/)cysteine. These compounds were resolved as before. The preparation of S-benzyl-DL-(..cap alpha..,..beta..,..beta..-/sup 2/H/sub 3/)cysteine required an efficient source of ethanol-d. This deuterated solvent was prepared in quantitative yield in 2 h from tetraethoxysilane, D/sub 2/O, and a catalytic amount of thionyl chloride. The protected deuterated amino acids were used in the preparation of several oxytocin analogues in which the specific deuteration appears in either the 1-hemicystine or the 6-hemicystine residues.

  7. Elucidating turnover pathways of bioactive small molecules by isotopomer analysis: the persistent organic pollutant DDT.

    Directory of Open Access Journals (Sweden)

    Ina Ehlers

    Full Text Available The persistent organic pollutant DDT (1,1,1-trichloro-2,2-bis(4-chlorophenylethane is still indispensable in the fight against malaria, although DDT and related compounds pose toxicological hazards. Technical DDT contains the dichloro congener DDD (1-chloro-4-[2,2-dichloro-1-(4-chlorophenylethyl]benzene as by-product, but DDD is also formed by reductive degradation of DDT in the environment. To differentiate between DDD formation pathways, we applied deuterium NMR spectroscopy to measure intramolecular deuterium distributions (2H isotopomer abundances of DDT and DDD. DDD formed in the technical DDT synthesis was strongly deuterium-enriched at one intramolecular position, which we traced back to 2H/1H fractionation of a chlorination step in the technical synthesis. In contrast, DDD formed by reductive degradation was strongly depleted at the same position, which was due to the incorporation of 2H-depleted hydride equivalents during reductive degradation. Thus, intramolecular isotope distributions give mechanistic information on reaction pathways, and explain a puzzling difference in the whole-molecule 2H/1H ratio between DDT and DDD. In general, our results highlight that intramolecular isotope distributions are essential to interpret whole-molecule isotope ratios. Intramolecular isotope information allows distinguishing pathways of DDD formation, which is important to identify polluters or to assess DDT turnover in the environment. Because intramolecular isotope data directly reflect isotope fractionation of individual chemical reactions, they are broadly applicable to elucidate transformation pathways of small bioactive molecules in chemistry, physiology and environmental science.

  8. Deuterated glycoaldehyde: laboratory measurements, analysis and proposed astrophysical research

    Science.gov (United States)

    Walters, A.; Bouchez, A.; Margules, L.; Motiyenko, R.; Guillemin, J. C.; Bottinelli, S.; Ceccarelli, C.; Kahane, C.

    2011-05-01

    We have measured in the laboratory the spectra of all the monosubstituted isotopologues of glycoaldehyde (CH_2OD-CHO, CHDOH-CHO, CH_2OH-CDO) and one doubly substituted one (CHDOH-CDO). The spectra were measured, between 150 and 630 GHz, with the new Lille submillimetre-wave spectrometer based on harmonic generation of solid-state sources. The samples were provided by Rennes. Apart from the first listed isotopologue all species were observed simultaneously in the presence of an intense spectral impurity (pyridine), which complicated assignment. This work is part of the FORCOMS project, funded by the French National Research Agency (ANR) that concerns the Formation of Complex Organic Molecules (COMs) in Space. The goal of the project is to better understand the formation of these COMs during the earliest phases of star formation. Glycoaldehyde, a sugar-related interstellar prebiotic molecule has been detected in two star-forming regions, Sgr B2(N) (1,2) and G31.41+0.31(3). A significant overabundance of deuterated species has been observed in protostellar environments. Formation of glycoaldehyde is suspected to involve photodissociation driven ice chemistry. One of the objectives of FORCOMS is to test if a comparison of the abundance of deuterated and non-deuterated COMs can be used to trace complex organic chemistry in interstellar environments. Previous laboratory work on the D-isotopologues was restricted to less than 26 GHz (4). We hence carried out new measurements and analysis to obtain a complete set of predictions for radioastronomy. The previous measurements greatly helped in assigning the spectra. Simulations with CASSIS software have been made to select the best candidates for detection and a telescope proposal is under way.

  9. Regioselective synthesis of deuterated analogs of the neurotoxin MPTP

    International Nuclear Information System (INIS)

    Mabic, Stephane; Castagnoli, N. Jr.

    1996-01-01

    1-Methyl-4-phenyl-2-pyridone has been used as starting material for the efficient and regioselective synthesis of deuterated analogues of the neurotoxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). MPTP-2,2-d 2 MPTP-6,6-d 2 and MPTP-2,2,6,6-d 4 were obtained in good yield through a combination of alkaline deuterium exchange and selective LiAlH 4 and LiAlD 4 reduction reactions. (author)

  10. Synthesis of Deuterated 1,2,3-Triazoles

    Science.gov (United States)

    Akula, Hari K.; Lakshman, Mahesh K.

    2012-01-01

    The copper-catalyzed azide–alkyne cycloaddition (CuAAC) is a highly effective method for the selective incorporation of deuterium atom into the C-5 position of the 1,2,3-triazole structure. Reactions of alkynes and azides can be conveniently carried out in a biphasic medium of CH2Cl2/D2O, using the CuSO4/Na ascorbate system. The mildness of the method renders it applicable to substrates of relatively high complexity, such as nucleosides. Good yields and high levels of deuterium incorporation were observed. A reaction conducted in equimolar H2O and D2O showed 2.7 times greater incorporation of hydrogen atom as compared to deuterium. This is consistent with the H+ and D+ ion concentrations in H2O and D2O, respectively. With appropriately deuterated precursors, partially to fully deuterated triazoles were assembled where the final deuterium atom was incorporated in the triazole-forming step. PMID:23016757

  11. Deuteration around the ultracompact HII region Monoceros R2

    Science.gov (United States)

    Treviño-Morales, S. P.; Pilleri, P.; Fuente, A.; Kramer, C.; Roueff, E.; González-García, M.; Cernicharo, J.; Gerin, M.; Goicoechea, J. R.; Pety, J.; Berné, O.; Ossenkopf, V.; Ginard, D.; García-Burillo, S.; Rizzo, J. R.; Viti, S.

    2014-09-01

    Context. The massive star-forming region Monoceros R2 (Mon R2) hosts the closest ultra-compact Hii region, where the photon-dominated region (PDR) between the ionized and molecular gas can be spatially resolved with current single-dish telescopes. Aims: We aim at studying the chemistry of deuterated molecules toward Mon R2 to determine the deuterium fractions around a high-UV irradiated PDR and investigate the chemistry of these species. Methods: We used the IRAM-30 m telescope to carry out an unbiased spectral survey toward two important positions (namely IF and MP2) in Mon R2 at 1, 2, and 3 mm. This spectral survey is the observational basis of our study of the deuteration in this massive star-forming region. Our high spectral resolution observations (~0.25-0.65 km s-1) allowed us to resolve the line profiles of the different species detected. Results: We found a rich chemistry of deuterated species at both positions of Mon R2, with detections of C2D, DCN, DNC, DCO+, D2CO, HDCO, NH2D, and N2D+ and their corresponding hydrogenated species and rarer isotopologs. The high spectral resolution of our observations allowed us to resolve three velocity components: the component at 10 km s-1 is detected at both positions and seems associated with the layer most exposed to the UV radiation from IRS 1; the component at 12 km s-1 is found toward the IF position and seems related to the foreground molecular gas; finally, a component at 8.5 km s-1 is only detected toward the MP2 position, most likely related to a low-UV irradiated PDR. We derived the column density of the deuterated species (together with their hydrogenated counterparts), and determined the deuterium fractions as Dfrac = [XD]/[XH]. The values of Dfrac are around 0.01 for all the observed species, except for HCO+ and N2H+, which have values 10 times lower. The values found in Mon R2 are similar to those measured in the Orion Bar, and are well explained with a pseudo-time-dependent gas-phase model in which

  12. Specific acid catalyzed deuteration of the acetyl groups of 2,4-diacetyldeuterohemin-OMe

    International Nuclear Information System (INIS)

    Oster, O.; Neireiter, G.W.; Gurd, F.R.N.

    1975-01-01

    The methyl group of the acetyl groups in 2,4-diacetyldeuterohemin-OMe has been selectively deuterated. After removal of the iron, D 6 -2,4-diacetyl-deuteroporphyrin-OMe can be reduced to the corresponding hematoporphyrin and subsequent dehydration gives deuterated vinylic groups for protoporphyrin IX-OMe. (orig.) [de

  13. DEUTERIUM FRACTIONATION DURING AMINO ACID FORMATION BY PHOTOLYSIS OF INTERSTELLAR ICE ANALOGS CONTAINING DEUTERATED METHANOL

    Energy Technology Data Exchange (ETDEWEB)

    Oba, Yasuhiro; Watanabe, Naoki; Kouchi, Akira [Institute of Low Temperature Science, Hokkaido University, N19W8, Kita-ku, Sapporo, Hokkaido 060-0819 (Japan); Takano, Yoshinori, E-mail: oba@lowtem.hokudai.ac.jp [Department of Biogeochemistry, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa 237-0061 (Japan)

    2016-08-10

    Deuterium (D) atoms in interstellar deuterated methanol might be distributed into complex organic molecules through molecular evolution by photochemical reactions in interstellar grains. In this study, we use a state-of-the-art high-resolution mass spectrometer coupled with a high-performance liquid chromatography system to quantitatively analyze amino acids and their deuterated isotopologues formed by the photolysis of interstellar ice analogs containing singly deuterated methanol CH{sub 2}DOH at 10 K. Five amino acids (glycine, α -alanine, β -alanine, sarcosine, and serine) and their deuterated isotopologues whose D atoms are bound to carbon atoms are detected in organic residues formed by photolysis followed by warming up to room temperature. The abundances of singly deuterated amino acids are in the range of 0.3–1.1 relative to each nondeuterated counterpart, and the relative abundances of doubly and triply deuterated species decrease with an increasing number of D atoms in a molecule. The abundances of amino acids increase by a factor of more than five upon the hydrolysis of the organic residues, leading to decreases in the relative abundances of deuterated species for α -alanine and β -alanine. On the other hand, the relative abundances of the deuterated isotopologues of the other three amino acids did not decrease upon hydrolysis, indicating different formation mechanisms of these two groups upon hydrolysis. The present study facilitates both qualitative and quantitative evaluations of D fractionation during molecular evolution in the interstellar medium.

  14. DEUTERIUM FRACTIONATION DURING AMINO ACID FORMATION BY PHOTOLYSIS OF INTERSTELLAR ICE ANALOGS CONTAINING DEUTERATED METHANOL

    International Nuclear Information System (INIS)

    Oba, Yasuhiro; Watanabe, Naoki; Kouchi, Akira; Takano, Yoshinori

    2016-01-01

    Deuterium (D) atoms in interstellar deuterated methanol might be distributed into complex organic molecules through molecular evolution by photochemical reactions in interstellar grains. In this study, we use a state-of-the-art high-resolution mass spectrometer coupled with a high-performance liquid chromatography system to quantitatively analyze amino acids and their deuterated isotopologues formed by the photolysis of interstellar ice analogs containing singly deuterated methanol CH 2 DOH at 10 K. Five amino acids (glycine, α -alanine, β -alanine, sarcosine, and serine) and their deuterated isotopologues whose D atoms are bound to carbon atoms are detected in organic residues formed by photolysis followed by warming up to room temperature. The abundances of singly deuterated amino acids are in the range of 0.3–1.1 relative to each nondeuterated counterpart, and the relative abundances of doubly and triply deuterated species decrease with an increasing number of D atoms in a molecule. The abundances of amino acids increase by a factor of more than five upon the hydrolysis of the organic residues, leading to decreases in the relative abundances of deuterated species for α -alanine and β -alanine. On the other hand, the relative abundances of the deuterated isotopologues of the other three amino acids did not decrease upon hydrolysis, indicating different formation mechanisms of these two groups upon hydrolysis. The present study facilitates both qualitative and quantitative evaluations of D fractionation during molecular evolution in the interstellar medium.

  15. Synthesis of chromium (V) complex on the basis of deuterated ethanediol for a polarized deuteron target

    Energy Technology Data Exchange (ETDEWEB)

    Bunyatova, E.I.; Bubnov, N.N. (Joint Inst. for Nuclear Research, Moscow (USSR). Lab. of Nuclear Problems)

    1984-01-15

    To develop a target with polarised deuterons the chromium (V) complex with deuterated ethanediol ligands was synthesized. The electron paramagnetic resonance (EPR) spectra were employed to determine the concentration and g-factor of the complex. The procedure to obtain the chromium (V) complex with partly deuterated ethanediol ligands is also discussed.

  16. Synthesis of chromium (V) complex on the basis of deuterated ethanediol for a polarized deuteron target

    Science.gov (United States)

    Bunyatova, E. I.; Bubnov, N. N.

    1984-01-01

    To develop a target with polarised deuterons the chromium (V) complex with deuterated ethanediol ligands was synthesized. The electron paramagnetic resonance (EPR) spectra were employed to determine the concentration and g-factor of the complex. The procedure to obtain the chromium (V) complex with partly deuterated ethanediol ligands is also discussed.

  17. Deuterated nucleotides as chemical probes of RNA structure: a detailed protocol for the enzymatic synthesis of a complete set of nucleotides specifically deuterated at ribose carbons

    Directory of Open Access Journals (Sweden)

    Robert N. Azad

    2015-05-01

    Full Text Available We describe here a detailed protocol for the synthesis of ribonucleotides specifically deuterated at each ribose carbon atom. We synthesized 20 specifically deuterated ribonucleotides: ATP, CTP, GTP, and UTP, each of which contained one of five deuterated riboses (either 1′-D, 2″-D, 3′-D, 4′-D, or 5′,5″-D2. Our synthetic approach is inspired by the pioneering work of Tolbert and Williamson, who developed a method for the convenient one-pot enzymatic synthesis of nucleotides (Tolbert, T. J. and Williamson, J. R. (1996 J. Am. Chem. Soc. 118, 7929–7940. Our protocol consists of a comprehensive list of required chemical and enzymatic reagents and equipment, detailed procedures for enzymatic assays and nucleotide synthesis, and chromatographic procedures for purification of deuterated nucleotides. As an example of the utility of specifically deuterated nucleotides, we used them to synthesize specifically deuterated sarcin/ricin loop (SRL RNA and measured the deuterium kinetic isotope effect on hydroxyl radical cleavage of the SRL.

  18. NMR analyses of deuterated phospholipids isolated from Pichia angusta

    Science.gov (United States)

    Massou, S.; Augé, S.; Tropis, M.; Lindley, N. D.; Milon, A.

    1998-02-01

    The phospholipid composition of methylotrophic yeasts grown on deuterated and hydrogenated media has been determined by proton and phosphorus NMR. By using a line narrowing solvent, we could obtain linewidth lower than 2 Hz, and all the resonances could be resolved. Phospholipids were identified on the basis of their chemical shift and by 31P - H correlations (HMQC - HOHAHA gradient enhanced experiments). We have thus analysed qualitatively and quantitatively lipids mixtures directly after chloroform-methanol extraction. The lipid composition is deeply modified after growth in deuterated medium were phosphatidyl Inositol (PI) becomes the major lipid, instead of a PC, PS, PI mixture in hydrogenated conditions. La composition en phospholipides de levures méthylotrophes ayant poussé sur des milieux de cultures hydrogénés et deutériés a été déterminée par RMN du proton et du phosphore31. L'utilisation d'un solvant d'affinement a permis d'obtenir des largeurs de raies inférieures à 2Hz et de résoudre toutes les classes de phospholipides. Ils sont ensuite identifiés par leur déplacement chimique et par des corrélations phosphore - proton spécifiques (expériences HMQC-HOHAHA gradients). Cette approche a permis une analyse qualitative et quantitative de mélanges de phospholipides directement après extraction au chloroforme-méthanol. La composition en phospholipides est profondément modifiée lors de la croissance en milieu perdeutérié où l'on observe un lipide majoritaire, le phosphatidyl Inositol (PI), au lieu d'un mélange PC, PS PI en milieu hydrogéné.

  19. Uniform and selective deuteration in two-dimensional NMR of proteins

    International Nuclear Information System (INIS)

    LeMaster, D.M.

    1990-01-01

    This paper reports on the practicality of isotopic labeling, particularly deuteration, that has received considerable impetus from advances in molecular biology, which have allowed ready production of NMR quantities of labeled proteins. Protein expression in Escherichia coli allows use of the considerable metabolic genetics known for the organism in shaping the biosynthetic process to meet the labeling demands of the NMR experiments. In addition to deuteration's common use in spectral assignment problems, it also offers considerable potential for enhancing the quality of the nuclear Overhauser effect (NOE) distance and dihedral angle constraints used for solution structural analysis of proteins. Recent reviews emphasize the sample preparation and spectral benefits of protein deuteration

  20. Magnetic properties of nickel halide hydrates including deuteration effects

    Energy Technology Data Exchange (ETDEWEB)

    DeFotis, G.C., E-mail: gxdefo@wm.edu [Chemistry Department, College of William & Mary, Williamsburg, VA, 23187 United States (United States); Van Dongen, M.J.; Hampton, A.S.; Komatsu, C.H.; Trowell, K.T.; Havas, K.C.; Davis, C.M.; DeSanto, C.L. [Chemistry Department, College of William & Mary, Williamsburg, VA, 23187 United States (United States); Hays, K.; Wagner, M.J. [Chemistry Department, George Washington University, Washington, DC, 20052 United States (United States)

    2017-01-01

    Magnetic measurements on variously hydrated nickel chlorides and bromides, including deuterated forms, are reported. Results include locations and sizes of susceptibility maxima, T{sub max} and χ{sub max}, ordering temperatures T{sub c}, Curie constants and Weiss theta in the paramagnetic regime, and primary and secondary exchange interactions from analysis of low temperature data. For the latter a 2D Heisenberg model augmented by interlayer exchange in a mean-field approximation is applied. Magnetization data to 16 kG as a function of temperature show curvature and hysteresis characteristics quite system dependent. For four materials high field magnetization data to 70 kG at 2.00 K are also obtained. Comparison is made with theoretical relations for spin-1 models. Trends are apparent, primarily that T{sub max} of each bromide hydrate is less than for the corresponding chloride, and that for a given halide nD{sub 2}O (n=1 or 2) deuterates exhibit lesser T{sub max} than do nH{sub 2}O hydrates. A monoclinic unit cell determined from powder X-ray diffraction data on NiBr{sub 2}·2D{sub 2}O is different from and slightly larger than that of NiBr{sub 2}·2H{sub 2}O. This provides some rationale for the difference in magnetic properties between these. - Highlights: • The magnetism of Ni(II) chloride and bromide dihydrates and monohydrates is studied. • Effects of replacing H{sub 2}O by D{sub 2}O are examined for both hydration states and both halides. • Exchange interactions in bromides are weaker than in corresponding chlorides. • Exchange interactions are weaker in D{sub 2}O than in corresponding H{sub 2}O containing systems. • The unit cell of NiBr{sub 2}·2D{sub 2}O is different from and slightly larger than that of NiBr{sub 2}·2H{sub 2}O.

  1. Convenient syntheses of some α-deuterated alkyl mesityl ketones by exchange reactions

    International Nuclear Information System (INIS)

    Pinkus, A.G.; Sabesan, A.; Subramanyam, R.

    1981-01-01

    Three alkyl mesityl ketones (methyl, ethyl, and isopropyl) deuterated in the α-positions were prepared in good yields (82 to 89%) by exchange with deuterium oxide using dioxane solvent and various catalysts. Little or no exchange was obtained when reactions were attempted under conditions used in published procedures for other ketones. Infrared and 1 H nmr spectral evidence in support of structural assignments of deuterated ketones is given. (author)

  2. New quantum chemical computations of formamide deuteration support gas-phase formation of this prebiotic molecule

    Science.gov (United States)

    Skouteris, D.; Vazart, F.; Ceccarelli, C.; Balucani, N.; Puzzarini, C.; Barone, V.

    2017-06-01

    Based on recent work, formamide might be a potentially very important molecule in the emergence of terrestrial life. Although detected in the interstellar medium for decades, its formation route is still debated, whether in the gas phase or on the dust grain surfaces. Molecular deuteration has proven to be, in other cases, an efficient way to identify how a molecule is synthesized. For formamide, new published observations towards the IRAS16293-2422 B hot corino show that its three deuterated forms have all the same deuteration ratio, 2-5 per cent and that this is a factor of 3-8 smaller than that measured for H2CO towards the IRAS16293-2422 protostar. Following a previous work on the gas-phase formamide formation via the reaction NH2 + H2CO → HCONH2 + H, we present here new calculations of the rate coefficients for the production of monodeuterated formamide through the same reaction, starting from monodeuterated NH2 or H2CO. Some misconceptions regarding our previous treatment of the reaction are also cleared up. The results of the new computations show that, at the 100 K temperature of the hot corino, the rate of deuteration of the three forms is the same, within 20 per cent. On the contrary, the reaction between non-deuterated species proceeds three times faster than that with deuterated ones. These results confirm that a gas-phase route for the formation of formamide is perfectly in agreement with the available observations.

  3. The impact of deuteration on natural and synthetic lipids: A neutron diffraction study.

    Science.gov (United States)

    Luchini, Alessandra; Delhom, Robin; Demé, Bruno; Laux, Valérie; Moulin, Martine; Haertlein, Michael; Pichler, Harald; Strohmeier, Gernot A; Wacklin, Hanna; Fragneto, Giovanna

    2018-02-05

    The structural investigation of cellular membranes requires access to model systems where the molecular complexity is representative of the cellular environment and that allow for the exploitation of structural techniques. Neutron scattering, and in particular neutron diffraction can provide unique and detailed information on the structure of lipid membranes. However, deuterated samples are desirable to fully exploit this powerful method. Recently, the extraction of lipids from microorganisms grown in deuterated media was demonstrated to be both an attracting route to obtain complex lipid mixtures resembling the composition of natural membranes, and to producing deuterated molecules in a very convenient way. A full characterization of these deuterated extracts is hence pivotal for their use in building up model membrane systems. Here we report the structural characterization of lipid extracts obtained from Pichia pastoris by means of neutron diffraction measurements. In particular, we compare the structure of membranes extracted from yeast cells grown in a standard culture medium and in a corresponding deuterated culture medium. The results show that the different molecular composition of the deuterated and protiated lipid extracts induce different structural organization of the lipid membranes. In addition, we compare these membranes composed of extracted yeast lipids with stacked bilayers prepared from synthetic lipid mixtures. Copyright © 2018 Elsevier B.V. All rights reserved.

  4. Insight into nitrous oxide production processes in the western North Pacific based on a marine ecosystem isotopomer model

    Science.gov (United States)

    Yoshikawa, C.; Sasai, Y.; Wakita, M.; Honda, M. C.; Fujiki, T.; Harada, N.; Makabe, A.; Matsushima, S.; Toyoda, S.; Yoshida, N.; Ogawa, N. O.; Suga, H.; Ohkouchi, N.

    2016-02-01

    Based on the observed inverse relationship between the dissolved oxygen and N2O concentrations in the ocean, previous models have indirectly predicted marine N2O emissions from the apparent oxygen utilization (AOU), In this study, a marine ecosystem model that incorporates nitrous oxide (N2O) production processes (i.e., ammonium oxidation during nitrification and nitrite reduction during nitrifier denitrification) was newly developed to estimate the sea-air N2O flux and to quantify N2O production processes. Site preference of 15N (SP) in N2O isotopomers (14N15N16O and 15N14N16O) and the average nitrogen isotope ratio (δ15N) were added to the model because they are useful tracers to distinguish between ammonium oxidation and nitrite reduction. This model was applied to two contrasting time series sites, a subarctic station (K2) and a subtropical station (S1) in the western North Pacific. The model was validated with observed nitrogen concentration and nitrogen isotopomer datasets, and successfully simulated the higher N2O concentrations, higher δ15N values, and higher site preference values for N2O at K2 compared with S1. The annual mean N2O emissions were estimated to be 34 mg N m-2 yr-1 at K2 and 2 mg N m-2 yr-1 at S1. Using this model, we conducted three case studies: 1) estimating the ratio of in-situ biological N2O production to nitrate (NO3-) production during nitrification, 2) estimating the ratio of N2O production by ammonium oxidation to that by nitrite reduction, and 3) estimating the ratio of AOA ammonium oxidation to AOB ammonium oxidation. The results of case studies estimated the ratios of in situ biological N2O production to nitrate production during nitrification to be 0.22% at K2 and 0.06% at S1. It is also suggested that N2O was mainly produced via ammonium oxidation at K2 but was produced via both ammonium oxidation and nitrite reduction at S1. It is also revealed that 80% of the ammonium oxidation at K2 was caused by archaea in the subsurface

  5. Deuteration of human carbonic anhydrase for neutron crystallography: Cell culture media, protein thermostability, and crystallization behavior.

    Science.gov (United States)

    Koruza, K; Lafumat, B; Végvári, Á; Knecht, W; Fisher, S Z

    2018-05-01

    Deuterated proteins and other bio-derived molecules are important for NMR spectroscopy, neutron reflectometry, small angle neutron scattering, and neutron protein crystallography. In the current study we optimized expression media and cell culture conditions to produce high levels of 3 different deuterated human carbonic anhydrases (hCAs). The labeled hCAs were then characterized and tested for deuterium incorporation by mass spectrometry, temperature stability, and propensity to crystallize. The results show that is possible to get very good yields (>10 mg of pure protein per liter of cell culture under deuterated conditions) and that protein solubility is unaffected at the crystallization concentrations tested. Using unlabeled carbon source and recycled heavy water, we were able to get 65-77% deuterium incorporation, sufficient for most neutron-based techniques, and in a very cost-effective way. For most deuterated proteins characterized in the literature, the solubility and thermal stability is reduced. The data reported here is consistent with these observations and it was clear that there are measurable differences between hydrogenous and deuterated versions of the same protein in T m and how they crystallize. Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

  6. Giant deuteron migration during the isosymmetric phase transition in deuterated 3,5-pyridinedicarboxylic acid.

    Science.gov (United States)

    Ford, Samantha J; Delamore, Oliver J; Evans, John S O; McIntyre, Garry J; Johnson, Mark R; Radosavljević Evans, Ivana

    2011-12-23

    Deuterated 3,5-pyridinedicarboxylic acid exhibits reversible temperature-induced deuteron migration of a magnitude unprecedented in this class of compounds. We used a combination of variable-temperature powder and single-crystal neutron diffraction and density functional theory (DFT)-based computational methods to elucidate the origin of this remarkable behaviour. Single-crystal neutron diffraction shows that between 15 and 300 K, the deuteron moves by 0.32(1) Å and the structure changes from a low-temperature N-D···O form to a high-temperature N···D-O form. Variable-temperature powder neutron-diffraction data, which was fitted by using parametric Rietveld refinement, show that this deuteron migration is due to an isosymmetric, first-order phase transition that occurs by growth of the daughter phase in the parent-phase matrix. Similar phase transitions are observed in two selectively deuterated forms of the material. DFT calculations demonstrate the role of phonons and show that vibrational free-energy stabilisation, which plays a key role in the observed structural phase transitions, is more pronounced in the fully deuterated material and proportional to the mass of the molecule, that is, the level of deuteration. This is consistent with our experimental work, for which distinct crystallographic phase transitions were clearly observed for the three deuterated systems, but not for the fully protonated material. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. Formation of H_2^+ and its Isotopomers by Radiative Association: the Role of Shape and Feshbach Resonances

    Science.gov (United States)

    Beyer, Maximilian; Merkt, Frederic

    2017-06-01

    The recent observations [1,2] of shape and Feshbach resonances in the high-resolution photoelectron spectra of H_2, HD and D_2 in the vicinity of the dissociation thresholds of H_2^+, HD^+ and D_2^+ raise questions concerning their potential role in the formation of H_2^+ and its isotopomers in the early universe by radiative association, a topic of astrophysical interest [3]. Close-coupling calculations for the cross sections of the reactions {H}^+ + {H} &\\to {H}_2^+ + hν {H}^+ + {D} &\\to {HD}^+ + hν {D}^+ + {H} &\\to {HD}^+ + hν {D}^+ + {D} &\\to {D}_2^+ + hν, will be presented which take into account nonadiabatic couplings involving rovibronic and hyperfine interactions, as well as relativistic and radiative corrections. The calculated energies and widths will be compared with the experimental results of Ref. [1,2] for H_2^+ and new data for HD^+ and D_2^+. The effect of the resonances on the radiative association rate coefficients will be discussed, also in comparison with earlier studies [4]. [1] M. Beyer and F. Merkt, Phys. Rev. Lett. 116, 093001 (2016). [2] M. Beyer and F. Merkt, J. Mol. Spectrosc. 330, 147 (2016). [3] Molecule formation in dust-poor environments, J. F. Babb and K. P. Kirby, in "The molecular astrophysics of stars and galaxies", T. W. Hartquist and D. A. Williams, eds., Oxford University Press, Oxford, 1998, pp. 11-34. [4] D. E. Ramaker and J. M. Peek, Phys. Rev. A 13, 58 (1976).

  8. Low-temperature structural phase transition in deuterated and protonated lithium acetate dihydrate

    Energy Technology Data Exchange (ETDEWEB)

    Schroeder, F., E-mail: schroeder@kristall.uni-frankfurt.d [Goethe-Universitaet Frankfurt am Main, Institut fuer Geowissenschaften, Abt. Kristallographie, Altenhoeferallee 1, 60438 Frankfurt am Main (Germany); Winkler, B.; Haussuehl, E. [Goethe-Universitaet Frankfurt am Main, Institut fuer Geowissenschaften, Abt. Kristallographie, Altenhoeferallee 1, 60438 Frankfurt am Main (Germany); Cong, P.T.; Wolf, B. [Goethe-Universitaet Frankfurt am Main, Physikalisches Institut, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main (Germany); Avalos-Borja, M. [Instituto Potosino de Investigacion Cientifica y Tecnologica, A.C. Camino a la Presa San Jose 2055, Col. Lomas 4 seccion CP 78216, San Luis Potosi (Mexico); Quilichini, M.; Hennion, B. [Laboratoire Leon Brillouin, CEN Saclay, 91191 Gif-sur-Yvette (France)

    2010-08-15

    Heat capacity measurements of protonated lithium acetate dihydrate show a structural phase transition at T = 12 K. This finding is in contrast to earlier work, where it was thought that only the deuterated compound undergoes a low temperature structural phase transition. This finding is confirmed by low temperature ultrasound spectroscopy, where the structural phase transition is associated with a velocity decrease of the ultrasonic waves, i.e. with an elastic softening. We compare the thermodynamic properties of the protonated and deuterated compounds and discuss two alternatives for the mechanism of the phase transition based on the thermal expansion measurements.

  9. Synthesis and Near-Infrared Luminescence of a Deuterated Conjugated Porphyrin Dimer for Probing the Mechanism of Non-Radiative Deactivation (Postprint)

    National Research Council Canada - National Science Library

    Rogers, Joy E; Fleitz, Paul A; Frampton, Michael J; Anderson, Harry L; Accorsi, Gianluca; Armaroli, Nicola; McEwan, Kenneth J

    2007-01-01

    .... However their ultrafast S(sub-1)-S(sub-0) deactivation limits potential applications. We have synthesised a deuterated fused porphyrin dimer to test whether deuteration influences the rate of non-radiative deactivation...

  10. A Neutron Scattering Study of Phonons in Per-Deuterated S-Triazine

    DEFF Research Database (Denmark)

    Doue, M. T.; Heilmann, I. U.; Kjems, Jørgen

    1983-01-01

    The lattice dynamics of a fully-deuterated single crystal of s-triazine is investigated using the technique of coherent inelastic neutron scattering. Detailed measurements of the temperature dependence of the dispersion of the soft acoustic mode associated with the ferroelastic phase transition...

  11. Gas Chromatographic Mass Spectrometric Determination of Myo-inositol in Humans Utilizing a Deuterated Internal Standard

    DEFF Research Database (Denmark)

    Andersen, Jan Rud; Larsen, Elfinn; Harbo, Helge

    1982-01-01

    The isotopic dilution technique was used for determining the content of myo-inositol in human urine, plasma and haemolysed erythrocyte samples. A deuterated myo-inositol, synthesized from inosose-2 by base-catalysed exchange of hydrogens by deuterium, followed by reduction of the inosose with 2H2...

  12. Use of deuterated tyrosine and phenylalanine in the study of catecholamine and aromatic acid metabolism

    International Nuclear Information System (INIS)

    Curtius, H.C.; Redweik, U.; Steinmann, B.; Leimbacher, W.; Wegmann, H.

    1975-01-01

    Deuterated tyrosine and phenylalanine have been used for the study of their respective metabolism in patients with phenylketonuria (PKU) and in healthy persons. Urinary excretion of dopamine and its metabolites was studied by GC-MS after oral administration of deuterated L-tyrosine in 2 patients with PKU and in normal controls at low and high plasma phenylalanine levels. From these studies it seemed that the in vivo tyrosine 3-hydroxylase activity and thus the formation of L-dopa depend on the phenylalanine concentration in plasma and also in tissues. After loading 3 mentally retarded patients with 3,5-[ 2 H 2 ]-4-hydroxyphenylalanine, we found, among others, excretion of deuterated m-hydroxyphenyl-hydracrylic acid, p-hydroxymandelic acid, p-hydroxybenzoic acid, p-hydroxyhippuric acid, benzoic acid and hippuric acid. An intramolecular rearrangement is postulated. Deuterated phenylalanine was used to investigate phenylalanine and dopa metabolism in PKU. In addition, one untreated person with PKU of normal intelligence and normal excretion of catecholamines at high plasma phenylalanine concentration was investigated in order to see whether there exists an alternative metabolic pathway from phenylalanine to dopa formation

  13. Synthesis of chromium (V) complex in deuterated propanediol for a target with ``frozen'' polarisation of deuterons

    Science.gov (United States)

    Bunyatova, E. I.; Bubnov, N. N.

    1987-02-01

    A deuteron polarized frozen spin target was developed. To reach higher deuteron content and maximum polarization, the chromium (V) complex with ligands on the basis of fully deuterated propanediol-1,2 was synthesized. The synthesis and the EPR investigation is described. The research has been performed at the Laboratory of Nuclear Problems, JINR.

  14. Experimental Observations of Nuclear Activity in Deuterated Materials Subjected to a Low-Energy Photon Beam

    Science.gov (United States)

    Steinetz, Bruce M.; Benyo, Theresa L.; Pines, Vladimir; Pines, Marianna; Forsley, Lawrence P.; Westmeyer, Paul A.; Chait, Arnon; Becks, Michael D.; Martin, Richard E.; Hendricks, Robert C.; hide

    2017-01-01

    Exposure of highly deuterated materials to a low-energy (nom. 2 MeV) photon beam resulted in nuclear activity of both the parent metals of hafnium and erbium and a witness material (molybdenum) mixed with the reactants. Gamma spectral analysis of all deuterated materials, ErD2.8+C36D74+Mo and HfD2+C36D74+Mo, showed that nuclear processes had occurred as shown by unique gamma signatures. For the deuterated erbium specimens, posttest gamma spectra showed evidence of radioisotopes of erbium ((163)Er and (171)Er) and of molybdenum ((99)Mo and (101)Mo) and by beta decay, technetium (99mTc and 101Tc). For the deuterated hafnium specimens, posttest gamma spectra showed evidence of radioisotopes of hafnium (180mHf and 181Hf) and molybdenum ((99)Mo and (101)Mo), and by beta decay, technetium ((99m)Tc and (101)Tc). In contrast, when either the hydrogenated or non-gas-loaded erbium or hafnium materials were exposed to the gamma flux, the gamma spectra revealed no new isotopes. Neutron activation materials showed evidence of thermal and epithermal neutrons. CR-39 solid-state nuclear track detectors showed evidence of fast neutrons with energies between 1.4 and 2.5 MeV and several instances of triple tracks, indicating (is) greater than 10 MeV neutrons. Further study is required to determine the mechanism causing the nuclear activity.

  15. Synthesis of multiple deuterated N-n-propyl-norapomorphine N-(d/sub 7/) and derivatives

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Yigong; Trainor, T.M.; Vouros, Paul; Neumeyer, J.L.

    1988-03-01

    Novapomorphine has been labelled using n-propyl iodide through alkylation of norcodeine followed by a multistep route which also affords the related deuterated analogs N-n-propylnorapocodeine, the prodrug 10,11-methylenedioxy-NPA and 10,11-dimethoxy-NPA.

  16. Development of a new neutron mirror made of deuterated Diamond-like carbon

    International Nuclear Information System (INIS)

    Sakurai, Dai; Chiba, Junsei; Shimizu, Hirohiko M; Nishimura, Daiki; Ino, Takashi; Kaneko, Naokatsu; Muto, Suguru; Kakusho, Nobunori; Seki, Yoshichika; Katayama, Ryo; Kitaguchi, Masaaki; Mishima, Kenji; Yamashita, Satoru; Ozeki, Kazuhide; Yoshioka, Tamaki

    2014-01-01

    We developed a new neutron mirror made of Diamond-like carbon (DLC). DLC is a film of amorphous carbon that has characteristics of both diamond and graphite. We produced DLC mirrors by ionization deposition method which is one of the chemical vapor deposition (CVD). Generally, DLC made by CVD contents a few tens of percentages of hydrogen. It decreases the Fermi potential of the DLC coating because hydrogen has negative Fermi potential. In order to increase the Fermi potential of the coating, we deuterated the DLC by using deuterated benzene for the source gas. The characteristics of the deuterated DLC(DDLC) coating was evaluated by RBS, ERDA, x-ray reflectivity, AFM. As a result, DDLC coating has 243 neV due to deuteration, which is the same level as Ni. The RMS of height of the DDLC was 0.6nm so that the DDLC coating can be applied for a focusing mirror or specular transportation of pulsed neutron. Besides, we also develop Hydrogen/Deuterium DLC multiple layer mirror. So far, 4 layers mirror has been succeeded.

  17. Rotational isomers of hydroxy deuterated o- and m-cresols studied by ultraviolet high resolution experiments

    NARCIS (Netherlands)

    Myszkiewicz, G.; Meerts, W.L.; Ratzer, C.; Schmitt, M.

    2005-01-01

    The laser induced fluorescence spectra of several torsional transitions of the S-1 ← S-0 electronic transition were recorded for the hydroxy deuterated o- and m- cresols. Both cis and trans rotamers were observed in a high resolution molecular beam experiment. The spectra were analyzed using a

  18. Biosynthetic preparation of selectively deuterated phosphatidylcholine in genetically modified Escherichia coli

    DEFF Research Database (Denmark)

    Maric, Selma; Thygesen, Mikkel Boas; Schiller, Jürgen

    2015-01-01

    Phosphatidylcholine (PC) is a major component of eukaryotic cell membranes and one of the most commonly used phospholipids for reconstitution of membrane proteins into carrier systems such as lipid vesicles, micelles and nanodiscs. Selectively deuterated versions of this lipid have many applicati...

  19. Deuterated detergents for structural and functional studies of membrane proteins: Properties, chemical synthesis and applications.

    Science.gov (United States)

    Hiruma-Shimizu, Kazumi; Shimizu, Hiroki; Thompson, Gary S; Kalverda, Arnout P; Patching, Simon G

    2015-01-01

    Detergents are amphiphilic compounds that have crucial roles in the extraction, purification and stabilization of integral membrane proteins and in experimental studies of their structure and function. One technique that is highly dependent on detergents for solubilization of membrane proteins is solution-state NMR spectroscopy, where detergent micelles often serve as the best membrane mimetic for achieving particle sizes that tumble fast enough to produce high-resolution and high-sensitivity spectra, although not necessarily the best mimetic for a biomembrane. For achieving the best quality NMR spectra, detergents with partial or complete deuteration can be used, which eliminate interfering proton signals coming from the detergent itself and also eliminate potential proton relaxation pathways and strong dipole-dipole interactions that contribute line broadening effects. Deuterated detergents have also been used to solubilize membrane proteins for other experimental techniques including small angle neutron scattering and single-crystal neutron diffraction and for studying membrane proteins immobilized on gold electrodes. This is a review of the properties, chemical synthesis and applications of detergents that are currently commercially available and/or that have been synthesized with partial or complete deuteration. Specifically, the detergents are sodium dodecyl sulphate (SDS), lauryldimethylamine-oxide (LDAO), n-octyl-β-D-glucoside (β-OG), n-dodecyl-β-D-maltoside (DDM) and fos-cholines including dodecylphosphocholine (DPC). The review also considers effects of deuteration, detergent screening and guidelines for detergent selection. Although deuterated detergents are relatively expensive and not always commercially available due to challenges associated with their chemical synthesis, they will continue to play important roles in structural and functional studies of membrane proteins, especially using solution-state NMR.

  20. Refractive indices in the whole transmission range of partially deuterated KDP crystals

    Directory of Open Access Journals (Sweden)

    Lili Zhu

    2013-11-01

    Full Text Available Refractive indices of partially deuterated potassium dihydrogen phosphate (DKDP crystals with 55%, 70% and 80% deuterium contents were measured by auto-collimation method at 293 K between 0.254 to 1.529 μm. Dependence of refractive indices of DKDP on deuterium content show different trend in the infrared region as in uv-visible region. Dependence of n2 (the square of refractive index on the mole fraction of deuterium shows a difference between pure KDP and partially deuterated KDP. The Sellmeier equations were obtained by the least square method. The non-critical phase matching angles calculated from the fitted formula were in good agreement with laser experiment results, by which the reliability of these Sellmeier equations was confirmed.

  1. TEM and EELS study of deuterated carbon: application to the fuel retention in tokamaks

    International Nuclear Information System (INIS)

    Bernier, N.

    2007-12-01

    We developed a methodology, based on the combination of TEM and EELS techniques, for a structural and chemical characterization, at a high spatial resolution, of a wide range of carbon materials. We i) optimized, in the framework of theoretical models, the sp2 fraction quantification from pure carbons by EELS ii) transferred this quantification to deuterated amorphous carbon layers iii) showed, from graphitized carbons, how the TEM-EELS combination allows to detect low concentrations of implanted D. Due to the accomplishment of these developments, we applied our approach to the study of D retention in composites C/C, which are the plasma-facing materials in TS. We showed that specific localized retention sites correspond to relatively large (∼ 3 mm.) cracks between fibres and matrix; such cracks offer a simple and direct path for deuterated amorphous carbon. The particle balance performed in TS is discussed in the light of this trapping mechanism. (author)

  2. Solid polystyrene and deuterated polystyrene light output response to fast neutrons

    Science.gov (United States)

    Simpson, R.; Danly, C.; Glebov, V. Yu.; Hurlbut, C.; Merrill, F. E.; Volegov, P. L.; Wilde, C.

    2016-04-01

    The Neutron Imaging System has proven to be an important diagnostic in studying DT implosion characteristics at the National Ignition Facility. The current system depends on a polystyrene scintillating fiber array, which detects fusion neutrons born in the DT hotspot as well as neutrons that have scattered to lower energies in the surrounding cold fuel. Increasing neutron yields at NIF, as well as a desire to resolve three-dimensional information about the fuel assembly, have provided the impetus to build and install two additional next-generation neutron imaging systems. We are currently investigating a novel neutron imaging system that will utilize a deuterated polystyrene (CD) fiber array instead of standard hydrogen-based polystyrene (CH). Studies of deuterated xylene or deuterated benzene liquid scintillator show an improvement in imaging resolution by a factor of two [L. Disdier et al., Rev. Sci. Instrum. 75, 2134 (2004)], but also a reduction in light output [V. Bildstein et al., Nucl. Instrum. Methods Phys. Res., Sect. A 729, 188 (2013); M. I. Ojaruega, Ph.D. thesis, University of Michigan, 2009; M. T. Febbraro, Ph.D. thesis, University of Michigan, 2014] as compared to standard plastic. Tests of the relative light output of deuterated polystyrene and standard polystyrene were completed using 14 MeV fusion neutrons generated through implosions of deuterium-tritium filled capsules at the OMEGA laser facility. In addition, we collected data of the relative response of these two scintillators to a wide energy range of neutrons (1-800 MeV) at the Weapons Neutrons Research Facility. Results of these measurements are presented.

  3. Solid polystyrene and deuterated polystyrene light output response to fast neutrons.

    Science.gov (United States)

    Simpson, R; Danly, C; Glebov, V Yu; Hurlbut, C; Merrill, F E; Volegov, P L; Wilde, C

    2016-04-01

    The Neutron Imaging System has proven to be an important diagnostic in studying DT implosion characteristics at the National Ignition Facility. The current system depends on a polystyrene scintillating fiber array, which detects fusion neutrons born in the DT hotspot as well as neutrons that have scattered to lower energies in the surrounding cold fuel. Increasing neutron yields at NIF, as well as a desire to resolve three-dimensional information about the fuel assembly, have provided the impetus to build and install two additional next-generation neutron imaging systems. We are currently investigating a novel neutron imaging system that will utilize a deuterated polystyrene (CD) fiber array instead of standard hydrogen-based polystyrene (CH). Studies of deuterated xylene or deuterated benzene liquid scintillator show an improvement in imaging resolution by a factor of two [L. Disdier et al., Rev. Sci. Instrum. 75, 2134 (2004)], but also a reduction in light output [V. Bildstein et al., Nucl. Instrum. Methods Phys. Res., Sect. A 729, 188 (2013); M. I. Ojaruega, Ph.D. thesis, University of Michigan, 2009; M. T. Febbraro, Ph.D. thesis, University of Michigan, 2014] as compared to standard plastic. Tests of the relative light output of deuterated polystyrene and standard polystyrene were completed using 14 MeV fusion neutrons generated through implosions of deuterium-tritium filled capsules at the OMEGA laser facility. In addition, we collected data of the relative response of these two scintillators to a wide energy range of neutrons (1-800 MeV) at the Weapons Neutrons Research Facility. Results of these measurements are presented.

  4. Spectral gain investigation of large size OPCPA based on partially deuterated KDP

    Science.gov (United States)

    Galimberti, Marco; Boyle, Alexis; Musgrave, Ian O.; Oliveira, Pedro; Pepler, Dave; Shaikh, Waseem; Winstone, Trevor B.; Wyatt, Adam; Hernandez-Gomez, Cristina

    2018-01-01

    The Optical Parametric Chirped Pulse Amplification is one of the most promising techniques to deliver 20PW laser system. The already available KD*P in large size is a good candidate as nonlinear crystal. In this article we report the experimental analysis of the spectral small signal gain for KD*P at 70% deuteration level for different phase matching and non-collinear angle. The data is also compared with a theoretical model.

  5. Solid polystyrene and deuterated polystyrene light output response to fast neutrons

    International Nuclear Information System (INIS)

    Simpson, R.; Danly, C.; Merrill, F. E.; Volegov, P. L.; Wilde, C.; Glebov, V. Yu.; Hurlbut, C.

    2016-01-01

    The Neutron Imaging System has proven to be an important diagnostic in studying DT implosion characteristics at the National Ignition Facility. The current system depends on a polystyrene scintillating fiber array, which detects fusion neutrons born in the DT hotspot as well as neutrons that have scattered to lower energies in the surrounding cold fuel. Increasing neutron yields at NIF, as well as a desire to resolve three-dimensional information about the fuel assembly, have provided the impetus to build and install two additional next-generation neutron imaging systems. We are currently investigating a novel neutron imaging system that will utilize a deuterated polystyrene (CD) fiber array instead of standard hydrogen-based polystyrene (CH). Studies of deuterated xylene or deuterated benzene liquid scintillator show an improvement in imaging resolution by a factor of two [L. Disdier et al., Rev. Sci. Instrum. 75, 2134 (2004)], but also a reduction in light output [V. Bildstein et al., Nucl. Instrum. Methods Phys. Res., Sect. A 729, 188 (2013); M. I. Ojaruega, Ph.D. thesis, University of Michigan, 2009; M. T. Febbraro, Ph.D. thesis, University of Michigan, 2014] as compared to standard plastic. Tests of the relative light output of deuterated polystyrene and standard polystyrene were completed using 14 MeV fusion neutrons generated through implosions of deuterium-tritium filled capsules at the OMEGA laser facility. In addition, we collected data of the relative response of these two scintillators to a wide energy range of neutrons (1-800 MeV) at the Weapons Neutrons Research Facility. Results of these measurements are presented.

  6. Labelling by deuteration and nitroxide radicals of mono-, oligo- and polysaccharides (cellulose and amylose)

    International Nuclear Information System (INIS)

    Odier, Leon.

    1975-01-01

    The application of NMR and deuteration labelling to the investigation of polysaccharides has led to considerable progress in recent years in the knowledge of these compounds. Although far more recent, the introduction of spin labelling techniques in the investigation of polymers, has given rise to interesting EPR studies of synthetic and natural macromolecules, but nothing appears to have been accomplished in the area of spin labelling of polysaccharides. This work was aimed at applying these two techniques to the study of glucose derivatives and of some of its oligomers (low molecular weight polymers): cellobiose, maltose and cyclodextrins; and its polymers: cellulose and amylose. Irrespective of the technique employed, the complexity of the polymers and problems connected with handling them always require the same procedure: an initial study of a model compound generally prepared from the monomer or an oligomer (dimer), followed by the oligomers, and finally the polymer. Part 1 is devoted to the deuteration labelling of mono- and oligosaccharides. Part 2 concerns spin labelling of cellulose acetate. In part 3, an attempt is made to apply the spin labelling technique to the determination of conformations of two disaccharides of different glycosidic configurations: cellobiose and maltose. Part 4 is devoted to spin and deuteration labelling of α and β cyclodextrins [fr

  7. Growth, crystal structure and characterization of a nonlinear optical crystal: Deuterated L-arginine trifluoroacetate

    Energy Technology Data Exchange (ETDEWEB)

    Sun, G.H., E-mail: sgh2@mail.sdu.edu.cn [State Key Lab of Crystal Materials and Institute of Crystal Materials, Shandong, University, Jinan, 250100 (China); Zhang, G.H.; Sun, Z.H.; Wang, X.Q. [State Key Lab of Crystal Materials and Institute of Crystal Materials, Shandong, University, Jinan, 250100 (China); Xu, D., E-mail: xdoffice@sdu.edu.cn [State Key Lab of Crystal Materials and Institute of Crystal Materials, Shandong, University, Jinan, 250100 (China)

    2011-05-16

    Research highlights: {yields} Bulk crystals of deuterated L-arginine trifluoroacetate (DLATF) have been grown successfully. {yields} The distances between the N-D covalent bonds in DLATF crystal is about 0.4% shorter than N-H bonds in LATF crystal, which agrees with other reports. {yields} Due to deuterating, the degree of transmission and the transparent region of the crystal have been improved observably. {yields} Furthermore, the crystal possesses relatively large specific heat and higher laser damage threshold. - Abstract: In order to reduce the absorption of L-arginine trifluoroacetate (LATF) in near-infrared region, deuterated LATF (DLATF) crystals have been synthesized and grown successfully. The grown crystals were characterized by the single crystal and powder X-ray diffraction methods, Fourier transform infrared and Raman spectra. DLATF belongs to monoclinic space system, space group P2{sub 1}, with unit cell parameters: a = 10.547(6), b = 5.696(3), c = 10.825(6) A, {beta} = 106.747(10){sup o}, V = 622.8(6) A{sup 3} and Z = 2. Thermogravimetric (TG) and differential thermal analysis (DTA) studies were carried out to characterize its thermal behaviors. The specific heat has been investigated in the temperature range of 293-453 K. Optical transmission spectrum and second harmonic generation were investigated to study its optical properties. The laser-induced damage threshold measurement revealed that the crystal has a higher damage threshold than that of LATF.

  8. FORMALDEHYDE AND METHANOL DEUTERATION IN PROTOSTARS: FOSSILS FROM A PAST FAST HIGH-DENSITY PRE-COLLAPSE PHASE

    Energy Technology Data Exchange (ETDEWEB)

    Taquet, V.; Ceccarelli, C.; Kahane, C. [UJF-Grenoble 1/CNRS-INSU, Institut de Planetologie et d' Astrophysique de Grenoble (IPAG) UMR 5274, F-38041 Grenoble (France)

    2012-03-20

    Extremely high deuteration of several molecules has been observed around low-mass protostars for a decade. Among them, formaldehyde and methanol present particularly high deuteration, with observations of abundant doubly and triply deuterated forms. Both species are thought to be mainly formed on interstellar grains during the low-temperature and dense pre-collapse phase by H and D atom additions on the iced CO. We present here a theoretical study of the formaldehyde and methanol deuteration obtained with our gas-grain model, GRAINOBLE. This model takes into account the multilayer nature of the mantle and explores the robustness of the results against the uncertainties of poorly constrained chemical and surface model parameters. The comparison of the model predictions with the observations leads to two major results: (1) the observed high deuteration is obtained during the last phase of the pre-collapse stage, when the density reaches {approx}5 Multiplication-Sign 10{sup 6} cm{sup -3}, and this phase is fast, lasting only several thousands years; and (2) D and H abstraction and substitution reactions are crucial in making up the observed deuteration ratios. This work shows the power of chemical composition as a tool to reconstruct the past history of protostars.

  9. Threshold Photoelectron Spectroscopy of the Methyl Radical Isotopomers, CH3, CH2D, CHD2 and CD3: Synergy between VUV Synchrotron Radiation Experiments and Explicitly Correlated Coupled Cluster Calculations

    Czech Academy of Sciences Publication Activity Database

    Cunha de Miranda, B. K.; Alcaraz, Ch.; Elhanine, M.; Noller, B.; Hemberger, P.; Fischer, I.; Garcia, G. A.; Soldi-Lose, H.; Gans, B.; Mendes, L. A. V.; Boyé-Péronne, S.; Douin, S.; Žabka, Ján; Botschwina, P.

    2010-01-01

    Roč. 114, č. 14 (2010), s. 4818-4830 ISSN 1089-5639 Grant - others:CNRS-AVCR(FR) 20201 Institutional research plan: CEZ:AV0Z40400503 Keywords : Threshold photoelectron spectroscopy * isotopomers * clusters Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 2.732, year: 2010

  10. The Quantum Nature of Drug-Receptor Interactions: Deuteration Changes Binding Affinities for Histamine Receptor Ligands.

    Science.gov (United States)

    Kržan, Mojca; Vianello, Robert; Maršavelski, Aleksandra; Repič, Matej; Zakšek, Maja; Kotnik, Kristina; Fijan, Estera; Mavri, Janez

    2016-01-01

    In this article we report a combined experimental and computational study concerning the effects of deuteration on the binding of histamine and two other histaminergic agonists to 3H-tiotidine-labeled histamine H2 receptor in neonatal rat astrocytes. Binding affinities were measured by displacing radiolabeled tiotidine from H2 receptor binding sites present on cultured neonatal rat astrocytes. Quantum-chemical calculations were performed by employing the empirical quantization of nuclear motion within a cluster model of the receptor binding site extracted from the homology model of the entire H2 receptor. Structure of H2 receptor built by homology modelling is attached in the supporting information (S1 Table) Experiments clearly demonstrate that deuteration affects the binding by increasing the affinity for histamine and reducing it for 2-methylhistamine, while basically leaving it unchanged for 4-methylhistamine. Ab initio quantum-chemical calculations on the cluster system extracted from the homology H2 model along with the implicit quantization of the acidic N-H and O-H bonds demonstrate that these changes in the binding can be rationalized by the altered strength of the hydrogen bonding upon deuteration known as the Ubbelohde effect. Our computational analysis also reveals a new mechanism of histamine binding, which underlines an important role of Tyr250 residue. The present work is, to our best knowledge, the first study of nuclear quantum effects on ligand receptor binding. The ligand H/D substitution is relevant for therapy in the context of perdeuterated and thus more stable drugs that are expected to enter therapeutic practice in the near future. Moreover, presented approach may contribute towards understanding receptor activation, while a distant goal remains in silico discrimination between agonists and antagonists based on the receptor structure.

  11. Influence of laser frequency chirp on deuteron energy from laser-driven deuterated methane cluster expansion

    Energy Technology Data Exchange (ETDEWEB)

    Li, H.Y. [College of Physics and Electronic Information, Tianjin Normal University, Tianjin, P.R. (China); Liu, J.S. [State Key Laboratory of High Field Laser Physics, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai, P.R. (China)

    2010-06-15

    The simulations of three-dimensional particle dynamics are carried out to investigate the Coulomb explosion dynamics of deuterated methane clusters under the irradiation of an ultrashort intense laser pulse. The final kinetic energy of deuterons produced from the cluster explosion is calculated as a function of the pulse width, the laser intensity and the pulse chirp. It is found that the deuteron energy obtained in an intense laser pulse with negative chirp is higher than that with positive chirp, which agrees qualitatively with the experimental results reported by Fukuda et al. [Y. Fukuda et al., Phys. Rev. A 67, 061201 (2003)]. (authors)

  12. Influence of laser frequency chirp on deuteron energy from laser-driven deuterated methane cluster expansion

    Science.gov (United States)

    Li, H. Y.; Liu, J. S.

    2010-06-01

    The simulations of three-dimensional particle dynamics are carried out to investigate the Coulomb explosion dynamics of deuterated methane clusters under the irradiation of an ultrashort intense laser pulse. The final kinetic energy of deuterons produced from the cluster explosion is calculated as a function of the pulse width, the laser intensity and the pulse chirp. It is found that the deuteron energy obtained in an intense laser pulse with negative chirp is higher than that with positive chirp, which agrees qualitatively with the experimental results reported by Fukuda et al. [Y. Fukuda et al., Phys. Rev. A 67, 061201 (2003)].

  13. Effects of deuterated water upon specific activity of some marker enzymes for cytosol and plasmatic membrane

    International Nuclear Information System (INIS)

    Buzgariu, Wanda; Coroiu, Viorica; Moldovan, Lucia; Titescu, G.; Stefanescu, I.

    2004-01-01

    Recently, numerous studies were devoted to the effects of an increased environmental deuterium concentration on physiological characteristics of various biological systems, from monocellular organisms up to mammals. Within these preoccupations the experiments on enzyme activity and parameters are of special interest since they throw light upon the mechanisms in metabolic biochemical reactions (glycolysis, photosynthesis, transport across membranes, etc). The present work concerns the effects of heavy water upon the activity of some enzymes (dehydrogenase-LDH lactate and 5' nucleotidase) implied in different metabolic pathways, serving as functional indicators for some cellular compartments such as the cytosols and cellular membranes. Enzyme activity was determined by growing for 6 days the cells (Hep 2, CHO, fibroblasts) in deuterated culture media at different concentration levels (20%, 40%, 65% si 90%), as well as in a reaction medium deuterated at 99.96%. In case of the first experimental run the LDH activity was monitored for the three cellular lines (Hep 2, CHO, fibroblasts) for different time intervals (1 d, 3 d and 6 d). After the first 24 h of cells' exposure the activity values were similar regardless of the heavy water concentration in the medium. Exposing the cells for longer time (6 days) led to modifications of LDH activity. In contrast to the case of media with relatively moderate D 2 O content, cell growing in conditions of intense deuteration 65% and 90 % D 2 O) led to an increase of cytosolic enzyme activity of about 50%. In case of 5' nucleotidase after 6 days of cell cultivation in deuteration conditions the activity decreased to 50% and 70% from the value corresponding to normal conditions for cell growth. This diminution of the activity was characteristic for the media with 65% and 90% D 2 O. In the second experimental run the activities of dehydrogenase lactate and 5' nucleotidase from the cellular homogenate obtained from cells grown in

  14. Selectively deuterated liquid crystalline cyanoazobenzene side-chain polyesters. 2. Preparation and characterization of polyesters

    DEFF Research Database (Denmark)

    Kulinna, Christian; Hvilsted, Søren; Hendann, Claudia

    1998-01-01

    Two sets of specifically deuterated cyanoazobenzene side-chain polyadipates and polytetrade-canedioates have been prepared by transesterification in the melt. Combinations of three different, selectively deuterium labeled 2-[6-[4-[(4-cyanophenyl)azo]phenoxy]hexyl]-1,3-propanediols or the non...... calorimetry. Whereas the polytetradecanedioates show a complex thermal behaviour with a number of different phases, the polyadipates are less complex and both nematic and smectic A phases have been identified by polarizing optical microscopy. Solution 1H, 13C and 2H NMR spectroscopy have been utilized...

