Concentration of radiocesium in rice, vegetables, and fruits cultivated in evacuation area at Okuma town, Fukushima

International Nuclear Information System (INIS)

Ohse, Kenji; Kitayama, Kyo; Kanno, Akira; Suzuki, Chika; Kawatsu, Kencho; Tsukada, Hirofumi; Suenaga, Seiichi; Matsumoto, Kiyoyuki

2013-01-01

Rice, vegetables, and fruits were cultivated in the evacuation area at Okuma town, and the radiocesium concentration of the crop samples cultivated in contaminated and decontaminated soil was compared. Decrease of the concentration in every crop by decontamination was observed. The TF of brown rice was higher than previous reports. (author)

Agriculture and the promotion of insect pests: rice cultivation in river floodplains and malaria vectors in The Gambia

Directory of Open Access Journals (Sweden)

Louca Vasilis

2009-07-01

Full Text Available Abstract Background Anthropogenic modification of natural habitats can create conditions in which pest species associated with humans can thrive. In order to mitigate for these changes, it is necessary to determine which aspects of human management are associated with the promotion of those pests. Anopheles gambiae, the main Africa malaria vector, often breeds in rice fields. Here the impact of the ancient practice of 'swamp rice' cultivation, on the floodplains of the Gambia River, on the production of anopheline mosquitoes was investigated. Methods Routine surveys were carried out along 500 m transects crossing rice fields from the landward edge of the floodplains to the river during the 2006 rainy season. Aquatic invertebrates were sampled using area samplers and emergence traps and fish sampled using nets. Semi-field experiments were used to investigate whether nutrients used for swamp rice cultivation affected mosquito larval abundance. Results At the beginning of the rainy season rice is grown on the landward edge of the floodplain; the first area to flood with fresh water and one rich in cattle dung. Later, rice plants are transplanted close to the river, the last area to dry out on the floodplain. Nearly all larval and adult stages of malaria vectors were collected 0–100 m from the landward edge of the floodplains, where immature rice plants were grown. These paddies contained stagnant freshwater with high quantities of cattle faeces. Semi-field studies demonstrated that cattle faeces nearly doubled the number of anopheline larvae compared with untreated water. Conclusion Swamp rice cultivation creates ideal breeding sites for malaria vectors. However, only those close to the landward edge harboured vectors. These sites were productive since they were large areas of standing freshwater, rich in nutrients, protected from fish, and situated close to human habitation, where egg-laying mosquitoes from the villages had short distances to

Energy and environmental impact analysis of rice cultivation and straw management in northern Thailand.

Science.gov (United States)

Yodkhum, Sanwasan; Sampattagul, Sate; Gheewala, Shabbir H

2018-04-17

Rice cultivation and energy use for rice production can produce the environmental impacts, especially related to greenhouse gas (GHG) emissions. Also, rice straw open burning by farmers generally practiced after harvesting stage in Thailand for removing the residues in the rice field is associated with emissions of air pollutants, especially particulate matter formation that affects human health and global climate. This study assessed the environmental burdens, consisting of GHG emissions, energy use, and particulate matter formation (PM10), from rice cultivation in Thailand by life cycle assessment (LCA) and compared the environmental burdens of rice straw management scenarios: open burning, incorporation into soil, and direct combustion for electricity generation. The data were collected from the rice production cooperative in Chiang Mai province, northern Thailand, via onsite records and face-to-face questionnaires in 2016. The environmental impacts were evaluated from cradle-to-farm gate. The results showed that the total GHG emissions were 0.64 kg CO 2 -eq per kilogram of paddy rice, the total energy use was 1.80 MJ per kilogram of paddy rice and the PM10 emissions were 0.42 g PM10-eq per kilogram of paddy rice. The results of rice straw management scenarios showed that rice straw open burning had the highest GHG and PM10 emissions. However, rice straw utilization by incorporation into soil and direct combustion for electricity generation could reduce these impacts substantially.

Rice and foxtail millet cultivation reconstructed from weed seed assemblages in the Chengtoushan site, central China

International Nuclear Information System (INIS)

Nasu, H.; Yasuda, Y.; Momohara, A.; Jiejun, H.

2005-01-01

Full text: Crop weeds have been successfully used for evaluation of farming practices in archaeological sites and reconstruction of the environmental condition. In rice agricultural sites in East Asia, however, a few studies of crop remains have been attempted. We evaluated the crop husbandry based on plant macrofossils including crop grains and weed seeds in the Chengtoushan site, Hunan Province, central China, which is one of the oldest rice agricultural site around the Yangtze River Basin. In the moat surrounding the site that is located on a loess plateau that juts out into the alluvial plain, we recognized three cultural layers during the Daxi Culture. Plant macrofossils in silty clay deposits in the moat consist of abundant rice and foxtail millet grains with many weed seeds. Radiocarbon age of these fossils shows that rice and foxtail millet cultivation dated back to 6400 cal. years B.P. The weed seed composition characterizes farmland and ruderal environments in the site surrounded by the moat. We assumed foxtail millet and rice cultivation practiced within the site on loess plateau, along with a paddy style rice cultivation in the alluvial lowland outside of the site. (author)

Mapping regional risks from climate change for rainfed rice cultivation in India.

Science.gov (United States)

Singh, Kuntal; McClean, Colin J; Büker, Patrick; Hartley, Sue E; Hill, Jane K

2017-09-01

Global warming is predicted to increase in the future, with detrimental consequences for rainfed crops that are dependent on natural rainfall (i.e. non-irrigated). Given that many crops grown under rainfed conditions support the livelihoods of low-income farmers, it is important to highlight the vulnerability of rainfed areas to climate change in order to anticipate potential risks to food security. In this paper, we focus on India, where ~ 50% of rice is grown under rainfed conditions, and we employ statistical models (climate envelope models (CEMs) and boosted regression trees (BRTs)) to map changes in climate suitability for rainfed rice cultivation at a regional level (~ 18 × 18 km cell resolution) under projected future (2050) climate change (IPCC RCPs 2.6 and 8.5, using three GCMs: BCC-CSM1.1, MIROC-ESM-CHEM, and HadGEM2-ES). We quantify the occurrence of rice (whether or not rainfed rice is commonly grown, using CEMs) and rice extent (area under cultivation, using BRTs) during the summer monsoon in relation to four climate variables that affect rice growth and yield namely ratio of precipitation to evapotranspiration ( PER ), maximum and minimum temperatures ( T max and T min ), and total rainfall during harvesting. Our models described the occurrence and extent of rice very well (CEMs for occurrence, ensemble AUC = 0.92; BRTs for extent, Pearson's r = 0.87). PER was the most important predictor of rainfed rice occurrence, and it was positively related to rainfed rice area, but all four climate variables were important for determining the extent of rice cultivation. Our models project that 15%-40% of current rainfed rice growing areas will be at risk (i.e. decline in climate suitability or become completely unsuitable). However, our models project considerable variation across India in the impact of future climate change: eastern and northern India are the locations most at risk, but parts of central and western India may benefit from increased

To What Extent Do Improved Practices Increase Productivity of Small-Scale Rice Cultivation in A Rain-fed Area? : Evidence from Tanzania

OpenAIRE

Yuko Nakano; Yuki Tanaka; Keijiro Otsuka

2014-01-01

This paper investigates the impact of training provided by a large-scale private farm on the performance of surrounding small-scale rice farmers in a rain-fed area in Tanzania. We found that the training effectively enhances the adoption of improved rice cultivation practices, paddy yield, and profit of rice cultivation by small-holder farmers. In fact, the trainees achieve paddy yield of 5 tons per hectare on average, which is remarkably high for rain-fed rice cultivation. Our results sugges...

evaluation of nutrients status of soils under rice cultivation in cross ...

African Journals Online (AJOL)

CULTIVATION IN CROSS RIVER STATE, NIGERIA. I. N. ONYEKWERE, A. G. ... KEYWORDS: Evaluation, Nutrient status, Soils, Cross River. ... countries like India, Japan, Taiwan and South Korea. ... which the rice culture can be established.

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

Directory of Open Access Journals (Sweden)

Li Xin

2012-07-01

Full Text Available Abstract Background DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza sativa ssp. japonica, indica and their wild relatives, Oryza rufipogon and Oryza nivara. Results The overall methylation level of rice genomes is four times higher than that of Arabidopsis. Consistent with the results reported for Arabidopsis, methylation in promoters represses gene expression while gene-body methylation generally appears to be positively associated with gene expression. Interestingly, we discovered that methylation in gene transcriptional termination regions (TTRs can significantly repress gene expression, and the effect is even stronger than that of promoter methylation. Through integrated analysis of genomic, DNA methylomic and transcriptomic differences between cultivated and wild rice, we found that primary DNA sequence divergence is the major determinant of methylational differences at the whole genome level, but DNA methylational difference alone can only account for limited gene expression variation between the cultivated and wild rice. Furthermore, we identified a number of genes with significant difference in methylation level between the wild and cultivated rice. Conclusions The single-base resolution methylomes of rice obtained in this study have not only broadened our understanding of the mechanism and function of DNA methylation in plant genomes, but also provided valuable data for future studies of rice epigenetics and the epigenetic differentiation between wild and cultivated rice.

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

DEFF Research Database (Denmark)

Xu, Xun; Liu, Xin; Ge, Song

2012-01-01

Rice is a staple crop that has undergone substantial phenotypic and physiological changes during domestication. Here we resequenced the genomes of 40 cultivated accessions selected from the major groups of rice and 10 accessions of their wild progenitors (Oryza rufipogon and Oryza nivara) to >15 x...... diversity in cultivated but not wild rice, which represent candidate regions selected during domestication. Some of these variants are associated with important biological features, whereas others have yet to be functionally characterized. The molecular markers we have identified should be valuable...... raw data coverage. We investigated genome-wide variation patterns in rice and obtained 6.5 million high-quality single nucleotide polymorphisms (SNPs) after excluding sites with missing data in any accession. Using these population SNP data, we identified thousands of genes with significantly lower...

Submergence rice cultivation in southern Bangladesh: farmers opinion and adaptations practices

Directory of Open Access Journals (Sweden)

AKM Abdul Ahad Biswas

2015-12-01

Full Text Available Rice productivity in coastal Bangladesh is lower than the national average and total coastal area is considered to be submergence-prone and higher vulnerable in July to January cropping season. The selected study areas are Kalapara and Patuakhali Sadar Upazila that are too vulnerable to agriculture practices. Field survey was conducted during 01st June to 30th July, 2015 to investigate the impact of submergence on Aman rice cultivation (ARC, existing adopted local adaptation practices with impacts and options to address the submergence problem. Primary data was collected through Focus Group Discussion (FGD, Individual Interview and Key Informant Interview methods and secondary data was collected from different secondary sources. A well-structured pretested questionnaire schedule was developed keeping in mind the objectives and variables under this study. After cyclone SIDR and AILA devastation, the rate of traditional ARC is decreasing every year and in 2015 it was 26.51%. Recently farmers have adopted new cropping practices and strategies like modern ARC in Aman season as single crop; Boro-Aus-Aman season as triple crop and Aus-Aman season as double crop are practicing. Approximately all farmers have adopted to grow stress tolerant rice varieties (STRV; farmer’s curiosities to familiar with and to have the STRV are encouraging. Farmers were fully adopted BRRIdhan52 rice cultivation with positive perceptions of higher yield and lower production cost. Therefore it can be concluded that the intensity of adoption of adaptation and mitigation measures are significantly influenced positively by the STRV yield capability; farmer’s participation in intervention programs; livelihood diversification; frequency of extension personnel contact; submergence and inundation characteristics; tolerance attributes of STRV and availability of STRV cultivation information.International Journal of Environment Vol.4(4 2015: 100-113

Rice Varieties in Archaic East Asia: Reduction of Its Diversity from Past to Present Times.

Science.gov (United States)

Kumagai, Masahiko; Kanehara, Masaaki; Shoda, Shin'ya; Fujita, Saburo; Onuki, Shizuo; Ueda, Shintaroh; Wang, Li

2016-10-01

The Asian cultivated rice, Oryza sativa, is one of the most important crops feeding more than a third of global population. In spite of the studies for several decades, the origin and domestication history of rice varietal groups, japonica and indica, have not been fully unveiled. Genetic information of ancient rice remains is essential for direct and exclusive insight into the domestication history of rice. We performed ancient DNA analysis of 950- to 2,800-year-old rice remains excavated from Japan and Korea. We found the presence of both japonica- and indica-type varieties in the Yayoi period and the middle ages of Japan and the middle part of Korea Peninsula 2,000 years ago. It is popularly considered that japonica has been exclusively cultivated in northern part of East Asia including Japan and Korea. Our result disclosed unexpectedly wide diversity of rice varieties in archaic East Asia. The present results from ancient rice DNA reveal an exclusive insight for the domestication history of rice which is not provided as far as contemporary rice. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.

Science.gov (United States)

Bessho-Uehara, Kanako; Wang, Diane R; Furuta, Tomoyuki; Minami, Anzu; Nagai, Keisuke; Gamuyao, Rico; Asano, Kenji; Angeles-Shim, Rosalyn B; Shimizu, Yoshihiro; Ayano, Madoka; Komeda, Norio; Doi, Kazuyuki; Miura, Kotaro; Toda, Yosuke; Kinoshita, Toshinori; Okuda, Satohiro; Higashiyama, Tetsuya; Nomoto, Mika; Tada, Yasuomi; Shinohara, Hidefumi; Matsubayashi, Yoshikatsu; Greenberg, Anthony; Wu, Jianzhong; Yasui, Hideshi; Yoshimura, Atsushi; Mori, Hitoshi; McCouch, Susan R; Ashikari, Motoyuki

2016-08-09

Domestication of crops based on artificial selection has contributed numerous beneficial traits for agriculture. Wild characteristics such as red pericarp and seed shattering were lost in both Asian (Oryza sativa) and African (Oryza glaberrima) cultivated rice species as a result of human selection on common genes. Awnedness, in contrast, is a trait that has been lost in both cultivated species due to selection on different sets of genes. In a previous report, we revealed that at least three loci regulate awn development in rice; however, the molecular mechanism underlying awnlessness remains unknown. Here we isolate and characterize a previously unidentified EPIDERMAL PATTERNING FACTOR-LIKE (EPFL) family member named REGULATOR OF AWN ELONGATION 2 (RAE2) and identify one of its requisite processing enzymes, SUBTILISIN-LIKE PROTEASE 1 (SLP1). The RAE2 precursor is specifically cleaved by SLP1 in the rice spikelet, where the mature RAE2 peptide subsequently induces awn elongation. Analysis of RAE2 sequence diversity identified a highly variable GC-rich region harboring multiple independent mutations underlying protein-length variation that disrupt the function of the RAE2 protein and condition the awnless phenotype in Asian rice. Cultivated African rice, on the other hand, retained the functional RAE2 allele despite its awnless phenotype. Our findings illuminate the molecular function of RAE2 in awn development and shed light on the independent domestication histories of Asian and African cultivated rice.

