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Sample records for daucus carota ssp

  1. Susceptibility of wild carrot (Daucus carota ssp. carota) to Sclerotinia sclerotiorum

    DEFF Research Database (Denmark)

    Jensen, Brita Dahl; Finckh, M.R.; Munk, Lisa

    2008-01-01

    Sclerotinia soft rot, caused by Sclerotinia sclerotiorum, is a severe disease of cultivated carrots (Daucus carota ssp. sativus) in storage. It is not known whether Sclerotinia soft rot also affects wild carrots (D. carota ssp. carota), which hybridise and exchange genes, among them resistance...... genes, with the cultivated carrot. We investigated the susceptibility of wild carrots to S. sclerotiorum isolates from cultivated carrot under controlled and outdoor conditions. Inoculated roots from both wild and cultivated plants produced sclerotia and soft rot in a growth chamber test. Two isolates...... differed significantly in the ability to produce lesions and sclerotia on roots of both wild carrots and cv. Bolero. Flowering stems of wild carrots produced dry, pale lesions after inoculation with the pathogen, and above-ground plant weight was significantly reduced 4 weeks after inoculation...

  2. Foliar-applied ethephon enhances the content of anthocyanin of black carrot roots (Daucus carota ssp. sativus var. atrorubens Alef.)

    DEFF Research Database (Denmark)

    Barba Espin, Gregorio; Glied, Stephan; Crocoll, Christoph

    2017-01-01

    BACKGROUND: Black carrots (Daucus carota ssp. sativus var. atrorubens Alef.) constitute a valuable source of anthocyanins, which are used as natural red, blue and purple food colourants. Anthocyanins and phenolic compounds are specialised metabolites, accumulation of which often requires elicitors...

  3. Carrot (Daucus carota L . ssp. sativus (Hoffm. Arcang. as source of antioxidants

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    Judita BYSTRICKÁ

    2015-11-01

    Full Text Available Carrot (Daucus carota L. s sp. sativus (Hoffm. Arcang. is a significant source of vitamins (A, B, C and beta carotene. Further it contains vitamins B, C, E, H, folic acid and pantothenic acid. Carrot is an important source of trace elements (K, Na, Ca, Mg, P, S, Mn, Fe, Cu and Zn. Consumption of carrot improves eyesight, lowers cholesterol and improves digestion. In this work we evaluated and compared content of total polyphenols, ß-caroteneand antioxidant activity in five varieties of carrot (’Jitka’, Kardila’, Katlen , Rubína’ and Koloseum Samples of carrot were collected at full maturity stages from area of Bardejov. Samples of fresh carrot were homogenized (25 g in 50 ml 80 % ethanol and analysed after sixteen hours. The content of the total polyphenols was determined by using the Folin-Ciocalteu reagent (FCR. The content of ß-carotene was determined spectrophotometricaly at 450 nm. Antioxidant activity was measured using a compound DPPH (2.2-diphenyl-1-picrylhydrazyl at 515.6 nm using spectrophotometer. Total polyphenols content in samples ranged from 81.25 ± 13.11 mg/kg to 113.69 ± 11.57 mg/kg and content of ß-carotenes ranged from 24.58 ± 2.38 mg/kg to 124.28 ± 3.54 mg/kg. We also evaluated and compared the antioxidant activity in selected varieties of ca rrot, which varied from 6.88 ± 0.92 % to 9.83 ± 0.62 %. Statistically si gnificant the highest value of total polyphenols was recorded in variety of Koloseum (113.69 ± 11.57 mg/kg. This variety is also character ized by the highest content of ß- carotene (124.28 ± 3.54 mg/kg as well as the highest value of antioxidant activity (9.83 ± 0.62 %.

  4. Hot air convective dehydration characteristics of Daucus carota var. Nantes

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    Raees-ul Haq

    2015-12-01

    Full Text Available The present work focuses on experimental and theoretical study of air dehydration kinetics of Daucus carota var. Nantes in laboratory scale drying chamber. Steam blanching as a pretreatment was applied prior to dehydration of shreds and the results indicated a gradual decrease in drying time from 2.9 to 5.5% in temperature range of 50–70°C, for steam blanched samples in comparison to untreated carrots. Four different mathematical drying models (Newton, Page, Modified Page and Henderson and Pabis were evaluated for goodness of fit by comparing their respective R2, χ2, and RMSE parameters. Comparison of the statistical parameters led to conclusion that Page model showed a better quality of fit and presents dehydration characteristics in better way to obtain drying curves than any other model.

  5. New Claims for Wild Carrot (Daucus carota subsp. carota Essential Oil

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    Jorge M. Alves-Silva

    2016-01-01

    Full Text Available The essential oil of Daucus carota subsp. carota from Portugal, with high amounts of geranyl acetate (29.0%, α-pinene (27.2%, and 11αH-himachal-4-en-1β-ol (9.2%, was assessed for its biological potential. The antimicrobial activity was evaluated against several Gram-positive and Gram-negative bacteria, yeasts, dermatophytes, and Aspergillus strains. The minimal inhibitory concentration (MIC and minimal lethal concentration (MLC were evaluated showing a significant activity towards Gram-positive bacteria (MIC = 0.32–0.64 μL/mL, Cryptococcus neoformans (0.16 μL/mL, and dermatophytes (0.32–0.64 μL/mL. The inhibition of the germ tube formation and the effect of the oil on Candida albicans biofilms were also unveiled. The oil inhibited more than 50% of filamentation at concentrations as low as 0.04 μL/mL (MIC/128 and decreased both biofilm mass and cell viability. The antioxidant capacity of the oil, as assessed by two in chemico methods, was not relevant. Still, it seems to exhibit some anti-inflammatory potential by decreasing nitric oxide production around 20% in LPS-stimulated macrophages, without decreasing macrophages viability. Moreover, the oils safety profile was assessed on keratinocytes, alveolar epithelial cells, macrophages, and hepatocytes. Overall, the oil demonstrated a safety profile at concentrations below 0.64 μL/mL. The present work highlights the bioactive potential of D. carota subsp. carota suggesting its industrial exploitation.

  6. Alternative oxidase involvement in Daucus carota somatic embryogenesis.

    Science.gov (United States)

    Frederico, António Miguel; Campos, Maria Doroteia; Cardoso, Hélia Guerra; Imani, Jafargholi; Arnholdt-Schmitt, Birgit

    2009-12-01

    Plant alternative oxidase (AOX) is a mitochondrial inner membrane enzyme involved in alternative respiration. The critical importance of the enzyme during acclimation upon stress of plant cells is not fully understood and is still an issue of intensive research and discussion. Recently, a role of AOX was suggested for the ability of plant cells to change easily its fate upon stress. In order to get new insights about AOX involvement in cell reprogramming, quantitative real-time polymerase chain reaction (PCR) and inhibitor studies were performed during cell redifferentiation and developmental stages of Daucus carota L. somatic embryogenesis. Transcript level analysis shows that D. carota AOX genes (DcAOX1a and DcAOX2a) are differentially expressed during somatic embryogenesis. DcAOX1a shows lower expression levels, being mainly down-regulated, whereas DcAOX2a presented a large up-regulation during initiation of the realization phase of somatic embryogenesis. However, when globular embryos start to develop, both genes are down-regulated, being this state transient for DcAOX2a. In addition, parallel studies were performed using salicylhydroxamic acid (SHAM) in order to inhibit AOX activity during the realization phase of somatic embryogenesis. Embryogenic cells growing in the presence of the inhibitor were unable to develop embryogenic structures and its growth rate was diminished. This effect was reversible and concentration dependent. The results obtained contribute to the hypothesis that AOX activity supports metabolic reorganization as an essential part of cell reprogramming and, thus, enables restructuring and de novo cell differentiation.

  7. Imaging of polarity during zygotic and somatic embryogenesis of carrot (Daucus carota L.).

    NARCIS (Netherlands)

    Timmers, A.C.J.

    1993-01-01

    In this thesis a study of the regulation of coordinated growth and the development of polarity during embryogenesis of carrot, Daucus carota L., is described. To this end, several microscopical techniques were used, such as light microscopy, fluorescence microscopy, confocal scanning laser microscop

  8. The next generation of carotenoid studies in carrot (Daucus carota L.)

    Science.gov (United States)

    Orange carrot (Daucus carota L.) is one of the richest sources of naturally occurring ß-carotene while red and yellow carrot varieties contain large quantities of lycopene and lutein. The human body utilizes carotenoids, particularly ß-carotene (provitamin A) as a precursor for the production of ret...

  9. Components Essential Oils in Different Parts of Daucus carota L. var. sativa Hoffm

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The components of the essential oils obtained from different parts of Daucus carota L. var. sativa Hoffm were analyzed. The percentages of the essential oils extracted are 0. 27% (mL/100 g material) for the flowers, 0. 07% for the stems and leaves and 0. 01% for the roots. Fifty-four, Sixty-six and Thirty-three compounds were, respectively,separated and identified from the flowers, the stems and leaves and the roots, among which unsaturated alkene compounds are thirty-nine, thirty-nine and twenty-one, respectively, accounting in turn for up to 90. 21%, 90. 49% and 72. 65% of the total essential oils. Because alkene compounds have double bonds that are easily oxidized, it can be inferred that the components of the essential oils in the different parts of Daucus carota L. var. sativa Hoffm should show an activity of the anti-formation of free radicals to some extent.

  10. Carotamine, a Unique Aromatic Amide from Daucus Carota L. Var Biossieri (Apiaceae

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    Mohamed M. El-Azizi

    2002-06-01

    Full Text Available The unique aromatic peptide 4-(p-aminobenzoylamino-2-aminobenzoic acid, carotamine, together with 2,4-diaminobenzoic acid, isolated for the first time from a plant source, were identified from the aqueous alcoholic extract of the aerial parts of Daucus carota L. var. boissieri (Apiaceae. The structures were determined through conventional methods of analysis and confirmed by LC-ESI/MS and NMR spectral analysis.

  11. Tween® 20-Enhanced Bioreduction of Acetophenones Promoted by Daucus carota Root

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    Monique Rodrigues da Costa

    2017-01-01

    Full Text Available The effect of surfactants on the bioreduction of acetophenones mediated by carrot (Daucus carota root was investigated. Among the tested surfactants, Tween® 20 slightly improved the conversion. The amount of surfactant was optimised, and the presented methodology was applied to other substituted acetophenones, which led to the preparation of their respective optically enriched 1-phenylethanols with high conversion levels and high enantioselectivities.

  12. Gastroprotective Effect of Carrot (Daucus carota L.) Juice in Rat Models

    OpenAIRE

    Wong Hui Jiin; Eva M. Hidayat; Kiki A. Lukman

    2014-01-01

    Background: Gastritis has become one of the very common gastrointestinal tract disorders in clinical practice. One of the factors causing gastritis is the prolonged intake of nonsteroidal anti-inflammatory drugs (NSAIDs) which is commonly adopted by people suffering pain. The NSAIDs such as aspirin cause loss of mucosal integrity resulting in gastric mucosa inflamation. Carrot (Daucus carota L.) has long been used as a traditional medicine for various ailments. The presence of flavonoids and ...

  13. Daucus carota Pentane-Based Fractions Suppress Proliferation and Induce Apoptosis in Human Colon Adenocarcinoma HT-29 Cells by Inhibiting the MAPK and PI3K Pathways.

    Science.gov (United States)

    Shebaby, Wassim N; Bodman-Smith, K B; Mansour, Anthony; Mroueh, Mohamad; Taleb, Robin I; El-Sibai, Mirvat; Daher, Costantine F

    2015-07-01

    Daucus carota L. ssp. carota (Apiacea, wild carrot, Queen Anne's lace) has been used in folk medicine throughout the world and recently was shown to possess anticancer and antioxidant activities. This study aims to determine the anticancer activity of the pentane fraction (F1) and the 1:1 pentane:diethyl ether fraction (F2) of the Daucus Carota oil extract (DCOE) against human colon adenocarcinoma cell lines (HT-29 and Caco-2). Treatment of cells with various concentrations of F1 or F2 fractions produced a dose-dependent inhibition of cell proliferation. Flow cytometric analysis indicated that both fractions induced sub-G1 phase accumulation and increased apoptotic cell death. Western blot revealed the activation of caspase-3, PARP cleavage, and a considerable increase in Bax and p53 levels, and a decrease in Bcl-2 level. Treatment of HT-29 cells with either fraction markedly decreased the levels of both phosphorylated Erk and Akt. Furthermore, the combined treatment of F1 or F2 with wortmannin showed no added inhibition of cell survival suggesting an effect of F1 or F2 through the phosphatidyl inositol 3-kinase (PI3K) pathway. This study proposes that DCOE fractions (F1 and F2) inhibit cell proliferation by inducing cell cycle arrest and apoptosis in HT-29 cells through the suppression of mitogen-activated protein kinase (MAPK)/Erk and PI3K/Akt pathways.

  14. Daucus carota pentane-based fractions arrest the cell cycle and increase apoptosis in MDA-MB-231 breast cancer cells.

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    Shebaby, Wassim N; Mroueh, Mohammad; Bodman-Smith, Kikki; Mansour, Anthony; Taleb, Robin I; Daher, Costantine F; El-Sibai, Mirvat

    2014-10-10

    Daucus carota L.ssp.carota (wild carrot), an herb used in folk medicine worldwide, was recently demonstrated to exhibit anticancer activity. In this study we examined the anticancer effect of Daucus carota oil extract (DCOE) fractions on the human breast adenocarcinoma cell lines MDA-MB-231 and MCF-7 and clarified the mechanism of action. Using the WST assay, the pentane fraction (F1) and 1:1 pentane:diethyl ether fraction (F2) were shown to possess the highest cytotoxicity against both cell lines. Flow cytometric analysis revealed that both fractions induced the accumulation of cells in the sub-G1 phase, increase in apoptotic cell death and chromatin condensation. The increase in apoptosis in response to treatment was also apparent in the increase in BAX and the decrease in Bcl-2 levels as well as the proteolytic cleavage of both caspase-3 and PARP as revealed by Western blot. Furthermore, treatment of MDA-MB-231 cells with either fraction significantly reduced the level of phosphorylated Erk but did not show any effect on phosphorylated Akt. The combined treatment with a potent PI3K inhibitor (wortmannin) and F1 or F2 fraction had a synergistic inhibitory effect on cell survival which shows that these two drugs work on different pathways. These results suggest that the pentane-based fractions of DCOE possess potential anti-cancer activity that is mainly mediated through the Erk pathway.

  15. Metabolic cycles in primary metabolism of cell suspensions of Daucus carota L. analysed by C-NMR

    NARCIS (Netherlands)

    Krook, J.

    1999-01-01

    In the work described in this thesis, uptake and conversion of sugar by cells of batch-grown suspensions of Daucus carota L. were studied. Invasive techniques (measurements of enzyme activities and sugar and starch levels) and non-invasive techniques ( 13C-NMR) were used to

  16. Structure determination of bisacetylenic oxylipins in carrots (Daucus carota L.) and enantioselective synthesis of falcarindiol.

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    Schmiech, Ludger; Alayrac, Carole; Witulski, Bernhard; Hofmann, Thomas

    2009-11-25

    Although bisacetylenic oxylipins have been demonstrated to exhibit diverse biological activities, the chemical structures of many representatives of this class of phytochemicals still remain elusive. As carrots play an important role in our daily diet and are known as a source of bisacetylenes, an extract made from Daucus carota L. was screened for bisacetylenic oxylipins, and, after isolation, their structures were determined by means of LC-MS and 1D/2D NMR spectroscopy. Besides the previously reported falcarinol, falcarindiol, and falcarindiol 3-acetate, nine additional bisacetylenes were identified, among which six derivatives are reported for the first time in literature and three compounds were previously not identified in carrots. To determine the absolute stereochemistry of falcarindiol in carrots, the (3R,8R)-, (3R,8S)-, (3S,8R)-, and (3S,8S)-stereoisomers of falcarindiol were synthesized according to a novel 10-step total synthesis involving a Cadiot-Chodkiewicz cross-coupling reaction of (S)- and (R)-trimethylsilanyl-4-dodecen-1-yn-3-ol and (R)- and (S)-5-bromo-1-penten-4-yn-3-ol, respectively. Comparative chiral HPLC analysis of the synthetic stereoisomers with the isolated phytochemical led to the unequivocal assignment of the (Z)-(3R,8S)-configuration for falcarindiol in carrot extracts from Daucus carota L.

  17. In vivo antioxidant and hepatoprotective activity of methanolic extracts of Daucus carota seeds in experimental animals

    Institute of Scientific and Technical Information of China (English)

    Kamlesh Singh; Nisha Singh; Anish Chandy; Ashish Manigauha

    2012-01-01

    Objective: To assess the In vivo antioxidFant and hepatoprotective activity of methanolic extract of Daucus carota (D. carota) seeds in experimental animals. Methods: Methanolic extracts of D. carota seeds is used for hepatoprotection assessment. Oxidative stress were induced in rats by thioacetamide 100 mg/kg s.c, in four groups of rats (two test, standard and toxic control). Two test groups received D. carota seeds extract (DCSE) at doses of 200 mg/kg and 400 mg/kg. Standard group received silymarin (25 mg/kg) and toxic control received only thioacetamide. Control group received only vehicle. On the 8th day animals were sacrificed and liver enzyme like serum glutamic pyruvic transaminase (SGPT), serum glutamic-oxaloacetic transaminase (SGOT) and alkaline phosphatase (ALP) were estimated in blood serum and antioxidant enzyme like superoxide dismutase (SOD), catalase (CAT), glutathione reductase (GRD), glutathione peroxidase (GPX), glutathione-S-transferase (GST) and lipid peroxidation (LPO) were estimated in liver homogenate. Results: A significant decrease in SGPT, SGOT and ALP levels was observed in all drug treated groups as compared to thioacetamide group (P < 0.001) and in case of antioxidant enzyme a significant (P < 0.001) increase in SOD, CAT, GRD, GPX and GST was observed in all drug treated groups as compared with thioacetamide group. But in case of LPO a significant (P< 0.001) reduction was observed as compared to toxic control group. Conclusions: DCSE has contributed to the reduction of oxidative stress and the protection of liver in experimental rats.

  18. Insecticidal effect of carrot (Daucus carota and lovage (Levisticum officinale (Apiaceae extracts against Tribolium confusum Jacquelin du Duval, 1868 (Coleoptera, Tenebrionidae

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    Eva Hrudová

    2006-01-01

    Full Text Available Extracts from Daucus carota and Levisticum officinale in different concentrations were tested for insec- ticidal effect against Tribolium confusum (Coleoptera, Tenebrionidae. The efficacy of treatment was evaluated after 24, 48 and 72 h. The required data were statistically analysed using the Henderson-Tilton method. The Daucus carota IPM extract in a dose of 1ml, D. carota IPM extract diluted with water in a ratio of 1:1 (dose 1 ml and Levisticum officinale extract in a dose of 2 ml were highly efficient.

  19. Metabolomics of Daucus carota cultured cell lines under stressing conditions reveals interactions between phenolic compounds.

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    Ceoldo, Stefania; Toffali, Ketti; Mantovani, Silvia; Baldan, Greta; Levi, Marisa; Guzzo, Flavia

    2009-04-01

    A metabolomic approach followed by principal components and partial least square analysis was used for investigating the effect of environmental factors on two Daucus carota L. cv. Flakkese cell lines (R3M and R4G), selected for their ability to produce anthocyanins in the light and the dark, respectively. A positive correlation between total anthocyanin, hydroxycinnamic and hydroxybenzoic acid accumulation was found in both lines. Furthermore, the experimental design and the combination of biochemical and statistical analyses allowed us to unravel complex relationships between environmental factors and phenylpropanoid composition. Among these, the induction by mechanical stress of overproduction of all anthocyanins, hydroxycinnamic and hydroxybenzoic acids except sinapic acid derivatives, whose accumulation was inhibited.

  20. Bioactive C₁₇-Polyacetylenes in Carrots (Daucus carota L.): Current Knowledge and Future Perspectives.

    Science.gov (United States)

    Dawid, Corinna; Dunemann, Frank; Schwab, Wilfried; Nothnagel, Thomas; Hofmann, Thomas

    2015-10-28

    C17-polyacetylenes (PAs) are a prominent group of oxylipins and are primarily produced by plants of the families Apiaceae, Araliaceae, and Asteraceae, respectively. Recent studies on the biological activity of polyacetylenes have indicated their potential to improve human health due to anticancer, antifungal, antibacterial, anti-inflammatory, and serotogenic effects. These findings suggest targeting vegetables with elevated levels of bisacetylenic oxylipins, such as falcarinol, by breeding studies. Due to the abundant availability, high diversity of cultivars, worldwide experience, and high agricultural yields, in particular, carrot (Daucus carota L.) genotypes are a very promising target vegetable. This paper provides a review on falcarinol-type C17-polyacetylenes in carrots and a perspective on their potential as a future contributor to improving human health and well-being.

  1. Effects of excess and deficient boron and niacin on the ultrastructure of root cells in Daucus carota cv. Nantes

    OpenAIRE

    DEMİRAY, Hatice; DEREBOYLU, Aylin EŞİZ

    2013-01-01

    The effects of excess and deficient boron and niacin on vascular tissues of carrot roots (Daucus carota L. cv. Nantes) were investigated in plants grown in medium both rich and poor in boron and also boron with niacin. Five media were investigated: control (MS medium), boron-deficient MS medium, MS medium with excess boron, niacin-deficient MS medium, MS medium with niacin excess, and MS medium with excess boron and niacin. In anatomical cross sections, lignification was seen in middle lamell...

  2. Pharmacological evaluation of ethanolic extract of Daucus carota Linn root formulated cream on wound healing using excision and incision wound model

    Institute of Scientific and Technical Information of China (English)

    Mithun Vishwanath K Patil; Amit D Kandhare; Sucheta D Bhise

    2012-01-01

    Objective: Daucus carota L. (Carrot) (Apiaceae) is used in the traditional medicine for the treatment of variety of ailments. The aim of present investigation was to formulate and evaluate wound healing activity of ethanolic extract of Daucus carota L. root on excision wound model and incision wound model. Methods: The soft paraffin based cream containing 1%, 2% and 4% w/w of ethanolic extract of Daucus carota L. (EEDC) root was formulated and evaluated for pharmaceutical parameters such as rheological properties, pH, skin irritation and external characters. Excision wounds sized 300 mm2 and 2 mm depth were used for the study of rate of contraction of wound and epithelization at different time intervals. Incision wounds six centimeter long and two linear-paravertebral incisions were used for the study of tensile strength, total protein and hydroxyproline content measured on 10th day old incision wound. Results: Ethanolic extract of Daucus carota L. root cream formulation when applied topically did not show any sign and symptoms of skin irritation. Animals treated with topical EEDC cream formulation (1%, 2%and 4% w/w) showed significance decrease in wound area, epithelization period and scar width whereas rate of wound contraction significantly increased (P<0.01, P<0.001 and P<0.001 resp.) as compared to control group animals in excision wound model. In incision wound model there was significant increase (P<0.01 and P<0.001) in tensile strength, hydroxyproline content and protein content of animals treated with topical EEDC cream formulation (2% and 4% w/w, respectively). Conclusions: Wound-healing property of ethanolic extract of Daucus carota L. root may be attributed to the various phytoconstituents like flavonoids and phenolic derivatives present in the root and the quicker process of wound healing could be a function of either its antioxidant or antimicrobial potential. The present findings provide scientific evidence to the ethanomedicinal properties of Daucus

  3. Gastroprotective Effect of Carrot (Daucus carota L. Juice in Rat Models

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    Wong Hui Jiin

    2014-02-01

    Full Text Available Background: Gastritis has become one of the very common gastrointestinal tract disorders in clinical practice. One of the factors causing gastritis is the prolonged intake of nonsteroidal anti-inflammatory drugs (NSAIDs which is commonly adopted by people suffering pain. The NSAIDs such as aspirin cause loss of mucosal integrity resulting in gastric mucosa inflamation. Carrot (Daucus carota L. has long been used as a traditional medicine for various ailments. The presence of flavonoids and carotenoids in carrot is associated with gastroprotective effect. Methods: The present study was undertaken to determine the gastroprotective effect of 4.08 g carrot juice administered by feeding tube on the hydrochloric acid (HCL concentration in the stomach in aspirin-induced Wistar-strain rats. This was a laboratory experimental study performed at the Pharmacology Laboratory Faculty of Medicine Universitas Padjadjaran, Bandung Indonesia in October 2012. The parameter used HCL Concentration determined by titration method. Results: The result of carrot juice consumption together with aspirin shows a statistically significant reduction in HCL concentration in the stomach (p<0.05. The result was also significant when compared with another medication, Misoprostol. Conclusion: Carrot juice extract possesses gastroprotective effect when consumed with aspirin and thus support the use of carrot as an alternative treatment. [AMJ.2014;1(1:35–9

  4. Daucus carota Pentane/Diethyl Ether Fraction Inhibits Motility and Reduces Invasion of Cancer Cells.

    Science.gov (United States)

    Zgheib, Perla; Daher, Costantine F; Mroueh, Mohamad; Nasrallah, Anita; Taleb, Robin I; El-Sibai, Mirvat

    2014-01-01

    Daucus carota (DC) is a herb used in folklore medicine in Lebanon to treat numerous diseases including cancer. Recent studies in our laboratory on DC oil and its fractions revealed potent anticancer activities in vitro and in vivo. The present study aims to investigate the effect of the most potent DC fraction, pentane/diethyl ether (50:50), on lung, skin, breast and glioblastoma cancer cell motility and invasion. Upon treatment, a pronounced decrease in cancer cell motility was observed in the 4 cell lines. The treatment also led to a decrease in cancer cell invasion and an increased cell adhesion. Additionally, the DC fraction caused a decrease in the activation of the ρ-GTPases Rac and CDC42, a finding that may partially explain the treatment-induced decrease in cell motility. The current study demonstrates a crucial effect of the DC pentane/diethyl ether fraction on cancer cell motility and metastasis, making it a potential candidate for cancer therapy specifically targeting cancer motility and metastasis. © 2015 S. Karger AG, Basel.

  5. Biosynthesis, partial purification and characterization of invertase through carrot (Daucus carota l. peels

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    hina ashraf

    2015-04-01

    Full Text Available The present study was investigated on the production of Invertaseunder solid-state fermentation (SSF through Aspergillus species, byusing Carrot peels (Daucus carota L. as a substrate. The highestproductivity of Invertase (7.95±0.1 U/ml was achieved by usingAspergillus niger at 90% initial moisture content with 1×106spores/ml after 72 hours of incubation period. The enzyme waspurified about 1.42-fold by ammonium sulphate precipitation. Itshowed thermal stability from 20-70oC over a pH range (5.5 to 6.5with maximum activity at pH 5.5 and 50°C. The enzyme was highlyactive towards sucrose at both concentrations viz: 0.1 M and 0.5 M,but it showed less activity towards glycerol. It was completelyinhibited by Hg2+ (1mM and slightly stimulated by Co2+ and Na+ atthe same concentration.

  6. Ginsenoside Rb1 in asymmetric somatic hybrid calli of Daucus carota with Panax quinquefolius.

    Science.gov (United States)

    Han, Lu; Zhou, Chuanen; Shi, Junying; Zhi, Daying; Xia, Guangmin

    2009-04-01

    American ginseng (Panax quinquefolius L.) is one of the most valuable herbs in the world. Its major active components are ginsenosides. In order to produce ginsenoside heterogeneously, somatic hybridization, a novel approach for genetic introgression, was employed in this study. Protoplasts derived from respective calli of carrot (Daucus carota var. sativus Hoffm.) and American ginseng (P. quinquefolius L.) were used as the fusion partners. Hybrid calli derived from single cell lines containing chromatin of American ginseng were confirmed by the analyses of isozyme, Random amplified polymorphic DNA (RAPD) and genomic in situ hybridization (GISH). High performance liquid chromatography (HPLC) results showed that the ginseng monomer Rb(1) was synthesized in seven of the hybrid calli identified as well as in the parent American ginseng calli but not in the parent carrot calli. Results indicated that hybrid introgression lines could produce ginsenoside Rb(1) and the ginsenoside Rb(1) biosynthesis pathway has been introgressed into carrot cells via somatic hybridization. From the point of biosafety view concerning the consumer acceptance, the potential predominance to produce ginsenosides with somatic hybridization other than with genetic transformation is discussed.

  7. Effects of bioactive compounds from carrots (Daucus carota L.), polyacetylenes, beta-carotene and lutein on human lymphoid leukaemia cells.

    Science.gov (United States)

    Zaini, Rana G; Brandt, Kirsten; Clench, Malcolm R; Le Maitre, Christine L

    2012-07-01

    New therapies for leukaemia are urgently needed. Carrots have been suggested as a potential treatment for leukaemia in traditional medicine and have previously been studied in other contexts as potential sources of anticancer agents. Indicating that carrots may contain bioactive compounds, which may show potential in leukaemia therapies. This study investigated the effects of five fractions from carrot juice extract (CJE) on human lymphoid leukaemia cell lines, together with five purified bioactive compounds found in Daucus carota L, including: three polyacetylenes (falcarinol, falcarindiol and falcarindiol-3-acetate) and two carotenoids (beta-carotene and lutein). Their effects on induction of apoptosis using Annexin V/PI and Caspase 3 activity assays analysed via flow cytometry and inhibition of cellular proliferation using Cell Titer Glo assay and cell cycle analysis were investigated. Treatment of all three lymphoid leukaemia cell lines with the fraction from carrot extracts which contained polyacetylenes and carotenoids was significantly more cytotoxic than the 4 other fractions. Treatments with purified polyacetylenes also induced apoptosis in a dose and time responsive manner. Moreover, falcarinol and falcarindiol-3-acetate isolated from Daucus carota L were more cytotoxic than falcarindiol. In contrast, the carotenoids showed no significant effect on either apoptosis or cell proliferation in any of the cells investigated. This suggests that polyacetylenes rather than beta-carotene or lutein are the bioactive components found in Daucus carota L and could be useful in the development of new leukemic therapies. Here, for the first time, the cytotoxic effects of polyacetylenes have been shown to be exerted via induction of apoptosis and arrest of cell cycle.

  8. Identification and Characterization of Terpene Synthases Potentially Involved in the Formation of Volatile Terpenes in Carrot (Daucus carota L.) Roots.

    Science.gov (United States)

    Yahyaa, Mosaab; Tholl, Dorothea; Cormier, Guy; Jensen, Roderick; Simon, Philipp W; Ibdah, Mwafaq

    2015-05-20

    Plants produce an excess of volatile organic compounds, which are important in determining the quality and nutraceutical properties of fruit and root crops, including the taste and aroma of carrots (Daucus carota L.). A combined chemical, biochemical, and molecular study was conducted to evaluate the differential accumulation of volatile terpenes in a diverse collection of fresh carrots (D. carota L.). Here, we report on a transcriptome-based identification and functional characterization of two carrot terpene synthases, the sesquiterpene synthase, DcTPS1, and the monoterpene synthase, DcTPS2. Recombinant DcTPS1 protein produces mainly (E)-β-caryophyllene, the predominant sesquiterpene in carrot roots, and α-humulene, while recombinant DcTPS2 functions as a monoterpene synthase with geraniol as the main product. Both genes are differentially transcribed in different cultivars and during carrot root development. Our results suggest a role for DcTPS genes in carrot aroma biosynthesis.

  9. Characterising genes associated with flowering time in carrot (Daucus carota L.) using transcriptome analysis.

    Science.gov (United States)

    Ou, C-G; Mao, J-H; Liu, L-J; Li, C-J; Ren, H-F; Zhao, Z-W; Zhuang, F-Y

    2017-03-01

    Carrot is generally regarded as a biennial plant with an obligatory vernalization requirement. Early spring cultivation makes plants vulnerable to premature bolting, which results in a loss of commercial value. However, our knowledge of flowering time genes and flowering mechanisms in carrot remain limited. Bolting behavior of D. carota ssp. carota 'Songzi', a wild species sensitive to flower induction by vernalization and photoperiod, and orange cultivar 'Amsterdam forcing', and their offspring were investigated in different growing conditions. We performed RNA-seq to identify the flowering time genes, and digital gene expression (DGE) analysis to examine their expression levels. The circadian patterns of related genes were identified by qPCR. The results showed bolting behavior of carrot was influenced by low temperature, illumination intensity and photoperiod. A total of 45 flowering time-related unigenes were identified, which were classified into five categories including photoperiod, vernalization, autonomous and gibberellin pathway, and floral integrators. Homologs of LATE ELONGATED HYPOCOTYL (LHY) and CONSTANS-LIKE 2 (COL2) were more highly expressed under short day condition than under long day condition. Homologs of COL2, CONSTANS-LIKE 5 (COL5), SUPPRESSION OF OVEREXPRESSION OF CONSTANS 1 (SOC1), FLOWERING LOCUS C (FLC) and GIBBERELLIC ACID INSENSITIVE (GAI) were differentially expressed between 'Songzi' and 'Amsterdam forcing'. The homolog of COL2 (Dct43207) was repressed by light, but that of COL5 (Dct20940) was induced. A preliminary model of genetic network controlling flowering time was constructed by associating the results of DGE analysis with correlation coefficients between genes. This study provides useful information for further investigating the genetic mechanism of flowering in carrot.

  10. Combating photooxidative stress in green hairy roots of Daucus carota cultivated under light irradiation.

    Science.gov (United States)

    Mukherjee, Chiranjit; Sircar, Debabrata; Chatterjee, Moniya; Das, Sampa; Mitra, Adinpunya

    2014-01-15

    The light-dependent generation of active oxygen species, which can disrupt normal metabolic process of plant, is termed as photo-oxidative stress. Plants are equipped with enzymatic and non-enzymatic antioxidative defence system to reduce the effect of such stress. Hairy root culture of Daucus carota when cultivated under continuous illumination (250 μmol m(-2)s(-1)) turned green. To know the reason behind that and photo-oxidative stress response in green hairy roots, activities of several antioxidant enzymes were measured. When compared with normal hairy roots, green hairy roots showed an enhanced superoxide dismutase (SOD) activity. Treatment with a SOD inhibitor diethyldithiocarbamate led to suppression of SOD activity in a concentration-dependent manner in green hairy roots. Interestingly, SOD-suppressed root showed three-fold enhanced caffeic acid glucoside accumulation in the soluble fraction as compared to untreated ones. While ascorbate peroxidase activity showed marginal increase in green hairy roots, a decrease in the activities of guaiacol peroxidase and catalase were observed. SDS-PAGE of crude protein profile from green hairy roots showed a distinct band, which was absent in normal hairy roots. MALDI-TOF-MS/MS analysis of the extracted protein confirmed it as the large subunit of RuBisCO. RT-PCR based expression analysis of betaine aldehyde dehydrogenase showed enhanced transcript levels in green hairy roots as compared to normal hairy roots, whereas reverse trends were observed with the transcripts accumulation for phenylalanine ammonia-lyase and chalcone synthase. These findings corroborate with the in vitro BADH activities in hairy roots, and thus indicate an important role of this stress enzyme in combating photo-oxidative stress in green hairy roots upon continuous light exposure. Copyright © 2013 Elsevier GmbH. All rights reserved.

  11. Nutritional, physical, and sensory evaluation of hydroponic carrots (Daucus carota L.) from different nutrient delivery systems.

    Science.gov (United States)

    Gichuhi, P N; Mortley, D; Bromfield, E; Bovell-Benjamin, A C

    2009-01-01

    Carrot (Daucus carota L.) has the highest carotenoid content among foods and is consumed in large quantities worldwide, while at the same time its market demand continues to increase. Carotenoids have also been associated with protective effects against cancer and other chronic diseases. The most predominant carotenoids in carrots are beta- and alpha-carotenes. Moisture, ash, fat, texture, color, carotene content, and consumer acceptance of carrots grown in a hydroponic system with nutrient film technique (NFT) and microporous tube membrane system (MTMS) were evaluated. The moisture contents of the NFT- and MTMS-grown carrots ranged from 86.8 +/- 0.13% to 92.2 +/- 2.25% and 80.9 +/- 0.31% to 91.6 +/- 1.01%, respectively. Fat and ash contents of the carrots were negligible. NFT-grown Oxheart had the most beta-carotene (9900 +/- 20 microg/100 g) while Juwaroot had the least (248 +/- 10 microg/100 g). However, the beta-carotene content of Juwaroot from the NFT batch II carrots was 3842 +/- 6 microg/100 g. MTMS-grown carrots had less variation in the total beta-carotene contents (2434 +/- 89 to 10488 +/- 8 microg/100 g) than those from NFT. Overall, Nantes Touchan (4.8 +/- 2.3) and Nevis-F (7 +/- 1.4) from NFT were the least and most preferred by consumers. Mignon was also acceptable to consumers, and significantly (P < 0.05) more preferred than the other carrots in that NFT batch. MTMS-grown Kinko and Paramex, which were significantly (P < 0.05) more preferred than Nandrin-F and the commercial field-grown carrot, were equally liked by consumers. Nevis-F, Mignon (NFT), Paramex, and Kinko (MTMS) are potentially good cultivars to be included in NASA's food system.

  12. Characterisation of polyacetylenes isolated from carrot (Daucus carota) extracts by negative ion tandem mass spectrometry.

    Science.gov (United States)

    Rai, Dilip K; Brunton, Nigel P; Koidis, Anastasios; Rawson, Ashish; McLoughlin, Padraig; Griffiths, William J

    2011-08-15

    The potential use of negative electrospray ionisation mass spectrometry (ESI-MS) in the characterisation of the three polyacetylenes common in carrots (Daucus carota) has been assessed. The MS scans have demonstrated that the polyacetylenes undergo a modest degree of in-source decomposition in the negative ionisation mode while the positive ionisation mode has shown predominantly sodiated ions and no [M+H](+) ions. Tandem mass spectrometric (MS/MS) studies have shown that the polyacetylenes follow two distinct fragmentation pathways: one that involves cleavage of the C3-C4 bond and the other with cleavage of the C7-C8 bond. The cleavage of the C7-C8 bond generated product ions m/z 105.0 for falcarinol, m/z 105/107.0 for falcarindiol, m/z 147.0/149.1 for falcarindiol-3-acetate. In addition to these product ions, the transitions m/z 243.2 → 187.1 (falcarinol), m/z 259.2 → 203.1 (falcarindiol), m/z 301.2 → 255.2/203.1 (falcarindiol-3-acetate), mostly from the C3-C4 bond cleavage, can form the basis of multiple reaction monitoring (MRM)-quantitative methods which are poorly represented in the literature. The 'MS(3) ' experimental data confirmed a less pronounced homolytic cleavage site between the C11-C12 bond in the falcarinol-type polacetylenes. The optimised liquid chromatography (LC)/MS conditions have achieved a baseline chromatographic separation of the three polyacetylenes investigated within 40 min total run-time.

  13. Influence of carrot psyllid (Trioza apicalis) feeding or exogenous limonene or methyl jasmonate treatment on composition of carrot (Daucus carota) leaf essential oil and headspace volatiles.

    Science.gov (United States)

    Nissinen, Anne; Ibrahim, Mohamed; Kainulainen, Pirjo; Tiilikkala, Kari; Holopainen, Jarmo K

    2005-11-02

    The effect of carrot psyllid (Trioza apicalis Förster) feeding and limonene and methyl jasmonate (MeJA) treatments on the essential oil composition and headspace volatiles of carrot (Daucus carota ssp. sativus), cvs. Parano and Splendid, leaves was studied. Carrot psyllid feeding significantly increased the concentrations of sabinene, beta-pinene, and limonene, whereas limonene treatment increased the concentration of (Z)-beta-ocimene in the leaves of both cultivars. The limonene treatment significantly increased the concentration of total phenolics in the leaves of both cultivars, and MeJA treatment increased phenolic concentration in the leaves of Parano. Exogenous limonene spray did not decrease the number of carrot psyllid eggs laid either 2 or 24 h after treatment. The results suggest that carrot psyllid feeding induces changes in the endogenous monoterpene pool in the carrot leaves. Limonene and MeJA treatments affect some induced defenses of the carrot, but the exogenous limonene spray is not an effective oviposition deterrent against carrot psyllid.

  14. Uptake and transformation of phenol and chlorophenols by hairy root cultures of Daucus carota, Ipomoea batatas and Solanum aviculare.

    Science.gov (United States)

    de Araujo, Brancilene Santos; Dec, Jerzy; Bollag, Jean Marc; Pletsch, Marcia

    2006-04-01

    Hairy root cultures of Daucus carota L., Ipomoea batatas L. and Solanum aviculare Forst were investigated for their susceptibility to the highly toxic pollutants phenol and chlorophenols and for the involvement of inherent peroxidases in the removal of phenols from liquid media. Roots of D. carota grew normally in medium containing 1000 micromol l(-1) of phenol, whilst normal growth of roots of I. batatas and S. aviculare was only possible at levels up to 500 micromol l(-1). In the presence of chlorophenols, normal root growth was possible only in concentrations not exceeding 50 micromol l(-1), except for I. batatas which was severely affected at all concentrations. Despite the reduction in biomass, the growth of S. aviculare cultures was sustained in medium containing up to 2000 micromol l(-1) of phenol or 2-chlorophenol, and up to 500 micromol l(-1) of 2,6-dichlorophenol. The amounts of phenol removed by the roots within 72 h of treatment were 72.7%, 90.7% and 98.6% of the initial concentration for D. carota, I. batatas and S. aviculare, respectively. For the removal of 2,6-dichlorophenol the values were, respectively, 83.0%, 57.7% and 73.1%. Phenols labelled with 14C were absorbed by the root tissues and condensed with highly polar cellular substances as well as being incorporated into the cell walls or membranes. The results suggest that S. aviculare, an ornamental plant, would be best suited for remediation trials under field conditions.

  15. Differential expression and co-regulation of carrot AOX genes (Daucus carota).

    Science.gov (United States)

    Campos, Maria Doroteia; Cardoso, Hélia Guerra; Linke, Bettina; Costa, José Hélio; de Melo, Dirce Fernandes; Justo, Lígia; Frederico, António Miguel; Arnholdt-Schmitt, Birgit

    2009-12-01

    Alternative oxidase (AOX) is a mitochondrial protein encoded by the nuclear genome. In higher plants AOX genes form a small multigene family mostly consisting of the two subfamilies AOX1 and AOX2. Daucus carota L. is characterized by a unique extension pattern of AOX genes. Different from other plant species studied so far it contains two genes in both subfamilies. Therefore, carrot was recently highlighted as an important model in AOX stress research to understand the evolutionary importance of both AOX subfamilies. Here we report on the expression patterns of DcAOX1a, DcAOX1b and DcAOX2a and DcAOX2b. Our results demonstrate that all of the four carrot AOX genes are expressed. Differential expression was observed in organs, tissues and during de novo induction of secondary root phloem explants to growth and development. DcAOX1a and DcAOX2a indicated a differential transcript accumulation but a similar co-expression pattern. The genes of each carrot AOX sub-family revealed a differential regulation and responsiveness. DcAOX2a indicated high inducibility in contrast to DcAOX2b, which generally revealed low transcript abundance and rather weak responses. In search for within-gene sequence differences between both genes as a potential reason for the differential expression patterns, the structural organization of the two genes was compared. DcAOX2a and DcAOX2b showed high sequence similarity in their open reading frames (ORFs). However, length variability was observed in the N-terminal exon1 region. The predicted cleavage site of the mitochondrial targeting sequence in this locus is untypical small for both genes and consists of 35 amino acids for DcAOX2a and of 21 amino acids for DcAOX2b. The importance of structural gene organization and the relevancy of within-gene sequence variations are discussed. Our results strengthen the value of carrot as a model plant for future studies on the importance of AOX sub family evolution.

  16. Cloning and Sequencing of Antifreeze Protein Gene in Daucus carota var.sativus Hoffm Deutschl%胡萝卜Daucus carota var.sativus Hoffm Deutschl抗冻蛋白基因的克隆及测序

    Institute of Scientific and Technical Information of China (English)

    尹明安; 崔鸿文; 樊代明; 郭立

    2001-01-01

    以宁夏吴忠胡萝卜、陕西华县胡萝卜和陕西汉中胡萝卜3个地方品种为材料,用PCR(polymerase chain reaction)的方法克隆了中国胡萝卜的抗冻蛋白基因(afp),测定了其核苷酸序列,并和英国胡萝卜的afp序列进行了对比。在所测1004个核苷酸中,两变种碱基不同者有36个,占3.6%,其中无义突变21个,有义突变15个。按有义突变计,同源性为98.5%。%Three carrot cultivar Wuzhong Ningxia,Huaxian Shaanxi and Hanzhong Shaanxi were used as test material and antifreeze protein gene(a fp)of Chinese carrot(Daucus carota var.sativus Hoffm Deutschl)was clon ed and sequenced by PCR(polymerase chain reaction).Obtained sequence was compare d with that of British carrot(Daucus carota var.autumn King).There were 36 different bases in 1004 nucleotides(3.6%)between the two va-r ieties. Among the different bases there were 21 nonsense mutations and 15 sens e mutations.According to sense mutations,homology was 98.5%.

  17. [Effect of blanching and hygroscopic coating on quality of fresh cut carrots (Daucus carota var. chantenay) during storage].

    Science.gov (United States)

    Uquiche Carrasco, Edgar; Cisneros-Zevallos, Luis

    2002-06-01

    The effect of blanching at low temperatures (solution 1% acid citric, 50 degrees C for 30 seconds) and the application of glycerol as humectant (3% p/p, 20 seconds) to preserve the quality of fresh-cut carrots (Daucus carota) were studied as individual or combined treatments. Four treatments were evaluated: a control by dipping samples for 30 seconds in distilled water (T1); blanching (T2); glycerol application (T3); and blanching plus glycerol application (T4). Total carotenoids content, color, soluble solids and weight loss were monitored during storage. Results showed no differences between treatments in carotenoids content (p > 0.10) and soluble solids (p > 0.05). However, differences were observed between treatments in weight loss (p Blanched samples (T2 and T4) showed small changes in orange color intensity compared to treatments T1 and T3 (p < 0.05).

  18. Modeling the transfer of arsenic from soil to carrot (Daucus carota L.)--a greenhouse and field-based study.

    Science.gov (United States)

    Ding, Changfeng; Zhou, Fen; Li, Xiaogang; Zhang, Taolin; Wang, Xingxiang

    2015-07-01

    Reliable empirical models describing arsenic (As) transfer in soil-plant systems are needed to estimate the human As burden from dietary intake. A greenhouse experiment was conducted in parallel with a field trial located at three sites through China to develop and validate soil-plant transfer models to predict As concentrations in carrot (Daucus carota L.). Stepwise multiple linear regression relationships were based on soil properties and the pseudo total (aqua regia) or available (0.5 M NaHCO3) soil As fractions. Carrot As contents were best predicted by the pseudo total soil As concentrations in combination with soil pH and Fe oxide, with the percentage of variation explained being up to 70 %. The constructed prediction model was further validated and improved to avoid overprotection using data from the field trial. The final obtained model is of great practical relevance to the prediction of As uptake under field conditions.

  19. Investigation and Assessment of 40K Accumulation in the Segments of an Ordinary Carrot (Daucus carota L. and Red Beet (Beta vulgaris L.

    Directory of Open Access Journals (Sweden)

    Renata Mikalauskienė

    2012-12-01

    Full Text Available The article deals with an alteration in specific activity and transfer factor of naturally occurring radionuclide 40K from soil with a loamy structure to the segments of root vegetables – an ordinary carrot (Daucus carota L. and red beet (Beta vulgaris L.. The paper establishes the specific activity of 40K in soil and vegetable segments and evaluates transfer factors (TF. The obtained data show that the transfer factor of naturally occurring radionuclide 40K from soil to the segments of the ordinary carrot (Daucus carota L. varied from 0,28 to 0,99 while that of the red beet (Beta vulgaris L. – from 0,53 to 0,96. The results of the study could be used for estimating 40K transfer in the system “soil-plant” and accumulation of radionuclide in composting garden waste.Artilce in Lithuanian

  20. Estudio Cinético y de Superficie de Respuesta para la Rehidratación de Zanahorias (Daucus carota Liofilizadas Kinetic Study and Surface Response Analysis on the Rehydration of Frozen-dried Carrot (Daucus carota

    Directory of Open Access Journals (Sweden)

    María L Zambrano

    2007-01-01

    Full Text Available Se estudio el efecto de la temperatura sobre la cinética, el coeficiente de difusión y la adición de ácido cítrico y cloruro de sodio sobre la rehidratación de zanahorias (Daucus carota. Se aplicó un diseño de superficie de respuesta con 4 factores y 3 puntos centrales. No se encontró diferencia significativa (a=0.05 a temperaturas de 70 y 93ºC con constante cinética promedio de 0.42 min-1, con diferencias entre los coeficientes de difusión entre 6.1 a 3.18 x10-9m²/s. Las variables de mayor influencia sobre la rehidratación son el contenido de ácido cítrico, la temperatura y la concentración de ácido cítrico, a los niveles estudiados. Las condiciones de mayor rehidratación para las muestras de zanahoria liofilizada fueron obtenidas para una concentración de 0.636 g/100ml ácido, con un óptimo de 7kg de agua/kg de sólido seco, de acuerdo al modelo de superficie de respuesta obtenido. El valor promedio fue de 6.65kg de agua/kg de sólido seco.In this work the effect of temperature on the kinetics, the diffusion coefficient sand the addition of citric acid and sodium chloride on the rehydration of frozen-dried carrots (Daucus carota have been studied. The model response surface was 4 factors with 3 central points. For 70 and 93 ºC, no significant differences (a=0.05 for the kinetic constant with mean of 0.42min-1. Important differences were found between diffusion coefficients, from 6.1 to 3.18 x10-9 m²/s for 70 y 93ºC. The variables with higher influence on rehydration were the content of citric acid, citric acid concentration and temperature, at the studied levels. The best condition for rehydration of carrot frozen-dried was obtained for 0.636 g/100ml acid concentration with 7 kg of water/kg dry solid, using the surface model. The mean value was 6.65 kg of water/kg dry solid.

  1. Bioavailability of Cadmium and Nickel to Daucus carota L. and Corchorus olitorius L. treated by Compost and Microorganisms

    Directory of Open Access Journals (Sweden)

    Mohamed Mahmoud Mohamed Ahmed

    2017-05-01

    Full Text Available The research work investigates the impact of the interaction between several rates of compost and microorganisms (bacteria, fungi, mycorrhiza and their residual effects on growth and metals (Cd and Ni uptake in carrot (Daucus carota L. and jew´s mallow (Corchorus olitorius L. grown thereafter. Soil samples were collected from agricultural areas near the superphosphate factory and used for the pot experiments. Microorganisms were isolated from the area under study of which four fungal isolates (Aspergillus niger, A. terreus, Penicillium funiculosum and Fusarium culmorum, one bacterial species (Bacillus sp. and four species of arbuscular mycorrhizal fungi (AMF (Acaulospora bireticulata, Gigaspora margarit, Glomus lamellosum and Glomus mosseae were used for inoculations in the pot experiments. Also, four compost rates were applied equivalent to 0, 5, 10, 15 t ha-1 dry compost. The application of amendments increased the biomass of carrot and jew´s mallow plants. The highest reduction of Cd and Ni contents in both plants were observed by the simultaneous applications of compost with microbes or AMF to polluted soils. The DTPA extractable values of Cd and Ni in soils of jew´s mallow plants were higher those of carrot plants. The transfer factor (TF for Cd and Ni in both plants decreased significantly (p<0.05 as the result of interaction between compost and microorganism. This study concluded that the integration between compost and microorganisms have a positive effect on reducing the bioavailability of the metal polluted soil.

  2. Transfer model of lead in soil-carrot (Daucus carota L.) system and food safety thresholds in soil.

    Science.gov (United States)

    Ding, Changfeng; Li, Xiaogang; Zhang, Taolin; Wang, Xingxiang

    2015-09-01

    Reliable empirical models describing lead (Pb) transfer in soil-plant systems are needed to improve soil environmental quality standards. A greenhouse experiment was conducted to develop soil-plant transfer models to predict Pb concentrations in carrot (Daucus carota L.). Soil thresholds for food safety were then derived inversely using the prediction model in view of the maximum allowable limit for Pb in food. The 2 most important soil properties that influenced carrot Pb uptake factor (ratio of Pb concentration in carrot to that in soil) were soil pH and cation exchange capacity (CEC), as revealed by path analysis. Stepwise multiple linear regression models were based on soil properties and the pseudo total (aqua regia) or extractable (0.01 M CaCl2 and 0.005 M diethylenetriamine pentaacetic acid) soil Pb concentrations. Carrot Pb contents were best explained by the pseudo total soil Pb concentrations in combination with soil pH and CEC, with the percentage of variation explained being up to 93%. The derived soil thresholds based on added Pb (total soil Pb with the geogenic background part subtracted) have the advantage of better applicability to soils with high natural background Pb levels. Validation of the thresholds against data from field trials and literature studies indicated that the proposed thresholds are reasonable and reliable.

  3. Isolation and Properties of Deoxyribonucleic Acid from Protoplasts of Cell Suspension Cultures of Ammi visnaga and Carrot (Daucus carota) 1

    Science.gov (United States)

    Ohyama, K.; Gamborg, O. L.; Miller, R. A.

    1972-01-01

    A procedure is described for the isolation of native DNA from protoplasts of ammi (Ammi visnaga) and carrot (Daucus carota) cells. Protoplasts were produced from 40 grams of fresh cells by enzyme hydrolysis and lysed with sodium dodecyl sulfate. The DNA was purified by treatment with pronase and ribonuclease. Final isolation was achieved by sucrose density gradient centrifugation. The melting temperature of ammi and carrot DNA in 0.15 m NaCl and 15 mm trisodium citrate buffer, pH 7.0, was 84.0 C and 84.5 C, respectively. The molecular weight for ammi DNA was 1.43 × 108, and for carrot DNA it was 1.56 × 108. Ammi DNA exhibited a single band at 1.690 grams per cubic centimeter in CsCl, whereas carrot DNA showed two bands, one at 1.693 grams per cubic centimeter and another at 1.706 grams per cubic centimeter. Ammi DNA consisted of a doublestranded form, since denaturation of the DNA caused a complete upward shift of 0.020 grams per cubic centimeter. PMID:16658166

  4. Isolation and Properties of Deoxyribonucleic Acid from Protoplasts of Cell Suspension Cultures of Ammi visnaga and Carrot (Daucus carota).

    Science.gov (United States)

    Ohyama, K; Gamborg, O L; Miller, R A

    1972-09-01

    A procedure is described for the isolation of native DNA from protoplasts of ammi (Ammi visnaga) and carrot (Daucus carota) cells. Protoplasts were produced from 40 grams of fresh cells by enzyme hydrolysis and lysed with sodium dodecyl sulfate. The DNA was purified by treatment with pronase and ribonuclease. Final isolation was achieved by sucrose density gradient centrifugation.The melting temperature of ammi and carrot DNA in 0.15 m NaCl and 15 mm trisodium citrate buffer, pH 7.0, was 84.0 C and 84.5 C, respectively. The molecular weight for ammi DNA was 1.43 x 10(8), and for carrot DNA it was 1.56 x 10(8). Ammi DNA exhibited a single band at 1.690 grams per cubic centimeter in CsCl, whereas carrot DNA showed two bands, one at 1.693 grams per cubic centimeter and another at 1.706 grams per cubic centimeter. Ammi DNA consisted of a doublestranded form, since denaturation of the DNA caused a complete upward shift of 0.020 grams per cubic centimeter.

  5. Reinvestigation of the bitter compounds in carrots (Daucus carota L.) by using a molecular sensory science approach.

    Science.gov (United States)

    Schmiech, Ludger; Uemura, Daisuke; Hofmann, Thomas

    2008-11-12

    In order to reinvestigate the key molecules inducing bitter off-taste of carrots ( Daucus carota L.), a sensory-guided fractionation approach was applied to bitter carrot extracts. Besides the previously reported bitter compounds, 6-methoxymellein (1), falcarindiol (2), falcarinol (3), and falcarindiol-3-acetate (4), the following compounds were identified for the first time as bitter compounds in carrots with low bitter recognition thresholds between 8 and 47 micromol/L: vaginatin (5), isovaginatin (6), 2-epilaserine oxide (7), laserine oxide (8), laserine (14), 2-epilaserine (15), 6,8-O-ditigloyl- (9), 6-O-angeloyl-, 8-O-tigloyl- (10), 6-O-tigloyl-, 8-O-angeloyl- (11), and 6-, 8-O-diangeloyl-6 ss,8alpha,11-trihydroxygermacra-1(10) E,4 E-diene (12), as well as 8-O-angeloyl-tovarol (13) and alpha-angeloyloxy-latifolone (16). Among these bitter molecules, compounds 9, 10, 13, and 16 were not previously identified in carrots and compounds 6, 11, and 12 were yet not reported in the literature.

  6. Purple carrot (Daucus carota L.) polyacetylenes decrease lipopolysaccharide-induced expression of inflammatory proteins in macrophage and endothelial cells.

    Science.gov (United States)

    Metzger, Brandon T; Barnes, David M; Reed, Jess D

    2008-05-28

    Carrots ( Daucus carota L.) contain phytochemicals including carotenoids, phenolics, polyacetylenes, isocoumarins, and sesquiterpenes. Purple carrots also contain anthocyanins. The anti-inflammatory activity of extracts and phytochemicals from purple carrots was investigated by determining attenuation of the response to lipopolysaccharide (LPS). A bioactive chromatographic fraction (Sephadex LH-20) reduced LPS inflammatory response. There was a dose-dependent reduction in nitric oxide production and mRNA of pro-inflammatory cytokines (IL-6, IL-1beta, TNF-alpha) and iNOS in macrophage cells. Protein secretions of IL-6 and TNF-alpha were reduced 77 and 66% in porcine aortic endothelial cells treated with 6.6 and 13.3 microg/mL of the LH-20 fraction, respectively. Preparative liquid chromatography resulted in a bioactive subfraction enriched in the polyacetylene compounds falcarindiol, falcarindiol 3-acetate, and falcarinol. The polyacetylenes were isolated and reduced nitric oxide production in macrophage cells by as much as 65% without cytotoxicity. These results suggest that polyacetylenes, not anthocyanins, in purple carrots are responsible for anti-inflammatory bioactivity.

  7. Enhanced accumulation of phytosterols and phenolic compounds in cyclodextrin-elicited cell suspension culture of Daucus carota.

    Science.gov (United States)

    Miras-Moreno, Begoña; Almagro, Lorena; Pedreño, M A; Sabater-Jara, Ana Belén

    2016-09-01

    In this work, suspension-cultured cells of Daucus carota were used to evaluate the effect of β-cyclodextrins on the production of isoprenoid and phenolic compounds. The results showed that the phytosterols and phenolic compounds were accumulated in the extracellular medium (15100μgL(-1) and 477.46μgL(-1), respectively) in the presence of cyclodextrins. Unlike the phytosterol and phenolic compound content, β-carotene (1138.03μgL(-1)), lutein (25949.54μgL(-1)) and α-tocopherol (8063.82μgL(-1)) chlorophyll a (1625.13μgL(-1)) and b (9.958 (9958.33μgL(-1)) were mainly accumulated inside the cells. Therefore, cyclodextrins were able to induce the cytosolic mevalonate pathway, increasing the biosynthesis of phytosterols and phenolic compounds, and accumulate them outside the cells. However, in the absence of these cyclic oligosaccharidic elicitors, carrot cells mainly accumulated carotenoids through the methylerythritol 4-phosphate pathway. Therefore, the use of cyclodextrins would allow the extracellular accumulation of both phytosterols and phenolic compounds by diverting the carbon flux towards the cytosolic mevalonate/phenylpropanoid pathway.

  8. Daucus carota L.--an old model for cell reprogramming gains new importance through a novel expansion pattern of alternative oxidase (AOX) genes.

    Science.gov (United States)

    Costa, J H; Cardoso, H G; Campos, M D; Zavattieri, A; Frederico, A M; Fernandes de Melo, D; Arnholdt-Schmitt, B

    2009-08-01

    The paper highlights Daucus carota L. as an ideal model to complement plant stress research on Arabidopsis thaliana L. Recently, alternative oxidase (AOX) is discussed as functional marker candidate for cell reprogramming upon stress. Carrot is the most studied species for cell reprogramming and our current research reveals that it is the only one that has expanded both AOX sub-family genes. We point to recently published, but not discussed results on conserved differences in the vicinity of the most active functional site of AOX1 and AOX2, which indicate the importance of studying AOX sequence polymorphism, structure and functionality. Thus, stress-inducible experimental systems of D. carota are especially appropriate to bring research on stress tolerance a significant step forward.

  9. Resposta de plantas de beterraba (Beta vulgaris e de cenoura (Daucus carota à deriva simulada de glyphosate e clomazone Response of beetroot (Beta vulgaris and carrot (Daucus carota to simulated glyphosate and clomazone drift

    Directory of Open Access Journals (Sweden)

    R.P. Rogoli

    2008-06-01

    Full Text Available Várias espécies de hortaliças são de muita importância para a alimentação humana e tornam-se alvos da deriva de herbicidas, pois comumente são cultivadas nas proximidades de culturas como arroz, soja e milho, pulverizadas com esses produtos. Neste trabalho, objetivou-se verificar possíveis efeitos de doses reduzidas dos herbicidas glyphosate e clomazone sobre plantas de beterraba (Beta vulgaris e de cenoura (Daucus carota, em diferentes fases de desenvolvimento. As doses avaliadas dos herbicidas foram de 0, 5, 10, 15 e 20% da dose recomendada, equivalentes a 0, 63, 126, 189 e 252 g ha-1 de glyphosate e 0, 14,4, 28,8, 43,2 e 57,6 g ha-1 de clomazone, respectivamente, aplicadas aos 20, 30 e 40 dias após a emergência das culturas. Observou-se aumento no percentual de fitotoxicidade do glyphosate com o incremento na dose do herbicida, e a maior suscetibilidade ocorreu com a deriva nos estádios mais precoces, em ambas as espécies. As doses de clomazone não causaram qualquer sintoma detectável visualmente para as plantas de beterraba e de cenoura. Os resultados sugerem que o herbicida glyphosate causa injúrias às plantas de beterraba e cenoura, independentemente do estádio em que ocorre a interceptação do produto. No entanto, o herbicida clomazone não interfere no desenvolvimento inicial de plantas de beterraba e cenoura.Herbicide drift over horticultural crops is a common problem in the state of Rio Grande do Sul, mainly in areas near rice, soybean and corn fields. The objective of this research was to evaluate glyphosate and clomazone drift effects on beetroot (Beta vulgaris and carrot (Daucus carota plants. The herbicides were sprayed at three different growth stages: 20, 30 and 40 days after seedling emergence. Herbicide rates evaluated were 0, 5, 10, 15, and 20% of the label rate. The sprayed rates were 0, 63, 126, 189 and 252 g ha-1 of glyphosate and 0.0, 14.4, 28.8, 43.2 and 57.6 g ha-1 of clomazone. Glyphosate injury to

  10. Chemical composition of carrot seeds (Daucus carota L. cultivated in Turkey: characterization of the seed oil and essential oil

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    Chalchat, Jean Claude

    2007-12-01

    Full Text Available Chemical composition and physical properties were established in carrot (Daucus carota L. seeds from Konya, Turkey to investigate their potential uses. Mature seeds were evaluated for moisture, crude protein, crude oil, crude fiber, ash, HCl-insoluble ash, total carbohydrate, essential oil yield and weight of 1000 seeds. Also, relative density, refractive index, free fatty acids, peroxide value, iodine value, saponification number and unsaponifiable matter were determined in the seed oil. The main fatty acids identified by gas chromatography were petroselinic (59.35%, linoleic (11,82%, palmitic (10.01% and stearic (2.41% acids. Mineral contents (Al, Ca, Cu, Fe, K, Li, Mg, Mn, Na, Ni, P, Se, Sr, V and Zn of seeds were also determined by Inductively Coupled Plasma Atomic Emission Spectrometry (ICP-AES. The seeds were found to be rich in protein, fiber and ash. The essential oil and edible oil compositions of carrot seeds from Konya were investigated by GC and GC-MS. The oil yields of essential and edible oil from carrot seeds were established as 0.83% and 7.84%, respectively. The major constituents of seed essential oil were carotol (66.78%, daucene (8.74%, (Z,Z--farnesene (5.86%, germacrene D (2.34%, trans--bergamotene (2.41% and -selinene (2.20%. Whereas, carotol (30.55%, daucol (12.60% and copaenol (0.62% were the important components of edible carrot seed oil. However, the dominant component of both oils was carotol.Se determinó la composición química y las propiedades físicas de las semillas de zanahoria (Daucus carota L. obtenidas en Konya, Turquía, con objeto de investigar usos potenciales de las mismas. Se determinó la humedad, el peso, el contenido proteico, en aceite, en fibra, en ceniza, en ceniza insoluble en ácido clorhídrico, los carbohidratos totales, y el rendimiento de la obtención de aceite esencial a partir de 1000 semillas maduras. Asimismo se determinó la densidad relativa, el índice de refracci

  11. The quality of carrot (Daucus carota L. cultivated in the field depending on iodine and selenium fertilization

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    Smoleń Sylwester

    2016-12-01

    Full Text Available The aim of the study was to evaluate the influence of various chemical forms of iodine (I− and IO3− and selenium (SeO32− and SeO42− on the nutritional and health-promoting quality of carrot (Daucus carota L. storage roots. The experiment (conducted in 2012-2014 comprised the soil fertilization of carrot ‘Kazan’ F1 in the following combinations: 1. Control, 2. KI, 3. KIO3, 4. Na2SeO4, 5. Na2SeO3, 6. KI + Na2SeO4, 7. KIO3 + Na2SeO4, 8. KI + Na2SeO3, 9. KIO3+ Na2SeO3. Iodine and selenium were applied twice: before sowing and as top dressing in a total dose of 5 kg I ha−1 and 1 kg Se ha−1. No significant influence of iodine and selenium fertilization was noted with respect to average root weight and leaf yield. Each year, the application of KI + Na2SeO4 negatively affected the content of glucose and total sugars in carrot. An increased sucrose level was noted in the roots of plants treated with KIO3 + Na2SeO4, with a total sugar concentration comparable to the control. Irrespective of the year, carrots fertilized with KI were characterized by the highest accumulation of nitrates (III – NO2− in roots. The simultaneous introduction of iodine and selenium compounds (KI + Na2SeO4, KIO3 + Na2SeO4, KI + Na2SeO3 and KIO3 + Na2SeO3 into the soil reduced the content of nitrates (III in carrot as compared to combinations with the individual application of these compounds. The influence of the tested factors on other analysed parameters (the content of dry weight, nitrates (V, chlorides, oxalates, citrates, free amino acids, carotenoids, phenolic compounds, phenylpropanoids, flavonols and anthocyanins as well as free radical scavenging activity (DPPH was rather year-dependent.

  12. EPIDEMIOLOGICAL ASPECTS OF LEAF BLIGHT OF CARROT (Daucus carota L. CAUSED BY Alternaria dauci (KÜHN GROVES & SKOLKO: SURVIVAL OF Alternaria dauci IN VEGETAL RESIDUES OF CARROT (Daucus carota L. CROP ASPECTOS EPIDEMIOLÓGICOS DA QUEIMA DAS FOLHAS DA CENOURA (Daucus carota L. CAUSADA POR Alternaria dauci (Kühn GROVES & SKOLKO: Sobrevivência de Alternaria dauci (Kühn Groves & SKOLKO em restos culturais da cenoura (Daucus carota L.

    Directory of Open Access Journals (Sweden)

    Geraldo Martins Chaves

    2007-09-01

    Full Text Available

    The spore viability of Alternaria dauci (Kühn Groves & Skolko in carrot (Daucus carota L. debris which were kept at different levels of temperature and relative humidity, without light, was studied. The temperature levels tested were 8, 16, 24 and 32°C, and the relative humidity levels 3, 18, 51, 73 and 100%. The treatments were different combinations of these levels. Humidity was the more important factor in preserving the fungus spore ability to germinate and its infectivity. Under conditions of high relative humidity and temperatures of 24 and 32°C, the spores rapidly lost their viability. This did not happen when the relative humidity was equal to, or below, 51%. The survival of fungus mycelium on carrot petioles was studied in non-treated organic soil, at different humidity levels, at three different depths, during a period of 120 days. Soil humidity was the factor of major significance in the persistence of the mycelium, followed by depths and time factors. In petioles kept at depths of 10 and 20 cm in humid soil, the survival was greatly reduced, while survival was markedly higher in those kept at the surface of dry soil. The effect of humidity on the viability of mycelium was studied also under soiless condition. Petioles were maintained in relative humidity controlled chamber, at 24°C. In saturated atmosphere (100% humidity, the mycelium viability was lost in less than 20 days. It was concluded that both, the conidial and mycelial form of Alternaria dauci are quite sensitive to high humidity levels.

    Estudou-se a sobrevivência das formas conidial e miceliana de Alternaria dauci, respectivamente, sobre folhas necrosadas e pecíolos de cenoura, sob diferentes condições mesológicas. Os esporos do fungo sobre conidióforos em folhas necrosadas de cenoura foram mantidos por 120 dias sob condi

  13. Effects of sewage sludge on Di-(2-ethylhexyl) phthalate uptake by plants. [Lactuca sativa L. ; Daucus carota L. ; Capsicum annuum L. ; Festuca arundinacea Schreb

    Energy Technology Data Exchange (ETDEWEB)

    Aranda, J.M.; O' Connor, G.A.; Eiceman, G.A. (New Mexico State Univ., Las Cruces (USA))

    Di-(2-ethylhexyl) phthalate (DEHP) is a priority organic pollutant frequently found in municipal sludges. A greenhouse study was conducted to determine the effect of sludge on plant uptake of {sup 14}C-DEHP (carbonyl labeled). Plants grown included three food chain crops, lettuce (Lactuca sativa L.), carrot (Daucus carota L.) and chile pepper (Capsicum annuum L.) and tall fescue (Festuca arundinacea Schreb.). Net {sup 14}C concentration in plants grown in soil amended with {sup 14}C-DEHP-contaminated sludge was independent of sludge rate (at the same DEHP loading) for lettuce, chile fruit, and carrot roots. Net {sup 14}C concentration, however, was inversely related to sludge rate in carrot tops, fescue, and chile plants. Intact DEHP was not detected in plants by gas chromatography/mass spectrometry analysis. Calculated plant DEHP concentrations (based on measured net {sup 14}C concentrations and DEHP specific activities) were generally correlated better with DEHP soil solution concentrations than with total DEHP soil concentrations. Net {sup 14}C-DEHP bioconcentration factors were calculated from initial soil DEHP concentration and plant fresh weights. Bioconcentration factors ranged from 0.01 to 0.03 for fescue, lettuce, carrots, and chile, suggesting little DEHP uptake. Additionally, because intact DEHP was not detected in any plants, DEHP uptake by plants was of minor importance and would not limit sludge additions to soils used to grow these crops.

  14. RENDIMIENTO DE 12 HÍBRIDOS COMERCIALES DE ZANAHORIA (Daucus carota L. EN EL CAMPO Y EN LA PLANTA DE EMPAQUE

    Directory of Open Access Journals (Sweden)

    Fernando Richmond-Zumbado

    2010-01-01

    Full Text Available Se evaluaron 12 híbridos comerciales de zanahoria (Daucus carota L. en Cot de Oreamuno, Cartago, Costa Rica, con el objetivo de evaluar el rendimiento en el campo y la planta de empaque, de junio a octubre del 2007. Los híbridos evaluados fueron: Bangor F1, Big Sur, Bolero F1, Concerto F1 (VAC 03 F1, XCR3688, Esperanza, Nandrin F1, Napoli F1, S-505, Spearhead, Trinity y Sirkana. Se obtuvo el número y peso de las raíces de los híbridos comerciales clasificadas en raíces totales, comerciales y diferentes variables de rechazo; en el campo y en la planta de empaque. Los híbridos con el mayor rendimiento comercial en campo y en planta empacadora, en orden decreciente, fueron: Bangor F1, Esperanza, Concerto F1, Nandrin F1 y Sirkana. Los materiales con menor rechazo en campo fueron Nandrin F1, Sirkana y Bangor F1, y en planta empacadora fueron: Big Sur, Sirkana, Napoli F1, Bolero F1 y XCR3688. Las principales causas de rechazo de la zanahoria en el campo y en la planta empacadora fueron: raíces bifurcadas, con rajadura, raíz pequeña y tamaño jumbo.

  15. Antimicrobial Activity of Aloevera barbedensis, Daucus carota, Emblica officinalis, Honey and Punica granatum and Formulation of a Health Drink and Salad

    Directory of Open Access Journals (Sweden)

    Jeswin Philip

    2012-09-01

    Full Text Available Aims: Indian folk medicine has been in practice from time immemorial. Traditional medicine interconnects our body with nature for a healthy living. The naturally occurring antimicrobials in food vary in their efficacy and function, toxicology, safety and mechanism of action against microorganisms.Methodology and Results: The study revitalizes the traditional system of medicine in order to achieve self reliance in health care and health for all by analyzing the antimicrobial property of aqueous extracts of aloevera (Aloevera barbedensis, carrot (Daucus carota, Indian gooseberry (Emblica officinalis, honey and pomegranate (Punicagranatum, and to assess the reason for inhibition of growth of pathogenic organisms by DNA and protein analysis. Various aqueous extracts showed inhibition to microrganisms like Escherichia coli, Pseudomonas aeruginosa, Salmonella typhi, Shigella flexineri and Staphylococcus aureus.Conclusion significance and impact of study: The study also formulated and standardized a nourishing health drink and salad using the tested foods and estimated their shelf life and nutritive value. The health drink and salad had a low protein, low fat and moderate carbohydrate content. Therapeutically this drink and salad can be used to treat obesity.

  16. Differential Contribution of the First Two Enzymes of the MEP Pathway to the Supply of Metabolic Precursors for Carotenoid and Chlorophyll Biosynthesis in Carrot (Daucus carota)

    Science.gov (United States)

    Simpson, Kevin; Quiroz, Luis F.; Rodriguez-Concepción, Manuel; Stange, Claudia R.

    2016-01-01

    Carotenoids and chlorophylls are photosynthetic pigments synthesized in plastids from metabolic precursors provided by the methylerythritol 4-phosphate (MEP) pathway. The first two steps in the MEP pathway are catalyzed by the deoxyxylulose 5-phosphate synthase (DXS) and reductoisomerase (DXR) enzymes. While DXS has been recently shown to be the main flux-controlling step of the MEP pathway, both DXS and DXR enzymes have been proven to be able to promote an increase in MEP-derived products when overproduced in diverse plant systems. Carrot (Daucus carota) produces photosynthetic pigments (carotenoids and chlorophylls) in leaves and in light-exposed roots, whereas only carotenoids (mainly α- and β-carotene) accumulate in the storage root in darkness. To evaluate whether DXS and DXR activities influence the production of carotenoids and chlorophylls in carrot leaves and roots, the corresponding Arabidopsis thaliana genes were constitutively expressed in transgenic carrot plants. Our results suggest that DXS is limiting for the production of both carotenoids and chlorophylls in roots and leaves, whereas the regulatory role of DXR appeared to be minor. Interestingly, increased levels of DXS (but not of DXR) resulted in higher transcript abundance of endogenous carrot genes encoding phytoene synthase, the main rate-determining enzyme of the carotenoid pathway. These results support a central role for DXS on modulating the production of MEP-derived precursors to synthesize carotenoids and chlorophylls in carrot, confirming the pivotal relevance of this enzyme to engineer healthier, carotenoid-enriched products. PMID:27630663

  17. 不同封装密度对胡萝卜苗青贮品质的影响%Effect of Different Packaging Density on the Fermentation Quality of Daucus carota Seedings Silage

    Institute of Scientific and Technical Information of China (English)

    丁婉; 刘子瑜; 董翔; 许庆方; 孙江; 许佳瑞

    2015-01-01

    为了探讨不同封装密度对胡萝卜苗青贮发酵品质、养分及氨态氮含量的影响,以高(486.0 kg/m3)、中(428.4 kg/m3)、低(300.3 kg/m3)3种封装密度桶装密封青贮胡萝卜苗,青贮330 d后取样进行分析。结果表明,低密度胡萝卜苗青贮与高密度胡萝卜苗青贮相比,其pH值和氨态氮含量都显著降低(P<0.05);且低密度组胡萝卜苗青贮粗蛋白含量高于其他2组。从胡萝卜苗青贮发酵品质、养分及氨态氮含量综合评定,胡萝卜苗青贮的最佳封装密度应选在低密度(300.3 kg/m3左右)。%This study was conducted to investigate the effect of different packaging density on the quality, nutrient content and ammonia nitrogen content of Daucus carota seedings fermented silage. The Daucus carota seedings were packaged to ferment with high density (486.0 kg/m3), moderated density (428.4 kg/m3) and low density (300.3 kg/m3), respectively. After 330 d fermentation, the samples were collected and tested. While pH value and ammonia nitrogen content of Daucus carota seedings silage fermented with low packaging density were significantly lower than those of silage fermented with high packaging density (P<0.05), the crude protein content of silage fermented with low packaging density was higher than that of silage fermented with high and moderate packaging density. Based on the of comprehensive evaluation of fermentation quality, nutrient content and ammonia nitrogen content, the 300.3 kg/m3 was recommended as preferred packaging density of Daucus carota seedings fermented silage.

  18. ISOLATION AND IDENTIFICATION OF BACTERIAL CAUSED SOFT ROT DISEASE ON CARROT (Daucus carota L.) LOCAL VARIETY IN BALI

    OpenAIRE

    Ni Wayan Desi Bintari; Retno Kawuri; Meitini Wahyuni Proborini

    2015-01-01

    Soft rot bacteria infection in carrot tuber (D. carota L.) causes severe economic losses. Soft rot disease can be caused by various bacteria belonging to Enterobacteriaceae. This study aimed to isolate and identify bacteria as causal agent of soft rot disease in local carrot variety in Bali. Samples were collected at Badung Tradisional Market, Denpasar, Bali. Isolation was carried out by serial dilution method (Platting Method). Eight bacteria (BL1, BL2, BL3, BL4, BL5, BL6, BL7 and BL8) were ...

  19. Identification of candidates for interacting partners of the tail domain of DcNMCP1, a major component of the Daucus carota nuclear lamina-like structure.

    Science.gov (United States)

    Mochizuki, Ryota; Tsugama, Daisuke; Yamazaki, Michihiro; Fujino, Kaien; Masuda, Kiyoshi

    2017-02-01

    NMCP/CRWN (NUCLEAR MATRIX CONSTITUENT PROTEIN/CROWDED NUCLEI) is a major component of a protein fibrous meshwork (lamina-like structure) on the plant inner nuclear membrane. NMCP/CRWN contributes to regulating nuclear shape and nuclear functions. An NMCP/CRWN protein in Daucus carota (DcNMCP1) is localized to the nuclear periphery in interphase cells, and surrounds chromosomes in cells in metaphase and anaphase. The N-terminal region and the C-terminal region of DcNMCP1 are both necessary for localizing DcNMCP1 to the nuclear periphery. Here candidate interacting partners of the amino acid position 975-1053 of DcNMCP1 (T975-1053), which is present in the C-terminal region and contains a conserved sequence that plays a role in localizing DcNMCP1 to the nuclear periphery, are screened for. Arabidopsis thaliana nuclear proteins were subjected to far-Western blotting with GST-fused T975-1053 as a probe, and signals were detected at the positions corresponding to ∼70, ∼40, and ∼18 kDa. These ∼70, ∼40, and ∼18 kDa nuclear proteins were identified by mass spectrometry, and subjected to a yeast 2-hybrid (Y2H) analysis with T975-1053 as bait. In this analysis, the ∼40 kDa protein ARP7, which is a nuclear actin-related protein possibly involved in regulating chromatin structures, was confirmed to interact with T975-1053. Independently of the far-Western blotting, a Y2H screen was performed using T975-1053 as bait. Targeted Y2H assays confirmed that 3 proteins identified in the screen, MYB3, SINAT1, and BIM1, interact with T975-1053. These proteins might have roles in NMCP/CRWN protein-mediated biologic processes.

  20. Effect of pulsed electric field treatment on enzyme kinetics and thermostability of endogenous ascorbic acid oxidase in carrots (Daucus carota cv. Nantes).