  15. Relationship between room temperature phosphorescence and deuteration position in a purely aromatic compound

    Science.gov (United States)

    Hirata, S.; Totani, K.; Watanabe, T.; Kaji, H.; Vacha, M.

    2014-01-01

    The development of organometallic and purely organic compounds showing room temperature phosphorescence (RTP) has several promising applications. We report a relationship between the phosphorescence characteristics and deuteration position in a purely organic aromatic compound. Hydrogen-deuterium exchange at the carbons where the lowest unoccupied molecular orbital is located is the most effective method to enhance the RTP lifetime and quantum yield. The increase in RTP lifetime comes from a decrease in the Franck-Condon factor while the enhancement of RTP yield is caused by an increase in intersystem crossing from the lowest singlet excited state to the lowest triplet excited state.

  16. Chemical evolution in the early phases of massive star formation. II. Deuteration

    Science.gov (United States)

    Gerner, T.; Shirley, Y. L.; Beuther, H.; Semenov, D.; Linz, H.; Albertsson, T.; Henning, Th.

    2015-07-01

    The chemical evolution in high-mass star-forming regions is still poorly constrained. Studying the evolution of deuterated molecules allows distinguishing between subsequent stages of high-mass star formation regions based on the strong temperature dependence of deuterium isotopic fractionation. We observed a sample of 59 sources including 19 infrared dark clouds, 20 high-mass protostellar objects, 11 hot molecular cores and 9 ultra-compact Hii regions in the (3-2) transitions of the four deuterated molecules, DCN, DNC, DCO+, and N2D+ as well as their non-deuterated counterparts. The overall detection fraction of DCN, DNC, and DCO+ is high and exceeds 50% for most of the stages. N2D+ was only detected in a few infrared dark clouds and high-mass protostellar objects. This may be related to problems in the bandpass at the transition frequency and to low abundances in the more evolved, warmer stages. We find median D/H ratios of 0.02 for DCN, 0.005 for DNC, 0.0025 for DCO+, and 0.02 for N2D+. While the D/H ratios of DNC, DCO+, and N2D+ decrease with time, DCN/HCN peaks at the hot molecular core stage. We only found weak correlations of the D/H ratios for N2D+ with the luminosity of the central source and the FWHM of the line, and no correlation with the H2 column density. In combination with a previously observed set of 14 other molecules (Paper I), we fitted the calculated column densities with an elaborate 1D physico-chemical model with time-dependent D-chemistry including ortho- and para-H2 states. Good overall fits to the observed data were obtained with the model. This is one of the first times that observations and modeling were combined to derive chemically based best-fit models for the evolution of high-mass star formation including deuteration. Appendix A is available in electronic form at http://www.aanda.org

  17. A convenient synthesis of deuterated leukotriene A sub 4 methyl ester

    Energy Technology Data Exchange (ETDEWEB)

    Bestmann, H.J.; Roeder, T. (Erlangen-Nuernberg Univ., Erlangen (Germany, F.R.). Inst. fuer Organische Chemie); Meese, C.O. (Fischer-Bosch-Inst. fuer Klinische Pharmakologie, Stuttgart (Germany, F.R.))

    1989-11-01

    2,2,3,3-({sup 2}H{sub 4})-1-Iodopentane was prepared in four steps from propargyl alcohol and used in the C-alkylation of the THP-protected 3-butyne-1-ol. Subsequent protective group removal, semi-deuteration of the acetylenic alcohol and further transformation by known methods afforded the labelled key reagent 3,4,6,6,7,7-({sup 2}H{sub 6})-(Z)-(3-nonen-1-yl)triphenylphosphonium iodide. Wittig olefination of epoxy dienal with the ylide generated from the latter completed the convenient synthesis of hexadeuterated leukotriene A{sub 4} methyl ester. (author).

  18. Partially-deuterated samples of HET-s(218–289) fibrils: assignment and deuterium isotope effect

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Albert A.; Ravotti, Francesco; Testori, Emilie; Cadalbert, Riccardo; Ernst, Matthias, E-mail: maer@ethz.ch [ETH Zürich, Physical Chemistry (Switzerland); Böckmann, Anja, E-mail: a.bockmann@ibcp.fr [Institut de Biologie et Chimie des Protéines, Bases Moléculaires et Structurales des Systèmes Infectieux, Labex Ecofect, UMR 5086 CNRS, Université de Lyon (France); Meier, Beat H., E-mail: beme@ethz.ch [ETH Zürich, Physical Chemistry (Switzerland)

    2017-02-15

    Fast magic-angle spinning and partial sample deuteration allows direct detection of {sup 1}H in solid-state NMR, yielding significant gains in mass sensitivity. In order to further analyze the spectra, {sup 1}H detection requires assignment of the {sup 1}H resonances. In this work, resonance assignments of backbone H{sup N} and Hα are presented for HET-s(218–289) fibrils, based on the existing assignment of Cα, Cβ, C’, and N resonances. The samples used are partially deuterated for higher spectral resolution, and the shifts in resonance frequencies of Cα and Cβ due to the deuterium isotope effect are investigated. It is shown that the deuterium isotope effect can be estimated and used for assigning resonances of deuterated samples in solid-state NMR, based on known resonances of the protonated protein.

  19. Deuterium Fractionation upon the Formation of Hexamethylenetetramines through Photochemical Reactions of Interstellar Ice Analogs Containing Deuterated Methanol Isotopologues

    Science.gov (United States)

    Oba, Yasuhiro; Takano, Yoshinori; Naraoka, Hiroshi; Kouchi, Akira; Watanabe, Naoki

    2017-11-01

    Hexamethylenetetramine (HMT) is a representative product after the photolysis of interstellar ice analogs containing methanol followed by warming-up to room temperature. Since interstellar methanol is often significantly enriched in deuterium (D), the HMT photoproduct is expected to inherit D atoms from deuterated methanol. However, D fractionation upon the formation of HMT is not well understood, especially when it is produced from partly deuterated methanol isotopologues such as CH2DOH and CH3OD. Here, we experimentally studied the composition of deuterated HMT (d n -HMT, where n is the number of D atoms) at the isotopologue level formed by the photolysis of ice mixtures containing deuterated methanol, CH2DOH or CH3OD, at 10 or 77 K. The analyses were performed using a state-of-the-art high-resolution mass spectrometer coupled with a compound-specific separation technique. The formation of d n -HMT (n = 0-8) was confirmed under all experimental conditions. In addition, methyl- and hydroxyl-substituted HMT and their deuterated isotopologues were also obtained in the products. The deuterium enrichment was outstanding when CH2DOH was used rather than CH3OD, and when photolysis was performed at 77 K rather than 10 K. We found that the deuteration level of the formed HMT far exceeded that of the reactants under the present experimental conditions. These results obtained during stable isotope probing of deuterium strongly suggest that HMT can play a role as an organic pool of interstellar D atoms. These may be distributed into other chemical species through molecular evolution in space.

  20. Isotopic fractionation of fentanyl and its deuterated analogues by capillary gas chromatography

    International Nuclear Information System (INIS)

    Sera, Shoji; Goromaru, Tsuyoshi

    1997-01-01

    Isotopic fractionation of fentanyl (FT) and its deuterated analogues by gas chromatography using capillary columns (CBP1 and CBP5) has been investigated. Seven kinds of analogues were labeled with 5 to 19 deuterium atoms at the anilino, propionyl and/or phenylethyl group of FT. The retention times of deuterated FT in CBP1 and CBP5 columns are inversely proportional to the number of labeled deuterium atoms in the molecule. The difference in free enegy changes (ΔΔG) had a linear relationship with the number of labeled deuterium atoms, except for labeling at anilino and phenylethyl group. The contribution of a deuterium atom to the ΔΔG value was estimated to be 1.13 cal/mol in CBP1 and 1.40 cal/mol in CBP5, respectively. While, its contribution in the propiony group was 2.84 cal/mol in CBP1 and 2.48 cal/mol in CBP5, respectively. An important factor in separation by GC may differences in interactions between the stationary phase of the column with the three dimensional protrusive moiety in the molecule. (author)

  1. Isotopic fractionation of fentanyl and its deuterated analogues by capillary gas chromatography

    Energy Technology Data Exchange (ETDEWEB)

    Sera, Shoji; Goromaru, Tsuyoshi [Fukuyama Univ., Hiroshima (Japan)

    1997-12-01

    Isotopic fractionation of fentanyl (FT) and its deuterated analogues by gas chromatography using capillary columns (CBP1 and CBP5) has been investigated. Seven kinds of analogues were labeled with 5 to 19 deuterium atoms at the anilino, propionyl and/or phenylethyl group of FT. The retention times of deuterated FT in CBP1 and CBP5 columns are inversely proportional to the number of labeled deuterium atoms in the molecule. The difference in free enegy changes ({Delta}{Delta}G) had a linear relationship with the number of labeled deuterium atoms, except for labeling at anilino and phenylethyl group. The contribution of a deuterium atom to the {Delta}{Delta}G value was estimated to be 1.13 cal/mol in CBP1 and 1.40 cal/mol in CBP5, respectively. While, its contribution in the propiony group was 2.84 cal/mol in CBP1 and 2.48 cal/mol in CBP5, respectively. An important factor in separation by GC may differences in interactions between the stationary phase of the column with the three dimensional protrusive moiety in the molecule. (author)

  2. Study of deuterated water in the low-mass protostar IRAS16293-2422

    Science.gov (United States)

    Coutens, A.; Vastel, C.; Caux, E.; Ceccarelli, C.; Herschel Chess Team

    2011-05-01

    Observations of deuterated water are an important complement for studies of H2O, since they give strong constraints on the formation processes: grain surfaces versus gas-phase chemistry through energetic process as shocks. The CHESS (Chemical HErschel Surveys of Star forming regions) Key Program has allowed to detect a lot of transitions of HDO (8) and H2O (16) as well as its isotopes H_218O and H_217O towards the low-mass protostar IRAS16293-2422 thanks to the unbiaised spectral survey carried out with the HIFI instrument on board the Herschel Space Observatory. Complementary data of HDO from the ground-based telescopes IRAM and JCMT are also available, allowing a precise determination of the abundance of deuterated water through the protostar envelope. In order to reproduce the observed line profiles, we have performed a modeling of HDO from the hot corino through the envelope using the physical structure of the protostar (Crimier et al. 2010) and the spherical Monte Carlo radiative transfer code RATRAN, which takes also into account radiative pumping by continuum emission from dust. We have used new HDO collision rates with H_2, recently computed by Wiesenfeld, Scribano and Faure (2011, PCCP). The same method has been applied to model H_2O and its isotopes H_218O and H_217O. We will present the results of this analysis and discuss the determined abundances.

  3. Synthesis of specifically deuterated ceramide [AP]-C18 and its biophysical characterization using neutron diffraction.

    Science.gov (United States)

    Sonnenberger, Stefan; Eichner, Adina; Hauß, Thomas; Schroeter, Annett; Neubert, Reinhard H H; Dobner, Bodo

    2017-04-01

    The very heterogeneous group of ceramides is known to be mandatory for proper barrier functions of the outermost layer of mammalian skin, referred to as stratum corneum (SC). The synthesis of a specifically deuterated ceramide [AP]-C18 variant is described. The synthesized ceramide contains the racemic forms of the α hydroxy fatty acid. For the biophysical implementation, the received diastereomeric ceramide was applied in a neutron diffraction experiment. Therefore, a SC lipid model membrane was prepared containing the described ceramide (CER), cholesterol (CHOL), stearic acid (SA), and cholesterol sulfate (ChS) in a ratio of 55/25/15/5wt%. Thus, we were able to localize the deuterated molecule part within the bilayers. In the process, a short-periodicity phase (SPP) was observed with a unit cell scale of about 44Å. For the first time, we were able to confirm former ideas concerning the arrangement of the CER within this quaternary lipid model membrane. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K

    International Nuclear Information System (INIS)

    Chatake, Toshiyuki; Ishikawa, Takuya; Yanagisawa, Yasuhide; Yamada, Taro; Tanaka, Ichiro; Fujiwara, Satoru; Morimoro, Yukio

    2011-01-01

    A high-resolution X-ray crystallographic study of the effects of solvent deuteration on the crystallization of proteinase K shows negligibly small degradations of the crystals owing to solvent deuteration and small structural differences between nondeuterated and deuterated crystals of proteinase K. Deuteration of macromolecules is an important technique in neutron protein crystallography. Solvent deuteration of protein crystals is carried out by replacing water (H 2 O) with heavy water (D 2 O) prior to neutron diffraction experiments in order to diminish background noise. The effects of solvent deuteration on the crystallization of proteinase K (PK) with polyethylene glycol as a precipitant were investigated using high-resolution X-ray crystallography. In previous studies, eight NO 3 − anions were included in the PK crystal unit cell grown in NaNO 3 solution. In this study, however, the PK crystal structure did not contain NO 3 − anions; consequently, distortions of amino acids arising from the presence of NO 3 − anions were avoided in the present crystal structures. High-resolution (1.1 Å) X-ray diffraction studies showed that the degradation of PK crystals induced by solvent deuteration was so small that this degradation would be negligible for the purpose of neutron protein crystallography experiments at medium resolution. Comparison of the nonhydrogen structures of nondeuterated and deuterated crystal structures demonstrated very small structural differences. Moreover, a positive correlation between the root-mean-squared differences and B factors indicated that no systematic difference existed

  5. Synthesis of the metabolite of the insecticide Deltamethrine: deuterated and tritiated 5-hydroxy-3-phenoxybenzyl alcohol and its 5-methoxy derivative

    International Nuclear Information System (INIS)

    Do-cao-thang; Nguyen-hoang-nam; Nguyen-ngoc-quang; Hoellinger, H.

    1988-01-01

    Partial hydrolysis of LiBH 4 with deuterated, tritiated water in THF solution provided a simple and cheap method for the preparation of deuterated, tritiated alcohols by reduction of esters : (α - 2 H) and (α - 3 H) 5-methoxy-3-phenoxybenzyl alcohol, 5-hydroxy 3-phenoxybenzyl alcohol (metabolite of deltamethrin), the pyrethroid insecticide. (author)

  6. FTIR Study of Metal Zeolites. Determination of Co(II) Cation in Co-BETA Zeolite by Deuterated Acetonitrile Adsorption

    Czech Academy of Sciences Publication Activity Database

    Kuriyavar, S.; Bortnovsky, Oleg; Tvarůžková, Zdenka; Sobalík, Zdeněk

    2001-01-01

    Roč. 66, č. 4 (2001), s. 685-692 ISSN 0010-0765 R&D Projects: GA AV ČR IBS4040016 Institutional research plan: CEZ:AV0Z4040901 Keywords : deuterated acetonitrile * cobalt * zeolites Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 0.778, year: 2001

  7. Unraveling the surface formation of regular and deuterated water in space : a combined laboratory and computational study

    NARCIS (Netherlands)

    Lamberts, Agneta Luciana Matthanja (Thanja)

    2015-01-01

    This thesis is devoted to the study of regular and deuterated water in ices and on surfaces against an interstellar background. A large network for the formation of regular water has been studied with the use of a Kinetic Monte Carlo model. A specific reaction has been investigated as well: H2 + O

  8. Simultaneous determination of the intermediates of the citric acid cycle by gas chromatography--mass fragmentography using deuterated internal standards

    International Nuclear Information System (INIS)

    Lee, C.R.; Pollitt, R.J.

    1977-01-01

    Current developments in the use of gas chromatography and mass spectroscopy in studying the intermediates in the Krebs tricarboxylic acid cycle are outlined. The methods developed make use of deuterated internal standards and multiple-ion monitoring to obtain sensitivity comparable to that of the better fluorimetric enzymatic assays. The problems still remaining are indicated

  9. Cp2TiCl/D2O/Mn, a formidable reagent for the deuteration of organic compounds

    Directory of Open Access Journals (Sweden)

    Antonio Rosales

    2016-07-01

    Full Text Available Cp2TiCl/D2O/Mn is an efficient combination, sustainable and cheap reagent that mediates the D-atom transfer from D2O to different functional groups and can contribute to the synthesis of new deuterated organic compounds under friendly experimental conditions and with great economic advantages.

  10. Introducing the Precision Isotope Ratio Mass Spectrometer: Novel Innovations in Multi-Collector Arrays for Isotopologues and Isotopomers in Organic Molecule Gas Analysis

    Science.gov (United States)

    Kasson, A.

    2016-12-01

    In January 2016, elementar Analysensysteme, GmbH (Germany), in conjunction with their daughter company, Isoprime Ltd. (United Kingdom) released the Precision isotope ratio mass spectrometer. The Precision is the newest light element IRMS on the market and adds some unique hardware and software functionalities to the basic core of stable isotopic research previously unseen. Although this system is designed to make the typical bulk and compound specific measurements that functioning stable isotope laboratories have been accustomed to, it has been designed to make complicated measurements of isotopologues, isotopomers and clumped isotopes much more turnkey and user friendly. Here we focus on some datasets that have been collected from three different beta test sites and highlight the functional use of the new hardware in conjunction with ionOS operating software. As part of those highlights, the improved precision, accuracy and ion optics of the Precision IRMS will be demonstrated. In addition, we intend to show that the reprocessing functions on the ionOS software package are not only beneficial to users of just the Precision IRMS, but to the entire stable isotope community as a whole.

  11. Reactions of Deuterated Methanol (CD3OD) on Fe3O4(111)

    Energy Technology Data Exchange (ETDEWEB)

    Li, Zhisheng; Potapenko, Denis V.; Rim, Kwang T.; Flytzani-Stephanopoulos, Maria; Flynn, George; Osgood, Richard; Wen, Xiaodong; Batista, Enrique R.

    2015-01-15

    We report an experimental and theoretical investigation of the decomposition (partial oxidation) of deuterated methanol (CD3OD) on a single-crystal Fe3O4(111) surface. The crystal surface contains majority areas of a Fe-terminated Fe3O4(111) surface as well as smaller regions of O-terminated FeO(111) or biphase surface reconstruction. Our investigation uses a combination of scanning tunneling microscopy, temperature-programmed desorption, and density functional theory calculations to examine the surface reactions and adsorbates as a function of coverage. Our studies show that the reaction of methanol on this iron–oxide surface is highly sensitive to atomic-level surface reconstructions

  12. Chemical shift assignments of the partially deuterated Fyn SH2-SH3 domain.

    Science.gov (United States)

    Kieken, Fabien; Loth, Karine; van Nuland, Nico; Tompa, Peter; Lenaerts, Tom

    2018-04-01

    Src Homology 2 and 3 (SH2 and SH3) are two key protein interaction modules involved in regulating the activity of many proteins such as tyrosine kinases and phosphatases by respective recognition of phosphotyrosine and proline-rich regions. In the Src family kinases, the inactive state of the protein is the direct result of the interaction of the SH2 and the SH3 domain with intra-molecular regions, leading to a closed structure incompetent with substrate modification. Here, we report the 1 H, 15 N and 13 C backbone- and side-chain chemical shift assignments of the partially deuterated Fyn SH3-SH2 domain and structural differences between tandem and single domains. The BMRB accession number is 27165.

  13. Water deuteration in star-forming regions: Contribution of Herschel/HIFI spectroscopic data

    International Nuclear Information System (INIS)

    Coutens, Audrey

    2012-01-01

    Water (H 2 O) is one of the most abundant molecules in the interstellar medium. In addition to being a primordial ingredient in the emergence of life, this species plays an essential role in the process of star formation through the cooling of warm gas. It also controls the chemistry for many species, either in the gas phase or on the grain surfaces. Studying its deuterated form HDO is a unique opportunity, through the estimation of the HDO/H 2 O ratio, to constrain the mechanisms of water formation and to better understand the origin of water contained in terrestrial oceans. Indeed, recent results obtained with the Herschel satellite show that the HDO/H 2 O ratio observed in comets is similar to the value measured in oceans (∼1.5 10 -4 ), which suggests that comets could have brought a large fraction to Earth to form the oceans during heavy bombardments (Hartogh et al. 2011). In this thesis, I was interested in the study of deuterated water in the first stages of star formation, the Class 0 stage, which precede the formation of the protoplanetary disk leading to the birth of comets and planets. Through a 1D non-Local Thermodynamic Equilibrium radiative transfer modeling of the line profiles of the numerous HDO and H 2 18 O transitions detected with the HIFI (Heterodyne Instrument for Far-Infrared) instrument onboard the Herschel Space Observatory and ground-based telescopes (IRAM, JCMT), I determined that the HDO/H 2 O ratios of the solar-type protostar IRAS 16293-2422 was about 2% in the hot corino, the inner part of the protostellar envelope sufficiently warm (T ≥ 100 K) to desorb in gas phase the water molecules trapped in the icy grain mantles, and about 0.5% in the colder part of the envelope. This study (Coutens et al. 2012) also allowed me to show that an absorbing layer rich in water surrounds the protostar. This layer could be produced by the photo-desorption through the UV field of the water molecules frozen on the grains, on the edges of the

  14. Observations of the contracting dense core ahead of HH 80N using deuterated species

    Science.gov (United States)

    Masqué, Josep-Maria; Beltran, Maite; Girart, Josep Miquel; Estalella, Robert

    2008-04-01

    HH 80N is the northern counterpart of the brightest Herbig-Haro objects known, HH 80-81. A massive (~ 20 M_sun) and large (~ 0.2) dense clump was found ahead of HH 80N. This core appears to be contracting at supersonic infall velocities and it harbors a very young protostar which is powering a bipolar outflow. Observations of several molecular species reveals an interesting complex cheistry within the core, which may be caused by the UV photons coming from HH 80N. All thses features make this region an interesting target to study. We propose to observe several deuterated species as a probes for the high density gas, in order to understand this peculiar core

  15. Intense deuterium nuclear fusion of pycnodeuterium-lumps coagulated locally within highly deuterated atom clusters

    CERN Document Server

    Yoshiaki, A; Zhang, Y C

    2002-01-01

    Embedded nano-Pd particles of 5 nm in size instantly abundant D-atoms more than 250% in the atomic ratio against Pd-atoms at room temperature when they are kept in D sub 2 gas pressurized to less than 10 atm. In such ultrahigh densities, 2-4 D-atoms can be coagulated inside each octahedral space of Pd lattice (pycnodeuterium-lump). When a stimulation energy such as latticequake causing by ultrasonic wave was supplied to those highly deuterated Pd particles, intense deuterium nuclear fusion (''solid fusion'') was generated there and both excess heat and sup 4 He gas were abundantly produced. Naturally, these facts can not be realized at all in bulk Pd. The results show that the nuclear fusion occurs without any hazardous rays in pycnodeuterium-lumps coagulated locally inside the each cell of the host metal lattice. These unit cells correspond to minimum unit of the solid fusion reactor as a ''Lattice Reactor''. (author)

  16. Observations of Deuterated Species toward Low-Mass Prestellar and Protostellar Cores

    Science.gov (United States)

    Nishimura, Y.; Sakai, N.; Watanabe, Y.; Sakai, T.; Hirota, T.; Yamamoto, S.

    2013-10-01

    We have conducted observations of the ground-state transition lines (J = 1-0) of the fundamental deuterated species DCO+, DNC, DCN, CCD and N2D+ as well as those of H13CO+, HN13C, H13CN, CCH and N2H+ with the Nobeyama 45 m telescope. The target sources are the cold starless cores, TMC-1 and Lupus-1A, and the low-mass star forming cores, L1527 and IRAS15398-3359. The excitation temperatures derived from intensities of resolved hyperfine components are systematically different between DNC and HN13C. On the other hand, the excitation temperatures of DCN and H13CN are comparable to each other. Although the origin of these results is puzzling, the present result indicates that accurate evaluation of the excitation temperature is essential for deriving deuterium fractionation ratios accurately.

  17. Neutronic measurements on electrolytic cells with deuterated palladium in a submarine environment

    International Nuclear Information System (INIS)

    Granada, J.R.; Mayer, R.E.; Florido, P.C.; Gillette, V.H.; Gomez, S.E.

    1990-01-01

    Using a high efficiency system for the neutron thermal detection and a pulsed electrolytic current procedure, measurements were made on cells containing Pd cathodes and electrolytes at a D 2 O and H 2 O base. The peculiarity of these experiments is that they were carried out on board of the A.R.A. Santa Cruz submarine, at a depth of 50m under sea level, attaining ultra deep-down conditions in the measurements, corresponding to a reduction in a factor = 50 in relation to lab conditions. The mean level of the signal -obtained from counting combination of deuterated cathodes- results to be separated from the deep-down level by four standard deviations. (Author) [es

  18. Crystal structures and phase transformation of deuterated lithium imide, Li2ND

    International Nuclear Information System (INIS)

    Balogh, Michael P.; Jones, Camille Y.; Herbst, J.F.; Hector, Louis G.; Kundrat, Matthew

    2006-01-01

    We have investigated the crystal structure of deuterated lithium imide, Li 2 ND, by means of neutron and X-ray diffraction. An order-disorder transition occurs near 360K. Below that temperature Li 2 ND can be described to the same level of accuracy as a disordered cubic (Fd3-bar m) structure with partially occupied Li 32e sites or as a fully occupied orthorhombic (Ima2 or Imm2) structure. The high temperature phase is best characterized as disordered cubic (Fm3-bar m) with D atoms randomized over the 192l sites. Density functional theory calculations complement and support the diffraction analyses. We compare our findings in detail with previous studies

  19. Effect of N-methyl deuteration on metabolism and pharmacokinetics of enzalutamide

    Directory of Open Access Journals (Sweden)

    Jiang J

    2016-07-01

    Full Text Available Jinfang Jiang,1,2,* Xuehai Pang,2,3,* Liang Li,1,2 Xiaojian Dai,1,2 Xingxing Diao,1 Xiaoyan Chen,1,2 Dafang Zhong,1,2 Yingwei Wang,2,3 Yuanwei Chen2–4 1State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 2University of Chinese Academy of Sciences, Beijing, 3Chengdu Institute of Organic Chemistry, Chinese Academy of Sciences, 4Hinova Pharmaceuticals Inc, Chengdu, People’s Republic of China *These authors contributed equally to this work Background: The replacement of hydrogen with deuterium invokes a kinetic isotope effect. Thus, this method is an attractive way to slow down the metabolic rate and modulate pharmacokinetics.Purpose: Enzalutamide (ENT acts as a competitive inhibitor of the androgen receptor and has been approved for the treatment of metastatic castration-resistant prostate cancer by the US Food and Drug Administration in 2012. To attenuate the N-demethylation pathway, hydrogen atoms of the N–CH3 moiety were replaced by the relatively stable isotope deuterium, which showed similar pharmacological activities but exhibited favorable pharmacokinetic properties.Methods: We estimated in vitro and in vivo pharmacokinetic parameters for ENT and its deuterated analog (d3-ENT. For in vitro studies, intrinsic primary isotope effects (KH/KD were determined by the ratio of intrinsic clearance (CLint obtained for ENT and d3-ENT. The CLint values were obtained by the substrate depletion method. For in vivo studies, ENT and d3-ENT were orally given to male Sprague Dawley rats separately and simultaneously to assess the disposition and metabolism of them. We also investigated the main metabolic pathway of ENT by comparing the rate of oxidation and hydrolysis in vitro. Results: The in vitro CLint (maximum velocity/Michaelis constant [Vmax/Km] of d3-ENT in rat and human liver microsomes were 49.7% and 72.9% lower than those of the non-deuterated compound, corresponding to the KH

  20. Dynamics of hydration water in deuterated purple membranes explored by neutron scattering.

    Science.gov (United States)

    Wood, K; Plazanet, M; Gabel, F; Kessler, B; Oesterhelt, D; Zaccai, G; Weik, M

    2008-06-01

    The function and dynamics of proteins depend on their direct environment, and much evidence has pointed to a strong coupling between water and protein motions. Recently however, neutron scattering measurements on deuterated and natural-abundance purple membrane (PM), hydrated in H2O and D2O, respectively, revealed that membrane and water motions on the ns-ps time scale are not directly coupled below 260 K (Wood et al. in Proc Natl Acad Sci USA 104:18049-18054, 2007). In the initial study, samples with a high level of hydration were measured. Here, we have measured the dynamics of PM and water separately, at a low-hydration level corresponding to the first layer of hydration water only. As in the case of the higher hydration samples previously studied, the dynamics of PM and water display different temperature dependencies, with a transition in the hydration water at 200 K not triggering a transition in the membrane at the same temperature. Furthermore, neutron diffraction experiments were carried out to monitor the lamellar spacing of a flash-cooled deuterated PM stack hydrated in H2O as a function of temperature. At 200 K, a sudden decrease in lamellar spacing indicated the onset of long-range translational water diffusion in the second hydration layer as has already been observed on flash-cooled natural-abundance PM stacks hydrated in D2O (Weik et al. in J Mol Biol 275:632-634, 2005), excluding thus a notable isotope effect. Our results reinforce the notion that membrane-protein dynamics may be less strongly coupled to hydration water motions than the dynamics of soluble proteins.

  1. Product analysis during the thermo-oxidation of amorphous deuterated hydrocarbon films with NO2

    Directory of Open Access Journals (Sweden)

    D. Alegre

    2015-12-01

    Full Text Available The excellent thermo-oxidation properties of NO2 have been previously reported, pointing to fast carbon co-deposits removal even at temperatures as low as 200 °C. On the other hand, CO, CO2 and water have been found as the main gas products in oxidation by O2, but in NO2 they have not been confirmed. To make a more accurate assessment, the use of in-situ deposited deuterated hydrocarbon films—to be able to distinguish products from ambient, protonated ones—in a fully-baked chamber have been used in the present work, mainly aimed at detecting heavy (deuterated water among the reaction products. Other products from hydrogen isotopes could not be identified, but their production would be much lower than water. The ratio of the total deuterium to carbon products detected is lower by an order of magnitude than the D/C ratio of the film (0.04–0.07 to 0.4, probably associated to the difficulties of measuring water in a vacuum system, and the relatively large quantity of background water found. Furthermore, post-oxidation of CO to CO2 has been found for NO2 at any studied temperature, while for O2 a faster post-oxidation which only occurs at T > 275 °C was found. Finally, the implications of the water production in the use of thermo-oxidation in actual and future nuclear fusion devices are also addressed.

  2. Correlation between the structure and infra-red absorption characteristics of mono-deuterated compounds: contribution to the study of organo-magnesium compounds

    International Nuclear Information System (INIS)

    Paillous, A.

    1965-10-01

    The high sensitivity of the ν (C-D) vibration to the variations brought about by the substitution of the carbon attached to the deuterium is shown in the case of organic or organo-metallic mono-deuterated molecules. In particular, syntheses of various mono-deuterated organo-magnesium compounds have been carried out; results are given concerning an infra-red spectrometric examination of these compounds in the range 2100 - 2250 cm -1 . The results show the existence of only one type of deuterated carbon, which suggests that the same carbanion is involved in various ionic associations for the different magnesium-containing compounds. (authors) [fr

  3. TEM and EELS study of deuterated carbon: application to the fuel retention in tokamaks; Etude couplee MET-EELS du carbone deutere: application a la retention du combustible dans les tokamaks

    Energy Technology Data Exchange (ETDEWEB)

    Bernier, N

    2007-12-15

    We developed a methodology, based on the combination of TEM and EELS techniques, for a structural and chemical characterization, at a high spatial resolution, of a wide range of carbon materials. We i) optimized, in the framework of theoretical models, the sp2 fraction quantification from pure carbons by EELS ii) transferred this quantification to deuterated amorphous carbon layers iii) showed, from graphitized carbons, how the TEM-EELS combination allows to detect low concentrations of implanted D. Due to the accomplishment of these developments, we applied our approach to the study of D retention in composites C/C, which are the plasma-facing materials in TS. We showed that specific localized retention sites correspond to relatively large ({approx} 3 mm.) cracks between fibres and matrix; such cracks offer a simple and direct path for deuterated amorphous carbon. The particle balance performed in TS is discussed in the light of this trapping mechanism. (author)

  4. Deuteration and evolution in the massive star formation process. The role of surface chemistry

    Science.gov (United States)

    Fontani, F.; Busquet, G.; Palau, Aina; Caselli, P.; Sánchez-Monge, Á.; Tan, J. C.; Audard, M.

    2015-03-01

    Context. An ever growing number of observational and theoretical evidence suggests that the deuterated fraction (column density ratio between a species containing D and its hydrogenated counterpart, Dfrac) is an evolutionary indicator both in the low- and the high-mass star formation process. However, the role of surface chemistry in these studies has not been quantified from an observational point of view. Aims: Because many abundant species, such as NH3, H2CO, and CH3OH, are actively produced on ice mantles of dust grains during the early cold phases, their Dfrac is expected to evolve differently from species formed only (or predominantly) in the gas, such as N2H+, HNC, HCN, and their deuterated isotopologues. The differences are expected to be relevant especially after the protostellar birth, in which the temperature rises, causing the evaporation of ice mantles. Methods: To compare how the deuterated fractions of species formed only in the gas and partially or uniquely on grain surfaces evolve with time, we observed rotational transitions of CH3OH, 13CH3OH, CH2DOH, and CH3OD at 3 mm and 1.3 mm, of NH2D at 3 mm with the IRAM-30 m telescope, and the inversion transitions (1, 1) and (2, 2) of NH3 with the GBT, towards most of the cores already observed in N2H+, N2D+, HNC, and DNC. Results: NH2D is detected in all but two cores, regardless of the evolutionary stage. Dfrac(NH3) is on average above 0.1 and does not change significantly from the earliest to the most evolved phases, although the highest average value is found in the protostellar phase (~0.3). Few lines of CH2DOH and CH3OD are clearly detected, and then only towards protostellar cores or externally heated starless cores. In quiescent starless cores, we have only one doubtful detection of CH2DOH. Conclusions: This work clearly confirms an expected different evolutionary trend of the species formed exclusively in the gas (N2D+ and N2H+) and those formed partially (NH2D and NH3) or totally (CH2DOH and CH3

  5. VizieR Online Data Catalog: Deuteration in massive star formation process (Fontani+, 2015)

    Science.gov (United States)

    Fontani, F.; Busquet, G.; Palau, A.; Caselli, P. Sanchez-Monge A.; Tan, J. C.; Audard, M.

    2014-11-01

    An ever growing number of observational and theoretical evidence suggests that the deuterated fraction (column density ratio between a species containing D and its hydrogenated counterpart, Dfrac) is an evolutionary indicator both in the low- and the high-mass star formation process. However, the role of surface chemistry in these studies has not been quantified from an observational point of view. In order to compare how the deuterated fractions of species formed only in the gas and partially or uniquely on grain surfaces evolve with time, we observed rotational transitions of CH3OH, 13CH3OH, CH2DOH, CH3OD at 3 and 1.3mm, and of NH2D at 3mm with the IRAM-30m telescope, and the inversion transitions (1,1) and (2,2) of NH3 with the GBT, towards most of the cores already observed by Fontani et al. (2011A&A...529L...7F, 2014MNRAS.440..448F) in N2H+, N2D+, HNC, DNC. NH2D is detected in all but two cores, regardless of the evolutionary stage. Dfrac(NH3) is on average above 0.1, and does not change significantly from the earliest to the most evolved phases, although the highest average value is found in the protostellar phase (~0.3). Few lines of CH2DOH and CH3OD are clearly detected, and only towards protostellar cores or externally heated starless cores. This work clearly confirms an expected different evolutionary trend of the species formed exclusively in the gas (N2D+ and N2H+) and those formed partially (NH2D and NH3) or totally (CH2DOH and CH3OH) on grain mantles. The study also reinforces the idea that Dfrac(N2H+) is the best tracer of massive starless cores, while high values of Dfrac(CH3OH) seem rather good tracers of the early protostellar phases, at which the evaporation/sputtering of the grain mantles is most efficient. (6 data files).

  6. Deuteration Can Impact Micellization Pressure and Cloud Pressure of Polystyrene-block-polybutadiene and Polystyrene-block-polyisoprene in Compressible Propane

    Energy Technology Data Exchange (ETDEWEB)

    Winoto, Winoto [University of Wyoming, Laramie; Shen, Youqin [University of Wyoming, Laramie; Radosz, Maciej [University of Wyoming, Laramie; Hong, Kunlun [ORNL; Mays, Jimmy [ORNL

    2009-01-01

    The deuterated homopolymers and their corresponding polystyrene-block-polybutadiene and polystyrene-block-polyisoprene copolymers require lower cloud pressures than their hydrogenous analogues to dissolve in a compressible alkane solvent, such as propane. For symmetric diblocks, deuteration reduces the micellization pressure. By contrast, for asymmetric diblocks with a long diene block relative to the styrene block, deuteration can increase the micellization pressure. All in all, however, the deuteration effects, while measurable, do not qualitatively change the principal diblock properties in compressible propane solutions, such as pressure-induced micelle decomposition, micelle formation and micelle size, and their temperature dependence. Therefore, isotope labeling should be a useful approach to neutron-scattering characterization for styrene-diene block copolymers in compressible alkane systems.

  7. Tritium aging effect of LaNi4.9Al0.1Dx on de-deuterating kinetics

    International Nuclear Information System (INIS)

    Xiong Yifu; Luo Deli; Li Rong

    2002-01-01

    Kinetics parameters are measured at different aging times of LaNi 4.9 Al 0.1 alloy. The influence of tritium aging on kinetic feature of LaNi 4.9 Al 0.1 alloy is assessed. The results show that reaction rate decreases with aging time, but tritium aging does not change de-deuterating reaction order. De-deuterating reaction orders a (with respect to deuterium pressure) and b (with respect to deuterium content) are 0.5 and 1, respectively. Activation energy (E) increases with aging time. After 1120 d, the reaction rate constant is decreased by two orders of magnitude, activation energy is increased by a factor of 0.3

  8. Static structure factor of polymerlike micelles: Overall dimension, flexibility, and local properties of lecithin reverse micelles in deuterated isooctane

    DEFF Research Database (Denmark)

    Jerke, G.; Pedersen, J.S.; Egelhaaf, S.U.

    1997-01-01

    We report a systematic investigation of the static structure factor S(q,c) of polymerlike reverse micelles formed by soybean lecithin and trace amounts of water in deuterated isooctane using small-angle neutron scattering and static light scattering. The experimental data for different concentrat......We report a systematic investigation of the static structure factor S(q,c) of polymerlike reverse micelles formed by soybean lecithin and trace amounts of water in deuterated isooctane using small-angle neutron scattering and static light scattering. The experimental data for different...... transformation and square-root deconvolution techniques. We demonstrate that we can determine structural properties such as the micellar cross-section profile and flexibility as well as quantitatively incorporate the influence of micellar growth and excluded-volume effects on S(q,c)....

  9. Hydrogen/deuterium exchange of cross-linkable α-amino acid derivatives in deuterated triflic acid.

    Science.gov (United States)

    Wang, Lei; Murai, Yuta; Yoshida, Takuma; Okamoto, Masashi; Masuda, Katsuyoshi; Sakihama, Yasuko; Hashidoko, Yasuyuki; Hatanaka, Yasumaru; Hashimoto, Makoto

    2014-01-01

    In this paper we report here a hydrogen/deuterium exchange (H/D exchange) of cross-linkable α-amino acid derivatives with deuterated trifluoromethanesulfonic acid (TfOD). H/D exchange with TfOD was easily applied to o-catechol containing phenylalanine (DOPA) within an hour. A partial H/D exchange was observed for trifluoromethyldiazirinyl (TFMD) phenylalanine derivatives. N-Acetyl-protected natural aromatic α-amino acids (Tyr and Trp) were more effective in H/D exchange than unprotected ones. The N-acetylated TFMD phenylalanine derivative afforded slightly higher H/D exchange than unprotected derivatives. An effective post-deuteration method for cross-linkable α-amino acid derivatives will be useful for the analysis of biological functions of bioactive peptides and proteins by mass spectrometry.

  10. Deuterium isotope effects on drug pharmacokinetics. I. System-dependent effects of specific deuteration with aldehyde oxidase cleared drugs.

    Science.gov (United States)

    Sharma, Raman; Strelevitz, Timothy J; Gao, Hongying; Clark, Alan J; Schildknegt, Klaas; Obach, R Scott; Ripp, Sharon L; Spracklin, Douglas K; Tremaine, Larry M; Vaz, Alfin D N

    2012-03-01

    The pharmacokinetic properties of drugs may be altered by kinetic deuterium isotope effects. With specifically deuterated model substrates and drugs metabolized by aldehyde oxidase, we demonstrate how knowledge of the enzyme's reaction mechanism, species differences in the role played by other enzymes in a drug's metabolic clearance, and differences in systemic clearance mechanisms are critically important for the pharmacokinetic application of deuterium isotope effects. Ex vivo methods to project the in vivo outcome using deuterated carbazeran and zoniporide with hepatic systems demonstrate the importance of establishing the extent to which other metabolic enzymes contribute to the metabolic clearance mechanism. Differences in pharmacokinetic outcomes in guinea pig and rat, with the same metabolic clearance mechanism, show how species differences in the systemic clearance mechanism can affect the in vivo outcome. Overall, to gain from the application of deuteration as a strategy to alter drug pharmacokinetics, these studies demonstrate the importance of understanding the systemic clearance mechanism and knowing the identity of the metabolic enzymes involved, the extent to which they contribute to metabolic clearance, and the extent to which metabolism contributes to the systemic clearance.

  11. Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation

    Science.gov (United States)

    Lindner, Robert; Lou, Xinghua; Reinstein, Jochen; Shoeman, Robert L.; Hamprecht, Fred A.; Winkler, Andreas

    2014-06-01

    Hydrogen-deuterium exchange (HDX) experiments analyzed by mass spectrometry (MS) provide information about the dynamics and the solvent accessibility of protein backbone amide hydrogen atoms. Continuous improvement of MS instrumentation has contributed to the increasing popularity of this method; however, comprehensive automated data analysis is only beginning to mature. We present Hexicon 2, an automated pipeline for data analysis and visualization based on the previously published program Hexicon (Lou et al. 2010). Hexicon 2 employs the sensitive NITPICK peak detection algorithm of its predecessor in a divide-and-conquer strategy and adds new features, such as chromatogram alignment and improved peptide sequence assignment. The unique feature of deuteration distribution estimation was retained in Hexicon 2 and improved using an iterative deconvolution algorithm that is robust even to noisy data. In addition, Hexicon 2 provides a data browser that facilitates quality control and provides convenient access to common data visualization tasks. Analysis of a benchmark dataset demonstrates superior performance of Hexicon 2 compared with its predecessor in terms of deuteration centroid recovery and deuteration distribution estimation. Hexicon 2 greatly reduces data analysis time compared with manual analysis, whereas the increased number of peptides provides redundant coverage of the entire protein sequence. Hexicon 2 is a standalone application available free of charge under http://hx2.mpimf-heidelberg.mpg.de.

  12. Preparation and infrared spectra of differently deuterated tetramethyl-derivatives of the IV. main group

    International Nuclear Information System (INIS)

    Biedermann, S.

    1972-01-01

    19 different deuterated tetramethyl derivates of the type (CH 3 )sub(4-n)M(CH 3 )sub(n) of C, Si, Ge, Sn and Pb were prepared. Gas cuvettes with polyethylene, NaCl and KBr windows were used to absorb the infra-red spectra, the IR equipment Beckman IR 11 and IR 12 were used. The infra-red spectra of the above mentioned compounds were indicated from 33 to 4,000 cm -1 , the ground, upper and combination vibrations assigned, the PR separations of the partly well resolved rotation-vibration outlines determined and were compared with the calculated PR separations. The revision of the correlations performed by Graham for γsub(s)CH 3 and γsub(as)CH 3 in the race of vibration F 2 with Sn(CH 3 ) 4 and Pb(CH 3 ) 4 and the proposed one with C(CH 3 ) 4 , Si(CH 3 ) 4 and Ge(CH 3 ) 4 could be disproved by the new experimental results. (FW) [de

  13. Dynamic characterization of crystalline and glass phases of deuterated 1,1,2,2 tetrachloroethane

    Energy Technology Data Exchange (ETDEWEB)

    Pérez, Silvina C., E-mail: clyde@famaf.unc.edu.ar; Zuriaga, Mariano, E-mail: zuriaga@famaf.unc.edu.ar; Serra, Pablo, E-mail: serra@famaf.unc.edu.ar; Wolfenson, Alberto, E-mail: wolf@famaf.unc.edu.ar [Facultad de Matemática, Astronomía y Física, Universidad Nacional de Córdoba and IFEG-CONICET, Ciudad Universitaria, X5016LAE Córdoba (Argentina); Negrier, Philippe, E-mail: philippe.negrier@u-bordeaux.fr [Université Bordeaux, LOMA, UMR 5798, F-33400 Talence, France and LOMA, UMR 5798, F-33400 Talence (France); Tamarit, Josep Lluis, E-mail: josep.lluis.tamarit@upc.edu [Grup de Caracterització de Materials, Departament de Física i Enginyeria Nuclear, ETSEIB, Diagonal 647, Universitat Politècnica de Catalunya, 08028 Barcelona, Catalonia (Spain)

    2015-10-07

    A thorough characterization of the γ, β, and glass phases of deuterated 1,1,2,2 tetrachloroethane (C{sub 2}D{sub 2}Cl{sub 4}) via nuclear quadrupole resonance and Molecular Dynamic Simulations (MDSs) is reported. The presence of molecular reorientations was experimentally observed in the glass phase and in the β phase. In the β phase, and from MDS, these reorientations are attributed to two possible movements, i.e., a 180°  reorientation around the C{sub 2} molecular symmetry axis and a reorientation of the molecule between two non-equivalent positions. In the glass phase, the spin-lattice relaxation time T{sub 1} is of the order of 16 times lower than in the crystalline phase and varies as T{sup −1} below 100 K in good agreement with the strong quadrupolar relaxation observed in amorphous materials and in the glassy state of molecular organic systems. The activation energy of molecular reorientations in the glass phase (19 kJ/mol) is comparable to that observed in the glassy crystal of a “molecular cousin” compound, Freon 112 (C{sub 2}F{sub 2}Cl{sub 4}), for the secondary β-relaxation. Moreover, the on-site orientational motion of tetrachloroethane molecules offers a new indirect evidence of the prominent role of such orientational disorder in glassy dynamics.

  14. Pharmacokinetics of methadone during maintenance therapy: Pulse labeling with deuterated methadone in the steady state

    International Nuclear Information System (INIS)

    Aenggard, E.; Nilsson, M.I.; Holmstrand, J.; Gunne, L.M.; Uppsala Univ.; Karolinsky Institutet, Stockholm

    1979-01-01

    A technique is presented for study of steady state kinetics of methadone using pulse labeling with deuterated methadone (d 3 ) and mass fragmentography to measure both unlabeled and labeled methadone in blood. Seven subjects maintained on methadone for at least 10 months were admitted to a closed metabolic ward. The daily dose of unlabeled methadone (d 0 ) was substituted by one dose of methadone-d 3 and plasma levels of methadone-d 0 and methadone-d 3 were followed for 48 h using a precise (SD +- 5%) and sensitive (30 pmol/ml) mass fragmentographic technique. Plasma half-lives (tsub(1/2)) for both methadone-d 0 and methadone-d 3 were calculated from samples obtained 8-24 h following the dose of methadone-d 3 . The tsub(1/2) of oral methadone-d 3 was shorter (22 +- 2 h) than that of methadone-d 0 (52 +- 20 h). The same pattern was observed after intravenous administration. The results indicate multiple pools of methadone in the body. (orig.) 891 AJ/orig. 892 MKO [de

  15. Using deuterated PAH amendments to validate chemical extraction methods to predict PAH bioavailability in soils

    Energy Technology Data Exchange (ETDEWEB)

    Gomez-Eyles, Jose L., E-mail: j.l.gomezeyles@reading.ac.uk [University of Reading, School of Human and Environmental Sciences, Soil Research Centre, Reading, RG6 6DW Berkshire (United Kingdom); Collins, Chris D.; Hodson, Mark E. [University of Reading, School of Human and Environmental Sciences, Soil Research Centre, Reading, RG6 6DW Berkshire (United Kingdom)

    2011-04-15

    Validating chemical methods to predict bioavailable fractions of polycyclic aromatic hydrocarbons (PAHs) by comparison with accumulation bioassays is problematic. Concentrations accumulated in soil organisms not only depend on the bioavailable fraction but also on contaminant properties. A historically contaminated soil was freshly spiked with deuterated PAHs (dPAHs). dPAHs have a similar fate to their respective undeuterated analogues, so chemical methods that give good indications of bioavailability should extract the fresh more readily available dPAHs and historic more recalcitrant PAHs in similar proportions to those in which they are accumulated in the tissues of test organisms. Cyclodextrin and butanol extractions predicted the bioavailable fraction for earthworms (Eisenia fetida) and plants (Lolium multiflorum) better than the exhaustive extraction. The PAHs accumulated by earthworms had a larger dPAH:PAH ratio than that predicted by chemical methods. The isotope ratio method described here provides an effective way of evaluating other chemical methods to predict bioavailability. - Research highlights: > Isotope ratios can be used to evaluate chemical methods to predict bioavailability. > Chemical methods predicted bioavailability better than exhaustive extractions. > Bioavailability to earthworms was still far from that predicted by chemical methods. - A novel method using isotope ratios to assess the ability of chemical methods to predict PAH bioavailability to soil biota.

  16. Development of new synthetic routes to bile pigments and synthesis of deuterated porphyrins

    International Nuclear Information System (INIS)

    Shim, Y.K.

    1985-01-01

    New synthetic routes to pyrromethanones using hydrogen peroxide/pyridine upon alpha-free pyrromethanes and a synthesis of mesobiliverdin are described. The pyrromethanones were applied to the synthesis of mesobiliverdin using 2,3-dichloro-5,6-dicyanobenzoquinone (DDQ) oxidation of mesourbilin, to give a high yield of the desired mesobiliverdin. New synthetic methodology to pyrrolinones using various oxidizing reagents were also described. Treatment of alpha-free pyrrole with thallium(III) trifluoroacetate (TTFA) gave a mixture of a pyrrolinone and a dimeric compound. The yield and the ratio of the two products were variable depending upon the solvents and the mole ratio of the TTFA used. Pyrrolinone syntheses using the other oxidizing reagents are also described. Syntheses of carbon-14 labelled biliverdins are also described. In addition, the preparation of biliverdin IX-BETA using b-bilene route is described. The second part of this study contains an introduction to porphyrins and syntheses of 6,7-bis(2-methoxycarbonyl-1,1-dideuteroethyl)-1,3,5,8-tetramethyl-2,4-divinylporphyrin. The latter is important in the study of heme protein reconstitution experiments. As a result of numerous synthetic approaches the desired product was obtained from the appropriately deuterated formylpyrrole using the a,c-biladiene route

  17. Synthesis of the deuterated sex pheromone components of the grape borer, Xylotrechus pyrrhoderus.

    Science.gov (United States)

    Kiyota, Ryutaro; Yamakawa, Rei; Iwabuchi, Kikuo; Hoshino, Keita; Ando, Tetsu

    2009-10-01

    Adult males of the grape borer, Xylotrechus pyrrhoderus, secrete (S)-2-hydroxy-3-octanone [(S)-1] and (2S,3S)-2,3-octanediol [(2S,3S)-2] from their nota of prothoraces as sex pheromone components. Their structural similarity suggests that one of them is the biosynthetic precursor of the other component. In order to confirm the biochemical conversion, deuterated derivatives of both components were synthesized by starting from a Wittig reaction between hexanal and an ylide derived from D(5)-iodoethane and ending with enantiomeric resolution by chiral HPLC. The molecular ions of 1 and 2 could scarcely be detected by using a GC-MS analysis, and the labeled compounds showed similar mass spectra to the unlabeled pheromone components. However, several fragment ions, including four deuterium atoms, were observed in the mass spectra of their acetate derivatives, indicating that the conversion could be confirmed by examining a compound with the diagnostic ions after acetylation of the volatiles collected from insects treated with the labeled precursors.

  18. Production, crystallization and neutron diffraction of fully deuterated human myelin peripheral membrane protein P2.

    Science.gov (United States)

    Laulumaa, Saara; Blakeley, Matthew P; Raasakka, Arne; Moulin, Martine; Härtlein, Michael; Kursula, Petri

    2015-11-01

    The molecular details of the formation of the myelin sheath, a multilayered membrane in the nervous system, are to a large extent unknown. P2 is a peripheral membrane protein from peripheral nervous system myelin, which is believed to play a role in this process. X-ray crystallographic studies and complementary experiments have provided information on the structure-function relationships in P2. In this study, a fully deuterated sample of human P2 was produced. Crystals that were large enough for neutron diffraction were grown by a ten-month procedure of feeding, and neutron diffraction data were collected to a resolution of 2.4 Å from a crystal of 0.09 mm(3) in volume. The neutron crystal structure will allow the positions of H atoms in P2 and its fatty-acid ligand to be visualized, as well as shedding light on the fine details of the hydrogen-bonding networks within the P2 ligand-binding cavity.

  19. Tracing the atomic nitrogen abundance in star-forming regions with ammonia deuteration

    Science.gov (United States)

    Furuya, Kenji; Persson, Magnus V.

    2018-03-01

    Partitioning of elemental nitrogen in star-forming regions is not well constrained. Most nitrogen is expected to be partitioned among atomic nitrogen (N I), molecular nitrogen (N2), and icy N-bearing molecules, such as NH3 and N2. N I is not directly observable in the cold gas. In this paper, we propose an indirect way to constrain the amount of N I in the cold gas of star-forming clouds, via deuteration in ammonia ice, the [ND2H/NH2D]/[NH2D/NH3] ratio. Using gas-ice astrochemical simulations, we show that if atomic nitrogen remains as the primary reservoir of nitrogen during cold ice formation stages, the [ND2H/NH2D]/[NH2D/NH3] ratio is close to the statistical value of 1/3 and lower than unity, whereas if atomic nitrogen is largely converted into N-bearing molecules, the ratio should be larger than unity. Observability of ammonia isotopologues in the inner hot regions around low-mass protostars, where ammonia ice has sublimated, is also discussed. We conclude that the [ND2H/NH2D]/[NH2D/NH3] ratio can be quantified using a combination of VLA and ALMA observations with reasonable integration times, at least toward IRAS 16293-2422 where high molecular column densities are expected.

  20. An optimized method for (15)N R(1) relaxation rate measurements in non-deuterated proteins.

    Science.gov (United States)

    Gairí, Margarida; Dyachenko, Andrey; González, M Teresa; Feliz, Miguel; Pons, Miquel; Giralt, Ernest

    2015-06-01

    (15)N longitudinal relaxation rates are extensively used for the characterization of protein dynamics; however, their accurate measurement is hindered by systematic errors. (15)N CSA/(1)H-(15)N dipolar cross-correlated relaxation (CC) and amide proton exchange saturation transfer from water protons are the two main sources of systematic errors in the determination of (15)N R1 rates through (1)H-(15)N HSQC-based experiments. CC is usually suppressed through a train of 180° proton pulses applied during the variable (15)N relaxation period (T), which can perturb water magnetization. Thus CC cancellation is required in such a way as to minimize water saturation effects. Here we examined the level of water saturation during the T period caused by various types of inversion proton pulses to suppress CC: (I) amide-selective IBURP-2; (II) cosine-modulated IBURP-2; (III) Watergate-like blocks; and (IV) non-selective hard. We additionally demonstrate the effect of uncontrolled saturation of aliphatic protons on (15)N R1 rates. In this paper we present an optimized pulse sequence that takes into account the crucial effect of controlling also the saturation of the aliphatic protons during (15)N R1 measurements in non-deuterated proteins. We show that using cosine-modulated IBURP-2 pulses spaced 40 ms to cancel CC in this optimized pulse program is the method of choice to minimize systematic errors coming from water and aliphatic protons saturation effects.

  1. The use of deuterated ethyl acetate in highly concentrated electrolyte as a low-cost solvent for in situ neutron diffraction measurements of Li-ion battery electrodes

    International Nuclear Information System (INIS)

    Petibon, R.; Li, Jing; Sharma, Neeraj; Pang, Wei Kong; Peterson, Vanessa K.; Dahn, J.R.

    2015-01-01

    A low-cost deuterated electrolyte suitable for in situ neutron diffraction measurements of normal and high voltage Li-ion battery electrodes is reported here. Li[Ni 0.4 Mn 0.4 Co 0.2 ]O 2 /graphite (NMC(442)/graphite) pouch cells filled with 1:0.1:2 (molar ratio) of lithium bis(fluorosulfonyl) imide (LiFSi):LiPF 6 : ethyl acetate (EA) and LiFSi:LiPF 6 :deuterated EA (d8-EA) electrolytes were successfully cycled between 2.8 V and 4.7 V at 40°C for 250 h without significant capacity loss, polarization growth, or gas production. The signal-to-noise ratio of neutron powder diffraction patterns taken on NMC(442) powder with a conventional deuterated organic carbonate-based electrolyte and filled with LiFSi:LiPF 6 :d8-EA electrolyte were virtually identical. Out of all the solvents widely available in deuterated form tested in highly-concentrated systems, EA was the only one providing a good balance between cost and charge-discharge capacity retention to 4.7 V. The use of such an electrolyte blend would half the cost of deuterated solvents needed for in situ neutron diffraction measurements of Li-ion batteries compared to conventional deuterated carbonate-based electrolytes

  2. Low-frequency ESR studies on permeable and impermeable deuterated nitroxyl radicals in corn oil solution.

    Science.gov (United States)

    David Jebaraj, D; Utsumi, Hideo; Milton Franklin Benial, A

    2018-04-01

    Low-frequency electron spin resonance studies were performed for 2 mM concentration of deuterated permeable and impermeable nitroxyl spin probes, 3-methoxycarbonyl-2,2,5,5-tetramethyl-pyrrolidine-1-oxyl and 3-carboxy-2,2,5,5,-tetramethyl-1-pyrrolidinyloxy in pure water and various concentrations of corn oil solution. The electron spin resonance parameters such as the line width, hyperfine coupling constant, g factor, rotational correlation time, permeability, and partition parameter were estimated. The broadening of line width was observed for nitroxyl radicals in corn oil mixture. The rotational correlation time increases with increasing concentration of corn oil, which indicates the less mobile nature of spin probe in corn oil mixture. The membrane permeability and partition parameter values were estimated as a function of corn oil concentration, which reveals that the nitroxyl radicals permeate equally into the aqueous phase and oil phase at the corn oil concentration of 50%. The electron spin resonance spectra demonstrate the permeable and impermeable nature of nitroxyl spin probes. From these results, the corn oil concentration was optimized as 50% for phantom studies. In this work, the corn oil and pure water mixture phantom models with various viscosities correspond to plasma membrane, and whole blood membrane with different hematocrit levels was studied for monitoring the biological characteristics and their interactions with permeable nitroxyl spin probe. These results will be useful for the development of electron spin resonance and Overhauser-enhanced magnetic resonance imaging modalities in biomedical applications. Copyright © 2017 John Wiley & Sons, Ltd.

  3. Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices

    DEFF Research Database (Denmark)

    Schmidt, Karsten; Carlsen, Morten; Nielsen, Jens Bredal

    1997-01-01

    has been implemented that describes label distribution in primary carbon metabolism, i.e., in a metabolic network including the Embden-Meyerhof-Parnas and pentose phosphate pathway, the tricarboxylic acid cycle, and selected anaplerotic reaction sequences. The model calculates the steady state label......Within the last decades NMR spectroscopy has undergone tremendous development and has become a powerful analytical tool for the investigation of intracellular flux distributions in biochemical networks using C-13-labeled substrates. Not only are the experiments much easier to conduct than...... experiments employing radioactive tracer elements, but NMR spectroscopy also provides additional information on the labeling pattern of the metabolites. Whereas the maximum amount of information obtainable with C-14-labeled substrates is the fractional enrichment in the individual carbon atom positions, NMR...