Comparison of aquatic macrophyte community structure between natural wetlands and rice fields with different cultivation ages

OpenAIRE

Rolon, A. S.; Godoy, R. S.; Maltchik, L.

2017-01-01

Abstract Recent studies indicate that rice fields contribute to the conservation of aquatic plants, however, repeated cultivation can reduce the species diversity harbored by rice fields. Repeated tillage, agrochemical application and environmental homogeneity can reduce plant diversity and select for species more tolerant to disturbance. Our hypotheses were: 1) macrophyte richness and biomass decrease with increased rice crop age; and 2) macrophyte species of rice fields are a subsample of n...

Untapped Endophytic Colonization and Plant Growth-Promoting Potential of the Genus Novosphingobium to Optimize Rice Cultivation

OpenAIRE

Rangjaroen, Chakrapong; Sungthong, Rungroch; Rerkasem, Benjavan; Teaumroong, Neung; Noisangiam, Rujirek; Lumyong, Saisamorn

2017-01-01

With the aim of searching for potent diazotrophic bacteria that are free of public health concerns and optimize rice cultivation, the endophytic colonization and plant growth-promoting activities of some endophytic diazotrophic bacteria isolated from rice were evaluated. Among these bacteria, the emerging diazotrophic strains of the genus Novosphingobium effectively associated with rice plant interiors and consequently promoted the growth of rice, even with the lack of a nitrogen source. Thes...

Characterising rice-based farming systems to identify opportunities for adopting water efficient cultivation methods in Tamil Nadu, India

NARCIS (Netherlands)

Senthilkumar, K.; Bindraban, P.S.; Boer, de W.J.; Ridder, de N.; Thiyagarajan, T.M.; Giller, K.E.

2009-01-01

Efficient water use in rice cultivation is a prerequisite for sustaining food security for the rice consuming population of India. Novel rice production practices, including water-saving techniques, modifications in transplanting, spacing, weeding and nutrient management, have been developed and

Effects of screenhouse cultivation and organic materials incorporation on global warming potential in rice fields.

Science.gov (United States)

Xu, Guochun; Liu, Xin; Wang, Qiangsheng; Xiong, Ruiheng; Hang, Yuhao

2017-03-01

Global rice production will be increasingly challenged by providing healthy food for a growing population at minimal environmental cost. In this study, a 2-year field experiment was conducted to investigate the effects of a novel rice cultivation mode (screenhouse cultivation, SHC) and organic material (OM) incorporation (wheat straw and wheat straw-based biogas residue) on methane (CH 4 ) and nitrous oxide (N 2 O) emissions and rice yields. In addition, the environmental factors and soil properties were also determined. Relative to the traditional open-field cultivation (OFC), SHC decreased the CH 4 and N 2 O emissions by 6.58-18.73 and 2.51-21.35%, respectively, and the global warming potential (GWP) was reduced by 6.49-18.65%. This trend was mainly because of lower soil temperature and higher soil redox potential in SHC. Although the rice grain yield for SHC were reduced by 2.51-4.98% compared to the OFC, the CH 4 emissions and GWP per unit of grain yield (yield-scaled CH 4 emissions and GWP) under SHC were declined. Compared to use of inorganic fertilizer only (IN), combining inorganic fertilizer with wheat straw (WS) or wheat straw-based biogas residue (BR) improved rice grain yield by 2.12-4.10 and 4.68-5.89%, respectively. However, OM incorporation enhanced CH 4 emissions and GWP, leading to higher yield-scaled CH 4 emissions and GWP in WS treatment. Due to rice yield that is relatively high, there was no obvious effect of BR treatment on them. These findings suggest that apparent environmental benefit can be realized by applying SHC and fermenting straw aerobically before its incorporation.

Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice.

Science.gov (United States)

Kim, HyunJung; Jung, Janelle; Singh, Namrata; Greenberg, Anthony; Doyle, Jeff J; Tyagi, Wricha; Chung, Jong-Wook; Kimball, Jennifer; Hamilton, Ruaraidh Sackville; McCouch, Susan R

2016-12-01

Understanding population structure of the wild progenitor of Asian cultivated rice (O. sativa), the Oryza rufipogon species complex (ORSC), is of interest to plant breeders and contributes to our understanding of rice domestication. A collection of 286 diverse ORSC accessions was evaluated for nuclear variation using genotyping-by-sequencing (113,739 SNPs) and for chloroplast variation using Sanger sequencing (25 polymorphic sites). Six wild subpopulations were identified, with 25 % of accessions classified as admixed. Three of the wild groups were genetically and geographically closely related to the O. sativa subpopulations, indica, aus and japonica, and carried O. sativa introgressions; the other three wild groups were genetically divergent, had unique chloroplast haplotypes, and were located at the geographical extremes of the species range. The genetic subpopulations were significantly correlated (r 2  = 0.562) with traditional species designations, O. rufipogon (perennial) and O. nivara (annual), differentiated based on morphology and life history. A wild diversity panel of 95 purified (inbred) accessions was developed for future genetic studies. Our results suggest that the cultivated aus subpopulation is most closely related to an annual wild relative, japonica to a perennial wild relative, and indica to an admixed population of diverse annual and perennial wild ancestors. Gene flow between ORSC and O. sativa is common in regions where rice is cultivated, threatening the identity and diversity of wild ORSC populations. The three geographically isolated ORSC populations harbor variation rarely seen in cultivated rice and provide a unique window into the genetic composition of ancient rice subpopulations.

A Study on Land Suitability for Rice Cultivation in Khordha District of Odisha (India) Using Remote Sensing and GIS

Science.gov (United States)

Rath, Sudhansu S.; Panda, Jagabandhu; Annadurai, R.; Nanda, Sachikanta

2018-05-01

With the global population on the rise, it is important to address the increasing demand for food. According to FAO (Food and Agriculture Organization, United Nations), by 2050, the developing countries must double their food production to meet the growing demand. Proper land utilization can be one of the solutions for this problem. In view of this, the current study focussed on land suitability analysis for Khordha district of Odisha (India) for rice crop. This study estimated that the amount of land suitable for rice cropping was 195,731 ha against the currently cultivated land of 122,183.38 ha. Therefore, there was a possibility of more amount of land that could be available for rice cultivation in Khordha district than the currently cultivated area. In order to perform this exercise, the land use and land cover data from IRS (Indian remote sensing satellite), soil nutrient parameters like pH values and nitrogen, potassium, phosphorous and organic carbon contents were considered. In addition, the climatic parameters such as near surface temperature, rainfall and number of rainy days were taken into account. The unused land identified in Khordha district in this study might be utilized for cultivating rice crop in this region.

A Study on Land Suitability for Rice Cultivation in Khordha District of Odisha (India) Using Remote Sensing and GIS

Science.gov (United States)

Rath, Sudhansu S.; Panda, Jagabandhu; Annadurai, R.; Nanda, Sachikanta

2018-02-01

With the global population on the rise, it is important to address the increasing demand for food. According to FAO (Food and Agriculture Organization, United Nations), by 2050, the developing countries must double their food production to meet the growing demand. Proper land utilization can be one of the solutions for this problem. In view of this, the current study focussed on land suitability analysis for Khordha district of Odisha (India) for rice crop. This study estimated that the amount of land suitable for rice cropping was 195,731 ha against the currently cultivated land of 122,183.38 ha. Therefore, there was a possibility of more amount of land that could be available for rice cultivation in Khordha district than the currently cultivated area. In order to perform this exercise, the land use and land cover data from IRS (Indian remote sensing satellite), soil nutrient parameters like pH values and nitrogen, potassium, phosphorous and organic carbon contents were considered. In addition, the climatic parameters such as near surface temperature, rainfall and number of rainy days were taken into account. The unused land identified in Khordha district in this study might be utilized for cultivating rice crop in this region.

Rice improvement through radiation-induced mutation for cultivation in South Vietnam

International Nuclear Information System (INIS)

Do Khac Thinh; Hung Phi Oanh; Nguyen Thi Cuc; Nguyen Ngoc Quynh

2001-01-01

For past years, rice varieties cultivated in South Vietnam originated from domestic hybridisation or from IRRI. Rice mutation breeding has been initiated for recent years. To meet the requirement of rice production diversification in different agro-ecological areas and rice genetic resources, from 1993 Institute of Agricultural Science of South Vietnam has carried out rice improvement by induced mutation of radiation. The mutagen was gamma rays of 60 Co. The goal is to create inherited variations, which cannot be obtained from other breeding methods, specially important characters of rice varieties (high tolerance to acid sulfate soil, lodging resistance combined with early maturity), which were difficult to gain by hybridisation. With 60 Co gamma rays, doses of 10-20 krad, dose rate of 280 krad/h, dry and germinated seeds of introduced and local rice varieties (IR 64, IR 9729, IR 50404, IR 59606, Jasmine 85, Nang Huong, Tam Xoan) were irradiated. The irradiated seeds were immediately sown within 24 and 94 hrs for wet seeds and dry seeds after treatment, respectively. Population of 10,000-15,000 plants were established and evaluated by IRRI evaluation standard from M2-M7 generations. 365 lines, varieties were selected with better behaviours than original varieties as lodging resistance, earliness, potential yield, leaf characters, tolerant ability to adverse conditions etc. Some good varieties (VND95-19, VND95-20) have been approved as leading national varieties and released for large-scale production in South Vietnam. (author)

Rice improvement through radiation-induced mutation for cultivation in South Vietnam

Energy Technology Data Exchange (ETDEWEB)

Do Khac Thinh; Hung Phi Oanh; Nguyen Thi Cuc; Nguyen Ngoc Quynh [Institute of Agricultural Science of South Vietnam, Ho Chi Minh (Viet Nam)

2001-03-01

For past years, rice varieties cultivated in South Vietnam originated from domestic hybridisation or from IRRI. Rice mutation breeding has been initiated for recent years. To meet the requirement of rice production diversification in different agro-ecological areas and rice genetic resources, from 1993 Institute of Agricultural Science of South Vietnam has carried out rice improvement by induced mutation of radiation. The mutagen was gamma rays of {sup 60}Co. The goal is to create inherited variations, which cannot be obtained from other breeding methods, specially important characters of rice varieties (high tolerance to acid sulfate soil, lodging resistance combined with early maturity), which were difficult to gain by hybridisation. With {sup 60}Co gamma rays, doses of 10-20 krad, dose rate of 280 krad/h, dry and germinated seeds of introduced and local rice varieties (IR 64, IR 9729, IR 50404, IR 59606, Jasmine 85, Nang Huong, Tam Xoan) were irradiated. The irradiated seeds were immediately sown within 24 and 94 hrs for wet seeds and dry seeds after treatment, respectively. Population of 10,000-15,000 plants were established and evaluated by IRRI evaluation standard from M2-M7 generations. 365 lines, varieties were selected with better behaviours than original varieties as lodging resistance, earliness, potential yield, leaf characters, tolerant ability to adverse conditions etc. Some good varieties (VND95-19, VND95-20) have been approved as leading national varieties and released for large-scale production in South Vietnam. (author)

Changes in carbon stability and microbial activity in size fractions of micro-aggregates in a rice soil chronosequence under long term rice cultivation

Science.gov (United States)

Pan, Genxing; Liu, Yalong; Wang, Ping; Li, Lianqinfg; Cheng, Kun; Zheng, Jufeng; Zhang, Xuhui; Zheng, Jinwei; Bian, Rongjun; Ding, Yuanjun; Ma, Chong

2016-04-01

Recent studies have shown soil carbon sequestration through physical protection of relative labile carbon intra micro-aggregates with formation of large sized macro-aggregates under good management of soil and agricultural systems. While carbon stabilization had been increasingly concerned as ecosystem properties, the mechanisms underspin bioactivity of soil carbon with increased carbon stability has been still poorly understood. In this study, topsoil samples were collected from rice soils derived from salt marsh under different length of rice cultivation up to 700 years from eastern China. Particle size fractions (PSF) of soil aggregates were separated using a low energy dispersion protocol. Carbon fractions in the PSFs were analyzed either with FTIR spectroscopy. Soil microbial community of bacterial, fungal and archaeal were analyzed with molecular fingerprinting using specific gene primers. Soil respiration and carbon gain from amended maize as well as enzyme activities were measured using lab incubation protocols. While the PSFs were dominated by the fine sand (200-20μm) and silt fraction (20-2μm), the mass proportion both of sand (2000-200μm) and clay (soil aggregates (also referred to aggregate stability). Soil organic carbon was found most enriched in coarse sand fraction (40-60g/kg), followed by the clay fraction (20-24.5g/kg), but depleted in the silt fraction (~10g/kg). Phenolic and aromatic carbon as recalcitrant pool were high (33-40% of total SOC) in both coarse sand and clay fractions than in both fine sand and silt fractions (20-29% of total SOC). However, the ratio of LOC/total SOC showed a weak decreasing trend with decreasing size of the aggregate fractions. Total gene content in the size fractions followed a similar trend to that of SOC. Bacterial and archaeal gene abundance was concentrated in both sand and clay fractions but that of fungi in sand fraction, and sharply decreased with the decreasing size of aggregate fraction. Gene abundance

Water Productivity of Irrigated Rice under Transplanting, Wet Seeding and Dry Seeding Methods of Cultivation

Directory of Open Access Journals (Sweden)

Murali, NS.