    Science.gov (United States)

    Leong, Sze Ying; Oey, Indrawati

    2014-03-01

    The objective of this research was to study the enzyme kinetics and thermostability of endogenous ascorbic acid oxidase (AAO) in carrot purée (Daucus carota cv. Nantes) after being treated with pulsed electric field (PEF) processing. Various PEF treatments using electric field strength between 0.2 and 1.2kV/cm and pulsed electrical energy between 1 and 520kJ/kg were conducted. The enzyme kinetics and the kinetics of AAO thermal inactivation (55-70°C) were described using Michaelis-Menten model and first order reaction model, respectively. Overall, the estimated Vmax and KM values were situated in the same order of magnitude as the untreated carrot purée after being exposed to pulsed electrical energy between 1 and 400kJ/kg, but slightly changed at pulsed electrical energy above 500kJ/kg. However, AAO presented different thermostability depending on the electric field strength applied. After PEF treatment at the electric field strength between 0.2 and 0.5kV/cm, AAO became thermolabile (i.e. increase in inactivation rate (k value) at reference temperature) but the temperature dependence of k value (Ea value) for AAO inactivation in carrot purée decreased, indicating that the changes in k values were less temperature dependent. It is obvious that PEF treatment affects the temperature stability of endogenous AAO. The changes in enzyme kinetics and thermostability of AAO in carrot purée could be related to the resulting carrot purée composition, alteration in intracellular environment and the effective concentration of AAO released after being subjected to PEF treatment. Copyright © 2013 Elsevier Ltd. All rights reserved.

  1. ISOLATION AND IDENTIFICATION OF BACTERIAL CAUSED SOFT ROT DISEASE ON CARROT (Daucus carota L. LOCAL VARIETY IN BALI

    Directory of Open Access Journals (Sweden)

    Ni Wayan Desi Bintari

    2015-03-01

    Full Text Available Soft rot bacteria infection in carrot tuber (D. carota L. causes severe economic losses. Soft rot disease can be caused by various bacteria belonging to Enterobacteriaceae. This study aimed to isolate and identify bacteria as causal agent of soft rot disease in local carrot variety in Bali. Samples were collected at Badung Tradisional Market, Denpasar, Bali. Isolation was carried out by serial dilution method (Platting Method. Eight bacteria (BL1, BL2, BL3, BL4, BL5, BL6, BL7 and BL8 were isolated from soft rot tuber. BL6 isolate showed positive result in Postulat Koch test that caused soft rot on carrot tuber. The result of identification by Microgen™ GnA+B-ID System and identification book Bergeys’s Manual of Determinative Bacteriology Ninth Edition (Holt et al., 1994, BL6 was identified as Citrobacter.

  2. Use of low doses of cobalt 60 gamma radiation on beet (Beta vulgaris L.), carrot (Daucus carota L.) and radish (Raphanus sativus L.) seed to stimulate increase yield; Emprego da radiacao gama do cobalto 60 em sementes de beterraba (Beta vulgaris L.), cenoura (Daucus carota L.) e rabanete (Raphanus sativus L.) para estimular o aumento da producao

    Energy Technology Data Exchange (ETDEWEB)

    Bovi, Jose Eduardo

    2000-07-01

    The research had the aim of evaluating the effects of low doses of Cobalt-60 gamma radiation on seeds of radish (Raphanus sativus L.) cultiva Champion, cultivars Nantes Forto (european origin) and Brasilia (Rio Grande do Sul origin) carrot (Daucus carota L. var. sativus (Hoffm.) Thell), and red beet (Beta vulgaris L.) cultivar Tall Top Early Wonder before sowing, its effects on plant growth, on the yield and roots storage of two tillages: with sowing in the same day of radiation and six days after radiation seeds. The data showed that the seeds radiation did not interfered negatively on plants growth, and the species presented differences as roots production and doses on both plantation: radish with 5,0 Gy and 2,5 Gy doses respectively to the first and the second sowings, Brasilia carrot with 2,5 Gy dose to both sowings. Nantes carrot with 2,5 Gy and 5,0 Gy respectively to the first and the second sowings, and beet with 7,5 Gy and 5,0 Gy respectively to the first and the second plantations. There is not statistics difference by Tukey test (5% and 1%) and none relation between seeds radiation and loss weight on roots storage. (author)

  3. Projected dietary intake of zinc and copper from consumption of carrot (Daucus carota exposed to metal oxide nanoparticles or metal ions

    Directory of Open Access Journals (Sweden)

    Stephen D. Ebbs

    2016-02-01

    Full Text Available The expanding production and use of engineered nanomaterials have raised concerns about the potential risk of those materials to food safety and human health. In a prior study, the accumulation of Zn and Cu from ZnO, CuO, or CeO2, respectively, was examined in carrot (Daucus carota L. grown in sand culture in comparison to accumulation from exposure to equivalent concentrations of ionic Zn2+, Cu2+, or Ce4+. The fresh weight concentration data for peeled and unpeeled carrots were used to project dietary intake of each metal by seven age-mass classes from child to adult based on consumption of a single serving of carrot. Dietary intake was compared to the oral reference dose (oral Rfd for chronic toxicity for Zn or Cu and estimated mean and median oral RfD values for Ce based on nine other rare earth elements. Reverse dietary intake calculations were also conducted to estimate the number of servings of carrot, the mass of carrot consumed, or the tissue concentration of Zn or Cu that would cause the oral RfD to be exceeded upon consumption. The projections indicated for Zn and Cu, the oral RfD would be exceeded in only a few highly unrealistic scenarios of exceedingly high Zn or Cu concentrations in the substrate from ZnO or CuO or consumption of excessive amounts of unpeeled carrot. The implications associated with the presence of Ce in the carrot tissues depended upon whether the mean or median oral RfD value from the rare earth elements was used as a basis for comparison. The calculations further indicated that peeling carrots reduced the projected dietary intake by one to two orders of magnitude for both ENM- and ionic-treated carrots. Overall in terms of total metal concentration, the results suggested no specific impact of the ENM form on dietary intake. The effort here provided a conservative view of the potential dietary intake of these three metals that might result from consumption of carrots exposed to nanomaterials and how peeling

  4. Projected Dietary Intake of Zinc, Copper, and Cerium from Consumption of Carrot (Daucus carota) Exposed to Metal Oxide Nanoparticles or Metal Ions.

    Science.gov (United States)

    Ebbs, Stephen D; Bradfield, Scott J; Kumar, Pawan; White, Jason C; Ma, Xingmao

    2016-01-01

    The expanding production and use of engineered nanomaterials (ENMs) have raised concerns about the potential risk of those materials to food safety and human health. In a prior study, the accumulation of Zn, Cu, and Ce from ZnO, CuO, or CeO2, respectively, was examined in carrot (Daucus carota L.) grown in sand culture in comparison to accumulation from exposure to equivalent concentrations of ionic Zn(2+), Cu(2+), or Ce(4+). The fresh weight concentration data for peeled and unpeeled carrots were used to project dietary intake of each metal by seven age-mass classes from child to adult based on consumption of a single serving of carrot. Dietary intake was compared to the oral reference dose (oral RfD) for chronic toxicity for Zn or Cu and estimated mean and median oral RfD values for Ce based on nine other rare earth elements. Reverse dietary intake calculations were also conducted to estimate the number of servings of carrot, the mass of carrot consumed, or the tissue concentration of Zn, Cu, or Ce that would cause the oral RfD to be exceeded upon consumption. The projections indicated for Zn and Cu, the oral RfD would be exceeded in only a few highly unrealistic scenarios of exceedingly high Zn or Cu concentrations in the substrate from ZnO or CuO or consumption of excessive amounts of unpeeled carrot. The implications associated with the presence of Ce in the carrot tissues depended upon whether the mean or median oral RfD value from the rare earth elements was used as a basis for comparison. The calculations further indicated that peeling carrots reduced the projected dietary intake by one to two orders of magnitude for both ENM- and ionic-treated carrots. Overall in terms of total metal concentration, the results suggested no specific impact of the ENM form on dietary intake. The effort here provided a conservative view of the potential dietary intake of these three metals that might result from consumption of carrots exposed to nanomaterials (NMs) and how

  5. Association of Phosphatidylinositol Kinase, Phosphatidylinositol Monophosphate Kinase, and Diacylglycerol Kinase with the Cytoskeleton and F-Actin Fractions of Carrot (Daucus carota L.) Cells Grown in Suspension Culture : Response to Cell Wall-Degrading Enzymes.

    Science.gov (United States)

    Tan, Z; Boss, W F

    1992-12-01

    Phosphatidylinositol kinase (PI), phosphatidylinositol monophosphate (PIP) kinase, and diacylglycerol (DAG) kinase activities were detected in the cytoskeletal fraction isolated from microsomes and plasma membranes of carrot (Daucus carota L.) cells grown in suspension culture. The lipid kinase activities were associated with the actin filament fraction (F-actin fraction) isolated from the cytoskeleton. The PI and PIP kinase activity in the F-actin fraction significantly increased after cells were treated with Driselase, a mixture of cell wall-degrading enzymes; however, the DAG kinase activity in the F-actin fraction was unaffected by the Driselase treatment. These data indicate that at least one form of PI, PIP, and DAG kinase preferentially associates with actin filaments and/or actin binding proteins and that cytoskeletal-associated PI and PIP kinase activities can change in response to external stimulation.

  6. Association of Phosphatidylinositol Kinase, Phosphatidylinositol Monophosphate Kinase, and Diacylglycerol Kinase with the Cytoskeleton and F-Actin Fractions of Carrot (Daucus carota L.) Cells Grown in Suspension Culture 1

    Science.gov (United States)

    Tan, Zheng; Boss, Wendy F.

    1992-01-01

    Phosphatidylinositol kinase (PI), phosphatidylinositol monophosphate (PIP) kinase, and diacylglycerol (DAG) kinase activities were detected in the cytoskeletal fraction isolated from microsomes and plasma membranes of carrot (Daucus carota L.) cells grown in suspension culture. The lipid kinase activities were associated with the actin filament fraction (F-actin fraction) isolated from the cytoskeleton. The PI and PIP kinase activity in the F-actin fraction significantly increased after cells were treated with Driselase, a mixture of cell wall-degrading enzymes; however, the DAG kinase activity in the F-actin fraction was unaffected by the Driselase treatment. These data indicate that at least one form of PI, PIP, and DAG kinase preferentially associates with actin filaments and/or actin binding proteins and that cytoskeletal-associated PI and PIP kinase activities can change in response to external stimulation. Images Figure 2 PMID:16653250

  7. Chlorogenic acid biosynthesis: characterization of a light-induced microsomal 5-O-(4-coumaroyl)-D-quinate/shikimate 3'-hydroxylase from carrot (Daucus carota L. ) cell suspension cultures

    Energy Technology Data Exchange (ETDEWEB)

    Kuehnl, T.K.; Koch, U.; Heller, W.; Wellmann, E.

    1987-10-01

    Microsomal preparations from carrot (Daucus carota L.) cell suspension cultures catalyze the formation of trans-5-O-caffeoyl-D-quinate (chlorogenate) from trans-5-O-(4-coumaroyl)-D-quinate. trans-5-O-(4-Coumaroyl)shikimate is converted to about the same extent to trans-5-O-caffeoylshikimate. trans-4-O-(4-Coumaroyl)-D-quinate, trans-3-O-(4-coumaroyl)-D-quinate, trans-4-coumarate, and cis-5-O-(4-coumaroyl)-D-quinate do not act as substrates. The reaction is strictly dependent on molecular oxygen and on NADPH as reducing cofactor. NADH and ascorbic acid cannot substitute for NADPH. Cytochrome c, Tetcyclacis, and carbon monoxide inhibit the reaction suggesting a cytochrome P-450-dependent mixed-function monooxygenase. Competition experiments as well as induction and inhibition phenomena indicate that there is only one enzyme species which is responsible for the hydroxylation of the 5-O-(4-coumaric) esters of both D-quinate and shikimate. The activity of this enzyme is greatly increased by in vivo irradiation of the cells with blue/uv light. We conclude that the biosynthesis of the predominant caffeic acid conjugates in carrot cells occurs via the corresponding 4-coumaric acid esters. Thus, in this system, 5-O-(4-coumaroyl)-D-quinate can be seen as the final intermediate in the chlorogenic acid pathway.

  8. Larvicidal Activity of Essential Oil from the Fruits of Daucus carota against Mosquitoes%野胡萝卜果实精油对蚊幼虫的毒杀活性

    Institute of Scientific and Technical Information of China (English)

    秦巧慧; 彭映辉; 何建国; 熊国红; 扶巧梅

    2011-01-01

    Insecticidal activity of essential oil extracted from fruits of Daucus carota against Aedes albopictus and Culex pipiens quinquefasciatus was investigated by immersion method and the main compounds of the essential oil were qualitatively and quantitatively analyzed with gas chromatography-mass spectrometry.LC50 values of the essential oil against the 4th instar larvae of A.albopictus and C.pipiens quinquefasciatus at 24 h were 67.87 μg·mL-1 and 34.12 μg·mL-1,respectively.Thirty-four compounds were identified in the essential oil,including the main component α-Pinene(54.72%),followed by β-bisabolene(11.35%) and β-asarone(10.14%).Six active compounds were quantitatively determined,including α-pinene(up to 577.46 mg·mL-1 in the oil),myrcene(80.26 mg·mL-1),limonene(28.95 mg·mL-1),β-caryophyllene(24.38 mg·mL-1),β-pinene(11.59 mg·mL-1) and γ-terpinen(2.33 mg·mL-1).The results indicated that the essential oil showed higher larvicidal activity against mosquitoes than many other plant essential oils which have been documented.It might be considered as a potential source for production of efficient and environment-friendly mosquito larvicide.%采用浸液法研究了野胡萝卜Daucus carota果实精油对白纹伊蚊Aedes albopictus和致倦库蚊Culexpipiens quinquefasciatus幼虫的毒杀活性;利用气相色谱-质谱联用(GC-MS)对精油的主要成分进行了定性、定量分析。结果发现,野胡萝卜果实精油毒杀白纹伊蚊和致倦库蚊4龄幼虫的24h LC50值分别为67.87μg.mL-1和34.12μg.mL-1;精油中共含有34种化合物,相对含量最高的是α-蒎烯(54.72%),其次为β-红没药烯(11.35%)和β-细辛脑(1

  9. Advances in transforming kudzu (Pueraria phaseoloides and carrot (Daucus carota var. Danvers 126 roots with different Agrobacterium rhizogenes strains for increasing MA fungi growth

    Directory of Open Access Journals (Sweden)

    Marisol Medina Sierra

    2011-12-01

    Full Text Available Kudzú (P. phaseoloides and carrot (D. carota roots were transformed in this survey into different kinds of culture medium by using five different A. rhizogenes strains. These presented different behaviour both in carrot transformation by A. rhizogenes 15834, A.r.8196 and A.r.2659 strains as well as kudzu transformation by A.r.15834 and A.r.1724 strains. Transformed carrot root growth was increased in WM culture medium, whilst transformed kudzu root growth did not increase in either the same medium or in modified MS medium. Transformed carrot roots were used for G. intrarradices increase and sporulation; however, wild AMF strains, isolated from a mining area (the lower Cauca area of Antioquia, did not grow either in roots from this specie or those from kudzu, in spite of this plant having great affinity for wild AMF strains. The results represent an advance in the procedure for DNA isolation and keeping AMF collections, required for other research.

  10. Carryover of perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS) from soil to plant and distribution to the different plant compartments studied in cultures of carrots (Daucus carota ssp. Sativus), potatoes (Solanum tuberosum), and cucumbers (Cucumis Sativus).

    Science.gov (United States)

    Lechner, Mareike; Knapp, Holger

    2011-10-26

    A vegetation study was carried out to investigate the carryover of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) from soil mixed with contaminated sewage sludge to potato, carrot, and cucumber plants. Analysis was done by liquid-extraction using acetonitrile with dispersive SPE cleanup and subsequent HPLC-MS/MS. In order to assess the transfer potential from soil, transfer factors (TF) were calculated for the different plant compartments: TF = [PFC](plant (wet substance))/[PFC](soil (dry weight)). The highest TF were found for the vegetative plant compartments with average values for PFOS below those for PFOA: cucumber, 0.17 (PFOS), 0.88 (PFOA); potato, 0.36 (PFOS), 0.40 (PFOA); carrot, 0.38 (PFOS), 0.53 (PFOA). Transfer of PFOA and PFOS into potato peelings (average values of TF: PFOA 0.03, PFOS 0.04) exceeded the carryover to the peeled tubers (PFOA 0.01, PFOS potatoes (TF < 0.01). For PFOA, it was higher (TF: 0.03).

  11. ASPECTOS EPIDEMIOLÓGICOS DA QUEIMA DAS FOLHAS DA CENOURA (Daucus carota L CAUSADA POR Alternaria dauci (Kühn Groves & Skolko: Efeito da Concentração de Inóculo e Determinação do Período de Geração de Alternaria dauci (Kühn Groves & Skolko. EPIDEMIOLOGICAL ASPECTS OF LEAF BLIGHT OF CARROT (Daucus carota L. CAUSED BY Alternaria dauci (KÜHN GROVES & SKOLKO: EFFECT OF INOCULUN CONCENTRATION AND DETERMINATION OF THE GENERATION TIME OF Alternaria dauci

    Directory of Open Access Journals (Sweden)

    Yvo de Carvalho

    2007-09-01

    produzidos em agar-V8. Em síntese pode-se concluir que: 1. A concentração de inóculo afeta o grau de severidade da queima das folhas e, conseqüentemente, a produção; mas a freqüência do ciclo das infecções secundárias, é que parece determinar o caráter da epifitia. 2. A amplitude do período de geração de Alternaria dauci depende principalmente da vitalidade do inóculo.

    The effect of the concentration of conidial inoculum of Alternaria dauci (Kühn Groves & Skolko in relation to the degree of severity of occurrence of leaf blight on carrot (Daucus carota L. cultivar Nantes Half Long at 67 - 70 days of age, was studied. The plants were cultivated under green-house conditions innoculated by atomizing with spore suspension, and afterwards, maintained for 72 hours in an incubation chamber with temperature controlled at 18 – 24°C and relative humidity of 100% (foggy. The spore concentrations tests were 0, 10², 10³, 5x10³ and 2x10^4 spores/ml. There were significant differences in the treatments at the 5% level in relation to severity of the leaf blight, the total weight of the plants, and the weight of the roots. The generation period of the fungus was 6-7, 5, 6 and 6 days, respectively, at 16, 20, 24°C and room temperature. Detached leaflets were innoculated individually, by using a small brush to spread the spores. After innoculation, the leaflets were maintained in a moisture chamber. The vitality of the inoculum, seems to be a highly important factor in the determination of the generation time of the of fungus.

  12. growth and yield response of carrot (daucus carota l.)

    African Journals Online (AJOL)

    User

    A 5 x 2 factorial field experiment in a randomised complete block design with four replications was conducted at the College ... The two spacings were: (i) 30 cm x 5 cm and (ii) 20 cm x 5 cm. ..... Plant Pathology, North Carolina State Uni- versity ...

  13. Obtaining carrot (Daucus carota L.) plants in isolated microspore cultures.

    Science.gov (United States)

    Górecka, K; Kowalska, U; Krzyzanowska, D; Kiszczak, W

    2010-01-01

    Microspores were cultured on the modified B5 liquid medium containing 2.4D (0.1 mg L(-1)), NAA (0.1 mg L(-1)), L-glutamine (500 mg L(-1), L-serine (100 mg L(-1)), and sucrose (100 g L(-1)). The developmental stages of microspores and divisions were observed. Initially, the formation of binuclear and multicellular structures was noticed. Plants regenerated in the cultures in which the tetrad stage of microsporogenesis had predominated. Embryoids were still forming 24 weeks after the cultures were set up. Six weeks after the transfer of androgenetic embryos onto the B5 regeneration medium, they were converted into complete plants. Out of 90 androgenetic plants planted in a growth chamber, 42 plants adapted to the new conditions. All of those plants proved to be diploids in cytometric analysis.

  14. Interferência de plantas daninhas na cultura da cenoura (Daucus carota Weed interference on carrot crop (Daucus carota

    Directory of Open Access Journals (Sweden)

    M Coelho

    2009-12-01

    Full Text Available A cenoura é uma importante hortaliça no Brasil, cuja produtividade pode ser muito reduzida devido à interferência de plantas daninhas. O objetivo desta pesquisa foi avaliar efeitos de períodos de convivência das plantas daninhas na produtividade da cenoura cultivar "Brasília" e na comunidade de plantas daninhas. Os tratamentos foram constituídos de períodos crescentes de convivência ou controle das plantas daninhas. A comunidade de plantas daninhas foi avaliada quanto a número de indivíduos, matéria seca acumulada e frequência de ocorrência das espécies, e a cultura, quanto à produtividade comercial. As principais plantas daninhas foram Ageratum conyzoides, Digitaria nuda, Eleusine indica e Lepidium virginicum. A presença da comunidade de plantas daninhas durante todo o ciclo da cultura pode acarretar perdas de 94% na produtividade, evidenciando alta suscetibilidade da cenoura à interferência das plantas daninhas. Contudo, não houve período crítico de prevenção à interferência, e um único controle das plantas daninhas, entre 22 e 31 dias após a semeadura, foi suficiente para garantir a produção da cultura.Carrot is an important horticultural crop in Brazil, and its productivity may be highly reduced due to weed interference. This study evaluated the effects of weed coexistence periods on carrot cultivar 'Brasilia' yield and on the weed community. The treatments were constituted of increasing weed coexistence periods or weed-free periods. The weed community was evaluated based on number of individuals, dry matter accumulation, and frequency of occurrence; while the crop was evaluated based on marketable productivity. The main weeds were Ageratum conyzoides, Digitaria nuda, Eleusine indica, and Lepidium virginicum. The presence of the weed community throughout the crop season can cause yield losses of 94%, showing high susceptibility of the carrot crop to weed interference. However, there was no critical period for weed removal, and a single weed control between 22 and 31 days after sowing should be sufficient to guarantee crop production.

  15. Pervasive Mitochondrial Sequence Heteroplasmy in Natural Populations of Wild Carrot, Daucus carota spp. carota L.

    Directory of Open Access Journals (Sweden)

    Jennifer R Mandel

    Full Text Available Exceptions to the generally accepted rules that plant mitochondrial genomes are strictly maternally inherited and that within-individual sequence diversity in those genomes, i.e., heteroplasmy, should be minimal are becoming increasingly apparent especially with regard to sequence-level heteroplasmy. These findings raise questions about the potential significance of such heteroplasmy for plant mitochondrial genome evolution. Still studies quantifying the amount and consequences of sequence heteroplasmy in natural populations are rare. In this study, we report pervasive sequence heteroplasmy in natural populations of wild carrot, a close relative of the cultivated crop. In order to assay directly for this heteroplasmy, we implemented a quantitative PCR assay that can detect and quantify intra-individual SNP variation in two mitochondrial genes (Cox1 and Atp9. We found heteroplasmy in > 60% of all wild carrot populations surveyed and in > 30% of the 140 component individuals that were genotyped. Heteroplasmy ranged from a very small proportion of the total genotype (e.g., 0.995:0.005 to near even mixtures (e.g., 0.590:0.410 in some individuals. These results have important implications for the role of intra-genomic recombination in the generation of plant mitochondrial genome genotypic novelty. The consequences of such recombination are evident in the results of this study through analysis of the degree of linkage disequilibrium (LD between the SNP sites at the two genes studied.

  16. Morphogenetic responses of cultured totipotent cells of carrot /Daucus carota var. carota/ at zero gravity

    Science.gov (United States)

    Krikorian, A. D.; Steward, F. C.

    1978-01-01

    An experiment designed to test whether embryos capable of developing from isolated somatic carrot cells could do so under conditions of weightlessness in space was performed aboard the unmanned Soviet biosatellite Kosmos 782 under the auspices of the joint United States-Soviet Biological Satellite Mission. Space flight and weightlessness seem to have had no adverse effects on the induction of embryoids or on the development of their organs. A portion of the crop of carrot plantlets originated in space and grown to maturity were not morphologically different from controls.

  17. Characterization of centromeric histone H3 (CENH3 variants in cultivated and wild carrots (Daucus sp..

    Directory of Open Access Journals (Sweden)

    Frank Dunemann

    Full Text Available In eukaryotes, centromeres are the assembly sites for the kinetochore, a multi-protein complex to which spindle microtubules are attached at mitosis and meiosis, thereby ensuring segregation of chromosomes during cell division. They are specified by incorporation of CENH3, a centromere specific histone H3 variant which replaces canonical histone H3 in the nucleosomes of functional centromeres. To lay a first foundation of a putative alternative haploidization strategy based on centromere-mediated genome elimination in cultivated carrots, in the presented research we aimed at the identification and cloning of functional CENH3 genes in Daucus carota and three distantly related wild species of genus Daucus varying in basic chromosome numbers. Based on mining the carrot transcriptome followed by a subsequent PCR-based cloning, homologous coding sequences for CENH3s of the four Daucus species were identified. The ORFs of the CENH3 variants were very similar, and an amino acid sequence length of 146 aa was found in three out of the four species. Comparison of Daucus CENH3 amino acid sequences with those of other plant CENH3s as well as their phylogenetic arrangement among other dicot CENH3s suggest that the identified genes are authentic CENH3 homologs. To verify the location of the CENH3 protein in the kinetochore regions of the Daucus chromosomes, a polyclonal antibody based on a peptide corresponding to the N-terminus of DcCENH3 was developed and used for anti-CENH3 immunostaining of mitotic root cells. The chromosomal location of CENH3 proteins in the centromere regions of the chromosomes could be confirmed. For genetic localization of the CENH3 gene in the carrot genome, a previously constructed linkage map for carrot was used for mapping a CENH3-specific simple sequence repeat (SSR marker, and the CENH3 locus was mapped on the carrot chromosome 9.

  18. Estudio de la Cinética de Rehidratación de Zanahoria (Daucus Carota Deshidratadas Rehydration Kinetics Study of the Dehydrated Carrot (Daucus carota

    Directory of Open Access Journals (Sweden)

    Yendi I Melquíades

    2009-01-01

    Full Text Available Se presenta un estudio cinético de la rehidratación de zanahorias para dos tipos de cortes o geometrías (placas y cilindros. Las zanahorias fueron lavadas, peladas y cortadas para someterlas a un tratamiento de 5 min. en agua destilada a 80 ºC antes de ser deshidratadas en un horno de convección a diferentes temperaturas. La cinética de rehidratación se obtuvo por medio de un modelo difusional y se determinó su posible dependencia con la temperatura mediante una relación de tipo Arrhenius. Se observó que la rehidratación se ve afectada por el pretratamiento debido a los cambios estructurales, que finalmente afectan la capacidad de rehidratación de las muestras. Los coeficientes de difusión no presentan tal dependencia.A kinetic study of the rehydration of carrots for two types of cuts (geometries (slabs and cylinders, is presented. The carrots were washed, peeled and cut an then treated for 5 min in distilled water at 80 ºC before being dehydrated in a convection oven at different temperatures. The rehydration kinetics was obtained by means of a diffusion model and its temperature dependence was determined by an Arrhenius type relationship. It was observed that the rehydration is affected by the pretreatment due to the structural changes that finally affect the rehydration capacity of the samples. Diffusion coefficients do not present such dependence.

  19. Poliaminas na embriogênese somática em cenoura (Daucus carota L. Polyamines in somatic embryogenesis in carrot (Daucus carota L.

    Directory of Open Access Journals (Sweden)

    J. Schons

    1995-12-01

    Full Text Available As poliaminas, putrescina (put, espermidina (spd e espermina (spm são amplamente distribuídas na natureza, desempenhando importante papel em vários eventos celulares. Considerando que as poliaminas estão envolvidas no processo embriogênico, torna-se importante conhecer as bases para estas alterações no metabolismo. O objetivo do presente trabalho foi observar os teores de poliaminas durante as diferentes fases da embriogênese somátka da cenoura. As análises foram realizadas, através da modificação do método de Flores e Galston a cada 96 horas durante 50 dias da cultura de células em suspensão. As células foram obtidas a partir de calos e inoculadas em meio de Murashige & Skoog (MS, modificado e acrescido de 0,2 mg/l de 2,4-D e 0,1 mg/l de cinetina durante os primeiros 14 dias da cultura, sendo que no restante do período permaneceram em meio MS desprovido de fiorreguladores. Os teores de poliaminas oscilaram durante todo o processo embriogênico, sendo que a putrescina foi a que apresentou maior acúmulo. Estes resultados sugerem que os níveis de espermidina e espermina são reduzidos em relação a putrescina devido a intensa utilização da spd e spm no processo de divisão e diferenciação celular, enquanto que a put parece ter apenas a função de sintetizar as outras duas amidas.The polyamines, putrescine (Put, Spermidine (Spd and Spermine (Spm are widely present in nature, performing an important role in various cellular events. Considering that polyamines take part of the embryogenic process, it is important to know the bases for these alterations in the metabolism. The objective of the present study was to observe the contents of polyamines during the different phases of somatic embryogenesis of carrot. Analyses were carried out, according to a modification of the method developed by Flores & Galston every 96 hours during 50 days from the culture of cell suspensions. The cells were provided from callus and inoculated in Murashige & Skoog (MS medium which had been modified and added with 0.2 mg/l of 2,4-D and 0.1 mg/l of Idnetin during the first 14 days, whereas for the other days, they were kept in MS medium deprived of phytoregulators. The contents of polyamines varied during all the embryogenic process, when putrescine showed the most accumulated. These results suggest that the levels of Spermidine and spermine are reduced in relation to putrescine due to the intense use of Spd and Spm in the process of cell division and differentiation, whereas Put seems to have only the function of synthetizing the other two amines.

  20. Bioaccessibility of Polyphenols from Plant-Processing Byproducts of Black Carrot (Daucus carota L.).

    Science.gov (United States)

    Kamiloglu, Senem; Capanoglu, Esra; Bilen, Fatma Damla; Gonzales, Gerard Bryan; Grootaert, Charlotte; Van de Wiele, Tom; Van Camp, John

    2016-03-30

    Plant-processing byproducts of black carrot represent an important disposal problem for the industry; however, they are also promising sources of polyphenols, especially anthocyanins. The present study focused on the changes in polyphenols from black carrot, peel, and pomace during in vitro gastrointestinal digestion. Total phenolic content (TPC), total monomeric anthocyanin content (TMAC), and total antioxidant capacity (TAC) were determined using spectrophotometric methods, whereas identification and quantification of polyphenols were carried out using UPLC-ESI-MS(E) and HPLC-DAD, respectively. TPC, TMAC, and TAC significantly decreased (23-82%) as a result of in vitro gastrointestinal digestion. Nevertheless, the amount of pomace anthocyanins released at all stages of in vitro gastrointestinal digestion was higher than black carrot anthocyanins, suggesting that pomace may be a better source of bioaccessible anthocyanins. Overall, the current study highlighted black carrot byproducts as substantial sources of polyphenols, which may be used to enrich food products.

  1. Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States

    Science.gov (United States)

    Studies of gene flow between crops and their wild relatives have implications for both management practices for farming and breeding as well as understanding the risk of transgene escape. These types of studies may also yield insight into population dynamics and the evolutionary consequences of gene...

  2. Analysis of texture in baby carrot (Daucus carota) subjected to the process of ionizing radiation

    Energy Technology Data Exchange (ETDEWEB)

    Nunes, Thaise C.F.; Rogovschi, Vladimir D.; Fabbri, Adriana D.T.; Sagretti, Juliana M.A.; Sabato, Susy F., E-mail: ssabato@ipen.br [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)

    2011-07-01

    The carrot is a vegetable of great economic value due to its versatility in the food industry and can be used as raw or minimally processed vegetable or aggregating value to the product, transforming the fresh carrots in baby carrots. It is well known that the application of gamma radiation in food may help in maintaining the quality of food. The aim of this study was to analyze the effects of the low doses of ionizing radiation on texture of minimally processed baby carrot after the processing in a Multipurpose {sup 60}Co irradiator. It can be concluded that the treatment with low doses of gamma radiation keep the quality of fresh-cut baby carrot. (author)

  3. Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors

    Science.gov (United States)

    Antioxidants and antioxidant capacity of seven colored carrots were determined. Five anthocyanins, chlorogenic acid, caffeic acid, and four carotenoids, were quantified by HPLC. Total phenolic content was determined by the Folin-Ciocalteau method. Antioxidant capacities of the hydrophilic and hyd...

  4. Correlations between Polyacetylene Concentrations in Carrot (Daucus carota L.) and Various Soil Parameters

    OpenAIRE

    Lars Kjellenberg; Eva Johansson; Karl-Erik Gustavsson; Artur Granstedt; Marie E. Olsson

    2016-01-01

    This study assessed the concentrations of three falcarinol-type polyacetylenes (falcarinol, falcarindiol, falcarindiol-3-acetate) in carrots and the correlations between these and different soil traits. A total of 144 carrot samples, from three different harvests taken a single season, were analysed in terms of their polyacetylene concentrations and root development. On one of the harvesting occasions, 48 soil samples were also taken and analysed. The chemical composition of the soil was foun...

  5. Correlations between Polyacetylene Concentrations in Carrot (Daucus carota L.) and Various Soil Parameters.

    Science.gov (United States)

    Kjellenberg, Lars; Johansson, Eva; Gustavsson, Karl-Erik; Granstedt, Artur; Olsson, Marie E

    2016-08-31

    This study assessed the concentrations of three falcarinol-type polyacetylenes (falcarinol, falcarindiol, falcarindiol-3-acetate) in carrots and the correlations between these and different soil traits. A total of 144 carrot samples, from three different harvests taken a single season, were analysed in terms of their polyacetylene concentrations and root development. On one of the harvesting occasions, 48 soil samples were also taken and analysed. The chemical composition of the soil was found to influence the concentrations of falcarinol-type polyacetylenes in carrots. When the total soil potassium level was 200 mg/100 g soil, the concentration of falcarindiol (FaDOH) in the carrot samples was 630 μg/g DW, but when carrots were grown in soil with a total potassium level of 300 mg/100 g soil, the FaDOH concentration in the carrots fell to 445 μg/g DW. Carrots grown in soils generally low in available phosphorus exhibited higher levels of falcarindiol if the soil was also low in available magnesium and calcium. The concentrations of polyacetylenes in carrots were positively correlated with total soil phosphorus level, but negatively correlated with total soil potassium level. Of the three polyacetylenes analysed, FaDOH concentrations were influenced most by changes in soil chemical composition.

  6. Correlations between Polyacetylene Concentrations in Carrot (Daucus carota L. and Various Soil Parameters

    Directory of Open Access Journals (Sweden)

    Lars Kjellenberg

    2016-08-01

    Full Text Available This study assessed the concentrations of three falcarinol-type polyacetylenes (falcarinol, falcarindiol, falcarindiol-3-acetate in carrots and the correlations between these and different soil traits. A total of 144 carrot samples, from three different harvests taken a single season, were analysed in terms of their polyacetylene concentrations and root development. On one of the harvesting occasions, 48 soil samples were also taken and analysed. The chemical composition of the soil was found to influence the concentrations of falcarinol-type polyacetylenes in carrots. When the total soil potassium level was 200 mg/100 g soil, the concentration of falcarindiol (FaDOH in the carrot samples was 630 μg/g DW, but when carrots were grown in soil with a total potassium level of 300 mg/100 g soil, the FaDOH concentration in the carrots fell to 445 μg/g DW. Carrots grown in soils generally low in available phosphorus exhibited higher levels of falcarindiol if the soil was also low in available magnesium and calcium. The concentrations of polyacetylenes in carrots were positively correlated with total soil phosphorus level, but negatively correlated with total soil potassium level. Of the three polyacetylenes analysed, FaDOH concentrations were influenced most by changes in soil chemical composition.

  7. Polyacetylenes from carrots (Daucus carota) improve glucose uptake in vitro in adipocytes and myotubes.

    Science.gov (United States)

    El-Houri, Rime B; Kotowska, Dorota; Christensen, Kathrine B; Bhattacharya, Sumangala; Oksbjerg, Niels; Wolber, Gerhard; Kristiansen, Karsten; Christensen, Lars P

    2015-07-01

    A dichloromethane (DCM) extract of carrot roots was found to stimulate insulin-dependent glucose uptake (GU) in adipocytes in a dose dependent manner. Bioassay-guided fractionation of the DCM extract resulted in the isolation of the polyacetylenes falcarinol and falcarindiol. Both polyacetylenes were able to significantly stimulate basal and/or insulin-dependent GU in 3T3-L1 adipocytes and porcine myotube cell cultures in a dose-dependent manner. Falcarindiol increased peroxisome proliferator-activated receptor (PPAR)γ-mediated transactivation significantly at concentrations of 3, 10 and 30 μM, while PPARγ-mediated transactivation by falcarinol was only observed at 10 μM. Docking studies accordingly indicated that falcarindiol binds to the ligand binding domain of PPARγ with higher affinity than falcarinol and that both polyacetylenes exhibit characteristics of PPARγ partial agonists. Falcarinol was shown to inhibit adipocyte differentiation as evident by gene expression studies and Oil Red O staining, whereas falcarindiol did not inhibit adipocyte differentiation, which indicates that these polyacetylenes have distinct modes of action. The results of the present study suggest that falcarinol and falcarindiol may represent scaffolds for novel partial PPARγ agonists with possible antidiabetic properties.

  8. Effects of harvesting date and storage on the amounts of polyacetylenes in carrots, Daucus carota.

    Science.gov (United States)

    Kjellenberg, Lars; Johansson, Eva; Gustavsson, Karl-Erik; Olsson, Marie E

    2010-11-24

    The amounts of three main polyacetylenes in carrots; falcarinol, falcarindiol, and falcarindiol-3-acetate, were determined by HPLC, during three seasons, in carrots harvested several times per season and at different locations in Sweden. The amounts of falcarindiol first decreased from a relatively high level and then increased later in the harvest season. The amounts of falcarindiol-3-acetate showed similar variations, whereas the amounts of falcarinol did not exhibit any significant variation during the harvest season. During storage the amount of polyacetylenes leveled off, increasing in samples initially low and decreasing in samples initially high in polyacetylenes. The amounts of all polyacetylenes varied significantly due to external factors and between stored and fresh samples. This variation opens up possibilities to achieve a chemical composition of polyacetylenes at harvest that minimizes the risk of bitter off-taste and maximizes the positive health effects reported in connection with polyacetylenes in carrots.

  9. Uji Daya Terima Dan Nilai Gizi Mi Basah Dengan Penambahan Tempe Dan Wortel (Daucus carota L.)

    OpenAIRE

    Gultom, Yohana Tetty

    2014-01-01

    Noodle is one of the most popular foodstaple in the community. Nowdays, the noodle was made as a replacement food of other staple foods such as rice. Generally, raw material of noodle is flour. However, the flour can also be modified with other foods such as tempe and carrot. Based on its nutrient composition, tempe and carrot are potential as a source of nutrition, which contains proteins, fat, calcium, phosphorus, iron, vitamin A, tiamin, vitamin C, riboflavin, niasin and fiber. The purpose...

  10. A Study on the use of carrot juice in the tissue culture of Daucus carota

    African Journals Online (AJOL)

    Administrator

    ISSN 1684–5315 © 2004 Academic Journals. Full Length Research ... environment and the chemical media for in vitro culture. Research ... Cocos nucifera (coconut milk) in their culture medium. Coconut milk ..... embryos. Science 94: 350-352.

  11. Monoclonal Antibodies that Recognize Proteins Unique to Somatic Embryos of Daucus carota.

    Science.gov (United States)

    1985-01-01

    For enzyme immunoassay (EIA), 6 M urea extracts of the lyophilized tissues were prepared (-., personal communication), their protein content was...of hybridoma supernates on EIA plates coated with 6 M urea extracts (1 mg protein/well) of lyophilized callus cells (A), somatic embryo cells (B), and...101Ali reacts with denatured proteins that were identified as LHCP by their apparent molecular weight and reaction with rabbit antisera to maize LHCP

  12. Biofortification of Carrot (Daucus carota L.) with Iodine and Selenium in a Field Experiment.

    Science.gov (United States)

    Smoleń, Sylwester; Skoczylas, Łukasz; Ledwożyw-Smoleń, Iwona; Rakoczy, Roksana; Kopeć, Aneta; Piątkowska, Ewa; Bieżanowska-Kopeć, Renata; Koronowicz, Aneta; Kapusta-Duch, Joanna

    2016-01-01

    The low content of iodine (I) and selenium (Se) forms available to plants in soil is one of the main causes of their insufficient transfer in the soil-plant-consumer system. Their deficiency occurs in food in the majority of human and farm animal populations around the world. Both elements are classified as beneficial elements. However, plant response to simultaneous fertilization with I and Se has not been investigated in depth. The study (conducted in 2012-2014) included soil fertilization of carrot cv. "Kazan F1" in the following combinations: (1) Control; (2) KI; (3) KIO3; (4) Na2SeO4; (5) Na2SeO3; (6) KI+Na2SeO4; (7) KIO3+Na2SeO4; (8) KI+Na2SeO3; (9) KIO3+Na2SeO3. I and Se were applied twice: before sowing and as top-dressing in a total dose of 5 kg I⋅ha(-1) and 1 kg Se⋅ha(-1). No negative effects of I and Se fertilization were noted with respect to carrot yield. Higher accumulation and the uptake by leaves and storage roots of I and Se were obtained after the application of KI than KIO3, as well as of Na2SeO4 than Na2SeO3, respectively. Transfer factor values for leaves and roots were about a dozen times higher for Se than for I. Selenomethionine content in carrot was higher after fertilization with Na2SeO4 than with Na2SeO3. However, it was the application of Na2SeO3, KI+Na2SeO3 and KIO3+Na2SeO3 that resulted in greater evenness within the years and a higher share of Se from selenomethionine in total Se in carrot plants. Consumption of 100 g f.w. of carrots fertilized with KI+Na2SeO3 and KIO3+Na2SeO3 can supply approximately or slightly exceed 100% of the Recommended Daily Allowance for I and Se. Moreover, the molar ratio of I and Se content in carrot fertilized with KI+Na2SeO3 and KIO3+Na2SeO3 was the best among the research plots.

  13. Biofortification of Carrot (Daucus carota L. with Iodine and Selenium in a Field Experiment

    Directory of Open Access Journals (Sweden)

    Sylwester eSmoleń

    2016-05-01

    Full Text Available The low content of iodine (I and selenium (Se forms available to plants in soil is one of the main causes of their insufficient transfer in the soil-plant-consumer system. Their deficiency occurs in food in the majority of human and farm animal populations around the world. Plant response to simultaneous fertilization with I and Se has not been investigated in depth. Neither I nor Se is essential for higher plants but can be considered as a beneficial element. The study (conducted in 2012–2014 included soil fertilization of carrot cv. Kazan F1 in the following combinations: 1. Control; 2. KI; 3. KIO3; 4. Na2SeO4; 5. Na2SeO3; 6. KI+Na2SeO4; 7. KIO3+Na2SeO4; 8. KI+Na2SeO3; 9. KIO3+Na2SeO3. I and Se were applied twice: before sowing and as top-dressing in a total dose of 5 kg I•ha−1 and 1 kg Se•ha−1. No negative effects of I and Se fertilization were noted with respect to carrot yield. Higher accumulation and the uptake by leaves and storage roots of I and Se were obtained after the application of KI than KIO3, as well as of Na2SeO4 than Na2SeO3, respectively. Transfer factor values for leaves and roots were about a dozen times higher for Se than for I. Selenomethionine content in carrot was higher after fertilization with Na2SeO4 than with Na2SeO3. However, it was the application of Na2SeO3, KI+Na2SeO3 and KIO3+Na2SeO3 that resulted in greater evenness within the years and a higher share of Se from selenomethionine in total Se in carrot plants. Consumption of 100 g f.w. of carrots fertilized with KI+Na2SeO3 and KIO3+Na2SeO3 can supply approximately or slightly exceed 100% of the Recommended Daily Allowance for I and Se. Moreover, the molar ratio of I and Se content in carrot fertilized with KI+Na2SeO3 and KIO3+Na2SeO3 was the best among the research plots.

  14. Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid.

    Science.gov (United States)

    Spooner, David M; Ruess, Holly; Iorizzo, Massimo; Senalik, Douglas; Simon, Philipp

    2017-02-01

    We explored the phylogenetic utility of entire plastid DNA sequences in Daucus and compared the results with prior phylogenetic results using plastid and nuclear DNA sequences. We used Illumina sequencing to obtain full plastid sequences of 37 accessions of 20 Daucus taxa and outgroups, analyzed the data with phylogenetic methods, and examined evidence for mitochondrial DNA transfer to the plastid (DcMP). Our phylogenetic trees of the entire data set were highly resolved, with 100% bootstrap support for most of the external and many of the internal clades, except for the clade of D. carota and its most closely related species D. syrticus. Subsets of the data, including regions traditionally used as phylogenetically informative regions, provide various degrees of soft congruence with the entire data set. There are areas of hard incongruence, however, with phylogenies using nuclear data. We extended knowledge of a mitochondrial to plastid DNA insertion sequence previously named DcMP and identified the first instance in flowering plants of a sequence of potential nuclear genome origin inserted into the plastid genome. There is a relationship of inverted repeat junction classes and repeat DNA to phylogeny, but no such relationship with nonsynonymous mutations. Our data have allowed us to (1) produce a well-resolved plastid phylogeny of Daucus, (2) evaluate subsets of the entire plastid data for phylogeny, (3) examine evidence for plastid and nuclear DNA phylogenetic incongruence, and (4) examine mitochondrial and nuclear DNA insertion into the plastid. © 2017 Spooner et al. Published by the Botanical Society of America. This work is licensed under a Creative Commons public domain license (CC0 1.0).

  15. Multivariate analysis of morphological diversity among closely related Daucus species and subspecies in Tunisia

    Science.gov (United States)

    The genus Daucus includes about 20-25 species worldwide. Northern Africa represents a major center of diversity of Daucus, with Tunisia thought to contain 11 species and seven subspecies. We assessed morphological diversity from a Daucus germplasm collection of 103 accessions at the National Gene Ba...

  16. Enzymatic reduction of 4-(dimethylamino)benzaldehyde with carrot bits (Daucus carota): a simple experiment for understanding biocatalysis; Reducao enzimatica do 4-(dimetilamino)benzaldeido com pedacos de cenoura (Daucus carota): um experimento simples na compreensao da biocatalise

    Energy Technology Data Exchange (ETDEWEB)

    Omori, Alvaro Takeo; Portas, Viviane Barbosa; Oliveira, Camila de Souza de, E-mail: alvaro.omori@ufabc.edu.br [Centro de Ciencias Naturais e Humanas, Universidade Federal do ABC, SP (Brazil)

    2012-07-01

    The present paper describes a simple, low-costly and environmentally friendly procedure for reduction of 4-(dimethylamino)benzaldehyde using carrot bits in water. This interdisciplinary experiment can be used to introduce the concepts of biocatalysis and green chemistry to undergraduate students. (author)

  17. INFLUENCE OF AMMONIACAL FERTILIZERS IN THE MAIN ROOT BRANCHING OF CARROT (Daucus carota L. INFLUÊNCIA DOS ADUBOS AMONIACAIS NA RAMIFICAÇÃO DA RAIZ PRINCIPAL DA CENOURA (Daucus carota L.

    Directory of Open Access Journals (Sweden)

    Peter Ernst Sonnenberg

    2007-09-01

    Full Text Available

    Misshape of carrot roots can be incited by soil agents, like badly prepared soil and nematodes or by ammonium fertilizers. RALEIGH (Knott, cited by SILVA, found that ammonium fertilizers can kill the root and consequently cause malformation. The preference of sodium nitrate or other non-ammonium fertilizers is widely spread in Brazilian literature about carrot. MALAVOLTA (1967 even recommends only small quantities of manure to prevent root damage. REGINA (1964 advises against use of ammonium sulphate and other ammonium fertilizers for the same reason. CAMARGO (1963 also prefers sodium nitrate but mentions the possibility of substitution by ammonium sulphate, too. Although, it was impossible to find any original experimental information about, in Brazilian literature. The sodium nitrate is imported by Brazil from Chile and is therefore almost five times more expensive than ammonium sulphate, in spite of its lower nitrogen content. This trial investigated four sources of nitrogen: ammonium sulphate, sodium nitrate, urea and manure. The quantities applied were higher than MALAVOLTA recommends for carrot. The results don't show any significant difference between treatments, neither in ramification frequence nor in yield. The variety used was a cone-shaped carrot, named London. Other varieties possibly are susceptible to malformation of root by ammonium fertilizers. This will be investigated in further experiments.

    A deformação da raiz da cenoura pode ser causada por diversos agentes do solo, como nematóides, solo mal preparado e, ainda adubos ricos em amônio. Segundo RALEIGH, citado por Silva, adubos amoniacais podem matar a ponta radicular, causando assim deformação da raiz. Na literatura brasileira sobre adubação de cenoura, é muito difundida a preferência de nitrato de sódio ou outros adubos não amoniacais. Em Goiânia, o salitre do Chile é vendido apenas por quilo, custando quase cinco vezes o preço do sulfato de amônio. Neste trabalho, realizado na Escola de Agronomia e Veterinária da Universidade Federal de Goiás, foram comparadas quatro fontes de nitrogênio: sulfato de amônio, salitre do Chile, uréia e esterco de gado. Utilizou-se uma variedade de cenoura de raiz cônica, chamada London. Nenhuma diferença significante foi encontrada quanto à deformação ou à produção, entre os tratamentos. Possivelmente outras variedades são susceptíveis à deformação pelos amoniacais o que será objeto de outro experimento.

    PALAVRAS-CHAVE: Sulfato de amônio; salitre do chile.

  18. The monoterpenes of Artemisia tridentata ssp. vaseyana, Artemisia cana ssp. viscidula and Artemisia tridentata ssp. spiciformis.

    Science.gov (United States)

    Gunawardena, K; Rivera, S B; Epstein, W W

    2002-01-01

    Monoterpenes from three different members of the Anthemideae family, Artemisia tridentata ssp. vaseyana, Artemisia cana ssp. viscidula and Artemisia tridentata ssp. spiciformis were isolated and their structures determined using spectroscopic techniques. A total of 26 irregular and regular monoterpenes were identified. Among these, 20 had previously been identified in the Anthemideae family. Of the remaining six, four were known, but previously unidentified in this family. 2,2-Dimethyl-6-isopropenyl-2H-pyran, 2,3-dimethyl-6-isopropyl-4H-pyran and 2-isopropenyl-5-methylhexa-trans-3,5-diene-1-ol were isolated from both A. tridentata ssp. vaseyana and A. cana ssp. viscidula. The irregular monoterpene 2,2-dimethyl-6-isopropenyl-2H-pyran has a carbon skeleton analogous to the biologically important triterpene squalene. Two additional irregular monoterpenes, artemisia triene and trans-chrysanthemal were isolated from A. cana ssp. viscidula and lavandulol was isolated from A. tridentata ssp. spiciformis. This is the first time a compound possessing a lavandulyl-skeletal type has been found in the Anthemideae family.

  19. Genetic structure in cultivated and wild carrots (¤Daucus carota¤ L.) revealed by AFLP analysis

    DEFF Research Database (Denmark)

    Shim, S.I.; Bagger Jørgensen, Rikke

    2000-01-01

    Genetic variation within and among five Danish populations of wild carrot and five cultivated varieties was investigated using amplified fragment length polymorphism (AFLP). Ten AFLP primer combinations produced 116 polymorphic bands. Based on the marker data an UPGMA-cluster analysis and princip...

  20. Influence of Cultivar and UGmax on Antioxidative Properties of Carrot Roots (Daucus Carota L. and their Stability During Freezing Process

    Directory of Open Access Journals (Sweden)

    Keutgen Anna J.

    2014-12-01

    Full Text Available In the present experiment, the significance of cultivar (convention-al and coloured and of the application of the soil fertility enhancer UGmax on health-promoting properties of carrot roots subjected to the freezing process of carrot cubes after water blanching was investigated. The selection of cultivar turned out to be highly signif-icant with respect to the development of health-promoting properties of carrot roots. The highest antioxidant properties were found in the purple cultivar ‘Deep Purple’. Its mean antioxidant capacity accounted for 5.31 mmol Fe+2 · kg–1 f.m. Essential for health-promoting properties were the contents of anthocyanins (R2 = 0.83, chlorogenic acid (R2 = 0.81 and total polyphenolics (R2 = 0.71. The application of the biological agent UGmax improved the qual-ity of carrot significantly, increasing the content of total carotenoids and reducing the losses of ascorbic acid during processing. The freezing process negatively influenced the antioxidative properties of carrot irrespective of cultivar and applied agro-technique (use of UGmax, especially in the case of water-soluble antioxidants such as anthocyanins and ascorbic acid.

  1. In vitro bioaccessibility of β-carotene, Ca, Mg and Zn in landrace carrots (Daucus carota, L.).

    Science.gov (United States)

    Zaccari, Fernanda; Cabrera, María Cristina; Ramos, Ana; Saadoun, Ali

    2015-01-01

    Four landrace carrots ("Becaria", "CRS", "González" and "Rodríguez") and two marketable cultivars (Kuroda and Brasilia), raw and steamed, were characterised by the total content of β-carotene Ca, Mg and Zn, in vitro bioaccessibility and by colour and were evaluated to determine the effect of particle size in nutrient bioaccessibility. Steaming increased the content of β-carotene extracted from "CRS" and Brasilia (29% and 75%) and decreased the content of β-carotene extracted from "CRS" by 23% in "Rodríguez." In addition, steaming caused a loss of Ca (21%) but did not change the amount of Mg and Zn. The bioaccessibility of β-carotene in raw and pulped carrots was very low (<0.5%). Furthermore, steaming and a smaller particle size increased the bioaccessibility of β-carotene by 3-16 times. Additionally, cooking increased the in vitro bioaccessibility of Ca and Zn but had no effect on Mg. Moreover, homogenisation increased the bioaccessibility by 20% in Ca, 17% in Mg, and 10% in Zn compared to pulping.

  2. Production of edible coating based on fruit and vegetable residues: application on minimally processed carrot (Daucus carota L.

    Directory of Open Access Journals (Sweden)

    Ana Elizabeth Cavalcante Fai

    2015-03-01

    Full Text Available The application of edible coatings obtainable from alternative biodegradable materials has gained attention as a promising treatment to prolong the shelf-life of fresh-cut vegetables. Thus, this work aimed to develop a biodegradable coating based on fruit and vegetable residues flour. Immersion coating strategy was studied on the quality of minimally fresh-cut carrots during refrigeration storage by means of weight loss, color variation, pH, titratable acidity and soluble solids content. Better performance was obtained for coated carrots, which exhibited a tendency to have lower whiteness index than uncoated counterparts and enhanced overall quality. Despite a drop in color saturation expressed by chroma values (varying from 59 to 46 was observed, color index presented a positive value for all samples (varying from 13 to 15 indicating orange color preservation throughout storage. Although color parameter was influenced by coating treatment, minor modifications occur over storage concerning weight loss, pH, titratable acidity and soluble content. Results obtained demonstrated the potential of the fruit and vegetable residues flour for edible coatings formulation. Practical application on minimally processed carrots supported its suitability to be used as an alternative coating material and constitute a motivating route to evaluate and optimize this alternative preservation technique.

  3. Cloning of lea cDNA fragment of carrot (Daucus carota L.) and analysis of its expression features

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Addition of concentrated sucrose to MS culture arrests the development of carrot somatic embryo at the stage of cotyledon embryo and, with the sucrose concentration restored to normal level, the embryo thus arrested is reactivated into post-embryonic development. Using the method of RT-PCR, the cDNA fragment of a new member of the Dc3 family of lea has been obtained from carrot somatic embryo under regulated state. As revealed by Northern blotting, strong expression has been observed in carrot somatic embryo under regulated state but the expression was much reduced 12 h after deregulation, and nearly disappeared 24 h after. Based on this finding as well as results of related studies, it is surmised that changing the sucrose concentration in culture enabled carrot somatic embryo under suspension culture to undergo a specific course of development which is comparable to the dormancy-germination process of seeds.

  4. Determination of polyacetylenes in carrot roots (Daucus carota L.) by high-performance liquid chromatography coupled with diode array detection.

    Science.gov (United States)

    Christensen, Lars P; Kreutzmann, Stine

    2007-03-01

    A new high-performance liquid chromatographic method with diode array detection was developed for the separation and simultaneous determination of the carrot polyacetylenes falcarindiol (FaDOH), falcarindiol 3-acetate (FaDOAc) and falcarinol (FaOH) in carrot root extracts. The optimal chromatographic conditions were achieved on a C18 column with a linear gradient elution of water and acetonitrile as mobile phases, at the flow rate of 1.0 mL/min. All calibration curves of the three carrot polyacetylenes showed good linear regression (R2 > 0.998) within the test ranges. The developed method showed good precision for quantification of all polyacetylenes with overall intraday and interday variation of less than 3.3% and with average recovery rates of 99.2, 96.8 and 99.7% for FaDOH, FaDOAc and FaOH, respectively. The LOD (S/N = 3) and LOQ (S/N = 10) were less than 0.19 and 0.42 microg/mL, respectively, for all analytes. The established method was successfully used to determine the spatial distribution of FaDOH, FaDOAc and FaOH in six carrot genotypes (Bolero, Independent, Line 1, Mello Yello, Purple Haze and Tornado) by analysing peeled carrots and the corresponding peels for these polyacetylenes.

  5. DcE2F, a functional plant E2F-like transcriptional activator from Daucus carota

    DEFF Research Database (Denmark)

    Albani, D; Mariconti, L; Ricagno, S;

    2000-01-01

    In animal cells the progression of the cell cycle through G(1)/S transition and S phase is under the control of the pRB/E2F regulatory pathway. The E2F transcription factors are key activators of genes coding for several regulatory proteins and for enzymes involved in nucleotide and DNA synthesis....... In this report we have detected the presence of E2F-like DNA binding activities in carrot nuclear extracts, and we have isolated a carrot cDNA (DcE2F) encoding a plant E2F homologue. The DcE2F gene is expressed in proliferating cells and is induced during the G(1)/S transition of the cell cycle. Supershift...... assays have revealed that DcE2F is a functional transcription factor that can transactivate, together with a DP partner, an E2F-responsive reporter gene in both plant and mammalian cells....

  6. Genomic identification of WRKY transcription factors in carrot (Daucus carota) and analysis of evolution and homologous groups for plants.

    Science.gov (United States)

    Li, Meng-Yao; Xu, Zhi-Sheng; Tian, Chang; Huang, Ying; Wang, Feng; Xiong, Ai-Sheng

    2016-03-15

    WRKY transcription factors belong to one of the largest transcription factor families. These factors possess functions in plant growth and development, signal transduction, and stress response. Here, we identified 95 DcWRKY genes in carrot based on the carrot genomic and transcriptomic data, and divided them into three groups. Phylogenetic analysis of WRKY proteins from carrot and Arabidopsis divided these proteins into seven subgroups. To elucidate the evolution and distribution of WRKY transcription factors in different species, we constructed a schematic of the phylogenetic tree and compared the WRKY family factors among 22 species, which including plants, slime mold and protozoan. An in-depth study was performed to clarify the homologous factor groups of nine divergent taxa in lower and higher plants. Based on the orthologous factors between carrot and Arabidopsis, 38 DcWRKY proteins were calculated to interact with other proteins in the carrot genome. Yeast two-hybrid assay showed that DcWRKY20 can interact with DcMAPK1 and DcMAPK4. The expression patterns of the selected DcWRKY genes based on transcriptome data and qRT-PCR suggested that those selected DcWRKY genes are involved in root development, biotic and abiotic stress response. This comprehensive analysis provides a basis for investigating the evolution and function of WRKY genes.

  7. Aspectos bioquímicos y moleculares de la interacción sclerotinia sclerotiorum-Daucus Carota

    OpenAIRE

    Bertinetti, Cristina M.

    1996-01-01

    Las plantas están expuestas a microorganismos en todos los estadios de su ciclo de vida. Si bien cada especie vegetal solo es susceptible a un número reducido de ellos, en condiciones fisiológicas adecuadas, las infecciones pueden ejercer sobre los sistemas graves daños y pérdidas desvastadoras de las cosechas. Para prevenir y controlar las infecciones, las plantas han desarrollado mecanismos de resistencia basados en la capacidad para mantener o crear un ambiente desfavorable para el crecimi...

  8. Ultraviolet-C light effect on physicochemical, bioactive, microbiological, and sensorial characteristics of carrot (Daucus carota) beverages.

    Science.gov (United States)

    Hernández-Carranza, Paola; Ruiz-López, Irving Israel; Pacheco-Aguirre, Francisco Manuel; Guerrero-Beltrán, José Ángel; Ávila-Sosa, Raúl; Ochoa-Velasco, Carlos Enrique

    2016-09-01

    The aim of this research was to evaluate the effect of ultraviolet-C light on physicochemical, bioactive, microbial, and sensory characteristics of carrot beverages. Beverages were formulated with different concentrations of carrot juice (60, 80, and 100% [v/v]) and treated with ultraviolet-C light at different flow rates (0, 0.5, 3.9, and 7.9 mL s(-1)) and times (5, 10, 15, 20, and 30 min), equivalent to ultraviolet-C dosages of 13.2, 26.4, 39.6, 52.8, and 79.2 J cm(-2) Total soluble solids, pH, and titratable acidity were not affected by the ultraviolet-C light treatment. Ultraviolet-C light significantly affected (p C light treatment. Microbial kinetics showed that mesophiles were mostly reduced at high flow rates in carrot beverages with 60% of juice. Maximum logarithmic reductions for mesophiles and total coliforms were 3.2 ± 0.1 and 2.6 ± 0.1, respectively, after 30 min of ultraviolet-C light processing. Beverages were well accepted (6-7) by judges who did not perceive the difference between untreated and Ultraviolet-C light treated beverages.

  9. Isolation and characterization of a novel cis-acting sequences regulating root-specific gene from Daucus carota L.

    Institute of Scientific and Technical Information of China (English)

    LIU Yan; GUO Chang-an; REN Haibo; CHEN Fan

    2004-01-01

    Aquaporins are ubiquitous channel proteins that facilitate the transport of water across cell membranes. Most of aquaporins are represent in more than one tissues, but some of them performed highest in roots. They are belived to participate in water transport. DcRB7, a member of the aquaporin family, was isolated from somatic embryos of carrot and identified as a homologous gene of TobRB7. Further studies showed that the expression of DcRB7 was particular in carrot root. To investigate the transcription regulation of DcRB7, a 650-bp upstream sequence of DcRB7 was isolated by inverse PCR, and was fused to the β-glucuronidase (GUS) report gene. After the recombined vectors were transformed into tobacco, the expression pattern was performed by histochemical staining and the quantitative analysis of GUS activity. The results indicated that the cis-acting element of DcRB7 gene directs GUS expression not only as root-specific but also as drought inducible.

  10. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus

    Science.gov (United States)

    Next generation sequencing is helping to solve the data insufficiency problem hindering well-resolved dominant gene phylogenies. We used Roche 454 technology to obtain DNA sequences from 93 nuclear orthologs, dispersed throughout all linkage groups of Daucus. Of these 93 orthologs, ten were designed...

  11. Technical Analysis of SSP-21 Protocol

    Energy Technology Data Exchange (ETDEWEB)

    Bromberger, S. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2017-06-09

    As part of the California Energy Systems for the Twenty-First Century (CES-21) program, in December 2016 San Diego Gas and Electric (SDG&E) contracted with Lawrence Livermore National Laboratory (LLNL) to perform an independent verification and validation (IV&V) of a white paper describing their Secure SCADA Protocol for the Twenty-First Century (SSP-21) in order to analyze the effectiveness and propriety of cryptographic protocol use within the SSP-21 specification. SSP-21 is designed to use cryptographic protocols to provide (optional) encryption, authentication, and nonrepudiation, among other capabilities. The cryptographic protocols to be used reflect current industry standards; future versions of SSP-21 will use other advanced technologies to provide a subset of security services.

  12. Anatomical studies of Juniperus communis L. ssp. communis and J. communis L. ssp. nana Syme

    NARCIS (Netherlands)

    Miller, H.J.

    1974-01-01

    The wood descriptions of Juniperus communis L. ssp. communis are compared with those of earlier authors. The average and maximum tracheid lengths and the ray height distribution frequencies offer a means of separating the wood of the erect J. communis L. ssp. communis from that of the subspecies

  13. Anatomical studies of Juniperus communis L. ssp. communis and J. communis L. ssp. nana Syme

    NARCIS (Netherlands)

    Miller, H.J.

    1974-01-01

    The wood descriptions of Juniperus communis L. ssp. communis are compared with those of earlier authors. The average and maximum tracheid lengths and the ray height distribution frequencies offer a means of separating the wood of the erect J. communis L. ssp. communis from that of the subspecies nan

  14. Anatomical studies of Juniperus communis L. ssp. communis and J. communis L. ssp. nana Syme

    NARCIS (Netherlands)

    Miller, H.J.

    1974-01-01

    The wood descriptions of Juniperus communis L. ssp. communis are compared with those of earlier authors. The average and maximum tracheid lengths and the ray height distribution frequencies offer a means of separating the wood of the erect J. communis L. ssp. communis from that of the subspecies nan

  15. Control of Heterodera carotae, Ditylenchus dipsaci, and Meloidogyne javanica with Fumigant and Nonfumigant Nematicides.

    Science.gov (United States)

    Greco, N; Elia, F; Brandonisio, A

    1986-07-01

    Five field trials were conducted in Italy in 1983 and 1984 to test the efficacy of isazofos and benfuracarb in controlling Heterodera carotae on carrot, Ditylenchus dipsaci on onion, and Meloidogyne javanica on tomato. Methyl isothiocyanate (MIT) was tested against H. carotae and M. javanica. Single (10 kg a.i./ha) and split (5 + 5 kg a.i./ha) applications of isazofos gave yield increases of carrot and onion similar to those obtained with DD (300 liters/ha) and aldicarb (10 kg a.i./ha). Population densities of H. carotae in carrot roots at harvest and of M. javanica in tomato roots 2 months after transplanting were also suppressed by isazofos. Benfuracarb (10 kg a.i./ha increased onion yields in a field infested with D. dipsaci, but it was not effective against H. carotae or M. javanica. The efficacy of MIT at 400 and 600 liters/ha was similar to that of MIT + DD (Di-Trapex) at 300 liters/ha. Both nematicides inhibited hatch of H. carotae eggs and decreased the soil population density of M. javanica.

  16. Antioxidant Activity and Sensory Properties Carrot (Daucus carrota Soyghurt

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    Susiloningsih Enny Karti Basuki

    2016-01-01

    Full Text Available Carrot (Dascus carota L. is one of the more commonly used vegetables of human nutrition. It is rich in beta carotene, ascorbic acid, tocopherol and classified as vitaminized food. Combination of carrot juice and yoghurt produce a nutritionally balanced food. The aim of this study is to determine the best combination of carrot juice concentration and was fermentation duration. soyghurt was prepared in the laboratory scale production from soymilk and carrot juice was fermented with Streptococcus thermophillus and Lactobacillus bulgaris. Carrot soyghurt was prepared by blending soymilk with 10, 15 and 20% carrot juice before fermentation 14, 16 and 18 hours. The carrot soyghurt produced from 15% carrot juice and 16 hours fermentation were accepted of panelists, having 140 of taste score, 104 of flavour score, 118 of color score and 94.5 of viscocity, 6.52% of protein content, 1.51% of fat content and 52.49% of activity antioxidant.

  17. Estudio etnobotánico, arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana y A. mexicana ssp. xolocotziana Etnobotany, leaf architecture, and vegetative anatomy of Agastache mexicana ssp. mexicana and A. mexicana ssp. xolocotziana

    National Research Council Canada - National Science Library

    Magali A. Santillán-Ramírez; Ma. Edith López-Villafranco; Silvia Aguilar-Rodríguez; Abigail Aguilar-Contreras

    2008-01-01

    ... anatomía vegetativa de Agastache mexicana ssp. mexicana (toronjil morado) y A. mexicana ssp. xolocotziana (toronjil blanco), con la finalidad de que sean incluidas en la Farmacopea Herbolaria de los Estados Unidos Mexicanos...

  18. Identification of volatile organic compounds (VOCs in different colour carrot (Daucus carota L. cultivars using static headspace/gas chromatography/mass spectrometry

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    Zehra Güler

    2015-12-01

    Full Text Available Volatile organic compounds (VOCs as well as sugar and acid contents affect carrot flavour. This study compared VOCs in 11 carrot cultivars. Gas chromatography/mass spectrometry using static headspace technique was applied to analyse the VOCs. The number of VOCs per sample ranged from 17 to 31. The primarily VOCs identified in raw carrots with the exception of “Yellow Stone” were terpenes, ranging from 65 to 95%. The monoterpenes with values ranging from 31 to 89% were higher than those (from 2 to 15% of sesquiterpenes. Monoterpene α-terpinolene (with ranging from 23 to 63% and (--α-pinene (26%, and alcohol ethanol (35% was the main VOC in extracts from the nine carrot cultivars, “Purple” and “Yellow Stone”, respectively. As a result, among 16 identified monoterpenes, 7 monoterpenes (--α-pinene, (--β-pinene, β-myrcene, d-limonene, γ-terpinene, α-terpinolene and p-cymene constituted more than 60% of total VOCs identified in carrots including “Atomic Red”, “Nantes”, “Cosmic Purple”, “Red Samurai”, “Eregli Black”, “White Satin”, “Parmex” and “Baby Carrot”. Thus, these cultivars may advise to carrot breeders due to the beneficial effects of terpenes, especially monoterpenes on health.

  19. nfluences of ammonium-nitrate, food waste compost and bacterial fertilizer on soluble soil nitrogen forms and on the growth of carrot (Daucus Carota L.

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    Andrea Balla Kovács

    2014-04-01

    Full Text Available This paper reports a greenhouse study to compare the effects of food waste compost, bacterial fertilizer and their combination with the effect of mineral fertilizer on yield of carrot and the available nutrient content of soils. The study was conducted on calcareous chernozem and acidic sandy soils and consisted of 8 treatments in a randomized complete block design with four replications. The NH4NO3 resulted in reduced growing of carrot plant in sandy soil, and the treatment effect of mineral fertilizer was not observed significantly in chernozem soil. Sandy soil showed higher response of growth of carrot to food waste compost fertilization than chernozem soil. Sole application of EM-1 bacterial fertilizer did not have marked effect on yield parameters and sizes of roots. When EM-1 bacterial fertilizer was applied together with ammonium-nitrate or with compost in chernozem soil, the weights of roots and the sizes of roots in some cases became higher compared to the values of appropriate treatments without inoculation. In sandy soil the diameter of roots slightly increased when EM-1 bacterial fertilizer was applied with ammonium-nitrate and with ammonium-nitrate+compost combination compared to appropriate treatment without inoculation. In chernozem soil the maximum weights and sizes of roots were achieved with the combined treatment of ammonium-nitrate+compost+EM-1 bacterial fertilizer and in sandy soil with compost treatment. Our results of soluble nitrogen content of soils are in good agreement with yield parameters of carrot. Results suggest that food waste compost could be a good substitute for mineral fertilizer application in carrot production mainly in sandy soil. EM-1 bacterial fertilizer did not cause marked effect on yield and yield parameters of carrot plant, but its combination with other fertilizers promises a little bit higher yield or plant available nutrient in the soil. These effects do not clear exactly, so further studies are needed.

  20. 不同品种胡萝卜品质性状比较%Comparison of quality traits of different varieties of Daucus carota var .sativa DC

    Institute of Scientific and Technical Information of China (English)

    平阿敏; 赵翔宇; 李燕; 李梅兰

    2016-01-01

    观察几个国内和国外引进胡萝卜品种的生长特性,并进行外观品质和营养品质比较,以筛选出外观均匀整齐、鲜食品质好、营养价值高、适合本地种植的胡萝卜品种。试验结果表明,几个胡萝卜品种的生长周期在73 d到99 d之间;从根型看,‘彩虹胡萝卜’‘Hing’和‘纤指1号’比较好,‘Scarlet Nantes(USDA)’、‘Danvers Half Long’和‘彩虹胡萝卜’整齐度较高;在营养价值方面,‘Hing’品种的蛋白质和可溶性糖含量最高,每100 g胡萝卜中二者含量分别达到169.79 mg和2.48 g。就酸度而言,‘Scarlet Nantes A’以1.46 g位列第一;而‘纤指1号’的Vc含量达到9.36 mg·100 g -1;综合测评表明,‘纤指1号’的营养价值最高,‘Hing’品种次之。感官品尝结果表明,‘Hing’品种的口感更受大众喜爱,彩虹胡萝卜位列第二,D .T .Brow n最差。综合各种因素考虑,‘Hing’在此次试验中感官品尝口感最佳,外观品质与营养品质相关指标较高,适宜本地种植,可在生产上进行推广。%The growth cycle of several varieties either domestic or introduced from North Amarican was investigated and their appearance ,fresh‐eating and nutrition qualities were compared so as to screen a few varieties which were uniform and has good fresh‐eating quality ,high nutritional value and be suitable to be grown in the local region .The experi‐mental results showed that the growth period are from 73 to 99 days ;The root shape of‘Caihong’carrot ,‘Hing’ and‘Xianzhi yihao’ were better than others .The roots of ‘Scarlet Nantes(USDA)’ ,‘Danvers Half Long’ and‘Caihong carrot’ are more uniform among them .For the nutritional value ,,‘Hing’ is of highest content of protein and soluble sugar with 169.79 mg protein and 2.48 g soluble sugar in 100 g fresh carrot ,respectively .‘Scarlet Nantes A’ have the highest content of acidity with 1.46 g ,the content of vitamin C of ‘Xianzhi yihao'reached to 9.36 mg·100 g -1 .The comprehensive evaluation showed that‘Xianzhi yihao’ have the highest nutritional value and‘Hing’ is in the second . The tasting results showed that the flavor of ‘Hing’ is more popular and ‘Caihong carrot ’is in the second ,D .T . Brown is the worst .Take all factors to consideration ,‘Hing’ variety has good tasting and appearance quality as well as high nutritional value ,and relatively suitable to be grown in local region and can be popularized in production .

  1. Analysis of the Thermal Degradation of the Individual Anthocyanin Compounds of Black Carrot (Daucus carota L.): A New Approach Using High-Resolution Proton Nuclear Magnetic Resonance Spectroscopy.

    Science.gov (United States)

    Iliopoulou, Ioanna; Thaeron, Delphine; Baker, Ashley; Jones, Anita; Robertson, Neil

    2015-08-12

    The black carrot dye is a mixture of cyanidin molecules, the nuclear magnetic resonance (NMR) spectrum of which shows a highly overlapped aromatic region. In this study, the (1)H NMR (800 MHz) aromatic chemical shifts of the mixture were fully assigned by overlaying them with the characterized (1)H NMR chemical shifts of the separated compounds. The latter were isolated using reverse-phase high-performance liquid chromatography (RP-HPLC), and their chemical shifts were identified using (1)H and two-dimensional (2D) correlation spectroscopy (COSY) NMR spectroscopy. The stability of the black carrot mixture to heat exposure was investigated at pH 3.6, 6.8, and 8.0 by heat-treating aqueous solutions at 100 °C and the powdered material at 180 °C. From integration of high-resolution (1)H NMR spectra, it was possible to follow the relative degradation of each compound, offering advantages over the commonly used ultraviolet/visible (UV/vis) and HPLC approaches. UV/vis spectroscopy and CIE color measurements were used to determine thermally induced color changes, under normal cooking conditions.

  2. Early Identification of Stable Transformation Events by Combined Use of Antibiotic Selection and Vital Detection of Green Fluorescent Protein (GFP) in Carrot (Daucus carota L.) Callus

    Institute of Scientific and Technical Information of China (English)

    Yuan-Yeu Yau; Seth J Davis; Ahmet Ipek; Philipp W Simon

    2008-01-01

    Genetic transformation is a useful technique to complement conventional breeding in crop improvement. Although carrot has been a model organism for in vitro embryogenesis study, genetic transformation of carrot is still lengthy and labor intensive. An efficient transformation and detection system is desirable. Direct infection of Agrobacterium to carrot calli has provided an easy way for carrot genetic transformation. To improve the efficiency of antibiotic selection in this method, we report the combined use of an improved green-fluorescent protein, referred to as smGFP, to establish a versatile selection method for carrot callus transformation system. By combining antibiotic selection with the bright fluorescence observed in the callus tissue, we were able to easily identify stable transformants in early stage of the transformation process. In addition to the GFP expression of the callus cells, the transgenic nature of callus cells was confirmed with Southern and Western analysis. We found we can link the simplicity of carrot-callus-cell transformation, early detection of stable transformants with antibiotic selection, visualization of GFP fluorescence, and molecular analysis (Southern and Western) of callus tissue (non-photosynthetic tissue) to provide a more efficient way in identifying stable transformants at early stage of carrot transformation.

  3. Thermal time model for Egyptian broomrape ‎‎(Phelipanche aegyptiaca parasitism dynamics in carrot ‎‎(Daucus carota L.: Field validation ‎

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    Amnon Cochavi

    2016-12-01

    Full Text Available Carrot, a highly profitable crop in Israel, is severely damaged by Phelipanche aegyptiaca ‎parasitism. Herbicides can effectively control the parasite and prevent damage, but for ‎optimal results, knowledge about the soil-subsurface phenological stage of the parasite is ‎essential. Parasitism dynamics models have been successfully developed for the parasites P. ‎aegyptiaca, Orobanche cumana and O. minor in the summer crops, tomato, sunflower and ‎red clover, respectively. However, these models, which are based on a linear relationship ‎between thermal time and the parasitism dynamics, may not necessarily be directly ‎applicable to the P. aegyptiaca-carrot system. The objective of the current study was to ‎develop a thermal time model to predict the effect of P. aegyptiaca parasitism dynamics on ‎carrot growth. For development and validation of the models, data was collected from a ‎temperature-controlled growth experiment and from 13 plots naturally infested with P. ‎aegyptiaca in commercial carrot fields. Our results revealed that P. aegyptiaca development ‎is related to soil temperature. Moreover, unlike P. aegyptiaca parasitism in sunflower and ‎tomato, which could be predicted both a linear model, P. aegyptiaca parasitism dynamics ‎on carrot roots required a nonlinear model, due to the wider range of growth temperatures of ‎both the carrot and the parasite. Hence, two different nonlinear models were developed for ‎optimizing the prediction of P. aegyptiaca parasitism dynamics. Both models, a beta ‎function model and combined model composed of a beta function and a sigmoid curve, were ‎able to predict first P. aegyptiaca attachment. However, overall P. aegyptiaca dynamics was ‎described more accurately by the combined model (RMSE =14.58 and 10.79, respectively. ‎The results of this study will complement previous studies on P. aegyptiaca management by ‎herbicides to facilitate optimal carrot growth and handling in fields infested with P. ‎aegyptiaca. ‎

  4. Sitios de infección por hongos más frecuentes en la zanahoria (Daucus carota L. y patogenicidad en sus diferentes tejidos.

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    German Rivera

    2016-03-01

    Full Text Available Fungi from carrot roots collected in the field local market were isolated and identified. Sites of natural infection on the root were recorded. Sixteen genera were identified and their pathogenicity tested by  placing them on: not wounded periderm, pericyclic parenchyma, phloem parenchyma and xylem parenchyma. Half of the total fungi was isolated in both field and market samples. The most frequent natural infection sites were the crown, end of the tap root, and lateral roots. In the pathogenicity tests a gradient of resistance was shown varying from a very high level at periderm to a low level at the xylem parenchyma.  Sclerotinia sclerotiorum,  Sclerotium rolfsii, Fusarium tricinctum, F. nivale, F. solani, F. oxysporum, Fusarium sp., Trichoderma sp. y Gliocladium sp., all penetrated directly throught the periderm and also infected the other tissues. Geotrivhum candidum Rhizopus stolonifer . Verticillium sp., Penicillium so., and Candida sp. did no intect the periderm, but were pathogenic  to the pericyclic, phloem, and xylem parenchyma. Phoma sp. and Mucor sp. only infected phloem and xylem parenchyma.