  4. Residue-specific membrane location of peptides and proteins using specifically and extensively deuterated lipids and {sup 13}C-{sup 2}H rotational-echo double-resonance solid-state NMR

    Energy Technology Data Exchange (ETDEWEB)

    Xie Li; Ghosh, Ujjayini; Schmick, Scott D.; Weliky, David P., E-mail: weliky@chemistry.msu.edu [Michigan State University, Department of Chemistry (United States)

    2013-01-15

    Residue-specific location of peptides in the hydrophobic core of membranes was examined using {sup 13}C-{sup 2}H REDOR and samples in which the lipids were selectively deuterated. The transmembrane topology of the KALP peptide was validated with this approach with substantial dephasing observed for deuteration in the bilayer center and reduced or no dephasing for deuteration closer to the headgroups. Insertion of {beta} sheet HIV and helical and {beta} sheet influenza virus fusion peptides into the hydrophobic core of the membrane was validated in samples with extensively deuterated lipids.

  5. Conversion of 3, 4-dihydroxyphenylalanine and deuterated 3, 4-dihydroxyphenylalanine to alcoholic metabolites of catecholamines in rat brain

    Energy Technology Data Exchange (ETDEWEB)

    Edwards, D.J.; Rizk, M.

    1981-05-01

    We have investigated the effects of 3, 4-dihydroxyphenylalanine (L-DOPA) and its deuterated analogue on the concentrations of alcoholic metabolites of catecholamines in rat brain by means of gas chromatography/mass spectrometry with selected-ion monitoring. Whole brain concentrations of the two neutral norepinephrine metabolites, 3-methoxy-4-hydroxyphenylethyleneglycol (MHPG) and 3, 4-dihydroxyphenylethyleneglycol (DHPG), were significantly increased in a dose-dependent manner by a single intraperitoneal injection of L-DOPA. Both MHPG and DHPG, as well as the corresponding dopamine metabolites, reached a maximum 1 h after injection. Brain MHPG and DHPG concentrations were elevated by 78 and 134% respectively, 1 h after injection of 150 mg/kg L-DOPA. Analyses of discrete brain regions revealed that concentrations of the norepinephrine metabolites were elevated uniformly in all regions, except that MHPG showed a greater increase in the cerebellum than in other regions. The latter result appeared to be explained by the finding that 52% of the total MHPG in the cerebellum was unconjugated (compared to 15% in the whole brain). L-DOPA caused a proportionately greater increase in free MHPG than in total MHPG in the cerebellum and brain stem. By using deuterated L-DOPA in place of L-DOPA and measuring both the deuterated and nondeuterated norepinephrine metabolites, reseachers demonstrated that virtually all of the increases in MHPG and DHPG were due to the conversion of the exogenous L-DOPA to norepinephrine. Thus, the effects of norepinephrine metabolism need to be considered in attempts to understand clinical and behavioral effects of L-DOPA.

  6. High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K.

    Science.gov (United States)

    Chatake, Toshiyuki; Ishikawa, Takuya; Yanagisawa, Yasuhide; Yamada, Taro; Tanaka, Ichiro; Fujiwara, Satoru; Morimoro, Yukio

    2011-11-01

    Deuteration of macromolecules is an important technique in neutron protein crystallography. Solvent deuteration of protein crystals is carried out by replacing water (H(2)O) with heavy water (D(2)O) prior to neutron diffraction experiments in order to diminish background noise. The effects of solvent deuteration on the crystallization of proteinase K (PK) with polyethylene glycol as a precipitant were investigated using high-resolution X-ray crystallography. In previous studies, eight NO(3)(-) anions were included in the PK crystal unit cell grown in NaNO(3) solution. In this study, however, the PK crystal structure did not contain NO(3)(-) anions; consequently, distortions of amino acids arising from the presence of NO(3)(-) anions were avoided in the present crystal structures. High-resolution (1.1 Å) X-ray diffraction studies showed that the degradation of PK crystals induced by solvent deuteration was so small that this degradation would be negligible for the purpose of neutron protein crystallography experiments at medium resolution. Comparison of the nonhydrogen structures of nondeuterated and deuterated crystal structures demonstrated very small structural differences. Moreover, a positive correlation between the root-mean-squared differences and B factors indicated that no systematic difference existed. © 2011 International Union of Crystallography. All rights reserved.

  7. Continuous-Flow Synthesis of Deuterium-Labeled Antidiabetic Chalcones: Studies towards the Selective Deuteration of the Alkynone Core

    Directory of Open Access Journals (Sweden)

    Sándor B. Ötvös

    2016-03-01

    Full Text Available Flow chemistry-based syntheses of deuterium-labeled analogs of important antidiabetic chalcones were achieved via highly controlled partial C≡C bond deuteration of the corresponding 1,3-diphenylalkynones. The benefits of a scalable continuous process in combination with on-demand electrolytic D2 gas generation were exploited to suppress undesired over-reactions and to maximize reaction rates simultaneously. The novel deuterium-containing chalcone derivatives may have interesting biological effects and improved metabolic properties as compared with the parent compounds.

  8. The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data

    Directory of Open Access Journals (Sweden)

    Tsinoremas NF

    2007-05-01

    Full Text Available Abstract Background The combination of mass spectrometry and solution phase amide hydrogen/deuterium exchange (H/D exchange experiments is an effective method for characterizing protein dynamics, and protein-protein or protein-ligand interactions. Despite methodological advancements and improvements in instrumentation and automation, data analysis and display remains a tedious process. The factors that contribute to this bottleneck are the large number of data points produced in a typical experiment, each requiring manual curation and validation, and then calculation of the level of backbone amide exchange. Tools have become available that address some of these issues, but lack sufficient integration, functionality, and accessibility required to address the needs of the H/D exchange community. To date there is no software for the analysis of H/D exchange data that comprehensively addresses these issues. Results We have developed an integrated software system for the automated analysis and representation of H/D exchange data that has been titled "The Deuterator". Novel approaches have been implemented that enable high throughput analysis, automated determination of deuterium incorporation, and deconvolution of overlapping peptides. This has been achieved by using methods involving iterative theoretical envelope fitting, and consideration of peak data within expected m/z ranges. Existing common file formats have been leveraged to allow compatibility with the output from the myriad of MS instrument platforms and peptide sequence database search engines. A web-based interface is used to integrate the components of The Deuterator that are able to analyze and present mass spectral data from instruments with varying resolving powers. The results, if necessary, can then be confirmed, adjusted, re-calculated and saved. Additional tools synchronize the curated calculation parameters with replicate time points, increasing throughput. Saved results can then

  9. Reactions of tritium atoms with amino acids, deuterated amino acids and mixtures of amino acids. Additivity property and isotope effect

    International Nuclear Information System (INIS)

    Badun, G.A.; Filatov, Eh.S.

    1988-01-01

    Interaction of tritium atoms with glycine (1) and leucine (2) amino acids, deuterated amino acids, their mixtures and glycylleucine (3) peptide in the 77-300 K temperature range is studied in isothermal and gradient regimes. Tagged amino acids were separated from targets after conducting the reaction. At T 150 K are associated with intermolecular transmission of free valence in the mixture of amino acids. Regularities of the reaction found for the mixture of amino acids are conserved for (3) as well, i.e. the peptide bond does not essentially affect the reaction of isotopic exchange conditioned by atomic tritium

  10. Mechanistic studies of catalytic hydrogenation: gas tritiation and deuteration of 2-acetamidoacrylic acid and alpha-acetamidocinnamic acid

    International Nuclear Information System (INIS)

    Tang, Y.S.; Morimoto, H.; Un, S.; Rapoport, H.

    1986-01-01

    The difference of labeling in heterogeneous catalytic gas tritiations of 2-acetamidocinnamic acid and 2-acetamidoacrylic acid is demonstrated by 3 H NMR spectroscopy. The nonequivalent addition of tritium to the double bond of 2-acetamidoacrylic acid is due to simultaneous hydrogen-tritium exchange during adsorption on the catalyst surface. A new mechanistic interpretation has been proposed to explain the behavior of this substrate. These conclusions were substantiated by mass spectrometry results obtained using D 2 and deuterated solvents. Steric effects on vinylic exchange studied by GLRC were also reported. 2 refs.; 6 figs.; 3 tabs

  11. Analytical data of synthesized deuterated isopropyl myristate and data about the influence of IPM/IPMdeut on the thermodynamics and morphology of 2D Stratum Corneum models

    Directory of Open Access Journals (Sweden)

    J.S.L. Oliveira

    2017-06-01

    Full Text Available The data in this article shows the effect of isopropyl myristate (IPM on a 2D Stratum Corneum lipid model. In the first part, the analytical characterization of the synthesized deuterated isopropyl myristate is given. Then a BAM image of the pure Stratum Corneum model used is shown and a dataset of surface-pressure – area isotherms considering various ratios of deuterated and non-deuterated IPM and the Stratum Corneum model mixture is provided. Assuming that after the plateau in the isotherm the area per molecule corresponds only to the Stratum Corneum model (squeezing out of IPM, the value of the area will correspond to the percentage of these lipids in the mixture when considering the pure SC model. The comparison of the real and the calculated areas per molecule is also done.

  12. New deuterated oligo(ethylene glycol) building blocks and their use in the preparation of surface active lipids possessing labeled hydrophilic tethers.

    Science.gov (United States)

    Faragher, Robert J; Schwan, Adrian L

    2008-02-15

    For the introduction of additional analysis protocols of tethered molecules, a method is presented to prepare functionalized, deuterated oligo(ethylene glycols) from ethylene glycol-d4. Partial oligomerization of ethylene glycol-d4 and conversion to ditosylates is accompanied by coupling reactions to prepare doubly benzyl protected oligo(ethylene glycols) with two to five repeating units. The tetramer bearing 16 deuteria was elaborated at both ends to eventually prepare 2,3-di-O-phytanyl-sn-glycerol-1-tetraethylene glycol-d,l-alpha-lipoic acid ester (DPTL), which bears a fully deuterated tetra(ethylene glycol) spacer group. Through linking of functionalized components, an analogue of DPTL possessing an octa(ethylene glycol) spacer group was prepared, both in deuterated and unlabeled form.

  13. Growth, structural, thermal and optical studies of deuterated L-Arginine phosphate (dLAP) single crystals

    International Nuclear Information System (INIS)

    Haja Hameed, A.S.; Ravi, G.; Nixon Azariaha, A.; Ramasamy, P.

    2001-01-01

    L-arginine phosphate (LAP) and deuterated L-arginine phosphate(dLAP) are promising non linear optical materials having good non linear coefficient, high damage threshold and less hygroscopic nature as compared to potassium dihydrogen phosphate (KDP). Due to the significant absorptions in the near infrared in the pure LAP, its deuterated analog (dLAP) crystals have been grown. The presence of deuterium in dLAP shifts this absorption by 3%. This crystals are grown from the solvent of heavy water (D 2 O) by slow cooling method. The growth conditions for the growth of monoclinic dLAP crystals are optimized by adjusting the growth parameters, such as pH, temperature etc. The grown crystals are morphologically compared with the pure LAP crystals. The variation of lattice parameters of dLAP crystal with pure LAP is found from the X-ray powder diffraction studies. The thermal behaviour and molecular vibrations of dLAP are reported from DT and TG and FTIR studies. (author)

  14. Syntheses of deuterated leu-enkephalins and their use as internal standards for the quantification of leu-enkephalin by fast atom bombardment mass spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Benfenati, E. (Istituto di Ricerche Farmacologiche Mario Negri, Bergamo (Italy) Istituto di Ricerche Farmacologiche Mario Negri, Milan (Italy)); Icardi, G.; Chen, S. (Istituto di Ricerche Farmacologiche Mario Negri, Bergamo (Italy)); Fanelli, R. (Istituto di Ricerche Farmacologiche Mario Negri, Milan (Italy))

    1990-04-01

    We have developed a synthetic method for the preparation of di- and pentadeuterated leu-enkephalin (LE), Tyr-Gly-Gly-Phe-Leu, by proton-deuterium exchange using CF[sub 3]COOO[sup 2]H. Four to six deuterium atoms are introduced using a reaction temperature of 120[sup o]C and if 5% of [sup 2]H[sub 2]O is added the di-deuterated LE is obtained. These deuterated compounds are used as internal standards to plot calibration curves of LE using fast atom bombardment mass spectrometry. (author).

  15. Crystal Structure of the Sodium Cobaltate Deuterate Superconductor NaxCoO2o4xD2O (x=1/3)

    OpenAIRE

    Jorgensen, J. D.; Avdeev, M.; Hinks, D. G.; Burley, J. C.; Short, S.

    2003-01-01

    Neutron and x-ray powder diffraction have been used to investigate the crystal structures of a sample of the newly-discovered superconducting sodium cobaltate deuterate compound with composition Na0.31(3)CoO2o1.25(2)D2O and its anhydrous parent compound Na0.61(1)CoO2. The deuterate superconducting compound is formed by coordinating four D2O molecules (two above and two below) to each Na ion in a way that gives Na-O distances nearly equal to those in the parent compound. One deuteron of the D2...

  16. Quantitative imaging of water flow in soil and roots using neutron radiography and deuterated water

    International Nuclear Information System (INIS)

    Zarebanadkouki, Mohsen

    2013-01-01

    Where and how fast do roots take up water? Despite its importance in plant and soil sciences, there is limited experimental information on the location of water uptake along the roots of transpiring plants growing in soil. The answer to this question requires direct and in-situ measurement of the local flow of water into the roots. The aim of this study was to develop and apply a new method to quantify the local fluxes of water into different segments of the roots of intact plants. To this end, neutron radiography was used to trace the transport of deuterated water (D 2 O) into the roots of lupines. Lupines were grown in aluminum containers filled with sandy soil. The soil was partitioned into different compartments using 1 cm-thick layers of coarse sand as capillary barriers. These barriers limited the diffusion of D 2 O within the soil compartments. D 2 O was locally injected into the selected soil compartments during the day (transpiring plants) and night (non-transpiring plants). Transport of D 2 O into roots was then monitored by neutron radiography with spatial resolution of 100 μm and time intervals of 10 seconds. Neutron radiographs showed that: i) transport of D 2 O into roots was faster during the day than during the night; 2) D 2 O quickly moved along the roots towards the shoots during the day, while at night this axial transport was negligible. The differences between day and night measurements were explained by convective transport of D 2 O into the roots. To quantify the net flow of water into roots, a simple convection-diffusion model was developed, where the increase rate of D 2 O concentration in roots depended on the convective transport (net root water uptake) and the diffusion of D 2 O into roots. The results showed that water uptake was not uniform along the roots. Water uptake was higher in the upper soil layers than in the deeper ones. Along an individual roots, the water uptake rate was higher in the proximal segments than in the distal

  17. Hydrogen exchange during cell-free incorporation of deuterated amino acids and an approach to its inhibition

    Energy Technology Data Exchange (ETDEWEB)

    Tonelli, Marco; Singarapu, Kiran K. [University of Wisconsin-Madison, National Magnetic Resonance Facility at Madison (NMRFAM), Department of Biochemistry (United States); Makino, Shin-ichi; Sahu, Sarata C.; Matsubara, Yuko [University of Wisconsin-Madison, Center for Eukaryotic Structural Genomics (CESG), Department of Biochemistry (United States); Endo, Yaeta [Ehime University, Cell-Free Science and Technology Research Center (Japan); Kainosho, Masatsune [Tokyo Metropolitan University, Center for Priority Areas (Japan); Markley, John L., E-mail: markley@nmrfam.wisc.edu [University of Wisconsin-Madison, National Magnetic Resonance Facility at Madison (NMRFAM), Department of Biochemistry (United States)

    2011-12-15

    Perdeuteration, selective deuteration, and stereo array isotope labeling (SAIL) are valuable strategies for NMR studies of larger proteins and membrane proteins. To minimize scrambling of the label, it is best to use cell-free methods to prepare selectively labeled proteins. However, when proteins are prepared from deuterated amino acids by cell-free translation in H{sub 2}O, exchange reactions can lead to contamination of {sup 2}H sites by {sup 1}H from the solvent. Examination of a sample of SAIL-chlorella ubiquitin prepared by Escherichia coli cell-free synthesis revealed that exchange had occurred at several residues (mainly at Gly, Ala, Asp, Asn, Glu, and Gln). We present results from a study aimed at identifying the exchanging sites and level of exchange and at testing a strategy for minimizing {sup 1}H contamination during wheat germ cell-free translation of proteins produced from deuterated amino acids by adding known inhibitors of transaminases (1 mM aminooxyacetic acid) and glutamate synthetase (0.1 mM l-methionine sulfoximine). By using a wheat germ cell-free expression system, we produced [U-{sup 2}H, {sup 15}N]-chlorella ubiquitin without and with added inhibitors, and [U-{sup 15}N]-chlorella ubiquitin as a reference to determine the extent of deuterium incorporation. We also prepared a sample of [U-{sup 13}C, {sup 15}N]-chlorella ubiquitin, for use in assigning the sites of exchange. The added inhibitors did not reduce the protein yield and were successful in blocking hydrogen exchange at C{sup {alpha}} sites, with the exception of Gly, and at C{sup {beta}} sites of Ala. We discovered, in addition, that partial exchange occurred with or without the inhibitors at certain side-chain methyl and methylene groups: Asn-H{sup {beta}}, Asp-H{sup {beta}}, Gln-H{sup {gamma}}, Glu-H{sup {gamma}}, and Lys-H{sup {epsilon}}. The side-chain labeling pattern, in particular the mixed chiral labeling resulting from partial exchange at certain sites, should be of

  18. The ALMA-PILS Survey: Formaldehyde deuteration in warm gas on small scales toward IRAS 16293-2422 B

    Science.gov (United States)

    Persson, M. V.; Jørgensen, J. K.; Müller, H. S. P.; Coutens, A.; van Dishoeck, E. F.; Taquet, V.; Calcutt, H.; van der Wiel, M. H. D.; Bourke, T. L.; Wampfler, S. F.

    2018-02-01

    Context. The enhanced degrees of deuterium fractionation observed in envelopes around protostars demonstrate the importance of chemistry at low temperatures, relevant in pre- and protostellar cores. Formaldehyde is an important species in the formation of methanol and more complex molecules. Aims: Here, we aim to present the first study of formaldehyde deuteration on small scales around the prototypical low-mass protostar IRAS 16293-2422 using high spatial and spectral resolution Atacama Large Millimeter/submillimeter Array (ALMA) observations. We determine the excitation temperature, abundances and fractionation level of several formaldehyde isotopologues, including its deuterated forms. Methods: Excitation temperature and column densities of formaldehyde in the gas close to one of the components of the binary were constrained through modeling of optically thin lines assuming local thermodynamical equilibrium. The abundance ratios were compared to results from previous single dish observations, astrochemical models and local ISM values. Results: Numerous isotopologues of formaldehyde are detected, among them H2C17O, and D213CO for the first time in the ISM. The large range of upper energy levels covered by the HDCO lines help constrain the excitation temperature to 106 ± 13 K. Using the derived column densities, formaldehyde shows a deuterium fractionation of HDCO/H2CO = 6.5 ± 1%, D2CO/HDCO = 12.8-4.1+3.3%, and D2CO/H2CO = 0.6(4) ± 0.1%. The isotopic ratios derived are 16O/18O = 805-79+43, 18O/17O = 3.2-0.3+0.2, and 12C/13C = 56-11+8. Conclusions: The HDCO/H2CO ratio is lower than that found in previous studies, highlighting the uncertainties involved in interpreting single dish observations of the inner warm regions. The D2CO/HDCO ratio is only slightly larger than the HDCO/H2CO ratio. This is consistent with formaldehyde forming in the ice as soon as CO has frozen onto the grains, with most of the deuteration happening toward the end of the prestellar core

  19. Synthesis of 3 alpha-deuterated 7 alpha-hydroxy-DHEA and 7-oxo-DHEA and application in LC-MS/MS plasma analysis

    Czech Academy of Sciences Publication Activity Database

    Sosvorova, L.K.; Sarek, J.; Vitku, J.; Kvasnica, Miroslav

    2016-01-01

    Roč. 112, AUG (2016), s. 88-94 ISSN 0039-128X Institutional support: RVO:61389030 Keywords : 7 alpha-Hydroxy-DHEA * 7-Oxo-DHEA * Deuterated standard Subject RIV: CE - Biochemistry Impact factor: 2.282, year: 2016

  20. Straightforward synthesis of 2,2,4,4,5,7,7-d{sub 7}-cholestane: a new deuterated standard in petroleum analysis

    Energy Technology Data Exchange (ETDEWEB)

    Miranda, Maicon Guerra de; Albert, Andre Luis Mazzei; Cardoso, Jari Nobrega; Lopes, Rosangela Sabbatini Capella; Lopes, Claudio Cerqueira, E-mail: maicon_iq@yahoo.com [Universidade Federal do Rio de Janeiro (UFRJ), RJ (Brazil). Inst. de Quimica

    2013-10-01

    A short and efficient synthesis of heptadeuterated 2,2,4,4,5,7,7-d7-cholestane (1) from cholesterol (3) is described. The deuterated material will be useful for the analysis of different sources of petroleum in analytical geochemistry laboratories as internal standard for quantification of steranes via gas chromatography-mass spectrometry (GC-MS). (author)

  1. Synthesis of chromium (V) complex in deuterated propanediol for a target with ''frozen'' polarization of deuterons

    Energy Technology Data Exchange (ETDEWEB)

    Bunyatova, E.I.; Bubnov, N.N.

    1987-02-15

    A deutron polarized frozen spin target was developed. To reach higher deuteron content and maximum polarization, the chromium (V) complex with ligands on the basis of fully deuterated propanediol-1,2 was synthesized. The synthesis and the EPR investigation is described. The research has been performed at the Laboratory of Nuclear Problems, JINR.

  2. Proton-detected MAS NMR experiments based on dipolar transfers for backbone assignment of highly deuterated proteins

    Science.gov (United States)

    Chevelkov, Veniamin; Habenstein, Birgit; Loquet, Antoine; Giller, Karin; Becker, Stefan; Lange, Adam

    2014-05-01

    Proton-detected solid-state NMR was applied to a highly deuterated insoluble, non-crystalline biological assembly, the Salmonella typhimurium type iii secretion system (T3SS) needle. Spectra of very high resolution and sensitivity were obtained at a low protonation level of 10-20% at exchangeable amide positions. We developed efficient experimental protocols for resonance assignment tailored for this system and the employed experimental conditions. Using exclusively dipolar-based interspin magnetization transfers, we recorded two sets of 3D spectra allowing for an almost complete backbone resonance assignment of the needle subunit PrgI. The additional information provided by the well-resolved proton dimension revealed the presence of two sets of resonances in the N-terminal helix of PrgI, while in previous studies employing 13C detection only a single set of resonances was observed.

  3. Ion acceleration and D-D nuclear fusion in laser-generated plasma from advanced deuterated polyethylene.

    Science.gov (United States)

    Torrisi, Lorenzo

    2014-10-23

    Deuterated polyethylene targets have been irradiated by means of a 1016 W/cm2 laser using 600 J pulse energy, 1315 nm wavelength, 300 ps pulse duration and 70 micron spot diameter. The plasma parameters were measured using on-line diagnostics based on ion collectors, SiC detectors and plastic scintillators, all employed in time-of-flight configuration. In addition, a Thomson parabola spectrometer, an X-ray streak camera, and calibrated neutron dosimeter bubble detectors were employed. Characteristic protons and neutrons at maximum energies of 3.0 MeV and 2.45 MeV, respectively, were detected, confirming that energy spectra of reaction products coming from deuterium-deuterium nuclear fusion occur. In thick advanced targets a fusion rate of the order of 2 × 108 fusions per laser shot was calculated.

  4. Ion Acceleration and D-D Nuclear Fusion in Laser-Generated Plasma from Advanced Deuterated Polyethylene

    Directory of Open Access Journals (Sweden)

    Lorenzo Torrisi

    2014-10-01

    Full Text Available Deuterated polyethylene targets have been irradiated by means of a 1016 W/cm2 laser using 600 J pulse energy, 1315 nm wavelength, 300 ps pulse duration and 70 micron spot diameter. The plasma parameters were measured using on-line diagnostics based on ion collectors, SiC detectors and plastic scintillators, all employed in time-of-flight configuration. In addition, a Thomson parabola spectrometer, an X-ray streak camera, and calibrated neutron dosimeter bubble detectors were employed. Characteristic protons and neutrons at maximum energies of 3.0 MeV and 2.45 MeV, respectively, were detected, confirming that energy spectra of reaction products coming from deuterium-deuterium nuclear fusion occur. In thick advanced targets a fusion rate of the order of 2 × 108 fusions per laser shot was calculated.

  5. Probing the mechanism of H/D exchange between deuterated ammonia and the [M-1]- ions of chlorinated benzene

    International Nuclear Information System (INIS)

    Chan, S.; Enke, C.G.

    1990-01-01

    Hydrogen/deuterium (H/D) exchange reactions have been shown to occur in a CI source between anions of substituted benzene and a number of deuterated reagents. These reactions are of interests because of their potential application for isomer identification using tandem mass spectrometry. The authors have studied H/D exchanges between ND 3 and the [M-1] - ion of chlorinated benzene in the second stage of a triple quadrupole mass spectrometer. The results derived from experiments on 1,2-dichlorobenzene, 1,3-dichlorobenzene and 1,4-dichlorobenzene exhibit maxima of 3, 2 and 1 sequential H/D exchanges, respectively. Higher collisional ND 3 pressure in the second quadrupole favors the formation of products with the maximum number of deuterium substitutions. These experiments strongly suggest that the charge on an [M-1] - reactant ions is localized on one of the carbons of the aromatic ring

  6. The rate of lactate production from glucose in hearts is not altered by per-deuteration of glucose

    Science.gov (United States)

    Funk, Alexander M.; Anderson, Brian L.; Wen, Xiaodong; Hever, Thomas; Khemtong, Chalermchai; Kovacs, Zoltan; Sherry, A. Dean; Malloy, Craig R.

    2017-11-01

    This study was designed to determine whether perdeuterated glucose experiences a kinetic isotope effect (KIE) as glucose passes through glycolysis and is further oxidized in the tricarboxylic acid (TCA) cycle. Metabolism of deuterated glucose was investigated in two groups of perfused rat hearts. The control group was supplied with a 1:1 mixture of [U-13C6]glucose and [1,6-13C2]glucose, while the experimental group received [U-13C6,U-2H7]glucose and [1,6-13C2]glucose. Tissue extracts were analyzed by 1H, 2H and proton-decoupled 13C NMR spectroscopy. Extensive 2H-13C scalar coupling plus chemical shift isotope effects were observed in the proton-decoupled 13C NMR spectra of lactate, alanine and glutamate. A small but measureable (∼8%) difference in the rate of conversion of [U-13C6]glucose vs. [1,6-13C2]glucose to lactate, likely reflecting rates of Csbnd C bond breakage in the aldolase reaction, but conversion of [U-13C6]glucose versus [U-13C6,U-2H7]glucose to lactate did not differ. This shows that the presence of deuterium in glucose does not alter glycolytic flux. However, there were two distinct effects of deuteration on metabolism of glucose to alanine and oxidation of glucose in the TCA. First, alanine undergoes extensive exchange of methyl deuterons with solvent protons in the alanine amino transferase reaction. Second, there is a substantial kinetic isotope effect in metabolism of [U-13C6,U-2H7]glucose to alanine and glutamate. In the presence of [U-13C6,U-2H7]glucose, alanine and lactate are not in rapid exchange with the same pool of pyruvate. These studies indicate that the appearance of hyperpolarized 13C-lactate from hyperpolarized [U-13C6,U-2H7]glucose is not substantially influenced by a deuterium kinetic isotope effect.

  7. Dissociative Ionization Mechanism and Appearance Energies in Adipic Acid Revealed by Imaging Photoelectron Photoion Coincidence, Selective Deuteration, and Calculations.

    Science.gov (United States)

    Heringa, Maarten F; Slowik, Jay G; Prévôt, André S H; Baltensperger, Urs; Hemberger, Patrick; Bodi, Andras

    2016-05-26

    Adipic acid, a model compound for oxygenated organic aerosol, has been studied at the VUV beamline of the Swiss Light Source. Internal energy selected cations were prepared by threshold photoionization using vacuum ultraviolet synchrotron radiation and imaging photoelectron photoion coincidence spectroscopy (iPEPICO). The threshold photoelectron spectrum yields a vertical ionization energy (IE) of 10.5 eV, significantly above the calculated adiabatic IE of 8.6 eV. The cationic minimum is accessible after vertical ionization by H-transfer from one of the γ-carbons to a carbonyl oxygen and is sufficiently energetic to decay by water loss at the ionization onset. The slope of the breakdown curves, quantum chemical calculations, and selective deuteration of the carboxylic hydrogens establish the dissociative photoionization mechanism. After ionization, one γ-methylene hydrogen and the two carboxylic hydrogens are randomized prior to H2O loss. On the basis of the deuteration degree in the H2O + CO-loss product at higher energies, a direct water-loss channel without complete randomization also exists. The breakdown diagram and center of gravity of the H2O + CO-loss peak were modeled to obtain 0 K appearance energies of 10.77, 10.32, and 11.53 eV for H2O + CO loss, CH2COOH loss, and H2O + CH2COOH loss from adipic acid. These agree well with the CBS-QB3 calculated values of 10.68, 10.45, and 11.57 eV, respectively, which shows that threshold photoionization can yield energetics data as long as the dissociation is statistical, even when the parent ion cannot be observed. The results can be used as a starting point for a deeper understanding of the ionization and low-energy fragmentation of organic aerosol components.

  8. Threshold photoelectron spectroscopy of the methyl radical isotopomers, CH3, CH2D, CHD2 and CD3: synergy between VUV synchrotron radiation experiments and explicitly correlated coupled cluster calculations.

    Science.gov (United States)

    Cunha de Miranda, Bárbara K; Alcaraz, Christian; Elhanine, Mohamed; Noller, Bastian; Hemberger, Patrick; Fischer, Ingo; Garcia, Gustavo A; Soldi-Lose, Héloïse; Gans, Bérenger; Mendes, Luiz A Vieira; Boyé-Péronne, Séverine; Douin, Stéphane; Zabka, Jan; Botschwina, Peter

    2010-04-15

    Threshold photoelectron spectra (TPES) of the isotopomers of the methyl radical (CH(3), CH(2)D, CHD(2), and CD(3)) have been recorded in the 9.5-10.5 eV VUV photon energy range using third generation synchrotron radiation to investigate the vibrational spectroscopy of the corresponding cations at a 7-11 meV resolution. A threshold photoelectron-photoion coincidence (TPEPICO) spectrometer based on velocity map imaging and Wiley-McLaren time-of-flight has been used to simultaneously record the TPES of several radical species produced in a Ar-seeded beam by dc flash-pyrolysis of nitromethane (CH(x)D(y)NO(2), x + y = 3). Vibrational bands belonging to the symmetric stretching and out-of-plane bending modes have been observed and P, Q, and R branches have been identified in the analysis of the rotational profiles. Vibrational configuration interaction (VCI), in conjunction with near-equilibrium potential energy surfaces calculated by the explicitly correlated coupled cluster method CCSD(T*)-F12a, is used to calculate vibrational frequencies for the four radical isotopomers and the corresponding cations. Agreement with data from high-resolution IR spectroscopy is very good and a large number of predictions is made. In particular, the calculated wavenumbers for the out-of-plane bending vibrations, nu(2)(CH(3)(+)) = 1404 cm(-1), nu(4)(CH(2)D(+)) = 1308 cm(-1), nu(4)(CHD(2)(+)) = 1205 cm(-1), and nu(2)(CD(3)(+)) = 1090 cm(-1), should be accurate to ca. 2 cm(-1). Additionally, computed Franck-Condon factors are used to estimate the importance of autoionization relative to direct ionization. The chosen models globally account for the observed transitions, but in contrast to PES spectroscopy, evidence for rotational and vibrational autoionization is found. It is shown that state-selected methyl cations can be produced by TPEPICO spectroscopy for ion-molecule reaction studies, which are very important for the understanding of the planetary ionosphere chemistry.

  9. Effect of Isotopic Substitution on Elementary Processes in Dye-Sensitized Solar Cells: Deuterated Amino-Phenyl Acid Dyes on TiO2

    Directory of Open Access Journals (Sweden)

    Sergei Manzhos

    2013-03-01

    Full Text Available We present the first computational study of the effects of isotopic substitution on the operation of dye-sensitized solar cells. Ab initio molecular dynamics is used to study the effect of deuteration on light absorption, dye adsorption dynamics, the averaged over vibrations driving force to injection (∆Gi and regeneration (∆Gr, as well as on promotion of electron back-donation in dyes NK1 (2E,4E-2-cyano-5-(4-dimethylaminophenylpenta-2,4-dienoic acid and NK7 (2E,4E-2-cyano-5-(4-diphenylaminophenylpenta-2,4-dienoic acid adsorbed in monodentate molecular and bidentate bridging dissociative configurations on the anatase (101 surface of TiO2. Deuteration causes a red shift of the absorption spectrum of the dye/TiO2 complex by about 5% (dozens of nm, which can noticeably affect the overlap with the solar spectrum in real cells. The dynamics effect on the driving force to injection and recombination (the difference between the averaged <∆Gi,r> and ∆Gi,requil at the equilibrium configuration is strong, yet there is surprisingly little isotopic effect: the average driving force to injection <∆Gi> and to regeneration <∆Gr> changes by only about 10 meV upon deuteration. The nuclear dynamics enhance recombination to the dye ground state due to the approach of the electron-donating group to TiO2, yet this effect is similar for deuterated and non-deuterated dyes. We conclude that the nuclear dynamics of the C-H(D bonds, mostly affected by deuteration, might not be important for the operation of photoelectrochemical cells based on organic dyes. As the expectation value of the ground state energy is higher than its optimum geometry value (by up to 0.1 eV in the present case, nuclear motions will affect dye regeneration by recently proposed redox shuttle-dye combinations operating at low driving forces.

  10. Deuterated Water in Comet C/1996 B2 (Hyakutake) and its Implications for the Origin of Comets

    Science.gov (United States)

    Bockelee-Morvan, D.; Gautier, D.; Lis, D. C.; Young, K.; Keene, J.; Phillips, T. G.; Owen, T.; Crovisier, J.; Goldsmith, P. F.; Bergin, E. A.; hide

    1998-01-01

    The close approach to the Earth of comet C/1996 B2 (Hyakutake) in March 1996 allowed searches for minor volatile species outgassing from the nucleus. We report the detection of deuterated water (HDO) through its 1(sub 01)-0(sub 00) rotational transition at 464.925 GHz using the Caltech Submillimeter Observatory. We also present negative results of a sensitive research for the J(5-4) line of deuterated hydrogen cyanide (DCN) at 362.046 GHz. Simultaneous observations of two rotational lines of methanol together with HDO in the same spectrum allow us to determine the average gas temperature within the telescope beam to be 69 +/- 10 K. We are thus able to constrain the excitation conditions in the inner coma and determine reliably the HDO production rate as (1.20 +/- 0.28) x 10(exp 26)/s on March 23-24, 1996. Available IR, UV and radio measurements lead to a water production rate of (2.1 +/- 0.5) x 10(exp 29)/s at the time of our HDO observations. The resulting D/H ratio in cometary water is thus (29 +/- 10) x 10(exp -5) in good agreement with the values of (30.8(sub - 5.3, sup +3.8) (Balsiger et al. 1995) and (31.6 +/- 3.4) x 10(exp -5) (Eberhardt et al. 1995) determined in comet P/Halley from in situ ion mass spectra. The inferred 3 a upper limit for the D/H ratio in HCN is 1%. Deuterium abundance is a key parameter for studying the origin and the early evolution of the Solar System and of its individual bodies. Our HDO measurement confirms that, in cometary water, deuterium is enriched by a factor of at least 10 relative to the protosolar ratio, namely the D/H ratio in H2 in the primitive Solar Nebula which formed from the collapse of the protosolar cloud. This indicates that cometary water has preserved a major part of the high D/H ratio acquired in this protosolar cloud through ion-molecule isotopic exchanges or grain-surface reactions and was not re-equilibrated with H2 in the Solar Nebula. Scenarios of formation of comets consistent with these results are

  11. Deuterated Water in Comet C/1996 B2 (Hyakutake) and Its Implications for the Origin of Comets

    Science.gov (United States)

    Bockelée-Morvan, D.; Gautier, D.; Lis, D. C.; Young, K.; Keene, J.; Phillips, T.; Owen, T.; Crovisier, J.; Goldsmith, P. F.; Bergin, E. A.; Despois, D.; Wootten, A.

    1998-05-01

    The close approach to the Earth of Comet C/1996 B2 (Hyakutake) in March 1996 allowed searches for minor volatile species outgassed from the nucleus. We report the detection of deuterated water (HDO) through its 101-000rotational transition at 464.925 GHz using the Caltech Submillimeter Observatory. We also present negative results of a sensitive search for theJ(5-4) line of deuterated hydrogen cyanide (DCN) at 362.046 GHz. Simultaneous observations of two rotational lines of methanol together with HDO in the same spectrum allow us to determine the average gas temperature within the telescope beam to be 69 ± 10 K. We are thus able to constrain the excitation conditions in the inner coma and determine reliably the HDO production rate as (1.20 ± 0.28) × 1026s-1on March 23-24, 1996. Available IR, UV, and radio measurements led to a water production rate of (2.1 ± 0.5) × 1029s-1at the time of our HDO observations. The resulting D/H ratio in cometary water is thus (29 ± 10) × 10-5, in good agreement with the values of (30.8+3.8-5.3) × 10-5(H. Balsigeret al., 1995,J. Geophys. Res.100, 5827-5834). and (31.6 ± 3.4) × 10-5(P. Eberhardet al., 1995,Astron. Astrophys.302, 301-316) determined in Comet P/Halley fromin situion mass spectra. The inferred 3σ upper limit for the D/H ratio in HCN is 1%. Deuterium abundance is a key parameter for studying the origin and the early evolution of the Solar System and of its individual bodies. Our HDO measurement confirms that, in cometary water, deuterium is enriched by a factor of at least 10 relative to the protosolar ratio, namely the D/H ratio in H2in the primitive Solar Nebula which formed from the collapse of the protosolar cloud. This indicates that cometary water has preserved a major part of the high D/H ratio acquired in this protosolar cloud through ion-molecule isotopic exchanges or grain-surface reactions and was not re-equilibrated with H2in the Solar Nebula. However, there are strong presumptions that interstellar

  12. Infrared spectra of BeSo4.4H2O and its deuterated analogue in 4000-1200 cm-1 region

    International Nuclear Information System (INIS)

    Srivastava, B.K.; Khandelwal, D.P.; Bist, H.D.

    1976-01-01

    IR spectra of BeSO 4 .4H 2 O and its deuterated analogue at approximately 300 K and approximately 110 K are reported in the region 4000-1200 cm -1 using thin film and nujol mull techniques. The observed bands have been assigned as the internal modes of the water and the oVertones and combinations of various modes using the recently revised assignments of SO 4 2- and Be(aq) 4 fundamentals in the region 120g-250 cmsub(-) 1 . The splitting of the internal modes of water has been discussed in the light of the effects of deuteration and cooling and it is shown that all the water molecules in a unit cell are asymmetric but crystallographically equivalent. (author)

  13. In situ-observation of the vertical motion of soil waters by means of deuterated water using the gamma/neutron method: Laboratory and field

    International Nuclear Information System (INIS)

    Moutonnet, P.; Couchat, P.; Brissaud, F.; Puard, M.; Pappalardo, A.

    1978-01-01

    In order to study water movements in the field, the gamma/neutron method for measuring deuterated water was investigated. A laboratory device is presented which supplies measurements on 5 ml soil solution samples. A probe for in situ experiments is studied in all its performances: Background, calibration (count rate versus volumetric deuterated water content) and resolution. A dispersive transport of D 2 O pulses on soil column is presented and checked with a numerical simulation model. Then simultaneous measurement of soil water content and D 2 O concentration by neutron moisture gauge and gamma/neutron probe enable us to interpret the evolution of D 2 O pulse with an experimental field irrigation. (orig.) [de

  14. Ground-based Detection of Deuterated Water in Comet C/2014 Q2 (Lovejoy) at IR Wavelengths

    Energy Technology Data Exchange (ETDEWEB)

    Paganini, L.; Mumma, M. J.; Villanueva, G. L. [Goddard Center for Astrobiology, NASA Goddard Space Flight Center, Greenbelt, MD (United States); Gibb, E. L. [Department of Physics and Astronomy, University of Missouri, St. Louis, MO (United States)

    2017-02-20

    We conducted a deep search for deuterated water (HDO) in the Oort Cloud comet C/2014 Q2 (Lovejoy), through infrared (IR) spectroscopy with NIRSPEC at the Keck Observatory. In this Letter, we present our detections of HDO and water (H{sub 2}O) in comet Lovejoy on 2015 February 4 (post-perihelion) after 1 hr integration on source. The IR observations allowed simultaneous detection of H{sub 2}O and HDO, yielding production rates of 5.9 ± 0.13 × 10{sup 29} and 3.6 ± 1.0 × 10{sup 26} molecules s{sup −1}, respectively. The simultaneous detection permitted accurate determination of the isotopic ratio (D/H) in water of 3.02 ± 0.87 × 10{sup −4}, i.e., larger than the value for water in terrestrial oceans (or Vienna Standard Mean Ocean Water, VSMOW) by a factor of 1.94 ± 0.56. This D/H ratio in water exceeds the value obtained independently at millimeter wavelengths (0.89 ± 0.25 VSMOW; pre-perihelion). We discuss these parameters in the context of origins and emphasize the need for contemporaneous measurements of HDO and H{sub 2}O.

  15. Using Neutron Diffraction to Investigate Texture Evolution During Consolidation of Deuterated Triaminotrinitrobenzene (d-TATB Explosive Powder

    Directory of Open Access Journals (Sweden)

    Darby J. Luscher

    2017-05-01

    Full Text Available Triaminotrinitrobenzene (TATB is a highly anisotropic molecular crystal used in several plastic-bonded explosive (PBX formulations. A complete understanding of the orientation distribution of TATB particles throughout a PBX charge is required to understand spatially variable, anisotropic macroscale properties of the charge. Although texture of these materials can be measured after they have been subjected to mechanical or thermal loads, measuring texture evolution in situ is important in order to identify mechanisms of crystal deformation and reorientation used to better inform thermomechanical models. Neutron diffraction measurements were used to estimate crystallographic reorientation while deuterated TATB (d-TATB powder was consolidated into a cylindrical pellet via a uniaxial die-pressing operation at room temperature. Both the final texture of the pressed pellet and the in situ evolution of texture during pressing were measured, showing that the d-TATB grains reorient such that (001 poles become preferentially aligned with the pressing direction. A compaction model is used to predict the evolution of texture in the pellet during the pressing process, finding that the original model overpredicted the texture strength compared to these measurements. The theory was extended to account for initial particle shape and pore space, bringing the results into good agreement with the data.

  16. Phase transitions and hydrogen bonding in deuterated calcium hydroxide: High-pressure and high-temperature neutron diffraction measurements

    International Nuclear Information System (INIS)

    Iizuka, Riko; Komatsu, Kazuki; Kagi, Hiroyuki; Nagai, Takaya; Sano-Furukawa, Asami; Hattori, Takanori; Gotou, Hirotada; Yagi, Takehiko

    2014-01-01

    In situ neutron diffraction measurements combined with the pulsed neutron source at the Japan Proton Accelerator Research Complex (J-PARC) were conducted on high-pressure polymorphs of deuterated portlandite (Ca(OD) 2 ) using a Paris–Edinburgh cell and a multi-anvil press. The atomic positions including hydrogen for the unquenchable high-pressure phase at room temperature (phase II′) were first clarified. The bent hydrogen bonds under high pressure were consistent with results from Raman spectroscopy. The structure of the high-pressure and high-temperature phase (Phase II) was concordant with that observed previously by another group for a recovered sample. The observations elucidate the phase transition mechanism among the polymorphs, which involves the sliding of CaO polyhedral layers, position modulations of Ca atoms, and recombination of Ca–O bonds accompanied by the reorientation of hydrogen to form more stable hydrogen bonds. - Graphical abstract: Crystal structures of high-pressure polymorphs of Ca(OD) 2 , (a) at room temperature (phase II′) and (b) at high temperature (phase II), were obtained from in situ neutron diffraction measurements. - Highlights: • We measured in situ neutron diffraction of high-pressure polymorphs of Ca(OD) 2 . • Hydrogen positions of the high-pressure phase are first determined. • The obtained hydrogen bonds reasonably explain Raman peaks of OH stretching modes. • A phase transition mechanism among the polymorphs is proposed

  17. Analysis of Mammalian Cell Proliferation and Macromolecule Synthesis Using Deuterated Water and Gas Chromatography-Mass Spectrometry

    Directory of Open Access Journals (Sweden)

    Victoria C. Foletta

    2016-10-01

    Full Text Available Deuterated water (2H2O, a stable isotopic tracer, provides a convenient and reliable way to label multiple cellular biomass components (macromolecules, thus permitting the calculation of their synthesis rates. Here, we have combined 2H2O labelling, GC-MS analysis and a novel cell fractionation method to extract multiple biomass components (DNA, protein and lipids from the one biological sample, thus permitting the simultaneous measurement of DNA (cell proliferation, protein and lipid synthesis rates. We have used this approach to characterize the turnover rates and metabolism of a panel of mammalian cells in vitro (muscle C2C12 and colon cancer cell lines. Our data show that in actively-proliferating cells, biomass synthesis rates are strongly linked to the rate of cell division. Furthermore, in both proliferating and non-proliferating cells, it is the lipid pool that undergoes the most rapid turnover when compared to DNA and protein. Finally, our data in human colon cancer cell lines reveal a marked heterogeneity in the reliance on the de novo lipogenic pathway, with the cells being dependent on both ‘self-made’ and exogenously-derived fatty acid.

  18. Crystal structures of deuterated sodium molybdate dihydrate and sodium tungstate dihydrate from time-of-flight neutron powder diffraction.

    Science.gov (United States)

    Fortes, A Dominic

    2015-07-01

    Time-of-flight neutron powder diffraction data have been measured from ∼90 mol% deuterated isotopologues of Na2MoO4·2H2O and Na2WO4·2H2O at 295 K to a resolution of sin (θ)/λ = 0.77 Å(-1). The use of neutrons has allowed refinement of structural parameters with a precision that varies by a factor of two from the heaviest to the lightest atoms; this contrasts with the X-ray based refinements where precision may be > 20× poorer for O atoms in the presence of atoms such as Mo and W. The accuracy and precision of inter-atomic distances and angles are in excellent agreement with recent X-ray single-crystal structure refinements whilst also completing our view of the hydrogen-bond geometry to the same degree of statistical certainty. The two structures are isotypic, space-group Pbca, with all atoms occupying general positions, being comprised of edge- and corner-sharing NaO5 and NaO6 polyhedra that form layers parallel with (010) inter-leaved with planes of XO4 (X = Mo, W) tetra-hedra that are linked by chains of water mol-ecules along [100] and [001]. The complete structure is identical with the previously described molybdate [Capitelli et al. (2006 ▸). Asian J. Chem. 18, 2856-2860] but shows that the purported three-centred inter-action involving one of the water mol-ecules in the tungstate [Farrugia (2007 ▸). Acta Cryst. E63, i142] is in fact an ordinary two-centred 'linear' hydrogen bond.

  19. Visualization of root water uptake: quantification of deuterated water transport in roots using neutron radiography and numerical modeling.

    Science.gov (United States)

    Zarebanadkouki, Mohsen; Kroener, Eva; Kaestner, Anders; Carminati, Andrea

    2014-10-01

    Our understanding of soil and plant water relations is limited by the lack of experimental methods to measure water fluxes in soil and plants. Here, we describe a new method to noninvasively quantify water fluxes in roots. To this end, neutron radiography was used to trace the transport of deuterated water (D2O) into roots. The results showed that (1) the radial transport of D2O from soil to the roots depended similarly on diffusive and convective transport and (2) the axial transport of D2O along the root xylem was largely dominated by convection. To quantify the convective fluxes from the radiographs, we introduced a convection-diffusion model to simulate the D2O transport in roots. The model takes into account different pathways of water across the root tissue, the endodermis as a layer with distinct transport properties, and the axial transport of D2O in the xylem. The diffusion coefficients of the root tissues were inversely estimated by simulating the experiments at night under the assumption that the convective fluxes were negligible. Inverse modeling of the experiment at day gave the profile of water fluxes into the roots. For a 24-d-old lupine (Lupinus albus) grown in a soil with uniform water content, root water uptake was higher in the proximal parts of lateral roots and decreased toward the distal parts. The method allows the quantification of the root properties and the regions of root water uptake along the root systems. © 2014 American Society of Plant Biologists. All Rights Reserved.

  20. An optimized method for {sup 15}N R{sub 1} relaxation rate measurements in non-deuterated proteins

    Energy Technology Data Exchange (ETDEWEB)

    Gairí, Margarida, E-mail: mgairi@rmn.ub.edu [University of Barcelona (CCiTUB), NMR Facility, Scientific and Technological Centers (Spain); Dyachenko, Andrey [Institute for Research in Biomedicine (IRB) (Spain); González, M. Teresa; Feliz, Miguel [University of Barcelona (CCiTUB), NMR Facility, Scientific and Technological Centers (Spain); Pons, Miquel [University of Barcelona, Biomolecular NMR Laboratory and Organic Chemistry Department (Spain); Giralt, Ernest, E-mail: ernest.giralt@irbbarcelona.org [Institute for Research in Biomedicine (IRB) (Spain)

    2015-06-15

    {sup 15}N longitudinal relaxation rates are extensively used for the characterization of protein dynamics; however, their accurate measurement is hindered by systematic errors. {sup 15}N CSA/{sup 1}H–{sup 15}N dipolar cross-correlated relaxation (CC) and amide proton exchange saturation transfer from water protons are the two main sources of systematic errors in the determination of {sup 15}N R{sub 1} rates through {sup 1}H–{sup 15}N HSQC-based experiments. CC is usually suppressed through a train of 180° proton pulses applied during the variable {sup 15}N relaxation period (T), which can perturb water magnetization. Thus CC cancellation is required in such a way as to minimize water saturation effects. Here we examined the level of water saturation during the T period caused by various types of inversion proton pulses to suppress CC: (I) amide-selective IBURP-2; (II) cosine-modulated IBURP-2; (III) Watergate-like blocks; and (IV) non-selective hard. We additionally demonstrate the effect of uncontrolled saturation of aliphatic protons on {sup 15}N R{sub 1} rates. In this paper we present an optimized pulse sequence that takes into account the crucial effect of controlling also the saturation of the aliphatic protons during {sup 15}N R{sub 1} measurements in non-deuterated proteins. We show that using cosine-modulated IBURP-2 pulses spaced 40 ms to cancel CC in this optimized pulse program is the method of choice to minimize systematic errors coming from water and aliphatic protons saturation effects.

  1. Infrared absorption spectra of partially deuterated methoxy radicals CH2DO and CHD2O isolated in solid para-hydrogen.

    Science.gov (United States)

    Haupa, Karolina A; Johnson, Britta A; Sibert, Edwin L; Lee, Yuan-Pern

    2017-10-21

    The investigation of partially deuterated methoxy radicals is important because the symmetry lowering from C 3v to C s provides new insights into the couplings between rovibronic states via Jahn-Teller and spin-orbit interactions. The vibrational spectrum of the partially deuterated methoxy radical CH 2 DO in a matrix of p-H 2 has been recorded. This species was prepared by irradiating a p-H 2 matrix containing deuterated d 1 -nitritomethane (CH 2 DONO) at 3.3 K with laser light at 355 nm. The identification of the radical is based on the photochemical behavior of the precursor and comparison of observed vibrational wavenumbers and infrared (IR) intensities with those predicted from a refined quartic, curvilinear, internal coordinate force field calculated with the coupled-cluster singles and doubles with perturbative triples/cc-pVTZ method. CH 2 DO reacts with H 2 with a rate coefficient (3.5 ± 1.0) × 10 -3 s -1 . Predominantly c-CHDOH and a negligibly small amount of t-CHDOH were produced. This stereoselectivity results from the reaction H + C s -CH 2 DOH, which was demonstrated by an additional experiment on irradiation of a CH 2 DOH/Cl 2 /p-H 2 matrix with ultraviolet and IR light to induce the H + CH 2 DOH reaction; only c-CHDOH was observed from this experiment. Even though the energies of transition states and products for the formation of c-CHDOH and t-CHDOH differ by only ∼10 cm -1 , the selective formation of c-CHDOH can be explained by tunneling of the hydrogen atom via an optimal tunneling path. Similarly, the vibronic spectrum for the partially deuterated specie d 2 -methoxy radical (CHD 2 O) was obtained upon irradiation of d 2 -nitritomethane (CHD 2 ONO) at 355 nm. Lines associated with the fundamental vibrational modes were observed and assigned; line positions agree with theoretically predicted vibrational wavenumbers. CHD 2 O reacts with H 2 with a rate coefficient (6.0 ± 1.4) × 10 -3 s -1 ; CD 2 OH was produced as a major product because

  2. Deuteration of acetanilides

    Energy Technology Data Exchange (ETDEWEB)

    Chin, S.K.; Collier, R.; Hutchinson, D.W. (Warwick Univ., Coventry (UK). Dept. of Chemistry and Molecular Sciences)

    1982-09-01

    The base-catalysed exchange of a proton of the methyl groups in acetanilides can be used to incorporate deuterium into these amides. 4'-Hydroxyl-2(/sup 2/H)acetanilide (acetaminophen, paracetamol) can be prepared by the demethylation with boron tribromide of 4'-methoxy-2(/sup 2/H) acetamide obtained by this base-catalysed exchange.

  3. Synthesis of deuterated clenbuterol

    Energy Technology Data Exchange (ETDEWEB)

    Joergensen, Ole [Risoe National Lab., Roskilde (Denmark). Solid State Physics Dept.; Egsgaard, Helge; Larsen, Elfinn [Risoe National Lab., Roskilde (Denmark). Science and Technology Dept.

    1996-11-01

    The synthesis of D{sub 9}-clenbuterol (I) and D{sub 3}-clenbuterol (II) is described. D{sub 9}-clenbuterol (I) was prepared from 4-amino-{alpha}-bromo-3, 5-dichloroacetophenone by reaction with D{sub 9}-tert-butylamine followed by reduction of the keto group with NaBH{sub 4}. D{sub 3}-clenbuterol (II) was prepared from 4-amino-{alpha}-tert-butylamino-3, 5-dichloroacetophenone by an exchange reaction of the {alpha}-hydrogens with deuterium followed by reduction of the keto group with NaBD{sub 4}. The eventual products were characterized by mass spectrometry and NMR. (author).

  4. Application of the deuterated retinol dilution technique to detect changes in hepatic retinol reserves in infants who receive high dose vitamin A supplements

    International Nuclear Information System (INIS)

    Penny, M.; Lanata, C.; Butron, B.; Haskell, M.; Brown, K.

    1997-01-01

    The purpose of this pilot study is to determine whether the deuterated retinol dilution technique can detect changes in hepatic vitamin A reserves in Peruvian infants in response to supplementation with vitamin A palmitate. Approximately 40 infants, 9 months of age, will be recruited for the study and randomly assigned to four treatment groups. Hepatic vitamin A reserves will be estimated using the deuterated retinol dilution technique before and after administration of a single supplement containing either 0, 7.5, 15, or 30 mg RE as retinyl palmitate in corn oil. Mean hepatic vitamin A reserves will be calculated based on the plasma isotopic ratio of d4-retinol:retinol as per Furr, et. al. Hepatic vitamin A reserves will be compared within groups before and after supplementation, and among the four groups. The mean change in hepatic vitamin A reserves across the four treatment groups will be examined in relation to the amount of vitamin A supplement administered, using regression analysis. The results of the pilot study will provide information on the size and variation of hepatic vitamin A reserves in 9-month old Peruvian infants. This information will be useful for calculating samples sizes to evaluate vitamin A intervention strategies by estimating changes in hepatic vitamin A stores in this age group, using the DRD technique. (author)

  5. Selectively deuterated liquid crystalline cyanoazobenzene side-chain polyesters. 3. Investigations of laser induced segmental mobility by Fourier transform infrared spectroscopy

    DEFF Research Database (Denmark)

    Kulinna, Christian; Hvilsted, Søren; Hendann, Claudia

    1998-01-01

    The laser-induced anisotropy in thin films of an extensive number of cyanoazobenzene sidechain liquid crystalline polytetradecanedioates, -dodecanedioates, and -adipates selectively deuterated at different positions have been investigated with polarized FTIR spectroscopy. The analysis of the segm......The laser-induced anisotropy in thin films of an extensive number of cyanoazobenzene sidechain liquid crystalline polytetradecanedioates, -dodecanedioates, and -adipates selectively deuterated at different positions have been investigated with polarized FTIR spectroscopy. The analysis...... of the segmental orientation based on dichroic ratios of characteristic absorption bands shows that, in polyesters with long main-chain spacing (tetradecanedioates and dodecanedioates), not only the light sensitive azo chromophore but also the main-chain methylene segment and to a smaller extent the flexible...... spacer are preferentially oriented perpendicular to the laser light polarization. The extent of orientation increases with increasing spacer length. On the other hand, in the shorter adipates only the chromophore and the spacer are likewise oriented. Rapid-scan FTIR analysis performed on...

  6. Infrared and Raman study of the fast internal motions of non-rigid molecules in condensed state: method of selective deuteration

    International Nuclear Information System (INIS)

    Lascombe, J.; Cavagnat, D.; Lassegues, J.C.; Rafilipomanana, C.

    1983-01-01

    The dynamical behaviour of non-rigid molecules in the gas state is now well known but very little information is available on these molecules in condensed state. The authors present a method of study based on the analysis of the infrared and Raman spectra of selectively deuterated molecules. It is applied to the nitromethane and cyclopentene molecules which provide respectively characteristic examples of methyl internal rotation and ring-puckering motion. In each case, an isolated -C0 or -CD oscillator is modulated by the internal motion and several γ(CH) or γ(CD) bands are observed as a result of the dependence of the vibrational frequency of the oscillator on its conformational situation. Moreover, in the case of crystalline nitromethane a detailed study of the temperature dependence of the band profiles allows the main mechanism of relaxation of the -CH oscillator to be deduced. (orig.)

  7. Poly(dA-dT).poly(dA-dT) two-pathway proton exchange mechanism. Effect of general and specific base catalysis on deuteration rates

    International Nuclear Information System (INIS)

    Hartmann, B.; Leng, M.; Ramstein, J.

    1986-01-01

    The deuteration rates of the poly(dA-dT).poly(dA-dT) amino and imino protons have been measured with stopped-flow spectrophotometry as a function of general and specific base catalyst concentration. Two proton exchange classes are found with time constants differing by a factor of 10 (4 and 0.4 s-1). The slower class represents the exchange of the adenine amino protons whereas the proton of the faster class has been assigned to the thymine imino proton. The exchange rates of these two classes of protons are independent of general and specific base catalyst concentration. This very characteristic behavior demonstrates that in our experimental conditions the exchange rates of the imino and amino protons in poly(dA-dT).poly(dA-dT) are limited by two different conformational fluctuations. We present a three-state exchange mechanism accounting for our experimental results

  8. Predicting laser-induced bulk damage and conditioning for deuterated potassium di-hydrogen phosphate crystals using ADM (absorption distribution model)

    Energy Technology Data Exchange (ETDEWEB)

    Liao, Z M; Spaeth, M L; Manes, K; Adams, J J; Carr, C W

    2010-02-26

    We present an empirical model that describes the experimentally observed laser-induced bulk damage and conditioning behavior in deuterated Potassium dihydrogen Phosphate (DKDP) crystals in a self-consistent way. The model expands on an existing nanoabsorber precursor model and the multi-step absorption mechanism to include two populations of absorbing defects, one with linear absorption and another with nonlinear absorption. We show that this model connects previously uncorrelated small-beam damage initiation probability data to large-beam damage density measurements over a range of ns pulse widths relevant to ICF lasers such as the National Ignition Facility (NIF). In addition, this work predicts the damage behavior of laser-conditioned DKDP and explains the upper limit to the laser conditioning effect. The ADM model has been successfully used during the commissioning and early operation of the NIF.