1997-01-01

Full Text Available Water productivity (WP of irrigated lowland rice was determined during the 1994 dry (January to May and wet (August to December seasons on a heavy clay acid sulphate soil. Treatments consisted of three cultivation methods : transplanted rice, pregerminated seeds broadcasted on puddled soil (wet seeding and dry seeds broadcasted on unpuddled soil (dry seeding. In wet and dry seeded plots, continuous standing water condition was initiated 17 days after sowing. Total water requirement for rice production was highest in transplanted plots (755 mm in wet season and 1154 mm in dry season and was lowest in dry seeded plots (505 mm in wet season and 1040 mm in dry season. Dry seeding required no water for land preparation but transplanting and wet seeding methods required 18 - 20 % of total water requirement in dry season and 27 - 29 % in wet season. Total percolation was maximum (99 mm in wet season and 215 mm in dry season in dry seeding method and was minimum (62 mm in wet season and 94 mm in dry season in transplanting method. In dry and wet seeding methods, daily percolation gradually decreased with the age of the crop. Total seepage loss did not show any significant difference between the cultivation methods in the two seasons. Grain yield was not affected by the three cultivation methods in both seasons. Water productivity (the ratio between grain yield and total amount of water used in production was 3.5 - 4.1 kg ha-1 mm-1, 3.8 - 4.4 kg ha-1 mm-1 and 4.1 - 5.5 kg ha-1 mm-1 in transplanted, wet seeded and dry seeded rice, respectively. Labour requirement for land preparation and sowing was maximum in transplanted (219 - 226 man-hours ha-1 followed by wet (104 -112 man-hours ha-1 and dry seeded (94 - 99 man-hours ha-1 methods. However, in wet season extra labour (77 man-hours ha-1 was required for weeding after crop establishment in dry and wet seeding methods. Crop maturity was 20 days earlier in wet and dry seeding methods compared to

Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice.

Science.gov (United States)

Wei, Fu-Jin; Tsai, Yuan-Ching; Wu, Hshin-Ping; Huang, Lin-Tzu; Chen, Yu-Chi; Chen, Yi-Fang; Wu, Cheng-Chieh; Tseng, Yi-Tzu; Hsing, Yue-Ie C

2016-01-01

Rice is a facultative short-day plant, and it requires a photoperiod shorter than the critical day length to get flowering. Sensitivity to photoperiod has been suggested as a major selection target in cultivated or weedy rice. The modern rice varieties in Taiwan may be cultivated twice a year. These varieties contain loss-of-function of two important flowering-time related genes, Heading date 1 (Hd1) and Early heading date 1 (Ehd1), and are mainly from a mega variety, Taichung 65. However, the parental lines of this variety were sensitive to photoperiod, thus, how Taichung 65 loss its sensitivity is a mystery. In this study, we used accession-specific single nucleotide polymorphism analysis to reveal the gene flow that occurred between different rice accessions decades ago and demonstrate that two landraces introgressed during the breeding process, which led to the loss of photoperiod sensitivity. Both Hd1 and Ehd1 may be important during artificial selection for flowering time, especially in a subtropical region such as Taiwan. This is a good example of introgression playing important roles during rice domestication. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Experimental studies on the injurious effect of sulfur dioxide upon the rice cultivation

Energy Technology Data Exchange (ETDEWEB)

Teshima, T; Takahashi, T

1952-01-01

From experimental studies on the injurious effect of sulfur dioxide upon the cultivation of rice it was ascertained that SO2 strongly affects the pollen and the ovary. The pollen and the matured grain showed a decrease in fertility when the plant is fumigated at the flowering and boot stage.

Yield gap analysis in long-term experiments with intensive rice cultivation

International Nuclear Information System (INIS)

Laureles, E.V.; Correa, T. Jr.; Buresh, R.J.

2007-01-01

The long-term continuous cropping experiment at IRRI is cultivated with three rice crops in a year, making it the world's most intensively cropped long-term rice experiment. The availability of comprehensive rice production records, compiled weather data, and tested crop models provides a means to evaluate long-term trends in measured and potential yields and yield gaps in this rice production system. Yield trends were assessed using the highest yielding cultivar in each cropping season from 1979 to 2005. Potential yield of the highest yielding cultivar in each season was determined using three rice models (ORYZA, TERM, and CERES) run with the actual transplanting and harvest dates for the cultivar. The yield gap was determined from the difference between the simulated potential grain yield and the measured grain yield. Measured and potential yields and the yield gap varied across seasons and years. Measured yields were higher in the dry season than in the early and late wet seasons. The yield gap tended to be higher in the wet season than in the dry season. Climatic parameters, particularly solar radiation, influenced the performance of rice cultivars. The relatively larger yield gaps in the late wet season than in the dry season were associated with increased spikelet sterility. The cumulative measured yield for the three annual rice crop was near 80 percent of the annual yield potential in years with best practices for fertilizer N and crop management. The long term trends suggest that effective timing and rates of N fertilization and effective control of diseases were critical in achieving 80 percent of the annual yield potential

Microbial activity promoted with organic carbon accumulation in macroaggregates of paddy soils under long-term rice cultivation

Science.gov (United States)

Liu, Yalong; Wang, Ping; Ding, Yuanjun; Lu, Haifei; Li, Lianqing; Cheng, Kun; Zheng, Jufeng; Filley, Timothy; Zhang, Xuhui; Zheng, Jinwei; Pan, Genxing

2016-12-01

While soil organic carbon (SOC) accumulation and stabilization has been increasingly the focus of ecosystem properties, how it could be linked to soil biological activity enhancement has been poorly assessed. In this study, topsoil samples were collected from a series of rice soils shifted from salt marshes for 0, 50, 100, 300 and 700 years from a coastal area of eastern China. Soil aggregates were fractioned into different sizes of coarse sand (200-2000 µm), fine sand (20-200 µm), silt (2-20 µm) and clay (Soil properties were determined to investigate niche specialization of different soil particle fractions in response to long-term rice cultivation, including recalcitrant and labile organic carbon, microbial diversity of bacterial, archaeal and fungal communities, soil respiration and enzyme activity. The results showed that the mass proportion both of coarse-sand (2000-200 µm) and clay (clay fractions (20-25 g kg-1), but was depleted in silt fractions (˜ 10 g kg-1). The recalcitrant carbon pool was higher (33-40 % of SOC) in both coarse-sand and clay fractions than in fine-sand and silt fractions (20-29 % of SOC). However, the ratio of labile organic carbon (LOC) to SOC showed a weakly decreasing trend with decreasing size of aggregate fractions. Total soil DNA (deoxyribonucleic acid) content in the size fractions followed a similar trend to that of SOC. Despite the largely similar diversity between the fractions, 16S ribosomal gene abundance of bacteria and of archaeal were concentrated in both coarse-sand and clay fractions. Being the highest generally in coarse-sand fractions, 18S rRNA gene abundance of fungi decreased sharply but the diversity gently, with decreasing size of the aggregate fractions. The soil respiration quotient (ratio of respired CO2-C to SOC) was the highest in the silt fraction, followed by the fine-sand fraction, but the lowest in coarse-sand and clay fractions in the rice soils cultivated over 100 years, whereas the microbial

Investigating differences in light stable isotopes between Thai jasmine rice and Sungyod rice

Science.gov (United States)

Kukusamude, C.; Kongsri, S.

2017-10-01

We report the differences in light stable isotopes between two kinds of Thai rice (Thai jasmine and Sungyod rice). Thai jasmine rice and Sungyod rice were cultivated in the northeast and the south of Thailand. Light isotopes including 13C, 15N and 18O of Thai jasmine rice and Sungyod rice samples were carried out using isotope ratio mass spectrometry (IRMS). Thai jasmine rice (Khao Dawk Mali 105) was cultivated from Thung Kula Rong Hai area, whereas Sungyod rice was cultivated from Phathalung province. Hypothesis testing of difference of each isotope between Thai jasmine rice and Sungyod rice was also studied. The study was the feasibility test whether the light stable isotopes can be the variables to identify Thai jasmine rice and Sungyod rice. The result shows that there was difference in the isotope patterns of Thai jasmine rice and Sungyod rice. Our results may provide the useful information in term of stable isotope profiles of Thai rice.

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

DEFF Research Database (Denmark)

Li, Xin; Zhu, Jingde; Hu, Fengyi

2012-01-01

DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza sativa ssp. japonica, indica and their wild rela...

The relationship between Anopheles gambiae density and rice cultivation in the savannah zone and forest zone of Côte d'Ivoire.

Science.gov (United States)

Briët, Olivier J T; Dossou-Yovo, Joel; Akodo, Elena; van de Giesen, Nick; Teuscher, Thomas M

2003-05-01

In 13 villages in the savannah zone and 21 villages in the forest zone of Côte d'Ivoire, the biting density of the principal malaria vector, Anopheles gambiae, was studied as a function of rice cultivation in the inland valleys in a 2-km radius around each village. In the savannah villages, during the main season cropping period, surface water on rice-cultivated and to a lesser extent on uncultivated inland valleys seems to contribute strongly to the A. gambiae population density. For the off-season cropping period (which starts after the first light rains in the savannah zone), correlations were weaker. Breeding sites other than in inland valleys may play an important role in the savannah zone. In the forest zone, however, the A. gambiae population density was strongly correlated with the surface water availability (SWA) in the rice-cultivated inland valleys, whereas the correlation with the SWA in other (uncultivated) inland valleys was weak. The requirement of sunlit breeding sites for A. gambiae might explain this difference between zones. In the forest zone, only inland valleys cleared for rice cultivation meet this requirement, whereas all other inland valleys are covered with dense vegetation. In the savannah zone, however, most undergrowth is burnt during the dry season, which permits sunlight to reach puddles resulting from the first rains.

Determination of Cadmium and Lead levels in high consumed rice (Oryza Sativa L. cultivated in Lorestan province and its comparison with national standards

Directory of Open Access Journals (Sweden)

roshanak Hedayatifar

2011-03-01

Full Text Available Rice is the main food of people in Iran and about 2.4 billion of the world population. Although its cultivation areas are less than wheat but 85% of the total product is used by people. Consumption of rice per person is estimated 42.5 kg in Iran. So it is the second high consumed agricultural product. The aim of this study was determination amount of toxic and heavy metals in high consumed rice varites cultivated in different areas of Lorestan province. Materials and Methods: In this study 99 rice samples (Tarem and Domsiah cultivated in three areas of Lorestan( khorramabad, Dorud and Borujerd province were collected. Amount of Lead and Cadmium were analyzed by atomic absorption model BRAIC WFX 130. Data were gathered and analyzed by SPSS software and compared with national standards. Results: The results for Cd and Pb were 0.037±0.06 and 0.077±0.08 mg/kg respectively. Conclusion: Cadmium and Lead levels in rice samples caltivated in Lorestan province were less than Permissible limit, so there is no risk for human health.

The land use potential of flood-prone rice fields using floating rice system in Bojonegoro regency in East Java

Science.gov (United States)

Irianto, H.; Mujiyo; Riptanti, E. W.; Qonita, A.

2018-03-01

Bojonegoro regency occupies the largest flood-prone rice fields of about 14,198 hectares, in East Java province. Floods commonly occur due to Bengawan Solo river over-burst, particularly in rainy season. The fields are potential for cultivating rice, but floods lasting for months causing these areas to be unproductive. The objective of this article is to examine the potential land use of flood prone rice fields in Bojonegoro regency using floating rice system as an effort to maintain productivity in rainy season. The method of this study is referential study about the rice production using floating cultivation system in other regions, which are later compared with the physical condition of the fields in Bojonegoro. The results of analysis show that rice cultivation using floating system can maintain rice production in flood prone areas during rainy season. The potential production of rice is 5-6 tons/ha. However, technical problems for cultivating rice cannot be ignored since farmers are not familiar with cultivating flooded fields. This article also explains alternatives of floating rice cultivation technique, which can be implemented effectively and efficiently. Pioneer work of developing floating rice in Bojonegoro that has been done by the Team of Faculty of Agriculture of UNS, Surakarta, is expected to serve as a medium for accelerating the adoption of cultivation technology innovation to farmers.

Beneficial effect of compost utilization on reducing greenhouse gas emissions in a rice cultivation system through the overall management chain.

Science.gov (United States)

Jeong, Seung Tak; Kim, Gil Won; Hwang, Hyun Young; Kim, Pil Joo; Kim, Sang Yoon

2018-02-01

Livestock manure application can stimulate greenhouse gas (GHG) emissions, especially methane (CH 4 ) in rice paddy. The stabilized organic matter (OM) is recommended to suppress CH 4 emission without counting the additional GHG emission during the composting process. To evaluate the effect of compost utilization on the net global warming potential (GWP) of a rice cropping system, the fluxes of GHGs from composting to land application were calculated by a life cycle assessment (LCA) method. The model framework was composed of GHG fluxes from industrial activities and biogenic GHG fluxes from the composting and rice cultivation processes. Fresh manure emitted 30MgCO 2 -eq.ha -1 , 90% and 10% of which were contributed by CH 4 and nitrous oxide (N 2 O) fluxes, respectively, during rice cultivation. Compost utilization decreased net GWP by 25% over that of the fresh manure during the whole process. The composting process increased the GWP of the industrial processes by 35%, but the 60% reduction in CH 4 emissions from the rice paddy mainly influenced the reduction of GWP during the overall process. Therefore, compost application could be a good management strategy to reduce GHG emissions from rice paddy systems. Copyright © 2017 Elsevier B.V. All rights reserved.

Cultivation of different strains of king oyster mushroom (Pleurotus eryngii) on saw dust and rice straw in Bangladesh.

Science.gov (United States)

Moonmoon, Mahbuba; Uddin, Md Nazim; Ahmed, Saleh; Shelly, Nasrat Jahan; Khan, Md Asaduzzaman

2010-10-01

Pleurotus eryngii is a popular mushroom due to its excellent consistency of cap and stem, culinary qualities and longer shelf life. In Bangladesh, where Pleurotus mushrooms are very popular, P. eryngii may take position among the consumers, but currently this mushroom is not cultivated in large scale there. In this study, 3 strains of P. eryngii such as Pe-1 (native to Bangladesh), Pe-2 (germplasm collected from China) and Pe-3 (germplasm collected from Japan) were cultivated on saw dust and rice straw and their growth and yield parameters were investigated. Pe-1 on saw dust showed the highest biological yield and efficiency (73.5%) than other strains. Also, the mycelium run rate and number of fruiting bodies were higher in Pe-1 than other two strains. The quality of mushroom strains was near about similar. On saw dust, the yield and efficiency were better than those cultivated on rice straw, however, on straw; the mushroom fruiting bodies were larger in size. This study shows the prospects of P. eryngii cultivation in Bangladesh and suggests further study in controlled environment for higher yield and production.