  5. EFEITO DA IRRADIAÇÃO IONIZANTE g NA QUALIDADE PÓS-COLHEITA DE CENOURAS (Daucus carota L. cv. NANTES

    Directory of Open Access Journals (Sweden)

    LIMA Keila S. Cople

    2001-01-01

    Full Text Available O trabalho foi desenvolvido com o objetivo de avaliar o efeito da irradiação gamasobre as características físicas e químicas pós-colheita da cenoura da cultivar Nantes. Segundo a Pesquisa de Orçamento Familiar (POF, 1991 realizada na região Sudeste do Brasil, no grupo de raízes e tubérculos, a cenoura é amplamente consumida. Sabe-se, ainda que, a cenoura representa uma das melhores fontes de carotenóides provitamínicos A (alfa e beta caroteno na dieta. As cenouras foram tratadas com a irradiação ionizante gama, fonte de Césio, nas doses de 0.25, 0.50, 0.75 e 1.0kgy, atendendo a dose máxima permitida pela FDA (1995. Os diferentes tratamentos da cenoura e o grupo-controle foram avaliados através das análises de pH, sólidos solúveis totais (SST, acidez total titulável (ATT, relação SST/ATT, perda de peso, firmeza, cor, carotenóides totais, ácido ascórbico (vitamina C e voláteis. A análise de variância (tratamento estatístico F de Fisher dos resultados obtidos mostrou que não houve diferença significativa ao nível de 5% entre os tratamentos e o grupo controle nas diversas análises realizadas, exceto na diferença total de cor, onde houve uma diminuição da mesma com o aumento da dose de irradiação; na acidez total titulável e na relação SST/ATT devido ao decréscimo dos ácidos orgânicos que geralmente ocorrem após a colheita. O processo de irradiação em baixas doses mostra-se promissor na manutenção da qualidade e apresenta-se como uma medida alternativa na redução de perdas pós-colheita.

  6. Influence of cultivar and harvest year on the volatile profiles of leaves and roots of carrots (Daucus carota spp. sativus Hoffm.).

    Science.gov (United States)

    Ulrich, Detlef; Nothnagel, Thomas; Schulz, Hartwig

    2015-04-08

    The focus of the present work centers on the diversity of volatile patterns of carrots. In total 15 main volatiles were semiquantified in leaves and roots using isolation by headspace solid phase microextraction followed by gas chromatography with FID and MS detection. Significant differences in the main number of compounds were detected between the cultivars as well as the years. Genotype-environment interactions (G × E) are discussed. The most abundant metabolites, β-myrcene (leaves) and terpinolene (roots), differ in the sum of all interactions (cultivar × harvest year) by a factor of 22 and 62, respectively. A statistical test indicates significant metabolic differences between cultivars for nine volatiles in leaves and 10 in roots. In contrast to others the volatiles α-pinene, γ-terpinene, limonene, and myristicine in leaves as well as β-pinene, humulene, and bornyl acetate in roots are relatively stable over years. A correlation analysis shows no strict clustering regarding root color. While the biosynthesis in leaves and roots is independent between these two organs for nine of the 15 volatiles, a significant correlation of the myristicine content between leaves and roots was determined, which suggests the use of this compound as a bitter marker in carrot breeding.

  7. Plant extracts and essential oils on the control of Alternaria alternata , Alternaria dauci and on the germination and emergence of carrot seeds ( Daucus carota L.

    Directory of Open Access Journals (Sweden)

    Cristina Batista de Lima

    2016-05-01

    Full Text Available ABSTRACT: The present study aims to investigate garlic, pepper and coriander plant extract as well as neem and orange peel essential oil effective ness to control Alternaria alternata and Alternaria dauci and their efficiency during carrot seeds germination and emergence. A completely randomized design was used in three different experiments. The first experiment evaluated the effect of plant extracts and essential oils on the incidence of A. alternata and A. dauci . It was done by means of a factorial design applied to five treatments (garlic, pepper, coriander, and neem and orange peel essential oils at three concentrations (10, 20 and 30%.They also evaluated the controls untreated and with fungicide (Thiram.The second experiment evaluated the effect of the treatment at30% concentration on the germination and emergence of seedlings assessed on trays, and in the third experiment, the presence of A. alternata and A. dauci on the pericarp, endosperm and on the embryo. A. alternata showed higher incidence than A. dauci. The garlic extract and the orange essential oil showed the potential to control A. dauci and A. alternata, because their lower concentrations were able to sufficiently reduce the incidence of these fungi and because they do not affect carrot seeds germination and emergence. A. alternata conidia were found on the embryo (8%, pericarp (17% and endosperm (31%.

  8. Effect of cover crops on emergence and growth of carrot (Daucus carota L. in no-plow and traditional tillage

    Directory of Open Access Journals (Sweden)

    Marzena Błażewicz-Woźniak

    2015-03-01

    Full Text Available The aim of the experiment was to determine the influence of cover crop biomass incorporated into the soil at different times and using different treatments on carrot emergence and growth. 7 species of cover crops were included in the study: Secale cereale, Avena sativa, Vicia sativa, Sinapis alba, Phacelia tanacetifolia, Fagopyrum esculentum, and Helianthus annuus.  Number of emerged carrot plants significantly depended on the cover crop used and on the method of pre-winter and spring pre-sowing tillage. Carrot emerged best after a rye or oats cover crop. Regardless of the cover crop species used, the largest number of carrots emerged in cultivation on ridges. In other variants of no-plow tillage, number of seedlings was significantly lower and did not differ from that under traditional plow tillage. The highest leaf rosettes were formed by carrot growing after a rye or oats cover crop. The highest rosettes were produced by carrots in the treatments where tillage was limited to the use of a tillage implement in spring and the lowest ones after pre-winter plowing. The effect of tillage on the emergence and height of carrot leaves largely depended on weather conditions in the successive years of the study. The largest number of leaves was found in carrots grown after a buckwheat cover crop and in cultivation without cover crop, while the smallest one after phacelia and white mustard. Carrots produced the largest number of leaves after a sunflower cover crop and the use of a tillage implement in spring, while the number of leaves was lowest when the mustard biomass was incorporated into the soil in spring. The use of cover crops significantly increased the mass of leaves produced by carrot as compared to the cultivation without cover crop. The largest mass of leaves was produced by carrots grown after the phacelia and mustard cover crops. Conventional plow tillage and pre-winter tillage using a stubble cultivator promoted an increase in the mass of carrot leaves.

  9. Influence of thermal processing on hydrolysis and stability of folate poly-gamma-glutamates in broccoli (Brassica oleracea var. italica), carrot (Daucus carota) and tomato (Lycopersicon esculentum).

    Science.gov (United States)

    Munyaka, Ann Wambui; Verlinde, Philippe; Mukisa, Ivan Muzira; Oey, Indrawati; Van Loey, Ann; Hendrickx, Marc

    2010-04-14

    The folate poly-gamma-glutamate profile, their concentrations, and hydrolysis by endogenous gamma-glutamyl hydrolase (GGH) were evaluated in broccoli, carrot and tomato. Further studies on the effect of time and temperature on folate poly-gamma-glutamate hydrolysis and stability were carried out in broccoli since this vegetable showed the highest long-chain and total folate poly-gamma-glutamate concentration. The evolution of l-ascorbic acid, total phenols and Trolox equivalent antioxidant capacity (TEAC) values was evaluated in parallel. Upon thermal inactivation of GGH prior to crushing, it was observed that broccoli, carrot and tomato contained poly-gamma-glutamates with one to seven glutamate residues but differed in the predominant poly-gamma-glutamates. Crushing of raw broccoli, carrot and tomato resulted in significant poly-gamma-glutamate profile changes in broccoli and carrot (indicating GGH-catalyzed hydrolysis) but not in tomato. In this study, the actual crushing of raw broccoli matrix had a greater effect on folate poly-gamma-glutamate hydrolysis than incubation conditions (0-30 min at 25-55 degrees C). During treatments at 25-140 degrees C, folate retention was higher at 80 and 100 degrees C than at the other temperatures. A similar trend in thermal stability was observed for folates, vitamin C, total phenols and TEAC value, an indication that conditions that result in endogenous antioxidants degradation might also result in folate degradation.

  10. The effect of preliminary processing and different methods of cooking on the iodine content and selected antioxidative properties of carrot (Daucus carota L. biofortified with (potassium iodine

    Directory of Open Access Journals (Sweden)

    Kapusta-Duch Joanna

    2017-06-01

    Full Text Available Carrot is a vegetable that contains many nutrients and has strong antioxidant activity as well as pro-health potential. The level of bioactive compounds is strongly connected with the production chain. The thermal treatment of food products induces several biological, physical and chemical changes. In this study, changes in the levels of iodine, total carotenoids, total polyphenols as well as the antioxidant activity of unpeeled and peeled controls and carrots biofortified with (potassium iodine (KJ during cultivation due to the cooking and steaming process were investigated. The use of thermal processes resulted in a lower concentration of iodine in the roots of the control as well as in carrots biofortified with (potassium iodine. In addition, peeling carrots caused higher losses of this trace element in the control and the biofortified carrots cooked or steamed for various times. In this study, a significant growth of the total carotenoids in peeled carrots biofortified with (potassium iodine and of the total polyphenols in unpeeled carrots biofortified with (potassium iodine under the influence of the cooking and steaming processes was observed compared with raw peeled and unpeeled biofortified carrots, respectively. Antioxidant activity significantly increased in the unpeeled and peeled carrots biofortified with (potassium iodine under all thermal treatments in comparison with the raw unpeeled and peeled biofortified carrots.

  11. Structural and sensory characterization of compounds contributing to the bitter off-taste of carrots (Daucus carota L.) and carrot puree.

    Science.gov (United States)

    Czepa, Andreas; Hofmann, Thomas

    2003-06-18

    Sequential application of solvent extraction, gel permeation chromatography, and HPLC in combination with taste dilution analyses revealed that not a sole compound but a multiplicity of bitter tastants contribute to the bitter off-taste of cold-stored carrots and commercial carrot puree, respectively. Among these bitter compounds, 3-methyl-6-methoxy-8-hydroxy-3,4-dihydroisocoumarin (6-methoxymellein), 5-hydroxy-7-methoxy-2-methylchromone (eugenin), 2,4,5-trimethoxybenzaldehyde (gazarin), (Z)-heptadeca-1,9-diene-4,6-diin-3,8-diol (falcarindiol), (Z)-heptadeca-1,9-diene-4,6-diin-3-ol (falcarinol), and (Z)-3-acetoxy-heptadeca-1,9-diene-4,6-diin-8-ol (falcarindiol 3-acetate) could be identified on the basis of MS as well as 1D- and 2D-NMR experiments. Due to the low concentrations of <0.1 mg/kg and the high taste thresholds found for eugenin and gazarin, these compounds could be unequivocally excluded as important contributors to the bitter taste of carrots. Calculation of bitter activity values as the ratio of their concentration to their bitter detection threshold clearly demonstrated that neither in fresh and stored carrots nor in commercial carrot puree did 6-methoxymellein contribute to the bitter off-taste. In contrast, the concentrations of falcarindiol in stored carrots and, even more pronounced, in carrot puree were found to be 9- and 13-fold above its low bitter detection concentration of 0.04 mmol/kg, thus demonstrating that this acetylenic diol significantly contributes to the bitter taste of the carrot products investigated.

  12. The influence of the fungal pathogen Mycocentrospora acerina on the proteome and polyacetylenes and 6-methoxymellein in organic and conventionally cultivated carrots (Daucus carota) during post harvest storage.

    Science.gov (United States)

    Louarn, Sébastien; Nawrocki, Arkadiusz; Edelenbos, Merete; Jensen, Dan F; Jensen, Ole N; Collinge, David B; Jensen, Birgit

    2012-01-04

    Many carrots are discarded during post harvest cold storage due to development of fungal infections, caused by, e.g., Mycocentrospora acerina (liquorice rot). We compared the susceptibility of carrots grown under conventional and organic agricultural practices. In one year, organically cultivated carrots showed 3× to 7× more symptoms than conventionally cultivated, when studying naturally occurring disease at 4 and 6 months, respectively. On the other hand, we have developed a bioassay for infection studies of M. acerina on carrots and observed that organic roots were more susceptible after one month of storage than conventional ones, but no differences were apparent after four or six months storage. Levels of polyacetylenes (falcarinol, falcarindiol and falcarindiol-3-acetate) did not change, whereas the isocoumarin phytoalexin (6-methoxymellein) accumulated in infected tissue as well as in healthy tissue opposite the infection. The proteomes of carrot and M. acerina were characterized, the intensity of 33 plant protein spots was significantly changed in infected roots including up regulation of defence and stress response proteins but also a decrease of proteins involved in energy metabolism. This combined metabolic and proteomic study indicates that roots respond to fungal infection through altered metabolism: simultaneous induction of 6-methoxymellein and synthesis of defence related proteins.

  13. Characteristics of Red Sweet Potato (Ipomea batatas Analog Rice (SPAR From The addition of Cassava Flour (Manihot utillisima and Carrot (Daucus carota

    Directory of Open Access Journals (Sweden)

    Tuty Anggraini

    2016-10-01

    Full Text Available The objective of this research was to determine the effect of the addition ratio of cassava flour and carrots in making  sweet potato analog rice. This research also used completely randomized design with 5 treatments and 3 replication. The treatment in this study was the addition of cassava flour 90%, 80%, 70%, 60%, 50%, and the carrots 10%, 20%, 30%, 40%, 50% to the entire material. The results showed that the addition of cassava flour and carrots give significantly different results on fat content, antioxidant activity and beta-carotene, no significant difference in moisture content, ash content, protein content, crude fiber content, carbohydrates, total polyphenol. The results of treatment E (50% cassava flour : 50% carrot obtained an average water content of 7.75%, 2.67% ash content, protein content of 2.56%, 0.41% fat, carbohydrate content of 86.59%, crude fibre content 18.74 %, 48.97% antioxidant activity, total polyphenols 0.61%, the determination of the energy value 3.58kcal, beta-carotene 5017.83μg / 100ml.

  14. The Effect of Combination Carrot Juice (Daucus carota L. and Hunkwee Flour in Manufacturing Kefir Ice Cream on Physical and Chemical Quality of Kefir Ice Cream

    Directory of Open Access Journals (Sweden)

    Ilma Mahdiana

    2017-03-01

    Full Text Available The purpose of this research was to determine the best combination of carrot juice (CJ and hunkwee flour (HF on manufacturing of kefir ice cream. The method of this research was experiment with Completely Randomized Design, 4 treatments and 4 replication, the treatments were without carrot juice + HF 5% (P0, CJ 1.5% + HF 3.5% (P1, CJ 3% + HF 2% (P2, CJ 4.5% + HF 0.5% (P3, the presentage based on Ice Cream Mix (ICM. The variables measured were antioxidant activity, viscosity, total solid and organoleptic (textur, taste and aroma. The data was analized by using Analysis Of Variance (ANOVA continued by Honestly Significance Difference (HSD test. The result of this research showed that the combination of carrot juice and hunkwee flour gave highly significant difference effect (P0.05 on aroma. Conclusion: the combination of carrot juice 1.5% + hunkwee flour 3.5% (P1 in kefir ice cream gave the best result.

  15. Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers

    Science.gov (United States)

    Carrot is one of the most economically important vegetables worldwide, however, genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to investigate genetic diversity and to devel...

  16. The effect of commercial enzyme preparation-assisted maceration on the yield, quality, and bioactivity of essential oil from waste carrot seeds (Daucus carota L.

    Directory of Open Access Journals (Sweden)

    Śmigielski, K. B.

    2014-12-01

    Full Text Available Eight enzyme preparations were screened with a view to maximizing the yield of carrot seed essential oil. Three of the eight enzyme preparations investigated, lipase from Mucor circinelloides, XPect® pectinase, and Esperase® protease, significantly influenced the amount of essential oil obtained, with Esperase® being the most effective. The Taguchi method was applied to optimize the processing conditions for the Esperase® protease. Under the optimum conditions, the essential oil yield increased by approximately 48%. The main constituent compounds in the oil are: carotol (OeA: 40.80%–OeB: 46.17%, daucol (OeA: 7.35%–OeB: 6.22%, sabinene (OeA: 5.12%–OeB: 6.13%, alpha-pinene (OeA: 4.24%–OeB: 5.11% and geranyl acetate (OeA: 4.50%–OeB: 3.68%. As compared to the control sample, the essential oil obtained from enzyme-pretreated carrot seeds has the same biological activity against Bacillus subtilis and Candida sp., lower activity against Staphylococcus aureus, Escherichia coli, and Pseudomonas aeruginosa, and higher activity against Aspergillus niger and Penicillium expansum.Ocho preparados enzimáticos fueron seleccionados con el fin de maximizar el rendimiento de aceites esenciales de semillas de zanahoria. Tres de los ocho preparados de las enzimas investigadas, lipasa de Mucor circinelloides, Xpect® pectinasa y Esperase® proteasa, influyeron de manera significativa sobre la cantidad de aceite esencial obtenido, siendo Esperase® el más eficaz. El método de Taguchi se aplicó para optimizar las condiciones del procesamiento para esta última. Bajo las condiciones óptimas, el rendimiento de los aceite esenciales aumentó aproximadamente un 48%. Los principales compuestos constituyentes del aceite son: carotol (OEA: 40.80%–OeB: 46,17%, ducol (OEA: 7,35%–OeB: 6,22%, sabineno (OEA: 5,12%–OeB: 6,13%, alfa-pineno (OEA: 4,24%– OeB: 5,11% y acetato de geranilo (OEA: 4,50%–OeB: 3,68%. En comparación con la muestra control, el aceite esencial obtenido a partir de las semillas de zanahoria mediante enzima-pretratada tiene la misma actividad biológica frente a Bacillus subtilis y Candida sp., menor actividad frente a Staphylococcus aureus, Escherichia coli, y Pseudomonas aeruginosa, y una mayor actividad contra Aspergillus niger y Penicillium expansum.

  17. Radiation processing to ensure safety of minimally processed carrot (Daucus carota) and cucumber (Cucumis sativus): optimization of dose for the elimination of Salmonella Typhimurium and Listeria monocytogenes.

    Science.gov (United States)

    Dhokane, V S; Hajare, S; Shashidhar, R; Sharma, A; Bandekar, J R

    2006-02-01

    Minimally processed vegetables are in demand, because they offer convenience to consumers. However, these products are often unsafe because of possible contamination with pathogens, such as Salmonella, Escherichia coli O157:H7, and Shigella species. Therefore, this study was carried out to optimize the radiation dose necessary to ensure the safety of precut carrot and cucumber. Decimal reduction doses (D-values) of Salmonella Typhimurium MTCC 98 were ca. 0.164 kGy in carrot samples and 0.178 kGy in cucumber samples. D-values of Listeria monocytogenes were determined to be 0.312 and 0.345 kGy in carrot and cucumber samples, respectively. Studies of inoculated, packaged, minimally processed carrot and cucumber samples showed that treatment with a 1-kGy dose of gamma radiation eliminated up to 4 log CFU/g of Salmonella Typhimurium and 3 log CFU/g of L. monocytogenes. However, treatment with a 2-kGy dose was necessary to eliminate these pathogens by 5 log CFU/g. Storage studies showed that both Salmonella Typhimurium and L. monocytogenes were able to grow at 10 degrees C in inoculated control samples. Neither of these pathogens could be recovered from radiation-processed samples after storage for up to 8 days.

  18. Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry

    Science.gov (United States)

    The genus Daucus (Apiaceae) comprises species from around the world, covering a wide climatic range, and showing great morphological plasticity. Both cultivated and wild forms are described within the genus. The aim of the present study was to estimate the genome size variability in the collection o...

  19. Evaluation of total carotenoids, alpha- and beta-carotene in carrots (Daucus carota L. during home processing Avaliação de carotenóides totais, alfa e beta-caroteno em cenoura (Daucus carota L. durante processamento a nível doméstico

    Directory of Open Access Journals (Sweden)

    Helena Maria PINHEIRO-SANT’ANA

    1998-04-01

    Full Text Available This study aims to analyze the influence of dehydration and different preparation methods during home processing related toalpha-carotene, beta-carotene and total carotenoids stability in carrots. Vitamin A values were evaluated after different treatments. Thus, carrots were submitted to steam cooking, water cooking with and without pressure, moist/dry cooking and conventional dehydration. Determination of alpha- and beta-carotenes was made by High-Performance Liquid Chromatography (HPLC (conditions were developed by us using spectrophotometric detection visible-UV at 470 nm; a RP-18 column and methanol: acetonitrile: ethyl acetate (80: 10: 10 as mobile phase. Total carotenoids quantification was made by 449 nm spectrophotometer. The retention of the analyzed carotenoids ranged from 60.13 to 85.64%. Water cooking without pressure promoted higher retention levels of alpha- and beta-carotene and vitamin A values, while water cooking with pressure promoted higher retention levels of total carotenoids. Dehydration promoted the highest carotenoid losses. The results showed that, among the routinely utilized methods under domestic condition, cooking without pressure, if performed under controlled time and temperature, is the best method as it reduces losses in the amount of alpha- and beta-carotene, the main carotenoids present in the carrots. Despite the significant carotenoid losses, carrots prepared through domestic methods, remain a rich source of provitamin A.O presente estudo teve como objetivo analisar a influência da desidratação e de diferentes métodos de preparo a nível doméstico sobre a estabilidade de alfa-caroteno, beta-caroteno e carotenóides totais em cenouras. Os valores de vitamina A foram avaliados após os diferentes tratamentos. Para tanto, amostras de cenoura foram submetidas à cocção a vapor, cocção em água com e sem pressão, cocção úmida/seca e à desidratação convencional. Para a determinação de alfa e beta-caroteno utilizou-se Cromatografia Líquida de Alta Eficiência (CLAE. As condições utilizadas (desenvolvidas por nós constaram de dectecção espectrofotométrica UV-visível a 470 nm; coluna RP-18 e metanol: acetonitrila: acetato de etila (80: 10: 10 como fase móvel. Os carotenóides totais foram quantificados por espectrofotometria a 449 nm. A retenção dos carotenóides analisados após os tratamentos variou de 60,13 a 85,64%. A cocção em água sem pressão permitiu os maiores níveis de retenção de alfa- e beta-caroteno e também dos valores de vitamina A. Os carotenóides totais foram melhor preservados quando a cocção em água com pressão foi utilizada. O processo de desidratação provocou as maiores perdas nos três tipos de carotenóides analisados. Os resultados mostraram que, entre os métodos rotineiramente utilizados a nível doméstico, a cocção em água sem pressão, se realizada em condições controladas de tempo e tempertura, é o melhor método para reduzir perdas no conteúdo de alfa- e beta-caroteno, principais carotenóides provitamínicos A da cenoura. Apesar das perdas significativas de carotenóides, cenouras preparadas a nível doméstico permanecem como uma rica fonte de provitamina A.

  20. COMPORTAMENTO DA “TROPICAL” – NOVA VARIEDADE DE CENOURA (Daucus carota L. – NO FINAL DA ESTAÇÃO CHUVOSA EM GOIÂNIA “TROPICAL” - A NEW CARROT (Daucus carota L. VARIETY UNDER FINAL RAINY SEASON CONDITIONS IN GOIÂNIA

    Directory of Open Access Journals (Sweden)

    José Carlos Martins

    2007-09-01

    Full Text Available

    “Tropical”, nova variedade da cenoura, do tipo anual, foi comparada com as variedades bienais “Nantes” e “Kuroda”, em plantio no final da estação chuvosa, em Goiânia. A partir de três semanas depois da semeadura 50, para controlar o ataque de Alternaria dauci (Kühn Groves & Skolko, agente causal da “queima das folhas”. "Nantes" foi a variedade mais vitimada por essa doença, não chegando a produzir raízes comerciáveis. As plantas de "Kuroda” mostraram-se pouco susceptíveis à queima das folhas, mas suas raízes apresentaram um formato acentuadamente cônico. “Tropical” mostrou-se quase tão resistente à queima quanto a “Kuroda”, mas superou esta significantemente em rendimento de raízes comerciáveis, com predominância do formato cilíndrico. Em todas as parcelas de “Tropical” ocorreram uma até seis plantas pendoadas.

    “Tropical”, a new annual variety of carrot was compared with the biennial varieties “Nantes” and “Kuroda”, in a field trial, during the end of the rainy season, in Goiânia, state of Goiás, Brazil. After three weeks of the seeding, the plants were sprayed with Difolatan 50, at ten days intervals to control the attack of Alternaria dauci (Kühn Groves & Skolko. ";Tropical” was significantly the best in yielding marketable roots of cilindrical shape, which is preferred to the conical one of “Kuroda” by the Brazilian consumer. No marketable yield was obtained from “Nantes” because of its high susceptibility to Alternaria blight. “Tropical” showed to be almost as resistant as “Kuroda” to this disease. There were some bolting plants in all plots of the new variety.

  1. Biological activities and volatile constituents of Daucus muricatus L. from Algeria

    OpenAIRE

    Bendiabdellah Amel; El Amine Dib Mohammed; Djabou Nassim; Allali Hocine; Tabti Boufeldja; Muselli Alain; Costa Jean

    2012-01-01

    Abstract Background In order to find new bioactive natural products, the antimicrobial and antioxidant activities of essential oil components extracted from the separated organs of the Algerian medicinal and aromatic plant Daucus muricatus L. were studied. Results The chemical composition of essential oils obtained by hydrodistillation (HD) was investigated using Gas Chromatography–Retention Indices (GC-RI) and GC–Mass Spectrometry (GC-MS). Two types of essential oils were produced by D. muri...

  2. Antibacterial Activity of Daucus crinitus Essential Oils along the Vegetative Life of the Plant

    OpenAIRE

    Bendiabdellah, Amel; DIB, Mohammed El Amine; Meliani, Nawel; Muselli, Alain; Nassim, Djabou; Tabti, Boufeldja; Costa, Jean

    2013-01-01

    The essential oils from the aerial parts of Daucus crinitus Desf. were analyzed at three developmental stages (early vegetative, early flowering, and full flowering). Oil yield was found to vary depending on the stage of development, and the highest content of oil (0.15% w/w) was obtained at full flowering. The chemical composition of essential oils studied by GC and GC-MS showed a total of 71 compounds: 27 aliphatic compounds, 18 sesquiterpene hydrocarbons, 9 hydrocarbons monoterpene, 5 oxyg...

  3. Preliminary phytochemical screening and antioxidant activities of solvent extracts from Daucus crinitus Desf., from Algeria

    OpenAIRE

    Bendiabdellah, Amel; DIB, Mohammed El Amine; Meliani, Nawel; Djabou, Nassim; Allali, Hocine; Tabti, Boufeldja

    2012-01-01

    The presence of natural antioxidant in plants is well known. Plant phenolics constitute one of the major groups of components that act as primary antioxidant free radical terminators. This paper reports the antioxidative activity of methanolic and water extract of Daucus crinitus Desf. Phytochemical screening of the crude extracts of stems/leaves revealed the presence of different kind of chemical groups such as tannin, flavonoids, phenolic acids and coumarins. The amounts of tota...

  4. Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae):Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid

    Science.gov (United States)

    We explored the phylogenetic utility of entire plastid DNA sequences in Daucus and compared the results to prior phylogenetic results using plastid, nuclear, and mitochondrial DNA sequences. We obtained, using Illumina sequencing, full plastid sequences of 37 accessions of 20 Daucus taxa and outgrou...

  5. Risk analysis of Safety Service Patrol (SSP) systems in Virginia.

    Science.gov (United States)

    Dickey, Brett D; Santos, Joost R

    2011-12-01

    The transportation infrastructure is a vital backbone of any regional economy as it supports workforce mobility, tourism, and a host of socioeconomic activities. In this article, we specifically examine the incident management function of the transportation infrastructure. In many metropolitan regions, incident management is handled primarily by safety service patrols (SSPs), which monitor and resolve roadway incidents. In Virginia, SSP allocation across highway networks is based typically on average vehicle speeds and incident volumes. This article implements a probabilistic network model that partitions "business as usual" traffic flow with extreme-event scenarios. Results of simulated network scenarios reveal that flexible SSP configurations can improve incident resolution times relative to predetermined SSP assignments.

  6. School Teams up for SSP Functional Models

    Science.gov (United States)

    Pignolet, G.; Lallemand, R.; Celeste, A.; von Muldau, H.

    2002-01-01

    Space Solar Power systems appear increasingly as one of the major solutions to the upcoming global energy crisis, by collecting solar energy in space where this is most easy, and sending it by microwave beam to the surface of the planet, where the need for controlled energy is located. While fully operational systems are still decades away, the need for major development efforts is with us now. Yet, for many decision-makers and for most of the public, SSP often still sounds like science fiction. Six functional demonstration systems, based on the Japanese SPS-2000 concept, have been built as a result of a cooperation between France and Japan, and they are currently used extensively, in Japan, in Europe and in North America, for executive presentations as well as for public exhibitions. There is demand for more models, both for science museums and for use by energy dedicated groups, and a senior high school in La Reunion, France, has picked up the challenge to make the production of such models an integrated practical school project for pre-college students. In December 2001, the administration and the teachers of the school have evaluated the feasibility of the project and eventually taken the go decision for the school year 2002- 2003, when for education purposes a temporary "school business company" will be incorporated with the goal to study and manufacture a limited series of professional quality SSP demonstration models, and to sell them world- wide to institutions and advocacy groups concerned with energy problems and with the environment. The different sections of the school will act as the different services of an integrated business : based on the current existing models, the electronic section will redesign the energy management system and the microwave projector module, while the mechanical section of the school will adapt and re-conceive the whole packaging of the demonstrator. The French and foreign language sections will write up a technical manual for

  7. Etude chimique et biologique des huiles essentielles de Juniperus phoenicea ssp. lycia et Juniperus phoenicea ssp. turbinata du Maroc

    Directory of Open Access Journals (Sweden)

    Mansouri, N.

    2011-01-01

    Full Text Available Chemical and biological study of essential oils of Moroccan Juniperus phoenicea ssp. lycia and Juniperus phoenicea ssp. turbinata. The composition of the essential oils of the branches and berries of Juniperus phoenicea (Cupressaceae, J. phoenicea ssp. lycia (plain and J. phoenicea ssp. turbinata (mountain, obtained by hydrodistillation, collected from Morocco, was analyzed by GC and GC/MS. The yields of essential oils were varying in function of the subspecies and of the part of the plant studied. The essential oils of these tree species are largely dominated by α-pinene and may be an important source of this component of a great interest on the international market. The effectiveness of essential oils from branches of the subspecies lycia against fungi decay wood has also been emphasized.

  8. Biological activities and volatile constituents of Daucus muricatus L. from Algeria

    Science.gov (United States)

    2012-01-01

    Background In order to find new bioactive natural products, the antimicrobial and antioxidant activities of essential oil components extracted from the separated organs of the Algerian medicinal and aromatic plant Daucus muricatus L. were studied. Results The chemical composition of essential oils obtained by hydrodistillation (HD) was investigated using Gas Chromatography–Retention Indices (GC-RI) and GC–Mass Spectrometry (GC-MS). Two types of essential oils were produced by D. muricatus: (i) The oil from roots is mainly composed by nonterpenic oxygenated compounds (59.8 g/100 g), and (ii) the aerial part oils (i.e., the leaves, stems, flowers, and umbels) was mainly composed by terpenic hydrocarbon compounds (62.3–72.2 g/100 g). The chemical composition of the volatile fraction isolated from different organs of Daucus muricatus were studied by HS–SPME/GC–RI and GC–MS after optimization of Solid Phase MicroExtraction parameters. For all organs studied, the main volatiles emitted by the plant were hydrocarbon compounds (60.7–82.2 g/100 g). Only quantitative differences between the volatiles of the separated organs studied were observed. In addition, the activity of the oil of D. muricatus against eight bacterial strains and one yeast was investigated. The oil from roots revealed active against S. aureus, while the essential oil obtained from the aerial parts was active against the yeast C. albicans. Conclusions Daucus muricatus essential oil seems be a promising source of natural products with potential antimicrobial activity. PMID:22647252

  9. Biological activities and volatile constituents of Daucus muricatus L. from Algeria

    Directory of Open Access Journals (Sweden)

    Bendiabdellah Amel

    2012-05-01

    Full Text Available Abstract Background In order to find new bioactive natural products, the antimicrobial and antioxidant activities of essential oil components extracted from the separated organs of the Algerian medicinal and aromatic plant Daucus muricatus L. were studied. Results The chemical composition of essential oils obtained by hydrodistillation (HD was investigated using Gas Chromatography–Retention Indices (GC-RI and GC–Mass Spectrometry (GC-MS. Two types of essential oils were produced by D. muricatus: (i The oil from roots is mainly composed by nonterpenic oxygenated compounds (59.8 g/100 g, and (ii the aerial part oils (i.e., the leaves, stems, flowers, and umbels was mainly composed by terpenic hydrocarbon compounds (62.3–72.2 g/100 g. The chemical composition of the volatile fraction isolated from different organs of Daucus muricatus were studied by HS–SPME/GC–RI and GC–MS after optimization of Solid Phase MicroExtraction parameters. For all organs studied, the main volatiles emitted by the plant were hydrocarbon compounds (60.7–82.2 g/100 g. Only quantitative differences between the volatiles of the separated organs studied were observed. In addition, the activity of the oil of D. muricatus against eight bacterial strains and one yeast was investigated. The oil from roots revealed active against S. aureus, while the essential oil obtained from the aerial parts was active against the yeast C. albicans. Conclusions Daucus muricatus essential oil seems be a promising source of natural products with potential antimicrobial activity.

  10. Antibacterial Activity of Daucus crinitus Essential Oils along the Vegetative Life of the Plant

    OpenAIRE

    Bendiabdellah, Amel; DIB, Mohammed El Amine; Meliani, Nawel; Muselli, Alain; Nassim, Djabou; Tabti, Boufeldja; Costa, Jean

    2013-01-01

    The essential oils from the aerial parts of Daucus crinitus Desf. were analyzed at three developmental stages (early vegetative, early flowering, and full flowering). Oil yield was found to vary depending on the stage of development, and the highest content of oil (0.15% w/w) was obtained at full flowering. The chemical composition of essential oils studied by GC and GC-MS showed a total of 71 compounds: 27 aliphatic compounds, 18 sesquiterpene hydrocarbons, 9 hydrocarbons monoterpene, 5 oxyg...

  11. The SSP4: A world of deepening inequality

    Energy Technology Data Exchange (ETDEWEB)

    Calvin, Katherine; Bond-Lamberty, Ben; Clarke, Leon; Edmonds, James; Eom, Jiyong; Hartin, Corinne; Kim, Sonny; Kyle, Page; Link, Robert; Moss, Richard; McJeon, Haewon; Patel, Pralit; Smith, Steve; Waldhoff, Stephanie; Wise, Marshall

    2017-01-01

    The Shared Socioeconomic Pathway 4 (SSP4), “Inequality” or “A Road Divided,” is one of the five SSPs developed to guide the creation of new scenarios for the “Parallel Process”. We describe, in quantitative terms, the SSP4 as implemented by the Global Change Assessment Model (GCAM), the marker model for this scenario. We use demographic and economic assumptions, in combination with technology and non-climate policy assumptions to develop a quantitative representation of energy, land-use and land-cover that are consistent with the SSP4 storyline. The resulting scenario is one with stark differences across regions. High-income regions prosper, continuing to increase their demand for energy and food. Electrification increases in these regions, with the increased generation being met by nuclear and renewables. Low-income regions, however, stagnate due to limited growth in income. These regions continue to depend on traditional biofuels, leading to high pollutant emissions. Due to a declining dependence on fossil fuels in all regions, total radiative forcing only reaches 6.4 Wm-2 in 2100, making this a world with relatively low challenges to mitigation. We explore the effects of mitigation effort on the SSP4 world, finding that the imposition of a carbon price has a varied effect across regions. In particular, the SSP4 mitigation scenarios are characterized by afforestation in the high-income regions and deforestation in the low-income regions. Finally, we compare the GCAM SSP4 results to other integrated assessment model (IAM) quantifications of the SSP4 and to other SSPs, both those generated by GCAM and those of the other IAMs.

  12. [Flavonoids of Artemisia campestris, ssp. glutinosa].

    Science.gov (United States)

    Hurabielle, M; Eberle, J; Paris, M

    1982-10-01

    Four flavanones (pinostrobin, pinocembrin, sakuranetin and naringenin), one dihydroflavonol (7-methyl aromadendrin) and one flavone (hispidulin) have been isolated from Artemisia campestris L. ssp. glutinosa Gay and identified by spectroscopic methods. Artemisia campestris L. sous-espèce glutinosa Gay est une Composée Anthémidée largement répandue sur les sables du littoral méditerranéean et abondante dans certaines régions d'Espagne et d'Italie. Dans le cadre d'une étude chimiotaxonomique du genre Artemisia Tourn., nous nous sommes intéressés à l'analyse des flavonoïdes, composés jamais décrits, à notre connaissance, dans cette espèce d' Artemisia. Les sommités fleuries d' Artemisia campestris sous-espèce glutinosa, séchées et pulvérisées, sont dégraissées à l'ether de pétrole et épuisées par le chloroforme. Le fractionnement de l'extrait chloroformique, par chromatographie sur colonne de silice, et la purification de certaines fractions conduisent à l'isolement de six génines flavoniques, à l'etat pur. L' étude des spectres UV, des spectres de masse et des spectres de RMN [1,2] et la comparaison avec des échantillons authentiques permettent de proposer, pour ces flavonoïdes, les structures de la pinostrobine [3], de la pinocembrine [4], de la sakuranétine, de la naringénine [5] (flavanones), de la méthyl-7-aromadendrine, [6, 7] (dihydroflavonol) et de l'hispiduline [8, 9] (flavone); quatre de ces génines sont méthylées. Parmi ces flavonoïdes, la pinostrobine n'a jamais été décrite, à notre connaissance, dans la famille des Composées; la pinocembrine, la sakuranétine et la naringénine ont déjà été signalées chez quelques Astéracées et Eupatoriées [10], et l'hispiduline dans la tribu des Anthémidées ( Santolina chamaecyparissus L.) [8]. Seule, la méthyl-7-aromadendrine semble décrite, à ce jour, dans le genre Artemisia Tourn. [7].

  13. Estudio etnobotánico, arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana y A. mexicana ssp. xolocotziana Etnobotany, leaf architecture, and vegetative anatomy of Agastache mexicana ssp. mexicana and A. mexicana ssp. xolocotziana

    OpenAIRE

    Magali A. Santillán-Ramírez; Ma. Edith López-Villafranco; Silvia Aguilar-Rodríguez; Abigail Aguilar-Contreras

    2008-01-01

    El presente trabajo incluye información etnobotánica, así como la arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana (toronjil morado) y A. mexicana ssp. xolocotziana (toronjil blanco), con la finalidad de que sean incluidas en la Farmacopea Herbolaria de los Estados Unidos Mexicanos (FHEUM) y que sus caracteres anatómicos se utilicen para validar la identidad del material vegetal en el control de calidad. El registro de la información etnobotánica se efectuó por me...

  14. Estudio etnobotánico, arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana y A. mexicana ssp. xolocotziana Etnobotany, leaf architecture, and vegetative anatomy of Agastache mexicana ssp. mexicana and A. mexicana ssp. xolocotziana

    OpenAIRE

    Magali A. Santillán-Ramírez; Ma. Edith López-Villafranco; Silvia Aguilar-Rodríguez; Abigail Aguilar-Contreras

    2008-01-01

    El presente trabajo incluye información etnobotánica, así como la arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana (toronjil morado) y A. mexicana ssp. xolocotziana (toronjil blanco), con la finalidad de que sean incluidas en la Farmacopea Herbolaria de los Estados Unidos Mexicanos (FHEUM) y que sus caracteres anatómicos se utilicen para validar la identidad del material vegetal en el control de calidad. El registro de la información etnobotánica se efectuó por me...

  15. Main: L1DCPAL1 [PLACE

    Lifescience Database Archive (English)

    Full Text Available L1DCPAL1 S000504 15-September-2006 (last modified) kehi L1 element, found in PAL1 p...romoter in carrot (Daucus carota), is a protoplastization (dilution) responsive element; L1 contains Box L-l...ike sequence (ACCTACCC); see also S000492 (BOXL CORE of DC PAL1); L1 Daucus carota (carrot) ATTCACCTACCC ...

  16. Galanthindole: a new indole alkaloid from Galanthus plicatus ssp. byzantinus.

    Science.gov (United States)

    Unver, Nehir; Kaya, G Irem; Werner, Christa; Verpoorte, Robert; Gözler, Belkis

    2003-09-01

    A new indole alkaloid, galanthindole, was isolated from Galanthus plicatus ssp. byzantinus (Amaryllidaceae), a plant native to northwestern Turkey. Incorporating a non-fused indole ring, galanthindole may represent the prototype of a new subgroup of the Amaryllidaceae alkaloids. Two other bases, (+)-11-hydroxyvittatine and hordenine, are also reported from the same plant.

  17. Campylobacter fetus ssp jejuni en patología humana

    Directory of Open Access Journals (Sweden)

    Luz Echeverri

    1982-06-01

    Full Text Available Algunos microorganismos, como los Rotovirus y el Compylobocter fetus ssp jejuni reconocidos y estudiados recientemente, han llegado a ocupar un lugar preponderante en el grupo de enteropatógenos considerados como problema en salud pública.

  18. Molecular typing for the MHC with PCR-SSP.

    Science.gov (United States)

    Welsh, K; Bunce, M

    1999-01-01

    Sequence-specific amplification (SSP) is simply a form of polymerase chain reaction (PCR) which involves designing one or both primers so that they will or will not allow amplification (the 3'-mismatch principle). Its origins are probably legion, i.e. many people probably thought of it at the same time. For example, in 1988 a group from Guy's Hospital, London, described a form of SSP for HLA-DR4 detection and in the same year a group from Upjohn described its use at the American Society of Histocompatibility and Immunogenetics (ASHI). Both are published in abstract form (British Society of Rheumatology and ASHI). The 3'-mismatch principle can be used to identify virtually any single nucleotide point mutation (SNP) within one or two PCR-SSP reactions and the first peer-reviewed statements of this came in 1989 (1, 2). Thus, although the use of SSP probably began around 1990, it was 5 years before its popularity erupted, mainly due to the work of Olerup & Zetterquist (3, 4), who defined its potential for solid organ transplantation. It is now the method of choice for high resolution HLA typing in many laboratories. In addition, over a thousand applications for genes outside the MHC are in the literature.

  19. Partial chemical composition and antimicrobial activity of Daucus crinitus Desf. extracts

    Energy Technology Data Exchange (ETDEWEB)

    Dib, M. A.; Bendahou, M.; Bendiabdellah, A.; Djabou, N.; Allali, H.; Tabti, B.; Paolini, J.; Costa, J.

    2010-07-01

    The chemical composition of fatty acids and the unsaponifiable fraction of the roots, leaves and stems from Daucus crinitus Desf. were, determined using gas chromatography (GC) and gas chromatography-Mass Spectrometry (GC-MS). The fatty acid fractions of different organs (leaves, stems and roots) were characterized by lauric acid (17.9, 17.5 and 18.1 % respectively) and other long chain fatty acids (until C22). Qualitative and quantitative differences were reported between the unsaponifiable fractions of different organs from D. crinitus. The unsaponifiable fractions of the leaves, roots and stem showed high amounts of aliphatic components (83.4%, 87.2% and 91.4%, respectively). The monoterpen, diterpen and sesquiterpen components were only present in small percentages. The antimicrobial properties of the D. critinus extracts were tested on four different microorganisms. These extracts were found to be active against Bacillus cereus, Staphylococcus aureus, Escherichia coli and Candida albicans. (Author) 35 refs.

  20. Evaluación del potencial de promoción del crecimiento vegetal de microorganismos aislados a partir de residuos de higerilla (Recinus communis) en zanahoria (daucus carota)

    OpenAIRE

    Villota, Claudia Patricia

    2013-01-01

    Tesis (Especialista en Microbiología Industrial). Universidad Católica de Manizales, 2013 Las hortalizas representan el 85% del área sembrada en Colombia, entre ellas están la arveja, tomate, cebolla de bulbo, cebolla junca, arracacha, zanahoria, cilantro, habichuela, zapallo y repollo . Al ser atacadas por plagas y enfermedades, el agricultor realiza control químico alterando de esta manera la economía, la salud y el medio ambiente. El indiscriminado uso de fertilizantes y agroquímicos en...

  1. Effect of intercropping carrot (Daucus carota L. with french marigold (Tagetes patula nana L. and pot marigold (Calendula officinalis L. on the occurrence of some pests and quality of carrot yield

    Directory of Open Access Journals (Sweden)

    Beata Jankowska

    2012-12-01

    Full Text Available Intercropping combines different aspects of the interaction between organisms in ecosystems and may be classified as a pro-ecological method of plant cultivation limiting the harmful human interference in the environment, especially the use of chemicals. It also allows high yield, good quality, and economic productivity to be achieved. The aim of the present study, conducted in the years 2003–2004 in Mydlniki near Kraków, was to determine the effect of intercropping carrot Nardin F1 with French marigold (Tagetes patula nana L. 'Kolombina' and pot marigold (Calendula officinalis L. 'Promyk' on carrot yield, its quality, and the occurrence of pests. On average in both years of the study, intercropping did not reduce total or marketable carrot yield. In 2003 intercropping contributed to a significant increase in marketable yield compared with yield from sole cropping. In 2004 the dry matter content was higher in the roots of carrots grown with pot marigold. The treatments intercropped with both French and pot marigold were characterized by an increased content of sugars in carrot roots and in 2004 year – of carotenoids. Intercropping had a significant effect on the number of roots damaged by the carrot rust fly, Psila rosae, (the best in this respect was the combination with Tagetes and by nematodes (the best in this respect was the combination with Calendula. The number of larvae of carrot psyllid, Trioza viridula, was significantly lower in the plots where carrot was intercropped. The study did not find intercropping to have a positive effect on reducing the occurrence of the root aphid.

  2. Influence of field attack by carrot psyllid (Trioza apicalis Förster) on sensory quality, antioxidant capacity and content of terpenes, falcarindiol and 6-methoxymellein of carrots (Daucus carota L.).

    Science.gov (United States)

    Seljåsen, Randi; Vogt, Gjermund; Olsen, Elisabeth; Lea, Per; Høgetveit, Lars Arne; Tajet, Torgeir; Meadow, Richard; Bengtsson, Gunnar B

    2013-03-20

    The effect of different degrees of attack by carrot psyllid (Trioza apicalis) on quality parameters of carrots was studied in field experiments for two years. Treatments were different degrees of physical insect protection by floating row cover. An increasing attack level of psyllids showed an enhancement effect on the antioxidant capacity (ORAC), content of falcarindiol, 6-methoxymellein, and terpenes, and scores for bitter taste, chemical flavor, terpene flavor, and toughness. Carrot psyllid attack decreased the yield, total sugar, fructose, glucose, and sensory attributes sweet taste, color hue, color strength, crispiness, and juiciness. Carrot plants at 8-10 weeks of age tolerated attack by psyllids at low levels (2% leaves with curling or discoloration).

  3. Effect of intercropping carrot (Daucus carota L.) with two aromatic plants, coriander (Coriandrum sativum L.) and summer savory (Satureja hortensis L.), on the population density of select carrot pests

    OpenAIRE

    Jankowska Beata; Wojciechowicz-Żytko Elżbieta

    2016-01-01

    Intercropping, or the use of different aspects of the interaction between organisms in ecosystems, can be classified as an ecological method that limits harmful human interference in the environment, especially the consumption of chemicals. The impact of intercropping carrot with coriander Coriandrum sativum L. and summer savory Satureja hortensis L. on the occurrence of select carrot pests was estimated in the years 2010-2011. Intercropping had a significant effect on the decrease of the num...

  4. Effect of intercropping carrot (Daucus carota L.) with french marigold (Tagetes patula nana L.) and pot marigold (Calendula officinalis L.) on the occurrence of some pests and quality of carrot yield

    OpenAIRE

    Beata Jankowska; Elżbieta Jędrszczyk; Małgorzata Poniedziałek

    2012-01-01

    Intercropping combines different aspects of the interaction between organisms in ecosystems and may be classified as a pro-ecological method of plant cultivation limiting the harmful human interference in the environment, especially the use of chemicals. It also allows high yield, good quality, and economic productivity to be achieved. The aim of the present study, conducted in the years 2003–2004 in Mydlniki near Kraków, was to determine the effect of intercropping carrot Nardin F1 with Fren...

  5. Effect of intercropping carrot (Daucus carota L. with two aromatic plants, coriander (Coriandrum sativum L. and summer savory (Satureja hortensis L., on the population density of select carrot pests

    Directory of Open Access Journals (Sweden)

    Jankowska Beata

    2016-06-01

    Full Text Available Intercropping, or the use of different aspects of the interaction between organisms in ecosystems, can be classified as an ecological method that limits harmful human interference in the environment, especially the consumption of chemicals. The impact of intercropping carrot with coriander Coriandrum sativum L. and summer savory Satureja hortensis L. on the occurrence of select carrot pests was estimated in the years 2010-2011. Intercropping had a significant effect on the decrease of the number of roots damaged by carrot rust fly Psila rosae. During harvest, the least number of damaged roots was observed in combination with summer savory S. hortensis L. The number of carrot psyllid Trioza viridula Zett. and aphids on carrot leaves and roots damaged by nematodes was significantly lower on plots where carrot was intercropped. Intercropping both herbs had a positive influence on the number of beneficial insects. In all of the years of the study, the highest number of Coccinellidae and Syrphidae were observed on plots where carrot was intercropped with coriander.

  6. The influence of the fungal pathogen Mycocentrospora acerina on the proteome and polyacetylenes and 6-methoxymellein in organic and conventionally cultivated carrots (Daucus carota) during post harvest storage

    DEFF Research Database (Denmark)

    Louarn, Sébastien; Nawrocki, Arkadiusz; Edelenbos, Merete

    2012-01-01

    month of storage than conventional ones, but no differences were apparent after four or six months storage. Levels of polyacetylenes (falcarinol, falcarindiol and falcarindiol-3-acetate) did not change, whereas the isocoumarin phytoalexin (6-methoxymellein) accumulated in infected tissue as well...

  7. Genetic diversity, structure and differentiation within and between cultivated (Vitis vinifera L. ssp. sativa) and wild (Vitis vinifera L. ssp. sylvestris) grapes

    Science.gov (United States)

    Genetic characterization of 502 diverse grape accessions including 342 cultivated (V. vinifera ssp. sativa) and 160 wild (V. vinifera ssp. sylvestris) grapes showed considerable genetic diversity among accessions. A total of 117 alleles were detected with the average of 14 alleles per locus. The tot...

  8. Estudio etnobotánico, arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana y A. mexicana ssp. xolocotziana Etnobotany, leaf architecture, and vegetative anatomy of Agastache mexicana ssp. mexicana and A. mexicana ssp. xolocotziana

    Directory of Open Access Journals (Sweden)

    Magali A. Santillán-Ramírez

    2008-12-01

    Full Text Available El presente trabajo incluye información etnobotánica, así como la arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana (toronjil morado y A. mexicana ssp. xolocotziana (toronjil blanco, con la finalidad de que sean incluidas en la Farmacopea Herbolaria de los Estados Unidos Mexicanos (FHEUM y que sus caracteres anatómicos se utilicen para validar la identidad del material vegetal en el control de calidad. El registro de la información etnobotánica se efectuó por medio de entrevistas semiestructuradas a pobladores del municipio de Temoaya, Estado de México, México. Para el estudio anatómico y arquitectura foliar, se elaboraron preparaciones semipermanentes y permanentes de tallos y hojas. Ambos toronjiles son utilizados por los habitantes de la zona de estudio como recurso terapéutico y de ornato; los distinguen por la forma de las hojas, el color de la flor y el aroma, pero no existen preferencias de uso entre ambos. La arquitectura foliar sigue el patrón acródromo de posición basal con un desarrollo imperfecto; las areolas muestran un desarrollo imperfecto con disposición al azar, con vénulas simples o ramificadas una vez y el margen con dientes cunonioides en ambas especies. Diferencias anatómicas se observan en el tallo y son los tricomas no glandulares uniseriados en mayor abundancia y las bandas de esclerénquima más desarrolladas los caracteres que distinguen a A. mexicana ssp. xolocotziana de A. mexicana ssp. mexicana.This work provides information on ethnobotany, leaf architecture and anatomy of Agastache mexicana ssp. mexicana (toronjil morado and A. mexicana ssp. xolocotziana (toronjil blanco, with the purpose that they will be included in the Pharmacopeia Herbolaria of the Estados Unidos Mexicanos (FHEUM and that their anatomical characters could be used to validate the identity of the botanical material in quality control. We gathered ethnobotanical information using semi

  9. Partial chemical composition and antimicrobial activity of Daucus crinitus Desf. extracts

    Directory of Open Access Journals (Sweden)

    Paolini, J.

    2010-09-01

    Full Text Available The chemical composition of fatty acids and the unsaponifiable fraction of the roots, leaves and stems from Daucus crinitus Desf. were, determined using gas chromatography (GC and gas chromatography-Mass Spectrometry (GC-MS. The fatty acid fractions of different organs (leaves, stems and roots were characterized by lauric acid (17.9, 17.5 and 18.1 % respectively and other long chain fatty acids (until C22. Qualitative and quantitative differences were reported between the unsaponifiable fractions of different organs from D. crinitus. The unsaponifiable fractions of the leaves, roots and stem showed high amounts of aliphatic components (83.4%, 87.2% and 91.4%, respectively. The monoterpen, diterpen and sesquiterpen components were only present in small percentages. The antimicrobial properties of the D. critinus extracts were tested on four different microorganisms. These extracts were found to be active against Bacillus cereus, Staphylococcus aureus, Escherichia coli and Candida albicans.La composición química de los ácidos grasos y la fracción insaponificable de raíces, hojas, y tallos de Daucus crinitus Desf. fueron establecidas utilizando cromatografía de gases (GC y cromatografía de gases-espectrometría de masas (GC-MS. La fracción de ácidos grasos de los diferentes órganos (hojas, tallos y raíces se caracterizó por el ácido láurico (17.9, 17.5 y 18.1% respectivamente y otros ácidos grasos de cadena larga (hasta C22. Diferencias cualitativas y cuantitativas se registraron entre las fracciones insaponificable de los diferentes órganos de D. crinitus. De hecho, las fracciones insaponificable de la raíz, de la hoja y del tallo mostraron cantidades altas de componentes alifáticos (83.4%, 87.2% y 91.4%, respectivamente. Los componentes monoterpénicos, diterpénicos y sesquiterpénicos solo estuvieron presentes en un pequeño porcentaje. Las propiedades antimicrobianas de los extractos de D. critinus fueron ensayadas en cuatro

  10. PENGEMBANGAN SSP TEMATIK INTEGRATIF UNTUK MEMBANGUN KARAKTER KEJUJURAN DAN KEPEDULIAN SISWA SD KELAS II

    Directory of Open Access Journals (Sweden)

    Sri Hariyati Qodriyah

    2015-07-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan perangkat pembelajaran berupa SSP Tematik yang dapat mengembangkan karakter siswa kelas 2 sekolah dasar, meliputi karakter kejujuran dan kepedulian. Penelitian ini merupakan penelitian dan pengembangan yang terdiri dari tujuh tahap, yaitu studi pendahuluan, perencanaan, mengembangkan produk awal, uji coba awal, revisi produk utama, uji coba lapangan, dan revisi terhadap produk operasional. SSP yang dikembangkan dievaluasi oleh seorang ahli materi dan media untuk mengetahui validitasnya. Subjek uji coba berjumlah 90 siswa terdiri dari 23 siswa SD Sonosewu, Kasihan, Bantul, DIY sebagai subjek uji coba terbatas dan 33 siswa untuk kelas control dan 34 siswa untuk kelas eksperimen SD 1 Kadipiro, Kasihan, Bantul, DIY. Hasil penelitian ini berupa SSP yang meliputi: silabus, RPP, LKS, dan lembar penilaian. Hasil evaluasi dari ahli materi dan ahli media untuk menguji tingkat kevalidan SSP menyatakan bahwa SSP yang dikembangkan adalah valid dan berkategori “baik”. Hasil uji coba menunjukkan bahwa SSP yang dikembangkan dinyatakan layak serta memenuhi kriteria praktis dan efektif dalam mengembangkan karakter siswa. Pembelajaran dengan SSP yang dikembangkan mampu mengembangkan karakter kejujuran dan kepedulian. Kata Kunci: SSP, karakter jujur dan peduli   DEVELOPING THEMATIC INTEGRATIVE SSP FOR BUILDING THE CHARACTERS OF HONESTY AND CARE GRADE II STUDENT OF ELEMENTARY SCHOOL Abstract This study aims to produce integrated learning sets in the form of thematic SSP that can develop the characters of honesty and care of grade II students of elementary school. This was a research and development study consisting of seven steps, i.e. preliminary study, planning, preliminary product development, preliminary tryout, main product revision, field tryout, revision of operational product, operational product revision, and revision of the final product. The developed SSP was evaluated by a science subject expert to assess

  11. Chemical Composition Variability of Essential Oils of Daucus gracilis Steinh. from Algeria.

    Science.gov (United States)

    Benyelles, Batoul; Allali, Hocine; El Amine Dib, Mohamed; Djabou, Nassim; Paolini, Julien; Costa, Jean

    2017-02-17

    The chemical compositions of 20 Algerian Daucus gracilis essential oils were investigated using GC-FID, GC/MS, and NMR analyses. Altogether, 47 compounds were identified, accounting for 90-99% of the total oil compositions. The main components were linalool (18; 12.5-22.6%), 2-methylbutyl 2-methylbutyrate (20; 9.2-20.2%), 2-methylbutyl isobutyrate (10; 4.2-12.2%), ammimajane (47; 2.6-37.1%), (E)-β-ocimene (15; 0.2-12.8%) and 3-methylbutyl isovalerate (19; 3.3-9.6%). The chemical composition of the essential oils obtained from separate organs was also studied. GC and GC/MS analysis of D. gracilis leaves and flowers allowed identifying 47 compounds, amounting to 92.3% and 94.1% of total oil composition, respectively. GC and GC/MS analysis of D. gracilis leaf and flower oils allowed identifying linalool (22.7%), 2-methylbutyl 2-methylbutyrate (18.9%), 2-methylbutyl isovalerate (13.6%), ammimajane (10.4%), 3-methylbutyl isovalerate (10.3%), (E)-β-ocimene (8.4%) and isopentyl 2-methylbutyrate (8.1%) as main components. The chemical variability of the Algerian oil samples was studied using statistical analysis, which allowed the discrimination of three main Groups. A direct correlation between the altitudes, nature of soils and the chemical compositions of the D. gracilis essential oils was evidenced. This article is protected by copyright. All rights reserved.

  12. Antibacterial Activity of Daucus crinitus Essential Oils along the Vegetative Life of the Plant

    Directory of Open Access Journals (Sweden)

    Amel Bendiabdellah

    2013-01-01

    Full Text Available The essential oils from the aerial parts of Daucus crinitus Desf. were analyzed at three developmental stages (early vegetative, early flowering, and full flowering. Oil yield was found to vary depending on the stage of development, and the highest content of oil (0.15% w/w was obtained at full flowering. The chemical composition of essential oils studied by GC and GC-MS showed a total of 71 compounds: 27 aliphatic compounds, 18 sesquiterpene hydrocarbons, 9 hydrocarbons monoterpene, 5 oxygenated monoterpenes, 5 phenolic compounds, 4 oxygenated sesquiterpenes, 2 oxygenated diterpenes, and 01 diterpene hydrocarbons. Whatever the analyzed stage, phenolic compounds were the most abundant group. Their level significantly increased during ripening and varied from 36.4 to 82.1%. Antimicrobial activities of oils were tested on four different microorganisms. The oils of various phenological stages showed high activity against Candida albicans (30 mm and Staphylococcus aureus (11–28 mm bacteria strains which are deemed very dangerous and very difficult to eliminate. Thus, they represent an inexpensive source of natural antibacterial substances that may potentially be used in pathogenic systems.

  13. Two new sesquiterpene lactones from Montanoa tomentosa ssp. microcephala.

    Science.gov (United States)

    Braca, A; Cioffi, G; Morelli, I; Venturella, F; Pizza, C; De Tommasi, N

    2001-11-01

    Two new sesquiterpene lactones: 8alpha-(4'-acetoxymethacryloyloxy)-3alpha,9beta-dihydroxy-1(10)E,4Z,11(13)-germacratrien-12,6alpha-olide (1) and 8alpha-(2'E)-(2'-acetoxymethyl-2'-butenoyloxy)-3alpha,9beta-dihydroxy-1(10)E,4Z,11(13)-germacratrien-12,6alphaolide (2), together with the known zoapatanolide A were isolated from the aerial parts of Montanoa tomentosa Cerv. in La Llave et Lex ssp. microcephala (Sch. Bip. In K. Koch) V.A. Funk (Asteraceae). The structures of all compounds were established on the basis of 1D, 2D NMR, and EIMS analysis.

  14. VizieR Online Data Catalog: SSP in NIR. II. Synthesis models (Meneses-Goytia+, 2015)

    NARCIS (Netherlands)

    Meneses-Goytia, S.; Peletier, R. F.; Trager, S. C.; Vazdekis, A.

    2015-01-01

    The present Single Stellar Populations (SSP) models are derived from my Ph.D.'s thesis and this paper. The following nomenclature is used throughout the paper and the website (http://smg.astro-research.net/ssp-models/the-models/) to describe the models, e.g. MarS models use the M08 isochrones (Mar)

  15. Kvalitet, faglighed og legitime videnformer i SSP-samarbejdet under transformation

    DEFF Research Database (Denmark)

    Tamborg, Andreas Lindenskov

    2016-01-01

    Quality, professionalism and legitimate knowledge in a changing SSP-collaboration. This article explores the inter professional collaboration in a crime preventive initiative called SSP, which is a collaboration between school, social work and police. By drawing on interviews of actors from...

  16. Phenolic constituents from the leaves of Cratoxylum formosum ssp. pruniflorum.

    Science.gov (United States)

    Xiong, Juan; Liu, Xin-Hua; Bui, Van-Binh; Hong, Zhi-Lai; Wang, Li-Jun; Zhao, Yun; Fan, Hui; Yang, Guo-Xun; Hu, Jin-Feng

    2014-04-01

    One (formosumone A, 1) new and fifteen (2-16) known phenolic compounds were isolated from the leaves of Cratoxylum formosum ssp. pruniflorumm, a substitute for the popular bitter nail tea ("Kuding Tea") generally used in Southeast Asia. Their structures were determined by extensive spectroscopic analysis and by comparison with literature data. Compound 1 possesses a rare scaffold of a flavanone coupled with a phloroglucinol moiety, representing the first example of such a scaffold from the Clusiaceae family. Among the isolates, toxyloxanthone B (11) and vismione D (12) were found to show remarkable anti-neuroinflammatory effects by inhibiting nitric oxide (NO) production in lipopolysaccharide (LPS)-stimulated murine BV-2 microglial cells. Additionally, toxyloxanthone B (11) exhibited significant neuroprotective effect against β-amyloid(25-35) (Aβ(25-35))-induced cell viability decrease in SH-SY5Y neuroblastoma cells. Copyright © 2014 Elsevier B.V. All rights reserved.

  17. Bactericidal Influence of Silver Nanocomposites on Clavibacter michiganensis ssp. sepedonicus

    Directory of Open Access Journals (Sweden)

    Perfileva А.I.

    2016-05-01

    Full Text Available The results of studying the effect of silver nanocomposites received by chemical synthesis on the bacterium Clavibacter michiganensis ssp. sepedonicus (Cms are presented. Cms is a Gram-positive bacterium, which causes one of the most dangerous potato diseases, ring rot. The effective alongside ecologically safe methods for combating Cms are lacking. As the agent, possible for application for this purpose, we investigated silver nanocomposites. For definition of nanocomposites influence on Cms we applied seedings to calculation the colony-forming units, after an incubation of bacteria with a nanocomposite in the distilled water (the grown poor environment and on a nutrient medium. Influence of silver nanocomposites on cellular respiration which was estimated on oxygen absorption speed is also investigated. Thus, the obtained results demonstrate the occurrence of bactericidal effects of the substances under study, and favor the supposition on advisability of further research into the silver nanocomposites as the agents for agricultural recovery from the bacterial pathogens.

  18. Functional characterization of gynodioecy in Fragaria vesca ssp. bracteata (Rosaceae)

    Science.gov (United States)

    Li, Junmin; Koski, Matthew H.; Ashman, Tia-Lynn

    2012-01-01

    Background and Aims Gynodioecy is a phylogenetically widespread and important sexual system where females coexist with hermaphrodites. Because dioecy can arise from gynodioecy, characterization of gynodioecy in close relatives of dioecious and sub-dioecious species can provide insight into this transition. Thus, we sought to determine whether Fragaria vesca ssp. bracteata, a close relative to F. chiloensis and F. virginiana, exhibits the functional and population genetic hallmarks of a gynodioecious species. Methods We compared reproductive allocation of females and hermaphrodites grown in the greenhouse and estimated genetic diversity (allelic diversity, heterozygosity) and inbreeding coefficients for field-collected adults of both sexes using simple sequence repeat (SSR) markers. We estimated mating system and early seed fitness from open-pollinated families of both sex morphs. Key Results Under greenhouse conditions, females and hermaphrodites allocated similarly to all reproductive traits except flower number, and, as a consequence, females produced 30 % fewer seeds per plant than hermaphrodites. Under natural conditions, hermaphrodites produce seeds by self-fertilization approx. 75 % of the time, and females produced outcrossed seeds with very little biparental inbreeding. Consistent with inbreeding depression, seeds from open-pollinated hermaphrodites were less likely to germinate than those from females, and family-level estimates of hermaphrodite selfing rates were negatively correlated with germination success and speed. Furthermore, estimates of inbreeding depression based on genetic markers and population genetic theory indicate that inbreeding depression in the field could be high. Conclusions The joint consideration of allocation and mating system suggests that compensation may be sufficient to maintain females given the current understanding of sex determination. Fragaria vesca ssp. bracteata exhibited similar sex morph-dependent patterns of mating

  19. Phytochemical analysis of the flower extracts of Rhododendron arboreum Sm. ssp. nilagiricum (Zenker) Tagg

    Institute of Scientific and Technical Information of China (English)

    Kiruba S; Mahesh M; Nisha SR; Miller Paul Z; Jeeva S

    2011-01-01

    Objective: To evaluate the preliminary phytochemical screening of the flower extracts of Rhododendron arboreum (R. arboreum) Sm. ssp. nilagiricum (Zenker) Tagg. Methods: The preliminary phytochemical screening was performed by the standard methods as described by Harborne. Results: The phytochemical analysis carried out on the flowers of R. arboreum Sm. ssp. nilagiricum (Zenker) Tagg showed the presence of phenols, saponins, steroids, tannin, xanthoprotein and coumarin. Conclusions:The present study suggested that the flower extracts of R. arboreum Sm. ssp. nilagiricum (Zenker) Tagg possess significant phytochemical constituents and it can be used as antimicrobial agents against clinically isolated pathogens.

  20. Preliminary phytochemical studies of the leaf extracts of Rhododendron arboreum Sm. ssp. nilagiricum (Zenker) Tagg

    Institute of Scientific and Technical Information of China (English)

    Solomon Kiruba; Mony Mahesh; Zachariah Miller Paul; Solomon Jeeva

    2012-01-01

    Objective: To examine the secondary metabolites present in the leaf extracts of Rhododendron arboreum Sm. ssp. nilagiricum (Zenker) Tagg. Methods: Phytochemical screening of the leaf extract was done to determine the phytochemical constituents in the various solvents studied.Results:nilagiricum (Zenker) Tagg. confirm the existence of secondary metabolites such as phenols, saponins and tannins. Conclusions: The study suggests that the leaf extracts of R. arboreum Sm. ssp. nilagiricum (Zenker) Tagg. can be best utilized in developing bioactive compounds against pathogenic infection. The phytochemical study carried out on the leaf extracts of R. arboreum Sm. ssp.

  1. Final Critical Habitat for the Kincaid's lupine (Lupinus sulphureus (=oreganus) ssp. kincaidii (=var. kincaidii))

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These data identify, in general, the areas where final critical habitat for the Kincaid's lupine (Lupinus sulphureus (=oreganus) ssp. kincaidii (=var. kincaidii))...

  2. Three QTLs from Lycopersicum peruvianum confer a high level of resistance to Clavibacter michiganensis ssp. michiganensis

    NARCIS (Netherlands)

    Heusden, A.W.; Koornneef, M.; Voorrips, R.E.; Bruggeman, W.; Pet, G.; Vrielink, R.; Chen, X.; Lindhout, P.

    1999-01-01

    Lycopersicon peruvianum LA2157 originates from 1650 m above sea level and harbours several beneficial traits for cultivated tomatoes such as cold tolerance, nematode resistance and resistance to bacterial canker (Clavibacter michiganensis ssp. michiganensis). In order to identify quantitative trait

  3. Final Critical Habitat for the Kincaid's lupine (Lupinus sulphureus (=oreganus) ssp. kincaidii (=var. kincaidii))

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These data identify, in general, the areas where final critical habitat for the Kincaid's lupine (Lupinus sulphureus (=oreganus) ssp. kincaidii (=var. kincaidii))...

  4. An abstract class loader for the SSP and its implementation in TL.

    Energy Technology Data Exchange (ETDEWEB)

    Wickstrom, Gregory Lloyd; Winter, Victor Lono (University of Nebraska at Omaha, Omaha, NE); Fraij, Fares (University of Texas at El Paso, El Paso, TX); Roach, Steve (University of Texas at El Paso, El Paso, TX); Beranek, Jason (University of Nebraska at Omaha, Omaha, NE)

    2004-08-01

    The SSP is a hardware implementation of a subset of the JVM for use in high consequence embedded applications. In this context, a majority of the activities belonging to class loading, as it is defined in the specification of the JVM, can be performed statically. Static class loading has the net result of dramatically simplifying the design of the SSP as well as increasing its performance. Due to the high consequence nature of its applications, strong evidence must be provided that all aspects of the SSP have been implemented correctly. This includes the class loader. This article explores the possibility of formally verifying a class loader for the SSP implemented in the strategic programming language TL. Specifically, an implementation of the core activities of an abstract class loader is presented and its verification in ACL2 is considered.

  5. MySSP: non-stationary evolutionary sequence simulation, including indels.

    Science.gov (United States)

    Rosenberg, Michael S

    2007-02-26

    MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.

  6. Evaluación de la calidad funcional y sensorial en cultivares de Triticum aestivum ssp. vulgare y ssp. spelta en cultivo ecológico

    OpenAIRE

    Vargas Kostiuk, María Eugenia

    2016-01-01

    En esta Tesis Doctoral se ha estudiado la influencia del cultivar sobre el comportamiento reológico y panadero de cinco cultivares de trigo sembrados en el mismo año y en el mismo ambiente, en condiciones de cultivo ecológico. Tres de ellos eran de trigo panadero (Triticum aestivum ssp. vulgare), ‘Bonpain’, ‘Craklin’ y ‘Sensas’ y los otros dos de trigo espelta (Triticum aestivum ssp. spelta), ‘Espelta Álava’ y ‘Espelta Navarra’. Actualmente, el alohexaploide trigo panadero (2n=6x=42 genomio A...

  7. Estudio etnobotánico, arquitectura foliar y anatomía vegetativa de Agastache mexicana ssp. mexicana y A. mexicana ssp. xolocotziana

    OpenAIRE

    Magali A. Santillán-Ramírez; Ma. Edith López-Villafranco; Silvia Aguilar-Rodríguez; Abigail Aguilar-Contreras

    2008-01-01

    El presente trabajo incluye información etnobotánica, así como la arquitectura foliar y anatomíavegetativa de Agastache mexicana ssp. mexicana (toronjil morado) y A. mexicana ssp. xolocotziana (toronjil blanco), con la finalidad de que sean incluidas en la Farmacopea Herbolaria de los Estados Unidos Mexicanos (FHEUM) y que sus caracteres anatómicos se utilicen para validar la identidad del material vegetal en el control de calidad. El registro de la información etnobotánica se efectuó por me...

  8. Aplicación de tratamiento térmico, recubrimiento comestible y baño químico como tratamientos poscosecha para la conservación de hortalizas mínimamente procesadas

    National Research Council Canada - National Science Library

    Escobar Hernández, Alejandro; Márquez Cardozo, Carlos Julio; Restrepo Flores, Claudia Estela; Cano Salazar, Jaime Andrés; Patiño Gómez, Jairo Humberto

    2014-01-01

    ... mínimamente procesadas: brócoli (Brassica oleracea var. Itálica), coliflor (Brassica oleracea var. Botrytis), zucchini (Cucurbita pepo L.), apio (Apium graveolens), zanahoria (Daucus carota) y chayote (Sechium edule...

  9. Characterization of volatile compounds of Daucus crinitus Desf. Headspace Solid Phase Microextraction as alternative technique to Hydrodistillation

    OpenAIRE

    Tabti Boufeldja; Allali Houcine; Desjobert Jean-Marie; Djabou Nassim; El Amine Dib Mohammed; Muselli Alain; Costa Jean

    2010-01-01

    Background : Traditionally, the essential oil of aromatic herbs is obtained using hydrodistillation (HD). Because the emitted volatile fraction plays a fundamental role in a plant's life, various novel techniques have been developed for its extraction from plants. Among these, headspace solid phase microextraction (HS-SPME) can be used to obtain a rapid fingerprint of a plant's headspace. Daucus crinitus Desf. is a wild plant that grows along the west coast of Algeria. Only a single study ...

  10. A sporulation-specific, sigF-dependent protein, SspA, affects septum positioning in Streptomyces coelicolor.

    Science.gov (United States)

    Tzanis, Angelos; Dalton, Kate A; Hesketh, Andrew; den Hengst, Chris D; Buttner, Mark J; Thibessard, Annabelle; Kelemen, Gabriella H

    2014-01-01

    The RNA polymerase sigma factor SigF controls late development during sporulation in the filamentous bacterium Streptomyces coelicolor. The only known SigF-dependent gene identified so far, SCO5321, is found in the biosynthetic cluster encoding spore pigment synthesis. Here we identify the first direct target for SigF, the gene sspA, encoding a sporulation-specific protein. Bioinformatic analysis suggests that SspA is a secreted lipoprotein with two PepSY signature domains. The sspA deletion mutant exhibits irregular sporulation septation and altered spore shape, suggesting that SspA plays a role in septum formation and spore maturation. The fluorescent translational fusion protein SspA-mCherry localized first to septum sites, then subsequently around the surface of the spores. Both SspA protein and sspA transcription are absent from the sigF null mutant. Moreover, in vitro transcription assay confirmed that RNA polymerase holoenzyme containing SigF is sufficient for initiation of transcription from a single sspA promoter. In addition, in vivo and in vitro experiments showed that sspA is a direct target of BldD, which functions to repress sporulation genes, including whiG, ftsZ and ssgB, during vegetative growth, co-ordinating their expression during sporulation septation.

  11. SSP: an interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads.

    Science.gov (United States)

    Safikhani, Zhaleh; Sadeghi, Mehdi; Pezeshk, Hamid; Eslahchi, Changiz

    2013-01-01

    Recent advances in the sequencing technologies have provided a handful of RNA-seq datasets for transcriptome analysis. However, reconstruction of full-length isoforms and estimation of the expression level of transcripts with a low cost are challenging tasks. We propose a novel de novo method named SSP that incorporates interval integer linear programming to resolve alternatively spliced isoforms and reconstruct the whole transcriptome from short reads. Experimental results show that SSP is fast and precise in determining different alternatively spliced isoforms along with the estimation of reconstructed transcript abundances. The SSP software package is available at http://www.bioinf.cs.ipm.ir/software/ssp.

  12. A modified PCR-SSP method for the identification of ABO blood group antigens.

    Science.gov (United States)

    Downing, J; Darke, C

    2003-08-01

    The ABO blood group antigens are carbohydrate molecules synthesized by the glycosyltransferases encoded by the ABO gene on chromosome 9. Kidney transplantation across the ABO barrier generally leads to rapid humoral graft rejection due to the presence of naturally occurring antibodies to the A and B antigens. We have developed a method for ABO typing our cadaveric organ donors by the polymerase chain reaction using sequence-specific primers (PCR-SSP). The method uses 12 primers in eight PCR mixtures and is performed under the same conditions as our routine HLA-A, B, C PCR-SSP typing. The PCR-SSP-based types of 166 regular blood donors and 148 cadaveric organ donors all showed total concordance with their serologically assigned ABO groups. Six individuals possessing the ABO A subgroups (A3, Ax and Aend) all typed as A1 by PCR-SSP, as expected. PCR-SSP is an appropriate method for ABO typing of cadaveric organ donors and, importantly, enables both ABO and HLA typing to be performed on the same DNA material.

  13. The P-SSP7 cyanophage has a linear genome with direct terminal repeats.

    Science.gov (United States)

    Sabehi, Gazalah; Lindell, Debbie

    2012-01-01

    P-SSP7 is a T7-like phage that infects the cyanobacterium Prochlorococcus MED4. MED4 is a member of the high-light-adapted Prochlorococcus ecotypes that are abundant in the surface oceans and contribute significantly to primary production. P-SSP7 has become a model system for the investigation of T7-like phages that infect Prochlorococcus. It was classified as T7-like based on genome content and organization. However, because its genome assembled as a circular molecule, it was thought to be circularly permuted and to lack the direct terminal repeats found in other T7-like phages. Here we sequenced the ends of the P-SSP7 genome and found that the genome map is linear and contains a 206 bp repeat at both genome ends. Furthermore, we found that a 728 bp region of the genome originally placed downstream of the last ORF is actually located upstream of the first ORF on the genome map. These findings suggest that P-SSP7 is likely to use the direct terminal repeats for genome replication and packaging in a similar manner to other T7-like phages. Moreover, these results highlight the importance of experimentally verifying the ends of phage genomes, and will facilitate the use of P-SSP7 as a model for the correct assembly and end determination of the many T7-like phages isolated from the marine environment that are currently being sequenced.

  14. The P-SSP7 cyanophage has a linear genome with direct terminal repeats.

    Directory of Open Access Journals (Sweden)

    Gazalah Sabehi

    Full Text Available P-SSP7 is a T7-like phage that infects the cyanobacterium Prochlorococcus MED4. MED4 is a member of the high-light-adapted Prochlorococcus ecotypes that are abundant in the surface oceans and contribute significantly to primary production. P-SSP7 has become a model system for the investigation of T7-like phages that infect Prochlorococcus. It was classified as T7-like based on genome content and organization. However, because its genome assembled as a circular molecule, it was thought to be circularly permuted and to lack the direct terminal repeats found in other T7-like phages. Here we sequenced the ends of the P-SSP7 genome and found that the genome map is linear and contains a 206 bp repeat at both genome ends. Furthermore, we found that a 728 bp region of the genome originally placed downstream of the last ORF is actually located upstream of the first ORF on the genome map. These findings suggest that P-SSP7 is likely to use the direct terminal repeats for genome replication and packaging in a similar manner to other T7-like phages. Moreover, these results highlight the importance of experimentally verifying the ends of phage genomes, and will facilitate the use of P-SSP7 as a model for the correct assembly and end determination of the many T7-like phages isolated from the marine environment that are currently being sequenced.

  15. COMPARISON OF HLA CLASS I ANIIGEN BY SEROLOGY AND PCR- SSP TYPING

    Institute of Scientific and Technical Information of China (English)

    谭建明; 唐孝达; 谢桐

    1999-01-01

    Objeetive A dcuble blind study was canied cut to evaluate the relative performance and reliability of PCR-SSP assay compared to standard serollgical typing in identifying HLA class I alleles in Chinses population, Methods A total of 525 consecutive samples were entered into the study-HLA-A and B antigens were typed by serology with two - stage microlympbocytotoxicity and by PCR arnplification with sequence - specific primers, Reliability, reproducibility and clinical practicability wine compared acocrding to typing results by both methods. Results All sarnples were successfully typed by both methods THe serological discrepancy far HLA - A was 8.95 %, consisting of 21 antigens being iocorrectly interpreced and 26 of serologic blankx tuming out to be second definable alleles by SSP typing, Misassignments of HLA-B by serology were 12.19%. In 4.8% (25/525)a serologic blank tumed out to be a definable allele by SSP, while in 7,4 % (39/525) an allele was incorrectly interpreted by serology. The results of this study study showed that PCR- SSP technique could proved ta be equivalent to or surpass deal serology, suitable for routine clinical typing of patients and donors for transplantation. Conclusion PCR-SSP typing for HLA-A and B araigens could offer the advantages 4 hettre reagent availability and greater precision than setology in Chinese population, It is necessary to adopt the DNA typing for HLA class I in whcm serology often fails with“blank”,“difficult", or cross-reactive antigens.