  9. Loss of ammonia during electron-transfer dissociation of deuterated peptides as an inherent gauge of gas-phase hydrogen scrambling

    DEFF Research Database (Denmark)

    Rand, Kasper D; Zehl, Martin; Jensen, Ole Nørregaard

    2010-01-01

    we utilize the abundant loss of ammonia upon ETD of peptide ions as a universal reporter of positional randomization of the exchangeable hydrogens (hydrogen scrambling) during HX-ETD experiments. We show that the loss of ammonia from peptide ions proceeds without depletion of deuterium when employing......The application of electron-transfer dissociation (ETD) to obtain single-residue resolution in hydrogen exchange-mass spectrometry (HX-MS) experiments has recently been demonstrated. For such measurements, it is critical to ensure that the level of gas-phase hydrogen scrambling is negligible. Here...... detected by a depletion of deuterium when deuterated ammonia is lost from peptides during ETD. This straightforward method requires no modifications to the experimental workflow and has the great advantage that the occurrence of hydrogen scrambling can be directly detected in the actual peptides analyzed...

  10. Kinetics and isotope fractionation in deuterium exchange between N1-methyl-N2-phenylthiourea and S-deuterated t-butylthiol in aprotic solvents

    International Nuclear Information System (INIS)

    Wawer, A.; Szydlowski, J.

    2001-01-01

    The kinetics and isotope fractionation of deuterium in the exchange reaction between N 1 -methyl-N 2 -phenylthiourea and S-deuterated t-butylthiol in selected aprotic solvents: methylene chloride, tetrahydrofuran, acetone, dimethyl sulphoxide and acetonitrile have been determined. The rate of the deuterium exchange in N 1 H site is higher than that in N 2 H site and both depend visibly on the solvent. The higher the polarity of the solvent the lower the rate constant constant of the exchange reaction. The equilibrium isotope effect is relatively high and depends on the solvent, however, no distinct correlation could be found between the fractionation factor and electron donor or acceptor properties of the solvent. (author)

  11. Deuteration of CH+n (n = 3-5) in Collisions with HD Measured in a Low-Temperature Ion Trap

    Science.gov (United States)

    Asvany, O.; Schlemmer, S.; Gerlich, D.

    2004-12-01

    Deuteration of small hydrocarbon ions CH+n via H-D exchange (n=3-5) has been studied in a 22 pole ion trap at a nominal temperature of 15 K. Sequential deuteration from CH+3 to CD+3 is very fast if one uses pure HD as the target gas. Rate coefficients have been measured to be 1.65×10-9, 1.59×10-9, and 1.50×10-9 cm3 s-1. If, however, CH+3 is relaxed in p-H2 containing traces of HD, the rate coefficient for isotope enrichment is significantly smaller, (4+/-2)×10-10 cm3 s-1. This important result is most probably due to symmetry selection rules influencing this reaction. The ions CH+4 and CH+5 are not observed, within the experimental uncertainties, to exchange H atoms for D atoms at all. Upper limits for the rate coefficients for forming CH3D+ and CH4D+ are 1×10-12 and 5×10-18 cm3 s-1, respectively. Hydrogen or deuterium abstraction in collisions of CH+4 with HD occurs with a sum rate coefficient of 4.5×10-10 cm3 s-1. Surprisingly, the more exoenergetic and statistically favored product CH4D+ is formed only in 1/3 of the reactive collisions, while CH+5 dominates with 2/3. The results are discussed on the basis of the formation of long-lived collision intermediates, open- and closed-shell ions, and barriers along the reaction path. All experimental data clearly indicate that conservation of total nuclear spin plays an important role in these low-temperature chemical reactions involving identical nuclei. Implications of this laboratory work to isotopic fractionation in astrophysical environments are discussed.

  12. Crystal structure of the sodium cobaltate deuterate superconductor NaxCoO2·4xD2O (x≅(1/3))

    International Nuclear Information System (INIS)

    Jorgensen, J.D.; Avdeev, M.; Hinks, D.G.; Burley, J.C.; Short, S.

    2003-01-01

    Neutron and x-ray powder diffraction have been used to investigate the crystal structures of a sample of the newly-discovered superconducting sodium cobaltate deuterate compound with composition Na 0.31(3) CoO 2 ·1.25(2)D 2 O and its anhydrous parent compound Na 0.61(1) CoO 2 . The anhydrous parent compound Na 0.61(1) CoO 2 has two partially occupied Na sites sandwiched, in the same plane, between CoO 2 layers. When Na is removed to make the superconducting composition, the Na site that experiences the strongest Na-Co repulsion is emptied while the occupancy of the other Na site is reduced to about one third. The deuterate superconducting compound is formed by coordinating four D 2 O molecules (two above and two below) to each remaining Na ion in a way that gives Na-O distances nearly equal to those in the parent compound. One deuteron of the D 2 O molecule is hydrogen bonded to an oxygen atom in the CoO 2 plane and the oxygen atom and the second deuteron of each D 2 O molecule lie approximately in a plane between the Na layer and the CoO 2 layers. This coordination of Na by four D 2 O molecules leads in a straightforward way to ordering of the Na ions and D 2 O molecules consistent with the observation of additional shorter-range scattering features in the diffraction data. The sample studied here, which has T c =4.5 K, has a refined composition of Na 0.31(3) CoO 2 ·1.25(2)D 2 O, in agreement with the expected 1:4 ratio of Na to D 2 O. These results show that the optimal superconducting composition should be viewed as a specific hydrated compound, not a solid solution of Na and D 2 O (H 2 O) in Na x CoO 2 ·D 2 O. The hydrated superconducting compound may be stable over a limited range of Na and D 2 O concentration, but studies of T c and other physical properties vs Na or D 2 O composition should be viewed with caution until it is verified that the compound remains in the same phase over the composition range of the study

  13. Crystal structure of the sodium cobaltate deuterate superconductor NaxCoO2ṡ4xD2O (x≈1/3)

    Science.gov (United States)

    Jorgensen, J. D.; Avdeev, M.; Hinks, D. G.; Burley, J. C.; Short, S.

    2003-12-01

    Neutron and x-ray powder diffraction have been used to investigate the crystal structures of a sample of the newly-discovered superconducting sodium cobaltate deuterate compound with composition Na0.31(3)CoO2ṡ1.25(2)D2O and its anhydrous parent compound Na0.61(1)CoO2. The anhydrous parent compound Na0.61(1)CoO2 has two partially occupied Na sites sandwiched, in the same plane, between CoO2 layers. When Na is removed to make the superconducting composition, the Na site that experiences the strongest Na Co repulsion is emptied while the occupancy of the other Na site is reduced to about one third. The deuterate superconducting compound is formed by coordinating four D2O molecules (two above and two below) to each remaining Na ion in a way that gives Na O distances nearly equal to those in the parent compound. One deuteron of the D2O molecule is hydrogen bonded to an oxygen atom in the CoO2 plane and the oxygen atom and the second deuteron of each D2O molecule lie approximately in a plane between the Na layer and the CoO2 layers. This coordination of Na by four D2O molecules leads in a straightforward way to ordering of the Na ions and D2O molecules consistent with the observation of additional shorter-range scattering features in the diffraction data. The sample studied here, which has Tc=4.5 K, has a refined composition of Na0.31(3)CoO2ṡ1.25(2)D2O, in agreement with the expected 1:4 ratio of Na to D2O. These results show that the optimal superconducting composition should be viewed as a specific hydrated compound, not a solid solution of Na and D2O (H2O) in NaxCoO2ṡD2O. The hydrated superconducting compound may be stable over a limited range of Na and D2O concentration, but studies of Tc and other physical properties vs Na or D2O composition should be viewed with caution until it is verified that the compound remains in the same phase over the composition range of the study.

  14. Neutron and X-ray investigations of the Jahn–Teller switch in partially deuterated ammonium copper Tutton salt, (NH 4 ) 2 [Cu(H 2 O) 6 ](SO 4 ) 2

    Energy Technology Data Exchange (ETDEWEB)

    Jørgensen, Mads R. V.; Piccoli, Paula M. B.; Hathwar, Venkatesha R.; Wang, Xiaoping; Hoffmann, Christina M.; Yakovenko, Andrey A.; Halder, Gregory J.; Schlueter, John A.; Iversen, Bo B.; Schultz, Arthur J.

    2017-01-31

    The structural phase transition accompanied by a Jahn–Teller switch has been studied over a range of H/D ratios in (NH4)2[Cu(H2O)6](SO4)2(ACTS). In particular, single-crystal neutron diffraction investigations of crystals with deuteration in the range 50 to 82% are shown to be consistent with previous electron paramagnetic resonance (EPR) experiments exhibiting a phase boundary at 50% deuteration under ambient pressure. Polycrystalline samples show that the two phases can co-exist. In addition, single-crystal neutron and polycrystalline X-ray diffraction pressure experiments show a shift to lower pressure at 60% deuterationversusprevious measurements at 100% deuteration.

  15. DMSO-enhanced MALDI MS imaging with normalization against a deuterated standard for relative quantification of dasatinib in serial mouse pharmacology studies.

    Science.gov (United States)

    Schulz, Sandra; Gerhardt, Dimitri; Meyer, Björn; Seegel, Maic; Schubach, Bernhard; Hopf, Carsten; Matheis, Katerina

    2013-11-01

    Matrix-assisted laser desorption/ionization mass spectrometry imaging is an emerging powerful technique in drug metabolism and pharmacokinetics research. Despite recent progress in mass-spectrometry-based localization and relative quantification of small-molecule drugs and their metabolites in tissue, improved methods for drug extraction/ionization are required. Furthermore, relative quantification of drugs by mass spectrometry imaging in larger rodent cohorts is a necessary proof-of-concept study to demonstrate the utility of such a workflow in an industrial setting. Using as an example the tyrosine kinase inhibitor dasatinib, a leukemia drug, we demonstrate that inclusion of dimethyl sulfoxide in standard matrix solutions significantly improves ion intensity in mass spectrometry images and reveals enrichment of the drug in mouse kidney medulla. We furthermore show in a time-course study in multiple mice that normalization against a deuterated internal standard, dasatinib-D8, which is applied together with the matrix, makes possible relative quantification of the drug that correlates well with canonical liquid chromatography–tandem mass spectrometry based drug quantification.

  16. Local order in fully deuterated liquid N-methylacetamide (C3D7NO) as studied by neutron diffraction and density-functional theory calculations.

    Science.gov (United States)

    Trabelsi, Sahbi; Nasr, Salah; Bahri, Mohamed; Bellissent-Funel, Marie-Claire

    2006-12-14

    A structural investigation of fully deuterated liquid N-methylacetmide (NMAd7) is performed at 308 K and atmospheric pressure by using neutron diffraction together with density-functional theory (DFT). The analysis of experimental data yields the total structure factor SM(Q), the molecular form factor F1(Q), and the distinct pair correlation function gL(r). The DFT calculations are performed to study the relative stability of the two possible isomers (trans and cis) and to examine some possible clusters recently published that may describe the intermolecular arrangement in the liquid state. Neutron measurements can be interpreted in terms of trans linear trimer (T1) and cis cyclic trimer (T2) where the total number of hydrogen bonds is respectively equal to two and three. The theoretical structure factors obtained on the basis of intermolecular arrangements agree fairly well with the experimental one beyond Q = 2 A-1. All through the study, a comparison is made with complementary X-ray results.

  17. Dietary vitamin A intakes of Filipino elders with adequate or low liver vitamin A concentrations as assessed by the deuterated-retinol-dilution method: implications for dietary requirements.

    Science.gov (United States)

    Ribaya-Mercado, Judy D; Solon, Florentino S; Fermin, Liza S; Perfecto, Christine S; Solon, Juan Antonio A; Dolnikowski, Gregory G; Russell, Robert M

    2004-04-01

    The vitamin A requirements of elderly humans have not been studied. In a cross-sectional study of 60-88-y-old men (n = 31) and women (n = 31) in rural Philippines, we assessed the dietary intakes of elders with adequate (> or = 0.07 micromol/g) or low (value for elders. The mean (+/- SD) vitamin A intakes of the men and women with adequate vitamin A in liver were 135 +/- 86 and 134 +/- 104 microg retinol activity equivalents (RAE)/d, respectively; intakes of the men and women with low vitamin A in liver were 75 +/- 53 and 60 +/- 27 microg RAE/d, respectively. Total-body vitamin A or liver vitamin A but not serum retinol correlated with dietary RAE, preformed vitamin A, beta-carotene, fat, and protein. An estimated acceptable or sufficient dietary vitamin A intake associated with adequate liver vitamin A concentrations in elders is 6.45 microg RAE/kg body wt; for a reference 76-kg man and a 61-kg woman, these values are approximately 500 and 400 microg RAE/d, respectively. The dietary vitamin A intakes of elders with adequate or low liver vitamin A concentrations as estimated by use of the deuterated-retinol-dilution technique are useful for assessing vitamin A requirements.

  18. A novel liquid-liquid extraction for the determination of naphthalene by GC-MS with deuterated anthracene as internal standard.

    Science.gov (United States)

    Erarpat, Sezin; Özzeybek, Gözde; Chormey, Dotse Selali; Erulaş, Fatih; Turak, Fatma; Bakırdere, Sezgin

    2017-09-30

    Polycyclic aromatic hydrocarbons are known for their carcinogenic and mutagenic effects on human health. This therefore calls for the regulation of their concentrations in air, water, and soil. Naphthalene as the simplest in structure of the polycyclic aromatic hydrocarbons is mainly used as a starter material for other chemicals but also has impacts on human health. A method is therefore proposed for the determination of naphthalene in water samples by gas chromatography mass spectrometry after liquid-liquid extraction. The extraction method was optimized to improve the extraction output, thereby lowering the limit of detection. The limits of detection and quantification obtained for naphthalene were 4.4 and 14.6 ng mL -1 , respectively. Deuterated anthracene was used as internal standard to enhance the precision of the method, for which a relative standard deviation of 4.3% was obtained. The percent recovery of naphthalene obtained from tap water was ranged between 93.8 and 102.2.

  19. Use of a Deuterated Internal Standard with Pyrolysis-GC/MS Dimeric Marker Analysis to Quantify Tire Tread Particles in the Environment

    Directory of Open Access Journals (Sweden)

    Julie M. Panko

    2012-11-01

    Full Text Available Pyrolysis(pyr-GC/MS analysis of characteristic thermal decomposition fragments has been previously used for qualitative fingerprinting of organic sources in environmental samples. A quantitative pyr-GC/MS method based on characteristic tire polymer pyrolysis products was developed for tread particle quantification in environmental matrices including soil, sediment, and air. The feasibility of quantitative pyr-GC/MS analysis of tread was confirmed in a method evaluation study using artificial soil spiked with known amounts of cryogenically generated tread. Tread concentration determined by blinded analyses was highly correlated (r2 ³ 0.88 with the known tread spike concentration. Two critical refinements to the initial pyrolysis protocol were identified including use of an internal standard and quantification by the dimeric markers vinylcyclohexene and dipentene, which have good specificity for rubber polymer with no other appreciable environmental sources. A novel use of deuterated internal standards of similar polymeric structure was developed to correct the variable analyte recovery caused by sample size, matrix effects, and ion source variability. The resultant quantitative pyr-GC/MS protocol is reliable and transferable between laboratories.

  20. Use of a Deuterated Internal Standard with Pyrolysis-GC/MS Dimeric Marker Analysis to Quantify Tire Tread Particles in the Environment

    Science.gov (United States)

    Unice, Kenneth M.; Kreider, Marisa L.; Panko, Julie M.

    2012-01-01

    Pyrolysis(pyr)-GC/MS analysis of characteristic thermal decomposition fragments has been previously used for qualitative fingerprinting of organic sources in environmental samples. A quantitative pyr-GC/MS method based on characteristic tire polymer pyrolysis products was developed for tread particle quantification in environmental matrices including soil, sediment, and air. The feasibility of quantitative pyr-GC/MS analysis of tread was confirmed in a method evaluation study using artificial soil spiked with known amounts of cryogenically generated tread. Tread concentration determined by blinded analyses was highly correlated (r2 ≥ 0.88) with the known tread spike concentration. Two critical refinements to the initial pyrolysis protocol were identified including use of an internal standard and quantification by the dimeric markers vinylcyclohexene and dipentene, which have good specificity for rubber polymer with no other appreciable environmental sources. A novel use of deuterated internal standards of similar polymeric structure was developed to correct the variable analyte recovery caused by sample size, matrix effects, and ion source variability. The resultant quantitative pyr-GC/MS protocol is reliable and transferable between laboratories. PMID:23202830

  1. Seasonal nutrient dynamics and biomass quality of giant reed (Arundo donax L. and miscanthus (Miscanthus x giganteus Greef et Deuter as energy crops

    Directory of Open Access Journals (Sweden)

    Nicoletta Nassi o Di Nasso

    2011-08-01

    Full Text Available The importance of energy crops in displacing fossil fuels within the energy sector in Europe is growing. Among energy crops, the use of perennial rhizomatous grasses (PRGs seems promising owing to their high productivity and their nutrient recycling that occurs during senescence. In particular, nutrient requirements and biomass quality have a fundamental relevance to biomass systems efficiency. The objective of our study was to compare giant reed (Arundo donax L. and miscanthus (Miscanthus × giganteus Greef et Deuter in terms of nutrient requirements and cellulose, hemicelluloses and lignin content. This aim was to identify, in the Mediterranean environment, the optimal harvest time that may combine, beside a high biomass yield, high nutrient use efficiency and a good biomass quality for second generation biofuel production. The research was carried out in 2009, in San Piero a Grado, Pisa (Central Italy; latitude 43°41’ N, longitude 10°21’ E, on seven-year-old crops in a loam soil characterised by good water availability. Maximum above-ground nutrient contents were generally found in summer. Subsequently, a decrease was recorded; this suggested a nutrient remobilisation from above-ground biomass to rhizomes. In addition, miscanthus showed the highest N, P, and K use efficiency, probably related to its higher yield and its C4 pathway. Regarding biomass quality, stable values of cellulose (38%, hemicelluloses (25% and lignin (8% were reported from July onwards in both crops. Hence, these components appear not to be discriminative parameters in the choice of the harvest time in the Mediterranean environment. In conclusion, our results highlighted that, in our environment, a broad harvest period (from late autumn to winter seems suitable for these PRGs. However, further research is required to evaluate the role of rhizomes in nutrient storage and supply during the growing season, as well as ecological and productive performances in marginal

  2. Fast heating of fuel assembled in a spherical deuterated polystyrene shell target by counter-irradiating tailored laser pulses delivered by a HAMA 1 Hz ICF driver

    Science.gov (United States)

    Mori, Y.; Nishimura, Y.; Hanayama, R.; Nakayama, S.; Ishii, K.; Kitagawa, Y.; Sekine, T.; Takeuchi, Y.; Kurita, T.; Satoh, N.; Kawashima, T.; Komeda, O.; Nishi, T.; Azuma, H.; Hioki, T.; Motohiro, T.; Sunahara, A.; Sentoku, Y.; Miura, E.

    2017-11-01

    Fast heating is a method of heating an assembled high-density plasma into a hot state by irradiating it with short-duration (sub-picosecond), high-intensity (> 1018 W cm-2 ) laser pulses before the plasma expands and dissolves hydrodynamically. In this paper, we present detailed experimental results of fast heating fuel assembled in a spherical deuterated polystyrene shell target of 500 μ m diameter and 7 μm thickness with counterbeam illumination by using a HAMA 1 Hz, 5.9 J inertial confinement fusion laser driver with pulse tailoring. These tailored pulses contain three pulses in sequence: a ‘foot’ pulse of 2.4 J/25 ns, a ‘spike’ pulse of 0.5 J/300 ps and a ‘heater’ pulse of 0.4 J/110 fs; these pulses are designed to assemble the fuel and heat it. By varying the energy of the foot pulse, we find that fast heating the fuel is achieved only if the fuel is weakly ablated by the foot pulse and then shock-assembled by the spike pulse into the target centre so that the heater pulse can access the fuel with a focal intensity greater than 1018 W cm-2 . Without a foot pulse, the heater pulse contributes to assembling the fuel. For higher foot-pulse energies, the heater pulse drives a hydrodynamic motion with speeds of the order 107 cm s-1 with intensities of the order 1017 W cm-2 , resulting in re-assembling and additional heating of the pre-assembled fuel. Once a shock-assembled core is achieved at the target centre, we succeed qualitatively in fast heating the core for shots in sequence with variations of laser energy within 18%. The coupling efficiency from the heating laser to the core is inferred to be (10 +/- 2) % in total: (8 +/- 1.6) % for the ionized bulk electrons and (2 +/- 0.4) % for the bulk ions. The fusion neutron spectrum detected on the laser axis exhibits peaks at 1.0 MeV, 1.7 MeV and 3.8 MeV. These peaks are attributed to the C(d, n){\\hspace{0pt}}13 N and d(d, n){\\hspace{0pt}}3 He reactions induced by counterpropagating fast deuterons

  3. Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering

    Directory of Open Access Journals (Sweden)

    Rina Yogo

    2017-12-01

    Full Text Available A recently developed integrative approach combining varied types of experimental data has been successfully applied to three-dimensional modelling of larger biomacromolecular complexes. Deuteration-assisted small-angle neutron scattering (SANS plays a unique role in this approach by making it possible to observe selected components in the complex. It enables integrative modelling of biomolecular complexes based on building-block structures typically provided by X-ray crystallography. In this integrative approach, it is important to be aware of the flexible properties of the individual building blocks. Here we examine the ability of SANS to detect a subtle conformational change of a multidomain protein using the Fc portion of human immunoglobulin G (IgG interacting with a soluble form of the low-affinity Fcγ receptor IIIb (sFcγRIIIb as a model system. The IgG-Fc glycoprotein was subjected to SANS in the absence and presence of 75%-deuterated sFcγRIIIb, which was matched out in D2O solution. This inverse contrast-matching technique enabled selective observation of SANS from IgG-Fc, thereby detecting its subtle structural deformation induced by the receptor binding. The SANS data were successfully interpreted by considering previously reported crystallographic data and an equilibrium between free and sFcγRIIIb-bound forms. Our SANS data thus demonstrate the applicability of SANS in the integrative approach dealing with biomacromolecular complexes composed of weakly associated building blocks with conformational plasticity.

  4. Selective formation of trans-2-butene-1,4-d2 and (E)-2-methyl-2-butene-1,4-d2 in deuteration of 1,3-butadiene derivatives over thorium oxide catalyst

    International Nuclear Information System (INIS)

    Imizu, Y.; Tanabe, K.; Hattori, H.

    1979-01-01

    Stereoselective hydrogenations of 1,3-butadiene and 2-methyl-1,3-butadiene over thorium oxide catalyst were investigated to elucidate the intermediates of the reactions. Hydrogenation of 1,3-butadiene produced predominantly trans-2-butene. Deuterium tracer studies provided direct evidence that 1,4-addition was a dominant mechanism. Deuteration of 1,3-butadiene yielded exclusively monoenes-d 2 , while no deuterium was exchanged with hydrogen in 1,3-butadiene. Deuteration of 2-methyl-2-butene gave mainly (E)-2-methyl-2-butene-1,4-d 2 . For both reactants, most stable conformations of starting diens (s-trans form) were reflected on the structure of the products. The geometrical structures as well as molecular identity of a hydrogen molecule were maintained during hydrogenation. Reaction of a mixture containing 1-butene and 1,3-butadiene-d 6 in the presence of hydrogen revealed that 1-butene and 1,3-butadiene independently underwent isomerization and hydrogenation, respectively. The nature of their active sites is discussed. Key intermediate of the hydrogenation of conjugated diene is postulated to be the syn form of methyl- or dimethyl-π-allyl carbanion which is hydrogenated before interconverting to their isomeric anti form of the π-allyl carbanion. 5 figures, 6 tables

  5. Proton glass behaviour in a solid solution of gamma-irradiated deuterated betaine phosphate sub 0 sub . sub 1 sub 5 betaine phosphite sub 0 sub . sub 8 sub 5

    CERN Document Server

    Banys, J; Klimm, C; Voelkel, G; Kloepperpieper, A

    1997-01-01

    Measurements of the dielectric permittivity are reported for a deuterated solid solution of gamma-irradiated antiferroelectric (betainephosphate) sub 0 sub . sub 1 sub 5 ferroelectric (betainephosphite) sub 0 sub . sub 8 sub 5 at frequencies 20 H sub Z

  6. Combined crossed molecular beam and ab initio investigation of the reaction of boron monoxide (BO; X(2)Σ(+)) with 1,3-butadiene (CH2CHCHCH2; X(1)Ag) and its deuterated counterparts.

    Science.gov (United States)

    Maity, Surajit; Dangi, Beni B; Parker, Dorian S N; Kaiser, Ralf I; Lin, Hong-Mao; E, Hai-Ping; Sun, Bing-Jian; Chang, A H H

    2015-02-19

    The reactions of the boron monoxide ((11)BO; X(2)Σ(+)) radical with 1,3-butadiene (CH2CHCHCH2; X(1)Ag) and its partially deuterated counterparts, 1,3-butadiene-d2 (CH2CDCDCH2; X(1)Ag) and 1,3-butadiene-d4 (CD2CHCHCD2; X(1)Ag), were investigated under single collision conditions exploiting a crossed molecular beams machine. The experimental data were combined with the state-of-the-art ab initio electronic structure calculations and statistical RRKM calculations to investigate the underlying chemical reaction dynamics and reaction mechanisms computationally. Our investigations revealed that the reaction followed indirect scattering dynamics through the formation of (11)BOC4H6 doublet radical intermediates via the barrierless addition of the (11)BO radical to the terminal carbon atom (C1/C4) and/or the central carbon atom (C2/C3) of 1,3-butadiene. The resulting long-lived (11)BOC4H6 intermediate(s) underwent isomerization and/or unimolecular decomposition involving eventually at least two distinct atomic hydrogen loss pathways to 1,3-butadienyl-1-oxoboranes (CH2CHCHCH(11)BO) and 1,3-butadienyl-2-oxoboranes (CH2C ((11)BO)CHCH2) in overall exoergic reactions via tight exit transition states. Utilizing partially deuterated 1,3-butadiene-d2 and -d4, we revealed that the hydrogen loss from the methylene moiety (CH2) dominated with 70 ± 10% compared to an atomic hydrogen loss from the methylidyne group (CH) of only 30 ± 10%; these data agree nicely with the theoretically predicted branching ratio of 80% versus 19%.

  7. Report on the Sixth International Symposium on Isotopomers

    Energy Technology Data Exchange (ETDEWEB)

    Bao, H. [Louisiana State Univ., Baton Rouge, LA (United States); Farquhar, J. [Univ. of Maryland, College Park, MD (United States); Rumble, D. [Carnegie Inst. of Washington, Argonne, IL (United States). Geophysical Lab.

    2016-05-11

    The ISI 2012 met in Washington, DC, 18-22 June 2012, bringing together researchers and their students spanning an unusually wide range of disciplines including quantum and physical chemistry, cosmochemistry, atmospheric chemistry, chemical oceanography, biogeochemistry, organic and inorganic geochemistry. The diversity of subject matter was matched geographically with 92 attendees hailing from Canada, China, Finland, France, Germany, India, Israel, Japan, the Netherlands, Russia, Switzerland, Taiwan, the United Kingdom, and the USA. Although diverse, the group was united in its commitment to use the light stable isotopes of H, C, N, O, and S, with their equilibrium, kinetic, and intramolecular fractionations, to understand the material cycles and their dynamics between atmosphere, biosphere, hydrosphere, and lithosphere that make life possible on Earth. A distinct benefit of a small meeting like ISI 2012 is the opportunity for everyone to talk to each other. The historic rooms of the Carnegie Institution of Washington offered a cozy and warm atmosphere for participants in ISI 2012 to talk science and life in a casual, relaxed, and in-depth fashion. Graduate students and postdoctoral researchers were particularly appreciative of being able to spend five days together with old and new colleagues in comfortable quarters. Many commented that they had gained a lot more in building their life-long working relationships with colleagues at this meeting than at larger meetings.

  8. CO and its Isotopomers Observation towards Sgr B2

    Indian Academy of Sciences (India)

    Since January 2016, the Journal of Astrophysics and Astronomy has moved to Continuous Article Publishing (CAP) mode. This means that each accepted article is being published immediately online with DOI and article citation ID with starting page number 1. Articles are also visible in Web of Science immediately.

  9. Low-resolution structure of the tetrameric phenylalanyl-tRNA synthetase from Escherichia coli. A neutron small-angle scattering study of hybrids composed of protonated and deuterated protomers

    International Nuclear Information System (INIS)

    Dessen, P.; Ducruix, A.; May, R.P.; Blanquet, S.

    1990-01-01

    Escherichia coli phenylalanyl-tRNA synthetase is a tetrameric protein composed of two types of protomers. In order to resolve the subunit organization, neutron small-angle scattering experiments have been performed in different contrasts with all types of isotope hybrids that could be obtained by reconstituting the alpha 2 beta 2 enzyme from the protonated and deuterated forms of the alpha and beta subunits. Experiments have been also made with the isolated alpha promoter. A model for the alpha 2 beta 2 tetramer is deduced where the two alpha promoters are elongated ellipsoids (45 x 45 x 160 A3) lying side by side with an angle of about 40 degrees between their long axes and where the two beta subunits are also elongated ellipsoids (31 x 31 x 130 A3) with an angle of 30 degrees between their axes. This model was obtained by assuming that the two pairs of subunits are in contact in an orthogonal manner and by taking advantage of the measured distance between the centers of mass of the alpha 2 and beta 2 pairs (d = 23 +/- 2 A)

  10. {sup 15}N and {sup 13}C- SOFAST-HMQC editing enhances 3D-NOESY sensitivity in highly deuterated, selectively [{sup 1}H,{sup 13}C]-labeled proteins

    Energy Technology Data Exchange (ETDEWEB)

    Rossi, Paolo, E-mail: rossip@umn.edu; Xia, Youlin; Khanra, Nandish; Veglia, Gianluigi, E-mail: vegli001@umn.edu; Kalodimos, Charalampos G., E-mail: ckalodim@umn.edu [University of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics (United States)

    2016-12-15

    The ongoing NMR method development effort strives for high quality multidimensional data with reduced collection time. Here, we apply ‘SOFAST-HMQC’ to frequency editing in 3D NOESY experiments and demonstrate the sensitivity benefits using highly deuterated and {sup 15}N, methyl labeled samples in H{sub 2}O. The experiments benefit from a combination of selective T{sub 1} relaxation (or L-optimized effect), from Ernst angle optimization and, in certain types of experiments, from using the mixing time for both NOE buildup and magnetization recovery. This effect enhances sensitivity by up to 2.4× at fast pulsing versus reference HMQC sequences of same overall length and water suppression characteristics. Representative experiments designed to address interesting protein NMR challenges are detailed. Editing capabilities are exploited with heteronuclear {sup 15}N,{sup 13}C-edited, or with diagonal-free {sup 13}C aromatic/methyl-resolved 3D-SOFAST-HMQC–NOESY–HMQC. The latter experiment is used here to elucidate the methyl-aromatic NOE network in the hydrophobic core of the 19 kDa FliT-FliJ flagellar protein complex. Incorporation of fast pulsing to reference experiments such as 3D-NOESY–HMQC boosts digital resolution, simplifies the process of NOE assignment and helps to automate protein structure determination.

  11. Thermal behavior of J-aggregates in mixed Langmuir-Blodgett films composed of merocyanine dye and deuterated arachidic acid investigated by UV-visible and infrared absorption spectroscopy.

    Science.gov (United States)

    Hirano, Yoshiaki; Tateno, Shinsuke; Ozaki, Yukihiro

    2007-06-19

    We have investigated the thermal behavior of J-aggregates in the mixed Langmuir-Blodgett (LB) films composed of the merocyanine dye (MS18)-deuterated arachidic acid (C20-d) binary system in the temperature range from 25 to 250 degrees C by means of UV-visible and IR transmission absorption spectroscopy. The temperature-dependent variations in both UV-visible and IR absorption spectra indicate that the MS18 aggregation states are linked with the MS18 intramolecular charge transfer and the behavior of the packing, orientation, conformation, and thermal mobility of the MS18 hydrocarbon chain. The J-aggregate formed at 25 degrees C in the mixed LB films dissociates in the temperature range from 25 to 110 degrees C, which is mainly ascribed to the increase in the thermal mobility of MS18 hydrocarbon chain and the dissociation of the chelation by a cadmium ion to the MS18 keto group. A thermally induced blue-shifted band appears at around 515 nm from 110 to 160 degrees C. This band is attributed to oligomeric aggregation with side-by-side alignment of the MS18 transition dipole moments on the basis of the shift to a higher-energy side, broadening, and temporary increment of the MS18 intramolecular charge transfer of the band. Consequently, the appearance of the thermally induced blue-shifted band indicates the possibility that the MS18 aggregation states can be controlled from the red shift to the blue shift by the annealing method adopted in the present study.

  12. Synthesis and reactions of deuterated 2-(alkylimino)-3-nitrosooxazolidines, 3-alkly-1-(2-hydroxyethyl)-1-nitrosoureas, and related compounds as possible intermediates in the aqueous decomposition of 3-alkyl-1-(2-chloroethyl)-1-nitrosoureas

    International Nuclear Information System (INIS)

    Lown, J.W.; Chauhan, S.M.S.

    1981-01-01

    Decomposition of 1-(2-chloroethyl)-3-cyclohexyl-1-nitrosourea-α-d 2 (CCNU-α-d 2 ) (7) in pH 7.2 phosphate buffer or of CINO-α-d 2 (9) or CHNU-α-d 2 (8) with the addition of chloride ion gives rise to the same spectrum of products, including deuterium-free acetaldehyde (29), a mixture of the two deuterio-2-chloroethanols, 2-hydroxy-2,2-dideuterioethyl cyclohexyl carbamates, and vinyl chloride containing one deuterium (i.e., opposite the results obtained in the corresponding reaction of BCNU-α-d 4 ). The products were identified and the number and position of the deuterium labels determined by GC/MS. The results are interpreted in terms of two decomposition pathways for CCNU. The first decomposition pathway operating for CCNU is via an intermediate-2-chloroethanediazohydroxide or the equivalent 2-chloroethyl cation in agreement with the results of other workers. The second pathway may involve reversible conversion of CCNU-α-d 2 (7) to CINO-α-d 2 (9) and then ring opening of the latter to CHNU-α-d 2 (8). Independent decomposition of 8 provides evidence for its conversion to a 1.1-dideuterio-2-hydroxyethanediazohydroxide (41) leading to the isolated carbamates 36 and 44. The intermediacy of species 41 may account for the formation of 2-hydroxyethylated nucleosides observed when (2-chloroethyl)nitrosoureas react with DNA. An alternative ring-opening reaction of 9 leads to a 2-hydroxydiazoethyl cyclohexylcarbamate species (37), elimination of which and attack by halide ion may account for the vinyl halide species formed. Further evidence in support of these competing pathways employing additional specifically deuterated intermediates is described and discussed

  13. Tracing lipogenesis in humans using deuterated water

    International Nuclear Information System (INIS)

    Jones, P.J.H.

    1996-01-01

    Determination of quantitative de novo fat synthesis rates is important in our understanding of the role of nutritional factors in macronutient utilization and obesity development. To address these questions, we developed and applied a method for measuring lipogenesis using the uptake of deuterium enrichment in plasma very light density lipoprotein (VLDL) TGFA relative to the maximum as indicative of the fraction of VLDL-TGFA synthesized. Plateau enrichment was observed after 12 h of prime-constant oral deuterium oxide administration. Our initial studies applied this model in healthy humans consuming typical diets to demonstrate rates of TGFA synthesis amounting to 2 g·day -1 . In subsequent experiments it was shown that this level of synthesis was not affected by the frequency with which daily meals were consumed. Furthermore, in a clinical application, our results using this approach demonstrated that compared with normolipidemic controls, individuals with type III hyperlipoproteinemia displayed elevated TGFA but normal cholesterol synthesis rates. In summary, compared with other available methods for determination of lipogenesis, deuterium uptake is safe, direct, and inexpensive. Results suggest that under most dietary circumstances, human de novo lipogenesis is minor, thus dietary fat and carbohydrate balances remain largely independent. (author). 35 refs., 2 tabs., 4 figs

  14. Neutron scattering on partially deuterated polybutadiene

    CERN Document Server

    Kahle, S; Monkenbusch, M; Richter, D; Arbe, A; Colmenero, J; Frick, B

    2002-01-01

    The molecular nature of the secondary relaxation (Johari-Goldstein relaxation) and its relationship with the alpha relaxation is in most cases still unknown. In order to access these processes on a molecular level, it is necessary to obtain spatial information of the relaxation. Through the momentum-transfer dependence of the dynamic structure factor S(Q,t), this information can be provided by quasielastic neutron scattering techniques. The large difference in scattering lengths between hydrogen and deuterium allows us to accentuate specific correlations between atoms in a polymer melt. Here, we report on recent results on a polybutadiene melt, where the double bond was hydrogeneous, while the methylene groups carried deuterons (d4h2-PB). In this way the correlations between the double bonds are emphasised. We will show that the double bond/double bond correlation function, generated in this way, shows the same temperature dependence as the viscosity at higher temperatures at the structure factor peak maximum...

  15. Convenient synthesis of deuterated aluminium hydrides

    Energy Technology Data Exchange (ETDEWEB)

    Pawelke, Roland H.; Felderhoff, Michael; Weidenthaler, Claudia [Max-Planck-Institut fuer Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Muelheim an der Ruhr (Germany); Schueth, Ferdi [Max-Planck-Institut fuer Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Muelheim an der Ruhr (Germany)], E-mail: schueth@mpi-muelheim.mpg.de

    2008-09-15

    We describe the ball-milling synthesis of alkali metal deuterides from commercial lithium aluminium deuteride. This reaction principle was exemplified by the mechanochemical synthesis of NaAlD{sub 4} and KAlD{sub 4}. NaAlD{sub 4} was prepared on the multi-gram scale by this procedure and purified by standard wet-chemical separation. Pure NaAlD{sub 4} was obtained and used for the synthesis of Ca(AlD{sub 4}){sub 2}. The formation of all products was verified by X-ray diffraction.

  16. Data acquisition system for a deuteration chamber

    International Nuclear Information System (INIS)

    Monroy A, L.

    1994-01-01

    The work present is focusing auxiliary in the experiment the reaction of fusion in cold in the laboratory of Physical of Plasmas of Instituto Nacional de Investigaciones Nucleares. These systems of acquisition of data concrete to register in line surface of pressure and temperature in the gap of 5.6 x 10 -4 to 1 x 10 3 and -270 to 1300 Centigrade degrees with help of personal computer. The manner of purchase in chamber of Deuterium is per middle of thermocouple with the object of whereas any control of the temperature in different point in the some of manner the signal of in for the system is the thermocouple (milli volts), the conversion analogy a digital is mean of Cad of 12 bits rate double slope the out is mean the PPI to send the signal to P C of these manner the read of the thermocouples is translate graphic or digital in the screen of the P C. In the phase of pressure element sensor is measure type Pirani, the measure is of manner of temperature. (Author)

  17. X-ray and neutron powder diffraction analyses of Gly·MgSO4·5H2O and Gly·MgSO4·3H2O, and their deuterated counterparts.

    Science.gov (United States)

    Howard, Christopher; Wood, Ian G; Knight, Kevin S; Fortes, A Dominic

    2016-03-01

    We have identified a new compound in the glycine-MgSO4-water ternary system, namely glycine magnesium sulfate trihydrate (or Gly·MgSO4·3H2O) {systematic name: catena-poly[[tetraaquamagnesium(II)]-μ-glycine-κ(2)O:O'-[diaquabis(sulfato-κO)magnesium(II)]-μ-glycine-κ(2)O:O']; [Mg(SO4)(C2D5NO2)(D2O)3]n}, which can be grown from a supersaturated solution at ∼350 K and which may also be formed by heating the previously known glycine magnesium sulfate pentahydrate (or Gly·MgSO4·5H2O) {systematic name: hexaaquamagnesium(II) tetraaquadiglycinemagnesium(II) disulfate; [Mg(D2O)6][Mg(C2D5NO2)2(D2O)4](SO4)2} above ∼330 K in air. X-ray powder diffraction analysis reveals that the trihydrate phase is monoclinic (space group P21/n), with a unit-cell metric very similar to that of recently identified Gly·CoSO4·3H2O [Tepavitcharova et al. (2012). J. Mol. Struct. 1018, 113-121]. In order to obtain an accurate determination of all structural parameters, including the locations of H atoms, and to better understand the relationship between the pentahydrate and the trihydrate, neutron powder diffraction measurements of both (fully deuterated) phases were carried out at 10 K at the ISIS neutron spallation source, these being complemented with X-ray powder diffraction measurements and Raman spectroscopy. At 10 K, glycine magnesium sulfate pentahydrate, structurally described by the `double' formula [Gly(d5)·MgSO4·5D2O]2, is triclinic (space group P-1, Z = 1), and glycine magnesium sulfate trihydrate, which may be described by the formula Gly(d5)·MgSO4·3D2O, is monoclinic (space group P21/n, Z = 4). In the pentahydrate, there are two symmetry-inequivalent MgO6 octahedra on sites of -1 symmetry and two SO4 tetrahedra with site symmetry 1. The octahedra comprise one [tetraaquadiglcyinemagnesium](2+) ion (centred on Mg1) and one [hexaaquamagnesium](2+) ion (centred on Mg2), and the glycine zwitterion, NH3(+)CH2COO(-), adopts a monodentate coordination to Mg2. In the

  18. Advances in the MQDT approach of electron/molecular cation reactive collisions: High precision extensive calculations for applications

    Directory of Open Access Journals (Sweden)

    Motapon O.

    2015-01-01

    Full Text Available Recent advances in the stepwise multichannel quantum defect theory approach of electron/molecular cation reactive collisions have been applied to perform computations of cross sections and rate coefficients for dissociative recombination and electron-impact ro-vibrational transitions of H2+, BeH+ and their deuterated isotopomers. At very low energy, rovibronic interactions play a significant role in the dynamics, whereas at high energy, the dissociative excitation strongly competes with all other reactive processes.

  19. Electrical Conduction in Deuterated Ammonium Dihydrogen Phosphate Crystals with Different Degrees of Deuteration

    Science.gov (United States)

    Zhu, Li-Li; Gan, Xiao-Yu; Zhang, Qing-Hua; Liu, Bao-An; Xu, Ming-Xia; Zhang, Li-Song; Xu, Xin-Guang; Gu, Qing-Tian; Sun, Xun

    2015-05-01

    Not Available Supported by the National Natural Science Foundation of China under Grant Nos 51323002 and 51402173, the Independent Innovation Foundation of Shandong University under Grant No 2012JC016, the Natural Science Foundation for Distinguished Young Scholar of Shandong Province under Grant No JQ201218, and the Project of Key Laboratory of Neutron Physics of China Academy Of Engineering Physics under Grant No 2014BB07.

  20. Evaluation of deuterated cholesterol and deuterated sitostanol for measurement of cholesterol absorption in humans.

    Science.gov (United States)

    Lütjohann, D; Meese, C O; Crouse, J R; von Bergmann, K

    1993-06-01

    The continuous isotope feeding method of Crouse and Grundy (1978. J. Lipid Res. 19: 967-971) for measurement of dietary cholesterol absorption has been modified by using markers labeled with stable isotopes ([2,2,4,4,6-2H5]cholesterol or [25,26,26,26,27,27,27-2H4]cholesterol or [26,26,26,27,27,27-2H6] cholesterol and [5,6,22,23-2H4]sitostanol) quantified by gas-liquid chromatography-selected ion monitoring. Tracing of the isotope distribution of the authentic markers and after their intestinal passage, including the microbiological products (coprostanol and coprostanone) revealed stability of the labels. The new method was evaluated in six monkeys on two occasions by comparison with the original method using radioactively labeled cholesterol and sitosterol. The results obtained by the two different methods were in excellent agreement, and absorption ranged from 49% to 73% (mean 60%) for the stable isotope method and from 51% to 69% (mean 62%) for the radioactive method. The coefficient of variation of cholesterol absorption in animals ranged from 3.9% to 15.1% (mean 7.1%) for stable isotopes and 1.9% to 13.6% (mean 5.7%) for radioactive isotopes. In twelve subjects cholesterol absorption was measured by the new method from total fecal samples frozen immediately and compared to results obtained from small fecal aliquots (approximately 1 g) sent by ordinary mail to the laboratory. A significant correlation of cholesterol absorption between the two different sample handlings was obtained (r = 0.981, P < 0.001). In addition, measurement of cholesterol absorption twice in seven volunteers 2 weeks apart revealed identical results. Thus, the new method is extremely safe and reproducible without radioactive exposure to the subjects and labortory staff and can be used on women of child-bearing age.

  1. Deuterium fractionation on interstellar grains studied with modified rate equations and a Monte Carlo approach

    Science.gov (United States)

    Caselli, Paola; Stantcheva, Tatiana; Shalabiea, Osama; Shematovich, Valery I.; Herbst, Eric

    2002-10-01

    The formation of singly and doubly deuterated isotopomers of formaldehyde and of singly, doubly, and multiply deuterated isotopomers of methanol on interstellar grain surfaces has been studied with a semi-empirical modified rate approach and a Monte Carlo method in the temperature range 10- 20 K. Agreement between the results of the two methods is satisfactory for all major and many minor species throughout this range. If gas-phase fractionation can produce a high abundance of atomic deuterium, which then accretes onto grain surfaces, diffusive surface chemistry can produce large abundances of deuterated species, especially at low temperatures and high gas densities. Warming temperatures will then permit these surface species to evaporate into the gas, where they will remain abundant for a considerable period. We calculate that the doubly deuterated molecules CHD 2OH and CH 2DOD are particularly abundant and should be searched for in the gas phase of protostellar sources. For example, at 10 K and high density, these species can achieve up to 10-20% of the abundance of methanol.

  2. CO and its Isotopomers Observation towards Sgr B2 L. L. Sun1, J. S. ...

    Indian Academy of Sciences (India)

    1991; Rodriguez-Fernandez & Combes 2008). Isotope ratios are considered to be a good tool to discriminate between gas flowing towards the disk and gas already residing in the disk of the central galactic plane. (Riquelme et al. 2010). A systematic study is performed on isotope abundance ratio of 18O to 17O of the ...

  3. Reliable Spectroscopic Constants for CCH-, NH2- and Their Isotopomers from an Accurate Potential Energy Function

    Science.gov (United States)

    Lee, Timothy J.; Dateo, Christopher E.; Schwenke, David W.; Chaban, Galina M.

    2005-01-01

    Accurate quartic force fields have been determined for the CCH- and NH2- molecular anions using the singles and doubles coupled-cluster method that includes a perturbational estimate of the effects of connected triple excitations, CCSD(T). Very large one-particle basis sets have been used including diffuse functions and up through g-type functions. Correlation of the nitrogen and carbon core electrons has been included, as well as other "small" effects, such as the diagonal Born-Oppenheimer correction, and basis set extrapolation, and corrections for higher-order correlation effects and scalar relativistic effects. Fundamental vibrational frequencies have been computed using standard second-order perturbation theory as well as variational methods. Comparison with the available experimental data is presented and discussed. The implications of our research for the astronomical observation of molecular anions will be discussed.

  4. Fundamental Study on the Separation of Methane Isotopomer by Cryogenic Distillation

    Energy Technology Data Exchange (ETDEWEB)

    Song, K.M.; Lee, S.K.; Kim, K.S.; Kim, W.S. [Korea Electric Power Research Institute, Taejon (Korea)

    2002-07-01

    For the purpose of {sup 13}CH{sub 4} production from LNG, the state art of the application of C-13 and the marketing research were investigated. The theoretical number of stages and the number of distillation column required for the separation of {sup 13}CH{sub 4} from {sup 12}CH{sub 4}/{sup 13}CH{sub 4} mixture containing 1%-{sup 13}CH{sub 4} are calculated. Assuming the ideal liquid mixture of {sup 12}CH{sub 4} and {sup 13}CH{sub 4}, the theoretical number of stages are calculated the minimum theorical number of stages are calculated by Smoker equation and FUG method. Using the correlation between the minimum theoretical number of stages and the optimum theoretical number of stages, the number of distillation groups is obtained. From the simulation, we postulate that 6 groups of distillation tower having 600 stages per one column are needed for the production of 90%-{sup 13}CH{sub 4}. (author). 18 refs., 33 figs., 9 tabs.

  5. Structural characterization of a mixed Langmuir-Blodgett film of a merocyanine dye derivative-deuterated arachidic acid binary system and the influence of successive hydrothermal treatment in the liquid phase on the film as investigated by polarized UV-visible and IR absorption spectroscopy.

    Science.gov (United States)

    Hirano, Yoshiaki; Yamazaki, Asuka; Maio, Ari; Kitahama, Yasutaka; Ozaki, Yukihiro

    2010-08-26

    We have investigated the structure of the mixed Langmuir-Blodgett (LB) film of a merocyanine dye derivative (MO(18))-deuterated arachidic acid (C(20)-d) binary system and the influence of successive hydrothermal treatment in the liquid phase (HTTL) on the mixed LB film by means of polarized UV-visible and IR absorption spectroscopy. The visible absorption band with in-plane anisotropy at 503 nm before HTTL transforms into an absorption band with in-plane isotropy at 557 nm after HTTL for 16-18 min through a peak maximum near 520 nm after HTTL for 2-12 min. The degree of total MO(18) intramolecular charge transfer for the 503 nm band is the largest among those for all of the bands. Therefore, the 503 nm band is ascribed to the MO(18) H-like aggregation, based on its shape, peak height, and in-plane anisotropy, the subsequent change to two kinds of visible peaks by successive HTTL, and the most degree of MO(18) intramolecular charge transfer among all of the aggregation states. While the MO(18) hydrocarbon chain takes the all-trans conformation before HTTL, its conformation and orientation are most disarranged after HTTL for 2 min. Subsequently, the original conformation and orientation are recovered by degrees with successive HTTL, except after final HTTL for 18 min, when the orientation is again changed. On the other hand, the C(20)-d hydrocarbon chain maintains the all-trans conformation before and after HTTL. The orientation of the C(20)-d hydrocarbon chain after HTTL for 2 min is more ordered than that before HTTL, with the nature of the C(20)-d subcell packing changing from hexagonal to orthorhombic. During successive HTTL from 2 to 18 min, the C(20)-d orientation is gradually disorganized but with the orthorhombic nature remaining constant. Thus, the variations in the conformation and orientation of the MS(18) hydrocarbon chain and in the orientation of the C(20)-d hydrocarbon chain tend to change from ordered and disordered structures and turn to more

  6. magnetooptical phenomena in microcrystal suspensions of deuterated aromatic compounds

    Energy Technology Data Exchange (ETDEWEB)

    Spartakov, A.A.; Tolstoi, N.A. [St. Petersburg State Univ., Peterhof (Russian Federation)

    1995-11-01

    Magnetooptical studies of microcrystal suspensions of aromatic molecules containing polycondensed benzene rings with deuterium atoms substituted for hydrogen atoms showed that the new type of magnetism (aromagnetism) that was found in microcrystals of usual (undeuterated) aromatic compounds cannot be explained by the magnetic ordering of nuclear spins in these microcrystals. 4 refs., 1 fig.

  7. Study of the degree of deuteration on the microhardness of ...

    Indian Academy of Sciences (India)

    ous solution in standard 5000 ml glass crystallizers by the rapidly temperature reduction method. ... rapidly stored in a sealed glass vessel with silica gel in it. The microhardness parameters were determined using a digital ... layer of the surface machined from incision to grinding and polishing, which could lead to the higher ...

  8. Study of the degree of deuteration on the microhardness of ...

    Indian Academy of Sciences (India)

    Initially the hardness number of (001) face for each crystal increases with the increase of the applied load until it reaches 25 g. ... of Crystal Materials, Shandong University, Jinan 250100, PR China; Administration Center, Shandong Academy of Information and Communication Technology, Jinan 250101, PR China ...

  9. Soft mode and acoustic mode ferroelectric properties of deuterated ...

    Indian Academy of Sciences (India)

    Double-time temperature dependent Green's function is used to derive soft mode frequency, dielectric permittivity, microwave absorption, quality factor, acoustic attenuation, electric conductivity, smooth function, relaxation time, ratio of figure of merits and respective applications in modern technologies. All theoretical results ...

  10. Study of the degree of deuteration on the microhardness of ...

    Indian Academy of Sciences (India)

    laser systems.1 DKDP crystals are usually used for the third harmonic generation ... entated by X-ray diffraction with accuracy in ±7. ◦ and fine polished .... Baoan Liu et al. Figure 4. Variation of the work hardening index n with molar concentration x. KH2PO4 is lower than that of K(H0.15D0.85)2PO4. This indi- cates that the ...

  11. Convenient synthesis of protiated and specifically deuterated secondary azoalkanes

    International Nuclear Information System (INIS)

    Grizzle, P.L.; Miller, D.W.; Scheppele, S.E.

    1975-01-01

    A convenient synthesis of secondary azo compounds is reported. The method involves addition of chlorine to the azine or hydrazone in CH 2 Cl 2 followed by reduction of the dichloro- or chloroazoalkane with LiAlH 4 or LiAlD 4 in ether. The preparation of a variety of symmetrical secondary azoalkanes demonstrates the applicability of the technique. The procedure is applicable to the synthesis of (sec-alkylazo)alkanes and presumably of (sec-alkylazo)-2,4,6-trichlorobenzenes. The isotope purity of the azoalkane is fixed by that of the azine or hydrazone precursor and of the LiAlD 4 . (U.S.)

  12. Deuteration of triborane(7) adducts with anhydrous deuterium chloride

    International Nuclear Information System (INIS)

    Dodds, A.R.; Kodama, G.

    1977-01-01

    A hydrogen-deuterium exchange reaction between triborane(7) adducts and deuterium chloride is reported which involves all the hydrogen atoms in the B 3 H 7 moiety and proceeds rapidly even at low temperatures. The exchange reaction is reported to proceed much faster in dichloromethane solution than in tetrahydrofuran

  13. Dispersion of low frequency vibrations in the deuterated naphthalene crystal

    International Nuclear Information System (INIS)

    Bokhenkov, E.L.; Sheka, E.; Natkaniec, I.

    1977-01-01

    The dispersion curves of the lattice vibrations and of the two lowest intramolecular vibrations in d 8 -naphthalene (C 10 D 8 ) crystal have been measured by coherent inelastic neutron scattering for the [010] and the [100] directions at the temperature of 98 K and partially at 5 K. The results are compared with calculations based on the Kitaigorodskii parameters for C-C, C-H and H-H interactions in organic molecular crystals. (author)

  14. X-ray structure determination and deuteration of nattokinase.

    OpenAIRE

    Yanagisawa, Yasuhide; Chatake, Toshiyuki; Naito, Sawa; Ohsugi, Tadanori; Yatagai, Chieko; Sumi, Hiroyuki; Kawaguchi, Akio; Chiba-Kamosida, Kaori; Ogawa, Megumi; Adachi, Tatsumi; Morimoto, Yukio

    2013-01-01

    Nattokinase (NK) is a strong fibrinolytic enzyme, which is produced in abundance by Bacillus subtilis natto. Although NK is a member of the subtilisin family, it displays different substrate specificity when compared with other subtilisins. The results of molecular simulations predict that hydrogen arrangements around Ser221 at the active site probably account for the substrate specificity of NK. Therefore, neutron crystallographic analysis should provide valuable information that reveals the...

  15. Magnetic behavior of cobalt bromide hydrates including a deuterated form

    Energy Technology Data Exchange (ETDEWEB)

    DeFotis, G.C., E-mail: gxdefo@wm.edu; Hampton, A.S.; Van Dongen, M.J.; Komatsu, C.H.; DeSanto, C.L.; Davis, C.M.

    2017-04-15

    The magnetic properties of little examined CoBr{sub 2}• 2H{sub 2}O and new CoBr{sub 2}• H{sub 2}O and CoBr{sub 2}• D{sub 2}O are studied. Curie-Weiss fits, χ{sub M}=C/(T-θ), yield θ of −9.9, 9.4 and 10.0 K, respectively, over a 30–80 K linear range for each. Higher temperature data are fit assuming two moderately separated low lying Kramers doublets, with exchange accounted for in a mean-field approximation. Susceptibility maxima appear at 9.5, 15.4 and 15.5 K, with χ{sub max} of 0.163, 0.375 and 0.435 emu/mol, respectively. Antiferromagnetic ordering is estimated to occur at 9.0, 13.7 and 13.8 K, in the same order. The ratio T{sub c}/T{sub max} is 0.95, 0.89 and 0.89, respectively, suggesting little low dimensional magnetic character in singly hydrated systems. Data at lower temperatures for the dihydrate are fit with an antiferromagnetic 3D-Ising model. For singly hydrated systems the large size of χ{sub max} prevents this; weakened interchain antiferromagnetic interactions yield enhanced susceptibility maxima. Magnetization data exhibit field induced transitions near 13.5 kG for the dihydrate, and near 6.5 kG for singly hydrated systems with enhanced hysteresis. These transitions are interpreted as metamagnetic in nature. - Highlights: • CoBr{sub 2}• 2H{sub 2}O has a larger susceptibility maximum at lower temperature than CoCl{sub 2}• 2H{sub 2}O. • Enhanced antiferromagnetic susceptibility maxima occur in CoBr{sub 2}·H{sub 2}O and CoBr{sub 2}• D{sub 2}O. • Metamagnetic transitions occur at much lower fields in monohydrates than dehydrate. • Interchain antiferromagnetic exchange is weaker in monohydrates than dehydrate. • CoBr{sub 2}• H{sub 2}O exhibit spin glass behavior similar to that seen previously in CoCl{sub 2}·H{sub 2}O.

  16. Soft mode and acoustic mode ferroelectric properties of deuterated ...

    Indian Academy of Sciences (India)

    and fifth order phonon anharmonic interaction terms as well as external electric field term in the crystal Hamilto- nian. Double-time temperature dependent Green's function is used to derive soft mode frequency, dielectric permi- ttivity, microwave absorption, quality factor, acoustic attenuation, electric conductivity, smooth ...

  17. Soft mode and acoustic mode ferroelectric properties of deuterated ...

    Indian Academy of Sciences (India)

    1973) applied molecular field approximation in tunneling model for same crystal system. And Blinc et al. (1961) applied pseudospin model to triglycine group crystal. Much later, Chaudhuri et al (1988) applied Mitsui's (1958) model (which was ...

  18. Rotational spectra of methane and deuterated methane in helium.

    Science.gov (United States)

    Zillich, Robert E; Whaley, K Birgitta

    2010-05-07

    We present calculations of the rotational excitations of CH(4) and CD(4) in helium using correlated basis function theory for excited states of spherical top molecules, together with ground state helium density distributions computed by diffusion Monte Carlo simulations. We derive the rotational self-energy for symmetric top molecules, generalizing the previous analysis for linear molecules. The analysis of the self-energy shows that in helium the symmetry of a rigid spherical rotor is lost. In particular, rotational levels with J=2 split into states of E and of F(2) symmetry. This splitting can be analyzed in terms of an effective tetrahedral distortion that is induced by coupling of the molecular rotation to density fluctuations of the helium. Additional splitting occurs within each symmetry group as a result of rotational coupling to the high density of states between the roton and maxon excitations of (4)He, which also results in broad bands in the corresponding rotational absorption spectra. Connecting these pure rotational dynamics of methane to experimental rovibrational spectra, our results imply that the R(1) line of CH(4) is significantly broadened, while the P(2) is not broadened by rotational relaxation, which is consistent with experiment. Comparison of our results for CH(4) and CD(4) shows that the reduction in the moment of inertia in (4)He scales approximately quadratically with the gas phase moment of inertia, as has also been observed experimentally.