An economic evaluation comparison of solar water pumping system with engine pumping system for rice cultivation

Science.gov (United States)

Treephak, Kasem; Thongpron, Jutturit; Somsak, Dhirasak; Saelao, Jeerawan; Patcharaprakiti, Nopporn

2015-08-01

In this paper we propose the design and economic evaluation of the water pumping systems for rice cultivation using solar energy, gasoline fuel and compare both systems. The design of the water and gasoline engine pumping system were evaluated. The gasoline fuel cost used in rice cultivation in an area of 1.6 acres. Under same conditions of water pumping system is replaced by the photovoltaic system which is composed of a solar panel, a converter and an electric motor pump which is compose of a direct current (DC) motor or an alternating current (AC) motor with an inverter. In addition, the battery is installed to increase the efficiency and productivity of rice cultivation. In order to verify, the simulation and economic evaluation of the storage energy battery system with batteries and without batteries are carried out. Finally the cost of four solar pumping systems was evaluated and compared with that of the gasoline pump. The results showed that the solar pumping system can be used to replace the gasoline water pumping system and DC solar pump has a payback less than 10 years. The systems that can payback the fastest is the DC solar pumping system without batteries storage system. The system the can payback the slowest is AC solar pumping system with batteries storage system. However, VAC motor pump of 220 V can be more easily maintained than the motor pump of 24 VDC and batteries back up system can supply a more stable power to the pump system.

Concentration of radiocesium in rice, vegetables, and fruits cultivated in the evacuation area in Okuma Town, Fukushima

International Nuclear Information System (INIS)

Kenji Ohse; Kyo Kitayama; Akira Kanno; Chika Suzuki; Kencho Kawatsu; Hirofumi Tsukada

2015-01-01

Radiocesium concentration in the crops cultivated in contaminated and decontaminated soils in the evacuation area were measured. The radiocesium concentration in the decontaminated soil decreased approximately one-quarter to that in the contaminated soil. The radiocesium concentration in the rice and vegetables cultivated in the decontaminated soil decreased to one-half to tenth of that in the contaminated soil. Except for eggplant and pumpkin cultivated in the decontaminated field, the radiocesium concentration in crops was higher than the standard limit in foods in Japan. The obtained transfer factors of most crops were within the reported values. (author)

Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population

Science.gov (United States)

Oryza nivara, the progenitor of cultivated rice, O. sativa, has been the source of novel alleles for resistance to biotic and abiotic stresses, as well as for yield improvement. Many of these alleles were lost during the domestication process. To determine the molecular changes that occurred during ...

Long-term rice cultivation stabilizes soil organic carbon and promotes soil microbial activity in a salt marsh derived soil chronosequence

Science.gov (United States)

Wang, Ping; Liu, Yalong; Li, Lianqing; Cheng, Kun; Zheng, Jufeng; Zhang, Xuhui; Zheng, Jinwei; Joseph, Stephen; Pan, Genxing

2015-01-01

Soil organic carbon (SOC) sequestration with enhanced stable carbon storage has been widely accepted as a very important ecosystem property. Yet, the link between carbon stability and bio-activity for ecosystem functioning with OC accumulation in field soils has not been characterized. We assessed the changes in microbial activity versus carbon stability along a paddy soil chronosequence shifting from salt marsh in East China. We used mean weight diameter, normalized enzyme activity (NEA) and carbon gain from straw amendment for addressing soil aggregation, microbial biochemical activity and potential C sequestration, respectively. In addition, a response ratio was employed to infer the changes in all analyzed parameters with prolonged rice cultivation. While stable carbon pools varied with total SOC accumulation, soil respiration and both bacterial and fungal diversity were relatively constant in the rice soils. Bacterial abundance and NEA were positively but highly correlated to total SOC accumulation, indicating an enhanced bio-activity with carbon stabilization. This could be linked to an enhancement of particulate organic carbon pool due to physical protection with enhanced soil aggregation in the rice soils under long-term rice cultivation. However, the mechanism underpinning these changes should be explored in future studies in rice soils where dynamic redox conditions exist. PMID:26503629

Basic approaches for the handling of illnesses of the cultivation of the rice

International Nuclear Information System (INIS)

Tapiero Ortiz, A.L.

2001-01-01

Some basic concepts are exposed for the handling of illnesses in the cultivation of the rice, beginning with the illness definition in the plants, integrating the concept in a system plant-pathogen-environment that in turn would have the subsystem it plants, subsystem pathogen and subsystem environmental conditions. It discusses each one of these subsystems and their influence in the development of the infection. The illnesses of the rice are described taken place by the mushrooms Pyricularia oryzae and Rizoctonia solani and the resistance and receptivity to the pathogens on the part of genetic materials, as well as it influences of the environment and indications are given for their handling. The spotted of the grain of the rice like an illness is described caused by a complex of mushrooms, bacteria and nutritional and climatic factors that cause decrease in the yield and they reduce the quality of the grain and the seed. They are related the pathogens organisms causing the illness, the influence of the environment in their development and instructions are given for their handling

Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication.

Science.gov (United States)

Zhang, Fantao; Xu, Tao; Mao, Linyong; Yan, Shuangyong; Chen, Xiwen; Wu, Zhenfeng; Chen, Rui; Luo, Xiangdong; Xie, Jiankun; Gao, Shan

2016-04-26

It is widely accepted that cultivated rice (Oryza sativa L.) was domesticated from common wild rice (Oryza rufipogon Griff.). Compared to other studies which concentrate on rice origin, this study is to genetically elucidate the substantially phenotypic and physiological changes from wild rice to cultivated rice at the whole genome level. Instead of comparing two assembled genomes, this study directly compared the Dongxiang wild rice (DXWR) Illumina sequencing reads with the Nipponbare (O. sativa) complete genome without assembly of the DXWR genome. Based on the results from the comparative genomics analysis, structural variations (SVs) between DXWR and Nipponbare were determined to locate deleted genes which could have been acquired by Nipponbare during rice domestication. To overcome the limit of the SV detection, the DXWR transcriptome was also sequenced and compared with the Nipponbare transcriptome to discover the genes which could have been lost in DXWR during domestication. Both 1591 Nipponbare-acquired genes and 206 DXWR-lost transcripts were further analyzed using annotations from multiple sources. The NGS data are available in the NCBI SRA database with ID SRP070627. These results help better understanding the domestication from wild rice to cultivated rice at the whole genome level and provide a genomic data resource for rice genetic research or breeding. One finding confirmed transposable elements contribute greatly to the genome evolution from wild rice to cultivated rice. Another finding suggested the photophosphorylation and oxidative phosphorylation system in cultivated rice could have adapted to environmental changes simultaneously during domestication.

The Interactive Effect of Diversification and Farming Scale on Productivity of Family Farm:Taking Rice Cultivation as An Example

Science.gov (United States)

Wei, Zhou

2017-05-01

Based on the diversification and cultivation scale, the rice cropping data of rural fixed observation points in 2011 were selected and the effect of diversification degree on rice productivity was analyzed by the Tobit model. The empirical results of the model show that diversification of sample farm will lead to loss of rice production efficiency. With the increase of rice planting scale, the loss of rice production efficiency will need to be further increased by diversification. Thus, we should stick to the family farm of specialized production operation. The transfer of land, the price and quantity of leasing, respecting the law of the market; the raising of funds can be considered non-subsidized capital market financing to help, while maintaining a certain degree of diversification, to avoid idle assets, low resource efficiency loss.

Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome.

Science.gov (United States)

Krishnan S, Gopala; Waters, Daniel L E; Henry, Robert J

2014-01-01

Rice is a major source of human food with a predominantly Asian production base. Domestication involved selection of traits that are desirable for agriculture and to human consumers. Wild relatives of crop plants are a source of useful variation which is of immense value for crop improvement. Australian wild rices have been isolated from the impacts of domestication in Asia and represents a source of novel diversity for global rice improvement. Oryza rufipogon is a perennial wild progenitor of cultivated rice. Oryza meridionalis is a related annual species in Australia. We have examined the sequence of the genomes of AA genome wild rices from Australia that are close relatives of cultivated rice through whole genome re-sequencing. Assembly of the resequencing data to the O. sativa ssp. japonica cv. Nipponbare shows that Australian wild rices possess 2.5 times more single nucleotide polymorphisms than in the Asian wild rice and cultivated O. sativa ssp. indica. Analysis of the genome of domesticated rice reveals regions of low diversity that show very little variation (polymorphism deserts). Both the perennial and annual wild rice from Australia show a high degree of conservation of sequence with that found in cultivated rice in the same 4.58 Mbp region on chromosome 5, which suggests that some of the 'polymorphism deserts' in this and other parts of the rice genome may have originated prior to domestication due to natural selection. Analysis of genes in the 'polymorphism deserts' indicates that this selection may have been due to biotic or abiotic stress in the environment of early rice relatives. Despite having closely related sequences in these genome regions, the Australian wild populations represent an invaluable source of diversity supporting rice food security.

Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome.

Directory of Open Access Journals (Sweden)

Gopala Krishnan S

Full Text Available BACKGROUND: Rice is a major source of human food with a predominantly Asian production base. Domestication involved selection of traits that are desirable for agriculture and to human consumers. Wild relatives of crop plants are a source of useful variation which is of immense value for crop improvement. Australian wild rices have been isolated from the impacts of domestication in Asia and represents a source of novel diversity for global rice improvement. Oryza rufipogon is a perennial wild progenitor of cultivated rice. Oryza meridionalis is a related annual species in Australia. RESULTS: We have examined the sequence of the genomes of AA genome wild rices from Australia that are close relatives of cultivated rice through whole genome re-sequencing. Assembly of the resequencing data to the O. sativa ssp. japonica cv. Nipponbare shows that Australian wild rices possess 2.5 times more single nucleotide polymorphisms than in the Asian wild rice and cultivated O. sativa ssp. indica. Analysis of the genome of domesticated rice reveals regions of low diversity that show very little variation (polymorphism deserts. Both the perennial and annual wild rice from Australia show a high degree of conservation of sequence with that found in cultivated rice in the same 4.58 Mbp region on chromosome 5, which suggests that some of the 'polymorphism deserts' in this and other parts of the rice genome may have originated prior to domestication due to natural selection. CONCLUSIONS: Analysis of genes in the 'polymorphism deserts' indicates that this selection may have been due to biotic or abiotic stress in the environment of early rice relatives. Despite having closely related sequences in these genome regions, the Australian wild populations represent an invaluable source of diversity supporting rice food security.

Rice cultivation in the farming systems of Sukumaland, Tanzania : a quest for sustainable production under structural adjustment programmes

NARCIS (Netherlands)

Meertens, H.C.C.

1999-01-01

This thesis investigates options for sustainable rice cultivation and general agricultural development in the Mwanza and Shinyanga regions in northwestern Tanzania, often called Sukumaland due to the predominance of Wasukuma people. Generally Sukumaland has a semi-arid climate; agriculture

The impact of Rhizopus oryzae cultivation on rice bran: Gamma-oryzanol recovery and its antioxidant properties.

Science.gov (United States)

Massarolo, Kelly Cristina; Denardi de Souza, Taiana; Collazzo, Carolina Carvalho; Badiale Furlong, Eliana; Souza Soares, Leonor Almeida de

2017-08-01

This study evaluated the effect of the solid state cultivation (SSC) time of rice bran by Rhizopus oryzae on γ-oryzanol recovery and its antioxidant properties. Gamma-oryzanol was extracted with organic solvents and its extracts were characterized by GC-FID and HPLC-UV. The antioxidant capacity was assessed by DPPH and ABTS + assays, β-carotene/linoleic acid system, and reduction of oxidation in lipid system. The biomass showed the γ-oryzanol recovery increased by 51.5% (20.52mg/g), and 5.7% in polyunsaturated fatty acids. The γ-oryzanol major components changing in their profile. The γ-oryzanol extract from biomass (72h) showed the greatest DPPH inhibition (59.0%), while 90.5% inhibition of oxidation of β-carotene/linoleic acid system, and 30% reduction of the indicators of oxidation in olive oil was observed in the one cultivated at 96h, these behaviors were confirmed by PCA analyses. SSC provides an increase in the γ-oryzanol recovery followed by improving of the functional properties of rice bran. Copyright © 2017 Elsevier Ltd. All rights reserved.

Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication.