  16. Versatile modes of peptide recognition by the AAA+ adaptor protein SspB

    Energy Technology Data Exchange (ETDEWEB)

    Levchenko, Igor; Grant, Robert A.; Flynn, Julia M.; Sauer, Robert T.; Baker, Tania A. (MIT)

    2010-07-19

    Energy-dependent proteases often rely on adaptor proteins to modulate substrate recognition. The SspB adaptor binds peptide sequences in the stress-response regulator RseA and in ssrA-tagged proteins and delivers these molecules to the AAA+ ClpXP protease for degradation. The structure of SspB bound to an ssrA peptide is known. Here, we report the crystal structure of a complex between SspB and its recognition peptide in RseA. Notably, the RseA sequence is positioned in the peptide-binding groove of SspB in a direction opposite to the ssrA peptide, the two peptides share only one common interaction with the adaptor, and the RseA interaction site is substantially larger than the overlapping ssrA site. This marked diversity in SspB recognition of different target proteins indicates that it is capable of highly flexible and dynamic substrate delivery.

  17. Staphylococcus saprophyticus surface-associated protein (Ssp) is associated with lifespan reduction in Caenorhabditis elegans.

    Science.gov (United States)

    Szabados, Florian; Mohner, Amelie; Kleine, Britta; Gatermann, Sören G

    2013-10-01

    Staphylococcal lipases have been proposed as pathogenicity factors. In Staphylococcus saprophyticus the surface-associated protein (Ssp) has been previously characterized as a cell wall-associated true lipase. A S. saprophyticus Δssp::ermB mutant has been described as less virulent in an in vivo model of urinary tract infection compared with its wild-type. This is the first report showing that S. saprophyticus induced a lifespan reduction in Caenorhabditis elegans similar to that of S. aureus RN4220. In two S. saprophyticus Δssp::ermB mutants lifespan reduction in C. elegans was partly abolished. In order to attribute virulence to the lipase activity itself and distinguish this phenomenon from the presence of the Ssp-protein, the conserved active site of the lipase was modified by site-directed ligase-independent mutagenesis and lipase activity-deficient mutants were constructed. These results indicate that the Ssp is associated with pathogenicity in C. elegans and one could speculate that the lipase activity itself is responsible for this virulence.

  18. Chemical characterization of leaves of organically grown carrot Dacus carota L. in various stages of development for use as food

    Directory of Open Access Journals (Sweden)

    Camila Wihby Leite

    2011-09-01

    Full Text Available In Brazil, street markets and vegetable distributors discard vegetable leaves and stems, including those of carrot (Dacus carota L.. Seeking to reduce the waste of vegetable parts, this study characterized chemically the leaves of organically grown carrot in three stages of development to determine the best time for their removal and consumption as food. The leaves were dehydrated in an oven at 70 °C for 43 hours and analyzed for chemical composition, antioxidant activity, chlorophyll content, fatty acid composition, and also calcium (Ca, sodium (Na, potassium (K, magnesium (Mg, manganese (Mn, iron (Fe, zinc (Zn, and copper (Cu contents. The analyses indicated 100 days of development as the ideal stage for the removal and consumption of carrot leaves with good antioxidant activity requiring only 63.78 ± 0.5 mg.L-1 methanol leaf extract to inhibit 50% of the concentration of the free radical DPPH (2,2-diphenyl-1picrilidrazil, and total protein and alpha-linolenic acid (18:3 n-3/LNA contents of 18.23% ± 2.8 and 876.55 ± 20.62 mg.100 g-1 of dry matter, respectively.

  19. Assessment of Applying the PMaC Prediction Framework to NERSC-5 SSP Benchmarks

    Energy Technology Data Exchange (ETDEWEB)

    Keen, Noel

    2006-09-30

    NERSC procurement depends on application benchmarks, in particular the NERSC SSP. Machine vendors are asked to run SSP benchmarks at various scales to enable NERSC to assess system performance. However, it is often the case that the vendor cannot run the benchmarks at large concurrency as it is impractical to have that much hardware available. Additionally, there may be difficulties in porting the benchmarks to the hardware. The Performance Modeling and Characterization Lab (PMaC) at San Diego Supercomputing Center (SDSC) have developed a framework to predict the performance of codes on large parallel machines. The goal of this work was to apply the PMaC prediction framework to the NERSC-5 SSP benchmark applications and ultimately consider the accuracy of the predictions. Other tasks included identifying assumptions and simplifications in the process, determining the ease of use, and measuring the resources required to obtain predictions.

  20. The tomato pathogen Clavibacter michiganensis ssp. michiganensis: producer of several antimicrobial substances.

    Science.gov (United States)

    Holtsmark, I; Mantzilas, D; Eijsink, V G H; Brurberg, M B

    2007-02-01

    To purify and analyse antimicrobial substances produced by the tomato pathogen Clavibacter michiganensis ssp. michiganensis (Cmm), with potential application in control of Clavibacter michiganensis ssp. sepedonicus (Cms), the causal agent of bacterial ring rot of potato. After selection of a suitable producer and indicator strain, antimicrobial compounds were isolated using chromatographic techniques. The resulting preparations were analysed with respect to heat and protease sensitivity, amino acid composition, amino acid sequence and mass. Using this procedure we discovered one post-translationally modified 2145 Da peptide bacteriocin, one 14 kDa antimicrobial protein as well as low molecular weight (Clavibacter michiganensis ssp. michiganensis produces various antibacterial substances that are active against Cms. This study describes the first attempt to characterize antimicrobial substances from Cmm at the molecular level. This is an important step towards investigation of the possible use of these compounds to control the potato ring rot pathogen.

  1. Optimal Control Strategy for Marine Ssp Podded Propulsion Motor Based on Strong Tracking-Epf

    Directory of Open Access Journals (Sweden)

    Yao Wenlong

    2015-09-01

    Full Text Available Aiming at the non-linearity of state equation and observation equation of SSP (Siemen Schottel Propulsor propulsion motor, an improved particle filter algorithm based on strong tracking extent Kalman filter (ST-EKF was presented, and it was imported into the marine SSP propulsion motor control system. The strong tracking filter was used to update particles in the new algorithm and produce importance densities. As a result, the problems of particle degeneracy and sample impoverishment were ameliorated, the propulsion motor states and the rotor resistance were estimated simultaneously using strong track filter (STF, and the tracking ability of marine SSP propulsion motor control system was improved. Simulation result shown that the improved EPF algorithm was not only improving the prediction accuracy of the motor states and the rotor resistance, but also it can satisfy the requirement of navigation in harbor. It had the better accuracy than EPF algorithm.

  2. The transfer RNA genes in Oryza sativa L.ssp.indica

    Institute of Scientific and Technical Information of China (English)

    WANG; Xiyin(王希胤); SHI; Xiaoli(史晓黎); HAO; Bailin(郝柏林)

    2002-01-01

    The availability of the draft genome sequence of Oryza sativa L. ssp. indica has made it possible to study the rice tRNA genes. A total of 596 tRNA genes, including 3 selenocysteine tRNA genes and one suppressor tRNA gene are identified in 127551 rice contigs. There are 45 species of tRNA genes and the revised wobble hypothesis proposed by Guthrie and Abelson is perfectly obeyed. The relationship between codon usage and the number of corresponding tRNA genes is discussed. Redundancy may exist in the present list of tRNA genes and novel ones may be found in the future. A set of 33 tRNA genes is discovered in the complete chloroplast genome of Oryza sativa L. ssp. indica. These tRNA genes are identical to those in ssp. japonica identified by us independently from the origional annotation.

  3. A Novel Bluetooth Man-In-The-Middle Attack Based On SSP using OOB Association model

    CERN Document Server

    Saravanan, K; Negesh, R K

    2012-01-01

    As an interconnection technology, Bluetooth has to address all traditional security problems, well known from the distributed networks. Moreover, as Bluetooth networks are formed by the radio links, there are also additional security aspects whose impact is yet not well understood. In this paper, we propose a novel Man-In-The-Middle (MITM) attack against Bluetooth enabled mobile phone that support Simple Secure Pairing(SSP). From the literature it was proved that the SSP association models such as Numeric comparison, Just works and passkey Entry are not more secure. Here we propose the Out Of Band (OOB) channeling with enhanced security than the previous methods.

  4. Analysis of COPII Vesicles Indicates a Role for the Emp47-Ssp120 Complex in Transport of Cell Surface Glycoproteins.

    Science.gov (United States)

    Margulis, Neil G; Wilson, Joshua D; Bentivoglio, Christine M; Dhungel, Nripesh; Gitler, Aaron D; Barlowe, Charles

    2016-03-01

    Coat protein complex II (COPII) vesicle formation at the endoplasmic reticulum (ER) transports nascent secretory proteins forward to the Golgi complex. To further define the machinery that packages secretory cargo and targets vesicles to Golgi membranes, we performed a comprehensive proteomic analysis of purified COPII vesicles. In addition to previously known proteins, we identified new vesicle proteins including Coy1, Sly41 and Ssp120, which were efficiently packaged into COPII vesicles for trafficking between the ER and Golgi compartments. Further characterization of the putative calcium-binding Ssp120 protein revealed a tight association with Emp47 and in emp47Δ cells Ssp120 was mislocalized and secreted. Genetic analyses demonstrated that EMP47 and SSP120 display identical synthetic positive interactions with IRE1 and synthetic negative interactions with genes involved in cell wall assembly. Our findings support a model in which the Emp47-Ssp120 complex functions in transport of plasma membrane glycoproteins through the early secretory pathway.

  5. PENGEMBANGAN SSP FISIKA BERBASIS PENDEKATAN CTL UNTUK MENINGKATKAN KETERAMPILAN PROSES SAINS DAN MOTIVASI BELAJAR

    Directory of Open Access Journals (Sweden)

    Faiq Makhdum Noor

    2015-04-01

    Full Text Available This research aims to develop a learning device as Subject-Specific Pedagogy (SSP of physics, and to improve science process skills and learning motivation of the students. This research used the 4D model. The subjects of this research were the XI grade students of Muhammadiyah High School 2 Yogyakarta. The data collecting instruments were expert validation sheets, science process skill observation sheets, questionnaire of students’ response to the student books and worksheets, question-naire of students’ response to teaching process, students’ motivation learning sheets, and science process skill paper test. The research data were collected through observation, questionnaire, and paper test, and analyzed quantitatively. The results show as follows. (1 The development of physics SSP is carried out in accordance with the procedures of 4D model product development. (2 The results of expert’s validation show the physics SSP is in the very good criteria. (3 The readability of the student books and worksheets is in the good criteria. (4 The increasing of the score of science process skills and students’ learning motivation in the experimental class is higher than that in the control class. This shows that the physics SSP is fit for use in physics teaching.

  6. Megastigmane Glucosides and Megastigmanes from the Leaves of Meliosma lepidota ssp. squamulata.

    Science.gov (United States)

    Uemura, Yuka; Iwami, Mio; Kawakami, Susumu; Sugimoto, Sachiko; Matsunami, Katsuyoshi; Otsuka, Hideaki; Shinzato, Takakazu; Kawahata, Masatoshi; Yamaguchi, Kentaro

    2015-01-01

    From the leaves of Meliosma lepidota ssp. squamulata, megastigmane glucosides with spiro-structures and megastigmanes were isolated. Their structures were determined by X-ray crystallographic analyses and spectroscopic investigation. The absolute structures of the megastigmanes were determined by the modified Mosher's method.

  7. Chemical Composition of the Essential Oil of Teucrium flavum ssp. flavum from Zakynthos, Greece

    Directory of Open Access Journals (Sweden)

    Carmen Formisano

    2012-03-01

    Full Text Available Essential oil extracted from dried aerial parts of Teucrium flavum ssp. flavum harvested in Zakynthos, Greece, was analysed by gas phase chomatography (GC and gas chomatography mass spectrometry (GC-MS. The main constituents were caryophyllene (13.5%, caryophyllene oxide (8.5%, 4-vinyl guaiacol (6.0% and α-humulene (5.0%.

  8. Identification of functional candidates amongst hypothetical proteins of Treponema pallidum ssp. pallidum.

    Science.gov (United States)

    Naqvi, Ahmad Abu Turab; Shahbaaz, Mohd; Ahmad, Faizan; Hassan, Md Imtaiyaz

    2015-01-01

    Syphilis is a globally occurring venereal disease, and its infection is propagated through sexual contact. The causative agent of syphilis, Treponema pallidum ssp. pallidum, a Gram-negative sphirochaete, is an obligate human parasite. Genome of T. pallidum ssp. pallidum SS14 strain (RefSeq NC_010741.1) encodes 1,027 proteins, of which 444 proteins are known as hypothetical proteins (HPs), i.e., proteins of unknown functions. Here, we performed functional annotation of HPs of T. pallidum ssp. pallidum using various database, domain architecture predictors, protein function annotators and clustering tools. We have analyzed the sequences of 444 HPs of T. pallidum ssp. pallidum and subsequently predicted the function of 207 HPs with a high level of confidence. However, functions of 237 HPs are predicted with less accuracy. We found various enzymes, transporters, binding proteins in the annotated group of HPs that may be possible molecular targets, facilitating for the survival of pathogen. Our comprehensive analysis helps to understand the mechanism of pathogenesis to provide many novel potential therapeutic interventions.

  9. Full Scale Test SSP 34m blade, Combined load. Data report

    DEFF Research Database (Denmark)

    Nielsen, Per Hørlyk; Nielsen, Magda; Jensen, Find Mølholt;

    This report is part of the research project entitled “Eksperimentel vingeforskning: Strukturelle mekanismer i nutidens og fremtidens store vinger under kombineret last” where a 34m wind turbine blade from SSP-Technology A/S was tested in combined flap and edgewise load. The applied load is 55% of...

  10. Proteomic analysis of bronchoalveolar lavage fluid proteins from mice infected with Francisella tularensis ssp novicida

    Energy Technology Data Exchange (ETDEWEB)

    Varnum, Susan M.; Webb-Robertson, Bobbie-Jo M.; Pounds, Joel G.; Moore, Ronald J.; Smith, Richard D.; Frevert, Charles; Skerret, Shawn J.; Wunschel, David S.

    2012-07-06

    Francisella tularensis causes the zoonosis tularemia in humans and is one of the most virulent bacterial pathogens. We utilized a global proteomic approach to characterize protein changes in bronchoalveolar lavage fluid from mice exposed to one of three organisms, F. tularensis ssp. novicida, an avirulent mutant of F. tularensis ssp. novicida (F.t. novicida-ΔmglA); and Pseudomonas aeruginosa. The composition of BALF proteins was altered following infection, including proteins involved in neutrophil activation, oxidative stress and inflammatory responses. Components of the innate immune response were induced including the acute phase response and the complement system, however the timing of their induction varied. Francisella tularensis ssp. novicida infected mice do not appear to have an effective innate immune response in the first hours of infection, however within 24 hours they show an upregulation of innate immune response proteins. This delayed response is in contrast to P. aeruginosa infected animals which show an early innate immune response. Likewise, F.t. novicida-ΔmglA infection initiates an early innate immune response, however this response is dimished by 24 hours. Finally, this study identifies several candidate biomarkers, including Chitinase 3-like-1 (CHI3L1 or YKL-40) and peroxiredoxin 1, that are associated with F. tularensis ssp. novicida but not P. aeruginosa infection.

  11. Second generation bioethanol production from Saccharum spontaneum L. ssp. aegyptiacum (Willd.) Hack.

    Science.gov (United States)

    Danilo Scordia; Salvatore L. Consentino; Thomas W. Jeffries

    2010-01-01

    Saccharum (Saccharum spontaneum L. ssp. aegyptiacum (Willd.) Hack.), is a rapidly growing, wide ranging high-yield perennial, suitable for second generation bioethanol production. This study evaluated oxalic acid as a pretreatment for bioconversion. Overall sugar yields, sugar degradation products, enzymatic glucan hydrolysis and ethanol production were studied as...

  12. Attempting to restore mountain big sagebrush (Artemisia tridentata ssp. vaseyana) four years after fire

    Science.gov (United States)

    Restoration of shrubs is increasingly needed throughout the world because of altered fire regimes, anthropogenic disturbance, and over-utilization. The native shrub mountain big sagebrush (Artemisia tridentata Nutt. ssp. vaseyana (Rydb.) Beetle) is a restoration priority in western North America be...

  13. Summary of Recent Results from NASA's Space Solar Power (SSP) Programs and the Current Capabilities of Microwave WPT Technology

    Science.gov (United States)

    McSpadden, James; Mankins, John C.; Howell, Joe T. (Technical Monitor)

    2002-01-01

    The concept of placing enormous solar power satellite (SPS) systems in space represents one of a handful of new technological options that might provide large-scale, environmentally clean base load power into terrestrial markets. In the US, the SPS concept was examined extensively during the late 1970s by the U.S. Department of Energy (DOE) and the National Aeronautics and Space Administration (NASA). More recently, the subject of space solar power (SSP) was reexamined by NASA from 1995-1997 in the "fresh look" study, and during 1998 in an SSP "concept definition study". As a result of these efforts, in 1999-2000, NASA undertook the SSP Exploratory Research and Technology (SERT) program which pursued preliminary strategic technology research and development to enable large, multi-megawatt SSP systems and wireless power transmission (WPT) for government missions and commercial markets (in-space and terrestrial). During 2001-2002, NASA has been pursuing an SSP Concept and Technology Maturation (SCTM) program follow-on to the SERT, with special emphasis on identifying new, high-leverage technologies that might advanced the feasibility of future SSP systems. In addition, in 2001, the U.S. National Research Council (NRC) released a major report providing the results of a peer review of NASA's SSP strategic research and technology (R&T) road maps. One of the key technologies needed to enable the future feasibility of SSP/SPS is that of wireless power transmission. Advances in phased array antennas and rectennas have provided the building blocks for a realizable WPT system. These key components include the dc-RF converters in the transmitter, the retrodirective beam control system, and the receiving rectenna. Each subject is briefly covered, and results from the SERT program that studied a 5.8 GHz SPS system are presented. This paper presents a summary results from NASA's SSP efforts, along with a summary of the status of microwave WPT technology development.

  14. A sporulation-specific, sigF-dependent protein, SspA, affects septum positioning in Streptomyces coelicolor

    OpenAIRE

    2013-01-01

    The RNA polymerase sigma factor SigF controls late development during sporulation in the filamentous bacterium Streptomyces coelicolor. The only known SigF-dependent gene identified so far, SCO5321, is found in the biosynthetic cluster encoding spore pigment synthesis. Here we identify the first direct target for SigF, the gene sspA, encoding a sporulation-specific protein. Bioinformatic analysis suggests that SspA is a secreted lipoprotein with two PepSY signature domains. The sspA deletion ...

  15. Chemical analysis, antimicrobial and anti-oxidative properties of Daucus gracilis essential oil and its mechanism of action

    Institute of Scientific and Technical Information of China (English)

    Meriem El Kolli; Hocine Laouer; Hayet El Kolli; Salah Akkal; Farida Sahli

    2016-01-01

    Objective: To evaluate the essential oils (EO) composition, antimicrobial and antioxi-dant power of a local plant, Daucus gracilis (D. gracilis). Methods: The aerial parts of D. gracilis were subjected to hydro distillation by a Cle-venger apparatus type to obtain the EO which had been analyzed by gas chromatography and gas chromatography coupled with mass spectrometry, and screened for antimicrobial activity against five bacteria and three fungi by agar diffusion method. The mechanism of action of the EO was determined on the susceptible strains by both of time kill assay and lysis experience. The minimal inhibitory concentrations were determined by agar macro-dilution and micro-dilution methods. Anti-oxidative properties of the EO were also studied by free diphenyl-2-picrylhydrazyl radical scavenging and reducing power techniques. Results: The EO yielded 0.68 (v/w). The chemical analysis presented two dominant constituents which were the elemicin (35.3%) and the geranyl acetate (26.8%). D. gracilis EO inhibited the growth of Bacillus cereus and Proteus mirabilis significantly with minimal inhibitory concentrations of 17.15 mg/mL by the agar dilution method and 57.05 mg/mL and 114.1 mg/mL, respectively by liquid micro-dilution. A remarkable decrease in a survival rate as well as in the absorbance in 260 nm was recorded, which suggested that the cytoplasm membrane was one of the targets of the EO. The EO showed, also, important anti-oxidative effects with an IC50 of 0.002 mg/mL and a dose-dependent reducing power. Conclusions: D. gracilis EO showed potent antimicrobial and anti-oxidative activities and had acted on the cytoplasm membrane. These activities could be exploited in the food industry for food preservation.

  16. Characterization of volatile compounds of Daucus crinitus Desf. Headspace Solid Phase Microextraction as alternative technique to Hydrodistillation

    Directory of Open Access Journals (Sweden)

    Tabti Boufeldja

    2010-09-01

    Full Text Available Abstract Background Traditionally, the essential oil of aromatic herbs is obtained using hydrodistillation (HD. Because the emitted volatile fraction plays a fundamental role in a plant's life, various novel techniques have been developed for its extraction from plants. Among these, headspace solid phase microextraction (HS-SPME can be used to obtain a rapid fingerprint of a plant's headspace. Daucus crinitus Desf. is a wild plant that grows along the west coast of Algeria. Only a single study has dealt with the chemical composition of the aerial part oils of Algerian D. crinitus, in which isochavicol isobutyrate (39.0%, octyl acetate (12.3%, and β-caryophyllene (5.4% were identified. Using GC-RI and GC-MS analysis, the essential oils and the volatiles extracted from separated organs of D. crinitus Desf. were studied using HS-SPME. Results GC-RI and GC-MS analysis identified 72 and 79 components in oils extracted using HD and in the volatile fractions extracted using SPME, respectively. Two types of essential oils were produced by the plant: the root oils had aliphatic compounds as the main component (87.0%-90.1%, and the aerial part oils had phenylpropanoids as the main component (43.1%-88.6%. HS-SPME analysis showed a more precise distribution of compounds in the organs studied: oxygenated aliphatic compounds were well represented in the roots (44.3%-84.0%, hydrocarbon aliphatic compounds were in the leaves and stems (22.2%-87.9%, and phenylpropanoids were in the flowers and umbels (47.9%-64.2%. Moreover, HS-SPME allowed the occurrence of isochavicol (29.6 - 34.7% as main component in D. crinitus leaves, but it was not detected in the oils, probably because of its solubility in water. Conclusions This study demonstrates that HD and HS-SPME modes could be complimentary extraction techniques in order to obtain the complete characterization of plant volatiles.

  17. Chemical analysis,antimicrobial and anti-oxidative properties of Daucus gracilis essential oil and its mechanism of action

    Institute of Scientific and Technical Information of China (English)

    Meriem El Kolli; Hocine Laouer; Hayet El Kolli; Salah Akkal; Farida Sahli

    2016-01-01

    Objective:To evaluate the essential oils(EO) composition,antimicrobial and antioxidant power of a local plant,Daucus gracilis(D.gracilis).Methods:The aerial parts of D.gracilis were subjected to hydro distillation by a Clevenger apparatus type to obtain the EO which had been analyzed by gas chromatography and gas chromatography coupled with mass spectrometry,and screened for antimicrobial activity against five bacteria and three fungi by agar diffusion method.The mechanism of action of the EO was determined on the susceptible strains by both of time kill assay and lysis experience.The minimal inhibitory concentrations were determined by agar macrodilution and micro-dilution methods.Anti-oxidative properties of the EO were also studied by free diphenyl-2-picrylhydrazyl radical scavenging and reducing power techniques.Results:The EO yielded 0.68(v/w).The chemical analysis presented two dominant constituents which were the elemicin(35.3%) and the geranyl acetate(26.8%).D.gracilis EO inhibited the growth of Bacillus cereus and Proteus mirabilis significantly with minimal inhibitory concentrations of 17.15 μg/mL by the agar dilution method and57.05 μg/mL and 114.1 μg/mL,respectively by liquid micro-dilution.A remarkable decrease in a survival rate as well as in the absorbance in 260 nm was recorded,which suggested that the cytoplasm membrane was one of the targets of the EO.The EO showed,also,important anti-oxidative effects with an IC50 of 0.002 mg/mL and a dosedependent reducing power.Conclusions:D.gracilis EO showed potent antimicrobial and anti-oxidative activities and had acted on the cytoplasm membrane.These activities could be exploited in the food industry for food preservation.

  18. Requerimientos hídricos de la zanahoria (D. carota L. durante tres etapas de su desarrollo

    Directory of Open Access Journals (Sweden)

    Fabio Emilio Forero-Ulloa

    2015-07-01

    Full Text Available La zanahoria (D. carota L. es uno de los principales productos del departamento de Boyacá, participa con 1093 ha, especialmente en los municipios de Ventaquemada, Samacá y Tunja. Los híbridos Chantenay tienen en Ventaquemada un rendimiento promedio de 20 t.ha-1, que es bajo comparado con el de la Sabana de Bogotá, de 28.1t.ha-1; las limitantes en la producción de la zona son: falta de riego, semillas de altas exigencias agronómicas (adecuada mecanización del suelo, fertilización apropiada… y presencia de patógenos y arvenses. Con el objetivo de buscar los requerimientos hídricos del cultivo de zanahoria en tres fases fenológicas (crecimiento, elongación y madurez del órgano cosechable, el estudio se desarrolló en el segundo semestre de 2014, en Ventaquemada, vereda Bojirque; la evaluación de las fases se realizó bajo un diseño de muestreo estratificado con muestreos destructivos efectuados cada 30 días a partir de la siembra. El valor del coeficiente de cultivo (Kc se determinó a través de la metodología propuesta por la FAO. Se instalaron dos lisímetros de 1 m3 de capacidad, con el fin de establecer el consumo hídrico del cultivo. La evapotranspiración del cultivo de referencia (ETo fue obtenida con los datos climáticos tomados por la estación meteorológica inalámbrica Ambient Tiempo WS-2080 instalada en el sitio, los cuales se analizaron a través de la ecuación de Penman-Monteith, con el apoyo del software Cropwat. El Kc para cada etapa fenológica fue: fase crecimiento, 0.14; fase elongación, 0.29, y fase madurez órgano cosechable, 0.55.

  19. Lactic acid production by mixed cultures of Kluyveromyces marxianus, Lactobacillus delbrueckii ssp. bulgaricus and Lactobacillus helveticus.

    Science.gov (United States)

    Plessas, S; Bosnea, L; Psarianos, C; Koutinas, A A; Marchant, R; Banat, I M

    2008-09-01

    Lactic acid production using Kluyveromyces marxianus (IFO 288), Lactobacillus delbrueckii ssp. bulgaricus (ATCC 11842) and Lactobacillus helveticus (ATCC 15009) individually or as mixed culture on cheese whey in stirred or static fermentation conditions was evaluated. Lactic acid production, residual sugar and cell biomass were the main features examined. Increased lactic acid production was observed, when mixed cultures were used in comparison to individual ones. The highest lactic acid concentrations were achieved when K. marxianus yeast was combined with L. delbrueckii ssp. bulgaricus, and when all the strains were used revealing possible synergistic effects between the yeast and the two lactic acid bacteria. The same synergistic effects were further observed and verified when the mixed cultures were applied in sourdough fermentations, proving that the above microbiological system could be applied in the food fermentations where high lactic acid production is sought.

  20. SSP Technology Investigation of a High-Voltage DC-DC Converter

    Science.gov (United States)

    Pappas, J. A.; Grady, W. M.; George, Patrick J. (Technical Monitor)

    2002-01-01

    The goal of this project was to establish the feasibility of a high-voltage DC-DC converter based on a rod-array triggered vacuum switch (RATVS) for the Space Solar Power system. The RATVS has many advantages over silicon and silicon-carbide devices. The RATVS is attractive for this application because it is a high-voltage device that has already been demonstrated at currents in excess of the requirement for an SSP device and at much higher per-device voltages than existing or near-term solid state switching devices. The RATVS packs a much higher specific power rating than any solid-state device and it is likely to be more tolerant of its surroundings in space. In addition, pursuit of an RATVS-based system would provide NASA with a nearer-term and less expensive power converter option for the SSP.

  1. Purification and partial characterization of bacteriocin produced by Lactococcus lactis ssp. lactis LL171.

    Science.gov (United States)

    Kumari, Archana; Akkoç, Nefise; Akçelik, Mustafa

    2012-04-01

    Lactic acid bacteria (LAB) are possessing ability to synthesize antimicrobial compounds (like bacteriocin) during their growth. In this regard, novel bacteriocin compound secreting capability of LAB isolated from Tulum Cheese in Turkey was demonstrated. The synthesized bacteriocin was purified by ammonium sulphate precipitation, dialysis and gel filtration. The molecular weight (≈3.4 kDa) of obtained bacteriocin was confirmed by SDS-PAGE, which revealed single peptide band. Molecular identification of LAB strain isolated from Tulum Cheese was conducted using 16S rDNA gene sequencing as Lactococcus lactis ssp. lactis LL171. The amino acid sequences (KKIDTRTGKTMEKTEKKIELSLKNMKTAT) of the bacteriocin from Lactococcus lactis ssp. lactis LL171 was found unique and novel than reported bacteriocins. Further, the bacteriocin was possessed the thermostable property and active at wide range of pH values from 1 to 11. Thus, bacteriocin reported in this study has the potential applications property as food preservative agent.

  2. Enduring toxicity of transgenic Anabaena PCC 7120 expressing mosquito larvicidal genes from Bacillus thuringiensis ssp. israelensis.

    Science.gov (United States)

    Manasherob, Robert; Otieno-Ayayo, Zachariah Ngalo; Ben-Dov, Eitan; Miaskovsky, Rina; Boussiba, Sammy; Zaritsky, Arieh

    2003-10-01

    Persistence of biological control agents against mosquito larvae was tested under simulated field conditions. Mosquito larvicidal activity of transgenic Anabaena PCC 7120 expressing cry4Aa, cry11Aa and p20 from Bacillus thuringiensis ssp. israelensis was greater than B. thuringiensis ssp. israelensis primary powder (fun 89C06D) or wettable powder (WP) (Bactimos products) when either mixed with silt or exposed to sunlight outdoors. Reduction of Bactimos primary powder toxicity was at least 10-fold higher than Anabaena's after mixing with silt. In outdoors experiments, Bactimos WP remained toxic (over 30% mortality of 3rd instar Aedes aegypti larvae) for 2-4 days only, while transgenic Anabaena's toxicity endured 8-21 days.

  3. ARE ENTEROCOCCUS FAECIUM CRL 183 AND LACTOBACILLUS HELVETICUS SSP. JUGURTI 416 ABLE TO PRODUCE ANTIMICROBIAL SUBSTANCE?

    Directory of Open Access Journals (Sweden)

    R. BEDANI

    2008-12-01

    Full Text Available

    Production of antimicrobial substance by E. faecium CRL 183 and L. helveticus ssp jugurti 416 was tested against pathogenic bacteria and microorganisms isolated from Wistar rat faeces, using a spot-on-the-lawn assay. Three pathogenic bacteria (Listeria monocytogenes 1/2a, Salmonella enteridites 193/95, Escherichia coli O157:H7 and twenty-fi ve colonies, isolated from animal faeces, belonging to the following groups Enterococcus, Lactobacillus, Clostridium, Bacteroides and Enterobacteriaceae, were used as indicator microorganisms. The results showed that E. faecium CRL 183 and L. helveticus ssp jugurti 416 did not produce signifi cant antimicrobial activity against the indicator microorganisms tested. More tests needed to be carried out with other indicator bacteria and other culture media to confi rm the lack of antimicrobial production.

  4. Chemical Composition and Antimicrobial Activity of Thymus praecox Opiz ssp. polytrichus Essential Oil from Serbia

    Directory of Open Access Journals (Sweden)

    Nada V. Petrović

    2016-03-01

    Full Text Available Chemical composition and antimicrobial activity of the essential oil of wild growing Thymus praecox Opiz ssp. polytrichus were studied. trans-Nerolidol (19.79%, germacrene D (18.48% and thymol (9.62% were the main components in essential oil. This study is the first report of the antimicrobial activity of essential oil obtained from the T. praecox Opiz ssp. polytrichus. Antimicrobial activity of essential oil was investigated on Bacillus cereus, Micrococcus flavus, Staphylococcus aureus, Listeria monocytogenes, Escherichia coli, Pseudomonas aeruginosa, Enterobacter cloacae, Salmonella typhimurium, Aspergillus fumigatus, A. versicolor, A. ochraceus, A. niger, Trichoderma viride, Penicillium funiculosum, P. ochrochloron, and P. verrucosum var. cyclopium strains. In the antimicrobial assays, essential oil showed high antimicrobial potential (MIC 19–150 m g/mL, MBC 39–300 m g/mL for bacteria; and MIC 19.5–39 m g/mL, MFC 39–78 m g/mL for fungi.

  5. Chemical Composition of Different Botanical Origin Honeys Produced by Sicilian Black Honeybees (Apis mellifera ssp. sicula).

    Science.gov (United States)

    Mannina, Luisa; Sobolev, Anatoly P; Di Lorenzo, Arianna; Vista, Silvia; Tenore, Gian Carlo; Daglia, Maria

    2015-07-01

    In 2008 a Slow Food Presidium was launched in Sicily (Italy) for an early warning of the risk of extinction of the Sicilian native breed of black honeybee (Apis mellifera L. ssp sicula). Today, the honey produced by these honeybees is the only Sicilian honey produced entirely by the black honeybees. In view of few available data regarding the chemical composition of A. mellifera ssp. sicula honeys, in the present investigation the chemical compositions of sulla honey (Hedysarum coronarium L.) and dill honey (Anethum graveolens L.) were studied with a multimethodological approach, which consists of HPLC-PDA-ESI-MSn and NMR spectroscopy. Moreover, three unifloral honeys (lemon honey (obtained from Citrus limon (L.) Osbeck), orange honey (Citrus arantium L.), and medlar honey (Eriobotrya japonica (Thunb.) Lindl)), with known phenol and polyphenol compositions, were studied with NMR spectroscopy to deepen the knowledge about sugar and amino acid compositions.

  6. Consumption of Dairy Yogurt Containing Lactobacillus paracasei ssp. paracasei, Bifidobacterium animalis ssp. lactis and Heat-Treated Lactobacillus plantarum Improves Immune Function Including Natural Killer Cell Activity

    Directory of Open Access Journals (Sweden)

    Ayoung Lee

    2017-05-01

    Full Text Available The aim of this study was to investigate the impact of consuming dairy yogurt containing Lactobacillus paracasei ssp. paracasei (L. paracasei, Bifidobacterium animalis ssp. lactis (B. lactis and heat-treated Lactobacillus plantarum (L. plantarum on immune function. A randomized, open-label, placebo-controlled study was conducted on 200 nondiabetic subjects. Over a twelve-week period, the test group consumed dairy yogurt containing probiotics each day, whereas the placebo group consumed milk. Natural killer (NK cell activity, interleukin (IL-12 and immunoglobulin (Ig G1 levels were significantly increased in the test group at twelve weeks compared to baseline. Additionally, the test group had significantly greater increases in serum NK cell activity and interferon (IFN-γ and IgG1 than placebo group. Daily consumption of dairy yogurt containing L. paracasei, B. lactis and heat-treated L. plantarum could be an effective option to improve immune function by enhancing NK cell function and IFN-γ concentration (ClinicalTrials.gov: NCT03051425.

  7. Failure of PCR to Detect Treponema pallidum ssp. pertenue DNA in Blood in Latent Yaws.

    Science.gov (United States)

    Marks, Michael; Katz, Samantha; Chi, Kai-Hua; Vahi, Ventis; Sun, Yongcheng; Mabey, David C; Solomon, Anthony W; Chen, Cheng Y; Pillay, Allan

    2015-01-01

    Yaws, caused by Treponema pallidum ssp. pertenue, is a neglected tropical disease closely related to venereal syphilis and is targeted for eradication by 2020. Latent yaws represents a diagnostic challenge, and current tools cannot adequately distinguish between individuals with true latent infection and individuals who are serofast following successful treatment. PCR on blood has previously been shown to detect T. pallidum DNA in patients with syphilis, suggesting that this approach may be of value in yaws. We performed real-time PCR for Treponema pallidum ssp. pertenue on blood samples from 140 children with positive T. pallidum Particle Agglutination (TPPA) and Rapid Plasma Reagin (RPR) tests and 7 controls (negative serology), all collected as part of a prospective study of yaws in the Solomon Islands. All samples were also tested by a nested PCR for T. pallidum. 12 patients had clinical evidence of active yaws whilst 128 were considered to have latent yaws. 43 children had high titre rapid plasma reagins (RPRs) of ≥1:32. PCR testing with both assays gave negative results in all cases. It is possible that the failure to detect T. pallidum ssp. pertenue in blood reflects lower loads of organism in latent yaws compared to those in latent infection with T. pallidum ssp. pertenue, and/or a lower propensity for haematogenous dissemination in yaws than in syphilis. As the goal of the yaws control programme is eradication, a tool that can differentiate true latent infection from individuals who are serofast would be of value; however, PCR of blood is not that tool.

  8. Stem rust (Puccinia graminis ssp. graminicola Urban its hosts and harmfulness in grasses grown for seed

    Directory of Open Access Journals (Sweden)

    Maria Prończuk

    2013-12-01

    Full Text Available Stem rust development on four species of grasses was studied in field experiments conducted at Radzików in 1997-2001. Population of Puccinia graminis ssp. graminicola from different hosts was characterised and their harmfulness for grass grown for seed was estimated. The materials for study were ecotypes and strains of Lolium perenne, Festuca rubra, Poa pratensis and Deschampsia caespitosa collected in breeding nursery and cultivars and strains of L.perenne, F.rubra, P.pratensis cultivated for seed. It was found that the changes in environmental conditions during last years influenced earlier occurrence of stem rust on grasses in Poland. All examined species were the host of P.graminis ssp. graminicola, however the period of infection of particular hosts were different. L.perenne and D.caespitosa were infected in early summer but F.rubra and P.pratensis in late summer or in the autumn. Morphological analysis of spores of P.graminis ssp. graminicola have shoved significant differences between populations obtained from L.perenne and D.caespitosa. Some differences were found between populations from F.rubra and P.pratensis also, but they need more study. Every year occurrence of stem rust on L.perenne and D.caespitosa and its relation with spring temperature in Radzików indicated that populations of patogen could overwinter in local turf. Incidental appearance of stem rust on F.rubra and P.pratensis in centre of Poland allowed to suppose that spores of these forms might be transfer by wind from other regions. The investigation revealed that stem rust can be dangerous for L.perenne grown for seed when infection occurs at flowering time. It has been established that infection of F.rubra and P.pratensis in autumn should not be disregarded. Damages of leaves by P.graminis ssp. graminicola substantially limited plant heading in the next year.

  9. Evaluating the Strange Situation Procedure (SSP to assess the bond between dogs and humans.

    Directory of Open Access Journals (Sweden)

    Therese Rehn

    Full Text Available The Strange Situation Procedure (SSP is increasingly being used to study attachment between dogs and humans. It has been developed from the Ainsworth Strange Situation Procedure, which is used extensively to investigate attachment between children and their parents. In this experiment, 12 female beagle dogs were tested in two treatments to identify possible order effects in the test, a potential weakness in the SSP. In one treatment (FS, dogs participated together with a 'familiar person' and a 'stranger'. In a control treatment (SS, the same dogs participated together with two unfamiliar people, 'stranger A' and 'stranger B'. Comparisons were made between episodes within as well as between treatments. As predicted in FS, dogs explored more in the presence of the familiar person than the stranger. Importantly, they also explored more in the presence of stranger A (who appeared in the same order as the familiar person and followed the same procedure than stranger B in SS. Furthermore, comparisons between treatments, where a familiar person was present in FS and stranger A was present in SS, showed no differences in exploration. In combination, these results indicate that the effect of a familiar person on dogs' exploratory behaviour, a key feature when assessing secure attachment styles, could not be tested reliably due to the order in which the familiar person and the stranger appear. It is proposed that in the future only counterbalanced versions of the SSP are used. Alternatively, since dogs reliably initiated more contact with the familiar person compared to the strangers, it is suggested that future studies on attachment in dogs towards humans should focus either on the behaviour of the dog in those episodes of the SSP when the person returns, or on reunion behaviour in other studies, specially designed to address dog-human interactions at this time.

  10. Failure of PCR to Detect Treponema pallidum ssp. pertenue DNA in Blood in Latent Yaws.

    Directory of Open Access Journals (Sweden)

    Michael Marks

    Full Text Available Yaws, caused by Treponema pallidum ssp. pertenue, is a neglected tropical disease closely related to venereal syphilis and is targeted for eradication by 2020. Latent yaws represents a diagnostic challenge, and current tools cannot adequately distinguish between individuals with true latent infection and individuals who are serofast following successful treatment. PCR on blood has previously been shown to detect T. pallidum DNA in patients with syphilis, suggesting that this approach may be of value in yaws. We performed real-time PCR for Treponema pallidum ssp. pertenue on blood samples from 140 children with positive T. pallidum Particle Agglutination (TPPA and Rapid Plasma Reagin (RPR tests and 7 controls (negative serology, all collected as part of a prospective study of yaws in the Solomon Islands. All samples were also tested by a nested PCR for T. pallidum. 12 patients had clinical evidence of active yaws whilst 128 were considered to have latent yaws. 43 children had high titre rapid plasma reagins (RPRs of ≥1:32. PCR testing with both assays gave negative results in all cases. It is possible that the failure to detect T. pallidum ssp. pertenue in blood reflects lower loads of organism in latent yaws compared to those in latent infection with T. pallidum ssp. pertenue, and/or a lower propensity for haematogenous dissemination in yaws than in syphilis. As the goal of the yaws control programme is eradication, a tool that can differentiate true latent infection from individuals who are serofast would be of value; however, PCR of blood is not that tool.

  11. CD4 T Cell Dependent Colitis Exacerbation Following Re-Exposure of Mycobacterium avium ssp. paratuberculosis

    Science.gov (United States)

    Suwandi, Abdulhadi; Bargen, Imke; Pils, Marina C.; Krey, Martina; Zur Lage, Susanne; Singh, Anurag K.; Basler, Tina; Falk, Christine S.; Seidler, Ursula; Hornef, Mathias W.; Goethe, Ralph; Weiss, Siegfried

    2017-01-01

    Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of Johne's disease (JD), a chronic inflammatory bowel disease of cattle characterized by intermittent to chronic diarrhea. In addition, MAP has been isolated from Crohn's disease (CD) patients. The impact of MAP on severity of clinical symptoms in JD as well as its role in CD are yet unknown. We have previously shown that MAP is able to colonize inflamed enteric tissue and to exacerbate the inflammatory tissue response (Suwandi et al., 2014). In the present study, we analyzed how repeated MAP administration influences the course of dextran sulfate sodium (DSS)-induced colitis. In comparison to mice exposed to DSS or MAP only, repeated exposure of DSS-treated mice to MAP (DSS/MAP) revealed a significantly enhanced clinical score, reduction of colon length as well as severe CD4+ T cell infiltration into the colonic lamina propria. Functional analysis identified a critical role of CD4+ T cells in the MAP-induced disease exacerbation. Additionally, altered immune responses were observed when closely related mycobacteria species such as M. avium ssp. avium and M. avium ssp. hominissuis were administered. These data reveal the specific ability of MAP to aggravate intestinal inflammation and clinical symptoms. Overall, this phenotype is compatible with similar disease promoting capabilites of MAP in JD and CD.

  12. CD4 T Cell Dependent Colitis Exacerbation Following Re-Exposure of Mycobacterium avium ssp. paratuberculosis.

    Science.gov (United States)

    Suwandi, Abdulhadi; Bargen, Imke; Pils, Marina C; Krey, Martina; Zur Lage, Susanne; Singh, Anurag K; Basler, Tina; Falk, Christine S; Seidler, Ursula; Hornef, Mathias W; Goethe, Ralph; Weiss, Siegfried

    2017-01-01

    Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of Johne's disease (JD), a chronic inflammatory bowel disease of cattle characterized by intermittent to chronic diarrhea. In addition, MAP has been isolated from Crohn's disease (CD) patients. The impact of MAP on severity of clinical symptoms in JD as well as its role in CD are yet unknown. We have previously shown that MAP is able to colonize inflamed enteric tissue and to exacerbate the inflammatory tissue response (Suwandi et al., 2014). In the present study, we analyzed how repeated MAP administration influences the course of dextran sulfate sodium (DSS)-induced colitis. In comparison to mice exposed to DSS or MAP only, repeated exposure of DSS-treated mice to MAP (DSS/MAP) revealed a significantly enhanced clinical score, reduction of colon length as well as severe CD4(+) T cell infiltration into the colonic lamina propria. Functional analysis identified a critical role of CD4(+) T cells in the MAP-induced disease exacerbation. Additionally, altered immune responses were observed when closely related mycobacteria species such as M. avium ssp. avium and M. avium ssp. hominissuis were administered. These data reveal the specific ability of MAP to aggravate intestinal inflammation and clinical symptoms. Overall, this phenotype is compatible with similar disease promoting capabilites of MAP in JD and CD.

  13. Cytogenetic diversity of simple sequences repeats in morphotypes of Brassica rapa ssp. chinensis

    Directory of Open Access Journals (Sweden)

    Jinshuang Zheng

    2016-07-01

    Full Text Available A significant fraction of the nuclear DNA of all eukaryotes is occupied by simple sequence repeats (SSRs. Although thesis sequences have sparked great interest as a means of studying genetic variation, linkage mapping and evolution, little attention had been paid to the chromosomal distribution and cytogenetic diversity of these sequences. This paper report the long-range organization of all possible classes of mono-, di- and tri-nucleotide SSRs in Brassica rapa. Fluorescence in situ hybridization (FISH was used to characterize the cytogenetic diversity of SSRs among morphotypes of B. rapa ssp. chinensis. The proportion of different SSR motifs varied among morphtypes of B. rapa, with trinucleotide SSRs more prevalent in the genome of B. rapa ssp. chinensis. The chromosomal characterizations of mono-, di- and tri-nucleotide repeats have been acquired. The data has revealed the non-random and motif-dependent chromosome distribution of SSRs in different morphtypes, and allowed the relative variability characterized by SSRs amount and similar chromosomal distribution in centromeric/peri-centromeric heterochromatin. The differences of SSRs in the abundance and distribution indicated the driving force of SSRs in relationship with the evolution of B. rapa species. The results provided a comprehensive view on the SSR sequence distribution and evolution for comparison among morphtypes B. rapa ssp. chinensis.

  14. Simultaneous genotyping of HPA-17w to -21w by PCR-SSP in Chinese Cantonese.

    Science.gov (United States)

    Zhou, Haojie; Ding, Haoqiang; Chen, Yangkai; Li, Xiaofan; Ye, Xin; Nie, Yongmei

    2015-01-01

    Studies have reported the polymorphism of human platelet antigen (HPA)-17w, -18w, -19w, -20w, and -21w. However, the distribution of these five antigens in Chinese Cantonese is still unknown. In this study, we designed new sequence-specific primers for HPA-19w to -21w and used published primers for HPA-17w and -18w to develop a polymerase chain reaction with the sequence-specific primers (PCR-SSP) method for simultaneously genotyping HPA-17w to -21w. A total of 820 unrelated Cantonese apheresis platelet donors in Guangzhou were involved in this study. Among the five HPAs, complete a/a homozygosity was observed for HPA-17w to -20w with an allele frequency of 1.0000. For HPA-21w, nine individuals (9/820, 1.10%) were found to be HPA-21a/bw heterozygous and the allele frequencies of HPA-21a and HPA-21bw were 0.9945 (1631/1640) and 0.0055 (9/1640), respectively. The reliability of the PCR-SSP method was determined by comparing with the genotyping results by DNA sequencing, and no inconsistencies were observed between the two methods. This study provides a reliable PCR-SSP method for simultaneously genotyping HPA-17w to -21w and could improve HPA-matched platelet transfusion in Chinese Cantonese.

  15. RNA-seq Analysis of Cold and Drought Responsive Transcriptomes of Zea mays ssp. mexicana L.

    Science.gov (United States)

    Lu, Xiang; Zhou, Xuan; Cao, Yu; Zhou, Meixue; McNeil, David; Liang, Shan; Yang, Chengwei

    2017-01-01

    The annual Zea mays ssp. mexicana L. is a member of teosinte, a wild relative of the Zea mays spp. mays L. This subspecies has strong growth and regeneration ability, high tiller numbers, high protein and lysine content as well as resistance to many fungal diseases, and it can be effectively used in maize improvement. In this study, we reported a Zea mays ssp. mexicana L. transcriptome by merging data from untreated control (CK), cold (4°C) and drought (PEG2000, 20%) treated plant samples. A total of 251,145 transcripts (N50 = 1,269 bp) and 184,280 unigenes (N50 = 923 bp) were predicted, which code for homologs of near 47% of the published maize proteome. Under cold conditions, 2,232 and 817 genes were up-regulated and down-regulated, respectively, while fewer genes were up-regulated (532) and down-regulated (82) under drought stress, indicating that Zea mays ssp. mexicana L. is more sensitive to the applied cold rather than to the applied drought stresses. Functional enrichment analyses identified many common or specific biological processes and gene sets in response to drought and cold stresses. The ABA dependent pathway, trehalose synthetic pathway and the ICE1-CBF pathway were up-regulated by both stresses. GA associated genes have been shown to differentially regulate the responses to cold in close subspecies in Zea mays. These findings and the identified functional genes can provide useful clues for improving abiotic stress tolerance of maize.

  16. Evaluation of desiccated and deformed diaspores from natural building materials

    Directory of Open Access Journals (Sweden)

    Tamás Henn

    2015-03-01

    Full Text Available With the increasing sophistication of paleoethnobotanical methods, it is now possible to reconstruct new aspects of the day-to-day life of past peoples, and, ultimately, gain information about their cultivated plants, land-use practices, architecture, diet, and trade. Reliable identification of plant remains, however, remains essential to the study of paleoethnobotany, and there is still much to learn about precise identification. This paper describes and evaluates the most frequent types of deformed desiccated diaspores revealed from adobe bricks used in buildings in Southwestern Hungary that were built primarily between 1850 and 1950. A total of 24,634 diaspores were recovered from 333.05 kg adobe samples. These seeds and fruits belong to 303 taxa, and the majority were arable and ruderal weed species. A total of 98.97% of the diaspores were identified to species. In other cases, identification was possible only to genus or family (0.93% and 0.10% of diaspores, respectively. Difficulties in identification were caused mainly by morphological changes in the size, shape, color, and surface features of diaspores. Most diaspores were darker in color and significantly smaller than fresh or recently desiccated seeds and fruits. Surface features were often absent or fragmented. The most problematic seeds to identify were those of Centaurea cyanus, Consolida regalis, Scleranthus annuus and Daucus carota ssp. carota, which are discussed in detail. Our research aids archaeobotanists in the identification of desiccated and deformed diaspores.

  17. In situ simultaneous analysis of polyacetylenes, carotenoids and polysaccharides in carrot roots.

    Science.gov (United States)

    Baranska, Malgorzata; Schulz, Hartwig; Baranski, Rafal; Nothnagel, Thomas; Christensen, Lars P

    2005-08-24

    This paper presents an approach to simultaneously analyze polyacetylenes, carotenoids, and polysaccharides in carrot (Daucus carota L.) roots by means of Raman spectroscopy. The components were measured in situ in the plant tissue without any preliminary sample preparation. The analysis is based on the intensive and characteristic key bands observed in the Raman spectrum of carrot root. The molecular structures of the main carrot polyacetylenes, falcarinol and falcarindiol, are similar, but their Raman spectra exhibit specific differences demonstrated by the shift of their -C[triple bond]C- mode from 2258 to 2252 cm(-)(1), respectively. Carotenoids can be identified by -C=C- stretching vibrations (about 1520 and 1155 cm(-)(1)) of the conjugated system of their polyene chain, whereas the characteristic Raman band at 478 cm(-)(1) indicates the skeletal vibration mode of starch molecule. The other polysaccharide, pectin, can be identified by the characteristic band at 854 cm(-)(1), which is due to the -C-O-C- skeletal mode of alpha-anomer carbohydrates. The Raman mapping technique applied here has revealed detailed information regarding the relative distribution of polyacetylenes, carotenoids, starch, and pectin in the investigated plant tissues. The distribution of these components varies among various carrot cultivars, and especially a significant difference can be seen between cultivated carrot and the wild relative D. carota ssp. maritimus.

  18. SLA typing using the PCR-SSP method and establishment of the SLA homozygote line in pedigreed SNU miniature pigs.

    Science.gov (United States)

    Yeom, Su-Cheong; Park, Chung-Gyu; Lee, Byeong-Chun; Lee, Wang-Jae

    2010-04-01

    Seoul National University (SNU) miniature pigs represent a closed colony with 24 founder pigs and a well preserved pedigree. Characterization using mRNA sequence analysis was conducted for 6 swine leukocyte antigen (SLA) loci in parental or founder pigs, and 17 defined alleles were detected. Based on these complete coding sequences, 17 sequence specific primers (SSPs) were designed for polymorphic sites. To validate the specificity of each allele SSP, the PCR-SSP was conducted with defined allele clones as templates. PCR-SSP was conducted with the hot start polymerase and touch-down PCR. The parental or found SNU miniature pigs showed overall SLA class I and II heterozygotes. Using the established PCR-SSP method, we conducted SLA typing for breeding stock including 2 pedigreed pigs and identified the novel SLA class II homozygote haplotye (DRA*0201, DRB1*0403, DQA*0102 and DQB1*0701) and 2 SLA homozygote pig lines: SLA class I Hp-3.0 and class II Hp-0.3, and SLA class I Hp-2.0 and class II Hp-0.2. We thought that our PCR-SSP SLA typing method could be applicable for new SLA homozygote line establishment by assignment and scheduled breeding.

  19. PENGEMBANGAN SUBJECT SPECIFIC PEDAGOGY (SSP IPA TERPADU UNTUK MENINGKATKAN HASIL BELAJAR SISWA

    Directory of Open Access Journals (Sweden)

    Fitri Yuliawati

    2016-05-01

    Full Text Available Background of this research is the analysis of the results of interviews some junior secondary schools in Yogyakarta and the conclusion that teachers do not use an integrated science teaching and teachers still find difficulties in the application of learning science in an integrated manner. It can be influenced by several factors, such as the lack of reference used by teachers in presenting the material Integrated Science relevantly, most of science teachers are from educational background of chemistry, physics, and biology instead of science education, so that teachers find difficulties to create an integrated learning of science. In addition, teachers feel difficulty in determining the depth of the material, limits of integration in integrated science teaching, and did not know the concept of integrated science teaching. This research is a development research. Learning tools developed included : student books, lesson plans, student activity sheets and evaluation tools. The development of the learning which is done in this study use the models of 4D development which includes the step of Define (definition which at this stage conducted a needs analysis. Design : it is the stage of Subject Specific Pedagogy (SSP software design. Development, it is the stage of development after the draft was made followed by a learning device validation by experts. This stage is also conducted to seek input from all the responses, reactions and comments from teachers, students, and observers so that it can be used for further improvement of science teaching later. The Disseminate, it is the stage of field tests are widely but not done. Data collection instruments used in this study include : test items and questionnaire. The conclusion of this development research are as follows : the results of the validation SSP integrated science by learning tools expert, material experts and media experts indicate the category of Very Good (SB so that SSP integrated

  20. [Alkaloids and flavonoid from aerial parts of Hammada articulata ssp. scoparia].

    Science.gov (United States)

    Benkrief, R; Brum-Bousquet, M; Tillequin, F; Koch, M

    1990-01-01

    Two alkaloids (N-methylisosalsoline and carnegine) had been previously described from the aerial parts of Hammada articulata ssp. scoparia. A thorough study of this plant material has now led to the isolation of eight minor alkaloids and one flavonoid. The alkaloids include four isoquinolines (isosalsoline, salsolidine, dehydrosalsolidine and isosalsolidine), one isoquinolone (N-methylcorydaldine), tryptamine, N-omega-methyltryptamine and one beta-carboline (tetrahydroharman). The flavonoid has been identified as isorhamnetin-3-O-beta-D-robinobioside. The structures have been elucidated on the basis of spectral data, mainly mass spectrometry (D-IC) and 1H NMR.

  1. Accumulation of biologically active furanocoumarins in Ruta graveolens ssp. divaricata (Tenore) Gams in vitro culture.

    Science.gov (United States)

    Ekiert, H; Abou-Mandour, A A; Czygan, F Ch

    2005-01-01

    The study was designed to investigate dynamics of accumulation of five linear furanocoumarins and umbelliferone in stationary liquid cultures of Ruta graveolens ssp. divaricata (Tenore) Gams during 6-week growth cycles. The contents of individual metabolites in biomass increased 1.8-3.5 times while their total content rose 2.3 times. Maximum contents of xanthotoxin, bergapten and isopimpinellin (112.3, 76.2 and 84.0mg/100g d.w., respectively) and maximum total content of all metabolites (283.4 mg/100 g d.w.), obtained on 35th culture day, are interesting from practical point of view.

  2. Antifungal activity of Lactobacillus paracasei ssp. tolerans isolated from a sourdough bread culture.

    Science.gov (United States)

    Hassan, Yousef I; Bullerman, Lloyd B

    2008-01-15

    Lactic acid bacteria were isolated from four different sourdough bread cultures previously investigated for antifungal activity. A total of 116 isolates were obtained and screened for antifungal activity against a battery of molds. The most inhibitory isolate obtained was identified by API 50 CHL and 16s ribosomal RNA genotyping and found to be Lactobacillus paracasei ssp. tolerans. This isolate completely inhibited the growth of Fusarium proliferatum M 5689, M 5991 and Fusarium graminearum R 4053 compared to controls in a dual agar plate assay.

  3. Chemical composition and possible in vitro phytotoxic activity of Helichrsyum italicum (Roth) Don ssp. italicum.

    Science.gov (United States)

    Mancini, Emilia; De Martino, Laura; Marandino, Aurelio; Scognamiglio, Maria Rosa; De Feo, Vincenzo

    2011-09-08

    The chemical composition of the essential oil of Helichrysum italicum (Roth) Don ssp. italicum, collected in the National Park of Cilento and Diano Valley, Southern Italy, was studied by means of GC and GC/MS. Forty four compounds of 45 constituents were identified in the oil, mainly oxygenated sesquiterpenes. The essential oil was evaluated for its potential in vitro phytotoxic activity against germination and early radicle elongation of radish and garden cress. The radicle elongation of radish was significantly inhibited at the highest doses tested, while germination of both seeds was not affected.

  4. EVALUACIÓN DE UNA COLECCIÓN DEL GÉNERO Triticum: TRIGO HARINERO (Triticum aestivum ssp aestivum), TRIGO DURO (Triticum turgidum ssp. durum) Y TRITICALE (X Triticum secale Wittmack) EN LAS CONDICIONES DEL OCCIDENTE DE CUBA

    OpenAIRE

    2006-01-01

    En el Instituto Nacional de Ciencias Agrícolas (INCA) se evaluó una colección del género Triticum, con el objetivo de conocer el comportamiento de diferentes especies en las condiciones del occidente de Cuba. Las especies estudiadas fueron: Triticum aestivum ssp. aestivum, Triticum turgidum ssp. durum y X Triticum secale Wittmack. Se utilizó un diseño experimental de bloques al azar con cuatro repeticiones. Los caracteres analizados fueron altura de la planta (cm), longitud de las espigas (cm...

  5. ENZYMATIC ACTIVITY AND ANTIBIOTIC RESISTANCE PROFILE OF LACTOBACILLUS PARACASEI SSP. PARACASEI-1 ISOLATED FROM REGIONAL YOGURTS OF BANGLADESH

    Directory of Open Access Journals (Sweden)

    Ummay Honi

    2013-12-01

    Full Text Available Lactobacillus paracasei ssp. paracasei-1 was identified from traditional yogurts of Khulna region, Bangladesh and its enzyme and antibiotic resistance profiles were determined. A commercially available API Zym kit was employed to determine the activities of 19 different enzymes. We found that L. paracasei ssp. paracasei-1 showed strong activities for several enzymes, viz. leucine arylamidase, valine arylamidase, napthol-AS-BI-phosphohydrolase, β-galactosidase, α –Glucosidase, N-Acetyl- β- glucosaminidase while activities for other enzymes were absent. Antibiotic resistance profile was assessed by minimum inhibitory concentration (MIC test for 61 major antibiotics and 4 antifungal agents obtained from commercial sources in MRS Agar media. The strain generally showed resistance to gram negative spectrum antibiotic while it showed susceptibility towards β-lactam antibiotic to gram positive spectrum antibiotic. The findings provide the therapeutic basis of using L. paracasei ssp. paracasei-1 in finished food products.

  6. The Non-universality of the Low-mass End of the IMF is Robust against the Choice of SSP Model

    NARCIS (Netherlands)

    Spiniello, C.; Trager, S. C.; Koopmans, L. V. E.

    2015-01-01

    We perform a direct comparison of two state-of-the art single stellar population (SSP) models that have been used to demonstrate the non-universality of the low-mass end of the initial mass function (IMF) slope. The two public versions of the SSP models are restricted to either solar abundance patte

  7. Viabilidad del desarrollo de alimentos funcionales frescos por incorporación de aloe vera a la matriz estructural de endibia (Cichorium intybus L. var. foliosum), brócoli (Brassica oleracea var. Itálica), coliflor (Brassica oleracea var. Botrytis) y zanahoria (Daucus carota L.) mediante la técnica de impregnación a vacío

    OpenAIRE

    SANZANA RAMOS, SIGRID XIMENA

    2011-01-01

    El vínculo que une la alimentación y la salud es un aspecto que desde hace algunos años marca la evolución de la industria de los alimentos. El origen de los alimentos funcionales, es fruto de esta preocupación, ampliando el concepto de alimentación a la posibilidad de mantener y/o mejorar la salud. Los alimentos funcionales que incluyen, según definición del ILSI, a cualquier alimento o ingrediente del mismo que pueda producir para la salud un beneficio adicional al del valor nutritivo de...

  8. 不同纳米修复剂对污染土壤中胡萝卜吸收、转运Cd的影响%Effects of nanoscale amendments on uptake and transfer of Cd by carrot (Daucus carota) in polluted soils

    Institute of Scientific and Technical Information of China (English)

    王萌; 刘继芳; 陈世宝; 马义兵

    2013-01-01

    通过盆栽实验研究不同纳米修复剂(羟基磷灰石HAP、赤泥RM、Fe3O4、胡敏酸-Fe3O4)对2种不同污染土壤Cd吸收、转运的影响.结果表明,上述纳米修复剂均可显著增加胡萝卜植株生物量,显著提高植株Cd胁迫的耐受指数;不同土壤施用不同纳米修复剂均显著降低胡萝卜植株Cd的含量,并且随着修复剂施加浓度的增加而显著降低;与对照相比,植株茎叶Cd含量最大降低达78.8%,根中Cd的含量最大降低67.8%;添加不同修复剂能不同程度地降低了土壤中Cd的转运系数和富集系数,这可能与施用不同纳米修复剂促进了土壤中非残留态Cd向残留态Cd的转化有关,总体而言,不同纳米型修复剂对降低Cd的有效性顺序为:RM~HAP>胡敏酸-Fe3O4>Fe3O4.%A pot experiment was conducted to study the effects of different nanoscale amendments (hydroxyapatite,red mud,Fe3O4,humic acid (HA)-Fe3O4) on the uptake and transfer of Cd by carrot in two kinds of Cd-polluted soils.The results showed that nanoparticles (NPs) mentioned above could increase plant biomass and tolerance index (TI) of carrot significantly.The application of NPs could decrease the concentration of Cd of different carrot parts,the Cd concentrations in both shoots and roots of carrot decreased with increasing quantities of added NPs.The Cd concentrations in shoots of carrot decreased 78.8%,and in roots 67.8% with the most scope respectively,as compared with the control treatment.The application of nanoscale amendments in polluted soils could decrease transfer factors (TF) and biological concentration factors (BCF) of Cd by carrot with different extent,the transformation of soil Cd from nonresidual fractions to residual fraction substantially after addition of the nano-amendments may contribute to the decrease of TF and BCF.In general,the efficiency of different amendments on the Cd bioavailability reduction followed this order at the equivalent additions:RM ~HAP > HA-Fe3O4 > Fe3O4.

  9. DeSSpOt: an instrument for stellar spin orientation determination

    Science.gov (United States)

    Lesage, Anna-Lea; Schneide, Magnus; Wiedemann, Günter

    2012-09-01

    We designed and constructed a special instrument to enable the determination of the stellar's spin orientation. The Differential image rotator for Stellar Spin Orientation, DeSSpOt, allows the simultaneous observations of two anti-parallel orientations of the star on the spectrum. On a high resolution échelle spectrum, the stellar rotation causes a slight line tilt visible in the spatial direction which is comparable to a rotation curve. We developed a new method, which exploits the variations in these tilts, to estimate the absolute position angle of the rotation axis. The line tilt is retrieved by a spectroastrometric extraction of the spectrum. In order to validate the method, we observed spectroscopic binaries with known orbital parameters. The determination of the orbital position angle is equivalent to the determination of the stellar position angle, but is easier to to detect. DeSSpOt was successfully implemented on the high resolution Coudé spectrograph of the Thüringer Landessternwarte Tautenburg. The observations of Capella led to the determination of the orbital position angle. Our value of 37.2° is in agreement with the values previously found in the literature. As such we verified that both method and instrument are valid.

  10. DeSSpOt: an instrument for stellar spin orientation determination

    CERN Document Server

    Lesage, Anna-Lea; Wiedemann, Günter

    2012-01-01

    We designed and constructed a special instrument to enable the determination of the stellar's spin orientation. The Differential image rotator for Stellar Spin Orientation, DeSSpOt, allows the simultaneous observations of two anti-parallel orientations of the star on the spectrum. On a high resolution \\'echelle spectrum, the stellar rotation causes a slight line tilt visible in the spatial direction which is comparable to a rotation curve. We developed a new method, which exploits the variations in these tilts, to estimate the absolute position angle of the rotation axis. The line tilt is retrieved by a spectro-astrometric extraction of the spectrum. In order to validate the method, we observed spectroscopic binaries with known orbital parameters. The determination of the orbital position angle is equivalent to the determination of the stellar position angle, but is easier to to detect. DeSSpOt was successfully implemented on the high resolution Coud\\'e spectrograph of the Th\\"uringer Landessternwarte Tautenb...

  11. Sida rhombifolia ssp. retusa seed extract inhibits DEN induced murine hepatic preneoplasia and carbon tetrachloride hepatotoxicity.

    Science.gov (United States)

    Poojari, Radhika; Gupta, Sanjay; Maru, Girish; Khade, Bharat; Bhagwat, Sanjay

    2009-01-01

    Sida rhombifolia ssp. retusa is a well established drug in the Ayurvedic system of medicine used for antirheumatism and antiasthmatism. Inhibitory effects of S. rhombifolia ssp. retusa seed extract on DEN induced hepatocellular preneoplastic foci and carbon tetrachloride (CCl4) induced hepatotoxicity was investigated in rats. Rats received DEN, 1ppm/g b.w. in drinking water for 6 weeks or CCl(4), 0.7 ml/kg i.p. once a week for 4 weeks and seed extract 50 mg, 100 mg/kg b.w. orally prior, during and after exposure to DEN/CCl4 for 20 or 5 weeks, respectively. Treatment with seed extract significantly inhibited the increase in DEN/CCl(4) induced activities of pre-cancerous marker enzymes; gamma-glutamyl transpeptidase, glutathione-S-transferase, hepatotoxicity marker enzymes; glutamate pyruvate transaminase, glutamate oxaloacetate transaminase and alkaline phosphatase as well as lipid peroxidase. Depleted glutathione, protein and albumin levels were restored. Also, histopathological and transmission electron microscopic studies showed prevention of cellular degenerative changes. The chemopreventive and hepatoprotective potentials of seed extract are due to free radical scavenging activity and restoration of cellular structural integrity.

  12. Anti-inflammatory activities, triterpenoids, and diarylheptanoids of Alnus acuminata ssp. arguta.

    Science.gov (United States)

    Aguilar, María I; Rovelo, Ricardo; Verjan, Juan G; Illescas, Oscar; Baeza, Ana E; De La Fuente, Marcela; Avila, Ileana; Navarrete, Andrés

    2011-10-01

    The main use of stem bark infusions of Alnus acuminata ssp. arguta (Schlecht.) Furlow (Betulaceae) includes treatments for acute inflammation in Mexican traditional medicine. n-Hexane (CHE), chloroform (CCE), and methanol (CME) extracts of the stem bark were investigated for anti-inflammatory activity and its safety. The anti-inflammatory effects of the orally administered CME, CCE, and CHE extracts, using carrageenan-induced rat hind paw edema model, and acute oral toxicity in mice, using Lorke's method, were determined. The column chromatographic fraction (CME-3) showed a higher anti-inflammatory activity (92.2%) (IC(50): 60.8 mg/mL) as compared with CME (76.9%); both were in the same order of magnitude as that of indomethacin, the positive control drug. Safety parameters for acute oral toxicity test showed that CME was not toxic (LD(50): >5000). Several triterpenoids (1-7) from hexane extracts and diarylheptanoids (10-14) from methanol extracts of A. acuminata ssp. arguta were isolated and characterized. These results confirm the traditional uses of A. acuminata in acute inflammatory conditions and its safety for consumption.

  13. Congenital vestibular disease in captive Sumatran tigers (Panthera tigris ssp. sumatrae) in Australasia.

    Science.gov (United States)

    Wheelhouse, Jaimee L; Hulst, Frances; Beatty, Julia A; Hogg, Carolyn J; Child, Georgina; Wade, Claire M; Barrs, Vanessa R

    2015-11-01

    The Sumatran tiger (Panthera tigris ssp. sumatrae) is a critically endangered species in the wild. To ensure that demographic and genetic integrity are maintained in the longer term, those Sumatran tigers held in captivity are managed as a global population under a World Association of Zoos and Aquariums Global Species Management Plan (GSMP). A retrospective study, including segregation and pedigree analysis, was conducted to investigate potential cases of congenital vestibular disease (CVD) in captive Sumatran tigers in Australasian zoos using medical and husbandry records, as well as video footage obtained from 50 tigers between 1975 and 2013. Data from the GSMP Sumatran tiger studbook were made available for pedigree and segregation analysis. Fourteen cases of CVD in 13 Sumatran tiger cubs and one hybrid cub (Panthera tigris ssp. sumatrae × Panthera tigris) were identified. Vestibular signs including head tilt, circling, ataxia, strabismus and nystagmus were observed between birth and 2 months of age. These clinical signs persisted for a median of 237 days and had resolved by 2 years of age in all cases. Pedigree analysis revealed that all affected tigers were closely related and shared a single common ancestor in the last four generations. A genetic cause for the disease is suspected and, based on pedigree and segregation analysis, an autosomal dominant mode of inheritance is likely. Further investigations to determine the world-wide prevalence and underlying pathology of this disorder are warranted.

  14. The Essential Oil Composition of Tanacetum densum (Labill. Heywood ssp. eginense Heywood from Turkey

    Directory of Open Access Journals (Sweden)

    Kaan Polatoğlu

    2012-07-01

    Full Text Available Water-distilled essential oils from aerial parts of Tanacetum densum (L. Heywood ssp. eginense Heywood, from Turkey was analysed by GC and GC-MS. T. densum ssp. eginense flower, stem and leaf oils were characterized with camphor (30.9% , 25.7%, 27.7%, 1,8-Cineole (12.4% flower oil, camphene (10.6%, %7.0, flower and leaf oils, bornyl acetate, (9.4%, 11.8%, stem and leaf oils, α-pinene (7.0%, %5.3, flower and leaf oils , borneol (5.1%, 5.2%, stem and leaf oils, neodihydrocarveol (5.1%, flower oil. An unidentified compound was also present in flower, stem and leaf oils (11.5%, 27.2%, 20.5%. A comparison is done with the previous investigations on the other subspecies of T. densum and the differences were investigated. Flower and stem oils did not show any significant activity to the tested microorganisms when compared to positive control chloramphenicol. Flower and stem oils both showed cytotoxicity to Vibrio fischeri.

  15. Effect of timing of surgical SSP tendon repair on muscle alterations.

    Science.gov (United States)

    Uhthoff, Hans K; Coletta, Elizabeth; Trudel, Guy

    2014-11-01

    To investigate the impacts of delayed repairs of a supraspinatus tendon tear on the supraspinatus muscle, we used an animal model data from two previously published studies in which one supraspinatus (SSP) tendon was detached. In one cohort, the rabbits were killed in groups of 10 at 4, 8, and 12 weeks. In the other cohort, a repair was done at these time points, 12 rabbits each, and the animals killed were 12 weeks later. SSP fossa volume (Muscle belly plus extramuscular fat [e-fat] volume), percentage of intramuscular fat (i-fat), and muscle tissue volume (muscle belly volume minus i-fat), as well as CT determination of e-fat and i-fat of both cohorts, were compared. Fossa volume increased (p Muscle belly and muscle tissue volumes did not increase after repair (p > 0.05), but early repair prevented further volume losses, a fact not seen after 8 and 12 weeks delay of repair. No reversal of e-fat or of i-fat occurred, in fact i-fat almost doubled after 4 weeks delay of repair (p fat results. We conclude that early repair prevented loss of muscle belly and muscle tissue volumes, but that it has no positive influence on fat accumulation. © 2014 Orthopaedic Research Society. Published by Wiley Periodicals, Inc.

  16. Systems Analysis of Early Host Gene Expression Provides Clues for Transient Mycobacterium avium ssp avium vs. Persistent Mycobacterium avium ssp paratuberculosis Intestinal Infections.

    Science.gov (United States)

    Khare, Sangeeta; Drake, Kenneth L; Lawhon, Sara D; Nunes, Jairo E S; Figueiredo, Josely F; Rossetti, Carlos A; Gull, Tamara; Everts, Robin E; Lewin, Harris A; Adams, Leslie Garry

    It has long been a quest in ruminants to understand how two very similar mycobacterial species, Mycobacterium avium ssp. paratuberculosis (MAP) and Mycobacterium avium ssp. avium (MAA) lead to either a chronic persistent infection or a rapid-transient infection, respectively. Here, we hypothesized that when the host immune response is activated by MAP or MAA, the outcome of the infection depends on the early activation of signaling molecules and host temporal gene expression. To test our hypothesis, ligated jejuno-ileal loops including Peyer's patches in neonatal calves were inoculated with PBS, MAP, or MAA. A temporal analysis of the host transcriptome profile was conducted at several times post-infection (0.5, 1, 2, 4, 8 and 12 hours). When comparing the transcriptional responses of calves infected with the MAA versus MAP, discordant patterns of mucosal expression were clearly evident, and the numbers of unique transcripts altered were moderately less for MAA-infected tissue than were mucosal tissues infected with the MAP. To interpret these complex data, changes in the gene expression were further analyzed by dynamic Bayesian analysis. Bayesian network modeling identified mechanistic genes, gene-to-gene relationships, pathways and Gene Ontologies (GO) biological processes that are involved in specific cell activation during infection. MAP and MAA had significant different pathway perturbation at 0.5 and 12 hours post inoculation. Inverse processes were observed between MAP and MAA response for epithelial cell proliferation, negative regulation of chemotaxis, cell-cell adhesion mediated by integrin and regulation of cytokine-mediated signaling. MAP inoculated tissue had significantly lower expression of phagocytosis receptors such as mannose receptor and complement receptors. This study reveals that perturbation of genes and cellular pathways during MAP infection resulted in host evasion by mucosal membrane barrier weakening to access entry in the ileum

  17. The Salmonella type III effector SspH2 specifically exploits the NLR co-chaperone activity of SGT1 to subvert immunity.

    Directory of Open Access Journals (Sweden)

    Amit P Bhavsar

    Full Text Available To further its pathogenesis, S. Typhimurium delivers effector proteins into host cells, including the novel E3 ubiquitin ligase (NEL effector SspH2. Using model systems in a cross-kingdom approach we gained further insight into the molecular function of this effector. Here, we show that SspH2 modulates innate immunity in both mammalian and plant cells. In mammalian cell culture, SspH2 significantly enhanced Nod1-mediated IL-8 secretion when transiently expressed or bacterially delivered. In addition, SspH2 also enhanced an Rx-dependent hypersensitive response in planta. In both of these nucleotide-binding leucine rich repeat receptor (NLR model systems, SspH2-mediated phenotypes required its catalytic E3 ubiquitin ligase activity and interaction with the conserved host protein SGT1. SGT1 has an essential cell cycle function and an additional function as an NLR co-chaperone in animal and plant cells. Interaction between SspH2 and SGT1 was restricted to SGT1 proteins that have NLR co-chaperone function and accordingly, SspH2 did not affect SGT1 cell cycle functions. Mechanistic studies revealed that SspH2 interacted with, and ubiquitinated Nod1 and could induce Nod1 activity in an agonist-independent manner if catalytically active. Interestingly, SspH2 in vitro ubiquitination activity and protein stability were enhanced by SGT1. Overall, this work adds to our understanding of the sophisticated mechanisms used by bacterial effectors to co-opt host pathways by demonstrating that SspH2 can subvert immune responses by selectively exploiting the functions of a conserved host co-chaperone.

  18. Molecular Characterization of Two Silenced y-type Genes for Glu-B1 in Triticum aestivum ssp. yunnanese and ssp. tibetanum

    Institute of Scientific and Technical Information of China (English)

    Zhong-Wei Yuan; Qi-Jiao Chen; Lian-Quan Zhang; Ze-Hong Yan; You-Liang Zheng; Deng-Cai Liu

    2009-01-01

    The high molecular weight glutenln subunits (HMW-GSs) are a major class of common wheat storage proteins. The bread-making quality of common wheat flour is influenced by the composition of HMW-GSs. In the present study, two unexpressed 1By genes from Triticum aesitvum L.ssp.yunnanese AS332 and T. aesitvum sep.tibetanum AS908 were respectively cloned and characterized. The results indicated that both of the silenced 1By genes in AS332 and AS908 were 1By9. in contrast to previously reported mechanisms for silenced genes 1Ax and 1Ay, which was due to the insertion of transposon elements or the presence of premature stop codon via base substitution of C→T transition in tdnucleotides CAA or CAG, the silence of 1By9 genes was caused by premature stop codons via the deletion of base A in tdnucleotide CAA, which lead to frameshift mutation and indirectly produced several premature stop codons (TAG) downstream of the coding sequence.

  19. Intrascrotal Abscess, Propionibacterium acnes and Staphylococcus cohnii ssp. cohnii: A Case Report and Review of the Literature

    Directory of Open Access Journals (Sweden)

    Masciovecchio Stefano

    2012-01-01

    Full Text Available Introduction. The Propionibacterium acnes and the Staphylococcus cohnii ssp. cohnii are occasional pathogenic bacteria. The intrascrotal localization of the Propionibacterium acnes is exceptional. The Staphylococcus cohnii ssp. cohnii is not able to colonize the urogenital apparatus but it is the most frequently responsible for blood culture contamination even if it can sustain, in particular conditions, systemic infections. Case Presentation. We report the case of a 72-year-old man who is under observation for pain and swelling of the left hemiscrotum associated to high fever. The scrotal ultrasound shows the presence of a left intra-scrotal abscess with didymus, epididymis, and intact didymus-epididymis tunicae. The blood culture executed for evening fever during antibiotic therapy has underlined an infection with Propionibacterium acnes. A following blood culture has shown an increase in Staphylococcus cohnii ssp. cohnii. Due to fever the patient has undergone left orchifunicolectomy with inguino-scrotal toilet. The anatomical pathological examination has also shown the presence of nonspecific granulomatous inflammation compatible with Propionibacterium acnes infection. Conclusion. The onset of an intrascrotal abscess likely sustained by Propionibacterium acnes complicated by a possible systemic Staphylococcus cohnii ssp. cohnii suprainfection is an exceptional event that, in our case, has been resolved with surgical toilet.