  19. Resonance Raman and quantum chemical studies of short polyene radical cations

    DEFF Research Database (Denmark)

    Keszthelyi, T.; Wilbrandt, R.; Bally, T.

    1997-01-01

    The results of our investigations of the geometric and vibrational structures of some short conjugated polyene radical cations are reported. The radical cations of 1,3-butadiene and three of its deuterated isotopomers, trans- and cis-1,3-pentadiene, 2-methyl-1,3-butadiene, and E- and Z-1...... and to assist assignment of the resonance Raman spectra. A new and improved scaled quantum mechanical force field for the butadiene radical cation was also determined. The presence of more than one rotamer was observed in all the polyene radical cations we investigated. (C) 1997 Elsevier Science B.V....

  20. Chemical synthesis of deuterated folate monoglutamate and in vivo assessment of urinary excretion of deuterated folates in man

    International Nuclear Information System (INIS)

    Gregory, J.F. III; Toth, J.P.

    1988-01-01

    The synthesis and in vivo application of stable-isotopically labeled folic acid was investigated to devise methods suitable for studies of folate metabolism in human subjects. Glutamate-labeled tetradeutero-pteroylglutamic acid (d4-folic acid) was prepared by mixed anhydride coupling of N10-trifluoroacetylpteroic acid and dimethyl L-[3,3,4,4-2H4]glutamic acid, saponification in sodium deuteroxide, and chromatographic purification. Retention of the isotopic label was verified by proton NMR and mass spectrometry of the para-aminobenzoylglutamic acid product of C9-N10 bond cleavage. A method was devised for determination of of isotopic enrichment of urinary d4-folates derived from orally administered d4-folic acid using affinity chromatographic purification, chemical cleavage of the C9-N10 bond, HPLC isolation of the p-[2H4]aminobenzoylglutamate product, followed by negative-ion chemical-ionization gas chromatography/mass spectrometry. Data concerning the urinary excretion of d4-folates derived from an oral dose of d4-folic acid in an adult human are presented

  1. Chemical synthesis of deuterated folate monoglutamate and in vivo assessment of urinary excretion of deuterated folates in man

    Energy Technology Data Exchange (ETDEWEB)

    Gregory, J.F. III; Toth, J.P.

    1988-04-01

    The synthesis and in vivo application of stable-isotopically labeled folic acid was investigated to devise methods suitable for studies of folate metabolism in human subjects. Glutamate-labeled tetradeutero-pteroylglutamic acid (d4-folic acid) was prepared by mixed anhydride coupling of N10-trifluoroacetylpteroic acid and dimethyl L-(3,3,4,4-2H4)glutamic acid, saponification in sodium deuteroxide, and chromatographic purification. Retention of the isotopic label was verified by proton NMR and mass spectrometry of the para-aminobenzoylglutamic acid product of C9-N10 bond cleavage. A method was devised for determination of of isotopic enrichment of urinary d4-folates derived from orally administered d4-folic acid using affinity chromatographic purification, chemical cleavage of the C9-N10 bond, HPLC isolation of the p-(2H4)aminobenzoylglutamate product, followed by negative-ion chemical-ionization gas chromatography/mass spectrometry. Data concerning the urinary excretion of d4-folates derived from an oral dose of d4-folic acid in an adult human are presented.

  2. Chemical synthesis of deuterated folate monoglutamate and in vivo assessment of urinary excretion of deuterated folates in man.

    Science.gov (United States)

    Gregory, J F; Toth, J P

    1988-04-01

    the synthesis and in vivo application of stable-isotopically labeled folic acid was investigated to devise methods suitable for studies of folate metabolism in human subjects. Glutamate-labeled tetradeutero-pteroylglutamic acid (d4-folic acid) was prepared by mixed anhydride coupling of N10-trifluoroacetylpteroic acid and dimethyl L-[3,3,4,4-2H4]glutamic acid, saponification in sodium deuteroxide, and chromatographic purification. Retention of the isotopic label was verified by proton NMR and mass spectrometry of the para-aminobenzoylglutamic acid product of C9-N10 bond cleavage. A method was devised for determination of of isotopic enrichment of urinary d4-folates derived from orally administered d4-folic acid using affinity chromatographic purification, chemical cleavage of the C9-N10 bond, HPLC isolation of the p-[2H4]aminobenzoylglutamate product, followed by negative-ion chemical-ionization gas chromatography/mass spectrometry. Data concerning the urinary excretion of d4-folates derived from an oral dose of d4-folic acid in an adult human are presented.

  3. Selective Analysis of Sulfur-Containing Species in a Heavy Crude Oil by Deuterium Labeling Reactions and Ultrahigh Resolution Mass Spectrometry

    Directory of Open Access Journals (Sweden)

    Xuxiao Wang

    2015-12-01

    Full Text Available A heavy crude oil has been treated with deuterated alkylating reagents (CD3I and C2D5I and directly analyzed without any prior fractionation and chromatographic separation by high-field Orbitrap Fourier Transform Mass Spectrometry (FTMS and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS using electrospray ionization (ESI. The reaction of a polycyclic aromatic sulfur heterocycles (PASHs dibenzothiophene (DBT, in the presence of silver tetrafluoroborate (AgBF4 with ethyl iodide (C2H5I in anhydrous dichloroethane (DCE was optimized as a sample reaction to study heavy crude oil mixtures, and the reaction yield was monitored and determined by proton nuclear magnetic resonance spectroscopy (1H-NMR. The obtained conditions were then applied to a mixture of standard aromatic CH-, N-, O- and S-containing compounds and then a heavy crude oil, and only sulfur-containing compounds were selectively alkylated. The deuterium labeled alkylating reagents, iodomethane-d3 (CD3I and iodoethane-d5 (C2D5I, were employed to the alkylation of heavy crude oil to selectively differentiate the tagged sulfur species from the original crude oil.

  4. Gas chromatography-mass spectrometric identification of iodine species arising from photo-chemical vapor generation

    Science.gov (United States)

    Grinberg, Patricia; Mester, Zoltan; D'Ulivo, Alessandro; Sturgeon, Ralph E.

    2009-07-01

    Ultraviolet irradiation of aqueous solutions of iodide/iodate ion containing low molecular weight organic acids generates volatile iodine species that are amenable to detection by atomic spectrometry. In the presence of formic, acetic or propionic acids, photo-chemical generation results in the formation of HI, methyl- and ethyl-iodide respectively, the latter two products being directly identified by gas chromatography-mass spectrometry. Deuterium and 13C-labeled reagents were employed to elucidate the provenance of the alkyl group. Use of 13CH 3-COOH produced 13CH 3-I; deuterated acetic acid (D 3C-COOD) resulted in the formation of CD 3-I. These observations indicate direct transfer of the alkyl group from the carboxylic acid to iodide, consistent with the suggestion that the mechanism of synthesis involves radical induced reactions.

  5. Closed-loop 15N measurement of N2O and its isotopomers for real-time greenhouse gas tracing

    Science.gov (United States)

    Slaets, Johanna; Mayr, Leopold; Heiling, Maria; Zaman, Mohammad; Resch, Christian; Weltin, Georg; Gruber, Roman; Dercon, Gerd

    2016-04-01

    Quantifying sources of nitrous oxide is essential to improve understanding of the global N cycle and to develop climate-smart agriculture, as N2O has a global warming potential 300 times higher than CO2. The isotopic signature and the intramolecular distribution (site preference) of 15N are powerful tools to trace N2O, but the application of these methods is limited as conventional methods cannot provide continuous and in situ data. Here we present a method for closed-loop, real time monitoring of the N2O flux, the isotopic signature and the intramolecular distribution of 15N by using off-axis integrated cavity output spectroscopy (ICOS, Los Gatos Research). The developed method was applied to a fertilizer inhibitor experiment, in which N2O emissions were measured on undisturbed soil cores for three weeks. The treatments consisted of enriched urea-N (100 kg urea-N/ha), the same fertilizer combined with the nitrification inhibitor nitrapyrin (375 g/100 kg urea), and control cores. Monitoring the isotopic signature makes it possible to distinguish emissions from soil and fertilizer. Characterization of site preference could additionally provide a tool to identify different microbial processes leading to N2O emissions. Furthermore, the closed-loop approach enables direct measurement on site and does not require removal of CO2 and H2O. Results showed that 75% of total N2O emissions (total=11 346 μg N2O-N/m2) in the fertilized cores originated from fertilizer, while only 55% of total emissions (total=2 450 μg N2ON/m2) stemmed from fertilizer for the cores treated with nitrapyrin. In the controls, N2O derived from soil was only 40% of the size of the corresponding pool from the fertilized cores, pointing towards a priming effect on the microbial community from the fertilizer and demonstrating the bias that could be introduced by relying on non-treated cores to estimate soil emission rates, rather than using the isotopic signature. The site preference increased linearly over time for the cores with fertilizer and those with nitrapyrin, but the increase was stronger for the fertilized cores: during the first 10 days of the experiment, theses cores showed a more negative site preference than the cores with inhibitor, while during the last 10 days, the site preference for the fertilized cores was more positive than that of the inhibitor. This change indicates that the site preference of 15N can be used to distinguish the processes of nitrification and denitrification, the former having been supressed by nitrapyrin in the cores treated with the inhibitor. Low enrichment levels (5% atomic excess in this study) sufficed in order to separate emissions from soil and fertilizer, making the proposed closed-loop approach a cost-effective and practical tool to obtain a continuous, in situ characterization of N2O sources.

  6. A chiral synthesis of dapoxetine hydrochloride, a serotonin re-uptake inhibitor, and its 14C isotopomer

    International Nuclear Information System (INIS)

    Wheeler, W.J.; O'Bannon, D.D.

    1992-01-01

    The 14 C-isotopmer of dapoxetine-[ 14 C] HCl (S (+) -N,N-dimethyl-α[2-(1-naphthalenyloxy)ethyl-2- 14 C]benzenemeth a-n amine hydrochloride, 1a), a potent serotonin re-uptake inhibitor has been prepared by a chiral synthesis, starting with tert. -butyloxyphenylglycine (3). Borane reduction, followed by activation of the resulting alcohol 4 as its mesylate 5b, provided the chiral starting material. The radiolabel was introduced by reaction of 5b with sodium cyanide-[ 14 C]. The desired product (1) was then elaborated from nitrile 6a,b via a five step synthesis in an overall 19.5% radiochemical yield. (Author)

  7. Molecular vibration-sensing component in human olfaction.

    Directory of Open Access Journals (Sweden)

    Simon Gane

    Full Text Available Whether olfaction recognizes odorants by their shape, their molecular vibrations, or both remains an open and controversial question. A convenient way to address it is to test for odor character differences between deuterated and undeuterated odorant isotopomers, since these have identical ground-state conformations but different vibrational modes. In a previous paper (Franco et al. (2011 Proc Natl Acad Sci USA 108:9, 3797-802 we showed that fruit flies can recognize the presence of deuterium in odorants by a vibrational mechanism. Here we address the question of whether humans too can distinguish deuterated and undeuterated odorants. A previous report (Keller and Vosshall (2004 Nat Neurosci 7:4, 337-8 indicated that naive subjects are incapable of distinguishing acetophenone and d-8 acetophenone. Here we confirm and extend those results to trained subjects and gas-chromatography [GC]-pure odorants. However, we also show that subjects easily distinguish deuterated and undeuterated musk odorants purified to GC-pure standard. These results are consistent with a vibrational component in human olfaction.

  8. Experimental and theoretical studies of the reaction of the OH radical with alkyl sulfides: 1. Direct observations of the formation of the OH-DMS adduct-pressure dependence of the forward rate of addition and development of a predictive expression at low temperature.

    Science.gov (United States)

    Williams, M B; Campuzano-Jost, P; Cossairt, B M; Hynes, A J; Pounds, A J

    2007-01-11

    the range 238-245 K, allowing the formulation of an expression which can be used to calculate the effective rate coefficient for reaction 1 at any pressure and oxygen concentration. The expression can calculate the effective rate coefficient for reaction 1 to +/- 40% over the range 220-260 K, with the largest errors at the extremes of this range. Gaussian 03 has been used to calculate the structure of the OH-DMS adduct and its deuterated isotopomer. We find similar bound structures for both isotopomers. The calculated enthalpies of formation of the adducts are lower than the experimentally determined values.

  9. Application of a Pyroprobe-Deuterium NMR System: Deuterium Tracing and Mechanistic Study of Upgrading Process for Lignin Model Compounds

    Energy Technology Data Exchange (ETDEWEB)

    Ben, Haoxi; Jarvis, Mark W.; Nimlos, Mark R.; Gjersing, Erica L.; Sturgeon, Matthew R.; Foust, Thomas D.; Ragauskas, Arthur J.; Biddy, Mary J.

    2016-04-21

    In this study, a pyroprobe-deuterium (2H) NMR system has been used to identify isotopomer products formed during the deuteration and ring opening of lignin model compounds. Several common model compounds for lignin and its upgraded products, including guaiacol, syringol, toluene, p-xylene, phenol, catechol, cyclohexane, methylcyclohexane, and methylcyclopentane, have been examined for selective ring opening. Similar pathways for upgrading of toluene and p-xylene has been found, which will undergo hydrogenation, methyl group elimination, and ring opening process, and benzene, cyclohexane, and methylcyclohexane have been found as major intermediates before ring opening. Very interestingly, the 2H NMR analysis for the deuterium-traced ring opening of catechol on Ir/..gamma..-Al2O3 is almost identical to the ring opening process for phenol. The ring opening processes for guaiacol and syringol appeared to be very complicated, as expected. Benzene, phenol, toluene, cyclohexane, and methylcyclohexane have been determined to be the major products.

  10. Implausibility of the vibrational theory of olfaction.

    Science.gov (United States)

    Block, Eric; Jang, Seogjoo; Matsunami, Hiroaki; Sekharan, Sivakumar; Dethier, Bérénice; Ertem, Mehmed Z; Gundala, Sivaji; Pan, Yi; Li, Shengju; Li, Zhen; Lodge, Stephene N; Ozbil, Mehmet; Jiang, Huihong; Penalba, Sonia F; Batista, Victor S; Zhuang, Hanyi

    2015-05-26

    The vibrational theory of olfaction assumes that electron transfer occurs across odorants at the active sites of odorant receptors (ORs), serving as a sensitive measure of odorant vibrational frequencies, ultimately leading to olfactory perception. A previous study reported that human subjects differentiated hydrogen/deuterium isotopomers (isomers with isotopic atoms) of the musk compound cyclopentadecanone as evidence supporting the theory. Here, we find no evidence for such differentiation at the molecular level. In fact, we find that the human musk-recognizing receptor, OR5AN1, identified using a heterologous OR expression system and robustly responding to cyclopentadecanone and muscone, fails to distinguish isotopomers of these compounds in vitro. Furthermore, the mouse (methylthio)methanethiol-recognizing receptor, MOR244-3, as well as other selected human and mouse ORs, responded similarly to normal, deuterated, and (13)C isotopomers of their respective ligands, paralleling our results with the musk receptor OR5AN1. These findings suggest that the proposed vibration theory does not apply to the human musk receptor OR5AN1, mouse thiol receptor MOR244-3, or other ORs examined. Also, contrary to the vibration theory predictions, muscone-d30 lacks the 1,380- to 1,550-cm(-1) IR bands claimed to be essential for musk odor. Furthermore, our theoretical analysis shows that the proposed electron transfer mechanism of the vibrational frequencies of odorants could be easily suppressed by quantum effects of nonodorant molecular vibrational modes. These and other concerns about electron transfer at ORs, together with our extensive experimental data, argue against the plausibility of the vibration theory.

  11. Measuring deuterium enrichment of glucose hydrogen atoms by gas chromatography/mass spectrometry.

    Science.gov (United States)

    Antoniewicz, Maciek R; Kelleher, Joanne K; Stephanopoulos, Gregory

    2011-04-15

    We developed a simple and accurate method for determining deuterium enrichment of glucose hydrogen atoms by electron impact gas chromatography mass spectrometry (GC/MS). First, we prepared 18 derivatives of glucose and screened over 200 glucose fragments to evaluate the accuracy and precision of mass isotopomer data for each fragment. We identified three glucose derivatives that gave six analytically useful ions: (1) glucose aldonitrile pentapropionate (m/z 173 derived from C4-C5 bond cleavage; m/z 259 from C3-C4 cleavage; m/z 284 from C4-C5 cleavage; and m/z 370 from C5-C6 cleavage); (2) glucose 1,2,5,6-di-isopropylidene propionate (m/z 301, no cleavage of glucose carbon atoms); and (3) glucose methyloxime pentapropionate (m/z 145 from C2-C3 cleavage). Deuterium enrichment at each carbon position of glucose was determined by least-squares regression of mass isotopomer distributions. The validity of the approach was tested using labeled glucose standards and carefully prepared mixtures of standards. Our method determines deuterium enrichment of glucose hydrogen atoms with an accuracy of 0.3 mol %, or better, without the use of any calibration curves or correction factors. The analysis requires only 20 μL of plasma, which makes the method applicable for studying gluconeogenesis using deuterated water in cell culture and animal experiments. © 2011 American Chemical Society

  12. "Long-distance" H/D isotopic self-organization phenomena in scope of the infrared spectra of hydrogen-bonded terephthalic and phthalic acid crystals.

    Science.gov (United States)

    Flakus, Henryk T; Hachuła, Barbara; Hołaj-Krzak, Jakub T; Al-Agel, Faisal A; Rekik, Najeh

    2017-02-15

    This paper deals with the experimental and theoretical studies of abnormal properties of terephthalic acid (TAC) and phthalic acid (PAC) crystals manifested in the H/D isotopic exchange. The widely utilized deuteration routine appeared to be insufficiently effective in the case of the h 6 -TAC isotopomer. In the case of the d 4 -TAC derivative the isotopic exchange process occurred noticeably more effectively. In contrast, both isotopomers of PAC, h 6 and d 4 , appeared much more susceptible for deuteration. A theoretical model was elaborated describing "long-distance" dynamical co-operative interactions involving hydrogen bonds in TAC and PAC crystals. The model assumes extremely strong dynamical co-operative interactions of hydrogen bonds from the adjacent (COOH) 2 cycles. This leads to an additional stabilization of h 6 -TAC molecular chains. The interaction energies affect the chemical equilibrium of the H/D isotopic exchange. The model predicts a differentiated influence of the H and D atoms linked to the aromatic rings on to the process. In this approach the totally-symmetric CH bond stretching vibrations and the proton stretching totally symmetric vibrations couple with the π-electronic motions. It was also shown that identical hydrogen isotope atoms, H or D, in whole TAC molecules, noticeably enlarge the energy of the dynamical co-operative interactions in the crystals, in contrast to the case of different hydrogen isotopes present in the carboxyl groups and linked to the aromatic rings. The "long-distance" dynamical co-operative interactions in PAC crystals were found of a minor importance due to the electronic properties of PAC molecules. Copyright © 2016 Elsevier B.V. All rights reserved.

  13. Stereospecific synthesis of specifically deuterated metoprolol enantiomers from chiral starting materials

    Energy Technology Data Exchange (ETDEWEB)

    Shetty, H.U.; Murthy, S.S.; Nelson, W.L. (Washington Univ., Seattle, WA (USA). Dept. of Medicinal Chemistry)

    1989-10-01

    Enantiomers of metoprolol (1) containing six deuterium atoms in the isopropyl methyl groups ((2R)), two deuterium atoms at C-2 and C-6 of the aromatic ring ((2S)), and two deuterium atoms at C-3 of the propanolamine side chain ((2S)) were prepared. Chiral 2,2-dimethyl-1,3-dioxolane-4-methanols ((4R) and (4S)) were key synthons. Sources of deuterium were ({sup 2}H{sub 6})-isopropyl-amine, 4-(2-methoxyethyl)-2,6-({sup 2}H{sub 2})-phenol, prepared by {sup 2}HCl/{sup 2}H{sub 2}O exchange, and (4S)-2,2-dimethyl-1,3-dioxolane-4-({sup 2}H{sub 2})-4-methanol, prepared by LiAl{sup 2}H{sub 4} reduction of (4S)-methyl 2,2-dimethyl-1,3-dioxolane-4-carboxylate. Enantiomeric excess was greater than 94% for each of the prepared enantiomers, as determined independently by {sup 1}H NMR spectroscopy on diastereomeric derivatives and by chiral column HPLC. (author).

  14. Search for neutrons from deuterated palladium subject to high electrical currents

    International Nuclear Information System (INIS)

    Taylor, S.F.; Claytor, T.N.; Tuggle, D.G.; Jones, S.E.

    1994-01-01

    Tritium has been detected evolving from samples of deuteriated palladium wires and powders subject to pulsed high voltage at Los Alamos. They wanted to measure whether these samples were emitting neutrons. The idea of pulsing current through the wires and powders was to drive the deuterium in and out by rapid electrical heating. With promising tritium results in hand, the experiments were prepared at Los Alamos, and then taken to BYU and run in the neutron detector located in a tunnel in Provo canyon under 35 m of rock and dirt overburden. The neutrons detector and sample setup are described. Results including total neutron counts, time distributions, and an indication of the energy distributions are discussed. The results do not provide compelling evidence of neutron production, but are not inconsistent with earlier measurements of neutrons and tritium. Difficulties in explaining the difference in tritium and neutron measurements are also discussed. Plans for further work are presented

  15. Probing self assembly in biological mixed colloids by SANS, deuteration and molecular manipulation

    International Nuclear Information System (INIS)

    Hjelm, R.P.; Thiyagarajan, P.; Hoffman, A.; Alkan-Onyuksel, H.

    1994-01-01

    Small-angle neutron scattering was used to obtain information on the form and molecular arrangement of particles in mixed colloids of bile salts with phosphatidylcholine, and bile salts with monoolein. Both types of systems showed the same general characteristics. The particle form was highly dependent on total lipid concentration. At the highest concentrations the particles were globular mixed micelles with an overall size of 50 Angstrom. As the concentration was reduced the mixed micelles elongated, becoming rodlike with diameter about 50 Angstrom. The rods had a radial core-shell structure in which the phosphatidylcholine or monoolein fatty tails were arranged radially to form the core with the headgroups pointing outward to form the shell. The bile salts were at the interface between the shell and core with the hydrophilic parts facing outward as part of the shell. The lengths of the rods increased and became more polydispersed with dilution. At sufficiently low concentrations the mixed micelles transformed into single bilayer vesicles. These results give insight on the physiological function of bile and on the rules governing the self assembly of bile particles in the hepatic duct and the small intestine

  16. Physiologically Based Simulations of Deuterated Glucose for Quantifying Cell Turnover in Humans

    Directory of Open Access Journals (Sweden)

    Christoph Niederalt

    2017-04-01

    Full Text Available In vivo [6,6-2H2]-glucose labeling is a state-of-the-art technique for quantifying cell proliferation and cell disappearance in humans. However, there are discrepancies between estimates of T cell proliferation reported in short (1-day versus long (7-day 2H2-glucose studies and very-long (9-week 2H2O studies. It has been suggested that these discrepancies arise from underestimation of true glucose exposure from intermittent blood sampling in the 1-day study. Label availability in glucose studies is normally approximated by a “square pulse” (Sq pulse. Since the body glucose pool is small and turns over rapidly, the availability of labeled glucose can be subject to large fluctuations and the Sq pulse approximation may be very inaccurate. Here, we model the pharmacokinetics of exogenous labeled glucose using a physiologically based pharmacokinetic (PBPK model to assess the impact of a more complete description of label availability as a function of time on estimates of CD4+ and CD8+ T cell proliferation and disappearance. The model enabled us to predict the exposure to labeled glucose during the fasting and de-labeling phases, to capture the fluctuations of labeled glucose availability caused by the intake of food or high-glucose beverages, and to recalculate the proliferation and death rates of immune cells. The PBPK model was used to reanalyze experimental data from three previously published studies using different labeling protocols. Although using the PBPK enrichment profile decreased the 1-day proliferation estimates by about 4 and 7% for CD4 and CD8+ T cells, respectively, differences with the 7-day and 9-week studies remained significant. We conclude that the approximations underlying the “square pulse” approach—recently suggested as the most plausible hypothesis—only explain a component of the discrepancy in published T cell proliferation rate estimates.

  17. Rate coefficients for the reactions of hydroxyl radicals with methane and deuterated methanes

    Energy Technology Data Exchange (ETDEWEB)

    Gierczak, T.; Talukdar, R.K.; Herndon, S.C.; Vaghjiani, G.L.; Ravishankara, A.R. [National Oceanic and Atmospheric Administration, Boulder, CO (United States)]|[Univ. of Colorado, Boulder, CO (United States)

    1997-04-24

    The rate coefficients for the reaction of OH with CH{sub 3}D (k{sub 1}), CH{sub 2}D{sub 2} (k{sub 2}), CHD{sub 3} (k{sub 3}), CD{sub 4} (k{sub 4}), and CH{sub 4} (k{sub 5}) as well as that of OD with CH{sub 4} (k{sub 6}) have been measured using the pulsed photolytic production of OH followed by its detection via pulsed laser induced fluorescence. k{sub 1}-k{sub 4} and k{sub 6} were measured between {approx}220 and {approx}415 K, while k{sub 5} was measured down to 195 K. The measured rate coefficients do not strictly obey the Arrhenius expression. However, below 298 K, they can be represented by a given expression. The obtained values of the rate coefficients and kinetic isotope effects are compared with values previously measured or calculated by other groups. The atmospheric implications of this data are briefly discussed. 33 refs., 4 figs., 7 tabs.

  18. Ion source parameters and hydrogen scrambling in the ECD of selectively deuterated peptides

    DEFF Research Database (Denmark)

    Duchateau, Magalie; Jørgensen, Thomas J. D.; Robine, Ophélie

    2014-01-01

    Hydrogen/deuterium exchange monitored by mass spectrometry (HDX-MS) has become an important method to study protein dynamics in solution. Recently, electron-based fragmentation methods (ECD and ETD) have been utilized in HDX-MS/MS experiments as experimental tools to increase the spatial resolution...... (the ability to obtain deuterium levels of individual residues). An essential prerequisite for this approach is that the level of hydrogen scrambling is negligible. The occurrence of hydrogen scrambling depends critically on the extent of vibrational excitation in the mass spectrometer. In particular......, the desolvation process in the electrospray ion source is likely to induce scrambling at standard operating conditions. Consequently, finding experimental conditions that minimize hydrogen scrambling to a negligible level is thus pivotal for the application of electron-based fragmentation in HDX-MS/MS experiments...

  19. UV Photodissociation Mass Spectrometry Accurately Localize Sites of Backbone Deuteration in Peptides

    DEFF Research Database (Denmark)

    Mistarz, Ulrik Hvid; Bellina, Bruno; Jensen, Pernille Foged

    2018-01-01

    Hydrogen/deuterium exchange mass spectrometry (HDX-MS) is now positioned as a routinely used technique to inform on protein structure, dynamics, and interactions. Localizing the deuterium content on a single residue basis increases the spatial resolution of this technique enabling detailed...... structural analysis. Here we investigate the use of ultraviolet photodissociation (UVPD) at 213 nm to localize incorporated deuterium with single residue resolution in HDX-MS experiments. Using a selectively labeled peptide, we show that UVPD occurs without H/D scrambling as the peptide probe accurately...... retains its solution-phase deuterium labeling pattern. Our results indicate that UVPD provides an attractive alternative to electron mediated dissociation to increase the spatial resolution of the HDX-MS experiment, combining high fragmentation efficiency, high fragment ion diversity, and low charge...

  20. Deuterium thermal desorption from Ni-rich deuterated Mg thin films

    Energy Technology Data Exchange (ETDEWEB)

    Patel, N.; Kale, A.; Mosaner, P.; Checchetto, R.; Miotello, A. [Dipartimento di Fisica dell' Universita di Trento, I-38050 Povo (Italy); Das, G. [Dipartimento di Medicina Sperimentale e Clinica, Universita degli Studi, Magna Grecia, I-88100 Catanzaro (Italy)

    2008-02-15

    Mg-Ni multilayers and Ni-rich Mg thin films were deposited by electron gun and pulsed laser deposition, respectively. Samples were submitted to thermal treatment in deuterium or hydrogen atmosphere at 423 K and {proportional_to}10{sup 5} Pa pressure to promote the metal to hydride phase transition. The H chemical bonding in the multilayer samples, after annealing in H{sub 2} atmosphere, was examined by Fourier transform infrared spectroscopy: the obtained spectra suggest that the samples with the Mg:Ni=2:1 atomic ratio contain the Mg{sub 2}NiH{sub 4} phase while the samples with lower Ni concentration contain both the MgH{sub 2} and the Mg{sub 2}NiH{sub 4} phases. The effect of the Ni additive on the stability of the deuteride phase was studied by thermal desorption spectroscopy (TDS). The TDS spectra of the single-phase Mg{sub 2}NiD{sub 4} samples show a TDS peak at 400 K. The TDS spectra of the two-phase samples show both the D{sub 2} desorption peak at 400 K and a second peak at higher temperature that we attributed to the dissociation of the MgD{sub 2} phase. The high-temperature peak shifts to lower temperatures by increasing the Ni content. It is suggested that in the two-phase samples, the lattice volumes having the Mg{sub 2}Ni structure resulting from the dissociation of the Mg{sub 2}NiD{sub 4} phase reduce the thermodynamic stability of the MgD{sub 2} phase. (author)

  1. Electron transport in liquids: effect of unbalancing the methane molecule by deuteration

    International Nuclear Information System (INIS)

    Floriano, M.A.; Freeman, G.R.

    1983-01-01

    The mobility of electrons in nonpolar liquids is strongly dependent on the molecular shape. In spherelike methane the mobility is three orders of magnitude greater than in the rodlike ethane. To investigate the enormous gap between methane and ethane, the effect of slightly perturbing the symmetry of the methane molecule by progressive deuterium substitution was studied. At temperatures near the triple point (T/Tsub(c) approximately 0.48) and near the mobility maximum (T/Tsub(c) approximately 0.93) the mobilities change in the order: CH 4 > CH 3 D > CH 2 D 2 3 approximately CD 4 . The differences are related to the symmetries of the molecules and to the rotational motions. (Authors)

  2. Triple nuclear reactions (d, n) in laser-generated plasma from deuterated targets

    Czech Academy of Sciences Publication Activity Database

    Torrisi, L.; Cutroneo, Mariapompea

    2017-01-01

    Roč. 24, č. 6 (2017), č. článku 063102. ISSN 1070-664X R&D Projects: GA ČR(CZ) GBP108/12/G108; GA MŠk LM2015056 Institutional support: RVO:61389005 Keywords : ion acceleration * pulsed laser * polyethylene Subject RIV: BL - Plasma and Gas Discharge Physics OBOR OECD: Fluids and plasma physics (including surface physics) Impact factor: 2.115, year: 2016

  3. Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP.

    Science.gov (United States)

    Nickels, Jonathan D; O'Neill, Hugh; Hong, Liang; Tyagi, Madhusudan; Ehlers, Georg; Weiss, Kevin L; Zhang, Qiu; Yi, Zheng; Mamontov, Eugene; Smith, Jeremy C; Sokolov, Alexei P

    2012-10-03

    We present a detailed analysis of the picosecond-to-nanosecond motions of green fluorescent protein (GFP) and its hydration water using neutron scattering spectroscopy and hydrogen/deuterium contrast. The analysis reveals that hydration water suppresses protein motions at lower temperatures (high temperatures. Experimental data demonstrate that the hydration water is harmonic at temperatures high temperatures: on the picosecond-to-nanosecond timescale, the hydration water exhibits diffusive dynamics, while the protein motions are localized to temperatures appears to be stronger in GFP than in other globular proteins. We ascribe this observation to the barrellike structure of GFP. Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  4. Neutron emission generated during wire array Z-pinch implosion onto deuterated fiber

    Czech Academy of Sciences Publication Activity Database

    Klir, D.; Kravarik, J.; Kubes, P.; Rezac, K.; Ananev, S.S.; Bakshaev, Yu. L.; Blinov, P. I.; Chernenko, A. S.; Kazakov, E.D.; Korolev, V. D.; Meshcherov, B.R.; Ustroev, G. I.; Juha, Libor; Krása, Josef; Velyhan, Andriy

    2008-01-01

    Roč. 15, č. 3 (2008), 32701/1-32701/13 ISSN 1070-664X R&D Projects: GA MŠk(CZ) LC528; GA MŠk LA08024 Institutional research plan: CEZ:AV0Z10100523 Keywords : fusion plasmas * d-d reaction * neutron yield * Z pinch * high-current discharges Subject RIV: BL - Plasma and Gas Discharge Physics Impact factor: 2.427, year: 2008

  5. P-B Desulfurization: An Enabling Method for Protein Chemical Synthesis and Site-Specific Deuteration.

    Science.gov (United States)

    Jin, Kang; Li, Tianlu; Chow, Hoi Yee; Liu, Han; Li, Xuechen

    2017-11-13

    Cysteine-mediated native chemical ligation is a powerful method for protein chemical synthesis. Herein, we report an unprecedentedly mild system (TCEP/NaBH 4 or TCEP/LiBEt 3 H; TCEP=tris(2-carboxyethyl)phosphine) for chemoselective peptide desulfurization to achieve effective protein synthesis via the native chemical ligation-desulfurization approach. This method, termed P-B desulfurization, features usage of common reagents, simplicity of operation, robustness, high yields, clean conversion, and versatile functionality compatibility with complex peptides/proteins. In addition, this method can be used for incorporating deuterium into the peptides after cysteine desulfurization by running the reaction in D 2 O buffer. Moreover, this method enables the clean desulfurization of peptides carrying post-translational modifications, such as phosphorylation and crotonylation. The effectiveness of this method has been demonstrated by the synthesis of the cyclic peptides dichotomin C and E and synthetic proteins, including ubiquitin, γ-synuclein, and histone H2A. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Normal and Inverse Diffusive Isotope Fractionation of Deuterated Toluene and Benzene in Aqueous Systems

    DEFF Research Database (Denmark)

    Rolle, Massimo; Jin, Biao

    2017-01-01

    Diffusive isotope fractionation of organic contaminants in aqueous solution is difficult to quantify, and only a few experimental data sets are available for compounds of environmental interest. In this study, we investigate diffusive fractionation of perdeuterated and nondeuterated benzene...... of the two monoaromatic hydrocarbons. Toluene showed a normal diffusive isotope effect (DC7D8/DC7H8 = 0.96) with enrichment of the nondeuterated isotopologue in the direction of the diffusive and transverse dispersive fluxes. Conversely, the measured trends for benzene indicate inverse diffusive...... fractionation (DC6D6/DC6H6 = 1.02), with a remarkably faster diffusion rate of the perdeuterated isotopologue that was enriched in the downgradient portion of the diffusion tubes and at the fringes of the contaminant plumes in the flow-through setup. These outcomes can neither be interpreted as mass...

  7. A comparison of fluorescein and deuterated water as tracers for determination of constructed wetland retention time

    Czech Academy of Sciences Publication Activity Database

    Holcová, V.; Šíma, J.; Dušek, Jiří

    2013-01-01

    Roč. 11, č. 2 (2013), s. 200-204 ISSN 1895-1066 Institutional support: RVO:67179843 Keywords : environmental analytical chemistry * wastewater treatment * reed bed * water tracing * isotope-ratio mass spectrometry Subject RIV: EH - Ecology, Behaviour Impact factor: 1.329, year: 2013

  8. Simulation of nonylphenol degradation in leafy vegetables using a deuterated tracer.

    Science.gov (United States)

    Fang, Kun; Jiang, Zejun; Wang, Jing; She, Yongxin; Jin, Maojun; Jin, Fen; Yang, Mao

    2015-07-01

    In this study, the residues of nonylphenol, an endocrine-disrupting chemical, were investigated in two types of leafy vegetables, leek and cabbage, that are commonly consumed in eight provinces in China. Nonylphenol was detected in 43.50% of the 223 samples, at concentrations up to 51.90 μg kg(-1). The isotopic tracer 4-n-NP-2,3,5,6-d4-OD was chosen to simulate the degradation of nonylphenol in cabbage. More than 80% of the tracer was degraded in the first 7 days, and most of it had vanished by the end of the 35-day experimental period. A preliminary degradation equation was established to describe the variation of nonylphenol residues in leafy vegetables, and the amounts of nonylphenol in four pesticides were analyzed. The results indicated that nonylphenol residues in leafy vegetables are probably derived from the applied pesticides. The potential risk of pesticide adjuvants as well as that of the active ingredient in pesticides should be taken into consideration when recommending a safety interval period.

  9. Synthesis of selectively deuterated and tritiated lupane derivatives with cytotoxic activity

    Czech Academy of Sciences Publication Activity Database

    Vlk, M.; Urban, M.; Elbert, Tomáš; Šarek, J.

    2013-01-01

    Roč. 298, č. 2 (2013), s. 1149-1157 ISSN 0236-5731 Grant - others:GA ČR(CZ) GA305/09/1216 Institutional support: RVO:61388963 Keywords : isotopic labelling * tritium * deuterium * betulin * betulinic acid * cytotoxicity Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 1.415, year: 2013

  10. Plasma cholesterol synthesis using deuterated water in humans: effect of short-term food restriction

    International Nuclear Information System (INIS)

    Jones, P.J.; Scanu, A.M.; Schoeller, D.A.

    1988-01-01

    Our purpose was to develop methods in humans to determine the fractional synthetic rate (FSR) of plasma pool free cholesterol using the rate of deuterium incorporation from body water. The sensitivity of this method was examined by measuring FSR after periods of fasting and feeding. Five healthy men with normal lipoprotein levels were given a prepared diet containing 40% of calories as fat and a polyunsaturated/saturated fatty acid ratio of 0.25 for 8 days, except for day 7 when they were given only drinking water. Beginning after the supper meal on day 6, they received no food until 8 AM on day 8 when they consumed meals as normal. Over days 7 and 8 the subjects were given prime and constant deuterium oxide orally to maintain body water deuterium enrichment at about 0.05 atom % excess. Plasma samples were obtained at 0 hours (day 7, 8 AM) and at 12, 24, 36, and 48 hours thereafter. Free cholesterol was extracted, purified by thin-layer chromatography, and combusted to water. The water was reduced to H 2 and analyzed for deuterium enrichment by isotope ratio mass spectrometry. Analytic precision of this system was determined as 3.5 0/00 (parts per mil) vs Standard Mean Ocean Water. Deuterium enrichment of plasma water for the group during the 48-hour deuterium oxide administration period was 3143 0/00 +/- 310 0/00 (mean +/- SEM). Cholesterol deuterium enrichment for the group during the 12-hour period of fasting (10.9 0/00 +/- 4.1 0/00) was not different from that during feeding (14.2 0/00 +/- 6.2 0/00)

  11. An investigation of phase transitions in solid methane and deuterated derivatives to pressures of 3 kbar

    International Nuclear Information System (INIS)

    Sprik, M.

    1982-01-01

    The first part of this thesis is an experimental investigation of the interaction responsible for the I-II transition and the second part comprises three theoretical studies of several of the properties of phase I and II. The first chapter of part I, is a general introduction to a thermodynamic treatment of the isotope effect in an orientational phase transition. The thermodynamic approach yields a corresponding state model for the phase diagrams of the five isotopes of methane (CH 4 , CHD 3 , CH 2 D 2 , CH 3 D and CD 4 ). In the remaining two chapters of part I, the corresponding state relation mentioned above is applied to the I-II transition of methane in order to obtain an experimental value for the effective exponent n of the dependence on intermolecular separation of the ordering anisotropic interaction. Part II starts with a derivation of a quasi-classical approximation to the statistical density matrix of a free spherical top. While the orientational system is treated classically, the consequences of the other characteristic of the methane molecules are considered, i.e. the high approximately odd symmetry of the molecule (the octupole field in phase II is odd under spatial inversion). It is argued that the renormalization group analysis of critical phenomena in certain highly complicated antiferromagnetic systems may be equally well applied to the I-II transition in methane. Finally, the study of the quantum effect in phase II is resumed. The spin lattice relaxation time at very low temperature is calculated from first principles using an orientational dynamical process of purely quantum-mechanical nature. (Auth.)

  12. Neutron measurements in deuterated palladium cathodes subjected to pulsed electrolytic currents

    International Nuclear Information System (INIS)

    Granada, J.R.; Mayer, R.E.; Guido, G.; Florido, P.C.; Patino, N.E.; Gillette, V.H.; Sobehart, L.; Gomez, S.; Larreteguy, A.; Universidad Nacional de Cuyo, San Carlos de Bariloche

    1989-01-01

    We report on neutron measurements performed on electrolytic cells using a high efficiency (22%) detection system in combination with a procedure involving a non-stationary current through the cell's circuit. Under these conditions, neutron production was observed in cells containing LiH dissolved in heavy water with a Palladium cathode. Characteristic patterns showing one or two bumps were obtained in a repeatable fashion, depending on the previous charging history of the cathode. (orig.)

  13. Quantitative MALDI tandem mass spectrometric imaging of cocaine from brain tissue with a deuterated internal standard.

    NARCIS (Netherlands)

    Pirman, D.A.; Reich, R.F.; Kiss, A.; Heeren, R.M.A.; Yost, R.A.

    2013-01-01

    Mass spectrometric imaging (MSI) is an analytical technique used to determine the distribution of individual analytes within a given sample. A wide array of analytes and samples can be investigated by MSI, including drug distribution in rats, lipid analysis from brain tissue, protein differentiation

  14. High Resolution Spectroscopy of HCN Isotopomers: H13CN, HC15N, and H13C15N in the Ground and First Excited Bending Vibrational State

    Czech Academy of Sciences Publication Activity Database

    Fuchs, U.; Brünken, S.; Fuchs, G. W.; Thorwirth, S.; Ahrens, V.; Lewen, F.; Urban, Štěpán

    59a, č. 11 (2004), s. 861-872 ISSN 0932-0784 R&D Projects: GA ČR GA203/01/1274; GA MŠk ME 445 Institutional research plan: CEZ:AV0Z4040901 Keywords : molecular spectroscopy * sub-Doppler spectroscopy * HCN Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 0.799, year: 2004

  15. Isotopomer profiling of Leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (TCA) anaplerosis, glutamate synthesis, and growth.

    Science.gov (United States)

    Saunders, Eleanor C; Ng, William W; Chambers, Jennifer M; Ng, Milica; Naderer, Thomas; Krömer, Jens O; Likic, Vladimir A; McConville, Malcolm J

    2011-08-05

    Leishmania parasites proliferate within nutritionally complex niches in their sandfly vector and mammalian hosts. However, the extent to which these parasites utilize different carbon sources remains poorly defined. In this study, we have followed the incorporation of various (13)C-labeled carbon sources into the intracellular and secreted metabolites of Leishmania mexicana promastigotes using gas chromatography-mass spectrometry and (13)C NMR. [U-(13)C]Glucose was rapidly incorporated into intermediates in glycolysis, the pentose phosphate pathway, and the cytoplasmic carbohydrate reserve material, mannogen. Enzymes involved in the upper glycolytic pathway are sequestered within glycosomes, and the ATP and NAD(+) consumed by these reactions were primarily regenerated by the fermentation of phosphoenolpyruvate to succinate (glycosomal succinate fermentation). The initiating enzyme in this pathway, phosphoenolpyruvate carboxykinase, was exclusively localized to the glycosome. Although some of the glycosomal succinate was secreted, most of the C4 dicarboxylic acids generated during succinate fermentation were further catabolized in the TCA cycle. A high rate of TCA cycle anaplerosis was further suggested by measurement of [U-(13)C]aspartate and [U-(13)C]alanine uptake and catabolism. TCA cycle anaplerosis is apparently needed to sustain glutamate production under standard culture conditions. Specifically, inhibition of mitochondrial aconitase with sodium fluoroacetate resulted in the rapid depletion of intracellular glutamate pools and growth arrest. Addition of high concentrations of exogenous glutamate alleviated this growth arrest. These findings suggest that glycosomal and mitochondrial metabolism in Leishmania promastigotes is tightly coupled and that, in contrast to the situation in some other trypanosomatid parasites, the TCA cycle has crucial anabolic functions.

  16. Synthesis and positron emission tomography studies of C-11-labeled isotopomers and metabolites of GTS-21, a partial {alpha}7 nicotinic cholinergic agonist drug

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Sung Won [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States) and Department of Chemistry, State University of New York at Stony Brook, Stony Brook, NY 11794-3400 (United States)]. E-mail: swkim@bnl.gov; Ding Yushin [Department of Chemistry, State University of New York at Stony Brook, Stony Brook, NY 11794-3400 (United States); Department of Radiology, Yale University School of Medicine, New Haven, CT 06520-8048 (United States); Alexoff, David [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Patel, Vinal [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Logan, Jean [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Lin, K.-S. [Department of Radiology, University of Pittsburgh, Pittsburgh, PA 15213 (United States); Shea, Colleen [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Muench, Lisa [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Xu Youwen [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Carter, Pauline [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); King, Payton [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Constanzo, Jasmine R. [Department of Chemistry, Fordham University, Bronx, NY 10458 (United States); Ciaccio, James A. [Department of Chemistry, Fordham University, Bronx, NY 10458 (United States); Fowler, Joanna S. [Medical Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Department of Chemistry, State University of New York at Stony Brook, Stony Brook, NY 11794-3400 (United States); Department of Psychiatry, Mount Sinai School of Medicine, New York, NY 10029 (United States)

    2007-07-15

    Introduction: (3E)-3-[(2,4-dimethoxyphenyl)methylene]-3,4,5,6-tetrahydro-2,3'-bipyridine (GTS-21), a partial {alpha}7 nicotinic acetylcholine receptor agonist drug, has recently been shown to improve cognition in schizophrenia and Alzheimer's disease. One of its two major demethylated metabolites, 4-OH-GTS-21, has been suggested to contribute to its therapeutic effects. Methods: We labeled GTS-21 in two different positions with carbon-11 ([2-methoxy-{sup 11}C]GTS-21 and [4-{sup 11}C]GTS-21) along with two corresponding demethylated metabolites ([2-methoxy-{sup 11}C]4-OH-GTS-21 and [4-methoxy-{sup 11}C]2-OH-GTS-21) for pharmacokinetic studies in baboons and mice with positron emission tomography (PET). Results: Both [2-{sup 11}C]GTS-21 and [4-methoxy-{sup 11}C]GTS-21 showed similar initial high rapid uptake in baboon brain, peaking from 1 to 3.5 min (0.027-0.038%ID/cc) followed by rapid clearance (t {sub 1/2}<15 min), resulting in low brain retention by 30 min. However, after 30 min, [2-methoxy-{sup 11}C]GTS-21 continued to clear while [4-methoxy-{sup 11}C]GTS-21 plateaued, suggesting the entry of a labeled metabolite into the brain. Comparison of the pharmacokinetics of the two labeled metabolites confirmed expected higher brain uptake and retention of [4-methoxy-{sup 11}C]2-OH-GTS-21 (the labeled metabolite of [4-methoxy-{sup 11}C]GTS-21) relative to [2-methoxy-{sup 11}C]4-OH-GTS-21 (the labeled metabolite of [2-methoxy-{sup 11}C]GTS-21), which had negligible brain uptake. Ex vivo studies in mice showed that GTS-21 is the major chemical form in the mouse brain. Whole-body dynamic PET imaging in baboon and mouse showed that the major route of excretion of C-11 is through the gallbladder. Conclusions: The major findings are as follows: (a) extremely rapid uptake and clearance of [2-methoxy-{sup 11}C]GTS-21 from the brain, which may need to be considered in developing optimal dosing of GTS-21 for patients, and (b) significant brain uptake of 2-OH-GTS-21, suggesting that it might contribute to the therapeutic effects of GTS-21. This study illustrates the value of comparing different label positions and labeled metabolites to gain insight on the behavior of a central nervous system drug and its metabolites in the brain, providing an important perspective on drug pharmacokinetics.

  17. Spectroscopic and Quantum Mechanical Calculation Study of the Effect of Isotopic Substitution on NIR Spectra of Methanol.

    Science.gov (United States)

    Grabska, Justyna; Czarnecki, Mirosław A; Beć, Krzysztof B; Ozaki, Yukihiro

    2017-10-19

    In this work, we studied methanol and its deuterated derivatives (CH 3 OH, CH 3 OD, CD 3 OH, CD 3 OD) by NIR spectroscopy and anharmonic quantum chemical calculations. Vibrational bands corresponding to up to three quanta transitions (first and second overtones, binary and ternary combination modes) were predicted by the use of the VPT2 route. The accuracy of prediction of NIR modes was evaluated through density functional theory (DFT) with selected density functionals and basis sets. On the basis of the theoretical NIR spectra, detailed band assignments for all studied molecules were proposed. It was found that the pattern of bands in NIR spectra of deuterated methanols can be used for identification of isotopically equalized forms. Calculations of NIR spectra of all possible forms of CXXXOX (X = H, D) molecules demonstrated that the isotopic contamination can be identified due to a coexistence of bands specific to OH and OD groups. Also, bands from partially deuterated methyl groups can be distinguished in NIR spectra. Since the VPT2 framework is known to be sensitive to inaccuracy in the case of highly anharmonic modes, we obtained an independent insight by numerical solving of the time-independent Schrödinger equation corresponding to the O-X stretching mode scanned within -0.4 to 2.0 Å over a dense grid of 0.005 Å. This way the energies of vibrational levels of the CX1X2X3OX4 (X = H, D) isotopomers and the corresponding transition frequencies were obtained with high accuracy (<0.1 cm -1 ). The change in normal coordinate influences the reduced mass of the oscillator and thus its frequency. Our results lead to a conclusion that the effect of deuterization of the methyl group introduces a very specific and consistent frequency shift of the first overtone of the O-X stretching mode depending on the substitution of X1, X2, or X3 positions (<2 cm -1 ). However, the pattern of this shift is not reproduced accurately and is also largely overestimated by VPT2

  18. Quantification of the selective activation of C--H bonds in short chain alkanes: The reactivity of ethane, propane, isobutane, n-butane, and neopentane on Ir(111)

    International Nuclear Information System (INIS)

    Johnson, D.F.; Weinberg, W.H.

    1995-01-01

    The initial probabilities of precursor-mediated, dissociative chemisorption of the saturated hydrocarbons 13 C-labeled ethane, propane, isobutane, n-butane, and neopentane on the close-packed Ir(111) surface have been measured. The selective activation of primary (1 degree), secondary (2 degree), and tertiary (3 degree) C--H bonds has been quantified by examining the reactivities of the selectively deuterated isotopomers of propane, C 3 H 8 , CH 3 CD 2 CH 3 , and C 3 D 8 , and of isobutane, (CH 3 ) 3 CH, (CH 3 ) 3 CD, and (CD 3 ) 3 CH. With respect to the bottom of the physically adsorbed well for each hydrocarbon, the apparent C--H bond activation energies have been found to be 10.4±0.3 kcal/mol (ethane), 11.4±0.3 kcal/mol (propane), 11.5±0.3 kcal/mol (n-butane), 11.3±0.3 kcal/mol (i-butane), and 11.3±0.3 kcal/mol (neopentane). For all the alkanes examined, the ratios of the preexponential factors of the rate coefficients of reaction and desorption are 1x10 -2 . The C--D bond activation energies are higher than the corresponding C--H bond activation energies by 480 cal/mol (ethane), 630 cal/mol (propane), and 660 cal/mol (i-butane). By analyzing the primary kinetic isotope effects for the selectively deuterated isotopomers of propane and isobutane, the 2 degree C--H bond activation energy is found to be 310±160 cal/mol less than the 1 degree C--H bond activation energy on this surface, and similarly, 3 degree C--H bond cleavage is less by 80±70 cal/mol. The quantification of the branching ratios within the C--H bond activation channel for propane and isobutane on this surface shows that the formation of 1 degree-alkyl intermediates is, in general, favored over the formation of either 2 degree- or 3 degree-alkyl intermediates. (Abstract Truncated)

  19. Hydrogenation/deuteration of the Si -SiO2 interface: Atomic-scale mechanisms and limitations

    Science.gov (United States)

    Tsetseris, L.; Pantelides, S. T.

    2005-03-01

    The mechanisms responsible for exchange of hydrogen with deuterium at the Si -SiO2 interfaces are analyzed through first-principles calculations. The associated reaction barrier is found to be 1.94 eV, in agreement with experiments of Cheng et al. [IEEE Electron. Device Lett. 22, 203 (2001); Cheng et al.J. Appl. Phys. 90, 6536 (2001)] that studied the kinetics of the phenomenon through electrical measurements. The substitution of hydrogen by deuterium can be limited by another possible process, the breakup of the D2 molecule to a pair of Si-D bonds, which has a similar barrier.

  20. Body composition using deuterated water, index of insulin resistance and cortisol levels in Costa Rican school in the metropolitan area

    International Nuclear Information System (INIS)

    Valverde Vindas, Allan Ignacio

    2014-01-01

    Body composition in the Costa Rican child population is evaluated and analyzed to determine the relationship with the index of insulin resistance and serum cortisol levels. 113 children in the metropolitan area were studied using deuterium isotope techniques as reference method for overweight and obesity. Morning cortisol levels were determined by immunoassay techniques (ELISA). The insulin resistance index of 113 Costa Rican boys and girls is obtained by the homeostatic method and the relationship between body composition with index of insulin resistance or levels of cortisol [es

  1. Breath analysis of ammonia, volatile organic compounds and deuterated water vapor in chronic kidney disease and during dialysis

    Czech Academy of Sciences Publication Activity Database

    Davies, S. J.; Španěl, Patrik; Smith, D.

    2014-01-01

    Roč. 6, č. 6 (2014), s. 843-857 ISSN 1757-6180 Institutional support: RVO:61388955 Keywords : ion-flow tube * reaction-mass-spectrometry * trace gas analysis Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 3.003, year: 2014

  2. Enzymatic preparation of α- and β-deuterated or tritiated amino acids with l-methionine γ-lyase

    International Nuclear Information System (INIS)

    Esaki, N.; Sawada, S.; Tanaka, H.; Soda, K.

    1982-01-01

    L-Methionine γ-lyase catalyzes the exchange of α- and β-hydrogens of L-methionine and S-methyl-L-cysteine with deuterium or tritium of solvents. The rate of α-hydrogen exchange with deuterium was about 40 times faster than that of the elimination reactions. The deuterium and tritium were exchanged also with the α- and β-hydrogens of the straight-chain amino acids which do not undergo the elimination: L-alanine, L-α-aminobutyrate, L-norvaline, and L-norleucine. No exchange occurs for the D-isomers, acidic L-amino acids, basic L-amino acids, and branched-chain L-amino acids, although α-hydrogen of glycine, L-trypotophan, and L-phenylalanine is exchanged slowly. These enzymatic hydrogen-exchange reactions facilitate specific labeling of the L-amino acids with deuterium and tritium

  3. Tracing gluconeogenesis with deuterated water: measurement of low deuterium enrichments on carbons 6 and 2 of glucose.

    Science.gov (United States)

    Hazey, J W; Yang, D; Powers, L; Previs, S F; David, F; Beaulieu, A D; Puchowicz, M A; Potter, J L; Palmquist, D L; Brunengraber, H

    1997-05-15

    The contribution of gluconeogenesis to glucose production in vivo can be measured by enriching body water with 0.5% 2H2O and measuring the glucose labeling ratio C6/C2 (Landau et al., J. Clin. Invest. 95, 172-178, 1995). We present further refinements of the measurements of the 2H enrichments on C6 and C2 of glucose. The transfer of 2H from C6 of glucose to hexamethylenetetramine (HMT) and extraction in preparation for gas chromatography-mass spectrometry can be done in a single test tube, without distillation of the intermediate formaldehyde. In addition, extraction of small amounts of HMT is greatly improved by making a HMT-iodine adduct. For C2, glucose is reduced to sorbitol, and 2H on C2 is transferred enzymatically to [U-13C3]pyruvate, forming [U-13C3,2-2H]lactate. The latter is assayed by negative chemical ionization gas chromatography-mass spectrometry of the pentafluorobenzyl derivative. The natural enrichment of the [U-13C3]lactyl ion is only 0.4%, allowing measurements of 2H enrichment down to 0.1%. These techniques were used in dogs infused with 2H2O and in isolated rat livers perfused with buffer containing 1 to 5% 2H2O. Our data reveal a difference in the rate of labeling of C6 and C2 of glucose in vivo. Lastly, in cows infused with [6,6-2H2]glucose, we show that the turnover of glucose can be economically measured by assaying low tracer enrichment (down to 0.1%) via hexamethylenetetramine.

  4. Quantitative determination of sulfur containing wine odorants at sub-ppb levels. 1. Synthesis of the deuterated analogues.

    Science.gov (United States)

    Kotseridis, Y; Ray, J L; Augier, C; Baumes, R

    2000-12-01

    [2H10]-4-Sulfanyl-4-methylpentan-2-one (d10-SMP), [2H2]-3-sulfanylhexan-1-ol (d2-3SH), and [2H5]-3-sulfanylhexyl acetate (d5-3SHAc), the labeled analogues of impact odorants of wines and other foods, were synthesized to be used for the quantitative determination of the natural compounds in white and red wines by stable isotope dilution assay. The sulfidation was achieved by Michael addition, on mesityl oxide or ethyl hex-2-enoate, respectively, of the sulfhydryl anion generated in situ from triphenylsilanethiol and potassium fluoride under phase transfer conditions. The labeling of 4-sulfanyl-4-methylpentan-2-one (SMP) was obtained from the commercial starting material, [2H6]acetone, so that this method could be used to synthesize 13C-labeled SMP from 13C-labeled acetone. The labeling of 3-sulfanylhexan-1-ol (3SH) and 3-sulfanylhexyl acetate (3SHAc) was obtained from reduction with lithium aluminum deuteride of the Michael adduct ethyl 3-sulfanylhexanoate and [2H3]-acetylation. During the synthesis, 3SH and 3SHAc were partially oxidized to their disulfide, which were reduced back to the thiols by an additional reduction step; the tertiary thiol SMP was less sensitive to this oxidation.

  5. Influence of Murchison or Allende minerals on hydrogen-deuterium exchange of amino acids

    Science.gov (United States)

    Lerner, N. R.

    1995-04-01

    Deuterium-enriched amino acids occur in the Murchison carbonaceous chrondrite. This meteorite underwent a period of aqueous alteration with isotopically light water. With the objective of setting limits on the conditions of aqueous alteration, the exchange of the carbon-bonded hydrogen atoms of amino acids with D 2O has been studied from 295 to 380 K as a function of time and meteorite/heavy water ratio. The amount of Murchison or Allende dust present has a significant effect on the rate and amount of hydrogen-deuterium exchange observed. At elevated temperatures, the a-hydrogens of all the amino acids studied were found to exchange with deuterium. In glycine and aspartic acid, this process resulted in total exchange of the carbon-bonded hydrogen. A completely deuterated isotopomer of alanine was produced in significant quantities only when the rock/water ratio was greater than 0.5. No exchange of carbonbonded hydrogens was observed in the case of amino acids which do not possess an α-hydrogen atom. The rates of H/D exchange for amino acids observed here did not correspond to deuterium enrichment of the amino acids in the Murchison meteorite. These results suggest that H/D exchange with water had a negligible effect on the observed deuterium enrichment of amino acids found in Murchison and that the temperature at which the amino acids were exposed to liquid water was close to 273 K.