Science.gov (United States)

Wang, Yu; Bai, Xuefei; Yan, Chenghai; Gui, Yiejie; Wei, Xinghua; Zhu, Qian-Hao; Guo, Longbiao; Fan, Longjiang

2012-11-01

The lack of a MIRNA set and genome sequence of wild rice (Oryza rufipogon) has prevented us from determining the role of MIRNA genes in rice domestication. In this study, a genome, three small RNA populations and a degradome of O. rufipogon were sequenced by Illumina platform and the expression levels of microRNAs (miRNAs) were investigated by miRNA chips. A de novo O. rufipogon genome was assembled using c. 55× coverage of raw sequencing data and a total of 387 MIRNAs were identified in the O. rufipogon genome based on c. 5.2 million unique small RNA reads from three different tissues of O. rufipogon. Of these, O. rufipogon MIRNAs, 259 were not found in the cultivated rice, suggesting a loss of these MIRNAs in the cultivated rice. We also found that 48 MIRNAs were novel in the cultivated rice, suggesting that they were potential targets of domestication selection. Some miRNAs showed significant expression differences between wild and cultivated rice, suggesting that expression of miRNA could also be a target of domestication, as demonstrated for the miR164 family. Our results illustrated that MIRNA genes, like protein-coding genes, might have been significantly shaped during rice domestication and could be one of the driving forces that contributed to rice domestication. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

KAJIAN INPUT ENERGI PADA BUDIDAYA PADI METODE SYSTEM OF RICE INTENSIFICATION Studies on Energy Input in System of Rice Intensification Method of Rice Cultivation

Directory of Open Access Journals (Sweden)

Bambang Purwantana

2012-05-01

Full Text Available System of Rice Intensification (SRI is a rice cultivation method that intensively control and manage macro and micro nutrients as well as irrigation. This paper quantifies and compares the energy uses of SRI and conventional rice cultiva- tion systems. The study was conducted at some SRI’s experimental plots in the districts of Sleman, Kulonprogo, and Bantul, the province of Yogyakarta. The calculation of the energy was based on the farmers’ work schedule, the time required for each operation, the number of laborers, machines, tools, fuel, and all materials and inputs used. The result shows that SRI method consumed 35% less energy to conventional rice cultivation. Energy inputs from seed, water, fertilizer and pesticide were significantly reduces. However, there was higher input of human energy due to compost- ing, land preparation and weeding operations. The specific energy of SRI method was 1.96 MJ ha-1 lower than conven- tional method of 4.43 MJ ha-1. In the SRI method, 56.2 % of energy consumed was classified as direct energy and 43.8% was indirect energy. The SRI method used 61.9 % of renewable energy and 38.1 % of non-renewable energy. The working efficiency in composting and weeding operations should be improved in perspective of machine and tools to reduce the use of human energy. ABSTRAK System of Rice Intensification (SRI, merupakan suatu metode budidaya padi secara intensif dengan pengendalian unsur-unsur hara makro dan mikro disertai pengendalian dan pengaturan kebutuhan air. Penelitian ini bertujuan untuk menganalisis penggunaan energi dan mengidentifikasi kemungkinan penghematan energi pada budidaya padi SRI. Pe- nelitian dilakukan di Kabupaten Sleman, Kulonprogo, dan Bantul, Propinsi Daerah Istimewa Yogyakarta. Pengamatan dilakukan pada plot-plot percobaan budidaya padi SRI dengan melakukan audit seluruh input energi selama proses budidaya dan dikomparasikan dengan input energi pada budidaya padi cara konvensional. Hasil

Health assessment of Arsenic and Zinc in rice cultivated in Fars province (Case Study: Firoozabad fields

Directory of Open Access Journals (Sweden)

M Cheraghi

2013-11-01

Full Text Available Food security along with the protection of environment has become a global issue.Accumulation of Arsenic and Zinc in rice is considered as a major problem for South-East Asia, where rice is a staple food. Given that, rice is considered as the highly consumed food in the diet of Iranian people, this study was conducted to estimate the concentrations of Zinc and Arsenic in rice cultivated in Firoozabad fields. For this purpose, 38 rice samples were collected from 22 nearby villages. Samples were digested by Digesdahl device and the concentrations of Arsenic and Zinc were determined by ICP. The results showed that the concentration (mean ± SD of Zinc was 20.87 ± 1.9 mg/kg of dry matter (ranged from 25.26 to 32.97; meanwhile mean value of Arsenic concentration was estimated at 22.89 ± 2.2 mg/kg of dry matter (ranged from 17.61 to 26.77.Comparing the concentrations of Arsenic and Zinc in rice samples with the standard limit set by WHO/FAO it was revealed that Arsenic concentrations in 100% of the samples were higher than standard level, whereas Zinc concentrations in 97.36% of the samples were below the limit.

Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation

Science.gov (United States)

Jin, Xin; Chen, Yu; Liu, Ping; Li, Chen; Cai, Xingxing; Rong, Jun

2018-01-01

Abstract Maintaining genetic integrity is essential for in situ and ex situ conservation of crop wild relative (CWR) species. However, introgression of crop alleles into CWR species/populations may change their genetic structure and diversity, resulting in more invasive weeds or, in contrast, the extinction of endangered populations. To determine crop-wild introgression and its consequences, we examined the genetic structure and diversity of six wild rice (Oryza rufipogon) populations under in situ conservation in China. Thirty-four simple sequence repeat (SSR) and 34 insertion/deletion markers were used to genotype the wild rice populations and two sets of rice cultivars (O. sativa), corresponding to the two types of molecular markers. Shared alleles and STRUCTURE analyses suggested a variable level of crop-wild introgression and admixture. Principal coordinates and cluster analyses indicated differentiation of wild rice populations, which was associated with the spatial distances to cultivated rice fields. The level of overall genetic diversity was comparable between wild rice populations and rice cultivars, but a great number of wild-specific alleles was detected in the wild populations. We conclude based on the results that crop-wild introgression can considerably alter the pattern of genetic structure and relationships of CWR populations. Appropriate measures should be taken for effective in situ conservation of CWR species under the scenario of crop-wild introgression. PMID:29308123

The carbon count of 2000 years of rice cultivation.

Science.gov (United States)

Kalbitz, Karsten; Kaiser, Klaus; Fiedler, Sabine; Kölbl, Angelika; Amelung, Wulf; Bräuer, Tino; Cao, Zhihong; Don, Axel; Grootes, Piet; Jahn, Reinhold; Schwark, Lorenz; Vogelsang, Vanessa; Wissing, Livia; Kögel-Knabner, Ingrid

2013-04-01

More than 50% of the world's population feeds on rice. Soils used for rice production are mostly managed under submerged conditions (paddy soils). This management, which favors carbon sequestration, potentially decouples surface from subsurface carbon cycling. The objective of this study was to elucidate the long-term rates of carbon accrual in surface and subsurface soil horizons relative to those of soils under nonpaddy management. We assessed changes in total soil organic as well as of inorganic carbon stocks along a 2000-year chronosequence of soils under paddy and adjacent nonpaddy management in the Yangtze delta, China. The initial organic carbon accumulation phase lasts much longer and is more intensive than previously assumed, e.g., by the Intergovernmental Panel on Climate Change (IPCC). Paddy topsoils accumulated 170-178 kg organic carbon ha(-1) a(-1) in the first 300 years; subsoils lost 29-84 kg organic carbon ha(-1) a(-1) during this period of time. Subsoil carbon losses were largest during the first 50 years after land embankment and again large beyond 700 years of cultivation, due to inorganic carbonate weathering and the lack of organic carbon replenishment. Carbon losses in subsoils may therefore offset soil carbon gains or losses in the surface soils. We strongly recommend including subsoils into global carbon accounting schemes, particularly for paddy fields. © 2012 Blackwell Publishing Ltd.

Enhancing the fertility of an acid sulfate soil for rice cultivation using lime in combination with bio-organic fertilizer

International Nuclear Information System (INIS)

Farhana, A.; Shamshuddin, J.; Fauziah, C.I.; Panhwar, Q.A.

2017-01-01

The acid sulfate soils contain pyrite (FeS/sub 2/) which is due to oxidation results in the production of high amount of acidity, aluminum and iron significantly affecting rice growth. A glasshouse study was arranged to determine the effect of ground magnesium limestone (GML) in combination with bio-organic fertilizer (JITUTM) application on the chemical properties of soils and rice yield. Three rice seedlings were transplanted in pots which were previously amended with 0, 2, 4, 6 and 8 t/ha GML with or without bio-organic fertilizer. The common rice varieties (MR 219 and MR 253) were cultivated for two seasons in the same pots. The critical Fe2+ and Al3+ activities for MR 219 were 14.45 and 4.23 mu M, while for MR 253 were 7.45 and 5.53 mu M, respectively. However, without applying the amendments, rice grown on the soils was affected severely by the high acidity (Fe2+ and Al3+ toxicity). The soil pH increased to 5 and the higher grain yield of MR 219 (99.77 and 121.38 g/pot) and MR253 (98.63 and 112.60 g/pot) was in first and second season with the application of 2 t GML application combined with 0.25 t JITUTM/ha respectively. In addition, 1000 grain weight, number of panicle, number of spikelets panicle-1 and the percentage of filled spikelet, were also higher than without the soil amendments. Hence, the infertility of acid sulfate soils for sustainable rice cultivation in Malaysia can be improved by applying 2 t GML/ha combined with 0.25 t JITUTM/ha for two seasons in long run. (author)

Genetic Diversity of Wild Rice Species in Yunnan Province of China

OpenAIRE

Zai-quan CHENG; Fu-you YING; Ding-qing LI; Teng-qiong YU; Jian FU; Hui-jun YAN; Qiao-fang ZHONG; Dun-yu ZHANG; Wei-jiao LI; Xing-qi HUANG

2012-01-01

Yunnan Province of China is one of the important centers for origin and evolution of cultivated rice worldwide. Wild rice is the ancestor of the cultivated rice. Many elite traits of wild rice have widened the genetic basis in cultivated rice. However, many populations of wild rice species have disappeared in the past few years. Therefore, the current status of wild rice resources should be updated and the genetic diversity of wild rice species should be examined for further germplasm preserv...

Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA.

Directory of Open Access Journals (Sweden)

Seonghee Lee

Full Text Available The Pi-ta gene in rice has been effectively used to control rice blast disease caused by Magnaporthe oryzae worldwide. Despite a number of studies that reported the Pi-ta gene in domesticated rice and wild species, little is known about how the Pi-ta gene has evolved in US weedy rice, a major weed of rice. To investigate the genome organization of the Pi-ta gene in weedy rice and its relationship to gene flow between cultivated and weedy rice in the US, we analyzed nucleotide sequence variation at the Pi-ta gene and its surrounding 2 Mb region in 156 weedy, domesticated and wild rice relatives. We found that the region at and around the Pi-ta gene shows very low genetic diversity in US weedy rice. The patterns of molecular diversity in weeds are more similar to cultivated rice (indica and aus, which have never been cultivated in the US, rather than the wild rice species, Oryza rufipogon. In addition, the resistant Pi-ta allele (Pi-ta found in the majority of US weedy rice belongs to the weedy group strawhull awnless (SH, suggesting a single source of origin for Pi-ta. Weeds with Pi-ta were resistant to two M. oryzae races, IC17 and IB49, except for three accessions, suggesting that component(s required for the Pi-ta mediated resistance may be missing in these accessions. Signatures of flanking sequences of the Pi-ta gene and SSR markers on chromosome 12 suggest that the susceptible pi-ta allele (pi-ta, not Pi-ta, has been introgressed from cultivated to weedy rice by out-crossing.

Molecular Evolution of the Rice Blast Resistance Gene Pi-ta in Invasive Weedy Rice in the USA

Science.gov (United States)

Lee, Seonghee; Jia, Yulin; Jia, Melissa; Gealy, David R.; Olsen, Kenneth M.; Caicedo, Ana L.

2011-01-01

The Pi-ta gene in rice has been effectively used to control rice blast disease caused by Magnaporthe oryzae worldwide. Despite a number of studies that reported the Pi-ta gene in domesticated rice and wild species, little is known about how the Pi-ta gene has evolved in US weedy rice, a major weed of rice. To investigate the genome organization of the Pi-ta gene in weedy rice and its relationship to gene flow between cultivated and weedy rice in the US, we analyzed nucleotide sequence variation at the Pi-ta gene and its surrounding 2 Mb region in 156 weedy, domesticated and wild rice relatives. We found that the region at and around the Pi-ta gene shows very low genetic diversity in US weedy rice. The patterns of molecular diversity in weeds are more similar to cultivated rice (indica and aus), which have never been cultivated in the US, rather than the wild rice species, Oryza rufipogon. In addition, the resistant Pi-ta allele (Pi-ta) found in the majority of US weedy rice belongs to the weedy group strawhull awnless (SH), suggesting a single source of origin for Pi-ta. Weeds with Pi-ta were resistant to two M. oryzae races, IC17 and IB49, except for three accessions, suggesting that component(s) required for the Pi-ta mediated resistance may be missing in these accessions. Signatures of flanking sequences of the Pi-ta gene and SSR markers on chromosome 12 suggest that the susceptible pi-ta allele (pi-ta), not Pi-ta, has been introgressed from cultivated to weedy rice by out-crossing. PMID:22043312

Formation of Guaiacol by Spoilage Bacteria from Vanillic Acid, a Product of Rice Koji Cultivation, in Japanese Sake Brewing.

Science.gov (United States)

Ito, Toshihiko; Konno, Mahito; Shimura, Yoichiro; Watanabe, Seiei; Takahashi, Hitoshi; Hashizume, Katsumi

2016-06-08

The formation of guaiacol, a potent phenolic off-odor compound in the Japanese sake brewing process, was investigated. Eight rice koji samples were analyzed, and one contained guaiacol and 4-vinylguaiacol (4-VG) at extraordinarily high levels: 374 and 2433 μg/kg dry mass koji, respectively. All samples contained ferulic and vanillic acids at concentrations of mg/kg dry mass koji. Guaiacol forming microorganisms were isolated from four rice koji samples. They were identified as Bacillus subtilis, B. amyloliquefaciens/subtilis, and Staphylococcus gallinarum using 16S rRNA gene sequence. These spoilage bacteria convert vanillic acid to guaiacol and ferulic acid to 4-VG. However, they convert very little ferulic acid or 4-VG to guaiacol. Nine strains of koji fungi tested produced vanillic acid at the mg/kg dry mass koji level after cultivation. These results indicated that spoilage bacteria form guaiacol from vanillic acid, which is a product of koji cultivation in the sake brewing process.

Molecular evolution of shattering loci in U.S. weedy rice.

Science.gov (United States)

Thurber, Carrie S; Reagon, Michael; Gross, Briana L; Olsen, Kenneth M; Jia, Yulin; Caicedo, Ana L

2010-08-01

Cultivated rice fields worldwide are plagued with weedy rice, a conspecific weed of cultivated rice (Oryza sativa L.). The persistence of weedy rice has been attributed, in part, to its ability to shatter (disperse) seed prior to crop harvesting. In the United States, separately evolved weedy rice groups have been shown to share genomic identity with exotic domesticated cultivars. Here, we investigate the shattering phenotype in a collection of U.S. weedy rice accessions, as well as wild and cultivated relatives. We find that all U.S. weedy rice groups shatter seeds easily, despite multiple origins, and in contrast to a decrease in shattering ability seen in cultivated groups. We assessed allelic identity and diversity at the major shattering locus, sh4, in weedy rice; we find that all cultivated and weedy rice, regardless of population, share similar haplotypes at sh4, and all contain a single derived mutation associated with decreased seed shattering. Our data constitute the strongest evidence to date of an evolution of weeds from domesticated backgrounds. The combination of a shared cultivar sh4 allele and a highly shattering phenotype, suggests that U.S. weedy rice have re-acquired the shattering trait after divergence from their progenitors through alternative genetic mechanisms.