  20. Poplar root exudates contain compounds that induce the expression of MiSSP7 in Laccaria bicolor.

    Science.gov (United States)

    Plett, Jonathan M; Martin, Francis

    2012-01-01

    Communication between organisms is crucial for their survival, especially for sessile organisms such as plants that depend upon interactions with mutualistic organisms to maximize their nutrient acquisition. This communication can take the form of the exchange of volatile compounds, metabolites or effectors - small protein signals secreted from the colonizing cell that change the biology of the host cell.  We recently characterized the first mutualistic effector protein from an ectomycorrhizal fungus, a small secreted protein named MiSSP7 encoded by Laccaria bicolor.  Ectomycorrhizal fungi are soil-borne mutualistic organisms whose hyphae wrap around host roots and grow into the root apoplastic space where the fungus exchanges nutrients such as nitrogen and phosphorus in return for plant derived sugars.  The MiSSP7 protein is induced by root exudates and is highly expressed throughout the root colonization process.  Its presence was responsible for alterations to the plant transcriptomic profile, a mechanism by which MiSSP7 may aid in the formation of the symbiotic interface. Here we further discuss the implications of these findings and, further, we demonstrate that the production of MiSSP7 is induced by two flavonoids, rutin and quercitrin, a class of compounds normally found within the exudates of plant roots.  We also consider the interesting similarities between the mechanisms of effector induction and action between pathogenic and mutualistic fungi.  

  1. Chemical composition and antifungal activities of essential oils of Satureja thymbra L. and Salvia pomifera ssp. calycina (Sm.) Hayek

    NARCIS (Netherlands)

    Glamoclija, J.; Sokovic, M.; Vukojevic, J.; Milenkovic, I.; Griensven, van L.J.L.D.

    2006-01-01

    This work covers the chemical composition and antifungal activities of essential oils isolated from savory (Satureja thymbra) and sage (Salvia pomifera ssp. calycina) analyzed using GC/MS. The main components of S. thymbra oil were gamma-terpinene (23.2%) and carvacrol (48.5%). The main components

  2. Growth Responses of Plantago major L. ssp. pleiosperma (Pilger) to Changes in Mineral Supply : Evidence for Regulation by Cytokinins.

    Science.gov (United States)

    Kuiper, D

    1988-07-01

    Plants of an inbred line of Plantago major ssp. pleiosperma were subjected to an alteration in mineral supply. Observed responses of growth rate and shoot to root ratio are thought to be induced by changes in endogenous cytokinin concentration and not by mineral concentration in plant tissue.

  3. Effect of a switch from elevated to ambient CO2 on growth and carbohydrate allocation of Plantago major ssp pleiosperma

    NARCIS (Netherlands)

    Fonseca, F; Stulen, [No Value

    2000-01-01

    Transfer of plants of Plantago major ssp. pleiosperma (L.) Pilger to elevated CO2 (700 mul l(-1)) showed a transient stimulation of the relative growth rate (RGR). Thereafter the RGR of the plants grown at elevated CO2 was the same as for plants grown at ambient CO2 (350 mul l(-1)). At that time sta

  4. CITOGENETICS EFFECTS INDUCED BY THE ASCORBIC ACID TREATMENT OF LARIX DECIDUA MILL. SSP. CARPATICA AND PICEA ABIES (L. KARST

    Directory of Open Access Journals (Sweden)

    Ioana Ieremia

    2006-08-01

    Full Text Available The paper present the influence of ascorbic acid upon the mitotic division of Larix decidua Mill ssp. carpatica and Picea abies (L. Karst. The treatment is applied of two variants, germinated seed in ascorbic acid (variantAand germinated seeds in disttilate water, than treated with ascorbic acid in 3 concentrations (variant B.

  5. Chemical composition and antifungal activities of essential oils of Satureja thymbra L. and Salvia pomifera ssp. calycina (Sm.) Hayek

    NARCIS (Netherlands)

    Glamoclija, J.; Sokovic, M.; Vukojevic, J.; Milenkovic, I.; Griensven, van L.J.L.D.

    2006-01-01

    This work covers the chemical composition and antifungal activities of essential oils isolated from savory (Satureja thymbra) and sage (Salvia pomifera ssp. calycina) analyzed using GC/MS. The main components of S. thymbra oil were gamma-terpinene (23.2%) and carvacrol (48.5%). The main components i

  6. Scirpus lacustris L. ssp. glaucus (Sm.) Hartm. x Scirpus triqueter L. (S. X scheuchzeri Brügg.) in Nederland

    NARCIS (Netherlands)

    Bakker, D.

    1968-01-01

    The hybrid of Scirpus lacustris L. ssp. glaucus (Sm.) Hartm. and Scirpus triqueter L. (S. X scheuchzeri Brügg.) was found in several localities of the tidal fresh water area in the Netherlands. It is discussed that this hybrid may be regarded as a fertile hybrid swarm of the species mentioned.

  7. Fate of Clavibacter michiganensis ssp. sepedonicus, the causal organism of bacterial ring rot in potato, in weeds and field crops.

    NARCIS (Netherlands)

    Wolf, van der J.M.; Beckhoven, van J.R.C.M.; Hukkanen, A.; Karjalainen, R.; Muller, P.

    2005-01-01

    Crops and weeds were tested for their ability to host Clavibacter michiganensis ssp. sepedonicus (Cms), the causal agent of bacterial ring rot in potato. Ten crops grown in rotation with potato in Europe, namely maize, wheat, barley, oat, bush bean, broad bean, rape, pea and onion and five cultivars

  8. The effects of progressing and nonprogressing Mycobacterium avium ssp. paratuberculosis infection on milk production in dairy cows

    NARCIS (Netherlands)

    Smith, Rebecca L.; Gröhn, Y. T.; Pradhan, A. K.; Whitlock, R. H.; Van Kessel, J. S.; Smith, J. M.; Wolfgang, D. R.; Schukken, Y. H.

    2016-01-01

    Longitudinal data from 3 commercial dairy herds in the northeast United States, collected from 2004 to 2011, were analyzed to determine the effect of Mycobacterium avium ssp. paratuberculosis (MAP) infection status and progression path on milk production. Disease status, as indicated by MAP test res

  9. The response of Plantago major ssp pleiosperma to elevated CO2 is modulated by the formation of secondary shoots

    NARCIS (Netherlands)

    Fonseca, F; DenHertog, J; Stulen, [No Value

    1996-01-01

    The effect of elevated CO2 on the relative growth rate (RGR) of Plantago major ssp. pleiosperma was studied during the vegetative stage, in relation to plant development, by growing plants at 350 mu l l(-1) or at 700 mu l l(-1) CO2 in non-limiting nutrient solution with nitrate. To minimize interfer

  10. Analysis of expressed sequence tags from Musa acuminata ssp. burmannicoides, var. Calcutta 4 (AA) leaves submitted to temperature stresses

    NARCIS (Netherlands)

    Santos, C.R.; Martins, N.F.; Horberg, H.M.; Almeida, E.R.P.; Coelho, M.C.F.; Togawa, R.; Silva, F.R.; Caetano, A.R.; Miller, R.N.G.; Souza, M.T.

    2005-01-01

    In order to discover genes expressed in leaves of Musa acuminata ssp. burmannicoides var. Calcutta 4 (AA), from plants submitted to temperature stress, we produced and characterized two full-length enriched cDNA libraries. Total RNA from plants subjected to temperatures ranging from 5°C to 25°C and

  11. Fate of Clavibacter michiganensis ssp. sepedonicus, the causal organism of bacterial ring rot in potato, in weeds and field crops.

    NARCIS (Netherlands)

    Wolf, van der J.M.; Beckhoven, van J.R.C.M.; Hukkanen, A.; Karjalainen, R.; Muller, P.

    2005-01-01

    Crops and weeds were tested for their ability to host Clavibacter michiganensis ssp. sepedonicus (Cms), the causal agent of bacterial ring rot in potato. Ten crops grown in rotation with potato in Europe, namely maize, wheat, barley, oat, bush bean, broad bean, rape, pea and onion and five cultivars

  12. Identification of a small molecule that modifies MglA/SspA interaction and impairs intramacrophage survival of Francisella tularensis.

    Directory of Open Access Journals (Sweden)

    Algevis P Wrench

    Full Text Available The transcription factors MglA and SspA of Francisella tularensis form a heterodimer complex and interact with the RNA polymerase to regulate the expression of the Francisella pathogenicity island (FPI genes. These genes are essential for this pathogen's virulence and survival within host cells. In this study, we used a small molecule screening to identify quinacrine as a thermal stabilizing compound for F. tularensis SCHU S4 MglA and SspA. A bacterial two-hybrid system was used to analyze the in vivo effect of quinacrine on the heterodimer complex. The results show that quinacrine affects the interaction between MglA and SspA, indicated by decreased β-galactosidase activity. Further in vitro analyses, using size exclusion chromatography, indicated that quinacrine does not disrupt the heterodimer formation, however, changes in the alpha helix content were confirmed by circular dichroism. Structure-guided site-directed mutagenesis experiments indicated that quinacrine makes contact with amino acid residues Y63 in MglA, and K97 in SspA, both located in the "cleft" of the interacting surfaces. In F. tularensis subsp. novicida, quinacrine decreased the transcription of the FPI genes, iglA, iglD, pdpD and pdpA. As a consequence, the intramacrophage survival capabilities of the bacteria were affected. These results support use of the MglA/SspA interacting surface, and quinacrine's chemical scaffold, for the design of high affinity molecules that will function as therapeutics for the treatment of Tularemia.

  13. The identification of MacSe in Streptococcus equi ssp. equi

    Institute of Scientific and Technical Information of China (English)

    Jiande YANG; Yanfei LIU; Jun XU; Jifei MA

    2009-01-01

    Streptococcus equi subsp, equi (S. equi ssp. equi) causes equine strangles, a highly contagious and widespread purulent lymphadenitis of the head and neck. We have identified MacSe, a novel protein of S. equi, by screening a phage library of 3-8 kb random DNA fragments of S. equi CF32. MacSe shares 62% and 67.5% amino acid homology with Mac5005 and Mac8345 of S. pyogenes respectively. Expression during infection was shown by strong reactivity of the protein with convalescent sera and mucosal wash IgA of ponies infected by commingling exposure. Release into the culture medium was detected during the log phase of growth. Dose dependent anti-phagocytic activity for equine neutrophils involved interaction of MacSe with C3 and neutrophils.

  14. Full scale test SSP 34m blade, combined load. Data report

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Per H.; Nielsen, Magda; Jensen, Find M. (and others)

    2010-11-15

    This report is part of the research project where a 34m wind turbine blade from SSP-Technology A/S was tested in combined flap and edgewise load. The applied load is 55% of an imaginary extreme event based on the certification load of the blade. This report describes the reason for choosing the loads and the load direction and the method of applying the loads to the blade. A novel load introduction allows the blade to deform in a more realistic manner, allowing the observation of e.g. transverse shear distortion. The global and local deformation of the blade as well as the blades' respond to repeated tests has been studied and the result from these investigations are presented, including the measurements performed. (Author)

  15. Effect of explant origin and different growth regulators on micropropagation of Pistacia atlantica ssp. mutica

    Directory of Open Access Journals (Sweden)

    Ali-Ashraf Mehrabi

    2015-06-01

    Full Text Available Propagation of wild pistachio as a multipurpose woody species is a hard and tedious task. In this research, an effective in vitro protocol was developed for rapid proliferation of wild pistachio (Pistacia atlantica ssp. mutica in MS medium supplemented with B5 vitamins and different growth regulators. Rooting of plantlets was tested by two treatments containing Rhizopon and IBA in ex vitro. With respect to the results, the nodal segments explants, produced the highest shoot frequency, leaf frequency and the tallest shoots. On the other hand, the tallest shoots were generated from shoot tip explant and medium containing of TDZ plus IAA. Both treatments (Rhizopon and IBA led to a remarkable increase in the number of roots, root length and rooting percentage compared to the control. These results may be applied for rapid proliferation to spread the pistachio trees and shrubs that are difficult and time consuming.

  16. Herbaspirillum sp. strain GW103 alleviates salt stress in Brassica rapa L. ssp. pekinensis.

    Science.gov (United States)

    Lee, Gun Woong; Lee, Kui-Jae; Chae, Jong-Chan

    2016-05-01

    Mutual interactions between plant and rhizosphere bacteria facilitate plant growth and reduce risks of biotic and abiotic stresses. The present study demonstrates alleviation of salt stress in Brassica rapa L. ssp. perkinensis (Chinese cabbage) by Herbaspirillum sp. strain GW103 isolated from rhizosphere soil of Phragmites australis. The strain was capable of producing plant beneficial factors, such as auxin, siderophore, and 1-aminocylopropane-1-carboxylic acid deaminase. Treatment of strain GW103 on Chinese cabbage under salt stress increased K(+)/Na(+) ratio in roots generating balance in the ratio of ion homeostasis and consequently contributed to the increase of biomass. In addition, root colonization potential of the strain was observed by green fluorescent protein (GFP)-tagging approach. These results strongly suggest the beneficial impact of strain GW103 by inducing the alleviation of salt stress and development of stress tolerance in Chinese cabbage via plant-microbe interaction.

  17. Identification of Heat Tolerance Linked Molecular Markers of Chinese Cabbage (Brassica campestris L.ssp. pekinensis)

    Institute of Scientific and Technical Information of China (English)

    ZHENG Xiao-ying; WANG Yong-jian; SONG Shun-hua; LI Li; YU Shuan-cang

    2002-01-01

    Genetically stable population of recombination inbred line (RIL) was derived from a cross between a heat tolerant line 177 and a heat sensitive line 276 of Chinese cabbage (Brassica campestris L. ssp.pekinensis ) by single seed descent. The RILs were analyzed using isozyme, RAPD and AFLP techniques in order to find molecular markers that are linked to heat tolerance quantitative trait loci (QTL). The results of variance analysis of single factor indicated that there were 9 molecular markers closely linked with heat tolerance QTL, including 5 AFLP markers, 3 RAPD markers and 1 PGM isozyme marker. Total genetic contribution of these makers to heat tolerance was 46.7%. Five of the nine markers distributed in one linkage group,the remaining 4 markers were located in separate groups. Thus the 9 heat tolerance linked markers distributed in 5 independent locations in the genome of Chinese cabbage.

  18. New Benzophenones and Xanthones from Cratoxylum sumatranum ssp. neriifolium and Their Antibacterial and Antioxidant Activities.

    Science.gov (United States)

    Tantapakul, Cholpisut; Maneerat, Wisanu; Sripisut, Tawanun; Ritthiwigrom, Thunwadee; Andersen, Raymond J; Cheng, Ping; Cheenpracha, Sarot; Raksat, Achara; Laphookhieo, Surat

    2016-11-23

    Two new benzophenones (1 and 2) and four new xanthones (4-6 and 17) together with 24 known compounds (3, 7-16, and 18-30) were isolated from the roots and twigs of Cratoxylum sumatranum ssp. neriifolium. Their structures were elucidated by spectroscopic methods. Compounds 5 and 26 showed antibacterial activity against Micrococcus luteus, Bacillus cereus, and Staphylococcus epidermis with minimum inhibitory concentrations ranging from 4 to 8 μg/mL, whereas compounds 7, 20, and 26 displayed selective antibacterial activities against Staphylococcus aureus (8 μg/mL), Salmonella typhimurium (4 μg/mL), and Pseudomonas aeruginosa (4 μg/mL), respectively. The radical scavenging effects of some isolated compounds were investigated. Compounds 11 and 21 exhibited potent activity against 2,2-diphenyl-1-picrylhydrazyl (DPPH) with IC50 values of 7.0 ± 1.0 and 6.0 ± 0.2 μM, respectively.

  19. Variations in the mosquito larvicidal activities of toxins from Bacillus thuringiensis ssp. israelensis.

    Science.gov (United States)

    Otieno-Ayayo, Zachariah Ngalo; Zaritsky, Arieh; Wirth, Margaret C; Manasherob, Robert; Khasdan, Vadim; Cahan, Rivka; Ben-Dov, Eitan

    2008-09-01

    Comparing activities of purified toxins from Bacillus thuringiensis ssp. israelensis against larvae of seven mosquito species (vectors of tropical diseases) that belong to three genera, gleaned from the literature, disclosed highly significant variations in the levels of LC(50) as well as in the hierarchy of susceptibilities. Similar toxicity comparisons were performed between nine transgenic Gram-negative species, four of which are cyanobacterial, expressing various combinations of cry genes, cyt1Aa and p20, against larvae of four mosquito species as potential agents for biological control. Reasons for inconsistencies are listed and discussed. Standard conditions for toxin isolation and presentation to larvae are sought. A set of lyophilized powders prepared identically from six Escherichia coli clones expressing combinations of four genes displayed toxicities against larvae of three mosquito species, with levels that differed between them but with identical hierarchy.

  20. meta-Tyrosine in Festuca rubra ssp. commutata (Chewings fescue) is synthesized by hydroxylation of phenylalanine.

    Science.gov (United States)

    Huang, Tengfang; Rehak, Ludmila; Jander, Georg

    2012-03-01

    m-Tyrosine is a non-protein amino acid that is structurally similar to the common protein amino acids p-tyrosine and phenylalanine. Copious amounts of m-tyrosine can be found in root exudates of the fine fescue cultivar, Festuca rubra L. ssp. commutata (Chewings fescue). The phytotoxicity of m-tyrosine may contribute to the allelopathic potential of F. rubra. m-Tyrosine in Euphorbia myrsinites (donkey-tail spurge), was previously shown to be synthesized via transamination of m-hydroxyphenylpyruvate. Here we show that m-tyrosine biosynthesis in F. rubra occurs through direct hydroxylation of phenylalanine in the root tips, perhaps through the activity of a cytochrome P450 enzyme. Hence, E. myrsinites and F. rubra, the only two plant species known to produce m-tyrosine, use distinct biosynthetic pathways that likely arose independently in evolutionary history.

  1. VizieR Online Data Catalog: SSP in NIR. II. Synthesis models (Meneses-Goytia+, 2015)

    Science.gov (United States)

    Meneses-Goytia, S.; Peletier, R. F.; Trager, S. C.; Vazdekis, A.

    2015-08-01

    The present Single Stellar Populations (SSP) models are derived from my Ph.D.'s thesis and this paper. The following nomenclature is used throughout the paper and the website (http://smg.astro-research.net/ssp-models/the-models/) to describe the models, e.g. MarS models use the M08 isochrones (Mar) and the Salpeter (S) IMF. General information about the models is given in table1. For further information, please refer to the paper. Each set of models and their corresponding predictions are available in the website and VIZIER. The spectral energy distributions (SEDs) can be downloaded in a zip-file from those pages in ascii format . The spectral energy distributions (SEDs) can be downloaded in a zip-file from t hose pages in ascii format . The nomenclature of each SED is as follows: isochroneIMFsedXXXXHZX.XXXXXXXXXTgXX.XXXXXXXe+XX - where XXXX tells whether those models contain C-stars or no (COMBO or NOCS respectively) H is the spectral band in which normalization occurred Z_X.XXXXXXXXX is the metallicity in terms of Z Tg_XX.XXXXXXXe+XX is the age in years. Each set of models contains MarS - 96 SEDs GirS - 96 SEDs BaSS - 116 SEDs We have also included in the websites the Integrated colours and line-strength indices from all our models (MarS, GirS and BaSS). The SEDs were convolved to a velocity dispersion of 350km/s before calculating indices. (5 data files).

  2. Wild carrot pentane-based fractions suppress proliferation of human HaCaT keratinocytes and protect against chemically-induced skin cancer.

    Science.gov (United States)

    Shebaby, Wassim N; Mroueh, Mohamad A; Boukamp, Petra; Taleb, Robin I; Bodman-Smith, Kikki; El-Sibai, Mirvat; Daher, Costantine F

    2017-01-10

    Previous studies in our laboratory showed that the Lebanese Daucus carota ssp. carota (wild carrot) oil extract possesses in vitro and in vivo anticancer activities. The present study aims to examine the cytotoxic effect of Daucus carota oil fractions on human epidermal keratinocytes and evaluate the chemopreventive activity of the pentane diethyl ether fraction on DMBA/TPA induced skin carcinogenesis in mice. Wild carrot oil extract was chromatographed to yield four fractions (F1, 100% pentane; F2, 50:50 pentane:diethyl ether; F3, 100% diethyl ether; F4 93:7 chloroform:methanol). The cytotoxic effect of fractions (10, 25, 50 and 100 μg/mL) was tested on human epidermal keratinocytes (non-tumorigenic HaCaT cells and tumorigenic HaCaT-ras variants) using WST a ssay. Cell cycle phase distribution of tumorigenic HaCaT-ras variants was determined by flow cytometry post-treatment with F2 fraction. Apoptosis related proteins were also assessed using western blot. The antitumor activity of F2 fraction was also evaluated using a DMBA/TPA induced skin carcinoma in Balb/c mice. All fractions exhibited significant cytotoxicity, with HaCaT cells being 2.4-3 times less sensitive than HaCaT-ras A5 (benign tumorigenic), and HaCaT-ras II4 (malignant) cells. GC-MS analysis revealed the presence of a major compound (around 60%) in the pentane/diethylether fraction (F2), identified as 2-himachalen-6-ol. Treatment of HaCaT-ras A5 and HaCaT-ras II4 cells with F2 fraction resulted in the accumulation of cells in the sub-G1 apoptotic phase and decreased the population of cells in the S and G2/M phases. Additionally, F2 fraction treatment caused an up-regulation of the expression of pro-apoptotic (Bax) and down-regulation of the expression of anti-apoptotic (Bcl2) proteins. A decrease in the phosphorylation of AKT and ERK was also observed. Intraperitoneal treatment with F2 fraction (50 or 200 mg/kg) in the DMBA/TPA skin carcinogenesis mouse model showed a significant inhibition of

  3. Chemical composition of the essential oils of the berries of Juniperus oxycedrus L. ssp. rufescens (L. K.) and Juniperus oxycedrus L. ssp. macrocarpa (S. & m.) Ball. and their antioxidant activities.

    Science.gov (United States)

    Hanène, Medini; Ameur, Elaissi; Larbi, Khouja Med; Piras, Alessandra; Porcedda, Silvia; Falconieri, Danilo; Marongiu, Bruno; Farhat, Farhat; Chemli, Rachid

    2012-01-01

    This study is outlined to probe the chemical composition of essential oil and in vitro antioxidant activity of Juniperus oxycedrus ssp. macrocarpa (S. & m.) Ball. and Juniperus oxycedrus L. ssp. rufescens (L. K.) berries, collected from four sites, according to their maturity phase. The chemical composition of the hydrodistilled essential oil was analysed by GC-MS. Forty-eight compounds were identified, accounting for approximately 79.8-98.9% of the oil. The main constituents were α-pinene, germacrene D, myrcene, abietadiene and cis-calamenene, their mean percentage vary according to their phenological stage. The antioxidant activity of the samples was determined by the ABTS and DPPH radical scavenging activities. Hawaria essential oil extracted from mature berries showed the highest antioxidant capacity.

  4. Immunoreactive proteins of Bifidobacterium longum ssp. longum CCM 7952 and Bifidobacterium longum ssp. longum CCDM 372 identified by gnotobiotic mono-colonized mice sera, immune rabbit sera and nonimmune human sera.

    Directory of Open Access Journals (Sweden)

    Sabina Górska

    2016-09-01

    Full Text Available The Bifidobacteria show great diversity in the cell surface architecture which may influence the physicochemical properties of the bacterial cell and strain specific properties. The immunomodulatory role of bifidobacteria has been extensively studied, however studies on the immunoreactivity of their protein molecules are very limited. Here, we compared six different methods of protein isolation and purification and we report identification of immunogenic and immunoreactive protein of two human Bifidobacterium longum ssp. longum strains. We evaluated potential immunoreactive properties of proteins employing polyclonal sera obtained from germ free mouse, rabbit and human. The protein yield was isolation method-dependent and the reactivity of proteins detected by SDS-PAGE and Western blotting was heterogeneous and varied between different serum samples. The proteins with the highest immunoreactivity were isolated, purified and have them sequenced. Among the immunoreactive proteins we identified enolase, aspartokinase, pyruvate kinase, DnaK (B. longum ssp. longum CCM 7952 and sugar ABC transporter ATP-binding protein, phosphoglycerate kinase, peptidoglycan synthethase penicillin-binding protein 3, transaldolase, ribosomal proteins and glyceraldehyde 3-phosphate dehydrogenase (B. longum ssp. longum CCDM 372.

  5. Die Coenologie der Narzisse (Narcissus poeticus L. ssp. stellaris (Haw.) Dost.) in den Karpaten im Vergleich zu ihrer Vergesellschaftung in anderen Teilen Europas

    OpenAIRE

    Dragulescu, Constantin

    1987-01-01

    Das Vorkommen von Narcissus poëticus ssp. stellaris in verschiedenen Pflanzengesellschaften der Karpaten wird beschrieben und mit anderen Teilen Europas verglichen. In den Karpaten hat die Art ihr Optimum in mesophilen bis meso-hydrophilen Gesellschaften der Molinio-Arrhenatheretea und hier im Molinion und Cynosurion, in Mittel- und Westeuropa dagegen im Triseto-Polygonion. The appearance of Narcissus poeticus ssp. stellaris in different plant communities is described and compared with oth...

  6. Generation and characterization of Brassica rapa ssp. pekinensis – B. oleracea var. capitata monosomic and disomic alien addition lines

    Indian Academy of Sciences (India)

    Ai xia Gu; Shu Xing Shen; Yan Hua Wang; Jian Jun Zhao; Shu Xin Xuan; Xue Ping Chen; Xiao Feng Li; Shuang Xia Luo; Yu Jing Zhao

    2015-09-01

    Five monosomic alien addition lines (MAALs) of Brassica rapa ssp. pekinensis – B. oleracea var. capitata were obtained by hybridization and backcrossing between B. rapa ssp. pekinensis (female parent) and B. oleracea var. capitata. The alien linkage groups were identified using 42 B. oleracea var. capitata linkage group-specific markers as B. oleracea linkage groups C2, C3, C6, C7 and C8. Based on the chromosomal karyotype of root tip cells, these five MAALs added individual chromosomes from B. oleracea var. capitata: chr 1 (the longest), chr 2 or 3, chr 5 (small locus of 25S rDNA), chr 7 (satellite-carrying) and chr 9 (the shortest). Five disomic alien addition lines were then generated by selfing their corresponding MAALs.

  7. Analysis of essential oils from Scutellaria orientalis ssp. alpina and S. utriculata by GC and GC-MS.

    Science.gov (United States)

    Formisano, Carmen; Rigano, Daniela; Senatore, Felice; Piozzi, Franco; Arnold, Nelly Apostolides

    2011-09-01

    The chemical composition of the essential oils obtained from aerial parts of Scutellaria orientalis L. ssp. alpina (Boiss.) O. Schwarz and S. utriculata Labill. growing wild in Lebanon, were analyzed by GC and GC-MS. In S. orientalis ssp. alpina, strongly characterized by sesquiterpenes (41.2%) and particularly sesquiterpene hydrocarbons (31.7%), hexahydrofarnesylacetone (11.7%) was recognized as the main constituent, together with hexadecanoic acid (7.6%), caryophyllene (7.4%), caryophyllene oxide (6.8%), 4-vinylguaiacol (5.4%) and germacrene D (5.4%). S. utriculata oil was instead constituted above all by monoterpenes (42.2%), particularly oxygen containing monoterpenes (39.9%), and in this oil the main compounds were linalool (20.1%), 4-vinyl guaiacol (15.5%), alpha-terpineol (8.9%), (E)-nerolidol (8.9%) and geraniol (8.2%).

  8. Characterizing the Syphilis-Causing Treponema pallidum ssp. pallidum Proteome Using Complementary Mass Spectrometry

    Science.gov (United States)

    Houston, Simon; Lithgow, Karen V.; Meehan, Conor J.; Strouhal, Michal; Šmajs, David; Cameron, Caroline E.; Van Ostade, Xaveer; Kenyon, Chris R.; Van Raemdonck, Geert A.

    2016-01-01

    Background The spirochete bacterium Treponema pallidum ssp. pallidum is the etiological agent of syphilis, a chronic multistage disease. Little is known about the global T. pallidum proteome, therefore mass spectrometry studies are needed to bring insights into pathogenicity and protein expression profiles during infection. Methodology/Principal Findings To better understand the T. pallidum proteome profile during infection, we studied T. pallidum ssp. pallidum DAL-1 strain bacteria isolated from rabbits using complementary mass spectrometry techniques, including multidimensional peptide separation and protein identification via matrix-assisted laser desorption ionization-time of flight (MALDI-TOF/TOF) and electrospray ionization (ESI-LTQ-Orbitrap) tandem mass spectrometry. A total of 6033 peptides were detected, corresponding to 557 unique T. pallidum proteins at a high level of confidence, representing 54% of the predicted proteome. A previous gel-based T. pallidum MS proteome study detected 58 of these proteins. One hundred fourteen of the detected proteins were previously annotated as hypothetical or uncharacterized proteins; this is the first account of 106 of these proteins at the protein level. Detected proteins were characterized according to their predicted biological function and localization; half were allocated into a wide range of functional categories. Proteins annotated as potential membrane proteins and proteins with unclear functional annotations were subjected to an additional bioinformatics pipeline analysis to facilitate further characterization. A total of 116 potential membrane proteins were identified, of which 16 have evidence supporting outer membrane localization. We found 8/12 proteins related to the paralogous tpr gene family: TprB, TprC/D, TprE, TprG, TprH, TprI and TprJ. Protein abundance was semi-quantified using label-free spectral counting methods. A low correlation (r = 0.26) was found between previous microarray signal data and

  9. Computer-assisted diagnostic system for neurodegenerative dementia using brain SPECT and 3D-SSP

    Energy Technology Data Exchange (ETDEWEB)

    Ishii, Kazunari; Kanda, Tomonori; Uemura, Takafumi; Miyamoto, Naokazu; Yoshikawa, Toshiki [Hyogo Brain and Heart Center, Department of Radiology and Nuclear Medicine, Himeji, Hyogo (Japan); Shimada, Kenichi; Ohkawa, Shingo [Hyogo Brain and Heart Center, Institute for Aging Brain and Cognitive Disorders, Himeji, Hyogo (Japan); Minoshima, Satoshi [University of Washington, Radiology and Bioengineering, Department of Radiology, Seattle, WA (United States)

    2009-05-15

    To develop a computer-assisted automated diagnostic system to distinguish among Alzheimer disease (AD), dementia with Lewy bodies (DLB), and other degenerative disorders in patients with mild dementia. Single photon emission computed tomography (SPECT) images with injection of N-Isopropyl-p-[{sup 123}I]iodoamphetamine (IMP) were obtained from patients with mild degenerative dementia. First, datasets from 20 patients mild AD, 15 patients with dementia with DLB, and 17 healthy controls were used to develop an automated diagnosing system based on three-dimensional stereotactic surface projections (3D-SSP). AD- and DLB-specific regional templates were created using 3D-SSP, and critical Z scores in the templates were established. Datasets from 50 AD patients, 8 DLB patients, and 10 patients with non-AD/DLB type degenerative dementia (5 with frontotemporal dementia and 5 with progressive supranuclear palsy) were then used to test the diagnostic accuracy of the optimized automated system in comparison to the diagnostic interpretation of conventional IMP-SPECT images. These comparisons were performed to differentiate AD and DLB from non-AD/DLB and to distinguish AD from DLB. A receiver operating characteristic (ROC) analysis was performed. The area under the ROC curve (Az) and the accuracy of the automated diagnosis system were 0.89 and 82%, respectively, for AD/DLB vs. non-AD/DLB patients, and 0.70 and 65%, respectively, for AD vs. DLB patients. The mean Az and the accuracy of the visual inspection were 0.84 and 77%, respectively, for AD/DLB vs. non-AD/DLB patients, and 0.70 and 65%, respectively, for AD vs. DLB patients. The mean Az and the accuracy of the combination of visual inspection and this system were 0.96 and 91%, respectively, for AD/DLB vs. non-AD/DLB patients, and 0.70 and 66%, respectively, for AD vs. DLB patients. The system developed in the present study achieved as good discrimination of AD, DLB, and other degenerative disorders in patients with mild

  10. Schizosaccharomyces pombe cell division cycle under limited glucose requires Ssp1 kinase, the putative CaMKK, and Sds23, a PP2A-related phosphatase inhibitor.

    Science.gov (United States)

    Hanyu, Yuichiro; Imai, Kumiko K; Kawasaki, Yosuke; Nakamura, Takahiro; Nakaseko, Yukinobu; Nagao, Koji; Kokubu, Aya; Ebe, Masahiro; Fujisawa, Asuka; Hayashi, Takeshi; Obuse, Chikashi; Yanagida, Mitsuhiro

    2009-05-01

    Calcium/calmodulin-dependent protein kinase (CaMK) is required for diverse cellular functions, and similar kinases exist in fungi. Although mammalian CaMK kinase (CaMKK) activates CaMK and also evolutionarily-conserved AMP-activated protein kinase (AMPK), CaMKK is yet to be established in yeast. We here report that the fission yeast Schizosaccharomyces pombe Ssp1 kinase, which controls G2/M transition and response to stress, is the putative CaMKK. Ssp1 has a CaM binding domain (CBD) and associates with 14-3-3 proteins as mammalian CaMKK does. Temperature-sensitive ssp1 mutants isolated are defective in the tolerance to limited glucose, and this tolerance requires the conserved stretch present between the kinase domain and CBD. Sds23, multi-copy suppressor for mutants defective in type 1 phosphatase and APC/cyclosome, also suppresses the ssp1 phenotype, and is required for the tolerance to limited glucose. We demonstrate that Sds23 binds to type 2A protein phosphatases (PP2A) and PP2A-related phosphatase Ppe1, and that Sds23 inhibits Ppe1 phosphatase activity. Ssp1 and Ppe1 thus seem to antagonize in utilizing limited glucose. We also show that Ppk9 and Ssp2 are the catalytic subunits of AMPK and AMPK-related kinases, respectively, which bind to common beta-(Amk2) and gamma-(Cbs2) subunits.

  11. 8th International Conference on Solid State Physics (SSP 2004), Workshop “Mössbauer Spectroscopy of Locally Heterogeneous Systems”

    CERN Document Server

    Kadyrzhanov, K. K; SSP 2004

    2006-01-01

    This volume contains papers presented at the 8th International Conference on Solid State Physics (SSP 2004), Workshop "Mössbauer Spectroscopy of Locally Heterogeneous Systems", held in Almaty, Kazakhstan, 23–26 August 2004. It should be of interest to researchers and PhD students working or interested in recent results in the locally inhomogeneous system investigations by Mössbauer Spectroscopy and the new concepts of data evaluation of complex Mössbauer spectra.

  12. Axenically culturing the bryophytes: A case study of the liverwort Marchantia polymorpha L. ssp. ruderalis Bischl. & Boisselier (Marchantiophyta, Marchantiaceae)

    OpenAIRE

    Vujičić, Milorad; Cvetić, Tijana; Sabovljević, Aneta; Sabovljević, Marko; id_orcid 0000-0001-5809-0406

    2010-01-01

    Axenic culture of Marchantia polymorpha ssp. ruderalis were establish from the gemmae. The most appropariate condition of culturing were searched concerning mineral nutrition, light and temperature with other invariable conditions. The best material to start aseptic in vitro culture were to use gemmae and to use commercial bleach for surface sterilization (7%). The fully developed plants developed in long day condition at mild temperature 18-20°C and high humidity. The best biomass yields wer...

  13. Influence of different strains of Agrobacterium rhizogenes on induction of hairy roots and lignan production in Linum tauricum ssp. tauricum

    Directory of Open Access Journals (Sweden)

    Iliana Ionkova

    2009-01-01

    Full Text Available Hairy root cultures were induced from leaf explants of Linum tauricum ssp. Tauricum by infection with Agrobacterium rhizogenes. Different bacterial strains of Agrobacterium rhizogenes - TR 105 and ATCC 15834 were evaluated for induction of transformed hairy roots in Linum tauricum ssp. Tauricum. These different strains varied in their virulence for induction of hairy roots in this species. Acetosyringon in cultivation medium was used to increase of frequency of hairy root induction. Growth kinetics of transgenic roots indicated a similar pattern of growth, with maximum growth occurring between 17 and 20 days. The transformed nature of tissue was confirmed by the production of opines. The lignin production of different clones was found to be growth-related. The cultures produced to 2.6% of the lignin 4′-demethyl-6-methoxypodophylotoxin (4′-DM-MPTOX and to 3.5% of the lignin 6-methoxypodophyllotoxin (6MPTOX on a dry weight basis, which was 10 to 12 times higher than in Linum tauricum ssp. Tauricum cell suspensions. Transformed cultures showed significant differences in lignin content. The highest amount of 4′-DM-MPTOX and MPTOX was found in transformed line induced by strain ATCC 15834. Rapidly growing root lines were selected to increase the efficiency of he production of lignans.

  14. Two Novel Alliin Lyase (Alliinase Genes from Twisted-Leaf Garlic (Allium obliquum and Mountain Garlic (Allium senescens ssp. montanum

    Directory of Open Access Journals (Sweden)

    Nicolae DRAGOŞ

    2011-11-01

    Full Text Available Alliinase (Alliin lyase EC 4.4.1.4, a pyridoxal phosphate-dependent lyase, represents one of the major protein components of Allium species. The enzyme is a homodimeric glycoprotein and catalyzes the synthesis of allicin (diallyl thiosulfinate, a biologically active compound, pyruvate, and ammonia starting from the specific non-protein sulfur-containing amino acid alliin ((+S-allyl-L-cysteine sulfoxide. Using newly developed specific primers two new alliinase genes from Allium obliquum and Allium senescens ssp. montanum were amplified and sequenced, as well as their homologs, from Allium fistulosum and Allium schoenoprasum. The G+C content of the alliinase region ranges between that of other dicot plants and that reported in monocot cereal plants, in all four species. Investigations of gene expression revealed a significantly higher enzyme expression level in bulbs than in leaves in all four taxa. The deduced alliinase sequences displayed a high variability among different species, since the lowest sequence similarity was found to be 55.5% between Allium senescens ssp. montanum and Allium cepa, while the highest similarity is 77.5%, between Allium senescens ssp. montanum and Allium fistulosum. Leucine is the most common amino acid in all four alliinases, while cysteine is also more frequent than in other enzymes, suggesting a high stability of the molecules due to the possible disulfide bonds.

  15. Accumulation of biologically active furanocoumarins in agitated cultures of Ruta graveolens L. and Ruta graveolens ssp. divaricata (Tenore) Gams.

    Science.gov (United States)

    Ekiert, H; Czygan, F-Ch

    2005-08-01

    This study was designed to investigate the dynamics of accumulation of linear furanocoumarins (psoralen, bergapten, xanthotoxin, isopimpinellin, imperatorin) and their biogenetic precursor, umbelliferone, in agitated cultures of Ruta graveolens L. and Ruta graveolens ssp. divaricata (Tenore) Gams during 6-week growth cycles. The metabolites under study were almost exclusively accumulated in the cultured biomass. The total content of all metabolites increased 4.8- and 2.0-fold, in R. graveolens and R. graveolens ssp. divaricata cultures, respectively. Xanthotoxin and bergapten, which are the most important therapeutic compounds, were the dominating metabolites in cultures of both plants. The maximum content of xanthotoxin (25.0 mg/100 g dry wt.) and bergapten (18.4 mg/100 g dry wt) and the maximum content of all metabolites (64.0 mg/100 g dry wt) in R. graveolens ssp. divaricata callus obtained on the 35th culture day were relatively low. However, maximum contents of xanthotoxin (136.8 mg/100 g dry wt), bergapten (210.4 mg/100 g dry wt.) and isopimpinellin (96.7 mg/100 g dry wt), and total content of all metabolites in R. graveolens shoots (520.8 mg/100 g dry wt) obtained on the 42nd culture day are interesting from a practical point of view.

  16. Early Ovule Development Following Self‐ and Cross‐pollinations in Eucalyptus globulus Labill. ssp. globulus

    Science.gov (United States)

    POUND, L. M.; WALLWORK, M. A. B.; POTTS, B. M.; SEDGLEY, M.

    2002-01-01

    The study was conducted to identify the self‐incompatibility mechanism in Eucalyptus globulus ssp. globulus. Controlled self‐ and cross‐pollinations were conducted on individual flowers from three mature trees that had self‐incompatibility levels of 76, 99·6 and 100 %. Flowers were harvested at 4, 6 and 8 weeks after pollination. Embryology was investigated by bright field microscopy on material harvested at 4 and 6 weeks after pollination. Fertilization had taken place at 4 weeks after pollination with zygotes and free nuclear endosperm visible. There was a greater proportion of healthy, fertilized ovules in the cross‐ compared with the self‐pollination treatment, and approx. half the ovules examined from both pollen treatments were not fertilized or were degenerating. By 6 weeks after pollination a few zygotes were starting to divide. The number of healthy, fertilized ovules was still greater in the cross‐pollination treatment, but the number of healthy fertilized ovules was lower in both treatments compared with 4 weeks after pollination, and many ovules were degenerating. Fertilized ovules were significantly larger than non‐fertilized or degenerating ovules and this difference was detectable by eye at 6 and 8 weeks after pollination. The mechanism of self‐incompatibility appears to have both late pre‐ and post‐zygotic components. PMID:12099536

  17. Allee effects within small populations of Aconitum napellus ssp. lusitanicum, a protected subspecies in northern France.

    Science.gov (United States)

    Le Cadre, Solenn; Tully, Thomas; Mazer, Susan J; Ferdy, Jean-Baptiste; Moret, Jacques; Machon, Nathalie

    2008-01-01

    Plants growing at low density can suffer from Allee effects as a result of pollen limitation. Previous studies of Allee effects have focused on the effects of variation among populations in size or density on reproduction. Here, the effects of plant distribution within populations on fitness components are explored in a rare plant, Aconitum napellus ssp. lusitanicum, and ecological and genetic mechanisms underlying these effects are identified. To detect pollen limitation, seed production was compared under natural versus hand-supplemented pollinations on inflorescences of different sizes in natural patches differing both in flower density and in isolation from other patches. Germination rate and juvenile survival of seeds produced in low- and high-density patches were also compared. Pollen-supplemented flowers always produced more seeds than open-pollinated flowers, especially among small plants and plants growing at low density. Offspring produced in low-density patches exhibited lower fitness that those produced in high-density patches. This could have been caused by post-fertilization mechanisms, including inbreeding depression or differential maternal resource allocation. These results show that Allee effects on fitness components (ecological and genetic Allee effects) occur within A. napellus populations at different spatial scales. The spatial distribution of plants seems to be a crucial factor affecting reproductive output and fitness.

  18. FurA contributes to the oxidative stress response regulation of Mycobacterium avium ssp. paratuberculosis.

    Science.gov (United States)

    Eckelt, Elke; Meißner, Thorsten; Meens, Jochen; Laarmann, Kristin; Nerlich, Andreas; Jarek, Michael; Weiss, Siegfried; Gerlach, Gerald-F; Goethe, Ralph

    2015-01-01

    The ferric uptake regulator A (FurA) is known to be involved in iron homeostasis and stress response in many bacteria. In mycobacteria the precise role of FurA is still unclear. In the presented study, we addressed the functional role of FurA in the ruminant pathogen Mycobacterium avium ssp. paratuberculosis (MAP) by construction of a furA deletion strain (MAPΔfurA). RNA deep sequencing revealed that the FurA regulon consists of repressed and activated genes associated to stress response or intracellular survival. Not a single gene related to metal homeostasis was affected by furA deletion. A decisive role of FurA during intracellular survival in macrophages was shown by significantly enhanced survival of MAPΔfurA compared to the wildtype, indicating that a principal task of mycobacterial FurA is oxidative stress response regulation in macrophages. This resistance was not associated with altered survival of mice after long term infection with MAP. Our results demonstrate for the first time, that mycobacterial FurA is not involved in the regulation of iron homeostasis. However, they provide strong evidence that FurA contributes to intracellular survival as an oxidative stress sensing regulator.

  19. Internalization-dependent recognition of Mycobacterium avium ssp. paratuberculosis by intestinal epithelial cells.

    Science.gov (United States)

    Pott, Johanna; Basler, Tina; Duerr, Claudia U; Rohde, Manfred; Goethe, Ralph; Hornef, Mathias W

    2009-12-01

    Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of Johne's disease, a highly prevalent chronic intestinal infection in domestic and wildlife ruminants. The microbial pathogenesis of MAP infection has attracted additional attention due to an association with the human enteric inflammatory Crohn's disease. MAP is acquired by the faecal-oral route prompting us to study the interaction with differentiated intestinal epithelial cells. MAP was rapidly internalized and accumulated in a late endosomal compartment. In contrast to other opportunistic mycobacteria or M. bovis, MAP induced significant epithelial activation as indicated by a NF-kappaB-independent but Erk-dependent chemokine secretion. Surprisingly, MAP-induced chemokine production was completely internalization-dependent as inhibition of Rac-dependent bacterial uptake abolished epithelial activation. In accordance, innate immune recognition of MAP by differentiated intestinal epithelial cells occurred through the intracellularly localized pattern recognition receptors toll-like receptor 9 and NOD1 with signal transduction via the adaptor molecules MyD88 and RIP2. The internalization-dependent innate immune activation of intestinal epithelial cells is in contrast to the stimulation of professional phagocytes by extracellular bacterial constituents and might significantly contribute to the histopathological changes observed during enteric MAP infection.

  20. The complete chloroplast genome sequence of sugar beet (Beta vulgaris ssp. vulgaris).

    Science.gov (United States)

    Li, Han; Cao, Hua; Cai, Yan-Fei; Wang, Ji-Hua; Qu, Su-Ping; Huang, Xing-Qi

    2014-06-01

    The complete nucleotide sequence of the sugar beet (Beta vulgaris ssp. vulgaris) chloroplast genome (cpDNA) was determined in this study. The cpDNA was 149,637 bp in length, containing a pair of 24,439 bp inverted repeat regions (IR), which were separated by small and large single copy regions (SSC and LSC) of 17,701 and 83,057 bp, respectively. 53.4% of the sugar beet cpDNA consisted of gene coding regions (protein coding and RNA genes). The gene content and relative positions of 113 individual genes (79 protein encoding genes, 30 tRNA genes, 4 rRNA genes) were almost identical to those of tobacco cpDNA. The overall AT contents of the sugar beet cpDNA were 63.6% and in the LSC, SSC and IR regions were 65.9%, 70.8% and 57.8%, respectively. Fifteen genes contained one intron, while three genes had two introns.

  1. Larvicidal Activity of Centaurea bruguierana ssp. belangerana Against Anopheles stephensi Larvae.

    Science.gov (United States)

    Khanavi, Mahnaz; Rajabi, Afsaneh; Behzad, Masoud; Hadjiakhoondi, Abbas; Vatandoost, Hassan; Abaee, Mohammad Reza

    2011-01-01

    In this study, the total 80% of MeOH extract and also petroleum ether, CHCl3, EtOAc, n-BuOH, and the remaining MeOH fractions obtained by solvent-solvent fractionation of the whole flowering samples of Centaurea bruguierana (DC.) Hand.-Mzt. ssp. belangerana (DC.) Bornm. (Asteraceae), namely "Baad-Avard", collected from Borazjan in Bushehr Province (Bushehr, Iran) were investigated for larvicidal activity against malaria vector, Anopheles stephensi Liston, according to WHO methods. The mortality rate of total extract and petroleum ether fraction in concentration of 40 ppm were 28% and 86% respectively and the other fractions were inactive. The probit regression analysis for the dose-response to petroleum ether fraction treatment of larvae exhibited the LC50 and LC90 values of 15.7 ppm and 48.3 ppm, respectively. As results showed, the larvicidal activity of the petroleum ether fraction would be due to the nonpolar compounds in the plant which further isolation and purification would obtain the more active compounds in lower concentrations useful for preparation of biological insecticides.

  2. Urease inhibitory profile of extracts and chemical constituents of Pistacia atlantica ssp. cabulica Stocks.

    Science.gov (United States)

    Uddin, Ghias; Ismail; Rauf, Abdur; Raza, Muslim; Khan, Haroon; Nasruddin; Khan, Majid; Farooq, Umar; Khan, Ajmal; Arifullah

    2016-06-01

    The current study was designed to evaluate the urease inhibitory profile of extract and fractions of Pistacia atlantica ssp. cabulica Stocks followed by bioactivity-guided isolated compounds. The crude extract was found significantly active with urease inhibitor (95.40% at 0.2 mg/mL) with IC50 values of 32.0 ± 0.28 μg/mL. Upon fractionation, ethyl acetate fraction displayed 100% urease inhibition with IC50 values of 19.9 ± 0.51 μg/mL at 0.2 mg/mL. However, n-hexane and chloroform fractions exhibited insignificant urease inhibition. Similarly, the isolated compound, transilitin (1) and dihydro luteolin (2) demonstrated marked urease attenuation with 95 and 98% respectively, at 0.15 mg/mL. Both the isolated compounds showed marked potency with IC50 values of 8.54 ± 0.54 and 9.58 ± 2.22 μg/mL, respectively. In short, both the extract and fractions and isolated compounds showed marked urease inhibition and thus a useful natural source of urease inhibition.

  3. Influence of mowing Artemisia tridentata ssp. wyomingensis on winter habitat for wildlife.

    Science.gov (United States)

    Davies, Kirk W; Bates, Jonathan D; Johnson, Dustin D; Nafus, Aleta M

    2009-07-01

    Mowing is commonly implemented to Artemisia tridentata ssp. wyomingensis (Beetle & A. Young) S.L. Welsh (Wyoming big sagebrush) plant communities to improve wildlife habitat, increase forage production for livestock, and create fuel breaks for fire suppression. However, information detailing the influence of mowing on winter habitat for wildlife is lacking. This information is crucial because many wildlife species depended on A. tridentata spp. wyomingensis plant communities for winter habitat and consume significant quantities of Artemisia during this time. Furthermore, information is generally limited describing the recovery of A. tridentata spp. wyomingensis to mowing and the impacts of mowing on stand structure. Stand characteristics and Artemisia leaf tissue crude protein (CP), acid detergent fiber (ADF), and neutral detergent fiber (NDF) concentrations were measured in midwinter on 0-, 2-, 4-, and 6-year-old fall-applied mechanical (mowed at 20 cm height) treatments and compared to adjacent untreated (control) areas. Mowing compared to the control decreased Artemisia cover, density, canopy volume, canopy elliptical area, and height (P plant communities slightly increases the nutritional quality of Artemisia leaves (P winter habitat. Considering the decline in A. tridentata spp. wyomingensis-dominated landscapes, we caution against mowing these communities.

  4. Immunostimulatory oligonucleotide, CpG-like motif exists in Lactobacillus delbrueckii ssp. bulgaricus NIAI B6.

    Science.gov (United States)

    Kitazawa, Haruki; Watanabe, Hiroshi; Shimosato, Takeshi; Kawai, Yasushi; Itoh, Takatoshi; Saito, Tadao

    2003-08-15

    The present study was conducted to find an immunostimulatory oligonucleotide derived from yogurt starter cultures. The chromosomal DNA was purified from nine strains of Lactobacillus delbrueckii ssp. bulgaricus and six strains of Streptococcus thermophilus. An immunostimulatory ability of the DNA was examined in a proliferation of peyer's patch and splenic B cells. Only the DNA from L. bulgaricus NIAI B6 induced a significant proliferation of both cells. When the DNA was cloned and amplified using PCR, the mitogenic activities to B cells were significantly increased by 13 of 135 DNA clones. Ten homologous nucleotide sequences were found as possible oligonucleotide sequences of mitogens, and were then chemically synthesized (sOL-LB1 to sOL-LB10). One CpG-like motif (sOL-LB7; 5'-CGGCACGCTCACGATTCTTG-3') was identified as an immunostimulatory oligonucleotide, but it did not contain palindromic CpG structure known as a B cell-specific mitogen. The sOL-LB7 substantially bound to B cells and increased the CD69 positive cells in peyer's patch cells. This study demonstrated that L. bulgaricus NIAI B6 was a good candidate of a starter culture for the production of new functional foods, "Bio-Defense Foods".

  5. Isolation and characterization of Lactobacillus delbrueckii ssp. bulgaricus and Streptococcus thermophilus from plants in Bulgaria.

    Science.gov (United States)

    Michaylova, Michaela; Minkova, Svetlana; Kimura, Katsunori; Sasaki, Takashi; Isawa, Kakuhei

    2007-04-01

    One of the traditional ways of preparation of yogurt starter in Bulgaria is placing a branch of a particular plant species into boiled sheep's milk maintained at about 45 degrees C, which is further incubated until a dense coagulum is obtained. To investigate the possible origin of the yogurt starter bacteria, Lactobacillus delbrueckii ssp. bulgaricus (L. bulgaricus) and Streptococcus thermophilus (S. thermophilus), the traditional way of yogurt-starter preparation was followed. Hundreds of plant samples were collected from four regions in Bulgaria and incubated in sterile skim milk. The two target bacteria at low frequencies from the plant samples collected were successfully isolated. Phenotypic and genotypic characteristics of these bacterial isolates revealed that they were identified as L. bulgaricus and S. thermophilus. Twenty isolates of L. bulgaricus and S. thermophilus, respectively, were selected from the isolated strains and further characterized with regard to their performance in yogurt production. Organoleptic and physical properties of yogurt prepared using the isolated strains from plants were not significantly different from those prepared using commercial yogurt-starter strains. It was therefore suggested that L. bulgaricus and S. thermophilus strains widely used for commercial yogurt production could have originated from plants in Bulgaria. To our knowledge, this is the first report on the isolation and characterization of L. bulgaricus and S. thermophilus strains from plants.

  6. Improving green roofs and rail road greening systems using Bacillus subtilis and Lactobacillus ssp.

    Science.gov (United States)

    Grüneberg, H; Oschmann, C; Dunya, S; Ulrichs, C

    2006-01-01

    Aim of the present study was the improvement of existing methods for green roof and rail road greening systems using soil borne bacteria. Bacillus subtilis and Lactobacillus ssp. alone and in combination with vinasse applied to different growing substrates were tested. The substrates were brick chips, textile mats, mineral wool mats, and a commercial available substrate for the Swedish company VegTech. All four substrates were tested along an artificial rail track on the experimental station at Humboldt University Berlin, and partly on an existing rail track in Munich, Germany. Plants selected for the experiments belong to the genus Sedum, which is relatively tolerant to dry conditions. Inoculation of plants with bacteria had no effect on plant growth parameters and on coverage of different mobile bedding systems with Sedum plants. There was no significant difference between the various treatments in Munich. In both experiments, the addition of vinasse alone improved plant growth. Plant growth was significantly different on all substrates, whereas brick chips and the commercial roof soil was the best substrate. Brick chips are a cheap substrate which can be used for rail track greening. The results indicate that the quality of the substrate is the most important factor for remediation and greening of rail tracks and roof tops. The rapid growth of plants can be influenced by the application of vinasse as additional nutrient solution (potash (K) source) or nutrient enriched substrate.

  7. Growth Behavior of Phytopathogen Clavibacter michiganensis ssp. sepedonicus Treated with Selenium Biocomposites of Mushroom Origin

    Directory of Open Access Journals (Sweden)

    A.I. Perfileva

    2016-02-01

    Full Text Available The results of studying the effect of biologically obtained selenium nanocomposites on the bacterium Clavibacter michiganensis ssp. sepedonicus (Cms are presented. Cms is a Gram-positive bacterium, which causes one of the most dangerous potato diseases, ring rot. The effective alongside ecologically safe methods for combating Cms are lacking. As the agents feasible for use in this purpose, we examined the selenium nanocomposites obtained from the macrobasidiomycetes' submerged cultures. For exploring the bionanocomposites effect on Cms, the methods of agar well diffusion, the suspension turbidity measurement, and the colony-forming units count were applied. The results showed that all the nanocomposites under study lowered the bacterial suspension's absorption values compared to the reference specimen, that testified to the observation of bacteriostatic effect of the agents tested. The suppression action of nanocompostes was elucidated by means of both agar well diffusion assay and colony-forming units count. Thus, the results obtained demonstrate the occurrence of bacteriostatic and bactericidal effects of the substances under study, and favor the supposition on advisability of further research into the selenium nanocomposites as the agents for agricultural recovery from the bacterial pathogens.

  8. THE INFLUENSE OF MONOIODACETATE ON THE THERMOTOLERANCE OF Clavibacter michiganensis ssp. sepedonicus AND Saccharomyces cerevisiae

    Directory of Open Access Journals (Sweden)

    Rymareva E.V.

    2008-06-01

    Full Text Available To search the antiseptic agents capable to decontaminate the plants from pathogens the combined effect of moderate heat shock (45oC and glycolisis inhibitor monoiodoacetate (MIA on survival of potato pathogen Clavibacter michiganensis ssp. sepedonicus (Cms and yeast Saccharomyces cerevisiae was studied. Under optimal temperature cultivation (26oC MIA had no toxic effect on S. cerevisiae but decreased viability of Cms. The lethal effect of MIA significantly increased during heat treatment at 45oC. MIA in the range from 0.1 to 1 mM decreased the thermotolerance of Cms and S. cerevisiae cells in 10-10000 folds in dependence from time of treatment. A minimal concentration of MIA capable to affect the thermotolerance was 0.1 and 0.3 mM for S. cerevisiae and Cms, respectively. The effect of MIA on Cms and yeast survival during heat shock was stronger in logarithmic phase than in stationary ones.

  9. Evaluating physiological stress in Sumatran tigers (Panthera tigris ssp. sumatrae) managed in Australian zoos.

    Science.gov (United States)

    Parnell, Tempe; Narayan, Edward J; Magrath, Michael J L; Roe, Sheila; Clark, Giles; Nicolson, Vere; Martin-Vegue, Patrick; Mucci, Al; Hero, Jean-Marc

    2014-01-01

    Glucocorticoid quantification using non-invasive methods provides a powerful tool for assessing the health and welfare of wildlife in zoo-based programmes. In this study, we provide baseline data on faecal-based glucocorticoid (cortisol) monitoring of Sumatran tigers (Panthera tigris ssp. sumatrae) managed at the Melbourne Zoo in Victoria, Australia. We sampled five tigers daily for 60 days. Faecal cortisol metabolites (FCMs) in tiger faecal extracts were quantified using enzyme immunoassays that were successfully validated using parallelism and accuracy recovery checks. Two female tigers had significantly higher mean FCM levels than the two males and another female, suggesting that females may have higher FCM levels. A significant elevation was noted in the FCM levels for one female 2 days after she was darted and anaesthetized; however, the FCM levels returned to baseline levels within 3 days after the event. Comparative analysis of FCM levels of tigers sampled at Melbourne Zoo with tigers sampled earlier at two other Australian Zoos (Dreamworld Themepark and Australia Zoo) showed that FCM levels varied between zoos. Differences in the enclosure characteristics, timing of sampling, size and composition of groupings and training procedures could all contribute to this variation. Overall, we recommend the use of non-invasive sampling for the assessment of adrenocortical activity of felids managed in zoos in Australia and internationally in order to improve the welfare of these charismatic big cats.

  10. Effects of amendments on the uptake and distribution of DDT in Cucurbita pepo ssp pepo plants

    Energy Technology Data Exchange (ETDEWEB)

    Whitfield Aslund, Melissa L.; Lunney, Alissa I. [Department of Chemistry and Chemical Engineering, Royal Military College of Canada, Kingston, ON, K7K 7B4 (Canada); Rutter, Allison [School of Environmental Studies, Biosciences Complex, Queen' s University, Kingston, ON, K7L 3N6 (Canada); Zeeb, Barbara A., E-mail: zeeb-b@rmc.c [Department of Chemistry and Chemical Engineering, Royal Military College of Canada, Kingston, ON, K7K 7B4 (Canada)

    2010-02-15

    The effects of soil amendments on the phytoextraction of SIGMADDT (DDT + DDD + DDE) from soil ([SIGMADDT] approx 1500 ng/g) by a pumpkin variety of Cucurbita pepo ssp pepo were tested and the patterns of SIGMADDT storage throughout the plant shoot were examined. The soil amendments did not increase the total amount of SIGMADDT extracted into plant shoots, but new information about SIGMADDT distribution in the plants was obtained. As observed previously, the SIGMADDT concentration in plant leaves (mean 290 ng/g) was significantly lower than in plant stems (mean 2600 ng/g). Further analysis revealed that SIGMADDT composition was consistent throughout the plant shoot and that SIGMADDT concentration in leaves and stems decreased exponentially as distance from the root increased, which was previously unknown. This new information about the patterns of SIGMADDT uptake and translocation within pumpkin plants highlights the need for appropriate plant sampling strategies in future POPs phytoextraction research. - Patterns of SIGMADDT storage in a pumpkin plant are elucidated and specific surfactant and mycorrhizal soil amendments did not increase the total amount of SIGMADDT phytoextracted into plant shoots.

  11. Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

    Directory of Open Access Journals (Sweden)

    Sodergren Erica

    2008-05-01

    Full Text Available Abstract Background Syphilis spirochete Treponema pallidum ssp. pallidum remains the enigmatic pathogen, since no virulence factors have been identified and the pathogenesis of the disease is poorly understood. Increasing rates of new syphilis cases per year have been observed recently. Results The genome of the SS14 strain was sequenced to high accuracy by an oligonucleotide array strategy requiring hybridization to only three arrays (Comparative Genome Sequencing, CGS. Gaps in the resulting sequence were filled with targeted dideoxy-terminators (DDT sequencing and the sequence was confirmed by whole genome fingerprinting (WGF. When compared to the Nichols strain, 327 single nucleotide substitutions (224 transitions, 103 transversions, 14 deletions, and 18 insertions were found. On the proteome level, the highest frequency of amino acid-altering substitution polymorphisms was in novel genes, while the lowest was in housekeeping genes, as expected by their evolutionary conservation. Evidence was also found for hypervariable regions and multiple regions showing intrastrain heterogeneity in the T. pallidum chromosome. Conclusion The observed genetic changes do not have influence on the ability of Treponema pallidum to cause syphilitic infection, since both SS14 and Nichols are virulent in rabbit. However, this is the first assessment of the degree of variation between the two syphilis pathogens and paves the way for phylogenetic studies of this fascinating organism.

  12. The essential oil of the protected species: Thymus praecox ssp. penyalarensis

    Directory of Open Access Journals (Sweden)

    José Blanco Salas

    2012-03-01

    Full Text Available The essential oil of a protected Spanish species, Thymus praecox ssp. penyalarensis, was firstly analyzed [Gas Chromatography-Mass Spectrometry (GC-MS] from wild populations during the phenological stages of flowering and fruiting. In flowering, the yield was 1.2%, and the major components were identified as thymol (18.5%, p-cymene (14.6%, carvacrol (11.6%, and γ-terpinene (10.1%. In fruiting, the yield was 0.9% and the major components resulted to be p-cymene (19.0%, carvacrol (16.5%, and borneol (10.5%. An experimental cultivation of the taxa was made also in order to analyze its essential oil as well. The yield was 1.3%, and the main compounds were thymol (19.1%, p-cymene (17.0%, and γ-terpinene (12.3%. Finally, the composition of the essential oil of this plant is discussed in relation to chemotaxonomic and biogeographical aspects.

  13. RAPID HLA-DRB1 GENERIC TYPING BY PCR-SSP METHOD

    Institute of Scientific and Technical Information of China (English)

    邱长春; 赵岩; 陶贞寅; 朱席林; 徐作军; 董怡

    1995-01-01

    We report a simple and rapid HLA-DRB1 generic typing metbod,PCR-SSP,which is practical and inexpensive.We use 9 sequence-specific primers and 2 group specific primers to define the HLA-DRB1 specificities DR1,DR2,DR3,DR4,DR5,DR6,DR7,DR8,DR9 and DR10. The HLA DR3,DR5,DR6 and DR8 can be amplified by the two primers of DR3568 are positive.Any individuals can be typed with some exception: the three pairs of phenotype DR3/DR3 and DR3/DR6,DR5/DR5 and DR5/DR6, DR8/DR8 and DR8/DR6 cannot be discriminated from each other.We typed 106 unrelated healthy people from Beijing locations in two weeks.We think this typing method is suitable to replace the error-Prone serologic HLA-DR tests in routine clinical practice,including the prospective typing of cadaveric organ donors.

  14. Leaf water relations of Eucalyptus globulus ssp. globulus and E. nitens: seasonal, drought and species effects.

    Science.gov (United States)

    White, D A; Beadle, C L; Worledge, D

    1996-05-01

    In August 1990, a 2-ha plantation was established in an area where rainfall (about 515 mm year(-1)) was insufficient to meet evaporative demand. On nine occasions between September 1991 and April 1993, pressure-volume curves were constructed for irrigated and rainfed Eucalyptus globulus ssp. globulus Labill. and E. nitens (Deane and Maiden) Maiden trees. During the experiment, rainfed trees experienced six periods when predawn water potential was significantly lower than that of irrigated trees. In early spring of 1991 and 1992, osmotic potentials at full turgor and turgor loss point in the irrigated E. nitens were significantly lower than at other times of the year, probably because of winter hardening. Water stress reduced osmotic potential and increased bulk elastic modulus in E. nitens, whereas the reverse occurred in E. globulus. However, treatment differences with respect to changes in osmotic and elastic properties were commonly overshadowed by interspecific differences. These were most apparent at the end of the sixth period of water stress when osmotic potentials at full and zero turgor were significantly higher and bulk elastic modulus and relative water content at turgor loss point were significantly lower in E. globulus than in E. nitens. We conclude that the drought-tolerance responses of E. globulus make it a more suitable species than E. nitens for establishment on sites where moderate water stress is experienced.

  15. Antioxidant activity and chemical composition of Juniperus excelsa ssp. polycarpos wood extracts.

    Science.gov (United States)

    Hosseinihashemi, S K; Dadpour, A; Lashgari, A

    2017-03-01

    Extracts from the wood of Juniperus excelsa ssp. polycarpos were analysed for their antioxidant activity using the DPPH method and compared with ascorbic acid and butylated hydroxytoluene. The most active extracts were analysed for their chemical composition using gas chromatography-mass spectrometry. Acetone extract was found to be moderately active as an antioxidant agent at 58.38%, which was lower than the value of vitamin C (98.56%) at the concentration of 14.20 mg/mL. The major components identified in the acetone extract as trimethylsilyl (TMS) derivatives were pimaric acid TMS (24.56%), followed by α-d-glucopyranoside,1,3,4,6-tetrakis-O-(TMS)-β-d-fructofuranosyl 2,3,4,6-tetrakis-O-(TMS) (21.39%), triflouromethyl-bis-(TMS)methyl ketone (9.32%), and cedrol (0.72%). The dissolved water:methanol (1:1 v/v) partitioned from acetone extract afforded 12 fractions; among them, the F9 fraction was found to have good antioxidant activity (88.49%) at the concentration of 14.20 mg/mL. The major compounds identified in F9 fraction were α-d-glucopyranoside, 1,3,4,6-tetrakis-O-(TMS) (20.22%) and trifluoromethyl-bis-(TMS)methyl ketone (5.10%).

  16. Variation in Nectar Volume and Sugar Concentration of Allium ursinum L. ssp. ucrainicum in Three Habitats

    Directory of Open Access Journals (Sweden)

    Ágnes Farkas

    2012-01-01

    Full Text Available Floral nectar volume and concentration of ramson (Allium ursinum L. ssp. ucrainicum were investigated in three different habitats, including two types of sessile oak-hornbeam association on brown forest soil with clay illuviation and a silver lime-flowering ash rock forest association on rendzina. Daily nectar production ranged from 0.1 to 3.8 μL per flower with sugar concentrations of 25 to 50%. Mean nectar volumes and concentrations showed significant differences between freely exposed flowers and covered flowers, which had been isolated from flower visitors 24 h prior to nectar studies. Both the amount and quality of nectar were affected by microclimatic conditions and soil properties and varied between populations at different habitats. In the silver lime-flowering ash rock-forest association mean nectar volumes and concentrations were lower than in a typical sessile oak-hornbeam association on three occasions, the difference being significant in two cases. During full bloom, the date of sampling did not have a profound effect on either nectar volume or concentration.

  17. Antiviral and antimicrobial activities of three sesquiterpene lactones from Centaurea solstitialis L. ssp. solstitialis.

    Science.gov (United States)

    Ozçelik, Berrin; Gürbüz, Ilhan; Karaoglu, Taner; Yeşilada, Erdem

    2009-01-01

    Three sesquiterpene lactones (centaurepensin = chlorohyssopifolin A, chlorojanerin and 13-acetyl solstitialin A) isolated from the aerial parts of Centaurea solstitialis L. ssp. solstitialis (Asteraceae) were investigated for antimicrobial and antiviral activities. For the antimicrobial activity assessment, both standard and isolated strains of Escherichia coli, Pseudomonas aeruginosa, Enterococcus faecalis, Staphylococcus aureus, Candida albicans and C. parapsilosis were employed by the microdilution method. Herpes simplex type-1, a DNA virus, and Parainfluenza, an RNA virus, were employed for the determination of the antiviral activity of these three sesquiterpene lactones using Vero cell lines. Ampicilline, ofloxocine, ketoconazole, fluconazole, acyclovir and oseltamivir were used as the reference drugs. 13-Acetyl solstitialin A displayed remarkable antibacterial activity against isolated strains of E. faecalis at 1 microg/ml concentration, which was close to the effective concentrations of ampicillin. The same compound also showed significant activity against the DNA virus, being as potent as the reference compound acyclovir at maximum and minimum concentrations of 16-<0.00006 microg/ml. This is the first report showing that 13-acetyl solstitialin A possesses significant antiviral activity.

  18. Full Scale Test of SSP 34m blade, edgewise loading LTT. Data Report 1

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Magda; Jensen, Find M.; Nielsen, Per H. (and others)

    2010-01-15

    This report is a part of a research project where a 34m wind turbine blade from SSP-Technology A/S has been tested in edgewise direction (LTT). The applied load is 60% of an unrealistic extreme event, corresponding to 75% of a certificated extreme load. This report describes the background, the test set up, the tests and the results. For this project, a new solution has been used for the load application and the solution for the load application is described in this report as well. The blade has been submitted to thorough examination. More areas have been examined with DIC, both global and local deflections have been measured, and also 378 strain gauge measurements have been performed. Furthermore Acoustic Emission has been used in order to detect damage while testing new load areas. The global deflection is compared with results from a previous test and results from FEM analyses in order to validate the solution as to how the gravity load on the blade was handled. Furthermore, the DIC measurement and the displacement sensors measurements are compared in order to validate the results from the DIC measurements. The report includes the results from the test and a description of the measurement equipment and the data acquisition. (author)

  19. Identification of an HLA-A* 0201-restricted CD8+ T-cell epitope SSp-1 of SARS-CoV spike protein

    Institute of Scientific and Technical Information of China (English)

    Wang B; Yu Y; Wang X; Yang R; Cao X; Chen H; Jiang X; Zhang M; Wan T; Li N; Zhou X; Wu Y; Yang F

    2004-01-01

    A novel coronavirus, severe acute respiratory syndrome (SARS)-associated coronavirus (SARS-CoV), has been identified as the causal agent of SARS. Spike (S) protein is a major structural glycoprotein of the SARS virus and a potential target for SARS-specific cell-mediated immune responses. A panel of S protein-derived peptides was tested for their binding affinity to HLA-A * 0201 molecules. Peptides with high affinity for HLA-A * 0201 were then assessed for their capacity to elicit specific immune responses mediated by cytotoxic T lymphocytes (CTLs) both in vivo, in HLA-A2. 1/Kb transgenic mice, and in vitro, from peripheral blood lymphocytes (PBLs) harvested from healthy HLA-A2.1 + donors. SARS-CoV protein-derived peptide-1 (SSp-1 RLNEVAKNL), induced peptide-specific CTLs both in vivo (transgenic mice) and in vitro (human PBLs), which specifically released interferon-gamma (IFN-gamma) upon stimulation with SSp-1-pulsed autologous dendritic cells (DCs) or T2 cells. SSp-1-specific CTLs also lysed major histocompatibility complex (MHC)-matched tumor cell lines engineered to express S proteins. HLA-A * 0201-SSp-1 tetramer staining revealed the presence of significant populations of SSp-1-specific CTLs in SSp-1-induced CD8+ T cells. We propose that the newly identified epitope SSp-1 will help in the characterization of virus control mechanisms and immunopathology in SARS-CoV infection, and may be relevant to the development of immunotherapeutic approaches for SARS.

  20. Ontogenetic differences in mesophyll structure and chlorophyll distribution in Eucalyptus globulus ssp. globulus.

    Science.gov (United States)

    James, S A; Smith, W K; Vogelmann, T C

    1999-02-01

    Mesophyll structure has been associated with the photosynthetic performance of leaves via the regulation of internal light and CO(2) profiles. Differences in mesophyll structure and chlorophyll distribution within three ontogenetically different leaf types of Eucalyptus globulus ssp. globulus were investigated. Juvenile leaves are blue-grey in color, dorsiventral (adaxial palisade layer only), hypostomatous, and approximately horizontal in orientation. In contrast, adult leaves are dark green in color, isobilateral (adaxial and abaxial palisade), amphistomatous, and nearly vertical in orientation. The transitional leaf type has structural features that appear intermediate between the juvenile and adult leaves. The ratio of mesophyll cell surface area per unit leaf surface area (A(mes)/A) of juvenile leaves was maximum at the base of a single, adaxial palisade layer and declined through the spongy mesophyll. Chlorophyll a + b content showed a coincident pattern, while the chlorophyll a:b ratio declined linearly from the adaxial to abaxial epidermis. In comparison, the mesophyll of adult leaves had a bimodal distribution of A(mes)/A, with maxima occurring beneath both the adaxial and abaxial surfaces within the first layer of multiple palisade layers. The distribution of chlorophyll a + b content had a similar pattern, although the maximum ratio of chlorophyll a:b occurred immediately beneath the adaxial and abaxial epidermis. The matching distributions of A(mes)/A and chlorophyll provide further evidence that mesophyll structure may act to influence photosynthetic performance. These changes in internal leaf structure at different life stages of E. globulus may be an adaptation for increased xeromorphy under increasing light exposure experienced from the seedling to adult tree, similar to the characteristics reported for different species according to sunlight exposure and water availability within their native habitats.

  1. In vitro biological activity screening of Lycopodium complanatum L. ssp. chamaecyparissus (A. Br.) Doll.

    Science.gov (United States)

    Orhan, Ilkay; Ozcelik, Berrin; Aslan, Sinem; Kartal, Murat; Karaoglu, Taner; Sener, Bilge; Terzioglu, Salih; Iqbal Choudhary, M

    2009-01-01

    This article reports the results of selected biological activities, including anticholinesterase, antioxidant, antibacterial, antifungal and antiviral properties, of the petroleum ether, chloroform and methanol extracts as well as the alkaloid fraction of Lycopodium complanatum L. ssp. chamaecyparissus (A. Br.) Doll (LCC, Lycopodiaceae) growing in Turkey. Anticholinesterase effect of the extracts was tested against both acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) at concentrations of 0.2 and 1 mg mL(-1) using microplate-reader assay based on Ellman method. Antioxidant activity of the LCC extracts was evaluated by 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical-scavenging method at 0.2 mg mL(-1) using microplate-reader assay. Both DNA virus Herpes simplex (HSV) and RNA virus Parainfluenza (PI-3) were employed for antiviral assessment of LCC exracts using Madin-Darby Bovine Kidney and Vero cell lines. Antibacterial and antifungal activities of the extracts were screened against the bacteria: Escherichia coli, Pseudomonas aeruginosa, Proteus mirabilis, Acinobacter baumannii, Klebsiella pneumoniae, Staphylococcus aureus, Bacillus subtilis as well as the fungi: Candida albicans and C. parapsilosis. Only the petroleum ether extract of LCC possessed remarkable activity against both AChE and BChE at 1 mg mL(-1) (76.5 and 69.6%, respectively), whereas LCC extracts showed low free radical-scavenging activity. All of the extracts were found to be more effective against the ATCC strains than isolated ones, particularly S. aureus, while the extracts had moderate antifungal activity. On the other hand, we found that only the petroleum ether extract was active against HSV. In addition, we also analysed the content of the alkaloid fraction of the plant by capillary gas chromatography-mass spectrometry (GC-MS) and identified lycopodine as the major alkaloid (60.8%).

  2. Systemic and mucosal immune reactivity upon Mycobacterium avium ssp. paratuberculosis infection in mice.

    Science.gov (United States)

    Koc, Arzu; Bargen, Imke; Suwandi, Abdulhadi; Roderfeld, Martin; Tschuschner, Annette; Rath, Timo; Gerlach, Gerald F; Hornef, Mathias; Goethe, Ralph; Weiss, Siegfried; Roeb, Elke

    2014-01-01

    Mycobacterium avium ssp. paratuberculosis (MAP) is the cause of Johne's disease, an inflammatory bowel disorder of ruminants. Due to the similar pathology, MAP was also suggested to cause Crohn's disease (CD). Despite of intensive research, this question is still not settled, possibly due to the lack of versatile mouse models. The aim of this study was to identify basic immunologic mechanisms in response to MAP infection. Immune compromised C57BL/6 Rag2-/- mice were infected with MAP intraperitoneally. Such chronically infected mice were then reconstituted with CD4+ and CD8+ T cells 28 days after infection. A systemic inflammatory response, detected as enlargement of the spleen and granuloma formation in the liver, was observed in mice infected and reconstituted with CD4+ T cells. Whereby inflammation in infected and CD4+CD45RB(hi) T cell reconstituted animals was always higher than in the other groups. Reconstitution of infected animals with CD8+ T cells did not result in any inflammatory signs. Interestingly, various markers of inflammation were strongly up-regulated in the colon of infected mice reconstituted with CD4+CD45RB(lo/int) T cells. We propose, the usual non-colitogenic CD4+CD45RB(lo/int) T cells were converted into inflammatory T cells by the interaction with MAP. However, the power of such cells might be not sufficient for a fully established inflammatory response in the colon. Nevertheless, our model system appears to mirror aspects of an inflammatory bowel disease (IBD) like CD and Johne's diseases. Thus, it will provide an experimental platform on which further knowledge on IBD and the involvement of MAP in the induction of CD could be acquired.

  3. Systemic and mucosal immune reactivity upon Mycobacterium avium ssp. paratuberculosis infection in mice.

    Directory of Open Access Journals (Sweden)

    Arzu Koc

    Full Text Available Mycobacterium avium ssp. paratuberculosis (MAP is the cause of Johne's disease, an inflammatory bowel disorder of ruminants. Due to the similar pathology, MAP was also suggested to cause Crohn's disease (CD. Despite of intensive research, this question is still not settled, possibly due to the lack of versatile mouse models. The aim of this study was to identify basic immunologic mechanisms in response to MAP infection. Immune compromised C57BL/6 Rag2-/- mice were infected with MAP intraperitoneally. Such chronically infected mice were then reconstituted with CD4+ and CD8+ T cells 28 days after infection. A systemic inflammatory response, detected as enlargement of the spleen and granuloma formation in the liver, was observed in mice infected and reconstituted with CD4+ T cells. Whereby inflammation in infected and CD4+CD45RB(hi T cell reconstituted animals was always higher than in the other groups. Reconstitution of infected animals with CD8+ T cells did not result in any inflammatory signs. Interestingly, various markers of inflammation were strongly up-regulated in the colon of infected mice reconstituted with CD4+CD45RB(lo/int T cells. We propose, the usual non-colitogenic CD4+CD45RB(lo/int T cells were converted into inflammatory T cells by the interaction with MAP. However, the power of such cells might be not sufficient for a fully established inflammatory response in the colon. Nevertheless, our model system appears to mirror aspects of an inflammatory bowel disease (IBD like CD and Johne's diseases. Thus, it will provide an experimental platform on which further knowledge on IBD and the involvement of MAP in the induction of CD could be acquired.