  6. Excited State Structural Dynamics of Carotenoids and Charge Transfer Systems

    International Nuclear Information System (INIS)

    Van Tassle, Aaron Justin

    2006-01-01

    This dissertation describes the development and implementation of a visible/near infrared pump/mid-infrared probe apparatus. Chapter 1 describes the background and motivation of investigating optically induced structural dynamics, paying specific attention to solvation and the excitation selection rules of highly symmetric molecules such as carotenoids. Chapter 2 describes the development and construction of the experimental apparatus used throughout the remainder of this dissertation. Chapter 3 will discuss the investigation of DCM, a laser dye with a fluorescence signal resulting from a charge transfer state. By studying the dynamics of DCM and of its methyl deuterated isotopomer (an otherwise identical molecule), we are able to investigate the origins of the charge transfer state and provide evidence that it is of the controversial twisted intramolecular (TICT) type. Chapter 4 introduces the use of two-photon excitation to the S1 state, combined with one-photon excitation to the S2 state of the carotenoid beta-apo-8'-carotenal. These 2 investigations show evidence for the formation of solitons, previously unobserved in molecular systems and found only in conducting polymers Chapter 5 presents an investigation of the excited state dynamics of peridinin, the carotenoid responsible for the light harvesting of dinoflagellates. This investigation allows for a more detailed understanding of the importance of structural dynamics of carotenoids in light harvesting

  7. A quantum generalization of intrinsic reaction coordinate using path integral centroid coordinates

    International Nuclear Information System (INIS)

    Shiga, Motoyuki; Fujisaki, Hiroshi

    2012-01-01

    We propose a generalization of the intrinsic reaction coordinate (IRC) for quantum many-body systems described in terms of the mass-weighted ring polymer centroids in the imaginary-time path integral theory. This novel kind of reaction coordinate, which may be called the ''centroid IRC,'' corresponds to the minimum free energy path connecting reactant and product states with a least amount of reversible work applied to the center of masses of the quantum nuclei, i.e., the centroids. We provide a numerical procedure to obtain the centroid IRC based on first principles by combining ab initio path integral simulation with the string method. This approach is applied to NH 3 molecule and N 2 H 5 - ion as well as their deuterated isotopomers to study the importance of nuclear quantum effects in the intramolecular and intermolecular proton transfer reactions. We find that, in the intramolecular proton transfer (inversion) of NH 3 , the free energy barrier for the centroid variables decreases with an amount of about 20% compared to the classical one at the room temperature. In the intermolecular proton transfer of N 2 H 5 - , the centroid IRC is largely deviated from the ''classical'' IRC, and the free energy barrier is reduced by the quantum effects even more drastically.

  8. Excited State Structural Dynamics of Carotenoids and ChargeTransfer Systems

    Energy Technology Data Exchange (ETDEWEB)

    Van Tassle, Aaron Justin [Univ. of California, Berkeley, CA (United States)

    2006-01-01

    This dissertation describes the development andimplementation of a visible/near infrared pump/mid-infrared probeapparatus. Chapter 1 describes the background and motivation ofinvestigating optically induced structural dynamics, paying specificattention to solvation and the excitation selection rules of highlysymmetric molecules such as carotenoids. Chapter 2 describes thedevelopment and construction of the experimental apparatus usedthroughout the remainder of this dissertation. Chapter 3 will discuss theinvestigation of DCM, a laser dye with a fluorescence signal resultingfrom a charge transfer state. By studying the dynamics of DCM and of itsmethyl deuterated isotopomer (an otherwise identical molecule), we areable to investigate the origins of the charge transfer state and provideevidence that it is of the controversial twisted intramolecular (TICT)type. Chapter 4 introduces the use of two-photon excitation to the S1state, combined with one-photon excitation to the S2 state of thecarotenoid beta-apo-8'-carotenal. These 2 investigations show evidencefor the formation of solitons, previously unobserved in molecular systemsand found only in conducting polymers Chapter 5 presents an investigationof the excited state dynamics of peridinin, the carotenoid responsiblefor the light harvesting of dinoflagellates. This investigation allowsfor a more detailed understanding of the importance of structuraldynamics of carotenoids in light harvesting.

  9. Association equilibrium constants and populations of clusters (H2O)n(g) and (D2O)n(g): differences between isotopomers and a possible relation to isotope enrichment

    International Nuclear Information System (INIS)

    Slanina, Z.

    1986-01-01

    Equilibrium constants of H 2 O(g) and D 2 O(g) associations to clusters (H 2 O) n (g) and (D 2 O) n (g) were calculated on the basis of the ab initio SCF CI MCY-B water-water pair potential. Populations of the components of equilibrium cluster mixtures were evaluated at various temperatures and pressures for both isotopomeric series. Differences between the H and D steam are pointed out and possible consequences are discussed. (author)

  10. Sub-Doppler and Doppler Spectroscopy of DCN Isotopomers in the Terahertz Region: Ground and First Excited Bending States (.nu.1 .nu.2 .nu.3) =0 1ef O)

    Czech Academy of Sciences Publication Activity Database

    Brünken, S.; Fuchs, U.; Lewen, F.; Urban, Štěpán; Giesen, T.; Winnewisser, G.

    2004-01-01

    Roč. 225, č. 2 (2004), s. 152-161 ISSN 0022-2852 R&D Projects: GA ČR GA203/01/1274; GA MŠk ME 445 Institutional research plan: CEZ:AV0Z4040901 Keywords : molecular spectroscopy * sub-Doppler spectroscopy * high-resolution spectroscopy Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 1.292, year: 2004

  11. X-ray diffraction and inelastic neutron scattering study of 1:1 tetramethylpyrazine chloranilic acid complex: temperature, isotope, and pressure effects.

    Science.gov (United States)

    Prager, M; Pietraszko, A; Sobczyk, L; Pawlukojć, A; Grech, E; Seydel, T; Wischnewski, A; Zamponi, M

    2006-11-21

    The x-ray diffraction studies of the title complex were carried out at room temperature and 14 K for H/D (in hydrogen bridge) isotopomers. At 82 K a phase transition takes place leading to a doubling of unit cells and alternation of the hydrogen bond lengths linking tetramethylpyrazine (TMP) and chloranilic acid molecules. A marked H/D isotope effect on these lengths was found at room temperature. The elongation is much smaller at 14 K. The infrared isotopic ratio for O-H(D)...N bands equals to 1.33. The four tunnel splittings of methyl librational ground states of the protonated complex required by the structure are determined at a temperature T=4.2 K up to pressures P=4.7 kbars by high resolution neutron spectroscopy. The tunnel mode at 20.6 microeV at ambient pressure shifts smoothly to 12.2 microeV at P=3.4 kbars. This is attributed to an increase of the strength of the rotational potential proportional to r(-5.6). The three other tunnel peaks show no or weak shifts only. The increasing interaction with diminishing intermolecular distances is assumed to be compensated by a charge transfer between the constituents of deltae/e approximately 0.02 kbar(-1). The phase transition observed between 3.4 and 4.7 kbars leads to increased symmetry with only two more intense tunneling bands. In the isotopomer with deuterated hydrogen bonds and P=1 bar all tunnel intensities become equal in consistency with the low temperature crystal structure. The effect of charge transfer is confirmed by a weakening of rotational potentials for those methyl groups whose tunnel splittings were independent of pressure. Density functional theory calculations for the model TMP.(HF)2 complex and fully ionized molecule TMP+ point out that the intramolecular rotational potential of methyl groups is weaker in the charged species. They do not allow for the unequivocal conclusions about the role of the intermolecular charge transfer effect on the torsional frequencies.

  12. Facile synthesis of deuterated and [14C]labeled analogues of vanillin and curcumin for use as mechanistic and analytical tools

    Science.gov (United States)

    Gordon, Odaine N.; Graham, Leigh A.; Schneider, Claus

    2014-01-01

    Curcumin is a dietary diphenol with antioxidant, antinflammatory and antitumor activity. We describe facile procedures for the synthesis of [14C2]curcumin (4 mCi/mmol), [d6]curcumin, [d3]curcumin, [13C5]curcumin, and [d6]bicyclopentadione, the major oxidative metabolite of curcumin. We also describe synthesis of the labeled building blocks [14C]vanillin, [d3]vanillin, and [13C5]acetylacetone. The overall molar yields of the labeled products were 52% ([14C]) and 47% ([d3]) for vanillin and 25% ([14C2]) and 27% ([d6]) for curcumin. The compounds can be used as radiotracers in biotransformation studies and as isotopic standards for mass spectrometry-based quantification in pharmacokinetic analyses. PMID:24339007

  13. Equation of state and phase transition of deuterated ammonia monohydrate (ND3.D2O) measured by high-resolution neutron powder diffraction up to 500 MPa.

    Science.gov (United States)

    Fortes, A Dominic; Suard, Emmanuelle; Lemée-Cailleau, Marie-Hélène; Pickard, Christopher J; Needs, Richard J

    2009-10-21

    We describe the results of a neutron powder diffraction study of perdeuterated ammonia monohydrate (AMH, ND(3).D(2)O) carried out in the range 102high-resolution diffractometer at the Institut Laue-Langevin. This paper reports observations of the phase transformation from the low-pressure P2(1)2(1)2(1) phase (AMH I) to the high-pressure Pbca phase (AMH II) at 351 MPa, and measurements which have allowed us to determine the volumetric and axial incompressibilities of both polymorphs. At 180 K, the fitted third order Birch-Murnaghan equation of state of AMH I has parameters, V(0)=248.00(2) A(3), K(0)=7.33(3) GPa with the first pressure derivative of K(0) fixed at the value obtained in ab initio calculations, (partial differentialK(0)/partial differentialP)(T)=K(0)'=5.3; the implied value of the second derivative is therefore (partial differential(2)K(0)/partial differentialP(2))(T)=K(0)"=-0.94(1) GPa(-1). At 351 MPa, we observed that the transition from AMH I to AMH II occurred over a period of 90 min, with an associated reduction in molar volume of 4.6% and an increase in the incompressibility of 19.6%.

  14. Sodalite Cancrinite Nepheline Syenite of Mendanha Massif, State of Rio de Janeiro, Brazil, Called Commercially Blue Guanabara Granite, and its Origin from Deuteric Metasomatism

    Directory of Open Access Journals (Sweden)

    Akihisa Motoki

    2015-01-01

    Full Text Available Este artigo apresenta observações de campo, descrições petrográficas e considerações genéticas do sodalita cancrinita nefelina sienito, chamado comercialmente de Granito Cinza Azul Guanabara, que se encontra na zona de contato sudoeste da intrusão alcalina félsica de Mendanha, RJ. Esta rocha ornamental ocorre ao longo do eixo central de um dique sienítico com 15 m de largura. A cor macroscópica em rocha total é caracterizada por saturação baixa (S=5~7 e clareza média (B~62. A cor de minerais opacos tem clareza relativamente alta (B~28. O feldspato alcalino é comumente alterado em muscovita. Os feldspatóides são presentes nos espaços intersticiais do arcabouço de feldspato alcalino. O anfibólio e biotita são alterados em minerais opacos e vermiculita, apresentando pseudomorfo. Os minerais acessórios são magnetita primária e titanita. Existe uma significativa quantidade de carbonatos com quantidade modal de 6,8%, constituindo agregados de forma irregular ou preenchendo espaços. A cor macroscópica dos agregados de feldspatóides varia de azul profundo para azul claro de acordo com o teor relativo de sodalita. A sodalita e cancrinita são originadas de nefelina e foram formadas através de metassomatismo deutérico do fluído rico em Cl

  15. Metabolite kinetics: formation of acetaminophen from deuterated and nondeuterated phenacetin and acetanilide on acetaminophen sulfation kinetics in the perfused rat liver preparation

    International Nuclear Information System (INIS)

    Pang, K.S.; Waller, L.; Horning, M.G.; Chan, K.K.

    1982-01-01

    The role of hepatic intrinsic clearance for metabolite formation from various precursors on subsequent metabolite elimination was was investigated in the once-through perfused rat liver preparation. Two pairs of acetaminophen precursors: [ 14 C] phenacetin-d5 and [ 3 H] phenacetin-do, [ 14 C] acetanilide and [ 3 H] phenacetin were delivered by constant flow (10 ml/min/liver) either by normal or retrograde perfusion to the rat liver preparations. The extents of acetaminophen sulfation were compared within the same preparation. The data showed that the higher the hepatocellular activity (intrinsic clearance) for acetaminophen formation, the greater the extent of subsequent acetaminophen sulfation. The findings were explained on the basis of blood transit time and metabolite duration time. Because of blood having only a finite transit time in liver, the longer the drug requires for metabolite formation, the less time will remain for metabolite sulfation and the less will be the degree of subsequent sulfation. Conversely, when the drug forms the primary metabolite rapidly, a longer time will remain for the metabolite to be sulfated in liver to result in a greater degree of metabolite sulfation. Finally, the effects of hepatic intrinsic clearances for metabolite formation and zonal distribution of enzyme systems for metabolite formation and elimination in liver are discussed

  16. Injection of deuterated water into the pulmonary/alveolar circulation; measurement of HDO in exhaled breath and implications to breath analysis

    Czech Academy of Sciences Publication Activity Database

    Tan, B. K.; Davies, S. J.; Španěl, Patrik; Smith, D.

    2012-01-01

    Roč. 6, č. 3 (2012), 036005 ISSN 1752-7155 Institutional support: RVO:61388955 Keywords : total body water * afterglow mass spectrometry * deuterium abundance Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 2.571, year: 2012

  17. Dispersal kinetics of deuterated water in the lungs and airways following mouth inhalation: real-time breath analysis by flowing afterglow mass spectrometry (FA-MS)

    Czech Academy of Sciences Publication Activity Database

    Tan, B. K.; Smith, D.; Španěl, Patrik; Davies, S. J.

    2010-01-01

    Roč. 4, č. 1 (2010), 017109 ISSN 1752-7155 Institutional research plan: CEZ:AV0Z40400503 Keywords : mass spectrometry * breath analysis * pulmonary-edema Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 1.828, year: 2010

  18. Catalytic isomerization of ethylenic hydrocarbons. XII. Isomerization of 2-butenes selectively deuterated in the allylic and vinylic positions over alumina and silica-alumina

    International Nuclear Information System (INIS)

    Perot, G.; Guisnet, M.; Maurel, R.

    1976-01-01

    The isomerization of 2,3-d 2 - and 1,4-d 6 -cis-butenes was carried out on alumina and silica-alumina catalysts. Over both catalysts, double-bond shift is closely related to exchange between the allylic hydrogens of the reactant and the catalyst. On the other hand, it becomes apparent from the reported data that cis-trans isomerization proceeds through two different paths: a mechanism (I) involving exchange between the catalyst and the vinylic hydrogens of the reactant and an ''intramolecular'' mechanism (II) without any exchange between the reactant and the catalyst. It is shown that both double-bond shift and cis-trans reaction by mechanism I can occur on the two catalysts by a stereospecific carbonium ion mechanism while mechanism II is not fully understood

  19. Low temperature heat capacity measurements of the spin-liquid states of hydrogenated and deuterated κ-(BEDT-TTF)2Cu2(CN)3

    International Nuclear Information System (INIS)

    Yamashita, S.; Yamamoto, T.; Nakazawa, Y.

    2010-01-01

    Heat capacity measurements of organic triangular lattice compound κ-(BEDT-TTF) 2 Cu 2 (CN) 3 were performed to discuss the low energy excitations from the spin-liquid ground states. Existence of the T-linear electronic coefficient with finite electronic heat capacity coefficient γ was confirmed in three different samples from different batches, although small sample dependence was observed in the absolute values of the heat capacities. Concerning the sample in which hydrogen atoms in ethylene group in BEDT-TTF molecule have been substituted by deuterons, we have observed almost similar thermodynamic behavior as the hydrogenated sample. The absence of drastic change of electronic properties of this compound is consistent with the electronic phase diagram given by Kurosaki et al. [11] (Phys. Rev. Lett. 95 (2005) 17001). The obtained data are well consistent with the previous heat capacity experiments. The existence of the γ term demonstrates that the excitations from the quantum spin-liquid states show a gapless behavior at least down to 0.7 K.

  20. Inelastic neutron scattering study of the Cs5H3(SO4)4 x 0.5H2O crystal and its deuterated analog

    International Nuclear Information System (INIS)

    Lushnikov, S.G.; Gvasaliya, S.N.; Belushkin, A.V.; Natcaniec, I.; Smirnov, L.S.; Dolbinina, V.V.; Shuvalov, L.A.

    1999-01-01

    Complete text of publication follows. Cs 5 H 3 (SO 4 ) 4 x 0.5H 2 O (PCTS) is a representative of superprotonic crystals, which have a dynamically disordered network of partially occupied hydrogen bonds in the high-temperature phase. Recent investigation of these crystals by Brillouin light scattering and neutron scattering revealed the isotopic effect: the disappearance of the high temperature phase transition in deuturated PCTS compound - Cs 5 D 3 (SO 4 ) 4 x 0.5D 2 O (DPCTS) [1]. For continuation these studies in the low temperature phase the inelastic neutron scattering (INS) was used. Experiments were carried out on NERA spectrometer (JINR, Dubna) on powdered samples of PCTS and DOTCS in the temperature range 20 - 30 K. The difference of diffraction spectra of PCTS and DPCTS with a different deuterium content was observed. Dependence of inelastic neutron scattering spectra versus deuterium concentration at different temperatures is discussed. (author)

  1. Calculation of rate constants for dissociative attachment of low-energy electrons to hydrogen halides HCl, HBr, and HI and their deuterated analogs

    International Nuclear Information System (INIS)

    Houfek, Karel; Cizek, Martin; Horacek, Jiri

    2002-01-01

    Calculations of rate constants for the process of dissociative attachment of low-energy electrons to hydrogen halides HCl, HBr, and HI and for the reverse process of associative detachment based on the nonlocal resonance model are reported. The calculated data are of importance for the modeling of plasma processes, environmental chemistry, etc. The calculated dissociative attachment rate constants are found to be in good agreement with existing experimental data. It is shown that at low temperatures the rate constants are very sensitive to small changes of the parameters of the nonlocal resonance model used for the calculation of the rate constants and represent a severe test of the theory. The isotopic effect and its dependence on the temperature is also discussed. The calculations of rate constants for the reverse process of associative detachment are also reported and discussed

  2. d-Glucose and d-mannose-based metabolic probes. Part 3: Synthesis of specifically deuterated d-glucose, d-mannose, and 2-deoxy-d-glucose

    OpenAIRE

    Fokt, Izabela; Skora, Stanislaw; Conrad, Charles; Madden, Timothy; Emmett, Mark; Priebe, Waldemar

    2012-01-01

    Altered carbohydrate metabolism in cancer cells was first noted by Otto Warburg more than 80 years ago. Upregulation of genes controlling the glycolytic pathway under normoxia, known as the Warburg effect, clearly differentiates malignant from non-malignant cells. The resurgence of interest in cancer metabolism aims at a better understanding of the metabolic differences between malignant and non-malignant cells and the creation of novel therapeutic and diagnostic agents exploiting these diffe...

  3. Quantification of the putative neurotoxin 2-amino-3-(methylamino)propanoic acid (BMAA) in cycadales: analysis of the seeds of some members of the family Cycadaceae.

    Science.gov (United States)

    Duncan, M W; Kopin, I J; Crowley, J S; Jones, S M; Markey, S P

    1989-01-01

    Over the past 30 years there have been attempts to link the unusually high incidence of amyotrophic lateral sclerosis (ALS) among the Chamorros native to the island of Guam to the consumption of the seeds of Cycas circinalis L., the false sago palm. In support of this relationship it was recently shown that, when given to primates, 2-amino-3-(methylamino)-propanoic acid (BMAA), a minor cycad component, can cause selective degeneration of upper and lower motor neurons in the spinal cord and clinical features similar to those of ALS. In order to test the relationship between ALS and cycads, we have developed a sensitive and precise gas chromatographic/mass spectrometric (GC/MS) assay for BMAA which allows direct assessment of the BMAA content in foods and is directly applicable to the assay of BMAA in biologic tissues and fluids. After the addition of a deuterated isotopomer as an internal standard and transesterication with 2-methyl-1-propanol, BMAA was extracted into dichloromethane and then acylated with pentafluoropropionic anhydride before GC/MS. This method permits precise quantification of BMAA in the low picogram/sample range. Direct quantification of the BMAA content in the female gametophyte tissue (endosperm) of a range of cycad seeds collected from Guam confirmed the presence of BMAA at levels of approximately 1 g/g (dry weight). The presence of BMAA in the seed extract was confirmed after derivatization of an aliquot of the extract and GC/MS analysis in the scanning mode. BMAA was found to be present, albeit at lower levels, in the endosperm of the seeds of C. revoluta (0.32 mg/g) and C. media (0.29 mg/g).

  4. Detection of the sulfhydryl groups in proteins with slow hydrogen exchange rates and determination of their proton/deuteron fractionation factors using the deuterium-induced effects on the 13C(beta) NMR signals.

    Science.gov (United States)

    Takeda, Mitsuhiro; Jee, JunGoo; Terauchi, Tsutomu; Kainosho, Masatsune

    2010-05-05

    A method for identifying cysteine (Cys) residues with sulfhydryl (SH) groups exhibiting slow hydrogen exchange rates has been developed for proteins in aqueous media. The method utilizes the isotope shifts of the C(beta) chemical shifts induced by the deuteration of the SH groups. The 18.2 kDa E. coli peptidyl prolyl cis-trans isomerase b (EPPIb), which was selectively labeled with [3-(13)C;3,3-(2)H(2)]Cys, showed much narrower line widths for the (13)C(beta) NMR signals, as compared to those of the proteins labeled with either [3-(13)C]Cys or (3R)-[3-(13)C;3-(2)H]Cys. The (13)C(beta) signals of the two Cys residues of EPPIb, i.e. Cys-31 and Cys-121, labeled with [3-(13)C;3,3-(2)H(2)]Cys, split into four signals in H(2)O/D(2)O (1:1) at 40 degrees C and pH 7.5, indicating that the exchange rates of the side-chain SH's and the backbone amides are too slow to average the chemical shift differences of the (13)C(beta) signals, due to the two- and three-bond isotope shifts. By virtue of the well-separated signals, the proton/deuteron fractional factors for both the SH and amide groups of the two Cys residues in EPPIb could be directly determined, as approximately 0.4-0.5 for [SD]/[SH] and 0.9-1.0 for [ND]/[NH], by the relative intensities of the NMR signals for the isotopomers. The proton NOE's of the two slowly exchanging SH's were clearly identified in the NOESY spectra and were useful for the determining the local structure of EPPIb around the Cys residues.

  5. Fourfold Clusters of Rovibrational Energies in H2Te Studied With an Ab Initio Potential Energy Function

    Science.gov (United States)

    Jensen, Per; Li, Yan; Hirsch, Gerhard; Buenker, Robert J.; Lee, Timothy J.; Arnold, James O. (Technical Monitor)

    1994-01-01

    We report an ab initio investigation of the cluster effect (i.e., the formation of nearly degenerate, four member groups of rotation-vibration energy levels at higher J and K(sub a). values) in the H2Te molecule. The potential energy function has been calculated ab initio at a total of 334 molecular geometries by means of the CCSD(T) method where the (1s-4f) core electrons of Te were described by an effective core potential. The values of the potential energy function obtained cover the region up to around 10,000/cm above the equilibrium energy. On the basis of the ab initio potential, the rotation-vibration energy spectra of H2Te-130 and its deuterated isotopomers have been calculated with the MORBID (Morse Oscillator Rigid Bender Internal Dynamics) Hamiltonian and computer program. In particular, we have calculated the rotational energy manifolds for J less than or = 40 in the vibrational ground state, the upsilon(sub 2) state, the "first triad" (the upsilon(sub l)/upsilon(sub 3)/2upsilon(sub 2) interacting vibrational states), and the "second triad" (the upsilon(sub 1) + upsilon(sub 2/upsilon(sub 2) + upsilon(sub 3)/3upsilon(sub 2) states) of H2Te-130. We find that the cluster formation in H2Te is very similar to those of of H2Se and H2S, which we have studied previously. However, contrary to semiclassical predictions, we do not determine any significant displacement of the clusters towards lower J values relative to H2Se. Hence the experimental observation of the cluster states in H2Te will be at least as difficult as in H2Se.

  6. Comparison of the local binding motifs in the imidazolium-based ionic liquids [EMIM][BF{sub 4}] and [EMMIM][BF{sub 4}] through cryogenic ion vibrational predissociation spectroscopy: Unraveling the roles of anharmonicity and intermolecular interactions

    Energy Technology Data Exchange (ETDEWEB)

    Fournier, Joseph A.; Wolke, Conrad T.; Johnson, Christopher J.; Johnson, Mark A., E-mail: mark.johnson@yale.edu, E-mail: mccoy@chemistry.ohio-state.edu [Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520 (United States); McCoy, Anne B., E-mail: mark.johnson@yale.edu, E-mail: mccoy@chemistry.ohio-state.edu [Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210 (United States)

    2015-02-14

    We clarify the role of the critical imidazolium C{sub (2)}H position (the central C between N atoms in the heterocycle) in the assembly motif of the [EMIM][BF{sub 4}] ionic liquid by analyzing the vibrational spectra of the bare EMIM{sup +} ion as well as that of the cationic [EMIM]{sub 2}[BF{sub 4}]{sup +} (EMIM{sup +} = 1-ethyl-3-methylimidazolium, C{sub 6}H{sub 11}N{sub 2}{sup +}) cluster. Vibrational spectra of the cold, mass-selected ions are obtained using cryogenic ion vibrational predissociation of weakly bound D{sub 2} molecules formed in a 10 K ion trap. The C{sub (2)}H behavior is isolated by following the evolution of key vibrational features when the C{sub (2)} hydrogen, the proposed binding location of the anion to the imidazolium ring, is replaced by either deuterium or a methyl group (i.e., in the EMMIM{sup +} analogue). Strong features in the ring CH stretching region of the bare ion are traced to Fermi resonances with overtones of lower frequency modes. Upon incorporation into the EMIM{sup +} ⋅ ⋅ ⋅ BF{sub 4}{sup −} ⋅ ⋅ ⋅ EMIM{sup +} ternary complex, the C{sub (2)}H oscillator strength is dramatically increased, accounting for the much more complicated patterns derived from the EMIM{sup +} ring CH stretches in the light isotopomer, which are strongly suppressed in the deuterated analogue. Further changes in the spectra that occur when the C{sub (2)}H is replaced by a methyl group are consistent with BF{sub 4}{sup −} attachment directly to the imidazolium ring in an arrangement that maximizes the electrostatic interaction between the molecular ions.

  7. Infrared identification of proton-bound rare-gas dimers (XeHXe)⁺, (KrHKr)⁺, and (KrHXe)⁺ and their deuterated species in solid hydrogen.

    Science.gov (United States)

    Tsuge, Masashi; Kalinowski, Jaroslaw; Gerber, R Benny; Lee, Yuan-Pern

    2015-03-19

    Proton-bound rare-gas dimer (RgHRg)(+), in which Rg represents a rare-gas atom, serves as a prototypical system for proton solvation by inert-gas atoms. Until now, only centrosymmetric species with Rg = Ar, Kr, or Xe have been identified with infrared spectra. We employed electron bombardment during deposition of a mixture of Xe (or Kr) in p-H2 at 3.2 K to prepare (RgHRg)(+). Lines at 847.0 and 972.1 cm(-1) are assigned as the Rg-H-Rg antisymmetric stretching (ν3) mode and its combination with the Rg-H-Rg symmetric stretching (ν1 + ν3) mode of (XeHXe)(+) in solid p-H2, respectively. Lines at 871.1 and 974.0 cm(-1) are assigned as the ν3 and ν1 + ν3 modes of (KrHKr)(+) in solid p-H2, respectively. Slightly shifted and broadened lines were observed for these species in solid n-H2. These results agree satisfactorily with reported experimental values of (XeHXe)(+) and (KrHKr)(+) in solid Xe, Kr, and Ar, and with the quantum-chemically predicted anharmonic vibrational wavenumbers of these species in the gaseous phase; the significant spectral shifts in various matrixes are rationalized with the proton affinities of the hosts. When a mixture of Xe and Kr in p-H2 was used, an additional broad feature at 1284 cm(-1) was observed and assigned as the ν3 mode of (KrHXe)(+) in solid p-H2. This line shifted to 1280 cm(-1) in solid n-H2 and the corresponding line of (KrDXe)(+) was observed at 954 cm(-1) in n-D2. The observations of these lines are new; the wavenumbers significantly blue shifted from those of the centrosymmetric (RgHRg)(+) agree with the quantum-chemically predicted anharmonic vibrational wavenumbers of 1279 cm(-1) for (KrHXe)(+) and 916 cm(-1) for (KrDXe)(+). Analysis of the computational results shows that electronic correlation effects play a much greater role for the asymmetric than for the symmetric species. An interpretation for this is provided.

  8. Synthesis of trans-4,5-epoxy-(E)-2-decenal and its deuterated analog used for the development of a sensitive and selective quantification method based on isotope dilution assay with negative chemical ionization.

    Science.gov (United States)

    Lin, J; Fay, L B; Welti, D H; Blank, I

    1999-10-01

    The volatile compound trans-4,5-epoxy-(E)-2-decenal (1) was synthesized in two steps with good overall yields. The newly developed method is based on trans-epoxidation of (E)-2-octenal with alkaline hydrogen peroxide followed by a Wittig-type chain elongation with the ylide formylmethylene triphenylphosphorane. For the synthesis of [4,5-2H2]-trans-4,5-epoxy-(E)-2-decenal (d-1), [2,3-2H2]-(E)-2-octenal was prepared by reduction of 2-octyn-1-ol with lithium aluminum deuteride and subsequent oxidation of [2,3-2H2]-(E)-2-octen-1-ol with manganese oxide. Compound d1 was used as internal standard for the quantification of 1 by isotope dilution assay. Among various mass spectrometry (MS) ionization techniques tested, negative chemical ionization with ammonia as reagent gas gave best results with respect to both sensitivity and selectivity. The detection limit was found to be at about 1 pg of the analyte introduced into the gas chromatography-MS system.

  9. Reinvestigating 2,5-di(pyridin-2-yl)pyrazine ruthenium complexes : Selective deuteration and Raman spectroscopy as tools to probe ground and excited-state electronic structure in homo- and heterobimetallic complexes

    NARCIS (Netherlands)

    Schulz, M.; Hirschmann, J.; Draksharapu, A.; Singh Bindra, G.; Soman, S.; Paul, A.; Groarke, R.; T. Pryce, M.; Rau, S.; R. Browne, W.; Vos, J.

    2011-01-01

    The mono- (1) and dinuclear (2) ruthenium(II) bis(2,2'-bipyridine) complexes of 2,5-di(pyridin-2-yl)pyrazine (2,5-dpp), for which the UV/Vis absorption and emission as well as electrochemical properties have been described earlier, are reinvestigated here by resonance, surface enhanced and transient

  10. RATE CONSTANTS FOR THE REACTIONS OF OH RADICALS AND CL ATOMS WITH DI-N-PROPYL ETHER AND DI-N-BUTYL ETHER AND THEIR DEUTERATED ANALOGS. (R825252)

    Science.gov (United States)

    Using relative rate methods, rate constants for the gas-phase reactions of OH radicals and Cl atoms with di-n-propyl ether, di-n-propyl ether-d14, di-n-butyl ether and di-n-butyl ether-d18 have been measured at 296 ? 2 K and atmos...

  11. The preparation, identification and properties of chlorophyll derivatives

    Science.gov (United States)

    Katz, J. J.; Pennington, F. C.; Strain, H. H.; Svec, W. A.

    1968-01-01

    In the investigation of 10-hydroxy chlorophylls a and b novel techniques included modification of chromatography and the use of fully-deuterated compounds isolated from fully-deuterated autotropic algae to determine the molecular structure of the chlorophylls.

  12. Department of Nuclear Radiospectroscopy - Overview

    International Nuclear Information System (INIS)

    Jasinski, A.

    2001-01-01

    Full text: Research at the Department of Nuclear Radiospectroscopy encompasses various aspects of nuclear magnetic resonance (NMR) and its applications to solids and to biosystems. Current research activity covers two areas: investigation of molecular dynamics and structures in solids using NMR spectroscopy, and examination of human organs, small animals and plants using MR imaging and localized spectroscopy. MAGNETIC RESONANCE IMAGING LABORATORY Biomedical applications of magnetic resonance imaging (MRI) and spectroscopy (MRS) together with development and modification of the existing hardware were our main topic of research in the year 2000. The following projects have been carried out: * Investigation of the water diffusion tensor in biological systems in vivo and in vitro; * Study of localized MR spectra in the skeletal muscles of the human limbs; * Structure and physiological processes of the tissue and organs in the normal and pathological state studied by MRI and MRS methods; * Generation of the magnetic field gradients and design of highly specialized RF coils for MR localized spectroscopy and MR Imaging. This work has been done in collaboration with Collegium Medicum of the Jagiellonian University and the Institute for Biodiagnostics in Winnipeg, Canada. As far as the hardware and the methodology side are concerned our, tasks in the year 2000 included: * Development and modifications of home-built MR Microscopy based on 8.4T magnet; * Modifications of the 4.7T magnet console; * Designing and optimizing the ergometer used in skeletal muscle research; * Implementation of the fast imaging methods based on the spin echo sequences. MAGNETIC RESONANCE LABORATORY Deuteron NMR spectroscopy was applied to the study of reorientational dynamics and tunnelling rotation of ammonium ion isotopomers. As particular achievements we point out results concerning structure refinement of structure, establishing the symmetry of the rotational potential, and detection of the

  13. Qualitative and quantitative analysis of mixtures of compounds containing both hydrogen and deuterium

    Science.gov (United States)

    Crespi, H. L.; Harkness, L.; Katz, J. J.; Norman, G.; Saur, W.

    1969-01-01

    Method allows qualitative and quantitative analysis of mixtures of partially deuterated compounds. Nuclear magnetic resonance spectroscopy determines location and amount of deuterium in organic compounds but not fully deuterated compounds. Mass spectroscopy can detect fully deuterated species but not the location.

  14. Department of Nuclear Radiospectroscopy - Overview

    International Nuclear Information System (INIS)

    Jasinski, A.

    1999-01-01

    Research at the Department of Nuclear Radiospectroscopy concerns various aspects of the NMR and its applications to solids and to biosystems. The research activity covers: investigation of molecular dynamics and structures in solids using NMR spectroscopy, and investigation of humans, animals and plants using NMR imaging and localized spectroscopy. The MR Laboratory is equipped with a 7.05 T wide bore vertical superconducting magnet (SCM) with a pulse spectrometer. It allows to measure of deuteron NMR spectra at T ≥ 5 K. NMR high resolution spectra for 29 Si, 11 B, 27 Al and 31 P nuclei can be measured using MAS-NMR probe heads. The Magnetic Resonance Imaging Laboratory is equipped with 360 MHz MR microscope based on a 8.4 T narrow bore SCM and a MRI/MRS system based on a 2 T, 31 cm horizontal bore SCM. Magnetic Resonance Laboratory: Molecular reorientation studies aimed at disclosing tunnelling rotation and structural research of amorphous solids were main topics. Realisation of these projects required a development of our NMR pulse spectrometer and theoretical methods. The spectrometer was put into operation in 1997. Recent development was done in the data acquisition by the introduction of a new A/D converter and a pulse programmer. Tunnelling and reorientations of mixed isotope rotors are currently the most interesting topics. For a given deuteration rate of an ammonium compound it was anticipating that deuteron NMR spectra consist of weighted contributions from the following isotopomers: NH 3 D + , NH 2 D 2 + , NH 3 D + and ND 4 + . Each isotopomer provides a characteristic spectral component due to its mobility. Measurements were performed for a number of partially deuterated samples of (NH 4 ) 2 S 2 O 8 , NH 4 ClO 4 , NH 4 PF 6 , (NH 4 ) 2 ZnCl 4 and (NH 4 ) 2 TeCl 6 in the T = 5-100 K. The spectra of NH 3 D + ions are particularly interesting. A new effect of an isotope ordering was observed. The structural investigations of amorphous solids by NMR

  15. Molecular Structures, Vibrational Spectroscopy, and Normal-Mode Analysis of M(2)(C&tbd1;CR)(4)(PMe(3))(4) Dimetallatetraynes. Observation of Strongly Mixed Metal-Metal and Metal-Ligand Vibrational Modes.

    Science.gov (United States)

    John, Kevin D.; Miskowski, Vincent M.; Vance, Michael A.; Dallinger, Richard F.; Wang, Louis C.; Geib, Steven J.; Hopkins, Michael D.

    1998-12-28

    The nature of the skeletal vibrational modes of complexes of the type M(2)(C&tbd1;CR)(4)(PMe(3))(4) (M = Mo, W; R = H, Me, Bu(t)(), SiMe(3)) has been deduced. Metrical data from X-ray crystallographic studies of Mo(2)(C&tbd1;CR)(4)(PMe(3))(4) (R = Me, Bu(t)(), SiMe(3)) and W(2)(C&tbd1;CMe)(4)(PMe(3))(4) reveal that the core bond distances and angles are within normal ranges and do not differ in a statistically significant way as a function of the alkynyl substituent, indicating that their associated force constants should be similarly invariant among these compounds. The crystal structures of Mo(2)(C&tbd1;CSiMe(3))(4)(PMe(3))(4) and Mo(2)(C&tbd1;CBu(t)())(4)(PMe(3))(4) are complicated by 3-fold disorder of the Mo(2) unit within apparently ordered ligand arrays. Resonance-Raman spectra ((1)(delta-->delta) excitation, THF solution) of Mo(2)(C&tbd1;CSiMe(3))(4)(PMe(3))(4) and its isotopomers (PMe(3)-d(9), C&tbd1;CSiMe(3)-d(9), (13)C&tbd1;(13)CSiMe(3)) exhibit resonance-enhanced bands due to a(1)-symmetry fundamentals (nu(a) = 362, nu(b) = 397, nu(c) = 254 cm(-)(1) for the natural-abundance complex) and their overtones and combinations. The frequencies and relative intensities of the fundamentals are highly sensitive to isotopic substitution of the C&tbd1;CSiMe(3) ligands, but are insensitive to deuteration of the PMe(3) ligands. Nonresonance-Raman spectra (FT-Raman, 1064 nm excitation, crystalline samples) for the Mo(2)(C&tbd1;CSiMe(3))(4)(PMe(3))(4) compounds and for Mo(2)(C&tbd1;CR)(4)(PMe(3))(4) (R = H, D, Me, Bu(t)(), SiMe(3)) and W(2)(C&tbd1;CMe)(4)(PMe(3))(4) exhibit nu(a), nu(b), and nu(c) and numerous bands due to alkynyl- and phosphine-localized modes, the latter of which are assigned by comparisons to FT-Raman spectra of Mo(2)X(4)L(4) (X = Cl, Br, I; L = PMe(3), PMe(3)-d(9))(4) and Mo(2)Cl(4)(AsMe(3))(4). Valence force-field normal-coordinate calculations on the model compound Mo(2)(C&tbd1;CH)(4)P(4), using core force constants transferred from a calculation

  16. New Experimental Setup for Boron Isotopes Separation by the Laser Assisted Retardation of Condensation Method.

    Science.gov (United States)

    Lyakhov, Konstantin; Lee, Heon-Ju

    2015-11-01

    Demand in isotopically pure boron is steadily growing in industry and medicine. It makes necessary to search for cheaper ways of isotopes production. We propose a new experimental setup design for boron isotope separation by laser assisted retardation of condensation (SILARC) method based on an energy efficiency use relevant optimization method. This optimization method is based on the transport model for rarefied gas flow dynamics in laser field with frequency tuned for excitation of specific isotopomer. Because product cut and enrichment factor corresponding to the optimal conditions are rather small, target isotopomers should be recovered iteratively.

  17. Collisions of slow polyatomic ions with surfaces: Dissociation and chemical reactions of C2H2+center dot, C2H3+, C2H4+center dot C2H5+, and their deuterated variants C2D2+center dot and C2D4+center dot on room-temperature and heated carbon surfaces

    Czech Academy of Sciences Publication Activity Database

    Jašík, J.; Žabka, Ján; Feketeová, L.; Ipolyi, I.; Märk, T. D.; Herman, Zdeněk

    2005-01-01

    Roč. 109, č. 45 (2005), s. 10208-10215 ISSN 1089-5639 R&D Projects: GA AV ČR IAA4040405; GA AV ČR KSK4040110; GA MŠk LC510 Institutional research plan: CEZ:AV0Z40400503 Keywords : physical chemistry * ion-surface collisions * hydrocarbons Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 2.898, year: 2005

  18. Collisions of slow polyatomic ions with surfaces: Dissociation and chemical reactions of C2H2+ center dot, C2H3+, C2H4+ center dot C2H5+, and their deuterated variants C2D2+ center dot and C2D4+ center dot on room-temperature and heated carbon surfaces

    Czech Academy of Sciences Publication Activity Database

    Jašík, J.; Žabka, Ján; Feketeová, L.; Ipolyi, I.; Märk, T. D.; Herman, Zdeněk

    2005-01-01

    Roč. 109, č. 45 (2005), s. 10208-10215 ISSN 1089-5639 R&D Projects: GA AV ČR IAA4040405; GA AV ČR KSK4040110; GA MŠk LC510 Institutional research plan: CEZ:AV0Z40400503 Keywords : ethanol molecular-ions * hydrocarbon films * internal energy * projectile ions Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 2.898, year: 2005

  19. Small angle neutron scattering study of U(VI) third phase formation ...

    Indian Academy of Sciences (India)

    DHDECMP obtained from Columbia Chemicals was used as such (88%). Deuter- ated dodecane (98%) was obtained from Aldrich Chemical Co. Equal volumes of known concentrations of extractant, DHDECMP in deuterated dodecane and an aqueous acid solution were shaken in a thermostatted water bath for 30 min.

  20. Ideal gas thermodynamic properties for the phenyl, phenoxy, and o-biphenyl radicals

    Science.gov (United States)

    Burcat, A.; Zeleznik, F. J.; Mcbride, B. J.

    1985-01-01

    Ideal gas thermodynamic properties of the phenyl and o-biphenyl radicals, their deuterated analogs and the phenoxy radical were calculated to 5000 K using estimated vibrational frequencies and structures. The ideal gas thermodynamic properties of benzene, biphenyl, their deuterated analogs and phenyl were also calculated.

  1. Elucidation of density profile of self-assembled sitosterol + oryzanol tubules with small-angle neutron scattering

    NARCIS (Netherlands)

    Bot, A.; Gilbert, E.P.; Bouwman, W.G.; Sawalha, H.I.M.; Adel, den R.; Garamus, V.M.; Venema, P.; Linden, van der E.; Flöter, E.

    2012-01-01

    Small-angle neutron scattering (SANS) experiments have been performed on self-assembled tubules of sitosterol and oryzanol in triglyceride oils to investigate details of their structure. Alternative organic phases (deuterated and non-deuterated decane, limonene, castor oil and eugenol) were used to

  2. Solubility of Lead Sulfate in Water and in Sodium Sulfate Solutions: An Experiment in Atomic Absorption Spectrophotometry.

    Science.gov (United States)

    Lehman, Thomas A.; Everett, Wayne W.

    1982-01-01

    Describes a set of undergraduate laboratory experiments which provide experience in deuteration and derivatization procedures applied to infrared spectroscopy. Basic skills in vacuum-line technique are also taught while measuring infrared spectra of deuterated solid samples and demonstrating the value of derivatization as an aid to interpreting…

  3. On a possibility of cold fusion in deuterium-saturated YBa2Cu3O7-x ceramics in superconducting state

    International Nuclear Information System (INIS)

    Lipson, A.G.; Sakov, D.M.; Toporov, Yu.P.; Gromov, V.V.; Deryagin, B.V.

    1991-01-01

    A possibility to generate neutrons by deuterated YBa 2 Cu 3 O 7-x ceramics in superconducting (T c ) and normal (T>T c ) states is studied. The presented data points to a relationship between the processes of cold nuclear fusion and high-temperature superconductivity in YBa 2 Cu 3 O 7-x pellets deuterated at T c (77< T<90 K)

  4. Quantitative importance of the pentose phosphate pathway determined by incorporation of 13C from [2-13C]- and [3-13C]glucose into TCA cycle intermediates and neurotransmitter amino acids in functionally intact neurons

    DEFF Research Database (Denmark)

    Brekke, Eva Marie; Walls, Anne Byriel; Schousboe, Arne

    2012-01-01

    of (13)C-labeled glucose via the PPP does not appear to contribute to the production of releasable lactate, it contributes to labeling of tricarboxylic acid (TCA) cycle intermediates and related amino acids. Based on glutamate isotopomers, it was calculated that PPP activity accounts for ~6% of glucose...

  5. Acute inhibition of hepatic glucose-6-phosphatase does not affect gluconeogenesis but directs gluconeogenic flux toward glycogen in fasted rats - A pharmacological study with the chlorogenic acid derivative S4048

    NARCIS (Netherlands)

    van Dijk, TH; van der Sluijs, FH; Wiegman, CH; Baller, JFW; Gustafson, LA; Burger, HJ; Herling, AW; Kuipers, F; Meijer, AJ; Reijngoud, DJ

    2001-01-01

    Effects of acute inhibition of glucose-6-phosphatase activity by the chlorogenic acid derivative S4048 on hepatic carbohydrate fluxes were examined in isolated rat hepatocytes and in vivo in rats. Fluxes were calculated using tracer dilution techniques and mass isotopomer distribution analysis in

  6. Acute inhibition of hepatic glucose-6-phosphatase does not affect gluconeogenesis but directs gluconeogenic flux toward glycogen in fasted rats. A pharmacological study with the chlorogenic acid derivative S4048

    NARCIS (Netherlands)

    van Dijk, T. H.; van der Sluijs, F. H.; Wiegman, C. H.; Baller, J. F.; Gustafson, L. A.; Burger, H. J.; Herling, A. W.; Kuipers, F.; Meijer, A. J.; Reijngoud, D. J.

    2001-01-01

    Effects of acute inhibition of glucose-6-phosphatase activity by the chlorogenic acid derivative S4048 on hepatic carbohydrate fluxes were examined in isolated rat hepatocytes and in vivo in rats. Fluxes were calculated using tracer dilution techniques and mass isotopomer distribution analysis in

  7. Stable isotope-resolved analysis with quantitative dissolution dynamic nuclear polarization

    DEFF Research Database (Denmark)

    Lerche, Mathilde Hauge; Yigit, Demet; Frahm, Anne Birk

    2018-01-01

    Metabolite profiles and their isotopomer distributions can be studied non-invasively in complex mixtures with NMR. The advent of dissolution Dynamic Nuclear Polarization (dDNP) and isotope enrichment add sensitivity and resolution to such met-abolic studies. Metabolic pathways and networks can...

  8. Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale

    DEFF Research Database (Denmark)

    McCloskey, Douglas; Young, Jamey D.; Xu, Sibei

    2016-01-01

    pathways of traditional MFA models and also covers the additional pathways of purine, pyrimidine, isoprenoid, methionine, riboflavin, coenzyme A, and folate, as well as other biosynthetic pathways. When evaluating the iDM2014 using a set of measured intracellular intermediate and cofactor mass isotopomer...

  9. Effective potential energy curves of the ground electronic state of CH+

    DEFF Research Database (Denmark)

    Sauer, Stephan P. A.; Spirko, Vladimir

    2013-01-01

    This study presents e¿ective (mass-dependent) potential energy curves for the methylidyne cation, which reproduce highly accurately all the available spectral data and allow for evaluation of reliable ro-vibrational wavefunctions of the probed isotopomers. The ro-vibrational wavefunctions...

  10. Revisiting the metathesis of 13C-monolabeled ethane

    KAUST Repository

    Maury, Olivier

    2010-12-13

    The metathesis of 13C-monolabeled ethane leads to the parallel occurrence of degenerate and productive reactions, affording the statistical distribution of the various product isotopomers, which can be rationalized in terms of a mechanistic reaction scheme combining both processes. © 2010 American Chemical Society.

  11. Mechanism and Stereoselectivity of Zeolite-catalysed Sugar Isomerisation in Alcohols

    DEFF Research Database (Denmark)

    Shunmugavel, Saravanamurugan; Riisager, Anders; Taarning, Esben

    2016-01-01

    Glucose isomerisation to fructose can occur by different pathways and the mechanism of zeolite-catalysed glucose isomerisation in methanol has remained incompletely understood. Herein, the mechanism is studied using an 1H-13C HSQC NMR assay resolving different fructose isotopomers. We find that z...

  12. The quantification of gluconeogenesis in healthy men by (2)H2O and [2-(13)C]glycerol yields different results: rates of gluconeogenesis in healthy men measured with (2)H2O are higher than those measured with [2-(13)C]glycerol

    NARCIS (Netherlands)

    Ackermans, M. T.; Pereira Arias, A. M.; Bisschop, P. H.; Endert, E.; Sauerwein, H. P.; Romijn, J. A.

    2001-01-01

    The quantification of gluconeogenesis (GNG) by (2)H2O and [2-(13)C]glycerol and the mass isotopomer dilution analysis of glucose does not involve assumptions regarding the enrichment of the oxaloacetate precursor pool. To compare these two methods we measured GNG in six healthy postabsorptive males

  13. Neutron interrogation systems using pyroelectric crystals and methods of preparation thereof

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Vincent; Meyer, Glenn A.; Falabella, Steven; Guethlein, Gary; Rusnak, Brian; Sampayan, Stephen; Spadaccini, Christopher M.; Wang, Li-Fang; Harris, John; Morse, Jeff

    2017-08-01

    According to one embodiment, an apparatus includes a pyroelectric crystal, a deuterated or tritiated target, an ion source, and a common support coupled to the pyroelectric crystal, the deuterated or tritiated target, and the ion source. In another embodiment, a method includes producing a voltage of negative polarity on a surface of a deuterated or tritiated target in response to a temperature change of a pyroelectric crystal, pulsing a deuterium ion source to produce a deuterium ion beam, accelerating the deuterium ion beam to the deuterated or tritiated target to produce a neutron beam, and directing the ion beam onto the deuterated or tritiated target to make neutrons using a voltage of the pyroelectric crystal and/or an HGI surrounding the pyroelectric crystal. The directionality of the neutron beam is controlled by changing the accelerating voltage of the system. Other apparatuses and methods are presented as well.

  14. Quantitative analysis of deuterium using the isotopic effect on quaternary {sup 13}C NMR chemical shifts

    Energy Technology Data Exchange (ETDEWEB)

    Darwish, Tamim A., E-mail: tamim.darwish@ansto.gov.au [National Deuteration Facility, Australian Nuclear Science and Technology Organisation, Locked Bag 21, Kirrawee DC, NSW 2232 (Australia); Yepuri, Nageshwar Rao; Holden, Peter J. [National Deuteration Facility, Australian Nuclear Science and Technology Organisation, Locked Bag 21, Kirrawee DC, NSW 2232 (Australia); James, Michael [Australian Synchrotron, 800 Blackburn Road, Clayton, Victoria 3168 (Australia)

    2016-07-13

    Quantitative analysis of specifically deuterated compounds can be achieved by a number of conventional methods, such as mass spectroscopy, or by quantifying the residual {sup 1}H NMR signals compared to signals from internal standards. However, site specific quantification using these methods becomes challenging when dealing with non-specifically or randomly deuterated compounds that are produced by metal catalyzed hydrothermal reactions in D{sub 2}O, one of the most convenient deuteration methods. In this study, deuterium-induced NMR isotope shifts of quaternary {sup 13}C resonances neighboring deuterated sites have been utilized to quantify the degree of isotope labeling of molecular sites in non-specifically deuterated molecules. By probing {sup 13}C NMR signals while decoupling both proton and deuterium nuclei, it is possible to resolve {sup 13}C resonances of the different isotopologues based on the isotopic shifts and the degree of deuteration of the carbon atoms. We demonstrate that in different isotopologues, the same quaternary carbon, neighboring partially deuterated carbon atoms, are affected to an equal extent by relaxation. Decoupling both nuclei ({sup 1}H, {sup 2}H) resolves closely separated quaternary {sup 13}C signals of the different isotopologues, and allows their accurate integration and quantification under short relaxation delays (D1 = 1 s) and hence fast accumulative spectral acquisition. We have performed a number of approaches to quantify the deuterium content at different specific sites to demonstrate a convenient and generic analysis method for use in randomly deuterated molecules, or in cases of specifically deuterated molecules where back-exchange processes may take place during work up. - Graphical abstract: The relative intensities of quaternary {sup 13}C {"1H,"2H} resonances are equal despite the different relaxation delays, allowing the relative abundance of the different deuterated isotopologues to be calculated using NMR fast

  15. Isotope effects on chemical shifts in tautomeric systems with double proton transfer. Citronin

    International Nuclear Information System (INIS)

    Hansen, P.E.; Langgard, M.; Bolvig, S.

    1998-01-01

    Primary and secondary deuterium isotope effects on 1 H and 13 C chemical shifts are measured in citrinin, a tautomeric compound with an unusual doubly intramolecularly hydrogen bonded structure. The isotope effects are to a large extent dominated by equilibrium contributions and deuteration leads to more of the deuterated enol forms rather than the deuterated acid form. 1 H 13 C and 17 O nuclear shieldings are calculated using density functional ab initio methods. A very good correlation between calculated nuclear shieldings and experimental 1 H and 13 C chemical shifts is obtained. The tautomeric equilibrium can be analyzed based on the isotope effects on B-6 and C-8 carbons and shows an increase in the o-quinone form on lowering the temperature. Furthermore, upon deuteration the largest equilibrium shift is found for deuteration at OH-8 and the shift in the tautomeric equilibrium upon deuteration at OH-8 and the shift in the tautomeric equilibrium upon deuteration is increasing at lower temperature. (author)

  16. Hydroxyl accessibility in wood by deuterium exchange and ATR-FTIR spectroscopy

    DEFF Research Database (Denmark)

    Tarmian, Asghar; Burgert, Ingo; Thybring, Emil Engelund

    2017-01-01

    The accessibility of wood hydroxyls to water is commonly studied by infrared spectroscopy after deuteration where water-interacting hydroxyls have their H exchanged for D. In this study, the hydroxyl accessibility is determined with ATR-FTIR spectroscopy after deuteration of specimens with liquid......2O. Several factors are examined to reveal the uncertainties involved in the accessibility determination. Despite the fact that specimens were able to interact with water vapour after deuteration and drying, producing a freshly cut surface just before measurement limited the effect of re...

  17. Neutron powder diffraction study on fully hydrogenated amino acid molecules

    International Nuclear Information System (INIS)

    Jiao Xuesheng; Sun Kai; Han Wenze; Liu Yuntao; Chen Dongfeng

    2010-01-01

    The traditional methods for studying amino acid molecular structure are X-ray diffraction and neutron diffraction after deuteration. In this paper, X-ray diffraction, neutron powder diffraction and Raman scattering were used to study the molecular structure of alanine and leucine. Combination of infrared spectroscopy, compared with fully hydrogenated, partial deuterated and fully deuterated alanine molecules, it is shown that the traditional methods are not enough in the study of molecular structure. Meanwhile, the neutron powder diffraction method was used to measure the leucine molecule directly. It shows that neutron powder diffraction method can give the fine structure of leucine molecule. (authors)

  18. Solvent-induced chemical shifts of methoxyl nuclear resonance signals in chalcones by benzene and trifluoroacetic acid

    Science.gov (United States)

    Khurana, Shashi K.; Krishnamoorthy, V.; Parmar, Virinder S.

    The 1H NMR spectra of eight different methoxylated chalcones have separately been recorded, (1) in deuterated chloroform; (2) in a mixture (1:1) of deuterated chloroform and benzene; and (3) in a mixture of deuterated chloroform, benzene and trifluoroacetic acid (2:2:1) and the benzene induced and TFA induced shift values have been assigned to different methoxyl groups. These shift values can serve as a guide in determining the structures of natural or new chalcones. The steric, electronic and conformational factors are discussed to explain the shift values.

  19. 76 FR 67200 - Prospective Grant of Exclusive License: Electron Paramagnetic Resonance Devices and Systems for...

    Science.gov (United States)

    2011-10-31

    ... the availability of non-toxic water-soluble trityl and deuterated trityl based spin probes which have... published by the United States Patent and Trademark Office or the World Intellectual Property Organization...

  20. Rovibrational spectra of DCF3 in the 2000 cm−1 region: A high-resolution study of the v5 = 2 and v2 = v5 = 1 levels

    Czech Academy of Sciences Publication Activity Database

    Ceausu-Velcescu, A.; Pracna, Petr; Predoi-Cross, A.

    2014-01-01

    Roč. 305, NOV 2014 (2014), s. 1-9 ISSN 0022-2852 Institutional support: RVO:61388955 Keywords : deuterated fluoroform * overtone bands * combination bands Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 1.482, year: 2014

  1. Rovibrational spectra of DCF3 in the 1900 cm(-)1 region: High-resolution study of the v(3) = v(4)=1/v(3)=2, v(6)=1 Fermi-interacting levels

    Czech Academy of Sciences Publication Activity Database

    Ceausu-Velcescu, A.; Pracna, Petr

    2014-01-01

    Roč. 295, JAN 2014 (2014), s. 31-36 ISSN 0022-2852 Institutional support: RVO:61388955 Keywords : deuterated fluoroform * combination bands * Fermi interaction Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 1.482, year: 2014

  2. Spatially resolved protein hydrogen exchange measured by subzero-cooled chip-based nanoelectrospray ionization tandem mass spectrometry

    DEFF Research Database (Denmark)

    Amon, Sabine; Trelle, Morten B; Jensen, Ole N

    2012-01-01

    Mass spectrometry has become a valuable method for studying structural dynamics of proteins in solution by measuring their backbone amide hydrogen/deuterium exchange (HDX) kinetics. In a typical exchange experiment one or more proteins are incubated in deuterated buffer at physiological conditions....... After a given period of deuteration, the exchange reaction is quenched by acidification (pH 2.5) and cooling (0 °C) and the deuterated protein (or a digest thereof) is analyzed by mass spectrometry. The unavoidable loss of deuterium (back-exchange) that occurs under quench conditions is undesired......, only 4% and 6% deuterium loss for fully deuterated ubiquitin and β(2)-microglobulin were observed after 10 min of back-exchange. The practical value of our subzero-cooled setup for top-down fragmentation HDX analyses is demonstrated by electron-transfer dissociation of ubiquitin ions under carefully...

  3. Qualitative gas chromatography-mass spectrometry analyses using amines as chemical ionization reagent gases.

    Science.gov (United States)

    Little, James L; Howard, Adam S

    2013-12-01

    Ammonia is a very useful chemical ionization (CI) reagent gas for the qualitative analyses of compounds by positive ion gas chromatography-mass spectrometry (GCMS). The gas is readily available, inexpensive, and leaves no carbon contamination in the MS source. Compounds of interest to our laboratory typically yield abundant protonated or ammoniated species, which are indicative of a compound's molecular weight. Nevertheless, some labile compounds fragment extensively by substitution and elimination reactions and yield no molecular weight information. In these cases, a CI reagent gas mixture of methylamine in methane prepared dynamically was found to be very useful in obtaining molecular weight data. Likewise, deuterated ammonia and deuterated methylamine are useful CI reagent gases for determining the exchangeable protons in organic compounds. Deuterated methylamine CI reagent gas is conveniently prepared by dynamically mixing small amounts of methylamine with excess deuterated ammonia.

  4. Molecular dynamics and phase transitions in C12H25NH3Cl

    International Nuclear Information System (INIS)

    Jurga, S.; Perly, B.; CEA Centre d'Etudes Nucleaires de Saclay, 91-Gif-sur-Yvette

    1994-01-01

    Results of the study of deuterium resonance in selective deuterized dodecyl ammonium chloride have been presented. The influence of temperature phase transitions on molecule dynamics in liquid and crystalline phase have been discussed

  5. Neutron scattering for the analysis of biological structures. Brookhaven symposia in biology. Number 27

    Energy Technology Data Exchange (ETDEWEB)

    Schoenborn, B P [ed.

    1976-01-01

    Sessions were included on neutron scattering and biological structure analysis, protein crystallography, neutron scattering from oriented systems, solution scattering, preparation of deuterated specimens, inelastic scattering, data analysis, experimental techniques, and instrumentation. Separate entries were made for the individual papers.