Physiological and molecular characterization of Si uptake in wild rice species.

Science.gov (United States)

Mitani-Ueno, Namiki; Ogai, Hisao; Yamaji, Naoki; Ma, Jian Feng

2014-07-01

Cultivated rice (Oryza sativa) accumulates high concentration of silicon (Si), which is required for its high and sustainable production. High Si accumulation in cultivated rice is achieved by a high expression of both influx (Lsi1) and efflux (Lsi2) Si transporters in roots. Herein, we physiologically investigated Si uptake, isolated and functionally characterized Si transporters in six wild rice species with different genome types. Si uptake by the roots was lower in Oryza rufipogon, Oryza barthii (AA genome), Oryza australiensis (EE genome) and Oryza punctata (BB genome), but similar in Oryza glumaepatula and Oryza meridionalis (AA genome) compared with the cultivated rice (cv. Nipponbare). However, all wild rice species and the cultivated rice showed similar concentration of Si in the shoots when grown in a field. All species with AA genome showed the same amino acid sequence of both Lsi1 and Lsi2 as O. sativa, whereas species with EE and BB genome showed several nucleotide differences in both Lsi1 and Lsi2. However, proteins encoded by these genes also showed transport activity for Si in Xenopus oocyte. The mRNA expression of Lsi1 in all wild rice species was lower than that in the cultivated rice, whereas the expression of Lsi2 was lower in O. rufipogon and O. barthii but similar in other species. Similar cellular localization of Lsi1 and Lsi2 was observed in all wild rice as the cultivated rice. These results indicate that superior Si uptake, the important trait for rice growth, is basically conserved in wild and cultivated rice species. © 2013 Scandinavian Plant Physiology Society.

Modelagem da emissão de folhas em arroz cultivado e em arroz-vermelho Modeling leaf appearance in cultivated rice and red rice

Directory of Open Access Journals (Sweden)

Nereu Augusto Streck

2008-05-01

Full Text Available O objetivo deste trabalho foi simular o aparecimento de folhas em genótipos de arroz cultivados e em biótipos de arroz-vermelho por meio da adaptação do modelo de Wang e Engel, modificado por Streck et al. Dois experimentos foram conduzidos em Santa Maria, RS, em 2004/2005 e 2005/2006. Foram utilizadas as cultivares IRGA 417 e EEA 406, um híbrido e dois biótipos de arroz-vermelho. O modelo de aparecimento de folhas foi ajustado para os genótipos usando-se dados de estágio de Haun (HS, de cinco épocas de semeadura, em 2004/2005, e a avaliação do modelo foi feita com dados de HS medidos em três épocas de semeadura, em 2005/2006. Realizou-se também um experimento numérico utilizando-se dados de temperatura de 2003/2004 e de 2006/2007, e comparou-se o HS simulado dos genótipos cultivados em relação aos biótipos de arroz-vermelho. O modelo apresentou bom desempenho para simular o HS com raiz do quadrado médio do erro geralmente menor do que uma folha. A emissão de folhas na haste principal foi maior nos genótipos modernos - IRGA 417 e híbrido - do que no genótipo tradicional EEA 406. A emissão de folhas é diferente em distintos biótipos de arroz-vermelho.The objective of this work was to simulate leaf appearance in cultivated rice genotypes and in red rice biotypes, by adapting the Wang and Engel model modified by Streck et al. Two experiments were conducted in Santa Maria, Rio Grande do Sul State, Brazil, during 2004/2005 and 2005/2006 growing seasons. Cultivars IRGA 417 and EEA 406, one hybrid, and two red rice biotypes were used. The leaf appearance model was adjusted, using Haun Stage (HS data from five sowing dates of 2004/2005 growing season, and the model evaluation was performed using HS data from three sowing dates of 2005/2006 growing season. A numerical experiment was also carried out using temperature data occurred during 2003/2004 and 2006/2007 growing seasons, and simulated HS of the cultivated rice genotypes

Influence of Crop Nutrition on Grain Yield, Seed Quality and Water Productivity under Two Rice Cultivation Systems

Directory of Open Access Journals (Sweden)

Y.V. SINGH

2013-03-01

Full Text Available The system of rice intensification (SRI is reported to have advantages like lower seed requirement, less pest attack, shorter crop duration, higher water use efficiency and the ability to withstand higher degree of moisture stress than traditional method of rice cultivation. With this background, SRI was compared with traditional transplanting technique at Indian Agricultural Research Institute, New Delhi, India during two wet seasons (2009–2011. In the experiment laid out in a factorial randomized block design, two methods of rice cultivation [conventional transplanting (CT and SRI] and two rice varieties (Pusa Basmati 1 and Pusa 44 were used under seven crop nutrition treatments, viz. T1, 120 kg/hm2 N, 26.2 kg/hm2 P and 33 kg/hm2 K; T2, 20 t/hm2 farmyard manure (FYM; T3, 10 t/hm2 FYM + 60 kg/hm2 N; T4, 5 t/hm2 FYM + 90 kg/hm2 N; T5, 5 t/hm2 FYM + 60 kg/hm2 N + 1.5 kg/hm2 blue green algae (BGA; T6, 5 t/hm2 FYM + 60 kg/hm2 N + 1.0 t/hm2 Azolla, and T7, N0P0K0 (control, no NPK application to study the effect on seed quality, yield and water use. In SRI, soil was kept at saturated moisture condition throughout vegetative phase and thin layer of water (2–3 cm was maintained during the reproductive phase of rice, however, in CT, standing water was maintained in crop growing season. Results revealed that CT and SRI gave statistically at par grain yield but straw yield was significantly higher in CT as compared to SRI. Seed quality was superior in SRI as compared to CT. Integrated nutrient management (INM resulted in higher plant height with longer leaves than chemical fertilizer alone in both the rice varieties. Grain yield attributes such as number of effective tillers per hill, panicle length and panicle weight of rice in both the varieties were significantly higher in INM as compared to chemical fertilizer alone. Grain yields of both the varieties were the highest in INM followed by the recommended doses of chemical fertilizer. The grain yield

African rice (Oryza glaberrima) cultivation in the Togo Hills: ecological and socio-cultural cues in farmer seed selection and development

NARCIS (Netherlands)

Teeken, B.W.E.

2015-01-01

Abstract

Teeken B (2015). African rice (Oryza glaberrima) cultivation in the Togo Hills: ecological and socio-cultural cues in farmer seed selection and development. PhD thesis, Wageningen University, The Netherlands, 306 pp. The low adoption rates of

Water management practices affect arsenic and cadmium accumulation in rice grains.

Science.gov (United States)

Sun, Liming; Zheng, Manman; Liu, Hongyan; Peng, Shaobing; Huang, Jianliang; Cui, Kehui; Nie, Lixiao

2014-01-01

Cadmium (Cd) and arsenic (As) accumulation in rice grains is a great threat to its productivity, grain quality, and thus human health. Pot and field studies were carried out to unravel the effect of different water management practices (aerobic, aerobic-flooded, and flooded) on Cd and As accumulation in rice grains of two different varieties. In pot experiment, Cd or As was also added into the soil as treatment. Pots without Cd or As addition were maintained as control. Results indicated that water management practices significantly influenced the Cd and As concentration in rice grains and aerobic cultivation of rice furnished less As concentration in its grains. Nonetheless, Cd concentration in this treatment was higher than the grains of flooded rice. Likewise, in field study, aerobic and flooded rice cultivation recorded higher Cd and As concentration, respectively. However, growing of rice in aerobic-flooded conditions decreased the Cd concentration by 9.38 times on average basis as compared to aerobic rice. Furthermore, this treatment showed 28% less As concentration than that recorded in flooded rice cultivation. The results suggested that aerobic-flooded cultivation may be a promising strategy to reduce the Cd and As accumulations in rice grains simultaneously.

Greenhouse Gas Emissions and Global Warming Potential of Traditional and Diversified Tropical Rice Rotation Systems including Impacts of Upland Crop Management Practices i.e. Mulching and Inter-crop Cultivation

Science.gov (United States)

Janz, Baldur; Weller, Sebastian; Kraus, David; Wassmann, Reiner; Butterbach-Bahl, Klaus; Kiese, Ralf

2016-04-01

Paddy rice cultivation is increasingly challenged by irrigation water scarcity, while at the same time changes in demand (e.g. changes in diets or increasing demand for biofuels) will feed back on agricultural practices. These factors are changing traditional cropping patterns from flooded double-rice systems to the introduction of well-aerated upland crop systems in the dry season. Emissions of methane (CH4) are expected to decrease, while emissions of nitrous oxide (N2O) will increase and soil organic carbon (SOC) stocks will most likely be volatilized in the form of carbon dioxide (CO2). We measured greenhouse gas (GHG) emissions at the International Rice Research Institute (IRRI) in the Philippines to provide a comparative assessment of the global warming potentials (GWP) as well as yield scaled GWPs of different crop rotations and to evaluate mitigation potentials or risks of new management practices i.e. mulching and inter-crop cultivation. New management practices of mulching and intercrop cultivation will also have the potential to change SOC dynamics, thus can play the key role in contributing to the GWP of upland cropping systems. To present, more than three years of continuous measurement data of CH4 and N2O emissions in double-rice cropping (R-R) and paddy rice rotations diversified with either maize (R-M) or aerobic rice (R-A) in upland cultivation have been collected. Introduction of upland crops in the dry season reduced irrigation water use and CH4 emissions by 66-81% and 95-99%, respectively. Moreover, for practices including upland crops, CH4 emissions in the subsequent wet season with paddy rice were reduced by 54-60%. Although annual N2O emissions increased twice- to threefold in the diversified systems, the strong reduction of CH4 led to a significantly lower (pbalance but also with regard to soil fertility. New upland crop management practices where first implemented during land-preparation for dry season (July) 2015 where i) 6t/ha rice straw

Rice cultivation in the farming systems of Sukumaland, Tanzania : a quest for sustainable production under structural adjustment programmes

OpenAIRE

Meertens, H.C.C.

1999-01-01

This thesis investigates options for sustainable rice cultivation and general agricultural development in the Mwanza and Shinyanga regions in northwestern Tanzania, often called Sukumaland due to the predominance of Wasukuma people. Generally Sukumaland has a semi-arid climate; agriculture is constrained by unreliable and low rainfall. In the past fifty years the population density has doubled in most parts. This has triggered several changes in farming systems. One important change ...

Rice methylmercury exposure and mitigation: a comprehensive review.

Science.gov (United States)

Rothenberg, Sarah E; Windham-Myers, Lisamarie; Creswell, Joel E

2014-08-01

Rice cultivation practices from field preparation to post-harvest transform rice paddies into hot spots for microbial mercury methylation, converting less-toxic inorganic mercury to more-toxic methylmercury, which is likely translocated to rice grain. This review includes 51 studies reporting rice total mercury and/or methylmercury concentrations, based on rice (Orzya sativa) cultivated or purchased in 15 countries. Not surprisingly, both rice total mercury and methylmercury levels were significantly higher in polluted sites compared to non-polluted sites (Wilcoxon rank sum, p<0.001). However, rice percent methylmercury (of total mercury) did not differ statistically between polluted and non-polluted sites (Wilcoxon rank sum, p=0.35), suggesting comparable mercury methylation rates in paddy soil across these sites and/or similar accumulation of mercury species for these rice cultivars. Studies characterizing the effects of rice cultivation under more aerobic conditions were reviewed to determine the mitigation potential of this practice. Rice management practices utilizing alternating wetting and drying (instead of continuous flooding) caused soil methylmercury levels to spike, resulting in a strong methylmercury pulse after fields were dried and reflooded; however, it is uncertain whether this led to increased translocation of methylmercury from paddy soil to rice grain. Due to the potential health risks, it is advisable to investigate this issue further, and to develop separate water management strategies for mercury polluted and non-polluted sites, in order to minimize methylmercury exposure through rice ingestion. Copyright © 2014 Elsevier Inc. All rights reserved.

Studies on the Ecological Adaptability of Growing Rice with Floating Bed on the Dilute Biogas Slurry

Science.gov (United States)

Du, Qi; Cheng, Bowen; Liao, Zhiqi; Sun, Chengcheng

2016-01-01

This study aimed to explore the ecological adaptability and the possibility of growing rice with floating bed on the dilute biogas slurry. The results of the experiments show that the growth stage, rice plant height, and rice yield and quality were significantly affected by multiple dilutions; rice plants cultivated with 45 multiple dilutions had better ecological adaptability than others. In the 45 multiple dilutions' group, the yield of rice was 13.3 g/bucket (8 rice plants), milled rice rate was 63.1%, and the content of crude protein in the rice was 6.3%. The concentrations of heavy metals in the rice cultivated with 30 multiple dilutions' slurry, such as total lead, cadmium, mercury, chromium, and arsenic, were all below the national standard. The study shows that it is possible and safe to cultivate rice plants with no soil but diluted biogas slurry. In the experiments, the yield, milled rice rate, and crude protein of the rice cultivated with slurry were not as much as those of rice cultivated with regular way in soil. This study provides the basic theoretical support for the development of biogas projects and the potential achievement of organic farming in special agricultural facilities and circular economy. PMID:27882324

Studies on the Ecological Adaptability of Growing Rice with Floating Bed on the Dilute Biogas Slurry.