  4. Rapid turnover of the W chromosome in geographical populations of wild silkmoths, Samia cynthia ssp.

    Science.gov (United States)

    Yoshido, Atsuo; Síchová, Jindra; Kubíčková, Svatava; Marec, František; Sahara, Ken

    2013-04-01

    Our previous studies revealed a considerably high level of chromosomal polymorphism in wild silkmoths, Samia cynthia ssp. (Lepidoptera: Saturniidae). Geographical populations of this species complex differ in chromosome numbers and show derived sex chromosome systems including Z0/ZZ in S. cynthia ricini (2n = 27/28; Vietnam), neo-Wneo-Z/neo-Zneo-Z in S. cynthia walkeri (2n = 26/26; Sapporo, Hokkaido) and neo-WZ1Z2/Z1Z1Z2Z2 in S. cynthia subsp. indet. (2n = 25/26; Nagano, Honshu). In this study, we collected specimens of S. cynthia pryeri in Japanese islands Kyushu, Shikoku and Honshu, with an ancestral-like karyotype of 2n = 28 in both sexes and a WZ/ZZ sex chromosome system, except for one population, in which females have lost the W chromosome. However, the S. cynthia pryeri W chromosome showed a very unusual morphology: It was composed of a highly heterochromatic body, which remained condensed throughout the whole cell cycle and of a euchromatin-like "tail." We examined molecular composition of the W and neo-W chromosomes in S. cynthia subspecies by comparative genomic hybridisation and fluorescence in situ hybridisation with W chromosome painting probes prepared from laser-microdissected W chromatin of S. cynthia pryeri. These methods revealed that the molecular composition of highly heterochromatic part of the S. cynthia pryeri W chromosome is very different and lacks homology in the genomes of other subspecies, whereas the euchromatin-like part of the W chromosome corresponds to a heterochromatic part of the neo-W chromosomes in S. cynthia walkeri and S. cynthia subsp. indet. Our findings suggest that the curious WZ system of S. cynthia pryeri may represent an ancestral state of the Samia species complex but do not exclude an alternative hypothesis of its derived origin.

  5. Metal extraction by Alyssum serpyllifolium ssp. lusitanicum on mine-spoil soils from Spain.

    Science.gov (United States)

    Kidd, P S; Monterroso, C

    2005-01-05

    The efficiency of Alyssum serpyllifolium ssp. lusitanicum (Brassicaceae) for use in phytoextraction of polymetallic contaminated soils was evaluated. A. serpyllifolium was grown on two mine-spoil soils (MS1 and MS2): MS1 is contaminated with Cr (283 mg kg(-1)) and MS2 is moderately contaminated with Cr (263 mg kg(-1)), Cu (264 mg kg(-1)), Pb (1433 mg kg(-1)) and Zn (377 mg kg(-1)). Soils were limed to about pH 6.0 (MS1/Ca and MS2/Ca) or limed and amended with NPK fertilisers (MS1/NPK and MS2/NPK). Biomass was reduced on MS2/Ca due to Cu phytotoxicity. Fertilisation increased biomass by 10-fold on MS1/NPK, but root growth was reduced by 7-fold compared with MS1/Ca. Plants accumulated Mn, Ni and Zn in shoots, and both metal content and transportation were generally greater in MS2 than in MS1. Zinc bioaccumulation factors (BF, shoot([metal])/soil([metal])) were significantly greater in MS2 than in MS1. However, metal yields were greatest in plants grown on MS1/NPK. Concentrations of EDTA-, NH(4)Cl- and Mehlich 3 (M3)-extractable Mn and Zn were greater after plant growth. Concentrations of M3-extractable Cr, Ni, Pb and Zn were increased at the rhizosphere. Sequential extractions showed changes in the metal distribution among different soil fractions after growth. This could reflect the buffering capacity of these soils or the plants' ability to mobilise metals from less plant-available soil pools. Results suggest that A. serpyllifolium could be suitable for phytoextraction uses in polymetallic-contaminated soils, provided Cu concentrations were not phytotoxic. However, further optimisation of growth and metal extraction are required.

  6. Differential contribution of Clavibacter michiganensis ssp. michiganensis virulence factors to systemic and local infection in tomato.

    Science.gov (United States)

    Chalupowicz, Laura; Barash, Isaac; Reuven, Michal; Dror, Orit; Sharabani, Galit; Gartemann, Karl-Heinz; Eichenlaub, Rudolf; Sessa, Guido; Manulis-Sasson, Shulamit

    2017-04-01

    Clavibacter michiganensis ssp. michiganensis (Cmm) causes substantial economic losses in tomato production worldwide. The disease symptoms observed in plants infected systemically by Cmm are wilting and canker on the stem, whereas blister-like spots develop in locally infected leaves. A wide repertoire of serine proteases and cell wall-degrading enzymes has been implicated in the development of wilt and canker symptoms. However, virulence factors involved in the formation of blister-like spots, which play an important role in Cmm secondary spread in tomato nurseries, are largely unknown. Here, we demonstrate that Cmm virulence factors play different roles during blister formation relative to wilting. Inoculation with a green fluorescent protein (GFP)-labelled Cmm382 indicates that penetration occurs mainly through trichomes. When spray inoculated on tomato leaves, the wild-type Cmm382 and Cmm100 (lacking plasmids pCM1 and pCM2) strains form blister-like spots on leaves, whereas Cmm27 (lacking the chp/tomA pathogenicity island) is non-pathogenic, indicating that plasmid-borne genes, which have a crucial role in wilting, are not required for blister formation. Conversely, mutations in chromosomal genes encoding serine proteases (chpC and sbtA), cell wall-degrading enzymes (pgaA and endX/Y), a transcriptional regulator (vatr2), a putative perforin (perF) and a putative sortase (srtA) significantly affect disease incidence and the severity of blister formation. The transcript levels of these genes, as measured by quantitative reverse transcription-polymerase chain reaction, showed that, during blister formation, they are expressed early at 8-16 h after inoculation, whereas, during wilting, they are expressed after 24-72 h or expressed at low levels. Plant gene expression studies suggest that chpC is involved in the suppression of host defence. © 2016 BSPP AND JOHN WILEY & SONS LTD.

  7. [Effects of ruta SSP on the activity of the smooth gastrointestinal muscle isolated of rat].

    Science.gov (United States)

    Grigorjev, Carlota A; Brizuela, Nilda Y

    2010-01-01

    Ruta graveolens L. and Ruta chalepensis L. are plants used in folkloric medicine as antispasmodics, digestive and for intestinal gases. Animals used as experimental model were rats of the Wistar line, adult females, clinically healthy and with a weight average of 250 grams. We used strips of stomach and duodenum. Each one of the segments mounted on two stirrups in a bath of organ isolated with Ringer-lactate solution, at 37° C , pH: 7.3-7.4, and bubbled with 95% O2, 5% CO2. One of the stirrups was connected vertically to the bottom of the bath and the other to a transducer of tension connected to a Beckman polygraph. We applied 500 mgs of basal tension. After the stabilization, the ethanolic extract of Ruta ssp was added in increasing doses. At 50μl/ml the tone lower 23% in small intestine and lower 27% in stomach. However at 100 μl/ml the tone lower 32% and 35% respectively. In the other parameters the amplitude decrease 50% in the stomach at dose of 5 μl/ml while in the small intestine the amplitude lower 60%. With 10 μl/ml the amplitude change in both organs ( 96% in small intestine, and 75% in stomach). The frequency changes in both organs ( 32% in small intestine, and 50% in stomach) at 10 μl/ml Rue showed decreased effects on isolated small intestine and stomach were is dose dependent, maybe we were demonstrated the effects digestive of Ruta.

  8. A draft sequence of the rice(Oryza sativa ssp. indica) genome

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a "whole genome shotgun" approach, we have produced a draft rice genome sequence of Oryza sativa ssp. indica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEM- BLER, a custom-designed software package used for the initial assembly, were verified rigorously by comparisons against finished BAC clone sequences from both indica and japanica strains, available from the public databases. Over all, 96.3% of full-length cDNAs, 96.4% of STS, STR, RFLP markers, 94.0% of ESTs and 94.9% unigene clusters were identified from the draft sequence. Our preliminary analysis on the data set shows that our rice draft sequence is consistent with the comman standard accepted by the genome sequencing community. The unconditional release of the draft to the public also undoubtedly provides a fundamental resource to the international scientific communities to facilitate genomic and genetic studies on rice biology.

  9. The hydraulic architecture of Juniperus communis L. ssp. communis: shrubs and trees compared.

    Science.gov (United States)

    Beikircher, Barbara; Mayr, Stefan

    2008-11-01

    Juniperus communis ssp. communis can grow like a shrub or it can develop a tree-like habit. In this study, the hydraulic architecture of these contrasting growth forms was compared. We analysed the hydraulic efficiency (leaf-specific conductivity, k(l); specific conductivity, k(s); Huber value, HV) and the vulnerability to cavitation (the water potential corresponding to a 50% loss of conductivity, Psi(50)), as well as anatomical parameters [mean tracheid diameter, d; mean hydraulic diameter, d(h); cell wall reinforcement (t/b)(h)(2)] of shrub shoots, tree stems and tree branches. Shrub shoots were similar to tree branches (especially to lower branches) in growth form and conductivity (k(l) = 1.93 +/- 0.11 m(2) s(-1) MPa(-1) 10(-7), k(s) = 5.71 +/- 0.19 m(2) s(-1) MPa(-1) 10(-4)), but were similar to tree stems in their vulnerability to cavitation (Psi(50) = -5.81 +/- 0.08 MPa). Tree stems showed extraordinarily high k(l) and k(s) values, and HV increased from the base up. Stem xylem was more vulnerable to cavitation than branch xylem, where Psi(50) increased from lower (Psi(50) = -6.44 +/- 0.19 MPa) to upper branches (Psi(50) = -5.98 +/- 0.13 MPa). Conduit diameters were correlated with k(l) and k(s). Data indicate that differences in hydraulic architecture correspond to changes in growth form. In some aspects, the xylem hydraulics of tree-like Juniperus communis differs from that of other coniferous tree species.

  10. Khorasan wheat population researching (Triticum turgidum, ssp. Turanicum (McKey in the minimum tillage conditions

    Directory of Open Access Journals (Sweden)

    Ikanović Jela

    2014-01-01

    Full Text Available Khorasan wheat occupies a special place in the group of new-old cereals (Triticum turgidum, ssp. Turanicum McKey. It is an ancient species, native to eastern Persia, that is very close to durum wheat by morphological characteristics. Investigations were carried out in agro ecological conditions of the eastern Srem, with two wheat populations with dark and bright awns as objects of study. The following morphological and productive characteristics were investigated: plant height (PH, spike length (SH, number of spikelets per spike (NSS, absolute weight (AW and grain weight per spike (GW, seed germination (G and grains yield (YG. Field micro-experiments were set on the carbonate chernozem soil type on loess plateau in 2011 and 2012. Hand wheat sowing was conducted in early March with drill row spacing of 12 cm. The experiment was established as complete randomized block system with four replications. Tending crops measures were not applied during the growing season. Plants were grown without usage of NPK mineral nutrients. Chemical crop protection measures were not applied, although powdery mildew (Erysiphe graminis was appeared before plants spike formation in a small extent. The results showed that both populations have a genetic yield potential. In general, both populations manifested a satisfactory tolerance on lodging and there was no seed dispersal. Plants from bright awns population were higher, had longer spikes and larger number of spikelet’s per spike. However, plants from dark awns population had higher absolute weight and grains weight per spike, as well as grain yield per plant. Strong correlation connections were identified among the investigated characteristics. The determination of correlations, as well as direct and indirect affects, enabled easier understanding of the mutual relationships and their balancing in order to improve the yield per unit area. [Projekat Ministarstva nauke Republike Srbije, br. TR 31078 i br. TR 31022

  11. Starch-bound 2S proteins and kernel texture in einkorn, Triticum monococcum ssp monococcum.

    Science.gov (United States)

    Taddei, Federica; Gazza, Laura; Conti, Salvatore; Muccilli, Vera; Foti, Salvatore; Pogna, Norberto Edgar

    2009-11-01

    The starch granule proteins from 113 einkorn wheat (Triticum monococcum ssp monococcum) accessions were analyzed by acidic, polyacrylamide gel electrophoresis (A-PAGE), and two-dimensional A-PAGE x SDS-PAGE. All accessions were confirmed to contain equal amounts of two polypeptide chains corresponding to puroindoline B (Pin-B), as well as a prominent component plus a faint band corresponding to puroindoline A (Pin-A). When compared with soft-textured common wheat, "monococcum" accessions showed an increase of 3.2- and 2.7-fold in Pin-A and Pin-B levels on the starch granules, respectively. In addition, all accessions contained a novel component of the 2S super-family of seed proteins named Einkorn Trypsin Inhibitor (ETI), which was found to be encoded as a pre-protein 148 residues long. Wild-type ETI encoded by allele Eti-A(m) 1a and "valine-type" ETI encoded by allele Eti-A(m) 1b, which occurred in 107 and six einkorn accessions, respectively, were found to accumulate on starch granules as a mature protein of 121 amino acids with a hydrophobic central domain. The einkorn accessions exhibited an average SKCS index as low as -2.05 +/- 11.4, which is typical of extra-soft kernels. The total surface area of starch granules in "monococcum" wheat, as determined by visual assessments in counting chambers, was estimated at 764 mm(2)/mg of starch, and was about 1.5 times higher than that for common wheat. The results are discussed in relation to the identification of factors that cause the extra-soft texture of einkorn kernels.

  12. Evaluation of the wood CCA preservative treatment process of Eucalyptus (Eucaliptus ssp) by X-ray fluorescence technique

    Energy Technology Data Exchange (ETDEWEB)

    Pereira Junior, Sergio Matias, E-mail: matias@ipt.br [Instituto de Pesquisas Tecnologicas (IPT), Sao Paulo, SP (Brazil); Salvador, Vera Lucia Ribeiro; Sato, Ivone Mulako, E-mail: imsato@ipen.br [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)

    2013-07-01

    Brazil produces around 1,2 mi m{sup 3} of treated wood to meet the annual demand of railway, electric, rural and construction sectors. The treated woods used for poles, sleepers, fence posts and plywoods should be according to Brazilian norms requirements. The most used wood species are eucalyptus (Eucaliptus ssp)and pine (Pinus ssp). The most wood preservative products used in Brazil are CCA (Chromated Copper Arsenate) and CCB (Copper Chromium and Boron Salt). The analytical methods, such as Flame Atomic Absorption Spectrometry (FAAS) and Plasma Inductively Coupled Optical Emission Spectrometry (ICPOES) have been used for the evaluation of those treatment processes. In this work, the sapwood sample was obtained from eucalyptus trees (Eucaliptus ssp) obtained from Minas Gerais State, Brazil, cut plantation areas. Sawdust sapwood sample was grounded and submitted to different additions of CCA solutions (0.2, 0.7, 1.3, 2.3, 3.6, 6.3, 11.7and17.9 kg m{sup -3}). Power and pressed pellets sapwood samples, analyzed by EDXRFS, showed a good linear relation (r{sup 2}>0.99) between the characteristic intensity fluorescent lines (CuΚα, CrΚαand AsΚΒ) and their concentration, also, showed adequate sensitivity (LQ < 5mgkg{sup -1}) for Cu, Cr and As determination in treated woods. Cu, Cr and As were determined in powdered sawdust samples by FAA spectrometry, using the AWPA A11-93 standard method; the relation between the CCA retention and their concentration showed a lower linear relation than EDXRFS; the FAAS spreading result could be attributed to laboratorial CCA addition process. (author)

  13. GenBank blastn search result: AK064582 [KOME

    Lifescience Database Archive (English)

    Full Text Available AK064582 002-112-F03 AY061993.1 Daucus carota ATP synthase subunit 8 (atp8-1) gene, complete cds; atp...9 and atp9/atp6 pseudogenes, complete sequence; mitochondrial genes for mitochondrial products.|PLN PLN 2e-21 Plus Plus ...

  14. Final Environmental Assessment: Proposed Laser-Firing Tank Range and Artillery Maneuver Area Arnold Air Force Base Tullahoma Tennessee

    Science.gov (United States)

    2005-03-01

    hispidus* hairy jointgrass Significant Bromus japonicus Japanese bromegrass Significant Bromus secalinus Rye brome Significant Carduus nutans Musk ... thistle Significant Clematis ternifolia Leatherleaf clematis Significant Coronilla varia Crown vetch Significant Daucus carota Queen Anne’s-lace...eliminated. Procedures would include identification and use of areas for maneuvers that would be least likely to be disturbed by vehicular traffic, as well

  15. Survey of 'Candidatus Liberibacter solanacearum' in carrot crops affected by the psyllid Trioza apicalis (Hemiptera: Triozidae) in Norway

    Science.gov (United States)

    The carrot psyllid Trioza apicalis Förster (Hemiptera: Triozidae) is a serious insect pest of carrot (Daucus carota L.) in northern Europe, where it can cause up to 100% crop loss. Although it was long believed that T. apicalis causes damage to carrot by injection of toxins into the plant, it was re...

  16. First report of 'Candidatus Liberibacter solanacearum' associated with psyllid-affected carrots in Norway

    Science.gov (United States)

    Carrot (Daucus carota) plants with symptoms resembling those associated with the carrot psyllid Trioza apicalis and the bacterium “Candidatus Liberibacter solanacearum” were observed in 70-80% of commercial fields and experimental plots in southeastern Norway from late July to mid-September 2011; al...

  17. Enzymatic evidence for the key role of arginine in nitrogen translocation by arbuscular mycorrhiza fungi

    DEFF Research Database (Denmark)

    Cruz, C.; Egsgaard, Helge; Trujillo, C.

    2007-01-01

    Key enzymes of the urea cycle and N-15-labeling patterns of arginine (Arg) were measured to elucidate the involvement of Arg in nitrogen translocation by arbuscular mycorrhizal (AM) fungi. Mycorrhiza was established between transformed carrot (Daucus carota) roots and Glomus intraradices in two...

  18. First report of 'Candidatus Liberibacter solanacearum' associated with psyllid-affected carrots in Sweden

    Science.gov (United States)

    Carrot (Daucus carota) plants with symptoms resembling those of the carrot psyllid Trioza apicalis and “Candidatus Liberibacter solanacearum” damage were observed in 70% of commercial fields in southern Sweden in August 2011; all cultivars grown were affected, at about 1 to 45% symptomatic plants pe...

  19. GenBank blastn search result: AK064582 [KOME

    Lifescience Database Archive (English)

    Full Text Available AK064582 002-112-F03 AY007820.1 Daucus carota ATPase8 (ATP8) gene, ATP8-Sp1b allele, complete cds; chimeric... ATPase9 (ATP9) gene, ATP9-Sp3 allele, complete cds; and chimeric ATPase6 (ATP6) gen

  20. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

    Science.gov (United States)

    We report a chromosome-scale assembly and analysis of the Daucus carota genome, an important source of provitamin A in the human diet and the first sequenced genome among members of the Euasterid II clade. We characterized two new polyploidization events, both occurring after the divergence of carro...

  1. Molecular detection of aster yellows phytoplasma and 'Candidatus Liberibacter solanacearum' in carrots affected by the psyllid Trioza apicalis (Hemiptera: triozidae) in Finland

    Science.gov (United States)

    Carrot psyllid (Trioza apicalis Förster) causes considerable damage to carrot (Daucus carota L.) in many parts of Europe. It was recently established that the new bacterium “Candidatus Liberibacter solanacearum” is associated with carrot psyllid and plants affected by this insect pest. No other path...

  2. Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food

    DEFF Research Database (Denmark)

    Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.

    2013-01-01

    Aims: To identify and screen dominant Bacillus spp. strains isolated from Bikalga, fermented seeds of Hibiscus sabdariffa for their antimicrobial activities in brain heart infusion (BHI) medium and in a H. sabdariffa seed-based medium. Further, to characterize the antimicrobial substances produced....... They produced several lipopeptide antibiotics and showed good potential for biological control of Bikalga. Significance and Impact of the Study: Pathogenic bacteria often occur in spontaneous food fermentations. This is the first report to identify indigenous B. amyloliquefaciens ssp. plantarum strains...

  3. A study of System Interface Sets (SIS) for the host, target and integration environments of the Space Station Program (SSP)

    Science.gov (United States)

    Mckay, Charles; Auty, David; Rogers, Kathy

    1987-01-01

    System interface sets (SIS) for large, complex, non-stop, distributed systems are examined. The SIS of the Space Station Program (SSP) was selected as the focus of this study because an appropriate virtual interface specification of the SIS is believed to have the most potential to free the project from four life cycle tyrannies which are rooted in a dependance on either a proprietary or particular instance of: operating systems, data management systems, communications systems, and instruction set architectures. The static perspective of the common Ada programming support environment interface set (CAIS) and the portable common execution environment (PCEE) activities are discussed. Also, the dynamic perspective of the PCEE is addressed.

  4. Clavibacter michiganensis ssp sepedonicus: UNA ENFERMEDAD BACTERIANA EN EL CULTIVO DE PAPA (Solanum tuberosum L.) EN SONORA, MÉXICO

    OpenAIRE

    Edgar Omar Rueda-Puente; Maricela Duarte Medina; Ana Gabriela Alvarado Martínez; Adrián Mauricio García Ortega; Mario Antonio Tarazón Herrera; Ramón Jaime Holguín Peña; Bernardo Murillo Amador; José Luís García Hernández; Arnoldo Flores-Hernández; Ignacio Orona-Castillo

    2009-01-01

    A nivel mundial la papa junto con el arroz, el maíz y el trigo, constituyen los cuatro cultivos más importantes para la alimentación humana. En años recientes se ha detectado en algunas regiones de Estados Unidos (EUA) y Canadá, la bacteria Clavibacter michiganensis ssp sepedonicus (Cms) la cual provoca la enfermedad denominada podredumbre anular (PA) en el cultivo de papa. Esta bacteria ocasiona una pudrición en el tubérculo, tallos y hojas de este cultivo y tiene la particularidad de disemi...

  5. Influence of protein isolate from lupin seeds (Lupinus albus ssp. Graecus) on processing and quality characteristics of frankfurters.

    Science.gov (United States)

    Alamanou, S; Bloukas, J G; Paneras, E D; Doxastakis, G

    1996-01-01

    Lupin protein isolate (92% protein) from seeds of Lupinus albus ssp. Graecus (LSPI) was used as powder ingredient for the manufacture of frankfurters at levels 0, 1, 2 and 3% of the formulation weight. Additional 1% water was added during batter formulation to each 1% protein used. LSPI increased (P LSPI level resulted in higher (P LSPI. Frankfurters with 3% LSPI were judged as unacceptable. Incorporation of LSPI at 1% level either in hydrated form or as stabilizer in pre-emulsified fat improved the processing characteristics and overall acceptability of frankfurters made with LSPI as powder ingredient and did not affect the color and texture.

  6. Refractory Toxic Shock-Like Syndrome from Streptococcus dysgalactiae ssp. equisimilis and Intravenous Immunoglobulin as Salvage Therapy: A Case Series

    Directory of Open Access Journals (Sweden)

    Marjan Islam

    2016-01-01

    Full Text Available Infections from Streptococcus dysgalactiae ssp. equisimilis (SDSE can cause a wide variety of infections, ranging from mild cellulitis to invasive disease, such as endocarditis and streptococcal toxic shock-like syndrome (TSLS. Despite prompt and appropriate antibiotics, mortality rates associated with shock have remained exceedingly high, prompting the need for adjunctive therapy. IVIG has been proposed as a possible adjunct, given its ability to neutralize a wide variety of superantigens and modulate a dysregulated inflammatory response. We present the first reported cases of successful IVIG therapy for reversing shock in the treatment of SDSE TSLS.

  7. Large scale profiles of galaxies at z=0-2 studied by stacking the HSC SSP survey data

    Science.gov (United States)

    Kubo, Mariko; Ouchi, Masami; Shibuya, Takatoshi

    2017-03-01

    We are carrying out the study of the evolution of radial surface brightness profiles of galaxies from z = 0 to 2 by stacking analysis using data corrected by the Hyper Suprime-Cam (HSC) Subaru Strategic Program (SSP). This will allow us to constrain the large scale average profiles of various galaxy populations at high redshift. From the stacking analysis of galaxies selected based on their photometric redshifts, we successfully detected the outer components of galaxies at z > 1 extending to at least ~80 kpc, which imply an early formation for the galaxy outskirts.

  8. Fertilization in Brassica campestris ssp.pekinensis and its duration of each stage

    Institute of Scientific and Technical Information of China (English)

    PENG Jie; SHEN Jiaheng

    2007-01-01

    This paper reports the process of fertilization in Brassica campestris ssp.pekinensis and the duration of each stage.The results are as follows:(1)Pollen germinates on stigma 2-3 h after pollination.(2)4-8 h after pollination,pollen tube grows in the style.(3)8-14 h after pollination,pollen tube grows in the ovary and gets into the ovule via the micropyle.(4)16 h after pollination,one sperm nucleus moves to the egg and enters it.(5)The sperm nucleus adheres to the nuclear membrane of the egg 18 h after pollination.(6)20 h after pollination,it enters the egg nucleus and male chromatin gradually disperses and 24 h after pollination,a male nucleolus appears.A large female nucleolus and a small male nucleolus occur in the nucleus of the fertilized egg,and zygote formed.The dispersing of sperm chromatin in the egg nucleus takes about 4 h.(7)32--34 h after pollination,the division of zygote begins.The dormancy stage of the zygote lasts for about 8-10 h.(8)The pair polar nuclei lie in the chalazal end of the egg betbre fertilization,which may fuse into a secondary nucleus or not.(9)16-18 h after pollination,the sperm nucleus moves to the polar nuclei or the secondary nucleus.18 h after pollination,the sperm nucleus adheres to the nuclear membrane of the polar nuclei or that of the secondary nucleus.(10)20 h after pollination,the sperm nucleus enters one of the polar nuclei or the secondary nucleus and a triple fusion takes place.The process of fusion is similar to the karyogamy but faster.The dispersing of the sperm chromatin in the polar nucleus or secondary nucleus takes about 2 h.(11)22 h after pollination,the primary endosperm nucleus formed.The female and male nucleoli cannot fuse with each other betbre mitotic division of the primary endosperm nucleus.(12)24 h after pollination,the division of the primary endosperm nucleus actually takes place.

  9. Subsurface irrigation of potato crop (Solanum tuberosum ssp. Andigena) in Suka Kollus with different drainage systems

    Science.gov (United States)

    Serrano-Coronel, Genaro; Chipana-Rivera, René; Fátima Moreno-Pérez, María; Roldán-Cañas, José

    2016-04-01

    Among the most important hydraulic structures of pre-Hispanic ancestral technology developed in the Andean region, we find the suka kollus, aymara word, called also waru waru, en quechua or raised fields, in English. They are raised platforms surrounded by water canals that irrigate subsurface, but also have the function of draining, to deal with floods because they are surrounding Lake Titicaca. They also have the property of generating a thermoregulatory effect to crops, depending on the configuration of the channels and platforms. Such agro-ecosystems are being abandoned, however, if properly addressed crop management and some drainage canals are replaced by underground drains for increased crop area could be very useful in enabling marginal soils affected by salts and / or excess water. For these reasons, the objective of this study was to evaluate the subsurface irrigation in the potato crop in suka kollus under a system of surface drainage, and mixed drainage (surface and subsurface). The study was conducted in marginal soils of Kallutaca area, located 30 km from the city of La Paz, Bolivia, at a height of 3892 m.a.s.l. The cultivation of the potato (Solanum tuberosum ssp. Andigena) was used. Four treatments were tested with different widths of the platforms: T1 (Control) with drainage through channels; T2 (replacing a channel by a drain); T3 (replacing two channels by two drains); T4 (replacing three channels by three drains). The flow of water into the soil from the water table was predominantly upward, except during periods of high rainfall. In terms of treatments, the flow in T1 was higher, mainly at weeks 8 to 11 after seedling emergence, coinciding with the phenological phases of flowering and at the beginning of the tuber ripening. It was followed by T3, T2 and T4 treatments, respectively. Tuber yield, if one considers that the channels detract arable land, was higher in the T3 treatment,16.4 Mg / ha, followed by T2 treatment, 15.2 Mg / ha, T1

  10. A new synonym of Hylodesmum podocarpum ssp.podocarpum (Leguminosae)%圆菱叶长柄山蚂蝗一新异名

    Institute of Scientific and Technical Information of China (English)

    高信芬

    2004-01-01

    Close examination of the type material of Podocarpium lancangense Y. Y. Qian has shown that this species is indistinguishable from Hylodesmum podocarpum (DC.) H. Ohashi & R. R. Mill ssp. Podocarpum, and thus is reduced to synonymy herein.%查阅了澜沧长柄山蚂蝗Hylodesmum lancangense (Y. Y. Qian) X. Y. Zhu & H. Ohashi的模式标本后,确认该种应归并入圆菱叶长柄山蚂蝗H. podocarpum (DC.) H. Ohashi & R. R. Mill ssp. podocarpum.

  11. Bifidobacterium animalis ssp. lactis BI07 modulates the tumor necrosis factor alpha-dependent imbalances of the enterocyte-associated intestinal microbiota fraction.

    Science.gov (United States)

    Centanni, Manuela; Turroni, Silvia; Rampelli, Simone; Biagi, Elena; Quercia, Sara; Consolandi, Clarissa; Severgnini, Marco; Brigidi, Patrizia; Candela, Marco

    2014-08-01

    Using a previously developed in vitro model to characterize the enterocyte-adherent microbiota fraction, we explored the potential of the probiotic strain Bifidobacterium animalis ssp. lactis BI07 to modulate the inflammation-dependent dysbioses of the enterocyte-adherent microbiota from 12 healthy human donors. According to our findings, B. animalis ssp. lactis BI07 is effective in limiting the increase of pro-inflammatory pathobionts on the inflamed mucosal site, supporting the recovery of a mutualistic community. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  12. Characterization of a putative pollen-specific arabinogalactan protein gene, BcMF8, from Brassica campestris ssp. chinensis.

    Science.gov (United States)

    Huang, Li; Cao, Jia-Shu; Zhang, Ai-Hong; Ye, Yi-Qun

    2008-12-01

    The BcMF8 (Brassica campestris male fertility 8) gene, possessing the features of 'classical' arabinogalactan protein (AGP) was isolated from Brassica campestris L. ssp. chinensis, Makino syn. B. rapa L. ssp. chinensis. This gene was highly abundant in the fertile flower buds but silenced in the sterile ones of genic male sterile A/B line ('ZUBajh97-01A/B') in B. campestris. Expression patterns analysis suggested BcMF8 was a pollen-specific gene, whose transcript started to be expressed at the uninucleate stage and maintained throughout to the pollen at pollination stage. BcMF8 is highly homologous to the known pollen-specific AGP genes Sta 39-4 and Sta 39-3 from B. napus. Isolation and multiple alignment of the homologs of BcMF8 gene in the family Cruciferae indicated that BcMF8 was highly conserved in this family, which reflect the conservation in biological function and importance of this putative AGP gene in plant development. Similarity analysis also demonstrated Sta 39-4 and Sta 39-3 may originate from different genomes.

  13. Macrolide Resistance in the Syphilis Spirochete, Treponema pallidum ssp. pallidum: Can We Also Expect Macrolide-Resistant Yaws Strains?

    Science.gov (United States)

    Šmajs, David; Paštěková, Lenka; Grillová, Linda

    2015-10-01

    Treponema pallidum ssp. pallidum (TPA) causes over 10 million new cases of syphilis worldwide whereas T. pallidum ssp. pertenue (TPE), the causative agent of yaws, affects about 2.5 million people. Although penicillin remains the drug of choice in the treatment of syphilis, in penicillin-allergic patients, macrolides have been used in this indication since the 1950s. Failures of macrolides in syphilis treatment have been well documented in the literature and since 2000, there has been a dramatic increase in a number of clinical samples with macrolide-resistant TPA. Scarce data regarding the genetics of macrolide-resistant mutations in TPA suggest that although macrolide-resistance mutations have emerged independently several times, the increase in the proportion of TPA strains resistant to macrolides is mainly due to the spread of resistant strains, especially in developed countries. The emergence of macrolide resistance in TPA appears to require a two-step process including either A2058G or A2059G mutation in one copy of the 23S rRNA gene and a subsequent gene conversion unification of both rRNA genes. Given the enormous genetic similarity that was recently revealed between TPA and TPE strains, there is a low but reasonable risk of emergence and spread of macrolide-resistant yaws strains following azithromycin treatment.

  14. Content of capsaicin extracted from hot pepper (Capsicum annuum ssp. microcarpum L. and its use as an ecopesticide

    Directory of Open Access Journals (Sweden)

    Koleva-Gudeva Liljana

    2013-01-01

    Full Text Available The newest world trends in the scientific research are directed to production of secondary metabolites, their use and application. Capsaicin, the pungent principle of hot peppers is one of the best known natural compound. Nowadays, the research work is directed to the influence of capsaicin on physiological and biochemical processes of humans, animals, and recently plants as a biopesticide. Phytochemical studies of Capsicum annuum L. increase the application of secondary metabolites in pharmacy, food technology and medicine. In this paper, the possibilities of utilization of Capsicum annuum ssp. microcarpum L. for extracting capsaicin and its use as a biopesticide against the green peach aphid Myzus persicae Sulz. in pepper culture are sublimed. The content of capsaicin was evaluated spectrophotometrically, and the ability of capsaicin for acting as biopesticide was calculated according to Abbott. Results showed that oleoresin from Capsicum annuum ssp. microcarpum L. and its dilution 1:20 are the most efficient as biopesticide. From these results we can say that this kind of peppers can be used as a raw material for extraction of capsaicin, because of its high concentration and efficiency.

  15. Application of a Simple In-House PCR-SSP Technique for HLA-B* 27 Typing in Spondyloarthritis Patients

    Directory of Open Access Journals (Sweden)

    Devraj J. Parasannanavar

    2013-01-01

    Full Text Available Background. Microlymphocytotoxicity (MLCT and flowcytometry (FC are the conventional serological methods to detect HLA-B* 27. Due to some disadvantages in these methods, most of the HLA laboratories have now switched over to molecular methods. Molecular techniques based on commercial kits are expensive; as such many laboratories with limited funds in developing countries cannot afford these techniques. Aims. Our main aim was to standardize a simple inexpensive in-house PCR-SSP technique for HLA-B* 27 typing. Materials and Methods. Sequence Specific primers were designed to amplify all the subtypes of B* 27 using IMGT-HLA sequence database. Accuracy was checked by retyping of 90 PCR-SSOP typed controls. Results. The presence of 149 bp specific band with control band on 2% agarose gel showed B* 27 positivity. No discrepancies were found when compared with PCR-SSOP results. The frequency of HLA-B* 27 was found to be significantly increased (68.75% versus 4.40%, O.R 46.909: P value 6.62E-32 among 700 SpA patients as compared to controls. Clinically, 54% of patients had polyarticular arthritis with SI joints involvement (68% and restricted spine flexion (60%. Conclusion. In-house PCR-SSP technique is very simple and inexpensive technique to detect B* 27 allele, which was strongly associated with SpA patients from Western India.

  16. Experimental and genomic evidence for theindica-type cytoplasmic effect inOryza sativa L. ssp.japonica

    Institute of Scientific and Technical Information of China (English)

    LIU You-hong; TANG Liang; XU Quan; MA Dian-rong; ZHAO Ming-hui; SUN Jian; CHEN Wen-fu

    2016-01-01

    Cytoplasmic effects are important agronomical phenomena that have generated widespread interest in both theory and application. In the present study, ifve high yield rice cultivars (Oryza sativa L. ssp.japonica) in large-scale cultivation in northeast China were determined to possessOryza sativa L. ssp.indica-type cytoplasmusing cytoplasmic subspecies-spe-ciifc molecular markers. This was conifrmed by cytoplasmic genome-wide single nucleotide polymorphisms (SNPs) and functional gene sequencing. Two of these ifvejaponicacultivars were core breeding parents with high yield and the other three were super-high-yield varieties registered by the Ministry of Agriculture of China. We constructed nuclear substitution lines to further demonstrate whether and how thisindica-type cytoplasm contributed to yield improvement by comparing yield components. The results showed that under the samejaponicanuclear background, the lines withindica-type cytoplasm had a signiifcant decrease in tilers in exchange for increased grain number per panicle compared with their recurrent parents. Our results implied that botanical basis of this cytoplasmic effect was to reduce the plant’s branching differentiation to pro-duce more lforal organs under the constant nutrition. Our ifndings open another door for the utilization of inter-subspeciifc hybridization for the improvement of rice cultivar.

  17. [Ssp DnaB intein-mediated ligation of heavy and light chains of coagulation factor VIII in Escherichia coli].

    Science.gov (United States)

    Zhu, Fuxiang; Liu, Zelong; Qu, Huige; Xin, Xiaolin; Dong, Hongxin; Liu, Xiangqin

    2009-07-01

    We studied the ligation of coagulation factor VIII heavy and light chains in Escherichia coli by utilizing the intein-mediated protein trans-splicing. A B-domain deleted factor VIII (BDD-FVIII) gene was broken into two halves of heavy and light chains before Ser1657 which meets the splicing required conserved residue and then fused to 106 and 48 amino acid-containing N-part termed Int-N and C-part termed Int-C coding sequences of split mini Ssp DnaB intein respectively. These two fusion genes were constructed into a prokaryotic expression vector pBV220. Through induction for expression of recombinant protein it displayed an obvious protein band as predicted size of BDD-FVIII protein on SDS-PAGE gel. Western blotting using factor VIII specific antibodies confirmed that this protein band is BDD-FVIII produced by protein trans-splicing. It demonstrated that the heavy and light chains of BDD-FVIII can be efficiently ligated with the Ssp DnaB intein-mediated protein trans-splicing. These results provided evidence for encouraging our ongoing investigation with intein as a means in dual AAV vectors carrying the factor VIII gene to overcome the packaging size limitation of a single AAV vector in hemophilia A gene therapy.

  18. A SNP and SSR based genetic map of asparagus bean (Vigna. unguiculata ssp. sesquipedialis) and comparison with the broader species.

    Science.gov (United States)

    Xu, Pei; Wu, Xiaohua; Wang, Baogen; Liu, Yonghua; Ehlers, Jeffery D; Close, Timothy J; Roberts, Philip A; Diop, Ndeye-Ndack; Qin, Dehui; Hu, Tingting; Lu, Zhongfu; Li, Guojing

    2011-01-06

    Asparagus bean (Vigna. unguiculata ssp. sesquipedialis) is a distinctive subspecies of cowpea [Vigna. unguiculata (L.) Walp.] that apparently originated in East Asia and is characterized by extremely long and thin pods and an aggressive climbing growth habit. The crop is widely cultivated throughout Asia for the production of immature pods known as 'long beans' or 'asparagus beans'. While the genome of cowpea ssp. unguiculata has been characterized recently by high-density genetic mapping and partial sequencing, little is known about the genome of asparagus bean. We report here the first genetic map of asparagus bean based on SNP and SSR markers. The current map consists of 375 loci mapped onto 11 linkage groups (LGs), with 191 loci detected by SNP markers and 184 loci by SSR markers. The overall map length is 745 cM, with an average marker distance of 1.98 cM. There are four high marker-density blocks distributed on three LGs and three regions of segregation distortion (SDRs) identified on two other LGs, two of which co-locate in chromosomal regions syntenic to SDRs in soybean. Synteny between asparagus bean and the model legume Lotus. japonica was also established. This work provides the basis for mapping and functional analysis of genes/QTLs of particular interest in asparagus bean, as well as for comparative genomics study of cowpea at the subspecies level.

  19. A SNP and SSR based genetic map of asparagus bean (Vigna. unguiculata ssp. sesquipedialis and comparison with the broader species.

    Directory of Open Access Journals (Sweden)

    Pei Xu

    Full Text Available Asparagus bean (Vigna. unguiculata ssp. sesquipedialis is a distinctive subspecies of cowpea [Vigna. unguiculata (L. Walp.] that apparently originated in East Asia and is characterized by extremely long and thin pods and an aggressive climbing growth habit. The crop is widely cultivated throughout Asia for the production of immature pods known as 'long beans' or 'asparagus beans'. While the genome of cowpea ssp. unguiculata has been characterized recently by high-density genetic mapping and partial sequencing, little is known about the genome of asparagus bean. We report here the first genetic map of asparagus bean based on SNP and SSR markers. The current map consists of 375 loci mapped onto 11 linkage groups (LGs, with 191 loci detected by SNP markers and 184 loci by SSR markers. The overall map length is 745 cM, with an average marker distance of 1.98 cM. There are four high marker-density blocks distributed on three LGs and three regions of segregation distortion (SDRs identified on two other LGs, two of which co-locate in chromosomal regions syntenic to SDRs in soybean. Synteny between asparagus bean and the model legume Lotus. japonica was also established. This work provides the basis for mapping and functional analysis of genes/QTLs of particular interest in asparagus bean, as well as for comparative genomics study of cowpea at the subspecies level.

  20. USE OF METHYL JASMONATE TO ENHANCE THE PRODUCTION OF 6-METHOXYPODOPHYLLOTOXIN IN CELL CULTURES OF LINUM THRACICUM SSP. THRACICUM

    Directory of Open Access Journals (Sweden)

    Pavlina Sasheva

    2015-09-01

    Full Text Available Secondary metabolites, such as lignans have important ecological role for plants and at the same time are lead structures for drug design in human medicine. The aryltetralin type of lignans are strong cytotoxic agents and are found in members of the genus Linum (Linaceae.Objective: In vitro cultures of Linum thracicum ssp. thracicum were developed to identify a medium type and an elicitation technique that favor enhanced production of the aryltetralin lignan 6-methoxypodophyllotoxin.Method: Methyl jasmonate and salicylic acid were administered to four cell lines of Linum thracicum ssp. thracicum for 24 and 72 hours. The 6-methoxypodophyllotoxin was identified by HPLS-ESI-MS/MS in positive ion mode, and its production was determined via quantitative HPLC analysis.Results: A cell line, called Li-20, which was developed in reduced sucrose environment proved to be the fastest growing and the highest producing among the tested cell lines. Within 24 hours upon MJ elicitation, the eight-day-old Li-20 increased 2.3-fold in 6-methoxypodophyllotoxin content, reaching 4.3 mg on a dry weight basis. Negative or no effect was registered after salicylic acid application.Conclusion: MJ elicitation is an effective strategy to improve the 6-methoxypodophyllotoxin accumulation within short periods of time, and an optimization of the cultivation medium beforehand is a prerequisite in the pipeline.

  1. Crop candidates for the bioregenerative life support systems in China

    Science.gov (United States)

    Chunxiao, Xu; Hong, Liu

    The use of plants for life support applications in space is appealing because of the multiple life support functions by the plants. Research on crops that were grown in the life support system to provide food and oxygen, remove carbon dioxide was begun from 1960. To select possible crops for research on the bioregenerative life support systems in China, criteria for the selection of potential crops were made, and selection of crops was carried out based on these criteria. The results showed that 14 crops including 4 food crops (wheat, rice, soybean and peanut) and 7 vegetables (Chinese cabbage, lettuce, radish, carrot, tomato, squash and pepper) won higher scores. Wheat ( Triticum aestivum L.), rice ( Oryza sativa L.), soybean ( Glycine max L.) and peanut ( Arachis hypogaea L.) are main food crops in China. Chinese cabbage ( Brassica campestris L. ssp. chinensis var. communis), lettuce ( Lactuca sativa L. var. longifolia Lam.), radish ( Raphanus sativus L.), carrot ( Daucus carota L. var. sativa DC.), tomato ( Lycopersicon escalentum L.), squash ( Cucurbita moschata Duch.) and pepper ( Capsicum frutescens L. var. longum Bailey) are 7 vegetables preferred by Chinese. Furthermore, coriander ( Coriandum sativum L.), welsh onion ( Allium fistulosum L. var. giganteum Makino) and garlic ( Allium sativum L.) were selected as condiments to improve the taste of space crew. To each crop species, several cultivars were selected for further research according to their agronomic characteristics.

  2. Isolation of diterpenoid alkaloids from herb and flowers of aconitum napellus ssp. vulgare and electrospray ion trap multiple MS study of these alkaloids

    Science.gov (United States)

    Chen; Koelliker; Oehme; Katz

    1999-05-01

    Chemical investigation of herb and flowers of Aconitum napellus L. ssp. vulgare led to the isolation of 12 diterpenoid alkaloids. Their chemical structures were identified on the basis of NMR and MS and of their complete ion trap multiple fragmentation mass spectrometry study.

  3. Anti-microbial and anti-oxidant activities of Illicium verum, Crataegus oxyacantha ssp monogyna and Allium cepa red and white varieties.

    Science.gov (United States)

    Benmalek, Yamina; Yahia, Ouahiba Ait; Belkebir, Aicha; Fardeau, Marie-Laure

    2013-01-01

    Illicium verum (badiane or star anise), Crataegus oxyacantha ssp monogyna (hawthorn) and Allium cepa (onion), have traditionnally been used as medicinal plants in Algeria. This study showed that the outer layer of onion is rich in flavonols with contents of 103 ± 7.90 µg/g DW (red variety) and 17.3 ± 0.69 µg/gDW (white variety). We also determined flavonols contents of 14.3 ± 0.21 µg/g 1.65 ± 0.61 µg/g for Crataegus oxyacantha ssp monogyna leaves and berries and 2.37 ± 0.10 µg/g for Illicium verum. Quantitative analysis of anthocyanins showed highest content in Crataegus oxyacantha ssp monogyna berries (5.11 ± 0.266 mg/g), while, inner and outer layers of white onion had the lowest contents with 0.045 ± 0.003mg/g and 0.077 ± 0.001 mg/g respectively.   Flavonols extracts presented high antioxidant activity as compared with anthocyanins and standards antioxidants (ascorbic acid and quercetin). Allium cepa and Crataegus oxyacantha ssp monogyna exhibited the most effective antimicrobial activity.

  4. Fine mapping of a quantitative resistance gene for gray leaf spot of maize (Zea mays L.) derived from teosinte (Z. mays ssp. parviglumis)

    Science.gov (United States)

    In previous work, using near isogenic line (NIL) populations in which segments of the tesosinte (Zea mays ssp. parviglumis) genome had been introgressed into the background of the maize line B73, we had identified a QTL on chromosome 8, here called Qgls8, for gray leaf spot resistance. We identified...

  5. A longitudinal study of factors influencing the result of a Mycobacterium avium ssp. paratuberculosis antibody ELISA in milk or dairy cows

    NARCIS (Netherlands)

    Eisenberg, S.W.F.; Veldman, E.; Rutten, V.P.M.G.; Koets, A.P.

    2015-01-01

    The influence of milk yield and milk composition on the diagnosis of Mycobacterium avium ssp. paratuberculosis (MAP) by milk ELISA in the context of the total IgG secretion patterns in milk throughout lactation and serum concentrations were investigated. A 2-yr trial was performed in which 1,410 dai

  6. Sur la Presence d’Echinogammarus du groupe pungens au Proche Orient: E. palmyrensis n. sp., E. cannubinensis n. sp. et E. tabu arcadiensis n. ssp. (Crustacea, Amphipoda)

    NARCIS (Netherlands)

    Alouf, N.J.

    1975-01-01

    Description of three freshwater species of Echinogammarus: E. cannubinensis n. sp., E. tabu arcadiensis n. ssp. from the Lebanon, and E. palmyrensis n. sp. from Tadmor (Palmyra) in the Syrian desert. These taxa are related to E. pungens H. Milne Edwards, to E. stammeri S. Karaman and to E. tabu G.S.

  7. The possible involvement of Mycobacterium avium ssp. paratuberculosis in the aetiology of Crohn's disease: a case control study in the Netherlands

    NARCIS (Netherlands)

    Herrewegh AAPM; Overduin P; Roholl PJM; Gielis FK; Robinson JE; Mahmmod N; Lieverse RJ; Robijn RJ; Zanden AGM van der; Soolingen D van; Dept of Medical Microbiology; Biomedics Scientific Consultancy; LIS; LPI

    2005-01-01

    A case control study was performed to investigate the possible role of Mycobacterium avium ssp. paratuberculosis (Map) in the aetiology of Crohn's disease (CD). Biopsy samples were collected from the ileum and colon of CD patients, Ulcerative Colitis (UC) patients and control persons. The biopsy sam

  8. The possible involvement of Mycobacterium avium ssp. paratuberculosis in the aetiology of Crohn's disease: a case control study in the Netherlands

    NARCIS (Netherlands)

    Herrewegh AAPM; Overduin P; Roholl PJM; Gielis FK; Robinson JE; Mahmmod N; Lieverse RJ; Robijn RJ; van der Zanden AGM; van Soolingen D; LIS; LPI

    2005-01-01

    De bacterie Mycobacterium avium ssp. paratuberculosis (Map) wordt beschouwd als een mogelijke oorzaak van de ziekte van Crohn (morbus Crohn, MC). In samenwerking met Gelre ziekenhuizen heeft het RIVM een onderzoek uitgevoerd naar het voorkomen van Map in darmbiopten van patienten met MC, patienten

  9. Consequences of pre-inoculation with native arbuscular mycorrhizae on root colonization and survival of Artemisia tridentata ssp. wyomingensis (Wyoming big sagebrush) seedlings after transplanting

    Science.gov (United States)

    Bill Eugene Davidson

    2015-01-01

    Inoculation of seedlings with arbuscular mycorrhizal fungi (AMF) is a common practice aimed at improving seedling establishment. The success of this practice largely depends on the ability of the inoculum to multiply and colonize the growing root system after transplanting. These events were investigated in Artemisia tridentata ssp. wyomingensis (Wyoming big sagebrush...

  10. Pólen 2n e mecanismos meióticos de formação em Solanum commersonii ssp 2n pollen and meiotic mechanisms of Formation in Solanum commersonii ssp

    Directory of Open Access Journals (Sweden)

    Lívia Gracielle Oliveira Tomé

    2009-04-01

    Full Text Available Solanum commersonii subsp. commersonii Dun. e Solanum commersonii subsp. malmeanum Bitt. (2n=2x=24 - 1EBN não podem ser diretamente cruzadas com a batata cultivada de S. tuberosum subsp. tuberosum L. (2n=4x=48 -4 EBN em razão da barreira da ploidia e do número de equilíbrio do endosperma (EBN. No entanto, a produção de pólen não reduzido por S. commersonii ssp. (2x=2n=24 - 1EBN, permite o cruzamento desta com dihaplóides de batata e com as espécies diplóides S. phureja Juz. & Bukasov. e S. chacoense Bitt., que possuem 2 EBN. Conduziu-se este trabalho, com o objetivo de determinar o mecanismo meiótico e a freqüência dos grãos de pólen não reduzidos em cinco clones de Solanum commersonii ssp. Foram avaliados três clones de S. commersonii subsp. commersonii (SCC e dois de S. commersonii subsp. malmeanum (SCM. Nas avaliações, duzentos grãos de pólen viáveis foram corados (carmim acético 2% e mensurados, sendo considerados não reduzidos aqueles com o diâmetro igual ou superior a 25 µm. O clone Solanum commersonii subsp. commersonii Dun. (SCC 100 produz 26.1% de polen não reduzido, por fusos fundidos e fusos paralelos, o qual pode ser utilizado em programas de melhoramento.Solanum commersonii subsp. commersonii Dun. and Solanum commersonii subsp. malmeanum Bitt. (2n=2x=24 -1EBN cannot be directly crossed with the cultivated Solanum tuberosum subsp. Tuberosum L. (2n=4x=48 - 4EBN species due to ploidy barriers and endosperm balance number (EBN. However, non-reduced pollen production by the wild species S. commersonii ssp. (2x=2n=24 -1EBN, allows the crossing of these species with dihaploids of potato and with the diploids species, S. phureja Juz. & Bukasov. and S. chacoense Bitt., all with 2EBN. The aim of this work was to determine the meiotic mechanism and frequency of non-reduced pollen production of five clones of S. commersonii ssp. Three different clones of S. commersonii subsp. commersonii Dun. (SCC and two of S

  11. Primula munroi 的产自东喜马拉雅的一个新亚种 --P. munroi ssp. schizocalyx%A new subspecies of Primula munroi Lindl. from the Eastern Himalaya--P. munroi ssp. schizocalyx

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@ In the course of revising the genus Primula Linn.(Primulaceae) in the Himalayas of Indian region, the authors came across a set of collections identified as P. involucrata Wall. gathered by the pioneer Himalayan travellers, merely written on determinavit slips as P. involucrata Wall. forma schizocalyx by I. B. Balfour without any date. Critical studies revealed that these specimens are quite distinct from the species proper so far described. The new taxon is described as a subspecies and illustrated. As P. involucrata Wall. ex Duby (1844) is a later homonym of P. involucrata Sweet (1839) and illegitimate, and its correct name is P. munroi Lindl. (1847), we name our new subspecies as P. munroi ssp. schizocalyx Balf. f. ex Basak et Maiti. 

  12. Enhanced natural killer cell activation by exopolysaccharides derived from yogurt fermented with Lactobacillus delbrueckii ssp. bulgaricus OLL1073R-1.

    Science.gov (United States)

    Makino, Seiya; Sato, Asako; Goto, Ayako; Nakamura, Marie; Ogawa, Miho; Chiba, Yoshika; Hemmi, Jun; Kano, Hiroshi; Takeda, Kazuyoshi; Okumura, Ko; Asami, Yukio

    2016-02-01

    Yogurt is generally recognized as a beneficial food for our health, but research into its physiological effects has focused mainly on intestinal dysfunctions such as constipation and diarrhea. We previously found yogurt fermented with Lactobacillus delbrueckii ssp. bulgaricus OLL1073R-1 (hereafter OLL1073R-1) could reduce risks of catching the common cold and flu in human trials. It was assumed that immunostimulatory exopolysaccharide (EPS) produced from OLL1073R-1 play an important role in this context. However, few studies have examined the immunostimulatory effects of traditional Bulgarian yogurts fermented with different strains of lactobacilli and their metabolites. Therefore, we screened 139 L. delbrueckii ssp. bulgaricus strains and identified OLL1073R-1 as the most robust producer of EPS. This strain was also the only strain that induced the production of IFN-γ in vitro. Oral administration of the EPS or yogurt fermented with OLL1073R-1 and Streptococcus thermophilus OLS3059 (OLL1073R-1 yogurt) augmented natural killer (NK) cell activity and induced IFN-γ production in spleen cells in mice, whereas 2 other yogurts fermented with other strains had no effect on NK cell activity. Cellular preparations of the OLL1073R-1 strain also slightly augmented NK cell activity, but were less effective than EPS itself. The EPS-dependent stimulation of NK cell activity was abrogated in IFN-γ knockout mice and in myeloid differentiation factor 88 knockout mice. Furthermore, IFN-γ production from spleen cells stimulated with EPS was completely blocked with both anti-IL-12 and anti-IL-18 antibodies in vitro. These findings suggest that NK cell activation by OLL1073R-1 yogurt is EPS-dependent, occurs via IL-12- and IL-18-mediated IFN-γ production, and requires myeloid differentiation factor 88. We showed that traditional Bulgarian yogurt could exert immunostimulatory effects by selecting starter strains and part of the mechanisms depend on IFN-γ inducible EPS produced

  13. EVALUACIÓN DE UNA COLECCIÓN DEL GÉNERO Triticum: TRIGO HARINERO (Triticum aestivum ssp aestivum, TRIGO DURO (Triticum turgidum ssp. durum Y TRITICALE (X Triticum secale Wittmack EN LAS CONDICIONES DEL OCCIDENTE DE CUBA

    Directory of Open Access Journals (Sweden)

    R. Plana

    2006-01-01

    Full Text Available En el Instituto Nacional de Ciencias Agrícolas (INCA se evaluó una colección del género Triticum, con el objetivo de conocer el comportamiento de diferentes especies en las condiciones del occidente de Cuba. Las especies estudiadas fueron: Triticum aestivum ssp. aestivum, Triticum turgidum ssp. durum y X Triticum secale Wittmack. Se utilizó un diseño experimental de bloques al azar con cuatro repeticiones. Los caracteres analizados fueron altura de la planta (cm, longitud de las espigas (cm, masa de mil granos (g y rendimiento agrícola (t.ha-1. Se utilizó la estadística descriptiva para cada una de las variables estudiadas, estimándose la media y desviación típica por especie. La variedad cubana de trigo harinero CC-204 fue utilizada como control. La matriz de datos obtenida (genotipo x variable fue procesada mediante la técnica multivariada de Componentes Principales. Los datos para todos los análisis estadísticos se ejecutaron por el paquete estadístico SPSS 11. 0 para Windows. La mayoría de los genotipos tuvieron un comportamiento medio general, aunque se separaron del resto algunos genotipos de trigo harinero y triticale. Los valores de la media y desviación estándar para las variables analizadas muestran que no fue posible distinguir diferencias por especie, aunque las plantas de trigo duro fueron las de menor altura, siendo los mejores genotipos: 12 y 54 de la especie T. aestivum (trigo harinero; 17, 18 y 25 de T. durum (trigo duro; 29 y 37 del X Triticum secale (tritic

  14. Kinetics of Batch Fermentation in the Cultivation of a Probiotic Strain Lactobacillus Delbrueckii Ssp. Bulgaricus B1

    Directory of Open Access Journals (Sweden)

    Goranov Bogdan

    2015-07-01

    Full Text Available A comparative study of kinetic models to describe the dynamics of the fermentation process of culturing of a probiotic strain Lactobacillus delbrueckii ssp. bulgaricus B1 was performed. The models of Monod, Aiba, Tiessier, Hinshelwood and the equation of the logistic curve combined with the model of Ludeking-Piret were used. It has been found that the different models described the observed fermentation dynamics differently. The conducted comparative study demonstrated that the models of Monod and the equation of the logistic curve combined with the model of Ludeking-Piret were suitable for the description of the fermentation dynamics. The mathematical models showed no significant product and/or substrate inhibition. The culture developed with a low specific growth rate, but nevertheless it accumulated 1012-1013 viable cells. The substrate was absorbed primarily from cells in the stationary growth phase rather than cells in the exponential growth phase

  15. Preventative effects of a probiotic,Lactobacillus salivarius ssp.salivarius,in the TNBS model of rat colitis

    Institute of Scientific and Technical Information of China (English)

    Laura Peran; Julio Galvez; Desiree Camuesco; Monica Comalada; Ana Nieto; Angel Concha; Maria Paz Diaz-Ropero; Monica Olivares; Jordi Xaus; Antonio Zarzuelo

    2005-01-01

    AIM: To investigate the intestinal anti-inflammatory effect and mechanism of a probiotic Lactobacillus sakuvarius ssp.salivariusCECT5713 in the TNBS model of rat colitis.METHODS: Female Wistar rats (180-200 g) were used in this study. A group of rats were administered orally the probiotic L. salivarius ssp. salivarius (5×108 CFU suspended in 0.5 mL of skimmed milk) daily for 3 wk. Two additional groups were used for reference, a non-colitic and a control colitic without probiotic treatment, which received orally the vehicle used to administer the probiotic. Two weeks after starting the experiment, the rats were rendered colitic by intracolonic administration of 10 mg of TNBS dissolved in 0.25 mL of 500 mL/L ethanol. One week after colitis induction, all animals were killed and colonic damage was evaluated both histologically and biochemically. The biochemical studies performed in colonic homogenates include determination of myeloperoxidase (MPO) activity,glutathione (GSH) content, leukotriene B4 (LTB4) and tumor necrosis factor α (TNF-α) levels, as well as inducible nitric oxide synthase (iNOS) expression. In addition, the luminal contents obtained from colonic samples were used for microbiological studies, in order to determine Lactobacilli and Bifidobacteria counts.RESULTS: Treatment of colitic rats with L. salivarius ssp.salivarius resulted in amelioration of the inflammatory response in colitic rats, when compared with the corresponding control group without probiotic treatment. This antiinflammatory effect was evidenced macroscopically by a significant reduction in the extent of colonic necrosis and/or inflammation induced by the administration of TNBS/ethanol (2.3+0.4 cm vs3.4+0.3 cm in control group,P<0.01) and histologically by improvement of the colonic architecture associated with a reduction in the neutrophil infiltrate in comparison with non-treated colitic rats. The latter was confirmed biochemically by a significant reduction of colonic MPO

  16. Isolation and Characterisation of Bacteriocin and Aggregation-Promoting Factor Production in Lactococcus lactis ssp. lactis BGBM50 Strain

    Directory of Open Access Journals (Sweden)

    Nemanja Mirkovic

    2015-01-01

    Full Text Available Lactococcus lactis ssp. lactis BGBM50, a producer of lactococcin G and aggregation-promoting factor, was isolated from selected lactic acid bacteria taken from semi-hard cheese traditionally produced in the village Žanjic, Montenegro. Strain BGBM50 harbours a number of plasmids of diff erent sizes. Plasmid curing experiments showed that genes for bacteriocin production are located on pBM140, a plasmid 140 kb in length. PCR analysis with primers specifi c for lactococcin Q and G genes gave fragment of the expected size. In addition, after plasmid curing of strain BGBM50, different derivatives with altered phenotypes were obtained, among them BGBM50-34 strain, which retained bacteriocin synthesis but had enhanced aggregation ability.

  17. Comparative essential oil composition and antifungal effect of bitter fennel (Foeniculum vulgare ssp. piperitum) fruit oils obtained during different vegetation.

    Science.gov (United States)

    Ozcan, Mehmet Musa; Chalchat, Jean-Claude; Arslan, Derya; Ateş, Ayşe; Unver, Ahmet

    2006-01-01

    The chemical composition of the flower and unripe and ripe fruits from fennel (bitter) (Foeniculum vulgare ssp. piperitum) has been examined by gas chromatography and gas chromatography-mass spectrometry. The main identified components of the flower and unripe and ripe fruit oils were estragole (53.08%, 56.11%, and 61.08%), fenchone (13.53%, 19.18%, and 23.46%), and alpha-phellandrene (5.77%, 3.30%, and 0.72%), respectively. Minor qualitative and major quantitative variations for some compounds of essential oils were determined with respect to the different parts of F. vulgare. The oils exerted varying levels of antifungal effects on the experimental mycelial growth of Alternaria alternata, Fusarium oxysporum, and Rhizoctonia solani. The 40 ppm concentrations of fennel oils showed inhibitory effect against mycelial growth of A. alternaria, whereas 10 ppm levels were ineffective. The analyses show that fennel oils exhibited different degrees of fungistatic activity depending on the doses.

  18. Transformation of Chinese Cabbage (Brassica rapa L. ssp.pekinensis) by Agrobacterium Micro-Injection into Flower Bud

    Institute of Scientific and Technical Information of China (English)

    YAN Ji-yong; HE Yu-ke; CAO Jia-shu

    2003-01-01

    We obtained two lines of Chinese head cabbage (Brassica rapa L. ssp. pekinensis) selfed progenies containing both an anti-sense gene of BcpLH and a gene for resistance to kanamycin by micro-injecting buds of their primary transformants (T0) with Agrobacterium tumefaciens strain LBA4404. 31 positive plants resistant to kanamycien were recovered. Southern blot analysis confirmed the presence of T-DNA in two transgenic plants. One (DHZ-13-1) exhibits the characteristics of out-toward rosette and cauline leaves, and nested flower model in which secondary complete flower developed from the base of the primary ovary and the third flower from the ovary in the secondary flower, and so on, while another(DHZ-6-1) has no phenotype change. ABA and IAA affected the root growth of progeny of DHZ-13-1, but 6-BA was insensitive to hypocotyl growth during its seedling development.

  19. Morphologlcal and anatomical structure of generative organs of Salsola kali ssp. ruthenica (lljin Soó at the SEM level

    Directory of Open Access Journals (Sweden)

    Krystyna Idzikowska

    2011-01-01

    Full Text Available The morphology and anatomy of generative organs of Salsola kali ssp. ruthenica was examined in detail using the light (LM and scanning electron microscopy (SEM. The whole flowers, fruits and their parts (pistil, stamens, sepals, embryo, seed were observed in different developmental stages. In the first stage (June, flower buds were closed. In the second stage (August, flowers were ready for pollination/fertilization. In the third stage (September, fruits were mature. Additionally, the anatomical and morphological structure of sepals was observed by means of LM and SEM. Thanks to the transverse and longitudinal semi-sections through sepals, the first phase of wing formation was recorded by SEM. The appearance of stomata in the epidermal cells of sepals above the forming wings was very interesting, too. The stomata were observed also in mature fruits.

  20. Development of a typing system for epidemiological studies of porcine toxin-producing Pasteurella multocida ssp. multocida in Denmark

    DEFF Research Database (Denmark)

    Fussing, V.; Nielsen, Jens; Bisgaard, M.

    1999-01-01

    pneumonic lungs. Strains from lungs were all of capsular Type A, whereas strains from nasal swabs were of both capsular Types A and D. Only 9% of the strains contained plasmids, which could not be associated with antibiotic resistance. Phage-typing divided 61% of strains into 10 groups, while 39% were non......The aim of the present study was to evaluate capsular-typing, plasmid-profiling, phage-typing and ribotyping for epidemiological studies of toxin-producing Pasteurella multocida ssp. multocida in Denmark. The evaluation of methods was based on 68 strains from nasal swabs and 14 strains from...... of Danish strains. Phage-typing of isolates from an outbreak of atrophic rhinitis involving six herds in 1985 showed the existence of an epidemic strain. This type was recognised in the herd suspected of being the source of the infections and in four of the five infected herds. These findings were supported...

  1. Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains.

    Directory of Open Access Journals (Sweden)

    Helena Pětrošová

    Full Text Available BACKGROUND: Treponema pallidum ssp. pallidum (TPA, the causative agent of syphilis, and Treponema pallidum ssp. pertenue (TPE, the causative agent of yaws, are closely related spirochetes causing diseases with distinct clinical manifestations. The TPA Mexico A strain was isolated in 1953 from male, with primary syphilis, living in Mexico. Attempts to cultivate TPA Mexico A strain under in vitro conditions have revealed lower growth potential compared to other tested TPA strains. METHODOLOGY/PRINCIPAL FINDINGS: The complete genome sequence of the TPA Mexico A strain was determined using the Illumina sequencing technique. The genome sequence assembly was verified using the whole genome fingerprinting technique and the final sequence was annotated. The genome size of the Mexico A strain was determined to be 1,140,038 bp with 1,035 predicted ORFs. The Mexico A genome sequence was compared to the whole genome sequences of three TPA (Nichols, SS14 and Chicago and three TPE (CDC-2, Samoa D and Gauthier strains. No large rearrangements in the Mexico A genome were found and the identified nucleotide changes occurred most frequently in genes encoding putative virulence factors. Nevertheless, the genome of the Mexico A strain, revealed two genes (TPAMA_0326 (tp92 and TPAMA_0488 (mcp2-1 which combine TPA- and TPE- specific nucleotide sequences. Both genes were found to be under positive selection within TPA strains and also between TPA and TPE strains. CONCLUSIONS/SIGNIFICANCE: The observed mosaic character of the TPAMA_0326 and TPAMA_0488 loci is likely a result of inter-strain recombination between TPA and TPE strains during simultaneous infection of a single host suggesting horizontal gene transfer between treponemal subspecies.

  2. Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima - ancestor of all beet crops - and modern sugar beets

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    Christin eZachow

    2014-08-01

    Full Text Available The structure and function of the plant microbiome is driven by plant species and prevailing environmental conditions. Effectuated by breeding efforts, modern crops diverge genetically and phenotypically from their wild relatives but little is known about consequences for the associated microbiota. Therefore, we studied bacterial rhizosphere communities associated with the wild beet B. vulgaris ssp. maritima grown in their natural habitat soil from coastal drift lines (CS and modern sugar beets (Beta vulgaris ssp. vulgaris cultivated in CS and potting soil (PS under greenhouse conditions. Analysis of 16S rRNA gene fingerprints and pyrosequencing-based amplicon libraries revealed plant genotype- and soil-specific microbiomes. Wild beet plants harbor distinct operational taxonomic units (OTUs and a more diverse bacterial community than the domesticated sugar beet plants. Although the rhizospheres of both plant genotypes were dominated by Proteobacteria and Planctomycetes, 47.4% of dominant OTUs were additionally detected in the wild beet rhizosphere. Analysis of the cultivable fraction confirmed these plant genotype-specific differences at functional level. The proportion of isolates displayed in vitro activity against phytopathogens was lower for wild beet (≤45.8% than for sugar beet (≤57.5%. Conversely, active isolates from the wild beet exhibited stronger ability to cope with abiotic stresses. From all samples, active isolates of Stenotrophomonas rhizophila were frequently identified. In addition, soil type-specific impacts on the composition of bacterial communities were found: Acidobacteria, Chloroflexi, and Planctomycetes were only detected in plants cultivated in CS; whereas Bacteroidetes and Proteobacteria dominated in PS. Overall, in comparison to modern sugar beets, wild beets were associated with taxonomically and functionally distinct microbiomes.

  3. Emergence of gynodioecy in wild beet (Beta vulgaris ssp. maritima L.): a genealogical approach using chloroplastic nucleotide sequences

    Science.gov (United States)

    Fénart, Stéphane; Touzet, Pascal; Arnaud, Jean-François; Cuguen, Joël

    2006-01-01

    Gynodioecy is a breeding system where both hermaphroditic and female individuals coexist within plant populations. This dimorphism is the result of a genomic interaction between maternally inherited cytoplasmic male sterility (CMS) genes and bi-parentally inherited nuclear male fertility restorers. As opposed to other gynodioecious species, where every cytoplasm seems to be associated with male sterility, wild beet Beta vulgaris ssp. maritima exhibits a minority of sterilizing cytoplasms among numerous non-sterilizing ones. Many studies on population genetics have explored the molecular diversity of different CMS cytoplasms, but questions remain concerning their evolutionary dynamics. In this paper we report one of the first investigations on phylogenetic relationships between CMS and non-CMS lineages. We investigated the phylogenetic relationships between 35 individuals exhibiting different mitochondrial haplotypes. Relying on the high linkage disequilibrium between chloroplastic and mitochondrial genomes, we chose to analyse the nucleotide sequence diversity of three chloroplastic fragments (trnK intron, trnD–trnT and trnL–trnF intergenic spacers). Nucleotide diversity appeared to be low, suggesting a recent bottleneck during the evolutionary history of B. vulgaris ssp. maritima. Statistical parsimony analyses revealed a star-like genealogy and showed that sterilizing haplotypes all belong to different lineages derived from an ancestral non-sterilizing cytoplasm. These results suggest a rapid evolution of male sterility in this taxon. The emergence of gynodioecy in wild beet is confronted with theoretical expectations, describing either gynodioecy dynamics as the maintenance of CMS factors through balancing selection or as a constant turnover of new CMSs. PMID:16777728

  4. Possibilities Concerning Diagnosis of the SSP-FK Aircraft Fire Suppression System in Terms of Determination of Reasons for False Fire Alarms / Możliwości Diagnozowania Lotniczego Systemu Przeciwpożarowego SSP-FK w Aspekcie Określania Przyczyn Fałszywego Sygnalizowania Pożaru

    Directory of Open Access Journals (Sweden)

    Szelmanowski Andrzej

    2015-09-01

    Full Text Available W artykule przedstawiono wybrane wyniki prac realizowanych w Instytucie Technicznym Wojsk Lotniczych (ITWL w zakresie badań instalacji przeciwpożarowej SSP-FK stosowanej na wielu typach wojskowych statków powietrznych eksploatowanych w Siłach Zbrojnych RP. Dla określania warunków fałszywego sygnalizowania pożaru opracowano modele symulacyjne działania bloków wykonawczych SSP-FK. Badania modeli symulacyjnych wykonano w pakietach obliczeniowych Matlab-Simulink i Circuit-Maker. Wyniki tych prac zostały wykorzystane do diagnostyki instalacji SSP-FK w trakcie badania rzeczywistych przypadków fałszywego zadziałania tych urządzeń.

  5. Possibilities Concerning Diagnosis of the SSP-FK Aircraft Fire Suppression System in Terms of Determination of Reasons for False Fire Alarms / Możliwości Diagnozowania Lotniczego Systemu Przeciwpożarowego Ssp-Fk W Aspekcie Określania Przyczyn Fałszywego Sygnalizowania Pożaru

    Directory of Open Access Journals (Sweden)

    Szelmanowski Andrzej

    2014-12-01

    Full Text Available W artykule przedstawiono wybrane wyniki prac realizowanych w Instytucie Technicznym Wojsk Lotniczych (ITWL w zakresie badań instalacji przeciwpożarowej SSP-FK stosowanej na wielu typach wojskowych statków powietrznych eksploatowanych w Siłach Zbrojnych RP. Dla określania warunków fałszywego sygnalizowania pożaru opracowano modele symulacyjne działania bloków wykonawczych SSP-FK. Badania modeli symulacyjnych wykonano w pakietach obliczeniowych Matlab-Simulink i Circuit-Maker. Wyniki tych prac zostały wykorzystane do diagnostyki instalacji SSP-FK w trakcie badania rzeczywistych przypadków fałszywego zadziałania tych urządzeń.

  6. Avaliação da atividade antimicrobiana e citotóxica de extratos de Gochnatia polymorpha ssp floccosa Evaluation of antimicrobial and cytotoxic activitiy of extracts from Gochnatia polymorpha (Less ssp floccosa

    Directory of Open Access Journals (Sweden)

    Maria Élida A. Stefanello

    2006-12-01

    Full Text Available Neste estudo procedeu-se a avaliação da atividade antimicrobiana e citotóxica de extratos de Gochnatia polymorpha ssp floccosa, espécie empregada na medicina popular contra doenças respiratórias. Folhas, cascas do tronco e ramos foram extraídos com hexano, diclorometano e etanol, sucessivamente, sendo obtidos os respectivos extratos brutos. A atividade antimicrobiana foi determinada pelo método de difusão em ágar utilizando-se bactérias Gram-positivas, Gram-negativas e fungos. A avaliação da citotoxicidade foi realizada empregando-se o ensaio de letalidade contra Artemia salina. Nenhum dos extratos mostrou atividade citotóxica. Os extratos das folhas apresentaram uma fraca atividade antimicrobiana frente a algumas cepas de Staphylococcus aureus e Streptococcus mutans, enquanto o extrato em diclorometano dos ramos e o extrato em etanol das cascas foram ativos contra Micrococcus luteus, Staphylococcus aureus e S. epidermidis. A maior atividade antimicrobiana foi observada para o extrato em diclorometano das cascas, que inibiu o crescimento de Micrococcus luteus, Staphylococcus aureus, S. epidermidis, Streptococcus mutans, Enterococcus faecalis e Candida albicans. Esta atividade parece estar relacionada à presença de diterpenos no extrato. Nenhum dos extratos estudados (a 5,0 mg/mL mostrou atividade frente a cepas de bactérias Gram-negativas. Esses resultados demonstram o potencial dessa planta como fonte de compostos antibacterianos e justificam, parcialmente, seu uso popular.The antimicrobial and cytotoxic activities of Gochnatia polymorpha ssp floccosa, a medicinal plant used against respiratory diseases, were evaluated. Successive petroleum ether, dichloromethane and ethanol extracts of dried leaves, trunk bark and stems were used in the brine shrimp lethality bioassay and tested against 22 strains of microorganisms (Gram-positive and Gram-negative bacteria and fungi by the well-diffusion agar method. None of the extracts

  7. Antimicrobial susceptibilities and random amplified polymorphic DNA-PCR fingerprint characterization of Lactococcus lactis ssp. lactis and Lactococcus garvieae isolated from bovine intramammary infections.

    Science.gov (United States)

    Plumed-Ferrer, C; Barberio, A; Franklin-Guild, R; Werner, B; McDonough, P; Bennett, J; Gioia, G; Rota, N; Welcome, F; Nydam, D V; Moroni, P

    2015-09-01

    In total, 181 streptococci-like bacteria isolated from intramammary infections (IMI) were submitted by a veterinary clinic to Quality Milk Production Services (QMPS, Cornell University, Ithaca, NY). The isolates were characterized by sequence analysis, and 46 Lactococcus lactis ssp. lactis and 47 Lactococcus garvieae were tested for susceptibility to 17 antibiotics. No resistant strains were found for β-lactam antibiotics widely used in clinical practice (penicillin, ampicillin, and amoxicillin), and all minimum inhibitory concentrations (MIC) were far from the resistance breakpoints. Eight strains had MIC intermediate to cefazolin. The random amplification of polymorphic DNA (RAPD)-PCR fingerprint patterns showed a slightly higher heterogeneity for Lc. lactis ssp. lactis isolates than for Lc. garvieae isolates.

  8. A Simplified PCR-SSP Method for HLA-A2 Subtype in a Population of Wuhan, China

    Institute of Scientific and Technical Information of China (English)

    Bing Liang; Lijun Zhu; Zhihui Liang; Xiufang Weng; Xiaoling Lu; Cai'e Zhang; Hui Li; Xiongwen Wu

    2006-01-01

    HLA-A2 is the most frequent HLA-A allele in all ethnic populations, and an important restriction element for peptide presentation to T cells in infectious disease and cancer. However, the HLA-A2 supertype consisting of up to 75 subtypes, mutation studies and analyses using cytotoxic T lymphocytes suggest the functional relevance of subtype-specific differences in HLA-A2 molecules for peptide binding and T-cell recognition. Therefore, it is necessary for T-cell response study to discriminate the HLA-A2 subtypes and to understand the profile of HLA-A2 allelic distribution in a given population. In this study, we developed a simple, robust approach based on the nested polymerase chain reaction using sequence-specific primers (PCR-SSP) to discriminate 17 HLA-A2 subtypes which cover the most HLA-A2 alleles (> 99% allele frequency) reported in Chinese, using 15 combinations of 19 allelic specific primers. In the first round of PCR, 3 combinations of 5 primers were used to determine whether the tested sample was HLA-A2 positive, meanwhile the subtypes of HLA-A*0209 and HLA-A*0215N were determined for the variant position of these two subtypes is in exon 4 instead of exon 2, 3. Samples of HLA-A2 positive were subtyped in the second round of PCR, using PCR products of the first round as templates. This strategy was applied to test the samples of 78 random HLA-A2 positive individuals for their HLA-A2 subtypes. Those samples were screened for HLA-A2 positive by the first round PCR-SSP from 154 healthy blood donors in Wuhan, China. The subtyping results were verified by using flow cytometric analysis (FCM) with HLA-A2 specific monoclonal antibody BB7.2 and DNA sequencing. The typing results of the samples show 50.7% random individuals in the population carry HLA-A2, HLA-A*0201 ranks the first (allele frequency = 15.5%), followed by A*0207 (5.8%),A*0206 (4.7%), A*0203 (2.6%), A*0210 (0.7%), and these 5 alleles account for 99.0% HLA-A2 subtypes of allele frequency. Our study

  9. Lutzomyia gasparviannai Martins, Godoy & Silva, 1962, probable vector of Leishmania mexicana ssp. in Viana municipality, Espírito Santo State, Brazil

    Directory of Open Access Journals (Sweden)

    Aloísio Falqueto

    1985-12-01

    Full Text Available Dos flebótomos atraídos pelo Proechimys iheringi numa área onde esse roedor foi achado naturalmente infectado por Leishmania mexicana ssp., 98,1% foram Lutzomyia gasparviannai, o que sugere que essa espécie não antropofílica seja o transmissor entre os roedores mas não habitualmente ao homem.

  10. Silicon substrates for thin-film solar arrays manufactured by means of the SSP method. Final report on the research project. Silicium-Substrate fuer Duennschicht-Solarzellen nach dem SSP-Verfahren. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Haas, F.; Osswald, D.; Zimmermann, W.; Faller, F.; Bau, S.

    1998-10-01

    The first year of the present project saw the design of a plant and construction office for the manufacture of silicon substrates for thin-film solar arrays by means of the SSP (Silicon Sheets from Powder) method. The plant was designed with a mind to flexibility and user friendliness so as to facilitate later optimisation of the ribbon manufacturing process as required by future demands. For the most part the plant was built by a local fine mechanics company. Some components such as the entire electricity supply system for the lamp heater had to be purchased separately. After the first project year the plant was ready for operation, though some components had to be reworked after the first ribbon manufacturing runs. The remaining year of the projected run time was dedicated to the optimisation of the ribbon manufacturing process. Not all of the aims set out at the beginning were actually achieved, notably due to the unavailability of a powder of optimum grain size (100 - 300 [mu]m). The manufactured Si ribbons have the specified width (210 mm)and length (1.5 m), but they are too thick (800 [mu]m). It proved possible to increase process speed to 100 mm/min, resulting in an output of 1.2 m-2/h. Given an optimum rate of utilisation, i.e. four-shift operation, the plant can produce 700,000 modules of 100 x 100 mm-2, the equivalent of 1 MW, per year.