  6. Trace Gas Evolution in the Present and Past Atmosphere

    DEFF Research Database (Denmark)

    Winther, Malte Nordmann

    , allowed for determinationof isotopic fractionation values during both production and reduction of N2O, comparableto previous studies.In Part III, I present measurements of ice core samples analyzed for isotopes of N2O. Icesamples from three time periods of the Holocene and one from the glacial were......Nitrous oxide (N2O) is a very important trace greenhouse gas in the atmosphere. With anincreasing atmospheric concentration of 327 ppb at present, and a warming potential 300times that of CO2, the signicance of N2O has been rapidly increasing since the 1950s. It isgenerally known that N2O primarily...... originates from microbial production in terrestrial andaquatic ecosystems. In this thesis I present measurements of the intramolecular distributionof 15N in N2O given as site preference (difference in abundance of the isotopomers), σ15Nbulk(average abundance of the isotopomers), and measurements of σ18O-N2O...

  7. CCSD(T) study of the infrared spectrum of ethyl-methyl-ether isotopic varieties

    International Nuclear Information System (INIS)

    Senent, M.L.; Ruiz, R.; Villa, M.; Dominguez-Gomez, R.

    2010-01-01

    Band positions for the infrared bands of various ethyl-methyl-ether isotopomers (CH 3 CH 2 OCH 2 D, CH 2 DCH 2 OCH 3 , CH 3 CH 2 OCD 3 , CD 3 CH 2 OCH 3 , CH 3 CD 2 OCH 3 , CH 3 CH 2 O 13 CH 3 , 13 CH 3 CH 2 OCH 3 , and CH 3 13 CH 2 OCH 3 ) are determined using second order perturbation theory. For species showing G 18 symmetry, band position are calculated variationally from a CCSD(T)/cc-pVTZ three-dimensional potential energy surface corrected vibrationally. Potential energy barriers, fundamental frequencies, and rotational constants for excited vibrational levels, are also provided. Calculated frequencies for CH 3 CH 2 OCD 3 confirm experimental assignments and our predictions for the most abundant isotopomer .

  8. Small angle scattering from soft matter-application to complex mixed systems

    International Nuclear Information System (INIS)

    Boue, F.; Cousin, F.; Gummel, J.; Carrot, G.; El Harrak, A.; Oberdisse, J.

    2007-01-01

    The advantage of small angle neutron scattering associated with isotopic labelling through deuteration is illustrated in the case of mixed systems, created by associating already well-known systems of characteristic structures; this is also important for applications. Our first mixed system associates charged polymer chains, polyelectrolyte (here polystyrene sulfonate, PSS), with oppositely charged particles, proteins (here lysozyme). Different fractions of deuterated water (D 2 O) mixed with normal water are used to match the scattering length density of the protein or of the polymer in non-deuterated or deuterated version. First, this allows us to separate the protein and the polymer signal: we can then distinguish a case where the structures of each species alone in water are hardly modified by mixing, except for interconnections yielding a gel, and a case inducing complete change into a structure common to both species, made of aggregated globules. Secondly, using, for counter-ions of the poly-ions, deuterated Tetramethylammonium, together with matching both protein and polymer, we establish unambiguously the counter-ion release into the solvent. Thirdly, matching only a fraction of polymer chains, the other being deuterated, we extrapolate at zero deuterated fraction their form factor and describe the chain conformation inside the complexes. Fourthly, we illustrate the possibilities of modelling the signal on a second example of mixed system: a nano-composite made of silica particles surrounded by polymer dispersed into a deuterated polymer matrix. Chains are then visible in such reinforced polymer system, in particular when it is submitted to elongation: we discuss a possible model for an ideal system, introducing the scattering contribution from deformed chains. (authors)

  9. The elution and breakdown behavior of constituents from various light-cured composites.

    Science.gov (United States)

    Sevkusic, Marija; Schuster, Lena; Rothmund, Lena; Dettinger, Katharina; Maier, Moritz; Hickel, Reinhard; Van Landhuyt, Kirsten L; Durner, Jürgen; Högg, Christof; Reichl, Franz-Xaver

    2014-06-01

    Constituents of dental composites can be released from dental fillings after polymerization. The aim of this study was to examine the time-related elution and breakdown of separable constituents of polymerized composites using deuterated solvents. Elution and breakdown of constituents were investigated with deuterated solvents methanol and water by gas chromatography/mass spectrometry of following composites for 180 days: Filtek™ Supreme XT, Filtek™ Supreme XT Flow, Tetric Ceram(®), Tetric Flow(®), Grandio(®), Grandio(®) Flow. Within 180 days no compounds were formed as the products of breakdown. 19 compounds were identified as elution products: Bis-EMA, TEGDMA, DDDMA, EGDMA, MAA, BPA, CQ, HQME, DMABEE, CSA, BL, TEG, BHT, TINP, TPP, TPSB, DEDHTP, DCHP, ß-PHEA. The highest concentration of Bis-EMA was measured for Tetric Flow(®) in deuterated methanol on day 90 at 36.993mmol/l and in deuterated water also on day 90 at 0.031mmol/l. The highest TEGDMA concentrations were measured for Grandio(®) Flow in deuterated methanol on day 60 at 1.322mmol/l and for Filtek™ Supreme XT Flow in deuterated water on day 3 at 0.689mmol/l. The highest BPA concentration was measured for Tetric Flow(®) in deuterated methanol on day 90 at 1.469mmol/l. The highest BPA concentration was measured for Grandio(®) in deuterated water on day 180 at 0.007mmol/l. Significance Examination of time-related elution indicates that various elution products (e.g. Bis-EMA, BPA) were only released in small quantities during the first 90 days, but in high quantities between day 90 and day 180. Copyright © 2014 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

  10. Minute Impurities Contribute Significantly to Olfactory Receptor Ligand Studies: Tales from Testing the Vibration Theory

    OpenAIRE

    Paoli, M.; M?nch, D.; Haase, A.; Skoulakis, E.; Turin, L.; Galizia, C. G.

    2017-01-01

    Several studies have attempted to test the vibrational hypothesis of odorant receptor activation in behavioral and physiological studies using deuterated compounds as odorants. The results have been mixed. Here, we attempted to test how deuterated compounds activate odorant receptors using calcium imaging of the fruit fly antennal lobe. We found specific activation of one area of the antennal lobe corresponding to inputs from a specific receptor. However, upon more detailed analysis, we disco...

  11. Solid Polarized Targets and Applications

    International Nuclear Information System (INIS)

    Crabb, D. G.

    2008-01-01

    Examples are given of dynamically polarized targets in use today and how the subsystems have changed to meet the needs of todays experiments. Particular emphasis is placed on target materials such as ammonia and lithium deuteride. Recent polarization studies of irradiated materials such as butanol, deuterated butanol, polyethylene, and deuterated polyethylene are presented. The operation of two non-DNP target systems as well as applications of traditional DNP targets are briefly discussed

  12. Low-Absorption Liquid Crystals for Infrared Beam Steering

    Science.gov (United States)

    2015-09-30

    tradeoff is that fluoride atom is much heavier than hydrogen atom, and may suppress the liquid crystal phase or increase the melting point...exhibits nematic phase from 7.0oC to 19.10C, which is lower than that of non-deuterated 5CB (22.5~34.20C). From gas chromatography our partially...Deuteration: Substituting hydrogen with deuterium doubles the effective mass. As a result, the molecular vibration frequency would shift toward a

  13. Photoconductivity and bleaching of trapped electrons at 770C in irradiated methylcyclohexane

    International Nuclear Information System (INIS)

    Dolivo, G.; Gaeumann, T.

    1977-01-01

    The influence of the wavelength and intensity of the bleaching radiation on the thermoluminescence, thermoconductivity, optical absorption and photoconductivity of the methylcyclohexane, protonated and deuterated, was studied. The energy level scheme of the trapped electron in this alkane is very similar to that found in MTHF and 3-MP. The rate of bleaching of the trapped electrons is less in the deuterated product. (U.K.)

  14. New method for the study of Amaryllidaceae alkaloid biosynthesis using biotransformation of deuterium-labeled precursor in tissue cultures

    International Nuclear Information System (INIS)

    Tahchy, A. E.; Boisbrun, M.; Chretien, F.; Henry, M.; Chapleur, Y.; Laurain-Mattar, D.; Ptak, A.; Dupire, F.

    2010-01-01

    Biotransformation of deuterated-4'-O-methylnorbelladine into alkaloids galanthamine and lycorine in tissue cultures of Leucojum aestivum was demonstrated using HPLC coupled to mass spectrometry. GC-MS screening was also carried to investigate other native and deuterated alkaloids. A total of six labeled alkaloids were identified indicating that 4'-O-methyl-d3-norbelladine is incorporated into three different groups of Amaryllidaceae alkaloids that are biosynthesized by three modes of intramolecular oxidative phenol coupling. (authors)

  15. Fragment Formula Calculator (FFC): Determination of Chemical Formulas for Fragment Ions in Mass Spectrometric Data

    OpenAIRE

    Wegner, André; Weindl, Daniel; Jäger, Christian; Sapcariu, Sean C.; Dong, Xiangyi; Stephanopoulos, Gregory; Hiller, Karsten

    2014-01-01

    The accurate determination of mass isotopomer distributions (MID) is of great significance for stable isotope-labeling experiments. Most commonly, MIDs are derived from gas chromatography/electron ionization mass spectrometry (GC/EI-MS) measurements. The analysis of fragment ions formed during EI, which contain only specific parts of the original molecule can provide valuable information on the positional distribution of the label. The chemical formula of a fragment ion is usually applied to ...

  16. Anharmonic force field and vibrational frequencies of tetrafluoromethane (CF$_4$) and tetrafluorosilane (SiF$_4$)

    OpenAIRE

    Wang, Xiao-Gang; Sibert III, Edwin L.; Martin, Jan M. L.

    1999-01-01

    Accurate quartic anharmonic force fields for CF$_4$ and SiF$_4$ have been calculated using the CCSD(T) method and basis sets of $spdf$ quality. Based on the {\\it ab initio} force field with a minor empirical adjustment, the vibrational energy levels of these two molecules and their isotopomers are calculated by means of high order Canonical Van Vleck Perturbation Theory(CVPT) based on curvilinear coordinates. The calculated energies agree very well with the experimental data. The full quadrat...

  17. Effect of D2O on growth properties and chemical structure of annual ryegrass (Lolium multiflorum)

    Energy Technology Data Exchange (ETDEWEB)

    Evans, Barbara R [ORNL; Bali, Garima [Georgia Institute of Technology, Atlanta; Reeves, David T [ORNL; O' Neill, Hugh Michael [ORNL; Sun, Qining [Georgia Institute of Technology, Atlanta; Shah, Riddhi S [ORNL; Ragauskas, Arthur [Georgia Institute of Technology, Atlanta

    2014-01-01

    In present paper, we report the production and detailed structural analysis of deuterium-enriched rye grass (Lolium multiflorum) for neutron scattering experiments. An efficient method to produce deuterated biomass was developed by designing hydroponic perfusion chambers. In preliminary studies, the partial deuterated rye samples were grown in increasing levels of D2O to study the seed germination and the level of deuterium incorporation as a function of D2O concentration. Solution NMR method indicated 36.9 % deuterium incorporation in 50 % D2O grown annual rye samples and further significant increase in the deuterium incorporation level was observed by germinating the rye seedlings in H2O and growing in 50 % D2O inside the perfusion chambers. Moreover, in an effort to compare the substrate characteristics related to enzymatic hydrolysis on deuterated and protiated version of biomass, annual rye grown in 50 % D2O was selected for detailed biomass characterization studies. The compositional analyses, degree of polymerization and cellulose crystallinity were compared with its protiated control. The cellulose molecular weight indicated slight variation with deuteration; however, hemicellulose molecular weights and cellulose crystallinity remain unaffected with the deuteration. Besides the minor differences in biomass components, the development of deuterated biomass for neutron scattering application is essential to understand the complex biomass conversion processes.

  18. Hydrogen-deuterium substitution in solid ethanol by surface reactions at low temperatures

    Science.gov (United States)

    Oba, Yasuhiro; Osaka, Kazuya; Chigai, Takeshi; Kouchi, Akira; Watanabe, Naoki

    2016-10-01

    Ethanol (CH3CH2OH) is one of the most abundant complex organic molecules in star-forming regions. Despite its detection in the gas phase only, ethanol is believed to be formed by low-temperature grain-surface reactions. Methanol, the simplest alcohol, has been a target for observational, experimental, and theoretical studies in view of its deuterium enrichment in the interstellar medium; however, the deuterium chemistry of ethanol has not yet been an area of focus. Recently, deuterated dimethyl ether, a structural isomer of ethanol, was found in star-forming regions, indicating that deuterated ethanol can also be present in those environments. In this study, we performed laboratory experiments on the deuterium fractionation of solid ethanol at low temperatures through a reaction with deuterium (D) atoms at 10 K. Hydrogen (H)-D substitution, which increases the deuteration level, was found to occur on the ethyl group but not on the hydroxyl group. In addition, when deuterated ethanol (e.g. CD3CD2OD) solid was exposed to H atoms at 10 K, D-H substitution that reduced the deuteration level occurred on the ethyl group. Based on the results, it is likely that deuterated ethanol is present even under H-atom-dominant conditions in the interstellar medium.

  19. On stabilization of scattering resonances in recombination reaction that forms ozone.

    Science.gov (United States)

    Ivanov, Mikhail V; Babikov, Dmitri

    2016-04-21

    Calculations of energy transfer in the recombination reaction that forms ozone are carried out within the framework of the mixed quantum/classical theory and using the dimensionally reduced 2D-model of ozone molecule, with bending motion neglected. Recombination rate coefficients are obtained at room temperature for symmetric and asymmetric isotopomers of singly and doubly substituted isotopologues. The processes of resonance formation, spontaneous decay, collisional dissociation, and stabilization by bath gas (Ar) are all characterized and taken into account within the steady-state approximation for kinetics. The focus is on stabilization step, where the mysterious isotopic η-effect was thought to originate from. Our results indicate no difference in cross sections for stabilization of scatteringresonances in symmetric and asymmetric isotopomers. As practical results, the general and simple analytic models for stabilization and dissociation cross sections are presented, which can be applied to resonances in any ozone molecule, symmetric or asymmetric, singly or doubly substituted. Present calculations show some isotope effect that looks similar to the experimentally observed η-effect, and the origin of this phenomenon is in the rates of formation/decay of scatteringresonances, determined by their widths, that are somewhat larger in asymmetric isotopomers than in their symmetric analogues. However, the approximate two-dimensional model used here is insufficient for consistent and reliable description of all features of the isotopic effect in ozone. Calculations using an accurate 3D model are still needed.

  20. On stabilization of scattering resonances in recombination reaction that forms ozone

    Science.gov (United States)

    Ivanov, Mikhail V.; Babikov, Dmitri

    2016-04-01

    Calculations of energy transfer in the recombination reaction that forms ozone are carried out within the framework of the mixed quantum/classical theory and using the dimensionally reduced 2D-model of ozone molecule, with bending motion neglected. Recombination rate coefficients are obtained at room temperature for symmetric and asymmetric isotopomers of singly and doubly substituted isotopologues. The processes of resonance formation, spontaneous decay, collisional dissociation, and stabilization by bath gas (Ar) are all characterized and taken into account within the steady-state approximation for kinetics. The focus is on stabilization step, where the mysterious isotopic η-effect was thought to originate from. Our results indicate no difference in cross sections for stabilization of scattering resonances in symmetric and asymmetric isotopomers. As practical results, the general and simple analytic models for stabilization and dissociation cross sections are presented, which can be applied to resonances in any ozone molecule, symmetric or asymmetric, singly or doubly substituted. Present calculations show some isotope effect that looks similar to the experimentally observed η-effect, and the origin of this phenomenon is in the rates of formation/decay of scattering resonances, determined by their widths, that are somewhat larger in asymmetric isotopomers than in their symmetric analogues. However, the approximate two-dimensional model used here is insufficient for consistent and reliable description of all features of the isotopic effect in ozone. Calculations using an accurate 3D model are still needed.

  1. Retrobiosynthetic NMR studies with 13C-labeled glucose. Formation of gallic acid in plants and fungi

    International Nuclear Information System (INIS)

    Werner, I.; Bacher, A.; Eisenreich, W.

    1997-01-01

    The biosynthesis of gallic acid was studied in cultures of the fungus Phycomyces blakesleeanus and in leaves of the tree Rhus typhina. Fungal cultures were grown with [1-13C]glucose or with a mixture of unlabeled glucose and [U-13C6]glucose. Young leaves of R. typhina were kept in an incubation chamber and were supplied with a solution containing a mixture of unlabeled glucose and [U-13C6]glucose via the leaf stem. Isotope distributions in isolated gallic acid and aromatic amino acids were analyzed by one-dimensional 1H and 13C NMR spectroscopy. A quantitative analysis of the complex isotopomer composition of metabolites was obtained by deconvolution of the 13C13C coupling multiplets using numerical simulation methods. This approach required the accurate analysis of heavy isotope chemical shift effects in a variety of different isotopomers and the analysis of long range 13C13C coupling constants. The resulting isotopomer patterns were interpreted using a retrobiosynthetic approach based on a comparison between the isotopomer patterns of gallic acid and tyrosine. The data show that both in the fungus and in the plant all carbon atoms of gallic acid are biosynthetically equivalent to carbon atoms of shikimate. Notably, the carboxylic group of gallic acid is derived from the carboxylic group of an early intermediate of the shikimate pathway and not from the side chain of phenylalanine or tyrosine. It follows that the committed precursor of gallic acid is an intermediate of the shikimate pathway prior to prephenate or arogenate, most probably 5-dehydroshikimate. A formation of gallic acid via phenylalanine, the lignin precursor, caffeic acid, or 3,4, 5-trihydroxycinnamic acid can be ruled out as major pathways in the fungus and in young leaves of R. typhina. The incorporation of uniformly 13C-labeled glucose followed by quantitative NMR analysis of isotopomer patterns is suggested as a general method for biosynthetic studies. As shown by the plant experiment, this

  2. Characteristics of micro transfer paths and diffusion phenomena in the matrix of deep crystalline rock

    International Nuclear Information System (INIS)

    Ishibashi, Masayuki; Sasao, Eiji; Hama, Katsuhiro

    2016-01-01

    Matrix diffusion is one of the important phenomena for evaluating the safety of the geological disposal of high level waste because it has an effect of retarding mass transport in crystalline rocks. Previous studies indicated that the altered granitic rocks have high retardation functions due to the micropore formation associated with hydrothermal alteration; however, there has not been enough knowledge on the matrix diffusion in weakly unaltered rocks (macroscopically unaltered rocks). Since the macroscopically altered granitic rocks in Japan are likely to be affected by deuteric alteration due to hydrothermal flu resulting from crystallization of granitic magma, it is important to understand the effect of deuteric alteration on the matrix diffusion. Therefore, detailed observations were carried out to clarify the effects of deuteric alteration focused on the macroscopically unaltered granite sampled from 300 m and 500 m below ground levels at the Mizunami Underground Research Laboratory, central Japan. The results provide that the micropores are selectively formed in plagioclases due to deuteric alteration and they have the potential of acting as matrix diffusion paths. This is indicating the possibility that deuteric alteration can retard the mass transport in crystalline rocks in Japan. That plays a significant role in enforcing the barrier function of crystalline rocks. (author)

  3. H{sub 2} Ortho-to-para Conversion on Grains: A Route to Fast Deuterium Fractionation in Dense Cloud Cores?

    Energy Technology Data Exchange (ETDEWEB)

    Bovino, S. [Hamburger Sternwarte, Universität Hamburg, Gojenbergsweg 112, D-21029 Hamburg (Germany); Grassi, T. [Centre for Star and Planet Formation, Niels Bohr Institute and Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen (Denmark); Schleicher, D. R. G. [Departamento de Astronomía, Facultad Ciencias Físicas y Matemáticas, Universidad de Concepción, Av. Esteban Iturra s/n Barrio Universitario, Casilla 160, Concepción (Chile); Caselli, P., E-mail: stefano.bovino@uni-hamburg.de [Max-Planck-Institut für extraterrestrische Physik, Giessenbachstrasse 1, D-85748 Garching (Germany)

    2017-11-10

    Deuterium fractionation, i.e., the enhancement of deuterated species with respect to non-deuterated ones, is considered to be a reliable chemical clock of star-forming regions. This process is strongly affected by the ortho-to-para H{sub 2} ratio. In this Letter we explore the effect of the ortho–para (o–p) H{sub 2} conversion on grains on the deuteration timescale in fully-depleted dense cores, including the most relevant uncertainties that affect this complex process. We show that (i) the o–p H{sub 2} conversion on grains is not strongly influenced by the uncertainties on the conversion time and the sticking coefficient, and (ii) that the process is controlled by the temperature and the residence time of ortho-H{sub 2} on the surface, i.e., by the binding energy. We find that for binding energies between 330 and 550 K, depending on the temperature, the o–p H{sub 2} conversion on grains can shorten the deuterium fractionation timescale by orders of magnitude, opening a new route for explaining the large observed deuteration fraction D {sub frac} in dense molecular cloud cores. Our results suggest that the star formation timescale, when estimated through the timescale to reach the observed deuteration fractions, might be shorter than previously proposed. However, more accurate measurements of the binding energy are needed in order to better assess the overall role of this process.

  4. Deuterium-Labeling Study of the Hydrogenation of 2-Methylfuran and 2,5-Dimethylfuran over Carbon-Supported Noble Metal Catalysts.

    Science.gov (United States)

    Kang, Jungshik; Vonderheide, Anne; Guliants, Vadim V

    2015-09-21

    2-Methylfuran and 2,5-dimethylfuran were deuterated over Pd and Pt catalysts at 90-220 °C. Furan ring saturation over a Pd/C catalyst occurred at low reaction temperatures, which led to deuterated THFs, followed by progressive D exchange in the THF ring at higher temperatures. Finally, H/D exchange occurred in the methyl groups on the THF ring. Cleavage of the C-O bond also occurred over a Pd/C catalyst at elevated temperatures, which resulted in deuterated ketones, for which all H atoms were exchanged for D. Alcohols were produced over a Pt/C catalyst at low temperatures because they are more stable than the corresponding ketones. D replaced H on all carbon atoms of the furan ring and saturated the O and C atoms of the broken C-O bond in both deuterated 2-pentanol and 2-hexanol. At low temperatures (90-105 °C), all H atoms in the deuterated alcohols were exchanged for D except for the last two hydrogen atoms on the methyl groups. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Spatially resolved protein hydrogen exchange measured by matrix-assisted laser desorption ionization in-source decay

    DEFF Research Database (Denmark)

    Rand, Kasper D; Bache, Nicolai; Nedertoft, Morten M

    2011-01-01

    Mass spectrometry has become a powerful tool for measuring protein hydrogen exchange and thereby reveal the structural dynamics of proteins in solution. Here we describe the successful application of a matrix-assisted laser desorption ionization (MALDI) mass spectrometry approach based on in......-source decay (ISD) to measure spatially resolved amide backbone hydrogen exchange. By irradiating deuterated protein molecules in a crystalline matrix with a high laser fluence, they undergo prompt fragmentation. Spatially resolved deuteration levels are readily obtained by mass analysis of consecutive...... fragment ions. MALDI ISD analysis of deuterated cytochrome c yielded an extensive series of c-fragment ions which originate from cleavage of nearly all N-C(α) bonds (Cys17 to Glu104) allowing for a detailed analysis of the deuterium content of the backbone amides. While hydrogen scrambling can be major...

  6. Development of a stealth carrier system for structural studies of membrane proteins in solution

    DEFF Research Database (Denmark)

    Maric, Selma

    Structural studies of membrane proteins remain a great experimental challenge. Functional reconstitution into artificial carriers that mimic the native bilayer environment allows for the handling of membrane proteins in solution and enables the use of small-angle scattering techniques for fast...... which can be used for SANS structural analysis of membrane proteins in solution. In combination with the D2O/H2O-based contrast variation method it is demonstrated that it is possible to prepare specifically deuterated analogues of the nanodisc, which give minimal contribution to the neutron scattering...... data when used in 100% D2O. An important challenge in the project was obtaining selective partial deuteration of the nanodisc system necessary for the total matching at 100% D2O. This was achieved through an E. coli based biosynthesis for both deuterated phosphatidylcholines as well as membrane...

  7. Investigation on cold fusion phenomena using gas-metal loading experiments

    International Nuclear Information System (INIS)

    Lanza, F.; Bertolini, G.; Vocino, V.; Parnisari, E.; Ronsecco, C.

    1992-01-01

    Previous experiments have shown that tritium is produced in deuterated titanium. The data obtained are highly scattered and non reproducible. In order to try to define better the phenomenon a series of tests have been performed using various metals and alloys and different deuterating conditions. Sheets and shavings of titanium, zirconium, hafnium, tantalum, zircaloy 2 and Ti-Zr 5O% alloy have been tested. The tritium production is obtained as a difference of the tritium content in the deuterated metal and the initial content of tritium in the deuterium gas. The amount of tritium produced is low and reproducibility is rather poor. A statistical analysis shows that significant differences are obtained varying the type of metal used. In general the tritium production increases with the atomic number of the metal. Moreover significantly higher productions of tritium have been obtained using materials of technical purity as tantalum, zircaloy 2 and Ti-Zr alloy

  8. The performance studies of DKDP crystals grown by a rapid horizontal growth method

    Science.gov (United States)

    Xie, Xiaoyi; Qi, Hongji; Wang, Bin; Wang, Hu; Chen, Duanyang; Shao, Jianda

    2018-04-01

    A deuterated potassium dihydrogen phosphate (DKDP) crystal with about 70% deuterium level was grown by a rapid horizontal growth method with independent design equipment, which includes a continuous filtration system. The cooling program during crystal growth was designed according to a self-developed software to catch the size of growing crystal in real time. The crystal structure, optical performance and laser induced damage threshold (LIDT) of this DKDP crystal were investigated in this paper. The deuterium concentration of the crystal was confirmed by the neutron diffraction technique, which was effective and available in determining a complete range of deuteration level. The dielectric property was measured to evaluate the perfection of the lattice. The transmittance and LIDT were carried out further to evaluate the optical and functional properties of this DKDP crystal grown in the rapid horizontal growth technique. All of the detailed characterization for DKDP figured out that the 70% deuterated KDP crystal grown in this way had relatively good qualities.

  9. INTERSTELLAR DETECTION OF c-C{sub 3}D{sub 2}

    Energy Technology Data Exchange (ETDEWEB)

    Spezzano, S.; Bruenken, S.; Schilke, P.; Schlemmer, S. [I. Physikalisches Institut, Universitaet zu Koeln, Zuelpicher Str. 77, D-50937 Koeln (Germany); Caselli, P. [School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT (United Kingdom); Menten, K. M. [Max-Planck-Institut fuer Radioastronomie, Auf dem Huegel 69, D-53121 Bonn (Germany); McCarthy, M. C. [Harvard-Smithsonian Center for Astrophysics, 60 Garden St., Cambridge, MA 02138 (United States); Bizzocchi, L. [Centro de Astronomia e Astrofisica, Observatorio Astronomico de Lisboa, Tapada da Ajuda, 1349-018 Lisboa (Portugal); Trevino-Morales, S. P. [IRAM, E-18012 Granada (Spain); Aikawa, Y. [Department of Earth and Planetary Sciences, Kobe University, Kobe 657-8501 (Japan)

    2013-06-01

    We report the first interstellar detection of c-C{sub 3}D{sub 2}. Doubly deuterated cyclopropenylidene, a carbene, has been detected toward the starless cores TMC-1C and L1544 using the IRAM 30 m telescope. The J{sub K{sub a,K{sub c}}} = 3{sub 0,3}-2{sub 1,2}, 3{sub 1,3}-2{sub 0,2}, and 2{sub 2,1}-1{sub 1,0} transitions of this species have been observed at 3 mm in both sources. The expected 1:2 intensity ratio has been found in the 3{sub 0,3}-2{sub 1,2} and 3{sub 1,3}-2{sub 0,2} lines, belonging to the para and ortho species, respectively. We also observed lines of the main species, c-C{sub 3}H{sub 2}, singly deuterated c-C{sub 3}HD, and the species with one {sup 13}C off of the principal axis of the molecule, c-H{sup 13}CC{sub 2}H. The lines of c-C{sub 3}D{sub 2} have been observed with high signal-to-noise ratio, better than 7.5{sigma} in TMC-1C and 9{sigma} in L1544. The abundance of doubly deuterated cyclopropenylidene with respect to the normal species is found to be 0.4%-0.8% in TMC-1C and 1.2%-2.1% in L1544. The deuteration of this small hydrocarbon ring is analyzed with a comprehensive gas-grain model, the first including doubly deuterated species. The observed abundances of c-C{sub 3}D{sub 2} can be explained solely by gas-phase processes, supporting the idea that c-C{sub 3}H{sub 2} is a good indicator of gas-phase deuteration.

  10. Neutron Scattering of Residual Hydrogen in 1,4-Dioxane-D8 Liquid. Understanding Measurements with Molecular Dynamics Simulations

    Energy Technology Data Exchange (ETDEWEB)

    de Almeida, Valmor F. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Liu, Hongjun [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Herwig, Kenneth W. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Kidder, Michelle [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2016-01-25

    That incoherent scattering from protiated molecular liquids adds a constant background to the measured scattering intensity is well known, but less appreciated is the fact that coherent scattering is also induced by the presence of hydrogen in a deuterated liquid. In fact, the scattering intensity can be very sensitive, in the small-q region, with respect to the amounts and distribution of residual H in the system. We used 1,4-dioxane liquid to demonstrate that the partial structure factors of the HD and DD atom pairs contribute significantly to inter-molecular scattering and that uncertainty in the extent of deuteration account for discrepancies between simulations and measurements. Both contributions to uncertainty have similar magnitudes: scattering interference of the hydrogen-deuterium pair, and complementary interference from the deuterium-deuterium pair by virtue of chemical inhomogeneity. This situation arises in practice since deuteration of liquids is often 99% or less. A combined experimental and extensive computational study of static thermal neutron scattering of 1,4-dioxane demonstrates the foregoing. We show, through simulations, that the reason for the differences is the content of protiated dioxane (vendors quote 1%). We estimate that up to 5% (at 298K and at 343K) protiated mole fraction may be involved in generating the scattering differences. Finally, we find that the particular distribution of hydrogen in the protiated molecules affects the results significantly; here we considered molecules to be either fully protiated or fully deuterated. This scenario best reconciles the computational and experimental results, and leads us to speculate that the deuteration synthesis process tends to leave a molecule either fully deuterated or fully protiated. Although we have used 1,4-dioxane as a model liquid, the effects described in this study extend to similar liquids and similar systematic experimental/computational studies can be performed to either

  11. Application of solid-state tritium NMR in determining the bioactive conformation of paclitaxel

    International Nuclear Information System (INIS)

    Lin, T.

    2012-01-01

    The determination of the conformation of small molecule bound to its biological target would facilitate people to design improved drugs. This determination can be difficult due to technical limitations, as exemplified by the long standing debate on the microtubule-binding conformation of a natural anticancer drug - paclitaxel. Previous studies using X-ray crystallography and solution-state NMR failed to furnish direct information on the expected conformation. Solid-state NMR may help in this task by providing precise interatomic distances, and the selective labeling on different sites with tritium atoms enables accurate measurement of long-range distances (up to 14.4 Angstroms) owing to the high gyromagnetic ratio of this nucleus, without any structural modification of the molecule. So our project aiming at illustrating the bioactive conformation of paclitaxel consists the syntheses of 6 different paclitaxel isotopomers bearing a pair of tritium at specified positions, flowing by the preparations of corresponding microtubule-labeled paclitaxel complexes. The solid-state tritium NMR analyses of these complexes would provide key distances for determining the expected conformation. Up to now, 2 paclitaxel isotopomers have been prepared from labelling the di-brominated paclitaxel precursor and from coupling the tritiated taxane rings and the tritiated side chains, respectively. The synthetic strategy allowed us to realize the syntheses in generally high yield and good stereoselectivity. Different tritiation methods have been used, from which an isotopic enrichment of higher than 92% was obtained. The syntheses of other 4 isotopomers, together with the microtubule complexes are currently underway in our lab. (author) [fr

  12. Wave-packet dynamics in alkaline dimers. Investigation and control through coherent excitation with fs-pulses

    International Nuclear Information System (INIS)

    Sauer, F.N.B.

    2007-01-01

    During my PhD thesis I investigated alkaline dimers with coherent control in a molecular beam as well as with pump-probe spectroscopy in a magneto-optical trap (MOT). The aim of the coherent control experiments were the isotope selective ionization with phase- and amplitude-shaped fs-pulses. Chapter 4 described the gained results of isotope selective ionization of NaK and KRb in a molecular beam by using different pulse formers. For the NaK dimer was the reached optimization factor R Ph and Ampl 770 =R max /R min =25 between maximization and minimization of the isotopomer ratio ( 23 Na 39 K) + /( 23 Na 41 K) + with phase and amplitude modulation of the fs-pulse with a central wavelength of λ=770 nm. From the electronic ground-state X(1) 1 Σ + ;ν''=0 transfers a one-photon-excitation population in the first excited A(2) 1 Σ + state. The coherent control experiment on KRb was used to maximize and minimize the isotopomer ratio ( 124 KRb) + /( 126 KRb) + . It was the first coherent control experiment with a spectral resolution of 1.84 cm -1 /Pixel. For the phase and amplitude optimization was the received optimization factor between minimization and maximization of the isotopomer ratio R Ph and Ampl =R max /R min =7 at a central wavelength of 840 nm. The results showed a stepwise excitation process from the electronic ground-state in the first excited (2) 1 Σ + state with a further excitation, that is possible over three resonant energy potential curves into the ionic ground-state. In the second part of my thesis I realized pump-probe spectroscopy of Rb 2 dimers in a dark SPOT. (orig.)

  13. Molecular dynamics simulation based on the multi-component molecular orbital method: Application to H5O2+,D5O2+,andT5O2+

    International Nuclear Information System (INIS)

    Ishimoto, Takayoshi; Koyama, Michihisa

    2012-01-01

    Graphical abstract: Molecular dynamics method based on multi-component molecular orbital method was applied to basic hydrogen bonding systems, H 5 O 2 + , and its isotopomers (D 5 O 2 + andT 5 O 2 + ). Highlights: ► Molecular dynamics method with nuclear quantum effect was developed. ► Multi-component molecular orbital method was used as ab initio MO calculation. ► Developed method applied to basic hydrogen bonding system, H 5 O 2 + , and isotopomers. ► O ⋯ O vibrational stretching reflected to the distribution of protonic wavefunctions. ► H/D/T isotope effect was also analyzed. - Abstract: We propose a molecular dynamics (MD) method based on the multi-component molecular orbital (MC M O) method, which takes into account the quantum effect of proton directly, for the detailed analyses of proton transfer in hydrogen bonding system. The MC M O based MD (MC M O-MD) method is applied to the basic structures, H 5 O 2 + (called “Zundel ion”), and its isotopomers (D 5 O 2 + andT 5 O 2 + ). We clearly demonstrate the geometrical difference of hydrogen bonded O ⋯ O distance induced by H/D/T isotope effect because the O ⋯ O in H-compound was longer than that in D- or T-compound. We also find the strong relation between stretching vibration of O ⋯ O and the distribution of hydrogen bonded protonic wavefunction because the protonic wavefunction tends to delocalize when the O ⋯ O distance becomes short during the dynamics. Our proposed MC M O-MD simulation is expected as a powerful tool to analyze the proton dynamics in hydrogen bonding systems.

  14. Heavy water tracing of soil-water transfers under irrigation

    International Nuclear Information System (INIS)

    Moutonnet, P.; Couchat, P.

    1982-01-01

    In soil columns, a horizon was labeled with heavy (deuterated) water (D 2 O), and the evolution of D 2 O during the experiment was monitored in situ by gamma-neutron counting. An automatic irrigation device was used for crop watering. Based on the results of two consecutive experiments (H 2 O and D 2 O balance and water transfer analysis), the system was found to provide fully satisfactory irrigation. Deuterated water labeling, moreover, proved to be an effective technique for evaluating root uptake in a soil horizon

  15. Target Monitoring and Plasma Diagnosis using 2ω probe beam for CANDY

    Science.gov (United States)

    Ishii, Katsuhiro; Mori, Yoshitaka; Hanayama, Ryohei; Nakayama, Suisei; Okihara, Shinichiro; Fujita, Kazuhisa; Sekina, Takashi; Sato, Nakahiro; Kurita, Takashi; Kawashima, Toshiyuki; Kan, Hirofumi; Komeda, Osamu; Nakamura, Naoki; Kondo, Takuya; Fujine, Manabu; Azuma, Hirozumi; Hioki, Tatsumi; Kakeno, Mitsutaka; Motohiro, Tomoyoshi; Nishimura, Yasuhiko; Sunahara, Atsushi; Sentoku, Yasuhiko; Miura, Eisuke; Kitagawa, Yoneyoshi

    2016-03-01

    We have developed the shadowgraph and interferometer with second-harmonic of heating pulses laser to observe target and plasma in highly-repetitive fusion reaction experiments. In the deuterated polystyrene ((C8D8)n double foil experiment, we confirm implosion plasma and plasma collision. In target injection experiment at a 1 Hz rate, we measure the position of the flying deuterated polystyrene beads at the moment of laser pulse illumination and observe the plasma generation by counter-illumination by 0.63 J, 800 nm, and 104 fs laser pulses.

  16. Target Monitoring and Plasma Diagnosis using 2ω probe beam for CANDY

    International Nuclear Information System (INIS)

    Ishii, Katsuhiro; Mori, Yoshitaka; Hanayama, Ryohei; Nakayama, Suisei; Okihara, Shinichiro; Fujita, Kazuhisa; Nishimura, Yasuhiko; Sekina, Takashi; Sato, Nakahiro; Kurita, Takashi; Kawashima, Toshiyuki; Kan, Hirofumi; Komeda, Osamu; Nakamura, Naoki; Kondo, Takuya; Fujine, Manabu; Azuma, Hirozumi; Hioki, Tatsumi; Kakeno, Mitsutaka; Motohiro, Tomoyoshi

    2016-01-01

    We have developed the shadowgraph and interferometer with second-harmonic of heating pulses laser to observe target and plasma in highly-repetitive fusion reaction experiments. In the deuterated polystyrene ((C 8 D 8 )n double foil experiment, we confirm implosion plasma and plasma collision. In target injection experiment at a 1 Hz rate, we measure the position of the flying deuterated polystyrene beads at the moment of laser pulse illumination and observe the plasma generation by counter-illumination by 0.63 J, 800 nm, and 104 fs laser pulses. (paper)

  17. Deuteron NMR (Nuclear Magnetic Resonance) in relation to the glass transition in polymers

    Science.gov (United States)

    Roessler, E.; Sillescu, H.; Spiess, H. W.; Wallwitz, R.

    1983-01-01

    H-2NMR is introduced as a tool for investigating slow molecular motion in the glass transition region of amorphous polymers. In particular, we compare H-2 spin alignment echo spectra of chain deuterated polystyrene with model calculations for restricted rotational Brownian motion. Molecular motion in the polyztyrene-toluene system has been investigated by analyzing H-2NMR of partially deuterated polystyrene and toluene, respectively. The diluent mobility in the mixed glass has been decomposed into solid and liquid components where the respective average correlation times differ by more than 5 decades.

  18. Mass spectrometric identification and quantification of 5-methoxytryptophol in quail retina

    International Nuclear Information System (INIS)

    Tsang, C.W.; Chan, S.F.; Lee, P.P.; Pang, S.F.

    1989-01-01

    The occurrence of 5-methoxytryptophol (5-MTL) in the quail retina was investigated by capillary column gas chromatography/mass spectrometry/selected ion monitoring using a deuterated internal standard. Based on ion intensity ratios in the mass spectra of pentafluoropropionyl and heptafluorobutyryl derivatives of 5-MTL and deuterated 5-MTL, 5-MTL was unequivocally identified in the quail retina. Similar to the circadian rhythm of retinal melatonin, retinal 5-MTL also exhibited a diurnal variation with high levels at mid-dark. However, no significant correlation between the diurnal levels of 5-MTL and melatonin was observed in the quail retina at mid-light or mid-dark

  19. Small angle neutron scattering study of the micelle structure of amphiphilic block copolymers

    International Nuclear Information System (INIS)

    Yamaoka, H.; Matsuoka, H.; Sumaru, K.; Hanada, S.

    1994-01-01

    The amphiphilic block copolymers of vinyl ether were prepared by living cationic polymerization. The partially deuterated copolymers for SANS experiments were especially synthesized by introducing deuterated phenyl units in the hydrophobic chain. SANS measurements were performed for aqueous solutions of these copolymers by changing H 2 O/D 2 O ratios. The SANS profiles indicate that the micelles in the present system exhibit a core-shell structure and that the size and shape of micelles are largely dependent on the length of hydrophobic chain. The micelle of shorter hydrophobic chain was found to be nearly spherical, whereas the micelle of longer hydrophobic chain was confirmed to have an ellipsoidal shape

  20. Process for the production of high purity deuterium

    International Nuclear Information System (INIS)

    Arrathoon, R.

    1977-01-01

    A process for the electrolysis of heavy water which results in the production of high purity deuterium without periodic replenishment of the electrolyte with additional deuterated compounds is defined. Electrolysis is effected through the use of an inexpensive cation-action permselective membrane which is essentially a solid polymer electrolyte and which is capable of automatically separating the evolved deuterium and oxygen gas. This cation-active permselective membrane does not introduce any intrinsic impurities or tritium contamination in the generated deuterium gas, does not require periodic revitalization with deuterated compounds or other chemical compounds, and is characterized by an unusually high electrical efficiency

  1. Characterization of peroxide-based explosives using Raman spectroscopy: isotopic analysis and DFT calculations of triacetone triperoxide (TATP)

    Science.gov (United States)

    Brauer, Carolyn S.; Barber, Jeffrey; Weatherall, James C.; Smith, Barry T.; Tomlinson-Phillips, Jill; Wooten, Alfred

    2011-06-01

    The Raman spectra of triacetone triperoxide (TATP) and its fully deuterated isotopologue (d18-TATP) have been measured. Density functional theory calculations were performed using the EDF2/6-311++G** and B3LYP/6-311++G** methods/basis set to predict the Raman spectra of both the parent and deuterated isotopologues. The predicted isotopic shifts were used to identify frequency shifts in the experimental results and tentative assignments have been made for 10 fundamental vibrational modes of d18-TATP.

  2. Neutron reflectivity of supported membranes incorporating terminally anchored polymers: Protrusions vs. blisters

    DEFF Research Database (Denmark)

    Fragneto, Giovanna; Halperin, Avraham; Klösgen-Buchkremer, Beate Maria

    2013-01-01

    The effect of terminally anchored chains on the structure of lipid bilayers adsorbed at the solid/water interface was characterized by neutron reflectivity. In the studied system, the inner leaflet, closer to the substrate, consisted of head-deuterated 1,2-distearoyl-sn-glycero-3-phosphorylcholine...... (DSPC) and the outer leaflet comprised a mixture of DSPC and polyethylene glycol (PEG) functionalized 1,2-distearoyl-sn-glycero-3-phosphoethanolamine. The DSPC headgroups were deuterated to enhance sensitivity and demarcate the bilayer/water interface. The effect on the inner and outer headgroup layers...

  3. Deuterium incorporation into Escherichia-coli proteins

    DEFF Research Database (Denmark)

    Lederer, H.; May, R. P.; Kjems, Jørgen

    1986-01-01

    Neutron small-angle scattering studies of single protein subunits in a protein-DNA complex require the adjustment of the neutron scattering-length densities of protein and DNA, which is attainable by specific deuteration of the protein. The neutron scattering densities of unlabelled DNA and DNA...... of the degree of deuteration and match point of any E. coli protein from the D2O content of the growth medium, taking the 2H incorporation into RNA polymerase amino acids to be representative for all amino acids in E. coli proteins. The small-angle scattering results, on which the calculation of the degree...

  4. Stress and neutron scattering measurements on linear polymer melts undergoing steady elongational flow

    DEFF Research Database (Denmark)

    Hassager, Ole; Mortensen, Kell; Bach, Anders

    2012-01-01

    We use small-angle neutron scattering to measure the molecular stretching in polystyrene melts undergoing steady elongational flow at large stretch rates. The radius of gyration of the central segment of a partly deuterated polystyrene molecule is, in the stretching direction, increasing with the......We use small-angle neutron scattering to measure the molecular stretching in polystyrene melts undergoing steady elongational flow at large stretch rates. The radius of gyration of the central segment of a partly deuterated polystyrene molecule is, in the stretching direction, increasing...

  5. Morphological consequences of catalytic hydrogenation of polymers in the bulk

    Energy Technology Data Exchange (ETDEWEB)

    Gilliom, L.R.; Schaefer, D.W.; Mark, J.E.

    1989-01-01

    When suitable catalysts are molecularly dispersed in polymers, the polymers can be modified without added solvent. This paper describes studies on the morphology of samples of trans-1,4-polybutadiene and syn-1,2-polybutadiene which have been partially deuterated in the bulk. The development of a peak in the SANS data for the 1,2-polybutadiene suggests the formation of small domains upon deuteration. Possible explanations for this observation, including chemical and physical heterogeneity, are evaluated. Results of SAXS and thermal measurements are also considered. 11 refs., 3 figs., 1 tab.

  6. Rotational study of cis- and trans-acrylic acid-trifluoroacetic acid.

    Science.gov (United States)

    Gou, Qian; Feng, Gang; Evangelisti, Luca; Caminati, Walther

    2013-12-19

    The rotational spectra of the normal and deuterated species of the acrylic acid-trifluoroacetic acid complex have been assigned for both cis and trans conformations with the pulsed jet Fourier transform microwave technique. Relative intensity measurements suggest that the cis species is more stable than the trans one, in agreement with the ab initio results. The deuteration of the carboxylic groups generates an increase of the distance between the two moieties of the complex (Ubbelohde effect) and prevents the possibility of locating the OH hydrogen atoms. The changes of the Paa planar moment of inertia upon OH → OD substitution allowed for a quantitative estimate of the Ubbelohde effect.

  7. The Fourier Transform Microwave (ftmw) Spectra of Cyclohexene Oxide and its Argon Complex

    Science.gov (United States)

    Frohman, Daniel J.; Novick, Stewart E.; Pringle, Wallace C.

    2012-06-01

    The microwave spectrum of cyclohexene oxide and its isotopologues have been observed and assigned, improving upon previous rotational studies of this molecule. Additionally, the 17O isotopomer of cyclohexene oxide and the Ar complex of the normal isotopologue of cyclohexene oxide have been fit for the first time. Fits for the 13C-cyclohexene oxide Ar complexes will also be presented. Tatsuya Ikeda, Roger Kewley, and R. F. Curl, Jr. J. Mol. Spectrosc., 4} (1972), 459-469. Raquel Sánchez, Susana Blanco, Juan C. López, and José L. Alonso. J. Mol. Struct., 780-781 (2006), 57-64.

  8. Interrelations between C4 Ketogenesis, C5 Ketogenesis, and Anaplerosis in the Perfused Rat Liver*

    OpenAIRE

    Deng, Shuang; Zhang, Guo-Fang; Kasumov, Takhar; Roe, Charles R.; Brunengraber, Henri

    2009-01-01

    We investigated the interrelations between C4 ketogenesis (production of β-hydroxybutyrate + acetoacetate), C5 ketogenesis (production of β-hydroxypentanoate + β-ketopentanoate), and anaplerosis in isolated rat livers perfused with 13C-labeled octanoate, heptanoate, or propionate. Mass isotopomer analysis of C4 and C5 ketone bodies and of related acyl-CoA esters reveal that C4 and C5 ketogenesis share the same pool of acetyl-CoA. Although the uptake of octanoate and heptanoate by the liver ar...

  9. Vibrational dynamics of crystalline L-alanine

    Energy Technology Data Exchange (ETDEWEB)

    Bordallo, H.N.; Eckert, J. [Los Alamos National Lab., NM (United States); Barthes, M. [Univ. Montpellier II (France)

    1997-11-01

    The authors report a new, complete vibrational analysis of L-alanine and L-alanine-d{sub 4} which utilizes IINS intensities in addition to frequency information. The use of both isotopomers resulted in a self-consistent force field for and assignment of the molecular vibrations in L-alanine. Some details of the calculation as well as a comparison of calculated and observed IINS spectra are presented. The study clarifies a number of important issues on the vibrational dynamics of this molecule and presents a self-consistent force field for the molecular vibrations in crystalline L-alanine.

  10. Neutron-induced reaction cross-section measurements using a ...

    Indian Academy of Sciences (India)

    2.5 Energy calibration. For energy calibration, the protons and deuterons recoiling respectively from a 1 mm thick polypropylene and a 0.6 mm thick deuterated polypropylene target are used. They are recorded at laboratory angles from 20 to 70° in steps of 10° for each of the six telescopes. Pramana – J. Phys., Vol. 57, No.

  11. Molecular conformation and liquid structure of 2-propanol through ...

    Indian Academy of Sciences (India)

    The neutron diffraction data analysis of deuterated liquid 2-propanol at room temperature to define its ... is still open in view of differences in diffraction, simulation and other results [1,2,6–. 9]. The neutron diffraction is ... molecular conformation hitherto obtained from X-ray diffraction data [10] has lim- itation since hydrogen ...

  12. The Structural Phase Transition in Solid DCN

    DEFF Research Database (Denmark)

    Dietrich, O. W.; Mackenzie, Gordon A.; Pawley, G. S.

    1975-01-01

    Neutron scattering measurements on deuterated hydrogen cyanide have shown that the structural phase change from a tetragonal to an orthorhombic form at 160K is a first-order transition. A transverse acoustic phonon mode, which has the symmetry of the phase change, was observed at very low energies...

  13. The Structural Phase Transition in Solid DCN

    DEFF Research Database (Denmark)

    Dietrich, O. W.; Mackenzie, Gordon A.; Pawley, G. S.

    1976-01-01

    Neutron scattering measurements on deuterated hydrogen cyanide have shown that the structural phase transition from a tetragonal to an orthorhombic form at 160 K is a first order transition. A transverse acoustic phonon mode, which has the symmetry of the transition was observed at very low...

  14. Investigation on silver complexes of novel 1,2,3-triazole linked ...

    Indian Academy of Sciences (India)

    Abstract. The novel derivatives of 1,2,3-triazole linked crown ethers were investigated towards silver(I) ion coordination. The NMR measurements in deuterated methanol in different ratios of ligand and silver cation were studied. The experiments were performed in order to examine the way of binding Ag(I) ion by the ...

  15. Crystal lattice dependency of the free radicals found in irradiated glycine

    NARCIS (Netherlands)

    Bie, M.J.A. de; Braams, R.

    1969-01-01

    The EPR spectra, and hence the stable free radicals, are different for the - or γ-irradiated α-, β- and γ-crystal forms of polycrystalline glycone. Therefore comparisons of the trideutero-glycine EPR spectrum with the EPR spectra of non-deuterated glycine are open to question

  16. The Catalytic Role of Coronene for Molecular Hydrogen Formation

    DEFF Research Database (Denmark)

    Mennella, Vito; Hornekær, Liv; Thrower, John

    2012-01-01

    We present the results of an experimental study on the interaction of atomic deuterium with coronene films. The effects of D atom irradiation have been analyzed with infrared spectroscopy. The spectral changes provide evidence for deuteration of the outer edge coronene C sites via a D addition re...

  17. Pramana – Journal of Physics | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    The neutron diffraction data analysis of deuterated liquid 2-propanol at room temperature to define its molecular conformation is presented. 2-Propanol being a large molecule with twelve atomic sites, the conformation analysis is tricky and an improved method of data analysis is given. The intermolecular structural ...

  18. Pramana – Journal of Physics | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    An analysis of neutron diffraction data of liquid deuterated 1-propanol at room temperature to extract its molecular conformation is presented. Being a big molecule with twelve atomic sites, the analysis is tricky and needs careful consideration. The resulting molecular parameters are compared with electron diffraction (gas ...

  19. Deuterodiacetylmorphine as a marker for use of illicit heroin by addicts in a heroin-assisted treatment program

    NARCIS (Netherlands)

    Klous, Marjolein G.; Rook, Elisabeth J.; Hillebrand, Michel J. X.; van den Brink, Wim; van Ree, Jan M.; Beijnen, Jos H.

    2005-01-01

    In preparation for a treatment program concerning the medical coprescription of heroin and methadone to treatment-resistant addicts in the Netherlands, we studied a novel strategy for monitoring co-use of illicit (nonprescribed) heroin. A deuterated analogue of heroin was added (1:20) to

  20. Investigation on silver complexes of novel 1, 2, 3-triazole linked ...

    Indian Academy of Sciences (India)

    The novel derivatives of 1,2,3-triazole linked crown ethers were investigated towards silver(I) ion coordination. The NMR measurements in deuterated methanol in different ratios of ligand and silver cation were studied. The experiments were performed in order to examine the way of binding Ag(I) ion by the selected ligands.

  1. A Raman spectroscopy study on the effects of intermolecular hydrogen bonding on water molecules absorbed by borosilicate glass surface

    Science.gov (United States)

    Li, Fabing; Li, Zhanlong; Wang, Ying; Wang, Shenghan; Wang, Xiaojun; Sun, Chenglin; Men, Zhiwei

    2018-05-01

    The structural forms of water/deuterated water molecules located on the surface of borosilicate capillaries have been first investigated in this study on the basis of the Raman spectral data obtained at different temperatures and under atmospheric pressure for molecules in bulk and also for molecules absorbed by borosilicate glass surface. The strongest two fundamental bands locating at 3063 cm-1 (2438 cm-1) in the recorded Raman spectra are assigned here to the Osbnd H (Osbnd D) bond stretching vibrations and they are compared with the corresponding bands observed at 3124 cm-1 (2325 cm-1) in the Raman spectrum of ice Ih. Our spectroscopic observations have indicated that the structure of water and deuterated water molecules on borosilicate surface is similar to that of ice Ih (hexagonal phase of ice). These observations have also indicated that water molecules locate on the borosilicate surface so as to construct a bilayer structure and that strong and weak intermolecular hydrogen bonds are formed between water/deuterated molecules and silanol groups on borosilicate surface. In accordance with these findings, water and deuterated water molecules at the interface of capillary have a higher melting temperature.

  2. Bulletin of Materials Science | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Home; Journals; Bulletin of Materials Science. Ashish Nautiyal. Articles written in Bulletin of Materials Science. Volume 37 Issue 1 February 2014 pp 133-140. Soft mode and acoustic mode ferroelectric properties of deuterated triglycine sulphate crystal · Ashish Nautiyal Trilok Chandra Upadhyay · More Details Abstract ...

  3. Characterisation of spin-waves in copper(II) deuteroformate tetradeuterate: A square ¤S¤=1/2 Heisenberg antiferromagnet

    DEFF Research Database (Denmark)

    Clarke, S.J.; Harrison, A.; Mason, T.E.

    1999-01-01

    Copper(II) formate tetrahydrate (CFTH) is a model square S = 1/2 Heisenberg antiferromagnet with T-N = 16.54 +/- 0.05 K. The dispersion of spin-waves in the magnetic layers of a fully deuterated sample of this material has been mapped at 4.3 K by inelastic neutron scattering from the zone centre...

  4. Phonon Measurements and Model Calculations for Naphtalene-d8

    DEFF Research Database (Denmark)

    Mackenzie, Gordon A.; Pawley, G. S.; Dietrich, O. W.

    1977-01-01

    Measurements of the phonon dispersion curves in naphthalene-d8, (deuteration >99%), taken at 77K are presented. The experiments were done on two crystals, using the triple-axis neutron spectrometers at the medium flux reactor, DR3 at Riso. Most of the external or lattice modes have been measured...

  5. Ultra-high-performance liquid chromatography-tandem mass spectrometry measurement of climbazole deposition from hair care products onto artificial skin and human scalp

    NARCIS (Netherlands)

    Chen, G.; Hoptroff, M.; Fei, X.; Su, Y.; Janssen, H.-G.

    2013-01-01

    A sensitive and specific ultra-high-performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) method was developed and validated for the measurement of climbazole deposition from hair care products onto artificial skin and human scalp. Deuterated climbazole was used as the internal

  6. Contrast variation SANS experiments to the study of detergent ...

    Indian Academy of Sciences (India)

    The deuterated SDS was purchased from Cambridge Isotopes Laboratories. All these chemicals were used as supplied. The samples for SANS experiments were prepared by dissolving a known amount of triblock copolymer and detergent in. D2O. The use of D2O as solvent instead of H2O provides better contrast in ...

  7. 1H-Detected Solid-State NMR Studies of Water-Inaccessible Proteins In Vitro and In Situ

    NARCIS (Netherlands)

    Medeiros-Silva, João; Mance, Deni; Daniëls, Mark; Jekhmane, Miranda; Houben, Klaartje; Baldus, Marc; Weingarth, Markus

    2016-01-01

    1H detection can significantly improve solid-state NMR spectral sensitivity and thereby allows studying more complex proteins. However, the common prerequisite for 1H detection is the introduction of exchangeable protons in otherwise deuterated proteins, which has thus far significantly hampered

  8. Molecular conformation and liquid structure of 2-propanol through ...

    Indian Academy of Sciences (India)

    The neutron diffraction data analysis of deuterated liquid 2-propanol at room temperature to define its molecular conformation is presented. 2-Propanol being a large molecule with twelve atomic sites, the conformation analysis is tricky and an improved method of data analysis is given. The intermolecular structural ...

  9. ESR study of radiation damage in pyrimidines. Progress report, August 1, 1975--April 1, 1976

    International Nuclear Information System (INIS)

    Benson, B.W.

    1976-04-01

    The primary objective of this project is to develop general mechanisms for radiation damage to biomolecules using substituted pyrimidines as a model system. Results this year include a single crystal ESR study of 5-ethyl-5-isopropylbarbituric acid, development of the k-band microwave bridge, dose response measurements on methylated barbituric acid derivatives, and synthesis of several specifically deuterated uracil derivatives

  10. Analysis of the local dynamics of human insulin and a rapid-acting insulin analog by hydrogen/deuterium exchange mass spectrometry.

    Science.gov (United States)

    Nakazawa, Shiori; Ahn, Joomi; Hashii, Noritaka; Hirose, Kenji; Kawasaki, Nana

    2013-06-01

    Human insulin and insulin lispro (lispro), a rapid-acting insulin analog, have identical primary structures, except for the transposition of a pair of amino acids. This mutation results in alterations in their higher order structures, with lispro dissociating more easily than human insulin. In our previous study performed using hydrogen/deuterium exchange mass spectrometry (HDX/MS), differences were observed in the rates and levels of deuteration among insulin analog products, which were found to be related to their self-association stability. In this study, we carried out peptide mapping of deuterated human insulin and lispro to determine the regions responsible for these deuteration differences and to elucidate the type of structural changes that affect their HDX reactivity. We identified A3-6 and B22-24 as the 2 regions that showed distinct differences in the number of deuterium atoms incorporated between human insulin and lispro. These regions contain residues that are thought to participate in hexamerization and dimerization, respectively. We also determined that over time, the differences in deuteration levels decreased in A3-6, whereas they increased in B22-24, suggesting a difference in the dynamics between these 2 regions. This article is part of a Special Issue entitled: Mass spectrometry in structural biology. Copyright © 2012 Elsevier B.V. All rights reserved.