Science.gov (United States)

Kang, Qun; Li, Rui; Du, Qi; Cheng, Bowen; Liao, Zhiqi; Sun, Chengcheng; Li, Zhaohua

2016-01-01

This study aimed to explore the ecological adaptability and the possibility of growing rice with floating bed on the dilute biogas slurry. The results of the experiments show that the growth stage, rice plant height, and rice yield and quality were significantly affected by multiple dilutions; rice plants cultivated with 45 multiple dilutions had better ecological adaptability than others. In the 45 multiple dilutions' group, the yield of rice was 13.3 g/bucket (8 rice plants), milled rice rate was 63.1%, and the content of crude protein in the rice was 6.3%. The concentrations of heavy metals in the rice cultivated with 30 multiple dilutions' slurry, such as total lead, cadmium, mercury, chromium, and arsenic, were all below the national standard. The study shows that it is possible and safe to cultivate rice plants with no soil but diluted biogas slurry. In the experiments, the yield, milled rice rate, and crude protein of the rice cultivated with slurry were not as much as those of rice cultivated with regular way in soil. This study provides the basic theoretical support for the development of biogas projects and the potential achievement of organic farming in special agricultural facilities and circular economy.

Utilization of organic fertilizer to increase paddy growth and productivity using System of Rice Intensification (SRI method in saline soil

Directory of Open Access Journals (Sweden)

V . O . Subardja

2016-01-01

Full Text Available Soil salinity has negative effect on soil biodiversity as well as microbial activities. Hence, rice growth also effected by salinity. Application of organic fertilizer and adoption of System of Rice Intensification (SRI cultivation might improve the (biological soil properties and increase rice yield. The aim of this study was to evaluate the effect of two different rice cultivation methods namely conventional rice cultivation method and System of Rice Intensification (SRI rice cultivation method and two kinds organic fertilizer on improvement of soil biological properties and rice yield. In this study, a split plot experimental design was applied where rice cultivation method (conventional and SRI was the main plot and two kinds of organic fertilizer (market waste and rice straw was the sub plot. The treatments had four replicates. The results showed that SRI cultivation with market waste organic fertilizer could increase soil biological properties (population of microbe, fungi and soil respiration. The same treatment also increased rice growth and production. Combination of SRI and market waste organic fertilizer yielded the highest rice production (7.21 t/ha.

Chloroplast DNA polymorphism and evolutional relationships between Asian cultivated rice (Oryza sativa) and its wild relatives (O. rufipogon).

Science.gov (United States)

Li, W J; Zhang, B; Huang, G W; Kang, G P; Liang, M Z; Chen, L B

2012-12-17

We analyzed chloroplast DNA (cpDNA) polymorphism and phylogenic relationships between 6 typical indica rice, 4 japonica rice, 8 javanica rice, and 12 Asian common wild rice (Oryza rufipogon) strains collected from different latitudes in China by comparing polymorphism at 9 highly variable regions. One hundred and forty-four polymorphic bases were detected. The O. rufipogon samples had 117 polymorphic bases, showing rich genetic diversity. One hundred and thirty-one bases at 13 sites were identified with indica/japonica characteristics; they showed differences between the indica and japonica subspecies at these sites. The javanica strains and japonica shared similar bases at these 131 polymorphic sites, suggesting that javanica is closely related to japonica. On the basis of length analyses of the open reading frame (ORF)100 and (ORF)29-tRNA-Cys(GCA) (TrnC(GCA)) fragments, the O. rufipogon strains were classified into indica/japonica subgroups, which was consistent with the results of the phylogenic tree assay based on concatenated datasets. These results indicated that differences in indica and japonica also exist in the cpDNA genome of the O. rufipogon strains. However, these differences demonstrated a certain degree of primitiveness and incompleteness, as an O. rufipogon line may show different indica/ japonica attributes at different sites. Consequently, O. rufipogon cannot be simply classified into the indica/japonica types as O. sativa. Our data support the hypothesis that Asian cultivated rice, O. indica and O. japonica, separately evolved from Asian common wild rice (O. rufipogon) strains, which have different indica-japonica differentiation trends.

Rice methylmercury exposure and mitigation: a comprehensive review

Science.gov (United States)

Rothenberg, Sarah E.; Windham-Myers, Lisamarie; Creswell, Joel E.

2014-01-01

Rice cultivation practices from field preparation to post-harvest transform rice paddies into hot spots for microbial mercury methylation, converting less-toxic inorganic mercury to more-toxic methylmercury, which is likely translocated to rice grain. This review includes 51 studies reporting rice total mercury and/or methylmercury concentrations, based on rice (Orzya sativa) cultivated or purchased in 15 countries. Not surprisingly, both rice total mercury and methylmercury levels were significantly higher in polluted sites compared to non-polluted sites (Wilcoxon rank sum, price percent methylmercury (of total mercury) did not differ statistically between polluted and non-polluted sites (Wilcoxon rank sum, p=0.35), suggesting comparable mercury methylation rates in paddy soil across these sites and/or similar accumulation of mercury species for these rice cultivars. Studies characterizing the effects of rice cultivation under more aerobic conditions were reviewed to determine the mitigation potential of this practice. Rice management practices utilizing alternating wetting and drying (instead of continuous flooding) caused soil methylmercury levels to spike, resulting in a strong methylmercury pulse after fields were dried and reflooded; however, it is uncertain whether this led to increased translocation of methylmercury from paddy soil to rice grain. Due to the potential health risks, it is advisable to investigate this issue further, and to develop separate water management strategies for mercury polluted and non-polluted sites, in order to minimize methylmercury exposure through rice ingestion.

Analysis of Stress-Responsive Gene Expression in Cultivated and Weedy Rice Differing in Cold Stress Tolerance.

Directory of Open Access Journals (Sweden)

Caroline Borges Bevilacqua

Full Text Available Rice (Oryza sativa L. cultivars show impairment of growth in response to environmental stresses such as cold at the early seedling stage. Locally adapted weedy rice is able to survive under adverse environmental conditions, and can emerge in fields from greater soil depth. Cold-tolerant weedy rice can be a good genetic source for developing cold-tolerant, weed-competitive rice cultivars. An in-depth analysis is presented here of diverse indica and japonica rice genotypes, mostly weedy rice, for cold stress response to provide an understanding of different stress adaptive mechanisms towards improvement of the rice crop performance in the field. We have tested a collection of weedy rice genotypes to: 1 classify the subspecies (ssp. grouping (japonica or indica of 21 accessions; 2 evaluate their sensitivity to cold stress; and 3 analyze the expression of stress-responsive genes under cold stress and a combination of cold and depth stress. Seeds were germinated at 25°C at 1.5- and 10-cm sowing depth for 10d. Seedlings were then exposed to cold stress at 10°C for 6, 24 and 96h, and the expression of cold-, anoxia-, and submergence-inducible genes was analyzed. Control plants were seeded at 1.5cm depth and kept at 25°C. The analysis revealed that cold stress signaling in indica genotypes is more complex than that of japonica as it operates via both the CBF-dependent and CBF-independent pathways, implicated through induction of transcription factors including OsNAC2, OsMYB46 and OsF-BOX28. When plants were exposed to cold + sowing depth stress, a complex signaling network was induced that involved cross talk between stresses mediated by CBF-dependent and CBF-independent pathways to circumvent the detrimental effects of stresses. The experiments revealed the importance of the CBF regulon for tolerance to both stresses in japonica and indica ssp. The mechanisms for cold tolerance differed among weedy indica genotypes and also between weedy indica and

Genetic analysis of rice blast disease resistance genes using USDA rice mini-core and a mapping population

Science.gov (United States)

Rice blast disease caused by the fungal pathogen Magnaporthe oryzae (M. oryzae) is one of the most destructive diseases of cultivated rice, resulting in significant yield loss each year all over the world. Developing and utilizing blast resistant rice varieties is the most economical and effective m...

PRELIMINARY STUDIES FOR PRODUCING CRUDE LIPASE FROM TEMPE’S MOULD CULTIVATED IN RICE-HUSK-BASED SOLID MEDIA

Directory of Open Access Journals (Sweden)

Teuku Beuna Bardant

2010-06-01

Full Text Available The goal of these preliminary studies is to support Indonesian program for increasing palm oil added value through independent production technology based on Indonesian natural resources. Various palm oil derivatives could be synthesized enzymatically using lipase from microbes that available in Indonesia. Tempe's mould is available in abundance in Indonesia and had already been proved for producing lipase. This paper provides information about producing crude lipase from Tempe's mould cultivated in rice-husk-based solid media using palm oil as carbon source. Observed variables include solid media composition, optimum fermentation time, extraction and enriching process of crude lipase. The crude lipase was analyzed its hydrolysis activity on coconut oil and palm oil. The result of these preliminary studies shows that this production process is a simple and tough process and very potential to be developed.   Keywords: lipase, Tempe's mould, palm oil, solid fermentation, rice husk

Managing flood prone ecosystem for rice production in Bihar plains

International Nuclear Information System (INIS)

Khan, A.R.; Singh, S.S.

2002-06-01

A large area of the eastern region especially Bihar (0.5 million hectare) faces flood submergence and/or drought every year which creates an unfavorable environment for crop production. In this ecosystem only flood prone rice is grown whose cultivation is entirely different than normal rice crop. Managing the flood prone ecosystem for rice production needs to evaluate the reasons and a comprehensive appropriate technology through research efforts for better rice production under such harsh ecology. An attempt was made to develop a suitable agronomic package for rice cultivation during and after flooding in flood prone plains of Bihar. (author)

Testing of Rice Stocks for Their Survival of Winter Cold

Directory of Open Access Journals (Sweden)

Hiroshi Ikehashi

2018-03-01

Full Text Available Rice cultivation is considered to be initiated by vegetative propagation of sprout from wild perennial stocks. To test whether any presently cultivated rice cultivar can survive the winter cold or not, rice stocks of several cultivars including indica and japonica types were placed in a shallow pool from October to April in 2015–2016 and 2016–2017. During the coldest period of the winter, the bases of the stocks were placed 5–6 cm below the surface of water, where temperatures ranged from 3 °C to 5 °C, while the surface was frozen for two or three times and covered with snow for a day. Only one cultivar, Nipponbare, a japonica type, survived the winter cold and regenerated sprouts in the end of April or early May. A possibility to develop perennial cultivation of rice or perennial hybrid rice is discussed.

The competitiveness of domestic rice production in East Africa: A domestic resource cost approach in Uganda

Directory of Open Access Journals (Sweden)

Masao Kikuchi

2016-03-01

Full Text Available The rapid increase of rice imports in sub-Saharan Africa under the unstable situation in the world rice market during the 2000s has made it an important policy target for the countries in the region to increase self-sufficiency in rice in order to enhance food security. Whether domestic rice production can be competitive with imported rice is a serious question in East African countries that lie close, just across the Arabian Sea, to major rice exporting countries in South Asia. This study investigates the international competitiveness of domestic rice production in Uganda in terms of the domestic resource cost ratio. The results show that rainfed rice cultivation, which accounts for 95% of domestic rice production, does not have a comparative advantage with respect to rice imported from Pakistan, the largest supplier of imported rice to Uganda. However, the degree of non-competitiveness is not serious, and a high possibility exists for Uganda’s rainfed rice cultivation to become internationally competitive by improving yield levels by applying more modern inputs and enhancing labour productivity. Irrigated rice cultivation, though very limited in area, is competitive even under the present input-output structure when the cost of irrigation infrastructure is treated as a sunk cost. If the cost of installing irrigation infrastructure and its operation and maintenance is taken into account, the types of irrigation development that are economically feasible are not large-scale irrigation projects, but are small- and microscale projects for lowland rice cultivation and rain-water harvesting for upland rice cultivation.

Signatures of adaptation in the weedy rice genome

Science.gov (United States)

Weedy rice is a common problem of by product of domestication that has evolved multiple times from cultivated and wild rice relatives. Here we use whole genome sequences to examine the origin and adaptation of the two major US weedy red rice strains, with a comparison to Chinese weedy red rice. We f...

Cultivation of Schizophyllum commune mushroom on different wood substrates

Directory of Open Access Journals (Sweden)

P.N. Dasanayaka

2017-07-01

Full Text Available Schizophyllum commune is an edible mushroom grown on wood under natural conditions. Present study focused on cultivation of S.commune on different wood substrates since it is not commercially cultivated. A pure culture of S. commune was obtained by growing a tissue of the mushroom on Potato Dextrose Agar (PDA medium. Spawns were produced by growing the mycelium on paddy grains. Mushroom was cultivated on sawdust of seven different wood substrates. The maximum yield was observed in sawdust of jackfruit (Artocarpusheterophyllus followed by sawdust of rambutan (Nepheliumlappaceum and country almond (Terminaliacatappa. A significant difference was not observed when mango (Mangiferaindica elephant apple (Dilleniaindica, tulip wood tree (Harpulliaarborea and thungfaa (Alstoniamacrophylla sawdust used as substrate. The lowest yield was observed in thungfaa (Alstoniamacrophylla sawdust. Effect of some additives on the yield was studied and significant difference in yield was observed when rice bran and used-tea leaves used as additives. Effect of rice bran on yield was studied using different ratios of sawdust to rice bran and the highest was observed in 2:1 ratio of sawdust to rice bran. The best incubating temperature for mycelial growth on the substrate was 350C. The composition of the mushroom on a dry weight basis was; 71.4% moisture, 23.35% crude protein and 6% ash. Tested wood species are promising substrates for cultivation of S.communeas cottage industry.

Natural variation of rice blast resistance gene Pi-d2

Science.gov (United States)

Studying natural variation of rice resistance (R) genes in cultivated and wild rice relatives can predict resistance stability to rice blast fungus. In the present study, the protein coding regions of rice R gene Pi-d2 in 35 rice accessions of subgroups, aus (AUS), indica (IND), temperate japonica (...

Understanding the social and economic aspects of upland rice farming

Science.gov (United States)

Taridala, S. A. A.; Abdullah, W. G.; Suaib; Wahyuni, S.; Wianti, N. I.; Zani, M.; Jabuddin, L. O.; Yusria, W. O.; Limi, M. A.; Ekaputri, A. S.

2018-02-01

The objectives of this study were to (1) analyze the socio-economic characteristics of upland rice farmers, and (2) to analyze the productivity of farming in South Konawe Regency of Southeast Sulawesi Province, Indonesia. The analysis used in this research was combine economic research through quantitative and qualitative analysis. This research was conducted by survey method. The results showed that (1) farmers are generally in productive age, dominated by men, with low formal education level, and moderate family members, (2) upland rice farming is cultivated in medium land area, with fixed costs higher than variable cost, productivity that has been increased but still lower than rice paddy, and the price of rice production is relatively higher than rice paddy production price, and (3) feasible to cultivate dryland rice, and has a high efficiency value.