  11. Optimization of Ultrasound-Assisted Extraction of Arbutin from Leaves of Pyrus elaeagnifolia Pallas ssp. elaeagnifolia (Rosaceae by Response Surface Methodology Mehtap

    Directory of Open Access Journals (Sweden)

    DONMEZ SAHIN

    2016-01-01

    Full Text Available Pyrus elaeagnifolia Pallas. ssp. elaeagnifolia is a medicinal plant used in traditional medicine for the treatment of various diseases in Turkey. The leaves of Pyrus elaeagnifolia ssp. elaeagnifolia are a rich source of arbutin, which is a naturally occurring derivative of hydroquinone. It is found in various plant species belonging to diverse families, such as Lamiaceae, Ericaceae, Saxifragaceae and Rosaceae. It inhibits tyrosinase and has been employed as a cosmetic skin whitening agent. In this study, Response Surface Methodology (RSM using a Box Behnken Design (BBD was employed to optimize the condition for extraction of arbutin from the leaves of Pyrus elaeagnifolia ssp. elaeagnifolia. Three influencing factors; methanol concentration, period of ultrasoundassisted extraction and extraction temperature were investigated in the ultrasonic aqueous extraction. The Response Surface Methodology was applied to optimize the extraction process focused on arbutin content with respect to the above influencing factors. The best combination of each significant factor was determined by RSM design and optimum pretreatment conditions for maximum arbutin content were established to be methanol concentration of 48.54 %, extraction time of 39.32 min. And extraction temperature of 43.71 0C. Under these conditions 5.37 % of arbutin content was observed experimentally, similar to the theoretical prediction of 5.30 %.

  12. Chemical Composition of Ballota macedonica Vandas and Ballota nigra L. ssp. foetida (Vis.) Hayek Essential Oils - The Chemotaxonomic Approach.

    Science.gov (United States)

    Đorđević, Aleksandra S; Jovanović, Olga P; Zlatković, Bojan K; Stojanović, Gordana S

    2016-06-01

    The essential oils isolated from fresh aerial parts of Ballota macedonica (two populations) and Ballota nigra ssp. foetida were analyzed by GC and GC/MS. Eighty five components were identified in total; 60 components in B. macedonica oil (population from the Former Yugoslav Republic of Macedonia), 34 components in B. macedonica oil (population from the Republic of Serbia), and 33 components in the oil of B. nigra ssp. foetida accounting for 93.9%, 98.4%, and 95.8% of the total oils, respectively. The most abundant components in B. macedonica oils were carotol (13.7 - 52.1%), germacrene D (8.6 - 24.6%), and (E)-caryophyllene (6.5 - 16.5%), while B. nigra ssp. foetida oil was dominated by (E)-phytol (56.9%), germacrene D (10.0%), and (E)-caryophyllene (4.7%). Multivariate statistical analyses (agglomerative hierarchical cluster analysis and principal component analysis) were used to compare and discuss relationships among Ballota species examined so far based on their volatile profiles. The chemical compositions of B. macedonica essential oils are reported for the first time.

  13. The extracellular phage-host interactions involved in the bacteriophage LL-H infection of Lactobacillus delbrueckii ssp. lactis ATCC 15808

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    Patricia eMunsch-Alatossava

    2013-12-01

    Full Text Available The complete genome sequence of Lactobacillus bacteriophage LL-H was determined in 1996. Accordingly, LL-H has been used as a model phage for the infection of dairy Lactobacillus, specifically for thermophilic Lb. delbrueckii ssp. lactis host strains, such as ATCC 15808. One of the major goals of phage LL-H research consisted of the characterization of the the first phage-host interactions at the level of phage adsorption and phage DNA injection steps to determine effective and practical methods to minimise the risks associated with the appearance and attack of phages in the manufacture of yoghurt, and Swiss or Italian type hard cheeses, which typically use thermophilic LAB starter cultures containing Lb. delbrueckii strains among others. This mini review article summarises the present data concerning (i the special features, particle structure and components of phage LL-H and (ii the structure and properties of lipoteichoic acids (LTAs, which are the phage LL-H receptor components of Lb. delbrueckii ssp. lactis host strains. Moreover, a model of the first, extracellular, phage-host interactions for the infection of Lb. delbrueckii ssp. lactis ATCC 15808 by phage LL-H is presented and further discussed.

  14. Survival of Mycobacterium avium ssp. paratuberculosis in yoghurt and in commercial fermented milk products containing probiotic cultures.

    Science.gov (United States)

    Van Brandt, L; Coudijzer, K; Herman, L; Michiels, C; Hendrickx, M; Vlaemynck, G

    2011-05-01

    To assess the survival of Mycobacterium avium ssp. paratuberculosis (MAP) in yoghurt and commercial fermented milk products containing probiotic strains. Whole and skimmed UHT milk artificially inoculated with MAP were used to manufacture yoghurt, using two different yoghurt starter cultures. Five commercial fermented milk products were inoculated with MAP. Two different MAP strains were studied. The survival of MAP in all products was monitored by culture over a 6-week storage period at 6°C. In yoghurt, MAP counts did not change appreciably during the storage period. Fat content and type of yoghurt starter culture had no consistent effect on the survival of MAP. In the fermented milk products, survival patterns varied but resulted in a 1·5 to ≥3·8 log reduction for the Niebüll strain and a 1·2-2·2 log reduction for the NIZO strain after 6 weeks, depending on the probiotic starters present in the product. MAP easily survived in yoghurt but MAP numbers decreased in fermented milk products containing probiotic cultures. The results contribute to the lack of knowledge on the behaviour of MAP in yoghurt and fermented milk products containing probiotic cultures. This knowledge is valuable in the context of the risk of MAP transmission to humans via yoghurt and the possible contribution of probiotic fermented milk products to the elimination of MAP. © 2011 The Authors. Journal of Applied Microbiology © 2011 The Society for Applied Microbiology.

  15. Experimental weed control of Najas marina ssp. intermedia and Elodea nuttallii in lakes using biodegradable jute matting

    Directory of Open Access Journals (Sweden)

    Markus A. Hoffmann

    2013-10-01

    Full Text Available The use of jute matting in managing the invasive aquatic macrophyte species Elodea nuttallii (Planch. H. St. John and Najas marina ssp. intermedia (Wolfg. ex Gorski Casper (Najas intermedia was studied in laboratory experiments and field trials. Four German lakes with predominant population of Najas intermedia or Elodea nuttalli were chosen for the experiment and areas between 150 and 300 m² were covered with jute textile. The effect of the matting on the growth of invasive and non-invasive macrophytes was determined through comparison with control transects. Biodegradable jute matting successfully suppressed the invasive macrophyte Najas intermedia and significantly reduced the growth of Elodea nuttalli in lakes. The results indicate that the capability of the matting to inhibit the growth of Elodea nuttallii and Najas intermedia depends on the mesh size of the jute weaving and that environmental conditions can affect its efficiency. Various indigenous species like Charales or Potamogeton pusillus L. were able to grow through the jute fabric and populate the treated areas. Until the end of the vegetation period, none of the invasive species were able to penetrate the covering and establish a stable population; in fact, in the subsequent year the jute matting affected only the spread of Najas intermedia. Jute matting proved to be an easy-to-use and cheap method to control the growth of Elodea nuttallii and Najas intermedia.

  16. Antioxidant and antimicrobial activities of essential oils obtained from oregano (Origanum vulgare ssp. hirtum) by using different extraction methods.

    Science.gov (United States)

    Karakaya, Sibel; El, Sedef Nehir; Karagözlü, Nural; Sahin, Serpil

    2011-06-01

    In this study, antioxidant and antimicrobial activities of essential oils obtained from oregano (Origanum vulgare ssp. hirtum) were determined by using solvent-free microwave extraction (SFME), supercritical fluid extraction, and conventional hydrodistillation (CH) methods. The inhibitory effects on the 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) radical of essential oils obtained from oregano by using SFME and CH were similar. However, essential oil extracted by CH showed greater (2.69 μmol/μL of oil) Trolox equivalent antioxidant capacity (TEAC) than oregano oils obtained by SFME (P oregano essential oils obtained by SFME at different microwave power levels were found to be similar and ranged from 0.72 to 0.84 μmol/μL of oil. Essential oils obtained by CH and SFME at different microwave powers inhibited the survival of Listeria monocytogenes, Salmonella typhimurium, and Escherichia coli O157:H7, whereas survival of Staphylococcus aureus was not influenced. In addition, oregano oil obtained by SFME at 40% power level did not show any inhibitory effect on E. coli O157:H7.

  17. The Dynamic Growth Exhibition and Accumulation of Cadmium of Pak Choi (Brassica campestris L. ssp. chinensis Grown in Contaminated Soils

    Directory of Open Access Journals (Sweden)

    Hung-Yu Lai

    2013-10-01

    Full Text Available The accumulation of heavy metals, especially cadmium (Cd, in leafy vegetables was compared with other vegetables. Pak choi (Brassica campestris L. ssp. chinensis is a leafy vegetable consumed in Taiwan and its safety for consumption after growing in contaminated soils is a public concern. A pot experiment (50 days was conducted to understand the dynamic accumulation of Cd by pak choi grown in artificially contaminated soils. The edible parts of pak choi were sampled and analyzed every 2–3 days. The dry weight (DW of pak choi was an exponential function of leaf length, leaf width, and chlorophyll content. The accumulation of Cd increased when the soil Cd concentration was raised, but was kept at a constant level during different growth stages. Pak choi had a high bioconcentration factor (BCF = ratio of the concentration in the edible parts to that in the soils, at values of 3.5–4.0. The consumption of pak choi grown in soils contaminated at levels used in this study would result in the ingestion of impermissible amounts of Cd and could possibly have harmful effects on health.

  18. TP0262 is a modulator of promoter activity of tpr Subfamily II genes of Treponema pallidum ssp. pallidum.

    Science.gov (United States)

    Giacani, Lorenzo; Godornes, Charmie; Puray-Chavez, Maritza; Guerra-Giraldez, Cristina; Tompa, Martin; Lukehart, Sheila A; Centurion-Lara, Arturo

    2009-06-01

    Transcriptional regulation in Treponema pallidum ssp. pallidum is poorly understood, primarily because this organism cannot be cultivated in vitro or genetically manipulated. We have recently shown a phase variation mechanism controlling transcription initiation of Subfamily II tpr (T. pallidumrepeat) genes (tprE, tprG and tprJ), a group of virulence factor candidates. Furthermore, the same study suggested that additional mechanisms might influence the level of transcription of these tprs. The T. pallidum genome sequence has revealed a few open reading frames with similarity to known bacterial transcription factors, including four catabolite activator protein homologues. In this work, sequences matching the Escherichia coli cAMP receptor protein (CRP) binding motif were identified in silico upstream of tprE, tprG and tprJ. Using elecrophoretic mobility shift assay and DNaseI footprinting assay, recombinant TP0262, a T. pallidum CRP homologue, was shown to bind specifically to amplicons obtained from the tpr promoters containing putative CRP binding motifs. Using a heterologous reporter system, binding of TP0262 to these promoters was shown to either increase (tprE and tprJ) or decrease (tprG) tpr promoter activity. This is the first characterization of a T. pallidum transcriptional modulator that influences tpr promoter activity.

  19. Influence of stand density and soil treatment on the Spanish Black Pine (Pinus nigra Arn. ssp. Salzmannii) regeneration in Spain

    Energy Technology Data Exchange (ETDEWEB)

    Cerro Barja, A. del; Lucas-Borja, M. E.; Martinez Garcia, E.; Lopez Serrano, F. R.; Andres Abellan, M.; Garcia Morote, F. A.; Navarro Lopez, R.

    2009-07-01

    Satisfactory results relating to the natural regeneration of the Spanish black pine (Pinus nigra Arn ssp. salzmannii) is generally difficult to achieve. The natural regeneration of this pine was studied comparing two types of soil treatment and various over story densities in six experimental forests. These studies were conducted from 1999 to 2002 and seed rain and germination, as well as seedling survival were observed in a number of specific plots: Brushing, scalping and control plots. In addition various over story densities were used (measured as base area m2/ha). Soil and air temperature together with soil moisture were continuously recorded throughout this summer period. The results showed that seed germination was higher in plots using the scalping technique, as opposed to the brushed or controlled plots. The best seedling survival percentage was found in scalped plots together with a larger basal area. It was also found that seedling survival was lower during the first year than during the second one. The results have practical implications for management of Spanish black pine forests as well as valuable information which could improve the conditions for regeneration. (Author) 82 refs.

  20. The maize (Zea mays ssp. mays var. B73 genome encodes 33 members of the purple acid phosphatase gene family

    Directory of Open Access Journals (Sweden)

    Eliécer eGonzález Muñoz

    2015-05-01

    Full Text Available Purple acid phosphatases (PAPs play an important role in plant phosphorus nutrition, both by liberating phosphorus from organic sources in the soil and by modulating distribution within the plant throughout growth and development. Furthermore, members of the PAP protein family have been implicated in a broader role in plant mineral homeostasis, stress responses and development. We have identified 33 candidate PAP encoding gene models in the maize (Zea mays ssp. mays var. B73 reference genome. The maize Pap family includes a clear single-copy ortholog of the Arabidopsis gene AtPAP26, shown previously to encode both major intracellular and secreted acid phosphatase activities. Certain groups of PAPs present in Arabidopsis, however, are absent in maize, while the maize family contains a number of expansions, including a distinct radiation not present in Arabidopsis. Analysis of RNA-sequencing based transcriptome data revealed accumulation of maize Pap transcripts in multiple plant tissues at multiple stages of development, and increased accumulation of specific transcripts under low phosphorus availability. These data suggest the maize PAP family as a whole to have broad significance throughout the plant life cycle, while highlighting potential functional specialization of individual family members.

  1. Shelf-life extension of minimally processed and gamma irradiated red beet (Beta vulgaris ssp. vulgaris L.), Cv. early wonder

    Energy Technology Data Exchange (ETDEWEB)

    Hernandes, Nilber Kenup; Vital, Helio de Carvalho [Centro Tecnologico do Exercito (CTEx), Rio de Janeiro, RJ (Brazil). Div. de Defesa Quimica, Biologica e Nuclear (DDQBN)]. E-mail: nilberkenup@ctex.eb.br; vital@ctex.eb.br; Coneglian, Regina Celi Cavestre [Universidade Federal Rural do Rio de Janeiro (UFRRJ), Seropedica, Rio de Janeiro, RJ (Brazil). Inst.de Agronomia. Dept. de Fitotecnia]. E-mail: rccconeg@ufrrj.br; Godoy, Ronoel Luiz de Oliveira [EMBRAPA Agroindustria de Alimentos, Rio de Janeiro, RJ (Brazil)]. E-mail: ronoel@ctaa.embrapa.br

    2007-07-01

    This work investigated the effects of gamma irradiation on the shelf-life extension and safety of minimally processed red beet (Beta vulgaris ssp. vulgaris L.) by performing microbiological, chemical and sensory analyses. Red beets were harvested 73 days after transplanting and their tuberous parts were minimally processed and separated in two groups: control (non-irradiated) and irradiated (0.5, 1.0 and 1.5 kGy). Tests for Salmonella sp., total and fecal coliforms, total count of aerobic mesophilic and lactic-acid bacteria were performed during the 21-day storage at 8 deg C. They indicated that the samples irradiated with 1.0 and 1.5 kGy remained in good conditions throughout storage while the unirradiated samples did not last 7 days. Chemical analyses indicated that the concentrations of vitamins B1 and B2 were not affected by irradiation. In contrast the amounts of fructose and glucose increased during storage while the one for sucrose decreased. In addition four series of sensory evaluations including appearance and aroma indicated that the samples irradiated with 1.0 and 1.5 kGy remained good for consumption for 20 days. Therefore it was concluded that the use of the doses of 1.0 and 1.5 kGy produced the best effects on the conservation of the samples without harming the sensory characteristics and nutritional constituents tested. (author)

  2. Characteristic of phenolic compound and antioxidant activity of fermented broccoli (Brassica oleracea L. ssp.) beverage by lactic acid bacteria (LAB)

    Science.gov (United States)

    Maryati, Yati; Susilowati, Agustine; Melanie, Hakiki; Lotulung, Puspa D.

    2017-01-01

    Broccoli (Brassica oleracea L. ssp.) has a relatively high nutrient content, especially as a source of vitamins, minerals and fiber and contain bioactive compounds that act as antioxidants. In order to increase the nutritional value and innovate new products, fermentation process involving rich-antioxidants lactic acid bacteria (LAB) was done. The aim of this study is to determine the content of bioactive components, such as total polyphenols, total acid and antioxidant activity of the mixed culture of LAB (L. bulgaricus, S. thermophulus, L. acidophilus, Bd. bifidum)-fermented broccoli extracts. Ratio of fermented broccoli extract and concentration of starter cultureLAB was varied in the range of 5, 10, 15 and 20% (v/v), and the alterations of characteristics of the fermented broccoli extract, before and after fermentation (0 and 24 hours), were evaluated. The results showed that fermentation functional beverage broccoli with different concentrations of LAB cultures affect the antioxidant activity, total polyphenols, total acid and total cell of LAB generated. The optimum conditions obtained for the highest antioxidant activity of 6.74%, at aculture concentration of 20% during fermentation time of 24 h with a pH value of 4.29, total sugar of 10.89%, total acids of 0.97%, total polyphenols of 0.076%, and total LAB of 13.02 + 0.05 log cfu /ml.

  3. The fate of W chromosomes in hybrids between wild silkmoths, Samia cynthia ssp.: no role in sex determination and reproduction.

    Science.gov (United States)

    Yoshido, A; Marec, F; Sahara, K

    2016-05-01

    Moths and butterflies (Lepidoptera) have sex chromosome systems with female heterogamety (WZ/ZZ or derived variants). The maternally inherited W chromosome is known to determine female sex in the silkworm, Bombyx mori. However, little is known about the role of W chromosome in other lepidopteran species. Here we describe two forms of the W chromosome, W and neo-W, that are transmitted to both sexes in offspring of hybrids from reciprocal crosses between subspecies of wild silkmoths, Samia cynthia. We performed crosses between S. c. pryeri (2n=28, WZ/ZZ) and S. c. walkeri (2n=26, neo-Wneo-Z/neo-Zneo-Z) and examined fitness and sex chromosome constitution in their hybrids. The F1 hybrids of both reciprocal crosses had reduced fertility. Fluorescence in situ hybridization revealed not only the expected sex chromosome constitutions in the backcross and F2 hybrids of both sexes but also females without the W (or neo-W) chromosome and males carrying the W (or neo-W) chromosome. Furthermore, crosses between the F2 hybrids revealed no association between the presence or absence of W (or neo-W) chromosome and variations in the hatchability of their eggs. Our results clearly suggest that the W (or neo-W) chromosome of S. cynthia ssp. plays no role in sex determination and reproduction, and thus does not contribute to the formation of reproductive barriers between different subspecies.

  4. Chemical composition and antimicrobial activity of the essential oils of Lavandula stoechas L. ssp. stoechas growing wild in Turkey.

    Science.gov (United States)

    Kirmizibekmez, Hasan; Demirci, Betül; Yeşilada, Erdem; Başer, K Hüsnü Can; Demirci, Fatih

    2009-07-01

    The chemical compositions of the essential oils obtained by hydrodistillation from the dried leaves and flowers of Lavandula stoechas L. ssp. stoechas were separately identified by GC-FID and GC-MS analyses. The main components were alpha-fenchone (41.9 +/- 1.2%), 1,8-cineole (15.6 +/- 0.8%), camphor (12.1 +/- 0.5%), and viridiflorol (4.1 +/- 0.4%) in the leaves; and alpha-fenchone (39.2 +/- 0.9%), myrtenyl acetate (9.5 +/- 0.4%), alpha-pinene (6.1 +/- 0.09%), camphor (5.9 +/- 0.05%) and 1,8-cineole (3.8 +/- 0.1%) in the flowers. Overall, 55 and 66 constituents were identified in the leaf and flower essential oils representing more than 90% and 94% of the total, respectively. In addition, the essential oils were evaluated for their antibacterial and anticandidal activities by broth microdilution. The flower essential oil was found to be relatively more active than the leaf oil towards the tested pathogenic microorganisms. Methicillin-resistant Staphylococcus aureus was more susceptible to the flower oil (MIC = 31.2 microg/mL). The oils, evaluated for their free radical scavenging activity using a TLC-DPPH assay, were inactive at a concentration of 2 mg/mL.

  5. Phenotype definition is a main point in genome-wide association studies for bovine Mycobacterium avium ssp. paratuberculosis infection status.

    Science.gov (United States)

    Küpper, J; Brandt, H; Donat, K; Erhardt, G

    2014-10-01

    Paratuberculosis caused by Mycobacterium avium ssp. paratuberculosis (MAP) causes economic losses and is present in dairy herds worldwide. Different studies used different diagnostic tests to detect infection status and are the basis of genome-wide association (GWA) studies with inconsistent results. Therefore, the aim of this study was to identify and compare genomic regions associated with MAP susceptibility in the same cohort of cattle using different diagnostic tests. The GWA study was performed in German Holsteins within a case-control assay using 305 cows tested for MAP by fecal culture and additional with four different commercial ELISA-tests. Genotyping was performed with the Illumina Bovine SNP50 BeadChip. The results using fecal culture or ELISA test led to the identification of different genetic loci. Two single-nucleotide polymorphisms showed significant association with the ELISA-status. However, no significant association for MAP infection could be confirmed. Our results show that the definition of the MAP-phenotype has an important impact on the outcome of GWA studies for paratuberculosis.

  6. Foraging leaf-cutting ants learn to reject Vitis vinifera ssp. vinifera plants that emit herbivore-induced volatiles.

    Science.gov (United States)

    Thiele, Theresa; Kost, Christian; Roces, Flavio; Wirth, Rainer

    2014-06-01

    Leaf-cutting ants (LCAs) are dominant herbivores of the Neotropics, as well as economically important pests. Their foraging ecology and patterns/mechanisms of food selection have received considerable attention. Recently, it has been documented that LCAs exhibit a delayed rejection of previously accepted food plants following treatment with a fungicide that makes the plants unsuitable as substrate for their symbiotic fungus. Here, we investigated whether LCAs similarly reject plants with induced chemical defenses, by combining analysis of volatile emissions with dual-choice bioassays that used LCA subcolonies (Atta sexdens L.). On seven consecutive days, foraging ants were given the choice between leaf disks from untreated control plants and test plants of Vitis vinifera ssp. vinifera L. treated with the phytohormone jasmonic acid (JA) to mimic herbivore attack. Chemical analysis revealed the emission of a characteristic set of herbivore-induced volatile organic compounds (VOC) from JA-induced plants. Dual-choice experiments indicated that workers did not show any preference initially, but that they avoided JA-treated plants from day five onwards. Our finding that A. sexdens foragers learn to avoid VOC-emitting plants, which are likely detrimental to their symbiotic fungus, represents the first evidence for avoidance learning in attine ants toward plants with induced defenses.

  7. The maize (Zea mays ssp. mays var. B73) genome encodes 33 members of the purple acid phosphatase family.

    Science.gov (United States)

    González-Muñoz, Eliécer; Avendaño-Vázquez, Aida-Odette; Montes, Ricardo A Chávez; de Folter, Stefan; Andrés-Hernández, Liliana; Abreu-Goodger, Cei; Sawers, Ruairidh J H

    2015-01-01

    Purple acid phosphatases (PAPs) play an important role in plant phosphorus nutrition, both by liberating phosphorus from organic sources in the soil and by modulating distribution within the plant throughout growth and development. Furthermore, members of the PAP protein family have been implicated in a broader role in plant mineral homeostasis, stress responses and development. We have identified 33 candidate PAP encoding gene models in the maize (Zea mays ssp. mays var. B73) reference genome. The maize Pap family includes a clear single-copy ortholog of the Arabidopsis gene AtPAP26, shown previously to encode both major intracellular and secreted acid phosphatase activities. Certain groups of PAPs present in Arabidopsis, however, are absent in maize, while the maize family contains a number of expansions, including a distinct radiation not present in Arabidopsis. Analysis of RNA-sequencing based transcriptome data revealed accumulation of maize Pap transcripts in multiple plant tissues at multiple stages of development, and increased accumulation of specific transcripts under low phosphorus availability. These data suggest the maize PAP family as a whole to have broad significance throughout the plant life cycle, while highlighting potential functional specialization of individual family members.

  8. Genetic Variation in Triticum turgidum L.ssp.turgidum Landraces from China Assessed by EST-SSR Markers

    Institute of Scientific and Technical Information of China (English)

    LI Wei; DONG Pan; WEI Yu-ming; CHENG Guo-yue; ZHENG You-liang

    2008-01-01

    It was helpful for the wheat improvement to evaluate the genetic resources of Triticum turgidum L.ssp.turgidum landraces.In this study,68 turgidum landraces accessions,belonging to four geographic populations in China,were investigated by using EST-SSR markers.A total of 63 alleles were detected on 22 EST-SSR loci,and the number of alleles on each locus ranged from 1 to 5,with an average of 2.9.The results of the analysis of molecular variance (AMOVA)indicated that 92.5% of the total variations was attributed to the genetic variations within population,whereas only 7.5%variations among populations.Although the four populations had similar genetic diversity parameters,Sichuan population was yet distinguished from other populations when comparing the population samples in pairs.Significant correlations were detected by the statistic analysis among six genetic diversity parameters among each other.The selection difference between heterozygosty and homozygosty was also observed among different EST-SSR locus.The genetic similarity (GS)ranged from 0.18 to 0.98,with the mean of 0.72,and all accessions could be clustered into 7 groups.The dendrogram suggested that the genetic relationships among turgidum accessions evaluated by EST-SSR markers were unrelated to their geographic distributions.These results implied that turgidum landraces from China had the unique characters of genetic diversity.

  9. Further molecular evidence for the Hordeum vulgare ssp. spontaneum in Tibet as ultimate progenitor of Chinese cultivated barley

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    106 accessions of Tibetan wild barley, including 50 accessions of the two-rowed wild barley Hordeum vulgare ssp. spontaneum(HS), 27 accessions of the six-rowed bottle-shaped wild barley H. lagunculiforme(HL) and 29 accessions of the six-rowed wild barley H. agriocrithon(HA) that separately represent different agrigeographical regions of Tibet, were used to study the genetic diversity and genetic differentiation using SSR markers selected from seven barley linkage groups. 229 allelic variants were identified with an average of 7.6 alleles/locus. The average of total number of alleles per locus in HA(6.4) is much higher than that in HS(3.9) and HL(3.4). The genetic diversity and its standard deviation among the three subspecies were in the order of HS>HL>HA. Very significant genetic differentiation was observed among the three subspecies of wild barley. Comparisons of the results from this and previous studies showed a strong Oriental-Occidental differentiation of barley, and that Shannan region of Tibet might be the center of origin of the Tibetan two-rowed wild barley, thus supporting not only the hypothesis of a mono-phyletic origin of cultivated barley but also the proposition that the Tibetan two-rowed wild barley as ultimate progenitor of Chinese cultivated barley.

  10. Ogura-CMS in Chinese cabbage (Brassica rapa ssp. pekinensis) causes delayed expression of many nuclear genes.

    Science.gov (United States)

    Dong, Xiangshu; Kim, Wan Kyu; Lim, Yong-Pyo; Kim, Yeon-Ki; Hur, Yoonkang

    2013-02-01

    We investigated the mechanism regulating cytoplasmic male sterility (CMS) in Brassica rapa ssp. pekinensis using floral bud transcriptome analyses of Ogura-CMS Chinese cabbage and its maintainer line in B. rapa 300-K oligomeric probe (Br300K) microarrays. Ogura-CMS Chinese cabbage produced few and infertile pollen grains on indehiscent anthers. Compared to the maintainer line, CMS plants had shorter filaments and plant growth, and delayed flowering and pollen development. In microarray analysis, 4646 genes showed different expression, depending on floral bud size, between Ogura-CMS and its maintainer line. We found 108 and 62 genes specifically expressed in Ogura-CMS and its maintainer line, respectively. Ogura-CMS line-specific genes included stress-related, redox-related, and B. rapa novel genes. In the maintainer line, genes related to pollen coat and germination were specifically expressed in floral buds longer than 3mm, suggesting insufficient expression of these genes in Ogura-CMS is directly related to dysfunctional pollen. In addition, many nuclear genes associated with auxin response, ATP synthesis, pollen development and stress response had delayed expression in Ogura-CMS plants compared to the maintainer line, which is consistent with the delay in growth and development of Ogura-CMS plants. Delayed expression may reduce pollen grain production and/or cause sterility, implying that mitochondrial, retrograde signaling delays nuclear gene expression.

  11. Virulent and Vaccine Strains of Streptococcus equi ssp. zooepidemicus Have Different Influences on Phagocytosis and Cytokine Secretion of Macrophages.

    Science.gov (United States)

    Jie, Peng; Zhe, Ma; Chengwei, Hua; Huixing, Lin; Hui, Zhang; Chengping, Lu; Hongjie, Fan

    2017-01-06

    Swine streptococcosis is a significant threat to the Chinese pig industry, and Streptococcus equi ssp. zooepidemicus (SEZ) is one of the major pathogens. SEZ ATCC35246 is a classical virulent strain, while SEZ ST171 is a Chinese attenuated vaccine strain. In this study, we employed stable isotope labeling by amino acids in cell culture and liquid chromatography-mass spectrometry (LC-MS) to determine the differential response of macrophages to infection by these two strains. Eighty-seven upregulated proteins and 135 downregulated proteins were identified. The proteomic results were verified by real-time polymerase chain reaction for 10 chosen genes and Western blotting for three proteins. All differentially abundant proteins were analyzed for their Gene Ontology and Kyoto Encyclopedia of Genes and Genomes annotations. Certain downregulated proteins were associated with immunity functions, and the upregulated proteins were related to cytomembrane and cytoskeleton regulation. The phagocytosis rate and cytokine genes transcription in Raw264.7 cells during SEZ ATCC35246 and ST171 infection were detected to confirm the bioinformatics results. These results showed that different effects on macrophage phagocytosis and cytokine expression might explain the different phenotypes of SEZ ATCC35246 and ST171 infection. This research provided clues to the mechanisms of host immunity responses to SEZ ST171and SEZ ATCC35246, which could identify potential therapy and vaccine development targets.

  12. Overcoming the production limitations of Photorhabdus temperata ssp. temperata strain K122 bioinsecticides in low-cost medium.

    Science.gov (United States)

    Jallouli, Wafa; Jaoua, Samir; Zouari, Nabil

    2011-10-01

    For low-cost production of Photorhabdus temperata ssp. temperata strain K122 bioinsecticide, a cheap complex medium was optimized. Diluted seawater was used as the source of micronutrients, especially sodium chloride, involved in the improvement of cell density, culturability and oral toxicity of the bacterium P. temperata against Ephestia kuehniella larvae. Thus, the new formulated medium was composed only of 10 g/l of soya bean meal, used as the carbon and nitrogen main source, mixed in sevenfold diluted seawater. At such conditions, several limitations of P. temperata bioinsecticide productions were shown to be overcome. The appearance of variants small colony polymorphism was completely avoided. Thus, the strain K122 was maintained at the primary form even after prolonged incubation. Moreover, the viable but nonculturable state was partially overcome, since the ability of P. temperata cells to form colonies on the solid medium was prolonged until 78 h of incubation. In addition, when cultured in the complex medium, P. temperata cells were produced at high cell density of 12 × 10(8) cells/ml and exhibited 81.48% improvement of oral toxicity compared to those produced in the optimized medium. With such medium, the large-scale bioinsecticides production into 3-l fully controlled fermenter improved the total cell counts, CFU counts and oral toxicity by 20, 5.81 and 16.73%, respectively. This should contribute to a significant reduction of production cost of highly potent P. temperata strain K122 cells, useful as a bioinsecticide.

  13. [Outbreak of subclinical mastitis due to beta hemolytic group L streptococci (S. dysgalactiae ssp. equisimilis) in an Austrian dairy herd].

    Science.gov (United States)

    Baumgartner, Martina; Giffinger, Friederike; Hoppe, Jan Christoph; Spergser, Joachim

    2011-01-01

    This study is reporting an outbreak of subclinical mastitis due to beta-hemolytic group L streptococci in an Austrian dairy herd with a history of high somatic cell count. At the first survey 16 of 33 lactating cows (28 quarters of 132) were cultured positive for beta-hemolytic, CAMP and esculin negative cocci that grew on Columbia blood agar with small grey catalase negative colonies. With the commercial API 20 Strep system (bioMerieux, F) isolates were classified as members of streptococci group L. All tested strains (eight of 28) produced acid from ribose, lactose, trehalose, amidon and glycogen; they hydrolysed hippurate and showed beta-glucuronidase, beta-galactosidase, alkaline phosphatase, leucinaminopeptidase and arginindehydrolase activity. Isolates were sensitive to bacitracin but resistant to tetracycline. Using phenotypic characterisation as well as sequence analysis of the 16S-23S intergenic spacer region of a representative strain, recovered isolates were identified as Streptococcus (S.) dysgalactiae ssp. equisimilis. Mastitis was characterized by normal milk secretions and absence of clinical abnormalities but high elevations of somatic cell count. Based on the characteristics of the strains and on the observations during the first herd survey, contagious transmission during milking as a result of poor milking hygiene was assumed. The mastitis was controlled through implementation of a strict hygiene protocol including use of single-use udder towels, post milking teat desinfection and cluster disinfection between milking cows in combination with antibiotic treatment of infected udders.

  14. Lactobacillus delbrueckii ssp. bulgaricus B-30892 can inhibit cytotoxic effects and adhesion of pathogenic Clostridium difficile to Caco-2 cells

    Directory of Open Access Journals (Sweden)

    Banerjee Pratik

    2009-04-01

    Full Text Available Abstract Background Probiotic microorganisms are receiving increasing interest for use in the prevention, treatment, or dietary management of certain diseases, including antibiotic-associated diarrhea (AAD. Clostridium difficile is the most common cause of AAD and the resulting C. difficile – mediated infection (CDI, is potentially deadly. C. difficile associated diarrhea (CDAD is manifested by severe inflammation and colitis, mostly due to the release of two exotoxins by C. difficile causing destruction of epithelial cells in the intestine. The aim of this study was to determine the effect of probiotic bacteria Lactobacillus delbrueckii ssp. bulgaricus B-30892 (LDB B-30892 on C. difficile-mediated cytotoxicity using Caco-2 cells as a model. Methods Experiments were carried out to test if the cytotoxicity induced by C. difficile-conditioned-medium on Caco-2 cells can be altered by cell-free supernatant (CFS from LDB B-30892 in different dilutions (1:2 to 1:2048. In a similar experimental setup, comparative evaluations of other probiotic strains were made by contrasting the results from these strains with the results from LDB B-30892, specifically the ability to affect C. difficile induced cytotoxicity on Caco-2 monolayers. Adhesion assays followed by quantitative analysis by Giemsa staining were conducted to test if the CFSs from LDB B-30892 and other probiotic test strains have the capability to alter the adhesion of C. difficile to the Caco-2 monolayer. Experiments were also performed to evaluate if LDB B-30892 or its released components have any bactericidal effect on C. difficile. Results and discussion Co-culturing of LDB B-30892 with C. difficile inhibited the C. difficile-mediated cytotoxicity on Caco-2 cells. When CFS from LDB B-30892-C. difficile co-culture was administered (up to a dilution of 1:16 on Caco-2 monolayer, there were no signs of cytotoxicity. When CFS from separately grown LDB B-30892 was mixed with the cell-free toxin

  15. Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus.

    Science.gov (United States)

    Shao, Yuyu; Wang, Zhaoxia; Bao, Qiuhua; Zhang, Heping

    2016-12-01

    In this study, a combination of propidium monoazide (PMA) and quantitative real-time PCR (qPCR) was used to develop a method to determine the viability of cells of Lactobacillus delbrueckii ssp. bulgaricus ND02 (L. bulgaricus) that may have entered into a viable but nonculturable state. This can happen due to its susceptibility to cold shock during lyophilization and storage. Propidium monoazide concentration, PMA incubation time, and light exposure time were optimized to fully exploit the PMA-qPCR approach to accurately assess the total number of living L. bulgaricus ND02. Although PMA has little influence on living cells, when concentrations of PMA were higher than 30μg/mL the number of PCR-positive living bacteria decreased from 10(6) to 10(5) cfu/mL in comparison with qPCR enumeration. Mixtures of living and dead cells were used as method verification samples for enumeration by PMA-qPCR, demonstrating that this method was feasible and effective for distinguishing living cells of L. bulgaricus when mixed with a known number of dead cells. We suggest that several conditions need to be studied further before PMA-qPCR methods can be accurately used to distinguish living from dead cells for enumeration under more realistic sampling situations. However, this research provides a rapid way to enumerate living cells of L. bulgaricus and could be used to optimize selection of cryoprotectants in the lyophilization process and develop technologies for high cell density cultivation and optimal freeze-drying processes.

  16. Using small-scale studies to prioritize threats and guide recovery of a rare hemiparasitic plant: Cordylanthus rigidus ssp. littoralis.

    Directory of Open Access Journals (Sweden)

    Sean M Watts

    Full Text Available BACKGROUND: Recovering endangered species would benefit from identifying and ranking of the factors that threaten them. Simply managing for multiple positive influences will often aid in recovery; however, the relative impacts of multiple threats and/or interactions among them are not always predictable. We used a series of experiments and quantitative observational studies to examine the importance of five potential limiting factors to the abundance of a state-listed endangered hemiparasitic annual forb, Cordylanthus rigidus ssp. littoralis (C.r.l., California, USA: host availability, mammalian herbivores, insect seed predators, fire suppression, and exotic species. While this initial assessment is certainly not a complete list, these factors stem from direct observation and can inform provisional recommendations for management and further research. METHODOLOGY AND PRINCIPAL FINDINGS: Studies were conducted at five sites and included assessments of the influence of host availability, exotic species, exclusion of mammalian herbivores and insect seed predators on C.r.l. productivity, and simulated effects of fire on seed germination. C.r.l. was limited by multiple threats: individuals with access to host species produced up to three times more inflorescences than those lacking hosts, mammalian herbivory reduced C.r.l. size and fecundity by more than 50% and moth larvae reduced seed production by up to 40%. Litter deposition and competition from exotic plant species also appears to work in conjunction with other factors to limit C.r.l. throughout its life cycle. CONCLUSIONS AND SIGNIFICANCE: The work reported here highlights the contribution that a series of small-scale studies can make to conservation and restoration. Taken as a whole, the results can be used immediately to inform current management and species recovery strategies. Recovery of C.r.l. will require management that addresses competition with exotic plant species, herbivore pressure

  17. Using small-scale studies to prioritize threats and guide recovery of a rare hemiparasitic plant: Cordylanthus rigidus ssp. littoralis.

    Science.gov (United States)

    Watts, Sean M; Uhl, Melissa M; Maurano, Stephen P; Nuccio, Erin E

    2010-01-26

    Recovering endangered species would benefit from identifying and ranking of the factors that threaten them. Simply managing for multiple positive influences will often aid in recovery; however, the relative impacts of multiple threats and/or interactions among them are not always predictable. We used a series of experiments and quantitative observational studies to examine the importance of five potential limiting factors to the abundance of a state-listed endangered hemiparasitic annual forb, Cordylanthus rigidus ssp. littoralis (C.r.l., California, USA): host availability, mammalian herbivores, insect seed predators, fire suppression, and exotic species. While this initial assessment is certainly not a complete list, these factors stem from direct observation and can inform provisional recommendations for management and further research. Studies were conducted at five sites and included assessments of the influence of host availability, exotic species, exclusion of mammalian herbivores and insect seed predators on C.r.l. productivity, and simulated effects of fire on seed germination. C.r.l. was limited by multiple threats: individuals with access to host species produced up to three times more inflorescences than those lacking hosts, mammalian herbivory reduced C.r.l. size and fecundity by more than 50% and moth larvae reduced seed production by up to 40%. Litter deposition and competition from exotic plant species also appears to work in conjunction with other factors to limit C.r.l. throughout its life cycle. The work reported here highlights the contribution that a series of small-scale studies can make to conservation and restoration. Taken as a whole, the results can be used immediately to inform current management and species recovery strategies. Recovery of C.r.l. will require management that addresses competition with exotic plant species, herbivore pressure, and availability of preferred host species.

  18. Endothelium-dependent induction of vasorelaxation by Melissa officinalis L. ssp. officinalis in rat isolated thoracic aorta.

    Science.gov (United States)

    Ersoy, S; Orhan, I; Turan, N N; Sahan, G; Ark, M; Tosun, F

    2008-12-01

    In the current study, vasorelaxant effect produced by the aqueous extract of Melissa officinalis L. ssp. officinalis (MOO) (Lamiaceae) and its possible mechanism in isolated rat aortic rings precontracted with phenylephrine were examined. In the first series of experiments, effect of MOO on the baseline and phenylephrine (10(-5)M) precontracted arteries was investigated, while in the second group of experiments, endothelium intact or endothelium denuded effect was determined. The agents used were N(omega)-nitro-L-arginine (L-NAME), an irreversible inhibitor of nitric oxide (NO) synthase, indomethacin (10 microM), a cyclooxygenase (COX) inhibitor, and glibenclamide (10 microM), an ATP-sensitive potassium channel blocker. The extract was found to exert a vasorelaxant effect and rosmarinic acid quantity, the characteristic compound of the plant, was analyzed by reversed-phase high-performance liquid chromatography (18.75%), and was further confirmed by LC-MS analysis giving a prominent [M(+1)] molecular ion peak at m/z 365. Total phenol amount in the extract was determined using Folin-Ciocalteau reagent (0.284 mg/mg extract). Vasorelaxant effect of the extract was entirely dependent on the presence of endothelium and was abolished by pretreatment with L-NAME, whereas pretreatment with indomethacin and glibenclamide reduced the relaxation to a minor extent. Rosmarinic acid was also tested in the same manner as the extract and was found to exert vasorelaxant effect. These results suggest that the aqueous extract of MOO vasodilates via nitric oxide pathway with the possible involvement of prostacycline and endothelium-derived hyperpolarizing factor (EDHF) pathways as well.

  19. Genome-Wide Identification and Characterization of BrrTCP Transcription Factors in Brassica rapa ssp. rapa

    Directory of Open Access Journals (Sweden)

    Jiancan Du

    2017-09-01

    Full Text Available The teosinte branched1/cycloidea/proliferating cell factor (TCP gene family is a plant-specific transcription factor that participates in the control of plant development by regulating cell proliferation. However, no report is currently available about this gene family in turnips (Brassica rapa ssp. rapa. In this study, a genome-wide analysis of TCP genes was performed in turnips. Thirty-nine TCP genes in turnip genome were identified and distributed on 10 chromosomes. Phylogenetic analysis clearly showed that the family was classified as two clades: class I and class II. Gene structure and conserved motif analysis showed that the same clade genes have similar gene structures and conserved motifs. The expression profiles of 39 TCP genes were determined through quantitative real-time PCR. Most CIN-type BrrTCP genes were highly expressed in leaf. The members of CYC/TB1 subclade are highly expressed in flower bud and weakly expressed in root. By contrast, class I clade showed more widespread but less tissue-specific expression patterns. Yeast two-hybrid data show that BrrTCP proteins preferentially formed heterodimers. The function of BrrTCP2 was confirmed through ectopic expression of BrrTCP2 in wild-type and loss-of-function ortholog mutant of Arabidopsis. Overexpression of BrrTCP2 in wild-type Arabidopsis resulted in the diminished leaf size. Overexpression of BrrTCP2 in triple mutants of tcp2/4/10 restored the leaf phenotype of tcp2/4/10 to the phenotype of wild type. The comprehensive analysis of turnip TCP gene family provided the foundation to further study the roles of TCP genes in turnips.

  20. Inhibition of Clostridium tyrobutyricum in Vidiago cheese by Lactococcus lactis ssp. lactis IPLA 729, a nisin Z producer.

    Science.gov (United States)

    Rilla, Natalia; Martínez, Beatriz; Delgado, Teresa; Rodríguez, Ana

    2003-08-15

    Lactococcus lactis ssp. lactis IPLA 729 is a nisin Z producer isolated from raw milk cheese able to grow and produce nisin Z in milk. The ability of this strain to inhibit the growth of Clostridium tyrobutyricum CECT 4011, a late blowing agent, in Vidiago cheese, a semi-hard farmhouse variety, manufactured in Asturias, Northern Spain, was investigated. For control purposes, cheeses were manufactured with the mesophilic mixed starter IPLA-001. In experimental cheeses, the nisin-producing strain L. lactis IPLA 729 was combined with this starter. Nisin Z activity reached a concentration of 1600 AU/ml in 1-day cheeses and this level was maintained until 15 days of ripening. Furthermore, to compare the inhibitory activity of the nisin-producing strain to nitrate, cheeses were also manufactured with a commercial starter culture and potassium nitrate as anti-blowing agent was added in accordance with Vidiago's cheesemakers. The control, experimental and commercial cheeses were contaminated with C. tyrobutyricum CECT 4011. The composition of the three different cheeses showed only slight differences with respect to total solids, protein and fat, although control and experimental cheeses showed a richer flavour-compound profile than commercial cheeses. The level of the spoilage strain C. tyrobutyricum CECT 4011 decreased from 1.2x10(6) to 1.3x10(3) cfu/g during ripening in presence of the nisin Z producer, while it increased to 1.99x10(9) cfu/g in control cheeses and to 3.5x10(7) cfu/g in commercial cheeses.

  1. Growth and acid production of Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842 in the fermentation of algal carcass.

    Science.gov (United States)

    Li, C; Zhang, G F; Mao, X; Wang, J Y; Duan, C Y; Wang, Z J; Liu, L B

    2016-06-01

    Algal carcass is a low-value byproduct of algae after its conversion to biodiesel. Dried algal carcass is rich in protein, carbohydrate, and multiple amino acids, and it is typically well suited for growth and acid production of lactic acid bacteria. In this study, Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842 was used to ferment different algal carcass media (ACM), including 2% ACM, 2% ACM with 1.9% glucose (ACM-G), and 2% ACM with 1.9% glucose and 2g/L amino acid mixture (ACM-GA). Concentrations of organic acids (lactic acid and acetic acid), acetyl-CoA, and ATP were analyzed by HPLC, and activities of lactate dehydrogenase (LDH), acetokinase (ACK), pyruvate kinase (PK), and phosphofructokinase (PFK) were determined by using a chemical approach. The growth of L. bulgaricus cells in ACM-GA was close to that in the control medium (de Man, Rogosa, and Sharpe). Lactic acid and acetic acid contents were greatly reduced when L. bulgaricus cells were grown in ACM compared with the control medium. Acetyl-CoA content varied with organic acid content and was increased in cells grown in different ACM compared with the control medium. The ATP content of L. bulgaricus cells in ACM was reduced compared with that of cells grown in the control medium. Activities of PFK and ACK of L. bulgaricus cells grown in ACM were higher and those of PK and LDH were lower compared with the control. Thus, ACM rich in nutrients may serve as an excellent substrate for growth by lactic acid bacteria, and addition of appropriate amounts of glucose and amino acids can improve growth and acid production.

  2. Análisis de los compuestos volátiles de la ciruela amarilla (Prunus domestica L. ssp. domestica

    Directory of Open Access Journals (Sweden)

    Yineth Ruiz

    2011-06-01

    Full Text Available El aroma de las frutas se debe a los constituyentes volátiles presentes que, aunque se encuentran en muy bajas concentraciones, contribuyen al aroma global en grados muy diversos. Se hace necesario usar técnicas de aislamiento y concentración que garanticen el análisis de una composición química semejante a la de la fruta. Este trabajo tuvo como objetivo el análisis de los compuestos volátiles de la ciruela amarilla (Prunus domestica L. ssp.domestica por el método de evaporación del aroma asistida por solvente (SAFE. Este método utiliza un equipo de destilación conectado a una bomba de alto vacío que ofrece la posibilidad de aislar rápidamente compuestos volátiles sin daño térmico en diferentes matrices alimentarias. La separación e identificación de los compuestos volátiles se realizó por cromatografía de gases-espectrometría de masas (GC-MS. Se identificaron 47 compuestos (6,55 mg/kg de pulpa de fruta, entre ellos 14 alcoholes, 8 aldehídos, 7 ésteres, 5 cetonas, 4 ácidos carboxílicos, 4 hidrocarburos aromáticos, 3 lactonas, un compuesto azufrado y una hidroxicetona; 16 de ellos se informan por primera vez. El acetato de etilo (2,88 mg/kg, etanol (1 mg/kg y ácido octanoico (0,78 mg/kg fueron los constituyentes volátiles mayoritarios de esta variedad de ciruela.

  3. Enhancement of tolerance to soft rot disease in the transgenic Chinese cabbage (Brassica rapa L. ssp. pekinensis) inbred line, Kenshin.

    Science.gov (United States)

    Vanjildorj, Enkhchimeg; Song, Seo Young; Yang, Zhi Hong; Choi, Jae Eul; Noh, Yoo Sun; Park, Suhyoung; Lim, Woo Jin; Cho, Kye Man; Yun, Han Dae; Lim, Yong Pyo

    2009-10-01

    We developed a transgenic Chinese cabbage (Brassica rapa L. ssp. pekinensis) inbred line, Kenshin, with high tolerance to soft rot disease. Tolerance was conferred by expression of N-acyl-homoserine lactonase (AHL-lactonase) in Chinese cabbage through an efficient Agrobacterium-mediated transformation method. To synthesize and express the AHL-lactonase in Chinese cabbage, the plant was transformed with the aii gene (AHL-lactonase gene from Bacillus sp. GH02) fused to the PinII signal peptide (protease inhibitor II from potato). Five transgenic lines were selected by growth on hygromycin-containing medium (3.7% transformation efficiency). Southern blot analysis showed that the transgene was stably integrated into the genome. Among these five transgenic lines, single copy number integrations were observed in four lines and a double copy number integration was observed in one transgenic line. Northern blot analysis confirmed that pinIISP-aii fusion gene was expressed in all the transgenic lines. Soft rot disease tolerance was evaluated at tissue and seedling stage. Transgenic plants showed a significantly enhanced tolerance (2-3-fold) to soft rot disease compared to wild-type plants. Thus, expression of the fusion gene pinIISP-aii reduces susceptibility to soft rot disease in Chinese cabbage. We conclude that the recombinant AHL-lactonase, encoded by aii, can effectively quench bacterial quorum-sensing and prevent bacterial population density-dependent infections. To the best of our knowledge, the present study is the first to demonstrate the transformation of Chinese cabbage inbred line Kenshin, and the first to describe the effect of the fusion gene pinIISP-aii on enhancement of soft rot disease tolerance.

  4. Tissue Culture as a Source of Replicates in Nonmodel Plants: Variation in Cold Response in Arabidopsis lyrata ssp. petraea.

    Science.gov (United States)

    Kenta, Tanaka; Edwards, Jessica E M; Butlin, Roger K; Burke, Terry; Quick, W Paul; Urwin, Peter; Davey, Matthew P

    2016-12-07

    While genotype-environment interaction is increasingly receiving attention by ecologists and evolutionary biologists, such studies need genetically homogeneous replicates-a challenging hurdle in outcrossing plants. This could be potentially overcome by using tissue culture techniques. However, plants regenerated from tissue culture may show aberrant phenotypes and "somaclonal" variation. Here, we examined somaclonal variation due to tissue culturing using the response to cold treatment of photosynthetic efficiency (chlorophyll fluorescence measurements for Fv/Fm, Fv'/Fm', and ΦPSII, representing maximum efficiency of photosynthesis for dark- and light-adapted leaves, and the actual electron transport operating efficiency, respectively, which are reliable indicators of photoinhibition and damage to the photosynthetic electron transport system). We compared this to variation among half-sibling seedlings from three different families of Arabidopsis lyrata ssp. petraea Somaclonal variation was limited, and we could detect within-family variation in change in chlorophyll fluorescence due to cold shock successfully with the help of tissue-culture derived replicates. Icelandic and Norwegian families exhibited higher chlorophyll fluorescence, suggesting higher performance after cold shock, than a Swedish family. Although the main effect of tissue culture on Fv/Fm, Fv'/Fm', and ΦPSII was small, there were significant interactions between tissue culture and family, suggesting that the effect of tissue culture is genotype-specific. Tissue-cultured plantlets were less affected by cold treatment than seedlings, but to a different extent in each family. These interactive effects, however, were comparable to, or much smaller than the single effect of family. These results suggest that tissue culture is a useful method for obtaining genetically homogenous replicates for studying genotype-environment interaction related to adaptively-relevant phenotypes, such as cold response, in

  5. Polymorphisms in the gene encoding bovine interleukin-10 receptor alpha are associated with Mycobacterium avium ssp. paratuberculosis infection status

    Directory of Open Access Journals (Sweden)

    Kelton David F

    2010-04-01

    Full Text Available Abstract Background Johne's disease is a chronic inflammatory bowel disease (IBD of ruminants caused by Mycobacterium avium ssp. paratuberculosis (MAP. Since this pathogen has been implicated in the pathogenesis of human IBDs, the goal of this study was to assess whether single nucleotide polymorphism (SNPs in several well-known candidate genes for human IBD are associated with susceptibility to MAP infection in dairy cattle. Methods The bovine candidate genes, interleukin-10 (IL10, IL10 receptor alpha/beta (IL10RA/B, transforming growth factor beta 1 (TGFB1, TGFB receptor class I/II (TGFBR1/2, and natural resistance-associated macrophage protein 1 (SLC11A1 were sequenced for SNP discovery using pooled DNA samples, and the identified SNPs were genotyped in a case-control association study comprised of 242 MAP negative and 204 MAP positive Holstein dairy cattle. Logistic regression was used to determine the association of SNPs and reconstructed haplotypes with MAP infection status. Results A total of 13 SNPs were identified. Four SNPs in IL10RA (984G > A, 1098C > T, 1269T > C, and 1302A > G were tightly linked, and showed a strong additive and dominance relationship with MAP infection status. Haplotypes AGC and AAT, containing the SNPs IL10RA 633C > A, 984G > A and 1185C > T, were associated with an elevated and reduced likelihood of positive diagnosis by serum ELISA, respectively. Conclusions SNPs in IL10RA are associated with MAP infection status in dairy cattle. The functional significance of these SNPs warrants further investigation.

  6. Tissue Culture as a Source of Replicates in Nonmodel Plants: Variation in Cold Response in Arabidopsis lyrata ssp. petraea

    Directory of Open Access Journals (Sweden)

    Tanaka Kenta

    2016-12-01

    Full Text Available While genotype–environment interaction is increasingly receiving attention by ecologists and evolutionary biologists, such studies need genetically homogeneous replicates—a challenging hurdle in outcrossing plants. This could be potentially overcome by using tissue culture techniques. However, plants regenerated from tissue culture may show aberrant phenotypes and “somaclonal” variation. Here, we examined somaclonal variation due to tissue culturing using the response to cold treatment of photosynthetic efficiency (chlorophyll fluorescence measurements for Fv/Fm, Fv′/Fm′, and ΦPSII, representing maximum efficiency of photosynthesis for dark- and light-adapted leaves, and the actual electron transport operating efficiency, respectively, which are reliable indicators of photoinhibition and damage to the photosynthetic electron transport system. We compared this to variation among half-sibling seedlings from three different families of Arabidopsis lyrata ssp. petraea. Somaclonal variation was limited, and we could detect within-family variation in change in chlorophyll fluorescence due to cold shock successfully with the help of tissue-culture derived replicates. Icelandic and Norwegian families exhibited higher chlorophyll fluorescence, suggesting higher performance after cold shock, than a Swedish family. Although the main effect of tissue culture on Fv/Fm, Fv′/Fm′, and ΦPSII was small, there were significant interactions between tissue culture and family, suggesting that the effect of tissue culture is genotype-specific. Tissue-cultured plantlets were less affected by cold treatment than seedlings, but to a different extent in each family. These interactive effects, however, were comparable to, or much smaller than the single effect of family. These results suggest that tissue culture is a useful method for obtaining genetically homogenous replicates for studying genotype–environment interaction related to adaptively

  7. Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.).

    Science.gov (United States)

    Simons, Kristin; Abate, Zewdie; Chao, Shiaoman; Zhang, Wenjun; Rouse, Matt; Jin, Yue; Elias, Elias; Dubcovsky, Jorge

    2011-02-01

    Wheat stem rust caused by Puccinia graminis f. sp. tritici, can cause significant yield losses. To combat the disease, breeders have deployed resistance genes both individually and in combinations to increase resistance durability. A new race, TTKSK (Ug99), identified in Uganda in 1999 is virulent on most of the resistance genes currently deployed, and is rapidly spreading to other regions of the world. It is therefore important to identify, map, and deploy resistance genes that are still effective against TTKSK. One of these resistance genes, Sr13, was previously assigned to the long arm of chromosome 6A, but its precise map location was not known. In this study, the genome location of Sr13 was determined in four tetraploid wheat (T. turgidum ssp. durum) mapping populations involving the TTKSK resistant varieties Kronos, Kofa, Medora and Sceptre. Our results showed that resistance was linked to common molecular markers in all four populations, suggesting that these durum lines carry the same resistance gene. Based on its chromosome location and infection types against different races of stem rust, this gene is postulated to be Sr13. Sr13 was mapped within a 1.2-2.8 cM interval (depending on the mapping population) between EST markers CD926040 and BE471213, which corresponds to a 285-kb region in rice chromosome 2, and a 3.1-Mb region in Brachypodium chromosome 3. These maps will be the foundation for developing high-density maps, identifying diagnostic markers, and positional cloning of Sr13.

  8. Inhibition of Fusarium solani Infection in Murine Keratocytes by Lactobacillus salivarius ssp. salivarius JCM1231 Culture Filtrate In Vitro.

    Science.gov (United States)

    Hu, Jianzhang; Chen, Fang; Kan, Tong; Zhuang, Hua; Zhang, Jingjin; Han, Xiaoli

    2017-06-21

    To explore the inhibitory activity of Lactobacillus salivarius ssp. salivarius JCM1231 (L. salivarius JCM1231) culture filtrate against Fusarium solani (F. solani) and its effects on murine keratocytes (MKs) infected with F. solani. L. salivarius JCM1231 was cultured in an anaerobic incubator for 24 h, and the L. salivarius culture filtrate (LSCF) was prepared .The antifungal activity of L. salivarius JCM1231 against F. solani was determined with a plate overlay assay, agar diffusion assay, and conidial germination inhibition test. The effects of temperature, pH, and proteolytic enzymes on the antifungal activity of LSCF were detected with microtiter plate-well assay and conidial germination inhibition assay. Furthermore, the effects of LSCF on MKs infected with F. solani were detected. Cell activity and apoptosis were measured using methylthiazoletetrazolium assays and flow cytometry analysis, respectively. The levels of interleukin-6 (IL-6) and tumor necrosis factor-α (TNF-α) cytokines were measured using real-time polymerase chain reactions and enzyme-linked immunosorbent assays (ELISA), and mycotoxin production was detected with high-performance liquid chromatography tandem mass spectrometry. Conidial germination and mycelia growth of F. solani were significantly inhibited by LSCF. The antifungal substances produced by L. salivarius JCM1231 were heat unstable, proteinaceous, and sensitive to proteolytic enzymes and were active within a narrow acidic pH range between 2.0 and 4.0. In the presence of 15 µg/ml of LSCF, cell activity was significantly increased, and cell apoptosis, the level of IL-6 and TNF-α expressions, and mycotoxin (zearalenone and fumonisin B1) productions were decreased significantly in MKs infected with F. solani. L. salivarius JCM1231 culture filtrate can effectively inhibit F. solani growth and protect MKs against F. solani infection.

  9. The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

    Directory of Open Access Journals (Sweden)

    James B. Pettengill

    2014-04-01

    Full Text Available Evolutionary studies of clustered regularly interspaced short palindromic repeats (CRISPRs and their associated (cas genes can provide insights into host-pathogen co-evolutionary dynamics and the frequency at which different genomic events (e.g., horizontal vs. vertical transmission occur. Within this study, we used whole genome sequence (WGS data to determine the evolutionary history and genetic diversity of CRISPR loci and cas genes among a diverse set of 427 Salmonella enterica ssp. enterica isolates representing 64 different serovars. We also evaluated the performance of CRISPR loci for typing when compared to whole genome and multilocus sequence typing (MLST approaches. We found that there was high diversity in array length within both CRISPR1 (median = 22; min = 3; max = 79 and CRISPR2 (median = 27; min = 2; max = 221. There was also much diversity within serovars (e.g., arrays differed by as many as 50 repeat-spacer units among Salmonella ser. Senftenberg isolates. Interestingly, we found that there are two general cas gene profiles that do not track phylogenetic relationships, which suggests that non-vertical transmission events have occurred frequently throughout the evolutionary history of the sampled isolates. There is also considerable variation among the ranges of pairwise distances estimated within each cas gene, which may be indicative of the strength of natural selection acting on those genes. We developed a novel clustering approach based on CRISPR spacer content, but found that typing based on CRISPRs was less accurate than the MLST-based alternative; typing based on WGS data was the most accurate. Notwithstanding cost and accessibility, we anticipate that draft genome sequencing, due to its greater discriminatory power, will eventually become routine for traceback investigations.

  10. Genetic Variation in Rhizome Lotus (Nelumbo nucifera Gaertn. ssp. nucifera) Germplasms from China Assessed by RAPD Markers

    Institute of Scientific and Technical Information of China (English)

    AN Na; GUO Hong-bo; KE Wei-dong

    2009-01-01

    To estimate genetic variation in rhizome lotus (Nelumbo nucifera Gaertn. ssp. nucifera) gcrmplasms in China, a total of 94 rhizome lotus germplasms collected from 18 provinces in China were assessed. The RAPD (randomly amplified polymorphic DNA) marker was employed. The selected 17 random primers detected 139 polymorphic alleles out of a total 207 (67.15%). Nei's gene diversity statistics and region differentiation parameters indicated that all germplasms had a relatively high level of genetic diversity with ne=1.3202, h=0.1937, I=0.2982 and the gene flow among all regions was Nm=5.5742. The UPGMA dendrogram clustered all 94 germplasms into two clusters: One contained eight commercial cultivars and major landraces, and the other included the wild and some special landraces from five regions, and the PCA analysis exhibited the similar result. Those germplasms from southwestern and eastern China had higher genetic diversity than those from the southern, northern and central China. Predominant proportion of genetic variation (95.61%) was found significant within rather than among (4.39%) regions, as revealed by AMOVA analysis. The data analysis also revealed that the genetic diversity of rhizome lotus germplasms among different regions is positively related to their geographic distances, though it is ambiguous to find the trend from the UPGMA dendrogram and the PCA analysis. A relatively high genetic diversity and gene flow resided in the root lotus germplasms; about 96% of the variation was found within region; accessions from southwest and eastern China have higher genetic diversity than those from the southern, northern and central China.

  11. Análisis de los compuestos volátiles de la ciruela amarilla (Prunus domestica L. ssp. domestica

    Directory of Open Access Journals (Sweden)

    Yineth Ruiz

    2011-01-01

    Full Text Available El aroma de las frutas se debe a los constituyentes volátiles presentes que, aunque se encuentran en muy bajas concentraciones, contribuyen al aroma global en grados muy diversos. Se hace necesario usar técnicas de aislamiento y concentración que garanticen el análisis de una composición química semejante a la de la fruta. Este trabajo tuvo como objetivo el análisis de los compuestos volátiles de la ciruela amarilla (Prunus domestica L. ssp. domestica por el método de evaporación del aroma asistida por solvente (SAFE. Este método utiliza un equipo de destilación conectado a una bomba de alto vacío que ofrece la posibilidad de aislar rápidamente compuestos volátiles sin daño térmico en diferentes matrices alimentarias. La separación e identificación de los compuestos volátiles se realizó por cromatografía de gases-espectrometría de masas (GC-MS. Se identificaron 47 compuestos (6,55 mg/kg de pulpa de fruta, entre ellos 14 alcoholes, 8 aldehídos, 7 ésteres, 5 cetonas, 4 ácidos carboxílicos, 4 hidrocarburos aromáticos, 3 lactonas, un compuesto azufrado y una hidroxicetona; 16 de ellos se informan por primera vez. El acetato de etilo (2,88 mg/kg, etanol (1 mg/kg y ácido octanoico (0,78 mg/kg fueron los constituyentes volátiles mayoritarios de esta variedad de ciruela.

  12. Phylogeography of the reticulated python (Malayopython reticulatus ssp.): Conservation implications for the worlds' most traded snake species.

    Science.gov (United States)

    Murray-Dickson, Gillian; Ghazali, Muhammad; Ogden, Rob; Brown, Rafe; Auliya, Mark

    2017-01-01

    As an important economic natural resource in Southeast Asia, reticulated pythons (Malayopython reticulatus ssp.) are primarily harvested from the wild for their skins-which are prized in the luxury leather goods industry. Trade dynamics of this CITES Appendix II listed species are complex and management approaches on the country or regional level appear obscure. Little is known about the actual geographic point-of-harvest of snakes, how genetic diversity is partitioned across the species range, how current harvest levels may affect the genetic viability of populations, and whether genetic structure could (or should) be accounted for when managing harvest quotas. As an initial survey, we use mitochondrial sequence data to define the broad-scale geographic structure of genetic diversity across a significant portion of the reticulated python's native range. Preliminary results reveal: (1) prominent phylogenetic structure across populations east and west of Huxley's modification of Wallace's line. Thirty-four haplotypes were apportioned across two geographically distinct groups, estimated to be moderately (5.2%); (2) Philippine, Bornean and Sulawesian populations appear to cluster distinctly; (3) individuals from Ambon Island suggest recent human introduction. Malayopython reticulatus is currently managed as a single taxonomic unit across Southeast Asia yet these initial results may justify special management considerations of the Philippine populations as a phylogenetically distinct unit, that warrants further examination. In Indonesia, genetic structure does not conform tightly to political boundaries and therefore we advocate the precautionary designation and use of Evolutionary Significant Units within Malayopython reticulatus, to inform and guide regional adaptive management plans.

  13. KANDUNGAN LOGAM BERAT (Pb dan Cd Pada Sawi Hijau (Brassica rapa l. Subsp. Perviridis Bailey Dan Wortel (Daucus Carrota L. Var. Sativa Hoffm YANG BEREDAR DI PASAR KOTA DENPASAR

    Directory of Open Access Journals (Sweden)

    Deni Agung Priandoko

    2013-05-01

    Full Text Available Has been doing a research about the content of heavy metals (Pb and Cdin green mustard (Brassica rapa L. subsp. Perviridis Bailey and carrot (DaucusCarrota L. Var. Sativa Hoffm that exist in the market of Denpasar city. Purposeof this research was to know the content of Pb and Cd in green mustard andcarrots that exist in traditional markets (Badung and Kreneng market Denpasarcity that treated by washing and without washing. Content of Pb and Cd in greenmustard and carrots that analyzed by AAS (atomic absorption spectrophotometer.The results of research shows that contents of Pb in green mustard andcarrots that washed and without washed in Kreneng and Badung Market equal to64.71 ± 6.66 ug / g, 69.58 ± 4.61 ug / g, 62.56 ± 6.99 ug / g, 64.96 ± 7:20 ug / g,62.56 ± 6:56 ug / g, 73, 91 ± 2:51 ug / g, 57.17 ± 8:59 ug / g, 59.71 ± 8.93 ug / gdry weight. Content of Cd that washed and without washed equal to SCK 8.81 ±1.68?g / g, 10, 55 ± 1.78 ug / g, 8.09 ± 1.71 ug / g, 9.30 ± 2:01 ug / g, 8.96 ± 1.72ug / g, 10.09 ± 1:09 ug / g, 7.39 ± 1.6 ug / g 5, 8.14 ± 1.71 ug / g dry weight

  14. Research on Evaluation of SaaSSP Service Quality Based on SLA%基于SLA的SaaSSP服务质量评价研究

    Institute of Scientific and Technical Information of China (English)

    梁昌勇; 江贵红; 陆文星

    2013-01-01

    以软件即服务(SaaS)模式中服务提供商(SaaSSP)的服务质量为研究对象,在 SaaS 电子服务质量评价指标实证研究的基础上获得评价维度和指标,结合由服务等级协议(SLA)形成的用户期望,采用SERVQUAL模型的服务质量差距思想,提出一种基于SLA的SaaSSP服务质量评价方法。算例结果表明,该方法能较好地融合服务质量差距理论与SaaS,为SaaS市场运营中软件服务提供商的服务质量评价提供参考。%This paper emphasizes on building a new evaluation method of Software as a Service’s Service Provider(SaaSSP) service quality based on Service Level Agreement(SLA). Based on the evaluation indicators of Software as a Service(SaaS) electronic service quality in the empirical research, this method is developed with consideration of user’s expectation which is result from SLA and adoption of the thought about quality gaps in the classical SERVQUAL model. Example results show that this method can combine the service quality gaps model and the characteristics of SaaS model well and it can provide reference to evaluate SaaSSP service quality.

  15. Development of a rapid SNP-typing assay to differentiate Bifidobacterium animalis ssp. lactis strains used in probiotic-supplemented dairy products.

    Science.gov (United States)

    Lomonaco, Sara; Furumoto, Emily J; Loquasto, Joseph R; Morra, Patrizia; Grassi, Ausilia; Roberts, Robert F

    2015-02-01

    Identification at the genus, species, and strain levels is desirable when a probiotic microorganism is added to foods. Strains of Bifidobacterium animalis ssp. lactis (BAL) are commonly used worldwide in dairy products supplemented with probiotic strains. However, strain discrimination is difficult because of the high degree of genome identity (99.975%) between different genomes of this subspecies. Typing of monomorphic species can be carried out efficiently by targeting informative single nucleotide polymorphisms (SNP). Findings from a previous study analyzing both reference and commercial strains of BAL identified SNP that could be used to discriminate common strains into 8 groups. This paper describes development of a minisequencing assay based on the primer extension reaction (PER) targeting multiple SNP that can allow strain differentiation of BAL. Based on previous data, 6 informative SNP were selected for further testing, and a multiplex preliminary PCR was optimized to amplify the DNA regions containing the selected SNP. Extension primers (EP) annealing immediately adjacent to the selected SNP were developed and tested in simplex and multiplex PER to evaluate their performance. Twenty-five strains belonging to 9 distinct genomic clusters of B. animalis ssp. lactis were selected and analyzed using the developed minisequencing assay, simultaneously targeting the 6 selected SNP. Fragment analysis was subsequently carried out in duplicate and demonstrated that the assay yielded 8 specific profiles separating the most commonly used commercial strains. This novel multiplex PER approach provides a simple, rapid, flexible SNP-based subtyping method for proper characterization and identification of commercial probiotic strains of BAL from fermented dairy products. To assess the usefulness of this method, DNA was extracted from yogurt manufactured with and without the addition of B. animalis ssp. lactis BB-12. Extracted DNA was then subjected to the minisequencing

  16. Role of nitrification inhibitor DMPP( 3,4-dimethylpyrazole phosphate) in NO3--N accumulation in greengrocery( Brassica campestris L. Ssp. Chinensis )and vegetable soil

    Institute of Scientific and Technical Information of China (English)

    XU Chao; WU Liang-huan; JU Xiao-tang; ZHANG Fu-suo

    2005-01-01

    The influence of nitrification inhibitor(NI) 3,4-dimethylpyrazole phosphate (DMPP) on nitrate accumulation in greengrocery( Brassica campestris L. ssp. chinensis) and vegetable soil at surface layer were investigated in field experiments in 2002 and 2003.Results showed that NI DMPP took no significant effect on yields of edible parts of greengrocery, but it could significantly decrease NO3- -N concentration in greengrccery and in vegetable soil at surface layer. In addition, NI DMPP could reduce the NO3--N concentration during the prophase stage of storage.

  17. Estudio molecular de gluteninas de alto y bajo peso molecular en Triticum aestivum ssp. vulgare L. y su relación con la calidad panadera

    OpenAIRE

    2013-01-01

    El trigo blando (Triticum aestivum ssp vulgare L., AABBDD, 2n=6x=42) presenta propiedades viscoélasticas únicas debidas a la presencia en la harina de las prolaminas: gluteninas y gliadinas. Ambos tipos de proteínas forman parte de la red de gluten. Basándose en la movilidad en SDS-PAGE, las gluteninas se clasifican en dos grupos: gluteninas de alto peso molecular (HMW-GS) y gluteninas de bajo peso molecular (LMW-GS). Los genes que codifican para las HMW-GS se encuentran en tres loci del gru...

  18. Future Climate Prediction of Urban Atmosphere in A Tropical Megacity: Utilization of RCP/SSP Scenarios with an Urban Growth Model

    Science.gov (United States)

    Darmanto, N. S.; Varquez, A. C. G.; Kanda, M.; Takakuwa, S.

    2016-12-01

    Economic development in Southeast Asia megacities leads to rapid transformation into more complicated urban configurations. These configurations, including building geometry, enhance aerodynamic drag thus reducing near-surface wind speeds. Roughness parameters representing building geometry, along with anthropogenic heat emissions, contribute to the formation of urban heat islands (UHI). All these have been reproduced successfully in the Weather Research and Forecasting (WRF) Model coupled with an improved single-layer urban canopy model incorporating a realistic distribution of urban parameters and anthropogenic heat emission in the Jakarta Greater Area. We apply this technology to climate change studies by introducing future urbanization defined by urban sprawl, vertical rise in buildings, and increase anthropogenic heat emission (AHE) due to population changes, into futuristic climate modelling. To simulate 2050s future climate, pseudo-global warming method was used which relied on current and ensembles of 5 CMIP5 GCMs for 2 representative concentration pathways (RCP), 2.6 and 8.5. To determine future urbanization level, 2050 population growth and energy consumption were estimated from shared socioeconomic pathways (SSP). This allows the estimation of future urban sprawl, building geometry, and AHE using the SLEUTH urban growth model and spatial growth assumptions. Two cases representing combinations of RCP and SSP were simulated in WRF: RCP2.6-SSP1 and RCP8.5-SSP3. Each case corresponds to best and worst-case scenarios of implementing adaptation and mitigation strategies, respectively. It was found that 2-m temperature of Jakarta will increase by 0.62°C (RCP2.6) and 1.44°C (RCP8.5) solely from background climate change; almost on the same magnitude as the background temperature increase of RCP2.6 (0.5°C) and RCP8.5 (1.2°C). Compared with previous studies, the result indicates that the effect of climate change on UHI in tropical cities may be lesser than

  19. Application of the ligase chain reaction to the detection of nisinA and nisinZ genes in Lactococcus lactis ssp. lactis.

    Science.gov (United States)

    Ward, L J; Brown, J C; Davey, G P

    1994-03-15

    This paper reports on the application of the ligase chain reaction (LCR) to the specific detection of variants of the nisin structural gene (nisinA and nisinZ) in nisin producing strains of Lactococcus lactis ssp lactis. The LCR assay was used to screen nisin producing strains to determine which form of the nisin structural gene they contained. This method of differentiating the nisin structural gene variants provides a useful alternative to the only other available genetic differentiation, that of sequencing the gene.

  20. Características da bacteriocina produzida por Lactococcus lactis ssp. hordniae CTC 484 e seu efeito sobre Listeria monocytogenes em carne bovina

    OpenAIRE

    Bromberg,Renata; Moreno,Izildinha; Delboni,Roberta R.; Cintra,Helen C.

    2006-01-01

    O isolamento de linhagens de bactérias lácticas produtoras de bacteriocinas em carnes e seus produtos derivados resultou na detecção de Lactococcus lactis ssp. hordniae CTC 484, proveniente de frango. A bacteriocina inibiu não apenas uma outra bactéria láctica (Lactobacillus helveticus), mas também microorganismos patogênicos (Staphylococcus aureus, Listeria monocytogenes, Bacillus cereus, Clostridium perfringens e Enterococcus faecalis). Ela foi inativada por causa de enzimas como: alfa-quim...

  1. SSP Boosts Air Transport Safety Management%SSP——民航安全从规章管理到绩效管理的转变

    Institute of Scientific and Technical Information of China (English)

    张元; 李敬

    2010-01-01

    @@ 2008年,国际民航组织(ICAO)对附件1、6、8、11、13和14进行了新一轮的修订.在此次修订中,ICAO在对各成员国建立安全管理体系(SMS)提出了更为详细要求的同时,还次对各成员国建立并实施国家航空安全纲要(SSP)提出了具体的要求,并将SSP作为USOAP审计的一部分.

  2. Contrasting short-term performance of mountain birch (Betula pubescens ssp. czerepanovii) treeline along a latitudinal continentality-maritimity gradient in the southern Swedish Scandes

    OpenAIRE

    2012-01-01

    Positional treeline shift is a fundamental aspect and indicator of high-mountain vegetation response to climate change. This study analyses treeline performance during the period 2005/2007 -2010/2011 in the Swedish Scandes. Focus is on mountain birch (Betula pubescens ssp. czerepanovii) along a regional climatic maritimity-continentality gradient. Treeline upshift by 3.0 yr-1 in the maritime part differed significantly from retreat by 0.4 m yr-1 in the continental part of the transect. This d...

  3. Role of nitrification inhibitor DMPP (3, 4-dimethylpyrazole phosphate) in NO(3-)-N accumulation in greengrocery( Brassica campestris L. ssp. chinensis) and vegetable soil.

    Science.gov (United States)

    Xu, Chao; Wu, Liang-huan; Ju, Xiao-tang; Zhang, Fu-suo

    2005-01-01

    The influence of nitrification inhibitor (NI) 3, 4-dimethylpyrazole phosphate (DMPP) on nitrate accumulation in greengrocery (Brassica campestris L. ssp. chinensis) and vegetable soil at surface layer were investigated in field experiments in 2002 and 2003. Results showed that NI DMPP took no significant effect on yields of edible parts of greengrocery, but it could significantly decrease NO(3-)-N concentration in greengrocery and in vegetable soil at surface layer. In addition, NI DMPP could reduce the NO(3-)-N concentration during the prophase stage of storage.

  4. Sequence analysis of keratin-like proteins and cloning of intermediate filament-like cDNA from higher plant cells

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Two keratin-like proteins of 64 and 55 ku were purified from suspension cells of Daucus carota L.,and their partial amino acid sequences were determined.The homological analysis showed that the sequence from the 64 ku protein was highly homological to b -glucosidase,and that from the 55 ku protein had no significant homologue in GenBank.Using conservative sequence of animal IF proteins as primer,we cloned a cDNA fragment from Daucus carota L.Southern blot and Northern blot results indicated that this cDNA fragment was a single copy gene and expressed both in suspension cells and leaves.Homological analysis revealed that it had moderate homology to a variety of a -helical proteins.Our results might shed more light on molecular characterization of IF existence in higher plant.