  11. Online hydrogen/deuterium exchange performed in the ion mobility cell of a hybrid mass spectrometer.

    Science.gov (United States)

    Nagy, Kornél; Redeuil, Karine; Rezzi, Serge

    2009-11-15

    The present paper describes the performance of online, gas-phase hydrogen/deuterium exchange implemented in the ion mobility cell of a quadrupole time-of-flight mass spectrometer. Deuterium oxide and deuterated methanol were utilized to create deuterated vapor that is introduced into the ion mobility region of the mass spectrometer. Hydrogen/deuterium exchange occurs spontaneously in the milliseconds time frame without the need of switching the instrument into ion mobility mode. The exchange was studied in case of low molecular weight molecules and proteins. The observed number of exchanged hydrogens was equal to the number of theoretically exchangeable hydrogens for all low molecular weight compounds. This method needs only minimal instrumental modifications, is simple, cheap, environment friendly, compatible with ultraperformance liquid chromatography, and can be implemented on commercially available instruments. It does not compromise choice of liquid chromatographic solvents and accurate mass or parallel-fragmentation (MS(E)) methods. The performance of this method was compared to that of conventional alternatives where the deuterated solvent is introduced into the cone gas of the instrument. Although the degree of exchange was similar between the two methods, the "cone gas method" requires 10 times higher deuterated solvent volumes (50 muL/min) and offers reduced sensitivity in the tandem mass spectrometry (MS/MS) mode. The presented method is suggested as a standard future element of mass spectrometers to aid online structural characterization of unknowns and to study conformational changes of proteins with hydrogen/deuterium exchange.

  12. Characterization of the Phase Transitions of Ethyl Substituted Polyhedral Oligomeric Silsesquioxane

    Science.gov (United States)

    2005-02-01

    deuterated ethyl POSS illustrates how changes in chemical labeling change transition properties . In addition, deuterium NMR was used to analyze the...Seeber, A.J.; Forstyh, M.; Forsyth, C.M.; Forsyth, S.A.; Annat , G.; MacFarlane, D.R. Phys. Chem. Chem. Phys., 2003, 5, 2692. 23. ManIntosh, M.R

  13. NMR imaging studies of coal

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Z.R.; Zhang, P.Z.; Ding, G.L.; Li, L.Y.; Ye, C.H. [University of Science and Technology, Beijing (China). Dept. of Chemistry

    1996-06-01

    The permeation transportation and swelling behavior of solvents into coal are investigated by NMR imaging using pyridine-d{sub 5} and acetone-d{sub 6}. Images of coal swollen with deuterated solvents illuminate proton distributions of mobile phases within the coal macromolecular networks. More information about the chemical and physical structure of coal can be obtained using NMR imaging techniques.

  14. Dynamics of solid alanine by means of nuclear magnetic resonance relaxometry

    Science.gov (United States)

    Kubica-Misztal, A.; Rochowski, P.; Florek-Wojciechowska, M.; Kruk, D.

    2017-04-01

    1H nuclear magnetic resonance relaxometry was applied to investigate the dynamics of l-alanine in the solid phase (powder). The experimental studies were carried out in a very broad frequency range, covering four orders of magnitude—from 4 kHz to 40 MHz (referring to the 1H resonance frequency) in order to probe motional processes of much different time scales by a single experiment. To get access to the dynamics of different proton groups of alanine, the 1H spin-lattice relaxation measurements were performed for non-deuterated and partially deuterated alanine. The experiments were carried out in the temperature range of 293 K-370 K (non-deuterated alanine) and 318 K-370 K (partially deuterated alanine). As a result of a thorough theoretical analysis of the extensive set of experimental results, three motional processes occurring on different time scales are identified and quantitatively described. The slowest process occurs on a time scale of μs and it is attributed to the collective dynamics of a 3D hydrogen bond network of alanine, while the intermediate, attributed to the dynamics of the NH3 group, corresponds to the range of tenths of ns. The fast process describes the rotation of the CH3 group.

  15. Determination of yields of gaseous products of carbohydrates radiolysis by mass spectrometry method

    International Nuclear Information System (INIS)

    Ivko, A.A.; Gol'din, S.I.; Bondarenko, N.T.; Markevich, S.V.; Sharpatyj, V.A.

    1977-01-01

    Possible complications are treated involved in the mass spectral study of the radiolytic products of deuterated carbohydrates. A method is proposed suitable for the evaluation of hydrogen isotopes relations and the content of deuterium in water. It has been possible to identify the major gaseous radiolytic products of glucose, polyglucan and dextran, and also to assess their radiation-chemical yields [ru

  16. Apparent molar volumes, isobaric expansion coefficients, and isentropic compressibilities, and their H/D isotope effects for some aqueous carbohydrate solutions

    International Nuclear Information System (INIS)

    Bernal, P.J.; Van Hook, W.A.

    1986-01-01

    The molar volumes, isobaric expansion coefficients, and isentropic compressibilities of solutions of a number of carbohydrates and their deuterated isomers were determined in H 2 O and D 2 O between 288.15 and 328.15 K and over a wide range of solute-to-solvent mole ratios. The results are discussed in terms of the specific hydration model. (author)

  17. Hybrid biomembrane substructure determination by contrast-variation analysis

    DEFF Research Database (Denmark)

    Gutberlet, T.; Steitz, R.; Howse, J.

    2002-01-01

    if exposed to an aqueous volume. Neutron reflectometry is applied to determine the thickness of the thin structures as they form. The combination of deuterated and protonated components allows us to highlight single layers. Thus the structural details of the system as it is subsequently built up...

  18. Determination of pyridine in soil and water samples of a polluted area

    NARCIS (Netherlands)

    Peters, R.J.B.; Renesse van Duivenbode, J.A.D. van

    1994-01-01

    A method for the analyses of pyridine in environmental samples is described. For soil samples a distillation procedure followed by an extraction, an acidic extraction or a Soxhlet extraction can be used. For water samples a distillation procedure followed by extraction can be employed. Deuterated

  19. Low temperature vibrational spectroscopy. II. Evidence for order–disorder phase transitions due to weak C–H···Cl hydrogen bonding in tetramethylammonium hexachloroplatinate (IV), -tellurate (IV), and -stannate (IV) and the related perdeuterated compounds

    DEFF Research Database (Denmark)

    Berg, Rolf W.

    1978-01-01

    The low frequency infrared and Raman spectra of normal and per-deuterated ((CH3)4N)2[MCl6] (M=Pt, Te, or Sn) have been measured at temperatures down to ~100 K and evidence for phase transitions was found. The spectra have been carefully assigned and it was shown that bands due to forbidden methyl...

  20. New investigations of organic compounds for targets with polarized hydrogen nuclei

    Science.gov (United States)

    Bunyatova, E. I.

    1995-02-01

    Pentanol C 5H 12O, polyethylene (CH 2) n and their deuterated analogues C 5D 12O and (CD 2) n are proposed as target materials. Particular attention is paid to the production of materials in a glass-like (amorphous) state.

  1. New investigations of organic compounds for targets with polarized hydrogen nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Bunyatova, E.I. [Joint Inst. for Nuclear Research, Dubna (Russian Federation)

    1995-03-01

    Pentanol C{sub 5}H{sub 12}O, polyethylene (CH{sub 2}){sub n} and their deuterated analogues C{sub 5}D{sub 12}O and (CD{sub 2}){sub n} are proposed as target materials. Particular attention is paid to the production of materials in a glass-like (amorphous) state. ((orig.))

  2. Solvent exchange module for LC-NMR hyphenation using machine vision-controlled droplet evaporation

    NARCIS (Netherlands)

    Schoonen, J.W.; Vulto, P.; Roo, de N.; Duynhoven, van J.P.M.; Linden, van der H.; Hankemeier, T.

    2013-01-01

    We report the use of pendant droplet evaporation for exchange of eluents for 1H nuclear magnetic resonance (1H NMR) purposes. Analytes are fed and retained in 500 nL droplets, which are concentrated by evaporation and subsequently redissolved in deuterated solvent. Droplet size is monitored by

  3. Small angle neutron scattering contrast variation reveals heterogeneities of interactions in protein gels.

    Science.gov (United States)

    Banc, A; Charbonneau, C; Dahesh, M; Appavou, M-S; Fu, Z; Morel, M-H; Ramos, L

    2016-06-28

    We propose a quantitative approach to probe the spatial heterogeneities of interactions in macromolecular gels, based on a combination of small angle X-ray (SAXS) and neutrons (SANS) scattering. We investigate the structure of model gluten protein gels and show that the gels display radically different SAXS and SANS profiles when the solvent is (at least partially) deuterated. The detailed analysis of the SANS signal as a function of the solvent deuteration demonstrates heterogeneities of sample deuteration at different length scales. The progressive exchange between the protons (H) of the proteins and the deuteriums (D) of the solvent is inhomogeneous and 60 nm large zones that are enriched in H are evidenced. In addition, at low protein concentration, in the sol state, solvent deuteration induces a liquid/liquid phase separation. Complementary biochemical and structure analyses show that the denser protein phase is more protonated and specifically enriched in glutenin, the polymeric fraction of gluten proteins. These findings suggest that the presence of H-rich zones in gluten gels would arise from the preferential interaction of glutenin polymers through a tight network of non-exchangeable intermolecular hydrogen bonds.

  4. Liquid chromatography-tandem mass spectrometric assay for the quantitative determination of the tyrosine kinase inhibitor quizartinib in mouse plasma using salting-out liquid-liquid extraction

    NARCIS (Netherlands)

    Retmana, Irene A; Wang, Jing; Schinkel, Alfred H; Schellens, Jan H M; Beijnen, Jos H; Sparidans, Rolf W

    2017-01-01

    A bioanalytical assay for quizartinib -a potent, and selective FLT3 tyrosine kinase inhibitor- in mouse plasma was developed and validated. Salting-out assisted liquid-liquid extraction (SALLE), using acetonitrile and magnesium sulfate, was selected as sample pretreatment with deuterated quizartinib

  5. Hydrogen/deuterium exchange studies of native rabbit MM-CK dynamics.

    Science.gov (United States)

    Mazon, Hortense; Marcillat, Olivier; Forest, Eric; Vial, Christian

    2004-02-01

    Creatine kinase (CK) isoenzymes catalyse the reversible transfer of a phosphoryl group from ATP onto creatine. This reaction plays a very important role in the regulation of intracellular ATP concentrations in excitable tissues. CK isoenzymes are highly resistant to proteases in native conditions. To appreciate localized backbone dynamics, kinetics of amide hydrogen exchange with deuterium was measured by pulse-labeling the dimeric cytosolic muscle CK isoenzyme. Upon exchange, the protein was digested with pepsin, and the deuterium content of the resulting peptides was determined by liquid chromatography coupled to mass spectrometry (MS). The deuteration kinetics of 47 peptides identified by MS/MS and covering 96% of the CK backbone were analyzed. Four deuteration patterns have been recognized: The less deuterated peptides are located in the saddle-shaped core of CK, whereas most of the highly deuterated peptides are close to the surface and located around the entrance to the active site. Their exchange kinetics are discussed by comparison with the known secondary and tertiary structures of CK with the goal to reveal the conformational dynamics of the protein. Some of the observed dynamic motions may be linked to the conformational changes associated with substrate binding and catalytic mechanism.

  6. Compression of glycolide-h4 to 6GPa

    DEFF Research Database (Denmark)

    Hutchison, Ian B.; Bull, Craig L.; Marshall, William G.

    2017-01-01

    This study details the structural characterization of glycolide-h4 as a function of pressure to 6GPa using neutron powder diffraction on the PEARL instrument at ISIS Neutron and Muon source. Glycolide-h4, rather than its deuterated isotopologue, was used in this study due to the difficulty of deu...

  7. Synthesis and Characterization of Novel Dimeric Ionic Liquids by Conventional Approaches

    Directory of Open Access Journals (Sweden)

    Yatimah Alias

    2008-07-01

    Full Text Available The 1H-NMR shifts of the imidazolium protons of some novel dimeric ionic liquids were examined in various deuterated solvents. Interactions between the solvent and the imidazolium salt of butyl substituted ionic liquids were observed to give higher chemical shifts than methyl substitution.

  8. Excited state intramolecular charge transfer reaction in 4-(1 ...

    Indian Academy of Sciences (India)

    Administrator

    Abstract. Excited state intramolecular charge transfer reaction of 4-(1-azetidinyl) benzonitrile (P4C) in deuterated and normal methanol, ethanol and acetonitrile has been studied in order to investigate the solvent isotope effects on reaction rates and yields. These quantities (reaction rates and yields) along with several.

  9. Holographic Gratings for Slow-Neutron Optics

    Science.gov (United States)

    Klepp, Juergen; Pruner, Christian; Tomita, Yasuo; Geltenbort, Peter; Drevenšek-Olenik, Irena; Gyergyek, Saso; Kohlbrecher, Joachim; Fally, Martin

    2012-01-01

    Recent progress in the development of holographic gratings for neutron-optics applications is reviewed. We summarize the properties of gratings recorded in deuterated (poly)methylmethacrylate, holographic polymer-dispersed liquid crystals and nanoparticle-polymer composites revealed by diffraction experiments with slow neutrons. Existing and anticipated neutron-optical instrumentations based on holographic gratings are discussed.

  10. Dynamics of water transport and storage in conifers studied with deuterium and heat tracing techniques.

    Science.gov (United States)

    F.C. Meinzer; J.R. Brooks; J.-C. Domec; B.L. Gartner; J.M. Warren; D.R. Woodruff; K. Bible; D.C. Shaw

    2006-01-01

    The volume and complexity of their vascular systems make the dynamics of tong-distance water transport in large trees difficult to study. We used heat and deuterated water (D20) as tracers to characterize whole-tree water transport and storage properties in individual trees belonging to the coniferous species Pseudotsuga menziesii...

  11. Structure determination of resorcinol rotamers by high-resolution UV spectroscopy

    NARCIS (Netherlands)

    Myszkiewicz, G.; Meerts, W.L.; Ratzer, C.; Schmitt, M.

    2005-01-01

    The rotationally resolved S-1 <- S-0 electronic origins of several deuterated resorcinol rotamers cooled in a molecular beam have been recorded. An automated assignment of the observed spectra has been performed using a genetic algorithm approach with an asymmetric rotor Hamiltonian. The structures

  12. Biosketch

    Indian Academy of Sciences (India)

    Nitash

    "Phase Diagrams of Blends of Polyisobutylene and Deuterated Polybutadiene as a. Function of Chain Length", A.J. Nedoma, P. Lai, A. Jackson, M.L. Robertson, N.S.. Wanakule, N.P. Balsara, Macromolecules, vol. 44, pg. 3077-3084, 2011. 153. "Effect of Nanoscale Morphology on Selective Ethanol Transport Through Block.

  13. Preliminary neutron scattering studies of the Type I restriction-modification enzyme M.Ahdl

    Energy Technology Data Exchange (ETDEWEB)

    Callow, Philip [Deuteration Laboratory, ILL, Grenoble, France/Keele University (United Kingdom)]. E-mail: callow@ill.fr; Timmins, Peter [Large Scale Structures Group, ILL, Grenoble (France); Kneale, Geoff [Biophysics Laboratories, Portsmouth University (United Kingdom)

    2006-11-15

    Type I restriction-modification (R-M) systems encode multisubunit/multidomain enzymes. Two genes (M and S) are required to form the 160 kDa methyltransferase that methylates a specific base within the recognition sequence and protects DNA from cleavage by the endonuclease. Small angle neutron scattering (SANS) revealed an unusually large structural change in the EcoR124I methyltransferase following DNA binding; this involves a major repositioning of the subunits of the enzyme, resulting in a 60 A reduction in the dimensions of the enzyme on forming a complex with DNA. The related methyltransferase M.Ahdl, with stoichiometry M{sub 2}S{sub 2} has been prepared in two protonated/deuterated states (S and M subunits protonated, S deuterated and M protonated) for which SANS data have been collected in a number of H:D solvent contrasts. The contrast match point of the selectively deuterated enzyme confirms the successful reconstitution of the enzyme with deuterated S subunits. Ab initio shape determination using this contrast matched data is in progress to determine the subunit organization of M.Ahdl and the large change in structure that occurs on DNA binding.

  14. Investigation of the $^{9}$Li + $^{2}$H $\\to ^{8}$Li + t reaction at REX-ISOLDE

    CERN Document Server

    Jeppesen, H B; Nilsson, T; Ames, F

    2006-01-01

    The one-neutron transfer reaction has been investigated in an inverse kinematics experiment by bombarding a deuterated polypropylene target with a 2.36 MeV/u $^{9}$Li beam from the post-accelerator REX-ISOLDE at CERN. Excitation energies in $^{8}$Li as well as angular distributions of the tritons were obtained and spectroscopic factors deduced.

  15. A Raman spectroscopy study on the effects of intermolecular hydrogen bonding on water molecules absorbed by borosilicate glass surface.

    Science.gov (United States)

    Li, Fabing; Li, Zhanlong; Wang, Ying; Wang, Shenghan; Wang, Xiaojun; Sun, Chenglin; Men, Zhiwei

    2018-05-05

    The structural forms of water/deuterated water molecules located on the surface of borosilicate capillaries have been first investigated in this study on the basis of the Raman spectral data obtained at different temperatures and under atmospheric pressure for molecules in bulk and also for molecules absorbed by borosilicate glass surface. The strongest two fundamental bands locating at 3063cm -1 (2438cm -1 ) in the recorded Raman spectra are assigned here to the OH (OD) bond stretching vibrations and they are compared with the corresponding bands observed at 3124cm -1 (2325cm -1 ) in the Raman spectrum of ice Ih. Our spectroscopic observations have indicated that the structure of water and deuterated water molecules on borosilicate surface is similar to that of ice Ih (hexagonal phase of ice). These observations have also indicated that water molecules locate on the borosilicate surface so as to construct a bilayer structure and that strong and weak intermolecular hydrogen bonds are formed between water/deuterated molecules and silanol groups on borosilicate surface. In accordance with these findings, water and deuterated water molecules at the interface of capillary have a higher melting temperature. Copyright © 2018. Published by Elsevier B.V.

  16. Excited state intramolecular charge transfer reaction in 4-(1 ...

    Indian Academy of Sciences (India)

    Excited state intramolecular charge transfer reaction of 4-(1-azetidinyl) benzonitrile (P4C) in deuterated and normal methanol, ethanol and acetonitrile has been studied in order to investigate the solvent isotope effects on reaction rates and yields. These quantities (reaction rates and yields) along with several other ...

  17. Selective control of HOD photodissociation using CW lasers

    Indian Academy of Sciences (India)

    WINTEC

    Keywords. Selective bond-breaking; photodynamic control; photodissociation; CW laser; field optimized initial state (FOIST). 1. Introduction. The promise of using ultra short, high intensity lasers as molecular scissors to cleave bonds selectively continues to attract much theoretical and experimental effort.1–6 The deuterated ...

  18. Temperature effects on the structure of liquid D-methanol through ...

    Indian Academy of Sciences (India)

    Here, the liquid consists of deuterated methanol and neutron data was collected on the high- diffractometer at Dhruva, BARC. The corrected data at elevated temperatures (BP (boiling point) and double the BP) show that there is a large change in the H-bonded structure of this liquid. The pre-peak or hump, known to be ...

  19. Methods of synthesis of deuterium labelled lipids

    International Nuclear Information System (INIS)

    Bragina, N.A.; Chupin, V.V.

    1997-01-01

    Methods for synthesis of deuterium-labelled hydrophobic and hydrophilic lipid molecules and ways of obtaining selectively and completely deuterized phospholipids and their analogues are considered. The deuterium-labelled lipids are used for studies on structural organization and functioning of biological membranes, including studies with the NMP and neutron-diffraction methods of lipid-lipid and lipid-protein interactions

  20. Confirmatory analysis of acetylgestagens in plasma using liquid chromatography-tandem mass spectrometry

    DEFF Research Database (Denmark)

    Mortensen, Sarah Kelly; Pedersen, Mikael

    2007-01-01

    -assisted liquid-liquid extraction (LLE) on Extrelut NT columns followed by C18 solid-phase extraction (SPE). Analytes were analysed using liquid chromatography-tandem mass spectrometry (I-C-MS/MS), and quantification was performed using matrix-matched calibration standards in combination with deuterated internal...

  1. Vibrational echo spectral observables and frequency fluctuations of ...

    Indian Academy of Sciences (India)

    Deepak Ojha

    Abstract. Aqueous solution of a fluoride ion at 300K is studied using the method of ab initio molecular dynamics simulation. Instantaneous fluctuations in vibrational frequencies of local OD stretch modes of deuterated water are calculated using a time-series analysis of the simulated trajectory. The vibrational spectral.

  2. Human Lipoproteins at Model Cell Membranes

    DEFF Research Database (Denmark)

    Browning, K L; Lind, T K; Maric, S

    2017-01-01

    exchange and lipid removal can be distinguished thanks to the combined use of hydrogenated and tail-deuterated lipids. Both HDL and LDL remove lipids from the bilayer and deposit hydrogenated material into the lipid bilayer, however, the extent of removal and exchange depends on LP type. These results...

  3. ESR study on hydrogen-atom abstraction in cryogenic organic solids

    International Nuclear Information System (INIS)

    Ichikawa, Tsuneki

    1995-01-01

    The present paper summarizes our recent results on the hydrogen-atom abstraction from protiated alkane molecule by deuterium atoms in cryogenic deuterated organic solids, obtained by the X-band ESR and electron spin-echo measurements of the product alkyl radicals at cryogenic temperatures. (J.P.N.)

  4. Synthesis, Characterization and Antimicrobial Activities of Some ...

    African Journals Online (AJOL)

    user

    of metal ions with vitamin.111: Synthesis and infrared spectra of metal complexes with pyridoxamine and pyridoxine. Inorg. Chim. Acta, 46, 191-197. Gary, J and Adeyemo, A (1981) Interaction of vitamin B1 with Zn(II), Cd (II) and Hg(II) in. Deuterated Dimethyl Sulfoxide. Inorg. Chim. Acta, 55, 93-98. Gohzalez-vergara, E ...

  5. Synthetic use of the primary kinetic isotope effect in hydrogen atom transfer 2: generation of captodatively stabilised radicals.

    Science.gov (United States)

    Wood, Mark E; Bissiriou, Sabine; Lowe, Christopher; Windeatt, Kim M

    2013-04-28

    Using C-3 di-deuterated morpholin-2-ones bearing N-2-iodobenzyl and N-3-bromobut-3-enyl radical generating groups, only products derived from the more stabilised C-3, rather than the less stabilised C-5 translocated radicals, were formed after intramolecular 1,5-hydrogen atom transfer, suggesting that any kinetic isotope effect present was not sufficient to offset captodative stabilisation.

  6. Investigation on silver complexes of novel 1,2,3-triazole linked ...

    Indian Academy of Sciences (India)

    The novel derivatives of 1,2,3-triazole linked crown ethers were investigated towards silver(I) ion coordination. The NMR measurements in deuterated methanol in different ratios of ligand and silver cation were studied. The experiments were performed in order to examine the way of binding Ag(I) ion by the selected ligands.

  7. Thermodynamics and crystal chemistry of rhomboclase, (H5O2)Fe(SO4)2·2H2O, and the phase (H3O)Fe(SO4)2 and implications for acid mine drainage

    DEFF Research Database (Denmark)

    Majzlan, Juraj; Grevel, Klaus Dieter; Kiefer, Boris

    2017-01-01

    the general topology of the phase diagram, but the position of the calculated solubility curves deviates substantially from the experimental data. Solid-state 2H MAS NMR spectra on deuterated rhomboclase show two isotropic chemical shifts δiso(2H) = of 8 ± 1 and 228 ± 1 ppm, assigned to D5O2 + and Fe-OD2...

  8. Architecture of the E.coli 70S ribosome

    DEFF Research Database (Denmark)

    Burkhardt, N.; Diedrich, G.; Nierhaus, K.H.

    1997-01-01

    The 70S ribosome from E.coli was analysed by neutron scattering focusing on the shape and the internal protein-RNA-distribution of the complex. Measurements on selectively deuterated 70S particles and free 30S and 50S subunits applying conventional contrast variation and proton-spin contrast...

  9. Temperature dependence of (+)-catechin pyran ring proton coupling constants as measured by NMR and modeled using GMMX search methodology

    Science.gov (United States)

    Fred L. Tobiason; Stephen S. Kelley; M. Mark Midland; Richard W. Hemingway

    1997-01-01

    The pyran ring proton coupling constants for (+)-catechin have been experimentally determined in deuterated methanol over a temperature range of 213 K to 313 K. The experimental coupling constants were simulated to 0.04 Hz on the average at a 90 percent confidence limit using a LAOCOON method. The temperature dependence of the coupling constants was reproduced from the...

  10. Decomposition of thin titanium deuteride films: thermal desorption kinetics studies combined with microstructure analysis

    NARCIS (Netherlands)

    Lisowski, W.F.; Keim, Enrico G.; Kaszkur, Zbigniew; Smithers, M.A.; Smithers, Mark A.

    2008-01-01

    The thermal evolution of deuterium from thin titanium films, prepared under UHV conditions and deuterated in situ at room temperature, has been studied by means of thermal desorption mass spectrometry (TDMS) and a combination of scanning electron microscopy (SEM), transmission electron microscopy

  11. Rotational spectra, nuclear quadrupole hyperfine tensors, and conformational structures of the mustard gas simulent 2-chloroethyl ethyl sulfide

    Science.gov (United States)

    Tubergen, M. J.; Lesarri, A.; Suenram, R. D.; Samuels, A. C.; Jensen, J. O.; Ellzy, M. W.; Lochner, J. M.

    2005-10-01

    Rotational spectra have been recorded for both the 35Cl and 37Cl isotopic forms of two structural conformations of 2-chloroethyl ethyl sulfide (CEES). The rotational constants of the 35Cl and 37Cl isotopomers were used to identify the conformational isomers. A total of 236 hyperfine transitions have been assigned for 47 rotational transitions of the 35Cl isotope of a GGT conformer, and 146 hyperfine have been assigned for 37 rotational transitions of the 37Cl isotopomer. For the second conformer, a total of 128 (110) hyperfine and 30 (28) rotational transitions have also been assigned to the 35Cl ( 37Cl) isotopes of a TGT conformation. The extensive hyperfine splitting data, measured to high resolution with a compact Fourier transform microwave spectrometer, were used to determine both the diagonal and off-diagonal elements of the 35Cl and 37Cl nuclear quadrupole coupling tensors in the inertial tensor principal axis system. The experimental rotational constant data, as well as the 35Cl and 37Cl nuclear quadrupole coupling tensors, were compared to the results from 27 optimized ab initio (HF/6-311++G ∗∗ and MP2/6-311++G ∗∗) model structures.

  12. Rotational spectra of the Xe-(H2O)2 van der Waals trimer: xenon as a probe of electronic structure and dynamics.

    Science.gov (United States)

    Wen, Qing; Jäger, Wolfgang

    2007-03-22

    Rotational spectra of three isotopomers of the Xe-(H2O)2 van der Waals trimer were recorded using a pulsed-nozzle, Fourier transform microwave spectrometer. Nine [nine, four] a-type and twelve [eleven, seven] b-type transitions were measured for the 132Xe-(H2O)2 [129Xe-(H2O)2, 131Xe-(H2O)2] isotopomer. The determined rotational and centrifugal distortion constants were used to extract information about the structure and vibrational motions of the complex. The nuclear quadrupole hyperfine structures due to the 131Xe (nuclear spin quantum number I=3/2) nucleus were also detected. The large value of the off-diagonal nuclear quadrupole coupling constant chiab in particular provides detailed insight into the electronic environment of the xenon atom and the orientations of the water molecules within the complex. An effective structure that best reproduces the experimental 131Xe nuclear quadrupole coupling constants is rationalized by ab initio calculations. An overall goal of this line of work is to determine how the successive solvation of a xenon atom with water molecules affects the xenon electron distribution and its intermolecular interactions. The results may provide molecular level interpretations of 129Xe NMR data from, for example, imaging experiments.

  13. Detection of HC5N and HC7N Isotopologues in TMC-1 with the Green Bank Telescope

    Science.gov (United States)

    Burkhardt, A. M.; Herbst, E.; Kalenskii, S. V.; McCarthy, M. C.; Remijan, A. J.; McGuire, B. A.

    2018-03-01

    We report the first interstellar detection of DC7N and six 13C-bearing isotopologues of HC7N towards the dark cloud TMC-1 through observations with the Green Bank Telescope, and confirm the recent detection of HC515N. For the average of the 13C isotopomers, DC7N, and HC515N, we derive column densities of 1.9(2) × 1011, 2.5(9) × 1011, and 1.5(4) × 1011 cm-2, respectively. The resulting isotopic ratios are consistent with previous values derived from similar species in the source, and we discuss the implications for the formation chemistry of the observed cyanopolyynes. Within our uncertainties, no significant 13C isotopomer variation is found for HC7N, limiting the significance CN could have in its production. The results further show that, for all observed isotopes, HC5N may be isotopically depleted relative to HC3N and HC7N, suggesting that reactions starting from smaller cyanopolyynes may not be efficient to form HCnN. This leads to the conclusion that the dominant production route may be the reaction between hydrocarbon ions and nitrogen atoms.

  14. Response to 'Comments on the uncertainties in isotope patterns of molecules' by J. Meija and Z. Mester (doi:10.1016/j.aca.2010.09.029)

    International Nuclear Information System (INIS)

    Garcia Alonso, J.I.; Rodriguez-Gonzalez, P.

    2011-01-01

    This manuscript presents a response to a recently published article in Analytica Chimica Acta by J. Meija and Z. Mester ( (doi:10.1016/j.aca.2010.09.029)) in which the authors comment on some aspects of our previous work entitled 'Determination of the uncertainties in the theoretical mass isotopomer distribution of molecules' Anal. Chim. Acta 664 (2010) 68-76. We present here new arguments to support our previous findings and to clarify some aspects regarding to the calculation of the uncertainty of isotope patterns. The uncertainty calculations proposed by Meija and Mester for carbon-only clusters have been compared with our previously developed first-order model based on the spreadsheet approach described by Kragten (J. Kragten, Analyst 119 (1994) 2161). The results obtained in this comparison demonstrate that the Kragten procedure can be applied safely for the calculation of the uncertainties in the mass isotopomer distribution of molecules when the u average value is calculated. In addition the procedure provides good results even when the first-order error propagation law failed for some particular cases (C 93 and C 186 clusters).

  15. A spectroscopic and computational investigation of the conformational structural changes induced by hydrogen bonding networks in the glycidol-water complex.

    Science.gov (United States)

    Conrad, A R; Teumelsan, N H; Wang, P E; Tubergen, M J

    2010-01-14

    Rotational spectra were recorded in natural abundance for the (13)C isotopomers of two conformers of glycidol. Moments of inertia from the (13)C isotopomers were used to calculate the substitution coordinates and C-C bond lengths of two glycidol monomer conformations. The structures of seven different conformational minima were found from ab initio (MP2/6-311++G(d,p)) optimizations of glycidol-water. The rotational spectrum of glycidol-water was recorded using microwave spectroscopy, and the rotational constants were determined to be A = 3902.331 (11) MHz, B = 2763.176 (3) MHz, and C = 1966.863 (3) MHz. Rotational spectra were also recorded for glycidol-H(2)(18)O, glycidol-D(b)OH, and glycidol-d(O)-D(2)O. The rotational spectra were assigned to the lowest-energy ab initio structure, and the structure was improved by fitting to the experimental moments of inertia. The best-fit structure shows evidence for structural changes in glycidol to accommodate formation of the intermolecular hydrogen bonding network: the O-C-C-O torsional angle in glycidol was found to increase from 40.8 degrees for the monomer to 49.9 degrees in the water complex.

  16. Insights into the role of oxidative stress in the pathology of Friedreich ataxia using peroxidation resistant polyunsaturated fatty acids

    Directory of Open Access Journals (Sweden)

    M. Grazia Cotticelli

    2013-01-01

    Full Text Available Friedreich ataxia is an autosomal recessive, inherited neuro- and cardio-degenerative disorder characterized by progressive ataxia of all four limbs, dysarthria, areflexia, sensory loss, skeletal deformities, and hypertrophic cardiomyopathy. Most disease alleles have a trinucleotide repeat expansion in the first intron of the FXN gene, which decreases expression of the encoded protein frataxin. Frataxin is involved in iron–sulfur-cluster (ISC assembly in the mitochondrial matrix, and decreased frataxin is associated with ISC-enzyme and mitochondrial dysfunction, mitochondrial iron accumulation, and increased oxidative stress. To assess the role of oxidative stress in lipid peroxidation in Friedreich ataxia we used the novel approach of treating Friedreich ataxia cell models with polyunsaturated fatty acids (PUFAs deuterated at bis-allylic sites. In ROS-driven oxidation of PUFAs, the rate-limiting step is hydrogen abstraction from a bis-allylic site; isotopic reinforcement (deuteration of bis-allylic sites slows down their peroxidation. We show that linoleic and α-linolenic acids deuterated at the peroxidation-prone bis-allylic positions actively rescue oxidative-stress-challenged Friedreich ataxia cells. The protective effect of the deuterated PUFAs is additive in our models with the protective effect of the CoQ10 analog idebenone, which is thought to decrease the production of free radicals. Moreover, the administration of deuterated PUFAs resulted in decreased lipid peroxidation as measured by the fluorescence of the fatty acid analog C11-BODIPY (581/591 probe. Our results are consistent with a role for lipid peroxidation in Friedreich ataxia pathology, and suggest that the novel approach of oral delivery of isotope-reinforced PUFAs may have therapeutic potential in Friedreich ataxia and other disorders involving oxidative stress and lipid peroxidation.

  17. Use of deuterium labeling by high-temperature solid-state hydrogen-exchange reaction for mass spectrometric analysis of bradykinin biotransformation.

    Science.gov (United States)

    Kopylov, Arthur T; Myasoedov, Nikolay F; Dadayan, Alexander K; Zgoda, Victor G; Medvedev, Alexei E; Zolotarev, Yurii A

    2016-06-15

    Studies of molecular biodegradation by mass spectrometry often require synthetic compounds labeled with stable isotopes as internal standards. However, labeling is very expensive especially when a large number of compounds are needed for analysis of biotransformation. Here we describe an approach for qualitative and quantitative analysis using bradykinin (BK) and its in vitro degradation metabolites as an example. Its novelty lies in the use of deuterated peptides which are obtained by a high-temperature solid-state exchange (HSCIE) reaction. Deuterated and native BK were analyzed by positive electrospray ionization high-resolution mass spectrometry (ESI-HRMS) using an Orbitrap Fusion mass spectrometer. High-energy collision-induced dissociation (HCD) experiments were performed on [M+H](+) and [M+2H](2+) ions in targeted-MS(2) mode with adjusted normalized HCD value. After the HSCIE reaction, each amino acid residue of the deuterated peptide contained deuterium atoms and the average degree of substitution was 5.5 atoms per the peptide molecule. The deuterated peptide demonstrated the same chromatographic mobility as the unlabeled counterpart, and lack of racemization during substitution with deuterium. Deuterium-labeled and unlabeled BKs were incubated with human plasma and their corresponding fragments BK(1-5) and BK(1-7), well known as the major metabolites, were detected. Quantitative assays demonstrated applicability of the heavy peptide for both sequencing and quantification of generated fragments. Applicability of the HSCIE deuterated peptide for analysis of routes of its degradation has been shown in in vitro experiments. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  18. Net photosynthesis in Sphagnum mosses has increased in response to the last century's 100 ppm increase in atmospheric CO2

    Science.gov (United States)

    Serk, Henrik; Nilsson, Mats; Schleucher, Jurgen

    2017-04-01

    Peatlands store >25% of the global soil C pool, corresponding to 1/3 of the contemporary CO2-C in the atmosphere. The majority of the accumulated peat is made up by remains of Sphagnum peat mosses. Thus, understanding how various Sphagnum functional groups respond, and have responded, to increasing atmospheric CO2 and temperature constitutes a major challenge for our understanding of the role of peatlands under a changing climate. We have recently demonstrated (Ehlers et al., 2015, PNAS) that the abundance ratio of two deuterium isotopomers (molecules carrying D at specific intramolecular positions, here D6R/S) of photosynthetic glucose reflects the ratio of oxygenation to carboxylation metabolic fluxes at Rubisco. The photosynthetic glucose is prepared from various plant carbohydrates including cellulose. This finding has been established in CO2 manipulation experiments and observed in carbohydrate derived glucose isolated from herbarium samples of all investigated C-3 species. The isotopomer ratio is connected to specific enzymatic processes thus allowing for mechanistic implicit interpretations. Here we demonstrate a clear increase in net photosynthesis of Sphagnum fuscum in response to the increase of 100 ppm CO2 during the last century as deduced from analysis on S. fuscum remains from peat cores. The D6R/S ratio declines from bottom to top in peat cores, indicating CO2-driven reduction of photorespiration in contemporary moss biomass. In contrast to the hummock-forming S. fuscum, hollow-growing species, e.g. S. majus did not show this response or gave significantly weaker response, suggesting important ecological consequences of rising CO2 on peatland ecosystem services. We hypothesize that photosynthesis in hollow-growing species under water saturation is fully or partly disconnected from the atmospheric CO2 partial pressure and thus showing weaker or no response to increased atmospheric CO2. To further test the field observations we grow both hummock and

  19. Catabolism of Branched Chain Amino Acids Contributes Significantly to Synthesis of Odd-Chain and Even-Chain Fatty Acids in 3T3-L1 Adipocytes.

    Directory of Open Access Journals (Sweden)

    Scott B Crown

    Full Text Available The branched chain amino acids (BCAA valine, leucine and isoleucine have been implicated in a number of diseases including obesity, insulin resistance, and type 2 diabetes mellitus, although the mechanisms are still poorly understood. Adipose tissue plays an important role in BCAA homeostasis by actively metabolizing circulating BCAA. In this work, we have investigated the link between BCAA catabolism and fatty acid synthesis in 3T3-L1 adipocytes using parallel 13C-labeling experiments, mass spectrometry and model-based isotopomer data analysis. Specifically, we performed parallel labeling experiments with four fully 13C-labeled tracers, [U-13C]valine, [U-13C]leucine, [U-13C]isoleucine and [U-13C]glutamine. We measured mass isotopomer distributions of fatty acids and intracellular metabolites by GC-MS and analyzed the data using the isotopomer spectral analysis (ISA framework. We demonstrate that 3T3-L1 adipocytes accumulate significant amounts of even chain length (C14:0, C16:0 and C18:0 and odd chain length (C15:0 and C17:0 fatty acids under standard cell culture conditions. Using a novel GC-MS method, we demonstrate that propionyl-CoA acts as the primer on fatty acid synthase for the production of odd chain fatty acids. BCAA contributed significantly to the production of all fatty acids. Leucine and isoleucine contributed at least 25% to lipogenic acetyl-CoA pool, and valine and isoleucine contributed 100% to lipogenic propionyl-CoA pool. Our results further suggest that low activity of methylmalonyl-CoA mutase and mass action kinetics of propionyl-CoA on fatty acid synthase result in high rates of odd chain fatty acid synthesis in 3T3-L1 cells. Overall, this work provides important new insights into the connection between BCAA catabolism and fatty acid synthesis in adipocytes and underscores the high capacity of adipocytes for metabolizing BCAA.

  20. Wave-packet dynamics in alkaline dimers. Investigation and control through coherent excitation with fs-pulses; Wellenpaketdynamik in Alkali-Dimeren. Untersuchung und Steuerung durch kohaerente Anregung mit fs-Pulsen

    Energy Technology Data Exchange (ETDEWEB)

    Sauer, F.N.B.

    2007-07-01

    During my PhD thesis I investigated alkaline dimers with coherent control in a molecular beam as well as with pump-probe spectroscopy in a magneto-optical trap (MOT). The aim of the coherent control experiments were the isotope selective ionization with phase- and amplitude-shaped fs-pulses. Chapter 4 described the gained results of isotope selective ionization of NaK and KRb in a molecular beam by using different pulse formers. For the NaK dimer was the reached optimization factor R{sub Ph} and {sub Ampl}{sup 770}=R{sub max}/R{sub min}=25 between maximization and minimization of the isotopomer ratio ({sup 23}Na{sup 39}K){sup +}/({sup 23}Na{sup 41}K){sup +} with phase and amplitude modulation of the fs-pulse with a central wavelength of {lambda}=770 nm. From the electronic ground-state X(1){sup 1}{sigma}{sup +};{nu}''=0 transfers a one-photon-excitation population in the first excited A(2) {sup 1}{sigma}{sup +} state. The coherent control experiment on KRb was used to maximize and minimize the isotopomer ratio ({sup 124}KRb){sup +}/({sup 126}KRb){sup +}. It was the first coherent control experiment with a spectral resolution of 1.84 cm{sup -1}/Pixel. For the phase and amplitude optimization was the received optimization factor between minimization and maximization of the isotopomer ratio R{sub Ph} and {sub Ampl}=R{sub max}/R{sub min}=7 at a central wavelength of 840 nm. The results showed a stepwise excitation process from the electronic ground-state in the first excited (2){sup 1}{sigma}{sup +} state with a further excitation, that is possible over three resonant energy potential curves into the ionic ground-state. In the second part of my thesis I realized pump-probe spectroscopy of Rb{sub 2} dimers in a dark SPOT. (orig.)

  1. Isotope effects on chemical equilibria

    International Nuclear Information System (INIS)

    Golding, P.D.

    1974-01-01

    The thermodynamic equilibrium constants of three deuterated substituted acetic acids are reported. The calculation of secondary isotope effects of the second kind for the three isotopic acid pairs has been accomplished by the appropriate comparison of thermodynamic equilibrium constants, and by the comparison of isotopic slopes. The effect of substituent variation on the isotope effects reported here disqualifies the simple inductive model as a legitimate description of secondary isotope effects of the second kind. The correlation of diminishing isotope effect per deuterium atom with increasing acidity is also invalidated by the present results. The syntheses of 9-thia-9,10-dihydrophenanthrene-9-oxide and thioxanthene-10-oxide are described. These compounds have been partially deuterated at their respective methylene positions. Spectral evidence indicates stereoselectivity of the methylene protons in the exchange reactions of both compounds. (author)

  2. Protonated Nitrous Oxide, NNOH(+): Fundamental Vibrational Frequencies and Spectroscopic Constants from Quartic Force Fields

    Science.gov (United States)

    Huang, Xinchuan; Fortenberry, Ryan C.; Lee, Timothy J.

    2013-01-01

    The interstellar presence of protonated nitrous oxide has been suspected for some time. Using established high-accuracy quantum chemical techniques, spectroscopic constants and fundamental vibrational frequencies are provided for the lower energy O-protonated isomer of this cation and its deuterated isotopologue. The vibrationally-averaged B0 and C0 rotational constants are within 6 MHz of their experimental values and the D(subJ) quartic distortion constants agree with experiment to within 3%. The known gas phase O-H stretch of NNOH(+) is 3330.91 cm(exp-1), and the vibrational configuration interaction computed result is 3330.9 cm(exp-1). Other spectroscopic constants are also provided, as are the rest of the fundamental vibrational frequencies for NNOH(+) and its deuterated isotopologue. This high-accuracy data should serve to better inform future observational or experimental studies of the rovibrational bands of protonated nitrous oxide in the ISM and the laboratory.

  3. A new high pressure phase of sodium formate dihydrate; an experimental and computational study.

    Science.gov (United States)

    Walker, Martin; Morrison, Carole A; Allan, David R; Pulham, Colin R; Marshall, William G

    2007-05-28

    As part of an on-going programme to study the high pressure structural behaviour of hydrated small molecular systems, sodium formate dihydrate has been studied using high pressure single crystal X-ray and neutron powder diffraction methods. A new phase was initially identified at 17 kbar by X-ray diffraction and high level quantum mechanical calculations completed the structure, allowing definitive hydrogen atom positioning. The resulting structure compared favourably with that found subsequently by high pressure neutron diffraction. The neutron diffraction study also revealed that the deuterated form, NaDCO(2).2D(2)O, is stable in a different structural form to that of the non-deuterated material at ambient pressure. The structure of this phase is related to that of the high pressure phase via a simple translation of the molecular layers.

  4. Study of the structure of PyHReO4 under high pressure

    International Nuclear Information System (INIS)

    Kichanov, S. E.; Kozlenko, D. P.; Wasicki, J. W.; Czarnecki, P.; Glazkov, V. P.; Nawrocik, W.; Savenko, B. N.; Lathe, C.

    2007-01-01

    The structure of deuterated pyridinium perrhenate (d 5 PyH)ReO 4 (C 5 D 5 NHReO 4 ) is studied by X-ray diffraction at room temperature and pressures up to 3.5 GPa and by neutron diffraction in the temperature range 10-293 K and at pressures up to 2.0 GPa. Under normal conditions, this compound belongs to the orthorhombic space group Cmc2 1 (ferroelectric phase II). At room temperature and pressures above P > 0.7 GPa, a transition to an orthorhombic phase (paraelectric phase II) is observed. This paraelectric phase is described by the space group Cmcm. At a pressure as high as P = 2.0 GPa, phase I remains stable at temperatures down to 10 K. This fact indicates that the high pressure suppresses the ferroelectric state in deuterated pyridinium perrhenate (d 5 PyH)ReO 4

  5. Phyllitic minerals in hydrothermal uranium deposits. I. Crystalchemistry of relict and newly formed micas

    International Nuclear Information System (INIS)

    Leroy, Jacques; Cathelineau, Michel

    1982-01-01

    Several generations of white micas have been recognised in four two mica granite massifs which are associated with uranium deposits in the Hercynian chain. These different generations correspond to distinct geological phenomena belonging to the deuteric and hydrothermal stages of the history of these massifs. Crystalchemical studies of these micas with the aid of the electronic microprobe show that each of these phenomena corresponds a phengite of different, well defined compositions. An increase in the phengitic character and a decrease in the paragonite component are observed over time. Strong similarities exist between micas of the same generation belonging to different granite massifs. The study of the evolution of the earliest deuteric micas during later hydrothermal phenomena, mica episyenitisation and deposition of pitchblende, has shown two opposed trends. In the case of mica episyenitisation, the micas tend to reequilibrate, while in the case of pitchblende deposition and the vein stage in general, the micas preserve their primary character [fr

  6. Electron Thermal Capacity in Plasma Generated at Cavitation Bubble Collapse in D-acetone

    CERN Document Server

    Kostenko, B F

    2004-01-01

    The latest experimental data on nuclear reaction product registration at cavitation bubble collapse in deuterated acetone (C$_3$D$_6$O) still argue in favour of existence of a new possibility to realize the thermonuclear synthesis. Theoretical description based on numerical solution of simultaneous conservation equations for gaseous and liquid phases also confirms this possibility, although it requires further more precise definitions. In particular, description of electron degrees of freedom in very dense nonequilibrium plasma generated at the final stage of bubble collapse needs specification. In the present paper, calculations of electron thermal capacity in the deuterated acetone multiple ionization region at electron temperatures $T_e \\simeq 10^4 $ K and above and compression range $\\rho/\\rho_0 \\simeq 1 \\div 100$ have been fulfilled on the basis of direct numerical solution of equation for chemical potential.

  7. Field-induced phase transitions in antiferromagnetic systems

    International Nuclear Information System (INIS)

    Smeets, J.P.M.

    1984-05-01

    Neutron scattering experiments and magnetization measurements are carried out on cobalt bromide hexahydrate, of which 48% of the water molecules are replaced by deuterium oxide molecules. Results were compared with data obtained from non-deuterated cobalt bromide hexahydrate. Neutron scattering experiments showed the importance of the deuterium fraction. Interplay exists between the crystallographic system and the magnetic system, which is influenced by changing the deuterium fraction. Neutron scattering and magnetization experiments on partially deuterated RbFeCl 3 .2H 2 O and CsFeCl 3 .2H 2 O were performed to study the magnetic phase transitions in these quasi one-dimensional Ising compounds. The observed behaviour in the various phases can be described by the nucleation theory of chain reversals. (Auth.)

  8. An Experimental and Theoretical Study on the Kinetic Isotope Effect of C2H6 and C2D6 Reaction with OH

    KAUST Repository

    Khaled, Fathi

    2015-10-30

    We report experimental and theoretical results for the deuterated kinetic isotope effect (DKIE) of the reaction of OH with ethane (C2H6) and deuterated ethane (C2D6). The reactions were investigated behind reflected shock waves over 800–1350 K by monitoring OH radicals near 306.69 nm using laser absorption. In addition, high level CCSD(T)/cc-pV(T,Q)Z//MP2/cc-pVTZ quantum chemical and statistical rate theory calculations were performed which agreed very well with the experimental findings. The results reported herein provide the first experimental evidence that DKIE for alkanes asymptotes to a value of 1.4 at high temperatures.

  9. Laser induced sonofusion: A new road toward thermonuclear reactions

    Directory of Open Access Journals (Sweden)

    Rasoul Sadighi-Bonabi

    2016-03-01

    Full Text Available The Possibility of the laser assisted sonofusion is studied via single bubble sonoluminescence (SBSL in Deuterated acetone (C3D6O using quasi-adiabatic and hydro-chemical simulations at the ambient temperatures of 0 and −28.5 °C. The interior temperature of the produced bubbles in Deuterated acetone is 1.6 × 106 K in hydro-chemical model and it is reached up to 1.9 × 106 K in the laser induced SBSL bubbles. Under these circumstances, temperature up to 107 K can be produced in the center of the bubble in which the thermonuclear D-D fusion reactions are promising under the controlled conditions.

  10. Results from MARBLE DT Experiments on the National Ignition Facility: Implosion of Foam-Filled Capsules for Studying Thermonuclear Burn in the Presence of Heterogeneous Mix

    Science.gov (United States)

    Murphy, T. J.; Douglas, M. R.; Cardenas, T.; Cooley, J. H.; Gunderson, M. A.; Haines, B. M.; Hamilton, C. E.; Kim, Y.; Lee, M. N.; Oertel, J. A.; Olson, R. E.; Randolph, R. B.; Shah, R. C.; Smidt, J. M.

    2017-10-01

    The MARBLE campaign on NIF investigates the effect of heterogeneous mix on thermonuclear burn for comparison to a probability distribution function (PDF) burn model. MARBLE utilizes plastic capsules filled with deuterated plastic foam and tritium gas. The ratio of DT to DD neutron yield is indicative of the degree to which the foam and the gas atomically mix. Platform development experiments have been performed to understand the behavior of the foam and of the gas separately using two types of capsule. The first experiments using deuterated foam and tritium gas have been performed. Results of these experiments, and the implications for our understanding of thermonuclear burn in heterogeneously mixed separated reactant experiments will be discussed. This work is supported by US DOE/NNSA, performed at LANL, operated by LANS LLC under contract DE-AC52-06NA25396.

  11. An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes.

    Science.gov (United States)

    Kita, Akiko; Morimoto, Yukio

    2016-02-01

    A method of hydrogen/deuterium (H/D) exchange with an unfolding-refolding process has been applied to hen egg-white lysozyme (HWL), and accurate evaluation of its deuteration was carried out by time-of-flight mass spectroscopy. Neutron crystallography requires a suitable crystal with enough deuterium exchanged in the protein to decrease incoherent scattering from hydrogens. It is very expensive to prepare a fully deuterated protein, and therefore a simple H/D exchange technique is desirable for this purpose. Acid or base addition to protein solutions with heating effectively increased the number of deuterium up to more than 20 % of that of all hydrogen atoms, and refolded structures were determined by X-ray structure analysis at 1.8 Å resolution. Refolded HWL had increased deuterium content in its protein core and its native structure, determined at atomic resolution, was fully preserved.

  12. Water involvement in the mechanisms of retina electrical activity

    International Nuclear Information System (INIS)

    Chirieri-Kovacs, E.; Vasilescu, V.

    1982-01-01

    Retina is an excitable system containing approximately 90% water. As we found that deuteration selectively changes amplitudes and latencies of retina biopotentials, specifically the ON and OFF responses, we used it to probe the role of water in those processes. A study of the retina deuteration kinetics was simultaneously performed. This revealed the existence of at least two retinal water compartments. The data suggested a third compartment also, with a lower motional ''degree of freedom,'' existing where H 2 O-D 2 O exchange becomes important only after saturation by D 2 O of the first two compartments. Correlation of the electrophysiological effects of D 2 O with the kinetic data suggests that the ON response is related to the first water compartment and the OFF response to the third. The results point to independence on the ON and OFF response mechanisms and, very probably, to their different morphological origins

  13. Deuterium adsorption on (and desorption from) SiC(0001)-(3 x 3), (R3 x R3)R30 , (6R3 x 6R3)R30 and quasi-free-standing graphene obtained by hydrogen intercalation

    Energy Technology Data Exchange (ETDEWEB)

    Bocquet, F.C. [Peter Gruenberg Institut (PGI-3), Forschungszentrum Juelich (Germany); Bisson, R.; Layet, J.M.; Angot, T. [Aix-Marseille Universite, PIIM, CNRS, UMR 7345, Marseille (France); Themlin, J.M. [Aix-Marseille Universite, IM2NP, 13397, Marseille (France); CNRS, UMR 7334, Marseille-Toulon (France)

    2014-07-01

    I present a comparative High-Resolution Electron Energy-Loss Spectroscopy (HREELS) study on the interaction of atomic hydrogen and deuterium with various reconstructions of SiC(0001). We show that deuterium passivation of the (3 x 3) is only reversible when exposed to atomic deuterium at a surface temperature of 700 K since tri- and dideuterides, necessary precursors for silicon etching, are not stable at this temperature. On the other hand, we show that the deuteration of the (R3 x R3)R30 is always reversible because precursors to silicon etching are scarce on the surface. Further, the comparison of the deuterium binding in the intercalation layer of quasi-free-standing graphene with the deuterated (R3 x R3)R30 surface provides some indication on the bonding structure at the substrate intercalation layer.

  14. Study on the influence of isotope exchange of hydrogen with deuterium on the vibrational spectrum of lysozyme by inelastic neutron scattering

    International Nuclear Information System (INIS)

    Svanidze, A. V.; Lushnikov, S. G.; Sashin, I. L.; Gvasaliya, S. N.

    2007-01-01

    The influence of isotope exchange of hydrogen with deuterium on the lysozyme dynamics was studied by incoherent inelastic neutron scattering. The generalized vibrational densities of states G(ω) were constructed from experimental results for protonated and deuterated protein samples at 200, 280, and 311 K. The major isotope effect was observed in G(ω) in the frequency region higher than 100 cm -1 . At all temperatures, both the Debye mode and the region of G(ω), whose spectral dimension corresponds to the fracton mode, are observed in the low-frequency region of the densities of states of both protonated and deuterated lysozyme. The influence of the hydrogen isotope exchange on the low-frequency region of G(ω) is insignificant

  15. Residual orientation in injection micro-molded samples

    International Nuclear Information System (INIS)

    Healy, John; Edward, Graham H.; Knott, Robert B.

    2006-01-01

    The orientation of polymer chains after injection molding is usually studied using techniques that measure the average orientation of molecular segments. Small-angle neutron scattering (SANS) is a technique for measuring the overall chain orientation and is very sensitive to molecular anisotropy. In this study, a blend of a commercial general-purpose polystyrene and deuterated polystyrene was injection micro-molded under a variety of molding conditions. SANS was then used to measure the residual orientation of the deuterated chains. As expected, the molecular orientation decreased with increasing mold temperature and increased with decreasing mold thickness. However, for these micro-moldings, the residual orientation decreased with increasing injection velocity. The measured orientation also appears to be Q-dependent indicating that the average residual orientation of short-chain segments may not necessarily reflect the overall chain conformation

  16. Water-Protein Hydrogen Exchange in the Micro-Crystalline Protein Crh as Observed by Solid State NMR Spectroscopy

    International Nuclear Information System (INIS)

    Boeckmann, Anja; Juy, Michel; Bettler, Emmanuel; Emsley, Lyndon; Galinier, Anne; Penin, Francois; Lesage, Anne

    2005-01-01

    We report site-resolved observation of hydrogen exchange in the micro-crystalline protein Crh. Our approach is based on the use of proton T 2 ' -selective 1 H- 13 C- 13 C correlation spectra for site-specific assignments of carbons nearby labile protein protons. We compare the proton T 2 ' selective scheme to frequency selective water observation in deuterated proteins, and discuss the impacts of deuteration on 13 C linewidths in Crh. We observe that in micro-crystalline proteins, solvent accessible hydroxyl and amino protons show comparable exchange rates with water protons as for proteins in solution, and that structural constraints, such as hydrogen bonding or solvent accessibility, more significantly reduce exchange rates

  17. HPLC isotope effects and macrocycles: the case of Echinocandin B

    International Nuclear Information System (INIS)

    Jones, A.N.; Simpson, R.E.; Jenkins, H.J.

    1992-01-01

    Echinocandin B was catalytically reduced with hydrogen, deuterium, or tritium. HPLC analysis of the products showed that the labeled analogs exhibited a significant isotope effect relative to the unlabeled parent, with the elution order tritiated < deuterated < hydrogenated. Mass spectral data and specific activity measurements indicated label incorporation exceeded saturation of the double bonds. Proton nmr of the deuterated compound indicated labeling was confined to the aliphatic side chain. A model compound, anilonosteareamide, prepared from the linoleic precursor by reduction with hydrogen or deuterium, incorporated the label only in the aliphatic chain, and also exhibited an isotope effect. This helped confirm that label incorporation in only the fatty acid portion of tetrahydroechinocandin B was sufficient to cause the observed isotope effect. (Author)

  18. Influence of H/D isotope substitution on physicochemical properties of aqueous solutions of urea and thiourea

    International Nuclear Information System (INIS)

    Jelinska-Kazimierczuk, M.; Szydlowski, J.

    2001-01-01

    The influence of the H/D isotope substitution on excess volumes, partial molar volumes, viscosity and ultrasound speed in aqueous solutions of urea and thiourea are studied at 20 o C. The excess volume of the solutions studied is relatively small - however, it is negative in urea and positive in thiourea solutions. On the other hand, the deuteration affects the excess volume in both solutions in the same way: deuterated systems show smaller deviation from additivity than regular ones. The speed of sound in the systems studied increases monotonously with concentration , but its isotope effect decreases as the concentration increases. The curves of viscosity are monotonous too, but isotope effect of kinematic viscosity is practically the same in the whole concentration range studied. The present results for urea and thiourea aqueous solutions are compared with those previously obtained for amide- water systems. (author)

  19. Observations of interstellar HNC, DNC, and HN13C: Temperature effects on deuterium fractionation

    International Nuclear Information System (INIS)

    Snell, R.L.; Wootten, A.

    1979-01-01

    We report here an extensive search for DNC emission in 18 clouds with HNC emission. The DNC molecule was found in 13 of these clouds. The HN 13 C molecule was also sought in those clouds where saturation was thought to be important. We have determined the [DNC]/[HNC] ratios incorporating the effects of saturation and radiation trapping. The extent of deuteration found in HNC is larger than for any other molecule yet observed. The [DNC]/[HNC] ratios are also found to strongly anticorrelate with the kinetic temperature of the cloud, suggesting that exchange reactions between HD and a molecular ion are ultimately responsible for the deuteration. The value of ΔE/k for the exchange reaction that produces DNC is determined to be 240 +- 60 K. Low values for the abundance of electrons and certain neutral species are similar to those determined from [DCO + ]/[HCO + ] and [N 2 D + ]/[N 2 H +

  20. Characterization and development of diamond-like carbon coatings for storing ultracold neutrons

    CERN Document Server

    Grinten, M G D; Shiers, D; Baker, C A; Green, K; Harris, P G; Iaydjiev, P S; Ivanov, S N; Geltenbort, P

    1999-01-01

    In order to determine the suitability of diamond-like carbon (DLC) as a material for storing ultracold neutrons to use in neutron electric-dipole moment (EDM) experiments, a number of tests on DLC coatings have been performed. Thin DLC layers deposited on quartz and aluminium substrates by chemical vapour deposition have been characterised by neutron transmission, neutron reflectometry, electron microscopy and neutron and mercury storage and depolarisation lifetime measurements. Two types of DLC have been compared; DLC made by chemical vapour deposition from natural methane and DLC made by chemical vapour deposition from deuterated methane. With these samples we determined the density, hydrogen concentration and Fermi potential of the coatings. DLC coatings made from deuterated methane are now successfully being used in an experiment to measure the EDM of the neutron.