  5. Snakebites by Crotalus durissus ssp in children in Campinas, São Paulo, Brazil Acidentes por serpentes Crotalus durisssus ssp em crianças em Campinas, São Paulo, Brasil

    Directory of Open Access Journals (Sweden)

    Fábio BUCARETCHI

    2002-01-01

    Full Text Available From January, 1984 to March, 1999, 31 children under 15 y old (ages 1-14 y, median 8 y were admitted after being bitten by rattlesnakes (Crotalus durissus ssp. One patient was classified as "dry-bite", 3 as mild envenoming, 9 as moderate envenoming and 18 as severe envenoming. Most patients had neuromuscular manifestations, such as palpebral ptosis (27/31, myalgia (23/31 and weakness (20/31. Laboratory tests suggesting rhabdomyolysis included an increase in total blood creatine kinase (CK, 28/29 and lactate dehydrogenase (LDH, 25/25 levels and myoglobinuria (14/15. The main local signs and symptoms were slight edema (20/31 and erythema (19/31. Before antivenom (AV administration, blood coagulation disorders were observed in 20/25 children that received AV only at our hospital (incoagulable blood in 17/25. AV early reactions were observed in 20 of these 25 cases (9/9 patients not pretreated and 11/16 patients pretreated with hydrocortisone and histamine H1 and H2 antagonists. There were no significant differences in the frequency of patients with AV early reactions between the groups that were and were not pretreated (Fisher's exact test, p = 0.12. Patients admitted less than and more than 6 h after the bite showed the same risk of developing severe envenoming (Fisher's exact test, p = 1. No children of the first group (De janeiro de 1984 a março de 1999, 31 crianças com menos de 15 anos de idade (1 a 14 anos, mediana = 8 anos foram admitidas após terem sido picadas por Crotalus durissus ssp. Uma criança não apresentou manifestações clínicas de envenenamento, enquanto 3 foram classificadas como acidente leve, 9 como moderado e 18 como grave. A maioria das crianças apresentou envolvimento neuromuscular, tais como ptose palpebral (27/31, mialgia (23/31 e fraqueza (20/31. Alterações laboratoriais sugerindo rabdomiólise também foram observadas, como aumento das enzimas séricas CK (28/29 e LDH (25/25 e mioglobinúria (14/15. As

  6. Population-genetic analysis of HvABCG31 promoter sequence in wild barley (Hordeum vulgare ssp. spontaneum

    Directory of Open Access Journals (Sweden)

    Ma Xiaoying

    2012-09-01

    Full Text Available Abstract Background The cuticle is an important adaptive structure whose origin played a crucial role in the transition of plants from aqueous to terrestrial conditions. HvABCG31/Eibi1 is an ABCG transporter gene, involved in cuticle formation that was recently identified in wild barley (Hordeum vulgare ssp. spontaneum. To study the genetic variation of HvABCG31 in different habitats, its 2 kb promoter region was sequenced from 112 wild barley accessions collected from five natural populations from southern and northern Israel. The sites included three mesic and two xeric habitats, and differed in annual rainfall, soil type, and soil water capacity. Results Phylogenetic analysis of the aligned HvABCG31 promoter sequences clustered the majority of accessions (69 out of 71 from the three northern mesic populations into one cluster, while all 21 accessions from the Dead Sea area, a xeric southern population, and two isolated accessions (one from a xeric population at Mitzpe Ramon and one from the xeric ‘African Slope’ of “Evolution Canyon” formed the second cluster. The southern arid populations included six haplotypes, but they differed from the consensus sequence at a large number of positions, while the northern mesic populations included 15 haplotypes that were, on average, more similar to the consensus sequence. Most of the haplotypes (20 of 22 were unique to a population. Interestingly, higher genetic variation occurred within populations (54.2% than among populations (45.8%. Analysis of the promoter region detected a large number of transcription factor binding sites: 121–128 and 121–134 sites in the two southern arid populations, and 123–128,125–128, and 123–125 sites in the three northern mesic populations. Three types of TFBSs were significantly enriched: those related to GA (gibberellin, Dof (DNA binding with one finger, and light. Conclusions Drought stress and adaptive natural selection may have been important

  7. Comparative Analysis of WRKY Genes Potentially Involved in Salt Stress Responses in Triticum turgidum L. ssp. durum

    Science.gov (United States)

    Yousfi, Fatma-Ezzahra; Makhloufi, Emna; Marande, William; Ghorbel, Abdel W.; Bouzayen, Mondher; Bergès, Hélène

    2017-01-01

    WRKY transcription factors are involved in multiple aspects of plant growth, development and responses to biotic stresses. Although they have been found to play roles in regulating plant responses to environmental stresses, these roles still need to be explored, especially those pertaining to crops. Durum wheat is the second most widely produced cereal in the world. Complex, large and unsequenced genomes, in addition to a lack of genomic resources, hinder the molecular characterization of tolerance mechanisms. This paper describes the isolation and characterization of five TdWRKY genes from durum wheat (Triticum turgidum L. ssp. durum). A PCR-based screening of a T. turgidum BAC genomic library using primers within the conserved region of WRKY genes resulted in the isolation of five BAC clones. Following sequencing fully the five BACs, fine annotation through Triannot pipeline revealed 74.6% of the entire sequences as transposable elements and a 3.2% gene content with genes organized as islands within oceans of TEs. Each BAC clone harbored a TdWRKY gene. The study showed a very extensive conservation of genomic structure between TdWRKYs and their orthologs from Brachypodium, barley, and T. aestivum. The structural features of TdWRKY proteins suggested that they are novel members of the WRKY family in durum wheat. TdWRKY1/2/4, TdWRKY3, and TdWRKY5 belong to the group Ia, IIa, and IIc, respectively. Enrichment of cis-regulatory elements related to stress responses in the promoters of some TdWRKY genes indicated their potential roles in mediating plant responses to a wide variety of environmental stresses. TdWRKY genes displayed different expression patterns in response to salt stress that distinguishes two durum wheat genotypes with contrasting salt stress tolerance phenotypes. TdWRKY genes tended to react earlier with a down-regulation in sensitive genotype leaves and with an up-regulation in tolerant genotype leaves. The TdWRKY transcripts levels in roots increased

  8. Implications of PCR and ELISA results on the routes of bulk-tank contamination with Mycobacterium avium ssp. paratuberculosis.

    Science.gov (United States)

    Beaver, A; Cazer, C L; Ruegg, P L; Gröhn, Y T; Schukken, Y H

    2016-02-01

    Mycobacterium avium ssp. paratuberculosis (MAP), the etiologic agent of Johne's disease in dairy cattle, may enter the bulk tank via environmental contamination or direct excretion into milk. Traditionally, diagnostics to identify MAP in milk target either MAP antibodies (by ELISA) or the organism itself (by culture or PCR). High ELISA titers may be directly associated with excretion of MAP into milk but only indirectly linked to environmental contamination of the bulk tank. Patterns of bulk-milk ELISA and bulk-milk PCR results could therefore provide insight into the routes of contamination and level of infection or environmental burden. Coupled with questionnaire responses pertaining to management, the results of these diagnostic tests could reveal correlations with herd characteristics or on-farm practices that distinguish herds with high and low environmental bulk-tank MAP contamination. A questionnaire on hygiene, management, and Johne's specific parameters was administered to 292 dairy farms in New York, Oregon, and Wisconsin. Bulk-tank samples were collected from each farm for evaluation by real-time PCR and ELISA. Before DNA extraction and testing of the unknown samples, bulk-milk template preparation was optimized with respect to parameters such as MAP fractionation patterns and lysis. Two regression models were developed to explore the relationships among bulk-tank PCR, ELISA, environmental predictors, and herd characteristics. First, ELISA optical density (OD) was designated as the outcome in a linear regression model. Second, the log odds of being PCR positive in the bulk tank were modeled using binary logistic regression with penalized maximum likelihood. The proportion of PCR-positive bulk tanks was highest for New York and for organic farms, providing a clue as to the geographical patterns of MAP-positive bulk-tank samples and relationship to production type. Bulk-milk PCR positivity was also higher for large relative to small herds. The models

  9. Effect of the Antisense BcMF12 Driven by the BcA9 Promoter on Gene Silencing in Brassica campestris L. ssp. chinensis

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The study analyzed the silencing of BcMF12 gene regulated by BcA9 promoter in the transgenic pakchoi and confirmed the effect of antisense BcMF12 gene on the pollen development. A conserved BcMF12 gene fragment was amplified from the cDNA of flower buds in pakchoi (Brassica campestris L. ssp. chinensis, syn. B. rapa L. ssp. chinensis) and was fused to the anther specific BcA9 promoter. The plant antisense expression vector was constructed and then introduced into pakchoi via Agrobacterium-mediated transformation. The transgenic plants were screened by antibiotics and molecular analysis. PCR and Southern blot revealed that the antisense BcMF12-GUS fusion gene regulated by BcA9 promoter was integrated into transgenic plants. Northern blot suggested that the expression of BcMF12 gene was down-regulated significantly. The pollen germination rate of transgenic plants with antisense BcMF12 gene decreased as compared with that of the control plants. The expression of the gene BcMF12 related to the pollen development was inhibited by the antisense BcMF12 driven by BcA9 promoter, which consequently affected the pollen development in pakchoi.

  10. Growth and exopolysaccharide yield of Lactobacillus delbrueckii ssp. bulgaricus DSM 20081 in batch and continuous bioreactor experiments at constant pH.

    Science.gov (United States)

    Mende, Susann; Krzyzanowski, Leona; Weber, Jost; Jaros, Doris; Rohm, Harald

    2012-02-01

    Some Lactobacillus delbrueckii ssp. bulgaricus strains are able to synthesize exopolysaccharides (EPS) and are therefore highly important for the dairy industry as starter cultures. The aim of this study was to investigate the nutritional requirements for growth and EPS production of Lactobacillus delbrueckii ssp. bulgaricus DSM 20081. A medium was developed from a semi-defined medium (SDM) in which glucose was replaced by lactose and different combinations of supplements (nucleobases, vitamins, salts, sodium formate and orotic acid) were added. Constant pH batch fermentation with the modified medium resulted in an EPS yield of approximately 210 mg glucose equivalents per liter medium. This was a 10-fold increase over flask cultivation of this strain in SDM. Although not affecting cell growth, the mixture of salts enhanced the EPS synthesis. Whereas EPS production was approximately 12 mg/g dry biomass without salt supplementation, a significantly higher yield (approximately 20 mg/g dry biomass) was observed after adding the salt mixture. In continuous fermentation, a maximal EPS concentration was obtained at a dilution rate of 0.31/h (80 mg EPS/L), which corresponded to a specific EPS production of 49 mg/g dry biomass.

  11. Comparative sequence analysis of the potato cyst nematode resistance locus H1 reveals a major lack of co-linearity between three haplotypes in potato (Solanum tuberosum ssp.).

    Science.gov (United States)

    Finkers-Tomczak, Anna; Bakker, Erin; de Boer, Jan; van der Vossen, Edwin; Achenbach, Ute; Golas, Tomasz; Suryaningrat, Suwardi; Smant, Geert; Bakker, Jaap; Goverse, Aska

    2011-02-01

    The H1 locus confers resistance to the potato cyst nematode Globodera rostochiensis pathotypes 1 and 4. It is positioned at the distal end of chromosome V of the diploid Solanum tuberosum genotype SH83-92-488 (SH) on an introgression segment derived from S. tuberosum ssp. andigena. Markers from a high-resolution genetic map of the H1 locus (Bakker et al. in Theor Appl Genet 109:146-152, 2004) were used to screen a BAC library to construct a physical map covering a 341-kb region of the resistant haplotype coming from SH. For comparison, physical maps were also generated of the two haplotypes from the diploid susceptible genotype RH89-039-16 (S. tuberosum ssp. tuberosum/S. phureja), spanning syntenic regions of 700 and 319 kb. Gene predictions on the genomic segments resulted in the identification of a large cluster consisting of variable numbers of the CC-NB-LRR type of R genes for each haplotype. Furthermore, the regions were interspersed with numerous transposable elements and genes coding for an extensin-like protein and an amino acid transporter. Comparative analysis revealed a major lack of gene order conservation in the sequences of the three closely related haplotypes. Our data provide insight in the evolutionary mechanisms shaping the H1 locus and will facilitate the map-based cloning of the H1 resistance gene.

  12. Characterization of BcMF23a and BcMF23b, two putative pectin methylesterase genes related to pollen development in Brassica campestris ssp. chinensis.

    Science.gov (United States)

    Lin, Sue; Huang, Li; Yu, Xiaolin; Xiong, Xingpeng; Yue, Xiaoyan; Liu, Tingting; Liang, Ying; Lv, Meiling; Cao, Jiashu

    2017-02-01

    Two homologous genes, Brassica campestris Male Fertility 23a (BcMF23a) and Brassica campestris Male Fertility 23b (BcMF23b), encoding putative pectin methylesterases (PMEs) were isolated from Brassica campestris ssp. chinensis (syn. Brassica rapa ssp. chinensis). These two genes sharing high sequence identity with each other were highly expressed in the fertile flower buds but silenced in the sterile ones of genic male sterile line system ('Bcajh97-01A/B'). Results of RT-PCR and in situ hybridization suggested that BcMF23a and BcMF23b were pollen-expressed genes, whose transcripts were first detected at the binucleate pollen and maintained throughout to the mature pollen grains. Western blot indicated that both of the putative BcMF23a and BcMF23b proteins are approximately 40 kDa, which exhibited extracellular localization revealed by transient expression analysis in the onion epidermal cells. The promoter of BcMF23a was active specifically in pollen during the late pollen developmental stages, while, in addition to the pollen, BcMF23b promoter drove an extra gene expression in the valve margins, abscission layer at the base of the first true leaves, taproot and lateral roots in seedlings.

  13. Genetic variability in anthocyanin composition and nutritional properties of blue, purple, and red bread (Triticum aestivum L.) and durum (Triticum turgidum L. ssp. turgidum convar. durum) wheats.

    Science.gov (United States)

    Ficco, Donatella B M; De Simone, Vanessa; Colecchia, Salvatore A; Pecorella, Ivano; Platani, Cristiano; Nigro, Franca; Finocchiaro, Franca; Papa, Roberto; De Vita, Pasquale

    2014-08-27

    Renewed interest in breeding for high anthocyanins in wheat (Triticum ssp.) is due to their antioxidant potential. A collection of different pigmented wheats was used to investigate the stability of anthocyanins over three crop years. The data show higher anthocyanins in blue-aleurone bread wheat (Triticum aestivum L.), followed by purple- and red-pericarp durum wheat (Triticum turgidum L. ssp. turgidum convar. durum), using cyanidin 3-O-glucoside as standard. HPLC of the anthocyanin components shows five to eight major anthocyanins for blue wheat extracts, compared to three anthocyanins for purple and red wheats. Delphinidin 3-O-rutinoside, delphinidin 3-O-glucoside, and malvidin 3-O-glucoside are predominant in blue wheat, with cyanidin 3-O-glucoside, peonidin 3-O-galactoside, and malvidin 3-O-glucoside in purple wheat. Of the total anthocyanins, 40-70% remain to be structurally identified. The findings confirm the high heritability for anthocyanins, with small genotype × year effects, which will be useful for breeding purposes, to improve the antioxidant potential of cereal-based foods.

  14. Demographic Monitoring on Military Lands: Scales of Uncertainty

    Science.gov (United States)

    2004-08-01

    AGRI Edge(m/ha) 0.16 10: FOREST Edge(m/ha) 0.05 100m Upperstory 40%: Quercus rubra Midstory 80%: Gleditsia triacanthos Juniperus virginiana...Understory 30%: Cornus alternifolia Sassafras albidum Midstory ɝ%: Quercus stellata Gleditsia triacanthos Understory 30%: Juniperus virginiana... Gleditsia triacanthos Ground cover 85%: Daucus carota Aster spp. MAPS Habitat Structure Assessment Managing for Field Sparrow in 2003 Extensive springtime

  15. Embryo forming cells in carrot suspension cultures.

    OpenAIRE

    Toonen, M.A.J.

    1997-01-01

    Somatic cells of many plant species can be cultured in vitro and induced to form embryos that are able to develop into mature plants. This process, termed somatic embryogenesis, was originally described in carrot (Daucus carota L.). Somatic embryos develop through the same characteristic morphological stages, i.e. the globular-, heartand torpedo-stage respectively, as their zygotic counterparts. Due to the different cellular origin of somatic embryos, it is less clear to what extent the earli...

  16. Isolation and characterization of a new chromosomal virulence gene of Agrobacterium tumefaciens.

    OpenAIRE

    Wirawan, I G; Kang, H W; Kojima, M.

    1993-01-01

    A mutant (strain B119) of Agrobacterium tumefaciens with a chromosomal mutation was isolated by transposon (Tn5) mutagenesis. The mutant exhibited growth rates on L agar and minimal medium (AB) plates similar to those of the parent strain (strain A208 harboring a nopaline-type Ti plasmid). The mutant was avirulent on all host plants tested: Daucus carota, Cucumis sativus, and Kalanchoe diagremontiana. The mutant was not impaired in attachment ability to carrot cells. The mutant had one insert...

  17. Eliminating Invasive Introduced Species While Preserving Native Species in Coastal Meadow Habitat, a Critically Imperiled Ecosystem

    Science.gov (United States)

    2010-01-01

    Dactylis glomerata, Anthoxanthum odoratum, and Agrostis alba), Queen Anne’s lace (Daucus carota), and European false dandelion (Hypochaeris radicata...were historically stabilized by native coastal prairie plants, became pasture for grazing cattle. Since native prairie plants are shallow- rooted ...heavy grazing by cattle began to break down the root structure, destabilizing the dune ridges and causing the sand to begin blowing farther inland

  18. Desiccation tolerance of somatic embryoids.

    OpenAIRE

    Tetteroo, F.A.A.

    1996-01-01

    This thesis describes the research performed on the subject "Desiccation tolerance in somatic embryoids". Somatic embryoids are bipolar structures formed in tissue culture, with both a shoot and a root apex, which resemble very much zygotic embryos found in seeds. Through simultaneous development of root and shoot, these embryoids can grow out into complete plantlets.In Chapter 2 we describe an optimized method to produce completely desiccation tolerant carrot ( Daucus carota ) embryoids. Usi...

  19. Lactobacillus casei ssp. rhamnosus enhances non specific protection against Plasmodium chabaudi AS in mice Lactobacillus casei ssp. rhamnosus aumenta la protección no específica contra Plasmodium chabaudi AS en ratones

    Directory of Open Access Journals (Sweden)

    Federico Martínez-Gómez

    2006-12-01

    Full Text Available OBJECTIVE: To evaluate the capacity of Lactobacillus casei ssp. rhamnosus to enhance resistance against Plasmodium chabaudi chabaudi AS. MATERIAL AND METHODS: NIH mice were IP injected with viable lactobacillus casei seven days (LC1 group or 7 and 14 days (LC2 group before the challenge (day 0 with Plasmodium chabaudi parasitized red blood cells (pRBC. Control mice were inoculated with pRBC only. When parasitaemia was resolved, naive mice were injected with spleen cells from each group. The parasitaemia was measured. Nitric oxide (NO. in serum was determined. RESULTS: Mice from the LC1 group presented a reduction in parasitaemia, with a prepatent period of five days, parasitaemia lasted 11 days, and the peak was (36.3 % pRBC on the 12th day post-infection. Mice from the LC2 group showed a prepatent period of five days, parasitaemia lasted eight days, and the peak (30 % pRBC was of on the 11th day. In the control, the prepatent period was three days, the parasitaemia lasted 15 days, and the peak (51% pRBC was on day nine. Mice inoculated with spleen cells from the LC2 group showed a prepatent period of 21 days, parasitaemia lasted seven days, and the peak (13.5% pRBC was on the 26th day. CONCLUSION: L. casei enhanced nonspecific resistance to P. chabaudi, as indicated by longer prepatent periods, reduced parasitaemia, and reduction in the viability of the parasites recovered from the spleen of infected mice, along with high concentrations of NO. in serum.OBJETIVO: Evaluar la capacidad de Lactobacillus casei de aumentar la resistencia a la infección con Plasmodium chabaudi en ratones. MATERIAL Y MÉTODOS: Ratones NIH fueron inyectados intraperitonealmente con L. casei viable 7 días (grupo LC1 o 7 y 14 días (grupo LC2 antes del reto (día 0 con glóbulos rojos parasitados (GRP con P. chabaudi. Los testigos fueron inoculados con GRP solamente. Cuando la parasitemia se resolvió, se inocularon ratones limpios con células de bazo de cada grupo. Se

  20. SSP在护理技能实训中的应用效果%The effect of SSP used in the nursing skills training

    Institute of Scientific and Technical Information of China (English)

    蔡妤珂; 周丽君

    2015-01-01

    Objective To investigate the effects of SSP in the nursing skills training courses to vocational nurs-ing students about critical thinking and communication skills. Methods Two classes were divided into experimental group and control group, experimental group selected SSP care skills training, and the control group were taught by con-ventional show - practice model of nursing skills training. After the end of the course, students were investigated using critical thinking questionnaire ( CTDI-CV) and the communication skills test questionnaire. Results The total score of critical thinking and the average score of finding out the truth, analytical ability, systematic ability and cognitive maturi-ty, and scores of communication skills were higher in the experimental group, there were statistically significant differ-ences between experimental group and control group ( P<0. 05 , P<0. 01 ) . Conclusions SSP can improve critical thinking skills and communication skills for vocational nursing students.%目的:探讨在护理技能实训课程中应用SSP对高职护生评判性思维及沟通能力的影响。方法选取2009级两个班级分为实验组和对照组,实验组应用SSP进行护理技能实训,对照组按常规示教-练习模式进行护理技能实训,课程结束后采用评判性思维倾向问卷( CTDI-CV)及沟通能力测试问卷调查。结果实验组护生在评判性思维倾向总分和寻找真相、分析能力、系统化能力、认知成熟度方面的平均分及沟通能力评分上均高于对照组,差异有统计学意义( P<0.05)。结论 SSP可以提高高职护生的评判性思维能力和沟通能力。

  1. Separation and Identification of Erwinia caratovora ssp . caratovora Pathogen of Coriandrum sativum L%芫荽软腐病病原菌分离与鉴定

    Institute of Scientific and Technical Information of China (English)

    张立微; 张景涛; 李小梅

    2015-01-01

    为有效防治芫荽软腐病,提高其产质量,通过对引起芫荽腐烂而绝产的病害的病原菌进行分离、纯化,对19个菌株进行17项生理生化指标测定。结果表明:根据伯杰氏细菌鉴定手册(第八版)以 Ecc为对照进行鉴定,确定E1(Ames24923)、E3(Ames24927)、E4(CORI107)、E7(CORI139)、E8(CORI140)、E10(CORI147)、E12(CORI289)、E13(CORI318)、E18(PI664510)为芫荽胡萝卜欧文氏杆菌属胡萝卜软腐欧文氏杆菌胡萝卜软腐病亚种(Erw inia carotovora ssp .carotovora ,Ecc)细菌,而其余供试菌株通过测定可确定为细菌,但属何种还需进一步鉴定。%In order to control the Erwinia caratovora ssp .caratovora of Coriandrum sativum L .,and improve the quality ,through the isolating and purificating of the pathogen which causes coriander decay ,19 strains were isolated and purified .The results showed that according to Bergey's Manual of Systematic Bacteriology (eighth edition) and 17 tests of physiology and biochemistry ,9 strainss were Erwiniacarotovora ssp .carotovora ,inclu‐ding E1(Ames24923) ,E3(Ames24927) ,E4(CORI107) ,E7(CORI139) ,E8(CORI140) ,E10(CORI147) ,E12 (CORI289) ,E13(CORI318) ,E18(PI664510) .Other strains should to be identified by other tools .

  2. Genome-wide quantitative trait locus mapping identifies multiple major loci for brittle rachis and threshability in Tibetan semi-wild wheat (Triticum aestivum ssp. tibetanum Shao.

    Directory of Open Access Journals (Sweden)

    Yun-Feng Jiang

    Full Text Available Tibetan semi-wild wheat (Triticum aestivum ssp. tibetanum Shao is a semi-wild hexaploid wheat resource that is only naturally distributed in the Qinghai-Tibet Plateau. Brittle rachis and hard threshing are two important characters of Tibetan semi-wild wheat. A whole-genome linkage map of T. aestivum ssp. tibetanum was constructed using a recombinant inbred line population (Q1028×ZM9023 with 186 lines, 564 diversity array technology markers, and 117 simple sequence repeat markers. Phenotypic data on brittle rachis and threshability, as two quantitative traits, were evaluated on the basis of the number of average spike rachis fragments per spike and percent threshability in 2012 and 2013, respectively. Quantitative trait locus (QTL mapping performed using inclusive composite interval mapping analysis clearly identified four QTLs for brittle rachis and three QTLs for threshability. However, three loci on 2DS, 2DL, and 5AL showed pleiotropism for brittle rachis and threshability; they respectively explained 5.3%, 18.6%, and 18.6% of phenotypic variation for brittle rachis and 17.4%, 13.2%, and 35.2% of phenotypic variation for threshability. A locus on 3DS showed an independent effect on brittle rachis, which explained 38.7% of the phenotypic variation. The loci on 2DS and 3DS probably represented the effect of Tg and Br1, respectively. The locus on 5AL was in very close proximity to the Q gene, but was different from the predicted q in Tibetan semi-wild wheat. To our knowledge, the locus on 2DL has never been reported in common wheat but was prominent in T. aestivum ssp. tibetanum accession Q1028. It remarkably interacted with the locus on 5AL to affect brittle rachis. Several major loci for brittle rachis and threshability were identified in Tibetan semi-wild wheat, improving the understanding of these two characters and suggesting the occurrence of special evolution in Tibetan semi-wild wheat.

  3. Serotipos de Campylobacter jejuni ssp. jejuni aislado en carne de ave para consumo humano y en muestras de heces de niños con diarrea Campylobacter jejuni ssp. jejuni serotypes in avian meat for human consumption and in faecal samples of children with diarrhoea

    Directory of Open Access Journals (Sweden)

    H. Fernández

    2005-01-01

    Full Text Available Considerando a las aves de consumo como un importante reservorio de C. jejuni ssp jejuni y sus subproductos alimenticios como principal vehículo, fueron serotipificadas 50 cepas aisladas de carne de ave para consumo humano, correlacionándolas epidemiológicamente con los serotipos encontrados en 50 cepas aisladas de niños con diarrea. Las cepas de C.jejuni ssp jejuni fueron serotipificadas mediante la técnica de hemaglutinación pasiva descrita por Penner, utilizando un kit comercial (DENKA SEIKEN, conteniendo los 25 sueros tipificadores para los serotipos descritos como los más frecuentes. Los serotipos A, B, F, L, N e Y fueron aislados concomitantemente en ambos tipos de muestras. Los serotipos de mayor aislamiento en las muestras de origen humano fueron Z2 (16% y Z5 (12%, mientras que en las de origen aviar fueron los serotipos A (28%, C (10%, L (10% e Y (10%. Al no coexistir los serotipos Z y C, en ambos grupos muestrales, es posible inferir la existencia de otros reservorios y vehículos que estén actuando como agentes transmisores de esta bacteria al ser humano.Having in mind that fowl and avian byproducts for human consumption are important reservoirs and vehicles for C. jejuni ssp. jejuni, a serotyping study was conducted in 50 strains isolated from avian meat and 50 isolated from human diarrhoeic stools. C. jejuni ssp. jejuni serotyping was carried out using a commercial kit with 25 antisera (DENKA SEIKEN, based on the Penner’s passive haemagglutination technique. Serotypes A, B, F, L, N e Y were concomitantly found in both kinds of samples. Serotypes Z2 (16% and Z5 (12% were the most frequently found in human strains, whereas serotypes A (28%, C (10%, L (10% and Y (10% were the most frequently isolated from avian samples. However, serotypes Z and C did not coexist in both types of samples. The latter results suggest that additionally to fowl and avian meat, there might be other animal reservoirs and vehicles that could act as

  4. Detection of Campylobacter antibodies in sheep sera by a Dot-ELISA using acid extracts from c. fetus ssp. fetus and c. jejuni strains and comparison with a complement fixation test.

    Science.gov (United States)

    Gürtürk, K; Ekin, I H; Aksakal, A; Solmaz, H

    2002-04-01

    In this study, a dot-enzyme-linked immunosorbent assay (Dot-ELISA) was evaluated in comparison with a complement fixation test (CFT) for the detection of Campylobacter antibodies in sheep sera. Acid glycine extracts (AGE) of both Campylobacter fetus ssp. fetus and Campylobacter jejuni strains that had been isolated from the gall-bladder of slaughtered sheep was used as antigen in both tests. A total of 153 sheep sera from aborted (74) and slaughtered (79) sheep were examined by both Dot-ELISA and CFT. Twenty-two sera showed anti-complementary activity were not suitable for CFT. Of the 22 sera showing anti-complementary activity, two sera were found to be positive in Dot-ELISA. Eighty-eight (67.2%) of the remaining 131 sera were negative by both Dot-ELISA and CFT using AGE of both Campylobacter strains whereas 43 sera (32.8%) gave different reaction patterns in Dot-ELISA and CFT with the extracts of both Campylobacter strains. Twelve sera were positive by both tests using AGE of C. fetus ssp. fetus but CFT failed to detect antibodies in nine of these sera when AGE of C. jejuni was used. Twelve sera were positive by both tests only when AGE of C. fetus ssp. fetus was used. Eleven sera were positive only by CFT. Seven of these reacted only with the AGE of C. fetus ssp. fetus and four sera were positive by using AGE of both Campylobacter strains. The remaining eight sera were found to be positive only by dot-immunobinding assay either with the AGE of both Campylobacter strains or with the AGE of one of the Campylobacter strains. It is concluded that Dot-ELISA using AGE from C. fetus ssp. fetus could be employed for the detection of Campylobacter antibodies in sheep sera and the additional use of AGE from C. jejuni as antigen appeared not to be profitable for this purpose.

  5. The effect of calcium ions on adhesion and competitive exclusion of Lactobacillus ssp. and E. coli O138

    DEFF Research Database (Denmark)

    Larsen, Nadja; Nissen, Peter; Willats, William G.T.

    2007-01-01

    The adhesion abilities of 11 strains of Lactobacillus were determined in vitro using the IPEC-J2 cell line as a model system. Bacteria cultures included the probiotic strains L. rhamnosus GG, L. reuteri ATCC 55730, L. johnsonii NCC 533 and L. reuteri DSM 12246, and new isolates of Lactobacillus ssp....... Adhesion was quantified by scintillation counting of radiolabelled bound bacteria. The highest adhesion of 38%, was determined for L. reuteri DSM 12246 followed by L. plantarum Q47 with an adhesion level of 24%. Other strains showed moderate to low binding of less than 16%. Competitive adhesion experiments...... on IPEC-J2 cells demonstrated that strongly adhesive strains, as L. reuteri DSM 12246 and L. plantarum Q47, significantly reduced the attachment of the less adhesive strains, such as L. rhamnosus GG and L. johnsonii NCC 533, both under condition of co-incubation and in displacement assays, indicating...

  6. Potential for evolutionary change in the seasonal timing of germination in sea beet (Beta vulgaris ssp. maritima) mediated by seed dormancy.

    Science.gov (United States)

    Wagmann, Kristen; Hautekèete, Nina-Coralie; Piquot, Yves; Van Dijk, Henk

    2010-07-01

    In sea beet (Beta vulgaris ssp. maritima), germination occurs in autumn or spring and is mediated by dormancy which can be released by cold or dry periods. Environmental change such as current climate change may require evolutionary response in seasonal timing. Here, we explore the potential for such evolutionary change. Seed dormancy was studied in a composite population based on seeds from all over the species range in France together with several generations of reciprocal crosses. We found high, repeatable variability for dormancy rate among individuals under greenhouse conditions and confirmed its relevance for germination phenology in the field. Our data fitted best with an exclusively maternal determination of the dormancy phenotype. Narrow-sense heritability, h(2) approximately 0.5 in the composite population and approximately 0.4 in the original local populations, was such that rapid evolutionary change in the relative proportions of autumn and spring germination may be possible.

  7. Effects of Nitrogen Fertilizer with Nitrification Inhibitor DMPP (3,4-Dimethylpyrazole phosphate) on Nitrate Accumulation and Quality of Cabbage (Brassica campastris L.ssp.pekinesis)

    Institute of Scientific and Technical Information of China (English)

    XU Chao; WU Liang-huan; JU Xiao-tang; ZHANG Fu-suo

    2004-01-01

    To assess the effects of N fertilizer ammonium sulphate nitrate [(NH4)2SO4 plus NH4NO3;ASN] with the new nitrification inhibitor (NI) 3, 4-dimethylpyrazole phosphate (DMPP)(ASN+DMPP) on yield, nitrate accumulation, and quality of cabbage (Brassica campastrisL. ssp. pekinesis), two field trials were carried out under various soil-climatic conditions in Jinhua City and Xinchang County, Zhejiang Province of China in 2002.Results showed that DMPP could increase the mean yield by + 2.0 t ha-1 in Jinhua, +5.5 t ha-1 in Xinchang, decrease NO3--N content by -9.4% in Jinhua, -7.3% in Xinchang and improve nutritional quality by increasing vitamin C (VC), soluble sugar, K, Fe, Zn contents significantly.

  8. Organogenesis from in vitro-derived leaf and internode explants of Hoya wightii ssp. palniensis -a vulnerable species of Western Ghats

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    Subbaiah Revathi Lakshmi

    2013-06-01

    Full Text Available An efficient system was developed for indirect plant regeneration from in vitro-derived leaf and internode explants of Hoya wightii ssp. palniensis. Maximum percentage of the organogenic callus was obtained on MS medium supplemented with NAA (1.0 mg/l and 2,4-D (2.0 mg/l. The best shoot bud induction was observed on MS medium with BA (1.0 mg/l +IBA (0.5 mg/l. The coconut water (15% was better, resulting in a differentiation of the shoot initials in to well-developed shoots. The elongated shoots (› 3cm long were rooted on a full strength MS basal medium, supplemented with 0.2 mg/l of IBA. Finally, the rooted plants were transferred to the soil with 80% success rate. This protocol was utilized for the in vitro propagation of this endangered plant species.

  9. X-ray peak broadening analysis of Fe50Ni50 nanocrystalline alloys prepared under different milling times and BPR using size strain plot (SSP) method

    Indian Academy of Sciences (India)

    L Hosseinzadeh; J Baedi; A Khorsand Zak

    2014-08-01

    Fe50Ni50 nanocrystalline alloys were prepared by mechanical alloying method at different milling times of 2, 5, 10, 30, 50 and 70 h and ball powder ratios (BPR) of 10 : 1, 20 : 1 and 30 : 1. The structures of prepared powders were studied by X-ray diffraction (XRD). The broadening of the diffraction peaks were analysed using size strain plot (SSP) method and the lattice strain and crystallite size of the nanocrystals were calculated. In addition, the typical morphological studies were performed by scanning electron and transmission electron microscopies (SEM and TEM). The results showed that the crystallite size of the nanocrystals decreased with the milling time and BPR increases; whereas, the lattice constant () increased. Vibrating sample magnetometer (VSM) study of the powder prepared at 50 h and BPR 30 : 1 showed that the sample exhibits both the superparamagnetic and ferromagnetic properties in nanocrystallite size range.

  10. Determination of antimutagenic properties of apigenin-7-O-rutinoside, a flavonoid isolated from Mentha longifolia (L.) Huds. ssp. longifolia with yeast DEL assay.

    Science.gov (United States)

    Gulluce, Medine; Orhan, Furkan; Adiguzel, Ahmet; Bal, Tugba; Guvenalp, Zuhal; Dermirezer, Lutfiye Omur

    2013-07-01

    Lamiaceae is an important plant family that has been investigated for its medicinal properties due to its large amounts of phenolic acids and flavonoids. Flavonoids have been shown to have antioxidant and antimutagenic activities in different test systems, but their certain mechanisms are still unclear. This study was designed to evaluate the mutagenic and antimutagenic activities of apigenin 7-O-rutinoside, a flavonoid isolated from Mentha longifolia (L.) Huds. ssp. longifolia. The possible antimutagenic potential of apigenin 7-O-rutinoside (A7R) was examined against mutagens ethyl methanesulfonate (EMS) and acridine (AC) in a eukaryotic cell system Saccharomyces cerevisiae RS112. The results showed that A7R has different inhibition rates against EMS and AC-induced mutagenicity. Thus, the properties of A7R are of great pharmacological importance and might be beneficial for reducing the risk of reactive oxygen species-related diseases.

  11. DISTRIBUCIÓN DE RAÍCES FINAS DE Eucalyptus globulus ssp. maidenii Y SU RELACIÓN CON ALGUNAS PROPIEDADES DEL SUELO

    OpenAIRE

    María Cristina Costa; Eduardo Augusto Penón; Juan José Gaitán

    2005-01-01

    El objetivo del presente trabajo fue determinar la distribución vertical de la densidad de raíces finas (hasta 2 mm de diámetro) de Eucalyptus globulus ssp. maidenii y su relación con algunas propiedades del suelo hasta una profundidad de 0,5 m. Las raíces fueron muestreadas en la zona cercana el tronco de 10 árboles, utilizando el método del cilindro. La distribución de raíces finas fue influenciada por las propiedades físicas y químicas del suelo. La mayor densidad de raíces finas (DRF) fue...

  12. Monosomic Addition Lines of Flowering Chinese Cabbage (B. campestris L. ssp. chinensis var. parachinensis L. H. Bailey)-Chinese Kale (B. oleracea L. var. alboglabra L. H. Bailey)

    Institute of Scientific and Technical Information of China (English)

    WANG Xi-ne; ZHANG Cheng-he; XUAN Shu-xin; MAN Hong; LIU Hai-he; SHEN Shu-xing

    2008-01-01

    Interspecific alien addition lines have played significant roles in gene mapping, intergenomic gene transfer and chromosomal homoeological identification between closely related species. Selection of alien addition lines was conducted by karyotype analysis and morphological observation with the reference of parents. Triploid interspecies hybrid (AAC, 2n=3x=29) was obtained from Brassica campestris ssp. chinensis var. parachinensis Qinglu 9601 (tetraploid, AAAA, 2n=4x=40)×B. oleracea vat. alboglabra Baihua 9705 (diploid, CC, 2n=2x=18) by immature hybrid embryo culture in vitro. Five different alien monosomic addition lines (AA+C2, AA+C3, AA+C4, AA+C6, AA+C7) were obtained from the backcross progenies of AAC×AA. Each alien monosomic addition line has some specific morphological characters. It is feasible to obtain alien addition lines from the progenies of AAC×AA by karyotype analysis and morphological observation based on the reference of parents.

  13. Antiphytoviral Activity of Satureja montana L. ssp. variegata (Host P. W. Ball Essential Oil and Phenol Compounds on CMV and TMV

    Directory of Open Access Journals (Sweden)

    Dubravka Cukrov

    2010-09-01

    Full Text Available The essential oil of Satureja montana L. ssp. variegata (Host P. W. Ball (Lamiaceae was characterized by a high concentration of oxygenated monoterpenes (71.3%, among which carvacrol (19.4% and thymol (16.6% were the major compounds. When the essential oil was applied on local hosts Chenopodium amaranticolor Coste & Reyn. and Chenopodium quinoa Willd. simultaneously with the infecting virus, the number of local lesions on both Tobacco mosaic virus (TMV and Cucumber mosaic virus (CMV infected plants was reduced for 29.2% and 24.1%, respectively. When applied individually for each virus, thymol was more effective in reducing CMV infection (33.2%, while carvacrol was more effective in reducing the TMV infection (34.3%. No synergistic effect of both monoterpenes was observed in the antiviral activity of the oil.

  14. [Synergistic action of entomopathogenic hyphomycetes and the bacteria Bacillus thuringiensis ssp. morrisoni in the infection of Colorado potato beetle Leptinotarsa decemlineata].

    Science.gov (United States)

    Kriukov, V Iu; Khodyrev, V P; Iaroslavtseva, O N; Kamenova, A S; Duĭsembekov, B A; Glupov, V V

    2009-01-01

    A synchronous coinfection of the Colorado potato beetle Leptinotarsa decemlineata (Say) with the entomopathogenic bacteria Bacillus thuringiensis ssp. morrisoni Bonnifoi & de Barjak var. tenebrionis Krieg et al. and hyphomycete Metarhizium anisopliae (Metsch.) Sorokin or Beauveria bassiana (Bals.) Vuill leads to the rapid death of 95-100% of larvae. The bacteria arrest the nutrition of insects, while the fungal spores kill the weakened larvae. The synergistic effect of two pathogens is recorded at a relatively low hyphomycete titer (1-5 x 10(6) conidia/ml) and is evident in the mortality dynamics at all larval ages. These bacterial and fungal pathogens display no antagonism on artificial nutrient media. This microbial complex is highly efficient under natural conditions (80-90% larval mortality rate and no plant defoliation).

  15. Amino Acids Sequence Based in Silico Analysis of RuBisCO (Ribulose-1,5 Bisphosphate Carboxylase Oxygenase Proteins in Some Carthamus L. ssp.

    Directory of Open Access Journals (Sweden)

    Emre SEVİNDİK

    2017-06-01

    Full Text Available RuBisCO is an important enzyme for plants to photosynthesize and balance carbon dioxide in the atmosphere. This study aimed to perform sequence, physicochemical, phylogenetic and 3D (three-dimensional comparative analyses of RuBisCO proteins in the Carthamus ssp. using various bioinformatics tools. The sequence lengths of the RuBisCO proteins were between 166 and 477 amino acids, with an average length of 411.8 amino acids. Their molecular weights (Mw ranged from 18711.47 to 52843.09 Da; the most acidic and basic protein sequences were detected in C. tinctorius (pI = 5.99 and in C. tenuis (pI = 6.92, respectively. The extinction coefficients of RuBisCO proteins at 280 nm ranged from 17,670 to 69,830 M-1 cm-1, the instability index (II values for RuBisCO proteins ranged from 33.31 to 39.39, while the GRAVY values of RuBisCO proteins ranged from -0.313 to -0.250. The most abundant amino acid in the RuBisCO protein was Gly (9.7%, while the least amino acid ratio was Trp (1.6 %. The putative phosphorylation sites of RuBisCO proteins were determined by NetPhos 2.0. Phylogenetic analysis revealed that RuBisCO proteins formed two main clades. A RAMPAGE analysis revealed that 96.3%-97.6% of residues were located in the favoured region of RuBisCO proteins. To predict the three dimensional (3D structure of the RuBisCO proteins PyMOL was used. The results of the current study provide insights into fundamental characteristic of RuBisCO proteins in Carthamus ssp.

  16. Characterization of the intracellular survival of Mycobacterium avium ssp. paratuberculosis: phagosomal pH and fusogenicity in J774 macrophages compared with other mycobacteria.

    Science.gov (United States)

    Kuehnel, M P; Goethe, R; Habermann, A; Mueller, E; Rohde, M; Griffiths, G; Valentin-Weigand, P

    2001-08-01

    The phagosomes containing viable pathogenic mycobacteria, such as Mycobacterium (M.) tuberculosis and Mycobacterium avium ssp. avium (M. avium), are known to be limited in their ability to both acidify and fuse with late (but not early) endocytic organelles. Here, we analysed the pH and fusogenicity of phagosomes containing M. avium ssp. paratuberculosis (M. ptb), the causative agent of paratuberculosis in ruminants. Using the murine J774 macrophage cell line, we compared viable and heat-killed M. ptb and, in addition, viable or dead M. avium, as well as two non-pathogenic mycobacteria, Mycobacterium smegmatis and Mycobacterium gordonae. Electron microscopic analysis revealed that M. ptb persisted intracellularly in phagosomes for up to 15 days. The phagosomes containing live M. ptb and M. avium were significantly reduced in their ability to acquire some markers for the endocytic pathway, such as internalized calcein, BSA-gold or the membrane protein Lamp 2. However, they were almost completely accessible to 70 kDa fluorescein isothiocyanate (FITC)-dextran and Lamp 1. Overall, the phagosomes containing dead pathogenic mycobacteria behaved similarly to the ones containing live non-pathogenic mycobacteria in all experiments. Using FITC-dextran in a novel fluorescence-activated cell sorting (FACS)-based method, we could also show that the bulk of endocytic compartments, including phagosomes, were only very mildly acidified to approximately pH 6.3 over at least 72 h in J774 cells infected with live M. ptb and M. avium. In contrast, J774 cells treated with heat-killed M. ptb or BSA-coated latex beads showed substantial acidification of the phagosome/endocytic compartments to a pH value of approximately 5.2. After infection with M. smegmatis and M. gordonae, acidification was initially (1-5 h after infection) inhibited, but increased after longer infection to levels similar to those with dead mycobacteria.

  17. Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima-ancestor of all beet crops-and modern sugar beets.

    Science.gov (United States)

    Zachow, Christin; Müller, Henry; Tilcher, Ralf; Berg, Gabriele

    2014-01-01

    The structure and function of the plant microbiome is driven by plant species and prevailing environmental conditions. Effectuated by breeding efforts, modern crops diverge genetically and phenotypically from their wild relatives but little is known about consequences for the associated microbiota. Therefore, we studied bacterial rhizosphere communities associated with the wild beet B. vulgaris ssp. maritima grown in their natural habitat soil from coastal drift lines (CS) and modern sugar beets (Beta vulgaris ssp. vulgaris) cultivated in CS and potting soil (PS) under greenhouse conditions. Analysis of 16S rRNA gene fingerprints and pyrosequencing-based amplicon libraries revealed plant genotype- and soil-specific microbiomes. Wild beet plants harbor distinct operational taxonomic units (OTUs) and a more diverse bacterial community than the domesticated sugar beet plants. Although the rhizospheres of both plant genotypes were dominated by Proteobacteria and Planctomycetes, 37.5% of dominant OTUs were additionally detected in the wild beet rhizosphere. Analysis of the cultivable fraction confirmed these plant genotype-specific differences at functional level. The proportion of isolates displayed in vitro activity against phytopathogens was lower for wild beet (≤45.8%) than for sugar beet (≤57.5%). Conversely, active isolates from the wild beet exhibited stronger ability to cope with abiotic stresses. From all samples, active isolates of Stenotrophomonas rhizophila were frequently identified. In addition, soil type-specific impacts on the composition of bacterial communities were found: Acidobacteria, Chloroflexi, and Planctomycetes were only detected in plants cultivated in CS; whereas Bacteroidetes and Proteobacteria dominated in PS. Overall, in comparison to modern sugar beets, wild beets were associated with taxonomically and functionally distinct microbiomes.

  18. Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae).

    Science.gov (United States)

    Tennessen, Jacob A; Govindarajulu, Rajanikanth; Liston, Aaron; Ashman, Tia-Lynn

    2013-08-07

    Gynodioecy is a sexual system wherein females coexist with hermaphrodites. It is of interest not only because male-sterile plants are advantageous in plant breeding but also because it can be a crucial step in the evolutionary transition to entirely separate sexes (dioecy) from a hermaphroditic ancestor. The gynodioecious diploid wild strawberry, Fragaria vesca ssp. bracteata (Rosaceae), is a member of a clade with both dioecious and cultivated species, making it an ideal model in which to study the genetics of male sterility. To create a genetic map of F. v. ssp. bracteata, we identified informative polymorphisms from genomic sequencing (3-5x coverage) of two outbred plants from the same population. Using targeted enrichment, we sequenced 200 bp surrounding each of 6575 polymorphisms in 48 F1 offspring, yielding genotypes at 98% of targeted sites with mean coverage >100x, plus more than 600-kb high-coverage nontargeted sequence. With the resulting linkage map of 7802 stringently filtered markers (5417 targeted), we assessed recombination rates and genomic incongruities. Consistent with past work in strawberries, male sterility is dominant, segregates 1:1, and maps to a single location in the female. Further mapping an additional 55 offspring places male sterility in a gene-dense, 338-kb region of chromosome 4. The region is not syntenic with the sex-determining regions in the closely related octoploids, F. chiloensis and F. virginiana, suggesting either independent origins or translocation. The 57 genes in this region do not include protein families known to control male sterility and thus suggest alternate mechanisms for the suppression of male function.

  19. Impact of mistletoe attack (Viscum album ssp. abietis on the radial growth of silver fir. A case study in the North of Eastern Carpathians

    Directory of Open Access Journals (Sweden)

    Cãtãlina Barbu

    2009-12-01

    Full Text Available Viscum album ssp. abietis (Wiesb. Abrom L. is one of the three subspecies of Viscum album L that is frequently encountered in Romanian forests. The mistletoe has notoriously negative effects on trees and forests health. The mistletoe infections not only reduce both height and diameter growth, it can also cause partial or total die-back of the trees. The present study on the incidence of mistletoe (Viscum album ssp. abietis on silver fir (Abies alba increments was carried out in natural stands of the Forest District Gura Humorului (one permanent plot Păltinoasa and one experimental plot Voroneţ, because this location (400-1000 m elevation is characteristic for pure silver fir stands that can be found on the border of Carpathians Mountains at the contact zone with Suceava plateau. Four classes describing the level of infection were distinguished: no infection, low, moderate and strong infection. As only a few of healthy trees (class 0 were found, the comparison was made on the trees from the 1st class of attack. In parasited silver trees development were distinguished 3 phases: i phase 1 - from 1920 till 1945 when the trees that nowadays are falling into the 2nd and 3rd class had similar growth with the ones recorded in the 1st class; ii phase 2 - from 1946 till 1976-1977; during this period the trees had been reducing their growth. The growth of silver fir trees that fall into the 2nd and 3rd classes of parasitism represents 80% of the average growth of 1st class trees; iii phase 3 - from 1977 till 2007 (with a couple of episodes when trees growths from 1st, 2nd and 3rd classes of parasitism were clearly differentiated.

  20. Impact of mistletoe attack (Viscum album ssp. abietis on the radial growth of silver fir. A case study in the North of Eastern Carpathians

    Directory of Open Access Journals (Sweden)

    Catalina Barbu

    2009-11-01

    Full Text Available Viscum album ssp. abietis (Wiesb. Abrom L. is one of the three subspecies of Viscum album L that is frequently encountered in Romanian forests. The mistletoe has notoriously negative effects on trees and forests health. The mistletoe infections not only reduce both height and diameter growth, it can also cause partial or total die-back of the trees. The present study on the incidence of mistletoe (Viscum album ssp. abietis on silver fir (Abies alba increments was carried out in natural stands of the Forest District Gura Humorului (one permanent plot Pãltinoasa and one experimental plot Voronet, because this location (400-1000 m elevation is characteristic for pure silver fir stands that can be found on the border of Carpathians Mountains at the contact zone with Suceava plateau. Four classes describing the level of infection were distinguished: no infection, low, moderate and strong infection.As only a few of healthy trees (class 0 were found, the comparison was made on the trees from the 1st class of attack. In parasited silver trees development were distinguished 3 phases: i phase 1 - from 1920 till 1945 when the trees that nowadays are falling into the 2nd and 3rd class had similar growth with the ones recorded in the 1stclass; ii phase 2 - from 1946 till 1976-1977; during this period the trees had been reducing their growth. The growth of silver fir trees that fall into the 2nd and 3rd classes of parasitism represents 80% of the average growth of 1st class trees; iii phase 3- from 1977 till 2007 (with a couple of episodes when trees growths from 1st,2nd and 3rd classes of parasitism were clearly differentiated.

  1. Effects of fractionated colostrum replacer and vitamins A, D, and E on haptoglobin and clinical health in neonatal Holstein calves challenged with Mycobacterium avium ssp. paratuberculosis.

    Science.gov (United States)

    Krueger, L A; Reinhardt, T A; Beitz, D C; Stuart, R L; Stabel, J R

    2016-04-01

    Thirty Holstein calves were obtained from 2 dairy farms in central Iowa at birth and randomly assigned to 1 of 6 treatment groups: (1) colostrum deprived (CD), no vitamins; (2) colostrum replacer (CR), no vitamins; (3) CR, vitamin A; (4) CR, vitamin D3; (5) CR, vitamin E; and (6) CR, vitamins A, D3, E, with 5 calves per treatment in a 14-d study. Calves were fed pasteurized whole milk (CD) or fractionated colostrum replacer (CR) at birth (d 0) and injected with vitamins according to treatment group. From d 1 through d 14 of the study, all calves were fed pasteurized whole milk (PWM) supplemented with vitamins as assigned. All calves were inoculated with Mycobacterium avium ssp. paratuberculosis on d 1 and 3 of age. Calves fed CR acquired IgG1 and haptoglobin in serum within 24 h of birth, whereas CD calves did not. The CR-fed calves were 2.5 times less likely to develop scours, and CR calves supplemented with vitamins D3 and E also demonstrated a decreased incidence of scours. Serum vitamin levels of A, D, and E increased within treatment group by d 7 and 14 of the study. Interestingly, synergistic effects of supplemental vitamins A, D3, and E on serum 25-(OH)-vitamin D were observed at d 7, resulting in higher levels than in calves administered vitamin D only. Further, vitamin D3 deficiency was observed in CD and CR calves fed a basal diet of pasteurized whole milk and no supplemental vitamins. Colonization of tissues with Mycobacterium avium ssp. paratuberculosis was negligible and was not affected by colostrum feeding or vitamin supplementation. Results demonstrated passive transfer of haptoglobin to neonatal calves, and potential health benefits of supplemental vitamins D3 and E to calves fed pasteurized whole milk.

  2. Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima—ancestor of all beet crops—and modern sugar beets

    Science.gov (United States)

    Zachow, Christin; Müller, Henry; Tilcher, Ralf; Berg, Gabriele

    2014-01-01

    The structure and function of the plant microbiome is driven by plant species and prevailing environmental conditions. Effectuated by breeding efforts, modern crops diverge genetically and phenotypically from their wild relatives but little is known about consequences for the associated microbiota. Therefore, we studied bacterial rhizosphere communities associated with the wild beet B. vulgaris ssp. maritima grown in their natural habitat soil from coastal drift lines (CS) and modern sugar beets (Beta vulgaris ssp. vulgaris) cultivated in CS and potting soil (PS) under greenhouse conditions. Analysis of 16S rRNA gene fingerprints and pyrosequencing-based amplicon libraries revealed plant genotype- and soil-specific microbiomes. Wild beet plants harbor distinct operational taxonomic units (OTUs) and a more diverse bacterial community than the domesticated sugar beet plants. Although the rhizospheres of both plant genotypes were dominated by Proteobacteria and Planctomycetes, 37.5% of dominant OTUs were additionally detected in the wild beet rhizosphere. Analysis of the cultivable fraction confirmed these plant genotype-specific differences at functional level. The proportion of isolates displayed in vitro activity against phytopathogens was lower for wild beet (≤45.8%) than for sugar beet (≤57.5%). Conversely, active isolates from the wild beet exhibited stronger ability to cope with abiotic stresses. From all samples, active isolates of Stenotrophomonas rhizophila were frequently identified. In addition, soil type-specific impacts on the composition of bacterial communities were found: Acidobacteria, Chloroflexi, and Planctomycetes were only detected in plants cultivated in CS; whereas Bacteroidetes and Proteobacteria dominated in PS. Overall, in comparison to modern sugar beets, wild beets were associated with taxonomically and functionally distinct microbiomes. PMID:25206350

  3. New Antifungal Bacteriocin-Synthesizing Strains of Lactococcus lactis ssp. lactis as the Perspective Biopreservatives for Protection of Raw Smoked Sausages

    Directory of Open Access Journals (Sweden)

    L. G. Stoyanova

    2010-01-01

    Full Text Available Problem statement: Screening for the effective bacteriocin-synthesizing strains of Lactococcus lactis as the perspective biopreservatives was performed. We used a raw milk and dairy products from different climatic regions as well as from powerful drinks of mixed lactic acid and alcoholic fermentation: kurunga, kumiss and Iranian Dough, that were widely used by local population to prevent diseases. Approach: The special interest was paid to isolates of lactococci with antagonistic activity. According to their morphological, cultural, physiological, biochemical properties and sequence of 16S rRNA gene they were identified as Lactococcus lactis ssp. lactis. Only nine from the selected 94 strains expressed a broad spectrum of activity against Gram-positive and Gramnegative bacteria including pathogens (Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, Proteus vulgaris, Salmonella gallinarum, moulds (Aspergillus, Fusarium, Penicillium genera, as well as yeasts (Rhodotorula, Candida. Results: It reveals the unique biological properties for isolated natural strains of Lactococcus lactis species. Most effective new bacteriocin-synthesizing strains 194 and K-205 were isolated from raw cow milk and kurunga from Buryatia. These strains had high antibiotic activity up to 3600 and 2700 IU mL-1 as compared to nisin and up to 2500-1700 IU mL-1 as compared to fungicidal antibiotic nistatin. In our experiments we used raw smoked sausages that were infected with fungi. The identification of this infection showed the presence of Eurotium repens de Bary on the sausages. Treatment of the raw smoked sausages with cultural broth of L.lactis ssp. lactis 194 and K-205 inhibited growth of these microorganisms. After treatment the sausages had longer shelf-life and was in accordance with basal production data (Russian State Standard Specification 16131-86. Conclusion: The results of this study indicated that the treatment with

  4. A novel Zea mays ssp. mexicana L. MYC-type ICE-like transcription factor gene ZmmICE1, enhances freezing tolerance in transgenic Arabidopsis thaliana.

    Science.gov (United States)

    Lu, Xiang; Yang, Lei; Yu, Mengyuan; Lai, Jianbin; Wang, Chao; McNeil, David; Zhou, Meixue; Yang, Chengwei

    2017-04-01

    The annual Zea mays ssp. mexicana L., a member of the teosinte group, is a close wild relative of maize and thus can be effectively used in maize improvement. In this study, an ICE-like gene, ZmmICE1, was isolated from a cDNA library of RNA-Seq from cold-treated seedling tissues of Zea mays ssp. mexicana L. The deduced protein of ZmmICE1 contains a highly conserved basic helix-loop-helix (bHLH) domain and C-terminal region of ICE-like proteins. The ZmmICE1 protein localizes to the nucleus and shows sumoylation when expressed in an Escherichia coli reconstitution system. In addition, yeast one hybrid assays indicated that ZmmICE1 has transactivation activities. Moreover, ectopic expression of ZmmICE1 in the Arabidopsis ice1-2 mutant increased freezing tolerance. The ZmmICE1 overexpressed plants showed lower electrolyte leakage (EL), reduced contents of malondialdehyde (MDA). The expression of downstream cold related genes of Arabidopsis C-repeat-binding factors (AtCBF1, AtCBF2 and AtCBF3), cold-responsive genes (AtCOR15A and AtCOR47), kinesin-1 member gene (AtKIN1) and responsive to desiccation gene (AtRD29A) was significantly induced when compared with wild type under low temperature treatment. Taken together, these results indicated that ZmmICE1 is the homolog of Arabidopsis inducer of CBF expression genes (AtICE1/2) and plays an important role in the regulation of freezing stress response.

  5. Characterization of a novel gene, BcMF7, that is expressed preferentially in pollen of Brassica campestris L. ssp. Chinensis Makino

    Institute of Scientific and Technical Information of China (English)

    HUANG Li; CAO JiaShu; ZHANG YuChao; YE YiQun

    2007-01-01

    Pollen formation is important for plant sexual reproduction, To identify the genes that are involved in pollen formation, we performed the genome-wide transcriptional profiling in the flower buds of both male meiotic cytokinesis (mmc) mutant and its wild-type plants of Brassica campestris L. ssp. chinensis, syn. B. rapa L. ssp. chinensis, cDNA-amplified fragment length polymorphism (cDNA-AFLP) analysis showed that the mmc mutation resulted in changes in expression of a variety of genes. BcMF7, a transcript-derived fragment (TDF) accumulated in the wild-type flower buds was further characterized.The BcMF7 gene has 1161 bp in length with two introns. The full-length BcMF7 cDNA has 609 bp in length and encodes a protein of 129 amino acids. The deduced amino acid sequence of BcMF7 protein shares no similarity to any function-known protein in Swiss-Prot database, but has 8 protein kinase C phosphorylation sites, 2 casein kinase Ⅱ phosphorylation sites, 2 tyrosine kinase phosphorylation sites,2 N-glycosylation sites and 2 N-myristoylation sites. Spatial and temporal expression patterns analysis showed that BcMF7 was expressed exclusively in pollen. The expression signal of BcMF7 was first detected at the tetrad stage of microspore development, reached a peak level at the uninucleate stage,and decreased to a slightly low level at the mature pollen stage. All these results show that BcMF7 may play a certain role in the signal transduction during pollen development.

  6. Characterization of a novel gene, BcMF7,that is expressed preferentially in pollen of Brassica campestris L.ssp. chinensis Makino

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Pollen formation is important for plant sexual reproduction. To identify the genes that are involved in pollen formation, we performed the genome-wide transcriptional profiling in the flower buds of both male meiotic cytokinesis (mmc) mutant and its wild-type plants of Brassica campestris L. ssp. chinen-sis, syn. B. rapa L. ssp. chinensis. cDNA-amplified fragment length polymorphism (cDNA-AFLP) analy-sis showed that the mmc mutation resulted in changes in expression of a variety of genes. BcMF7, a transcript-derived fragment (TDF) accumulated in the wild-type flower buds was further characterized. The BcMF7 gene has 1161 bp in length with two introns. The full-length BcMF7 cDNA has 609 bp in length and encodes a protein of 129 amino acids. The deduced amino acid sequence of BcMF7 protein shares no similarity to any function-known protein in Swiss-Prot database, but has 8 protein kinase C phosphorylation sites, 2 casein kinase II phosphorylation sites, 2 tyrosine kinase phosphorylation sites, 2 N-glycosylation sites and 2 N-myristoylation sites. Spatial and temporal expression patterns analysis showed that BcMF7 was expressed exclusively in pollen. The expression signal of BcMF7 was first detected at the tetrad stage of microspore development, reached a peak level at the uninucleate stage, and decreased to a slightly low level at the mature pollen stage. All these results show that BcMF7 may play a certain role in the signal transduction during pollen development.

  7. Space Shuttle Program (SSP) Orbiter Main Propulsion System (MPS) Gaseous Hydrogen (GH2) Flow Control Valve (FCV) Poppet Eddy Current (EC) Inspection Probability of Detection (POD) Study. Volume 2; Appendices

    Science.gov (United States)

    Piascik, Robert S.; Prosser, William H.

    2011-01-01

    The Director of the NASA Engineering and Safety Center (NESC), requested an independent assessment of the anomalous gaseous hydrogen (GH2) flow incident on the Space Shuttle Program (SSP) Orbiter Vehicle (OV)-105 during the Space Transportation System (STS)-126 mission. The main propulsion system (MPS) engine #2 GH2 flow control valve (FCV) LV-57 transition from low towards high flow position without being commanded. Post-flight examination revealed that the FCV LV-57 poppet had experienced a fatigue failure that liberated a section of the poppet flange. The NESC assessment provided a peer review of the computational fluid dynamics (CFD), stress analysis, and impact testing. A probability of detection (POD) study was requested by the SSP Orbiter Project for the eddy current (EC) nondestructive evaluation (NDE) techniques that were developed to inspect the flight FCV poppets. This report contains the Appendices to the main report.

  8. Space Shuttle Program (SSP) Orbiter Main Propulsion System (MPS) Gaseous Hydrogen (GH2) Flow Control Valve (FCV) Poppet Eddy Current (EC) Inspection Probability of Detection (POD) Study. Volume 1

    Science.gov (United States)

    Piascik, Robert S.; Prosser, William H.

    2011-01-01

    The Director of the NASA Engineering and Safety Center (NESC), requested an independent assessment of the anomalous gaseous hydrogen (GH2) flow incident on the Space Shuttle Program (SSP) Orbiter Vehicle (OV)-105 during the Space Transportation System (STS)-126 mission. The main propulsion system (MPS) engine #2 GH2 flow control valve (FCV) LV-57 transition from low towards high flow position without being commanded. Post-flight examination revealed that the FCV LV-57 poppet had experienced a fatigue failure that liberated a section of the poppet flange. The NESC assessment provided a peer review of the computational fluid dynamics (CFD), stress analysis, and impact testing. A probability of detection (POD) study was requested by the SSP Orbiter Project for the eddy current (EC) nondestructive evaluation (NDE) techniques that were developed to inspect the flight FCV poppets. This report contains the findings and recommendations from the NESC assessment.

  9. Insecticidal efficacy of silica gel with Juniperus oxycedrus ssp. oxycedrus (Pinales: Cupressaceae) essential oil against Sitophilus oryzae (Coleoptera: Curculionidae) and Tribolium confusum (Coleoptera: Tenebrionidae).

    Science.gov (United States)

    Athanassiou, Christos G; Kavallieratos, Nickolas C; Evergetis, Epameinondas; Katsoula, Anna-Maria; Haroutounian, Serkos A

    2013-08-01

    Laboratory bioassays were carried out to evaluate the effect of silica gel enhanced with the essential oil (EO) of Juniperus oxycedrus L. ssp. oxycedrus (Pinales: Cupressaceae) (derived from berry specimens from Greece) against adults of Sitophilus oryzae (L.) (Coleoptera: Curculionidae) and Tribolium confusum Jacquelin du Val (Coleoptera: Tenebrionidae). For that purpose, a dry mixture consisting of 500 mg of silica gel that had absorbed 2.18 mg of EO (total weight: 502.18 mg) was tested at three doses; 0.125, 0.250, and 0.5 g/kg of wheat, corresponding to 125, 250, and 500 ppm, respectively, and silica gel alone at 0.5 g/kg of wheat corresponding to 500 ppm, at different exposure intervals (24 and 48 h and 7 and 14 d for S. oryzae; 24 and 48 h and 7, 14, and 21 d for T. confusum). The chemical content of the specific EO was determined by gas chromatography (GC)-mass spectrometry (MS) analyses indicating the presence of 31 constituents with myrcene and germacrene-D being the predominant compounds. The bioactivity results for S. oryzae indicated that 48 h of exposure in wheat resulted in an 82% mortality for treatment with 500 ppm of the enhanced silica gel. For 7 d of exposure, 100 and 98% of S. oryzae adults died when they were treated with 500 and 250 ppm of enhanced silica gel, respectively. At 14 d of exposure, all adults died both at 250 and 500 ppm of enhanced silica gel. At 48 h, 7 and 14 d of exposure significantly less S. oryzae adults died in wheat treated with silica gel alone than at 250 or 500 ppm of enhanced silica gel. In the case of T. confusum, at 7 d of exposure, mortality in wheat treated with silica gel only was significantly higher in comparison to the other treatments. At the 14 d of exposure mortality in wheat treated with 500 ppm of silica gel alone was significantly higher than 125 and 250 ppm of the enhanced silica gel. Similar trends were also noted at 21 d of exposure, indicating that there is no enhancement effect from the addition of

  10. Effect of feeding heat-treated colostrum on risk for infection with Mycobacterium avium ssp. paratuberculosis, milk production, and longevity in Holstein dairy cows.

    Science.gov (United States)

    Godden, S M; Wells, S; Donahue, M; Stabel, J; Oakes, J M; Sreevatsan, S; Fetrow, J

    2015-08-01

    In summer 2007, a randomized controlled field trial was initiated on 6 large Midwest commercial dairy farms to investigate the effect of feeding heat-treated (HT) colostrum on transmission of Mycobacterium avium ssp. paratuberculosis (MAP) and on future milk production and longevity within the herd. On each farm, colostrum was collected daily from fresh cows, pooled, divided into 2 aliquots, and then 1 aliquot was heat-treated in a commercial batch pasteurizer at 60°C for 60min. A sample from each batch of colostrum was collected for PCR testing (MAP-positive vs. MAP-negative). Newborn heifer calves were removed from the dam within 30 to 60min of birth and systematically assigned to be fed 3.8 L of either fresh (FR; n=434) or heat-treated (HT; n=490) colostrum within 2h of birth. After reaching adulthood (>2 yr old), study animals were tested once annually for 3 yr (2010, 2011, 2012) for infection with MAP using serum ELISA and fecal culture. Lactation records describing milk production data and death or culling events were collected during the 3-yr testing period. Multivariable model logistic and linear regression was used to investigate the effect of feeding HT colostrum on risk for testing positive to MAP during the 3-yr testing period (positive/negative; logistic regression) and on first and second lactation milk yield (kg/cow; linear regression), respectively. Cox proportional hazards regression was used to investigate the effect of feeding HT colostrum on risk and time to removal from the herd. Fifteen percent of all study animals were fed PCR-positive colostrum. By the end of the 3-yr testing period, no difference was noted in the proportion of animals testing positive for MAP, with either serum ELISA or fecal culture, when comparing the HT group (10.5%) versus the FR group (8.1%). There was no effect of treatment on first- (HT=11.797kg; FR=11,671kg) or second-lactation (HT=11,013kg; FR=11,235kg) milk production. The proportion of cows leaving the herd by

  11. Untersuchungen zur Beeinflussung der α-Amylase-Aktivität durch Pflanzenextrakte und polyphenolische Reinstoffe unter besonderer Berücksichtigung des Einflusses von Cynara cardunculus L. ssp. flavescens Wikl. und seiner Inhaltsstoffe

    OpenAIRE

    Funke, Ines

    2010-01-01

    The creation of a microplate-reader-based kinetic assay led to a rapid screening of plant extracts and pure compounds. Plant extracts were found to be able to inhibit the α-amylase activity. Cynara cardunculus L. ssp. flavescens Wikl., Melissa officinalis L., Pyrus communis L., Vaccinium myrtillus L., Malus domestica Borkh., Balanites aegyptiaca (L.) Del., Tamarindus indica L. were found to be active in the used in vitro test model. A performed bioguided extraction showed that the active...

  12. Rapid DNA typing for HLA-C using sequence-specific primers (PCR-SSP): identification of serological and non-serologically defined HLA-C alleles including several new alleles.

    Science.gov (United States)

    Bunce, M; Welsh, K I

    1994-01-01

    Detection of HLA-C antigens by complement mediated cytotoxicity using human alloantisera is often difficult. Between 20 to 40% of individuals in every race have undetectable HLA-C locus antigens and 9 out of the 29 sequenced HLA-C alleles so far published encode serologically undetected antigens. In addition, HLA-C molecules are expressed at the cell surface at about 10% of the levels of HLA-A and HLA-B. Recently, amplification of DNA using sequence-specific primers (PCR-SSP) has proved a reliable and rapid method for typing HLA-DR, HLA-DQA and HLA-DQB genes. PCR-SSP takes two hours to perform and is therefore suitable for the genotyping of cadaveric donors. We have designed a set of primers which will positively identify the HLA-C alleles corresponding to the serologically defined series HLA-Cw1, Cw2, Cw3, Cw4, Cw5, Cw6, Cw7 and Cw8. The serologically undetectable alleles have also been detected in groups according to sequence homology. In addition, three new unsequenced variants have been identified. DNA samples from 56 International Histocompatibility Workshop reference cell lines and 103 control individuals have been typed by the HLA-C PCR-SSP technique. 4/56 cell line types and 11/103 normal control individuals types were discrepant with the reported serological types. All combinations of serologically detectable and most of the serologically blank HLA-C antigens can be readily identified. DNA typing for HLA-Cw by PCR-SSP can take as little as 130 minutes from start to finish, including DNA preparation.

  13. A NEW RECORD OF SUBSPECIES TO CHINA(LEGUMINOSAE)--MUCUNA HAINANENSIS SSP. MULTILAMELLATA%中国一新记录亚种--多褶果黧豆(豆科)

    Institute of Scientific and Technical Information of China (English)

    朱相云

    2001-01-01

    作者在给中国科学院植物研究所生态室鉴定标本时,发现一西藏新记录属--黧豆属(Mucuna Adans.), 所鉴定标本是多褶果黧豆Mucuna hainanensis ssp. multilamellata Wilmot-Dear,为一中国新记录亚种, 现特予报道.

  14. Recent invasion of the mountain birch Betula pubescens ssp. tortuosa above the treeline due to climate change: genetic and ecological study in northern Sweden

    OpenAIRE

    Truong, C.; Palmé, A. E.; Felber, François

    2008-01-01

    Mountain birch, Betula pubescens ssp. tortuosa, forms the treeline in northern Sweden. A recent shift in the range of the species associated with an elevation of the treeline is commonly attributed to climate warming. Using microsatellite markers, we explored the genetic structure of populations along an altitudinal gradient close to the treeline. Low genetic differentiation was found between populations, whereas high genetic diversity was maintained within populations. High level of gene flo...

  15. Cu,Cr and As determination in preserved woods (Eucalyptus ssp.) by X-ray fluorescence spectrometries; Determinacao de cobre, cromo e arsenio em madeira preservada (Eucalyptus sp.) pelas espectrometrias de fluorescencia de raios X

    Energy Technology Data Exchange (ETDEWEB)

    Pereira Junior, Sergio Matias

    2014-07-01

    Brazil produces around 2.2 millions of cubic meters of treated wood to meet the annual demand of railway, electric, rural and construction sectors. The most used wood species are eucalyptus (Eucalyptus ssp.) and pine (Pinus ssp.).The treated woods used for poles, sleepers, fence posts and plywoods should be according to Brazilian norms requirements. The most usual wood preservative products used in Brazil are CCA (chromated copper arsenate) and CCB (copper chromium and boron salt). The analytical methods, such as flame atomic absorption spectrometry (FAAS), plasma inductively coupled optical emission spectrometry (ICPOES) and X-ray fluorescence spectrometry (XRFS) have been used for the analytical control of those treatment processes. In this work, the eucalyptus trees (Eucalyptus ssp) samples was obtained from Minas Gerais State, Brazil, cut plantation areas. Under pressure, eucalyptus wood samples were submitted to different concentration of CCA solution reaching 3.9, 6.7, 9.1, 12.4 and 14.0 kg of CCA by m-³ sapwood retentions. Samples in cylinders and sawdust forms were obtained from treated wood samples. Copper, chromium and arsenic determination was performed using the energy dispersive X-ray fluorescence spectrometry (EDXRFS), portable X-ray fluorescence spectrometry (PXRFS), flame atomic absorption spectrometry (FAAS) and instrumental neutron activation analysis. In this work, the method of analysis, sensitivity, precision and accuracy performances of the related techniques were outlined. (author)

  16. Molecular cloning and characterization of a novel pollen predominantly membrane protein gene BcMF12 from Brassica campestris ssp. chinensis.

    Science.gov (United States)

    Song, Jianghua; Zhang, Lixin; Cao, Jiashu

    2009-11-01

    A novel membrane protein gene, BcMF12, was isolated from Chinese cabbage (Brassica campestris L. ssp. chinensis Makino) using rapid amplification of the cDNA ends based on a pollen-specific cDNA fragment (DN237936). The cDNA was 1,155 bp in length with an open reading frame of 894 bp capable of encoding a putative polypeptide of 297 amino acids with an estimated molecular mass of 34.6 kDa and a predicted isoelectric point of 9.6. Comparative and bioinformatics analyses revealed that BcMF12 showed high similarities with some membrane protein sequences previously published in the public database and contained six highly conserved transmembrane domains corresponding to six highly hydrophobic regions. This indicates that BcMF12 may be a putative membrane protein. RNA gel blot analysis indicated that the transcripts of BcMF12 were abundant in the flower bud, flower and anther, but not detected in the root, stem, leaf and pistil. Moreover, the BcMF12 transcripts were detectable at the late stages of pollen development. Morphological investigations of pollen from the BcMF12 antisense transgenic plants showed that most of pollen grains of transgenic plants were abnormal. These results strongly suggest that BcMF12 is a novel pollen-preferentially membrane protein which play an important role during the pollen development in Chinese cabbage.

  17. Molecular surveillance of spotted fever group rickettsioses in wildlife and detection of Rickettsia sibirica in a Topi (Damaliscus lunatus ssp. jimela) in Kenya.

    Science.gov (United States)

    Ndeereh, David; Thaiyah, Andrew; Muchemi, Gerald; Miyunga, Antoinette A

    2017-01-30

    Spotted fever group rickettsioses are a group of tick-borne zoonotic diseases caused by intracellular bacteria of the genus Rickettsia. The diseases are widely reported amongst international travellers returning from most sub-Saharan Africa with fever, yet their importance in local populations largely remains unknown. Although this has started to change and recently there have been increasing reports of the diseases in livestock, ticks and humans in Kenya, they have not been investigated in wildlife. We examined the presence, prevalence and species of Rickettsia present in wildlife in two regions of Kenya with a unique human-wildlife-livestock interface. For this purpose, 79 wild animals in Laikipia County and 73 in Maasai Mara National Reserve were sampled. DNA extracted from blood was tested using the polymerase chain reaction (PCR) to amplify the intergenic spacer rpmE-tRNAfMet and the citrate synthase-encoding gene gltA. Rickettsial DNA was detected in 2 of the 79 (2.5%) animals in Laikipia and 4 of the 73 (5.5%) in Maasai Mara. The PCR-positive amplicons of the gltA gene were sequenced to determine the detected Rickettsia species. This revealed Rickettsia sibirica in a Topi (Damaliscus lunatus ssp. jimela). This is the first report of spotted fever group rickettsioses in wildlife and the first to report R. sibirica in Kenya. The finding demonstrates the potential role of wild animals in the circulation of the diseases.

  18. Effect of the absence of the CcpA gene on growth, metabolic production, and stress tolerance in Lactobacillus delbrueckii ssp. bulgaricus.

    Science.gov (United States)

    Li, C; Sun, J W; Zhang, G F; Liu, L B

    2016-01-01

    The catabolite control protein A (CcpA) is a kind of multi-effect regulatory protein. In the study, the effect of the inactivation of CcpA and aerobic conditions on the growth, metabolic production, and stress tolerance to heat, oxidative, and cold stresses in Lactobacillus delbrueckii ssp. bulgaricus was investigated. Results showed that inactivation of CcpA distinctly hindered growth. Total lactic acid concentration was significantly lower in aerobiosis for both strains and was lower for the mutant strain than L. bulgaricus. Acetic acid production from the mutant strain was higher than L. bulgaricus in aerobiosis compared with anaerobiosis. Enzyme activities, lactate dehydrogenase (LDH), phosphate fructose kinase (PFK), pyruvate kinase (PK), and pyruvic dehydrogenase (PDH), were significantly lower in the mutant strain than L. bulgaricus. The diameters of inhibition zone were 13.59 ± 0.02 mm and 9.76 ± 0.02 mm for L. bulgaricus in anaerobiosis and aerobiosis, respectively; and 8.12 ± 0.02 mm and 7.38 ± 0.02 mm for the mutant in anaerobiosis and aerobiosis, respectively. For both strains, cells grown under aerobic environment possess more stress tolerance. This is the first study in which the CcpA-negative mutant of L. bulgaricus is constructed and the effect of aerobic growth on stress tolerance of L. bulgaricus is evaluated. Although aerobic cultivation does not significantly improve growth, it does improve stress tolerance.

  19. Sensitivity of solid culture, broth culture, and real-time PCR assays for milk and colostrum samples from Mycobacterium avium ssp. paratuberculosis-infectious dairy cows.

    Science.gov (United States)

    Laurin, Emilie; McKenna, Shawn; Chaffer, Marcelo; Keefe, Greg

    2015-12-01

    Mycobacterium avium ssp. paratuberculosis (MAP) can be shed in feces, milk, and colostrum. The goal of this study was to assess assays that detect MAP in these sample types, including effects of lactation stage or season. Understanding the performance of these assays could improve how they are used, limiting the risk of infection to calves. Forty-six previously confirmed MAP-positive cows from 7 Atlantic Canadian dairy farms were identified for colostrum sampling and monthly sampling of milk and feces over a 12-mo period. Samples were assayed for MAP using solid culture, broth culture, and direct real-time PCR (qPCR). Across assay types, test sensitivity when applied to milk samples averaged 25% of that when applied to fecal samples. For colostrum samples, sensitivity depended on assay type, with sensitivity of qPCR being approximately 46% of that in feces. Across sample types, sensitivity of qPCR was higher than that of the other assays. Sensitivity of qPCR, when applied to milk samples, was significantly higher in summer than in other seasons. Summer was also the season with highest agreement between milk and fecal samples collected within the same month. Our results suggest that qPCR would detect more cows shedding MAP in their milk and colostrum than solid or broth culture assays, particularly during the summer, thus providing better management information to limit exposure of calves to this infectious organism.

  20. Full scale test SSP 34m blade, edgewise loading LTT. Extreme load and PoC{sub I}nvE Data report

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Magda; Roczek-Sieradzan, A.; Jensen, Find M. (and others)

    2010-09-15

    This report is the second report covering the research and demonstration project 'Experimental blade research: Structural mechanisms in current and future large blades under combined loading', supported by the EUDP program. A 34m wind turbine blade from SSP-Technology A/S has been tested in edgewise direction (LTT). The blade has been submitted to thorough examination by means of strain gauges, displacement transducers and a 3D optical measuring system. This data report presents results obtained during full scale testing of the blade up to 80% Risoe load, where 80% Risoe load corresponds to 100% certification load. These pulls at 80% Risoe load were repeated and the results from these pulls were compared. The blade was reinforced according to a Risoe DTU invention, where the trailing edge panels are coupled. The coupling is implemented to prevent the out of plane deformations and to reduce peeling stresses in the adhesive joints. Test results from measurements with the reinforcement have been compared to results without the coupling. The report presents only the relevant results for the 80% Risoe load and the results applicable for the investigation of the influence of the invention on the profile deformation. (Author)