Can rice field channels contribute to biodiversity conservation in Southern Brazilian wetlands?

Science.gov (United States)

Maltchik, Leonardo; Rolon, Ana Silvia; Stenert, Cristina; Machado, Iberê Farina; Rocha, Odete

2011-12-01

Conservation of species in agroecosystems has attracted attention. Irrigation channels can improve habitats and offer conditions for freshwater species conservation. Two questions from biodiversity conservation point of view are: 1) Can the irrigated channels maintain a rich diversity of macrophytes, macroinvertebrates and amphibians over the cultivation cycle? 2) Do richness, abundance and composition of aquatic species change over the rice cultivation cycle? For this, a set of four rice field channels was randomly selected in Southern Brazilian wetlands. In each channel, six sample collection events were carried out over the rice cultivation cycle (June 2005 to June 2006). A total of 160 taxa were identified in irrigated channels, including 59 macrophyte species, 91 taxa of macroinvertebrate and 10 amphibian species. The richness and abundance of macrophytes, macroinvertebrates and amphibians did not change significantly over the rice cultivation cycle. However, the species composition of these groups in the irrigation channels varied between uncultivated and cultivated periods. Our results showed that the species diversity found in the irrigation channels, together with the permanence of water enables these man-made aquatic networks to function as important systems that can contribute to the conservation of biodiversity in regions where the wetlands were converted into rice fields. The conservation of the species in agriculture, such as rice field channels, may be an important alternative for biodiversity conservation in Southern Brazil, where more than 90% of wetland systems have already been lost and the remaining ones are still at high risk due to the expansion of rice production.

Saving water? : analysis of options for rice-based farms in Tamil Nadu, India

NARCIS (Netherlands)

Senthilkumar, K.

2008-01-01

Keywords: Modified rice cultivation, Water-saving, Farm typology, Technology adoption, Policy interventions, Farmers livelihoods, Resource use efficiency and Linear programming.

The looming water crisis and water-intensive nature of rice cultivation are driving the search for alternative

Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice

Directory of Open Access Journals (Sweden)

Olsen Kenneth M

2010-06-01

Full Text Available Abstract Background Weedy rice (red rice, a conspecific weed of cultivated rice (Oryza sativa L., is a significant problem throughout the world and an emerging threat in regions where it was previously absent. Despite belonging to the same species complex as domesticated rice and its wild relatives, the evolutionary origins of weedy rice remain unclear. We use genome-wide patterns of single nucleotide polymorphism (SNP variation in a broad geographic sample of weedy, domesticated, and wild Oryza samples to infer the origin and demographic processes influencing U.S. weedy rice evolution. Results We find greater population structure than has been previously reported for U.S. weedy rice, and that the multiple, genetically divergent populations have separate origins. The two main U.S. weedy rice populations share genetic backgrounds with cultivated O. sativa varietal groups not grown commercially in the U.S., suggesting weed origins from domesticated ancestors. Hybridization between weedy groups and between weedy rice and local crops has also led to the evolution of distinct U.S. weedy rice populations. Demographic simulations indicate differences among the main weedy groups in the impact of bottlenecks on their establishment in the U.S., and in the timing of divergence from their cultivated relatives. Conclusions Unlike prior research, we did not find unambiguous evidence for U.S. weedy rice originating via hybridization between cultivated and wild Oryza species. Our results demonstrate the potential for weedy life-histories to evolve directly from within domesticated lineages. The diverse origins of U.S. weedy rice populations demonstrate the multiplicity of evolutionary forces that can influence the emergence of weeds from a single species complex.

Effect of Interplanting with Zero Tillage and Straw Manure on Rice Growth and Rice Quality

Directory of Open Access Journals (Sweden)

Shi-ping LIU

2007-09-01

Full Text Available The interplanting with zero-tillage of rice, i.e. direct sowing rice 10–20 days before wheat harvesting, and remaining about 30-cm high stubble after cutting wheat or rice with no tillage, is a new cultivation technology in wheat-rice rotation system. To study the effects of interplanting with zero tillage and straw manure on rice growth and quality, an experiment was conducted in a wheat-rotation rotation system. Four treatments, i.e. ZIS (Zero-tillage, straw manure and rice interplanting, ZI (Zero-tillage, no straw manure and rice interplanting, PTS (Plowing tillage, straw manure and rice transplanting, and PT (Plowing tillage, no straw manure and rice transplanting, were used. ZIS reduced plant height, leaf area per plant and the biomass of rice plants, but the biomass accumulation of rice at the late stage was quicker than that under conventional transplanting cultivation. In the first year (2002, there was no significant difference in rice yield among the four treatments. However, rice yield decreased in interplanting with zero-tillage in the second year (2003. Compared with the transplanting treatments, the number of filled grains per panicle decreased but 1000-grain weight increased in interplanting with zero-tillage, which were the main factors resulting in higher yield. Interplanting with zero-tillage improved the milling and appearance qualities of rice. The rates of milled and head rice increased while chalky rice rate and chalkiness decreased in interplanting with zero-tillage. Zero-tillage and interplanting also affected rice nutritional and cooking qualities. In 2002, ZIS showed raised protein content, decreased amylose content, softer gel consistency, resulting in improved rice quality. In 2003, zero-tillage and interplanting decreased protein content and showed similar amylose content as compared with transplanting treatments. Moreover, protein content in PTS was obviously increased in comparison with the other three treatments

Proteomic analysis of seed storage proteins in wild rice species of the Oryza genus.

Science.gov (United States)

Jiang, Chunmiao; Cheng, Zaiquan; Zhang, Cheng; Yu, Tengqiong; Zhong, Qiaofang; Shen, J Qingxi; Huang, Xingqi

2014-01-01

The total protein contents of rice seeds are significantly higher in the three wild rice species (Oryza rufipogon Grill., Oryza officinalis Wall. and Oryza meyeriana Baill.) than in the cultivated rice (Oryza sativa L.). However, there is still no report regarding a systematic proteomic analysis of seed proteins in the wild rice species. Also, the relationship between the contents of seed total proteins and rice nutritional quality has not been thoroughly investigated. The total seed protein contents, especially the glutelin contents, of the three wild rice species were higher than those of the two cultivated rice materials. Based on the protein banding patterns of SDS-PAGE, O. rufipogon was similar to the two cultivated rice materials, followed by O. officinalis, while O. meyeriana exhibited notable differences. Interestingly, O. meyeriana had high contents of glutelin and low contents of prolamine, and lacked 26 kDa globulin band and appeared a new 28 kDa protein band. However, for O. officinali a 16 kDa protein band was absent and a row of unique 32 kDa proteins appeared. In addition, we found that 13 kDa prolamine band disappeared while special 14 kDa and 12 kDa protein bands were present in O. officinalis. Two-dimensional gel electrophoresis (2-DE) analysis revealed remarkable differences in protein profiles of the wild rice species and the two cultivated rice materials. Also, the numbers of detected protein spots of the three wild rice species were significantly higher than those of two cultivated rice. A total of 35 differential protein spots were found for glutelin acidic subunits, glutelin precursors and glutelin basic subunits in wild rice species. Among those, 18 protein spots were specific and 17 major spots were elevated. Six differential protein spots for glutelin acidic subunits were identified, including a glutelin type-A 2 precursor and five hypothetical proteins. This was the first report on proteomic analysis of the three wild rice species

A System Designed for Rice? Materiality and the Invention/Discovery of the System of Rice Intensification

NARCIS (Netherlands)

Glover, D.

2011-01-01

The System of Rice Intensification (SRI) is a novel approach to rice cultivation that is claimed to be both more productive and more sustainable than conventional methods. It is said to have been discovered by a French Jesuit missionary working in Madagascar during the 1970s and 1980s. The system

All roads lead to weediness: patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza

Science.gov (United States)

Weedy rice (Oryza spp.), a weedy relative of cultivated rice (O. sativa), invades and persists in cultivated rice fields worldwide. Many weedy rice populations have evolved similar adaptive traits, considered part of the “agricultural weed syndrome,” making this an ideal model to study the genetic b...

Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice

Science.gov (United States)

Cui, Yongxia; Song, Beng Kah; Li, Lin-Feng; Li, Ya-Ling; Huang, Zhongyun; Caicedo, Ana L.; Jia, Yulin; Olsen, Kenneth M.

2016-01-01

Weedy rice is a conspecific form of cultivated rice (Oryza sativa L.) that infests rice fields and results in severe crop losses. Weed strains in different world regions appear to have originated multiple times from different domesticated and/or wild rice progenitors. In the case of Malaysian weedy rice, a multiple-origin model has been proposed based on neutral markers and analyses of domestication genes for hull color and seed shattering. Here, we examined variation in pericarp (bran) color and its molecular basis to address how this trait evolved in Malaysian weeds and its possible role in weed adaptation. Functional alleles of the Rc gene confer proanthocyanidin pigmentation of the pericarp, a trait found in most wild and weedy Oryzas and associated with seed dormancy; nonfunctional rc alleles were strongly favored during rice domestication, and most cultivated varieties have nonpigmented pericarps. Phenotypic characterizations of 52 Malaysian weeds revealed that most strains are characterized by the pigmented pericarp; however, some weeds have white pericarps, suggesting close relationships to cultivated rice. Phylogenetic analyses indicate that the Rc haplotypes present in Malaysian weeds likely have at least three distinct origins: wild O. rufipogon, white-pericarp cultivated rice, and red-pericarp cultivated rice. These diverse origins contribute to high Rc nucleotide diversity in the Malaysian weeds. Comparison of Rc allelic distributions with other rice domestication genes suggests that functional Rc alleles may confer particular fitness benefits in weedy rice populations, for example, by conferring seed dormancy. This may promote functional Rc introgression from local wild Oryza populations. PMID:27729434

Global Rice Atlas: Disaggregated seasonal crop calendar and production

NARCIS (Netherlands)

Balanza, Jane Girly; Gutierrez, Mary Anne; Villano, Lorena; Nelson, A.D.; Zwart, S.J.; Boschetti, Mirco; Koo, Jawoo; Reinke, Russell; Murty, M. V.R.; Laborte, Alice G.

2014-01-01

Purpose: Rice is an important staple crop cultivated in more than 163 million ha globally. Although information on the distribution of global rice production is available by country and, at times, at subnational level, information on its distribution within a year is often lacking in different rice

Microbe observation and cultivation array (MOCA) for cultivating and analyzing environmental microbiota.

Science.gov (United States)

Gao, Weimin; Navarroli, Dena; Naimark, Jared; Zhang, Weiwen; Chao, Shih-Hui; Meldrum, Deirdre R

2013-01-09

The use of culture-independent nucleic acid techniques, such as ribosomal RNA gene cloning library analysis, has unveiled the tremendous microbial diversity that exists in natural environments. In sharp contrast to this great achievement is the current difficulty in cultivating the majority of bacterial species or phylotypes revealed by molecular approaches. Although recent new technologies such as metagenomics and metatranscriptomics can provide more functionality information about the microbial communities, it is still important to develop the capacity to isolate and cultivate individual microbial species or strains in order to gain a better understanding of microbial physiology and to apply isolates for various biotechnological applications. We have developed a new system to cultivate bacteria in an array of droplets. The key component of the system is the microbe observation and cultivation array (MOCA), which consists of a Petri dish that contains an array of droplets as cultivation chambers. MOCA exploits the dominance of surface tension in small amounts of liquid to spontaneously trap cells in well-defined droplets on hydrophilic patterns. During cultivation, the growth of the bacterial cells across the droplet array can be monitored using an automated microscope, which can produce a real-time record of the growth. When bacterial cells grow to a visible microcolony level in the system, they can be transferred using a micropipette for further cultivation or analysis. MOCA is a flexible system that is easy to set up, and provides the sensitivity to monitor growth of single bacterial cells. It is a cost-efficient technical platform for bioassay screening and for cultivation and isolation of bacteria from natural environments.

An Investigation of Factors Affecting the Management of Risk for the Rice Cultivating Women in Sari Town with LISREL Application

Directory of Open Access Journals (Sweden)

M. charmchian Langerodi

2016-03-01

Full Text Available Introduction Agriculture relies on nature and farmers face environmental, social, financial and legal issues that makes farming to be consistently and strongly associated with risk. Agriculture can be considered to be the most risky economic venture. Ahmadi (1 listed several main sources of risk that farmers face. Economic risk includes price fluctuations for raw materials such as seed and fertilizer and for machinery at the pre-market delivery stage, difficulty obtaining bank credit and loans, price volatility for products in the post market delivery stage, inconsistent government policies for products and global fluctuations in the price of products. Social risk includes theft of crops, production and agricultural machinery and war. Nature-related risk includes natural disasters, climate change, agricultural pests and diseases. Market risk includes changes in the price of raw materials and products and increasing interest rates. Given that the range of agricultural activities having critical risk are diverse and the climate can vary widely, more sophisticated services are needed to meet the demands, cope with hazards and decrease risk. Understanding how women rice farmers deal with risk is essential for educators, and agriculture-related industries such as insurance, and policymakers. If the attitudes of these women towards risk are accurately recognized, risk management strategies, risk-related educational programs and risk strategies can be designed to meet their needs. The overallaim of this research isto investigate factors affecting risk management, and proposing and designing a model among rice cultivating women in Sari. Materials and Methods: The population of the study comprised 1677rice cultivating women in Sari of whom 248 were selected through stratified random sampling. A combination of quantitative, and descriptive-inferential statistics served as the methodology for the study and SPSS 16 and LISREL were applied for data analysis

From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700-500 BC.

Directory of Open Access Journals (Sweden)

Zhenhua Deng

Full Text Available Baligang is a Neolithic site on a northern tributary of the middle Yangtze and provides a long archaeobotanical sequence from the Seventh Millennium BC upto the First Millennium BC. It provides evidence for developments in rice and millet agriculture influenced by shifting cultural affiliation with the north (Yangshao and Longshan and south (Qujialing and Shijiahe between 4300 and 1800 BC. This paper reports on plant macro-remains (seeds, from systematic flotation of 123 samples (1700 litres, producing more than 10,000 identifiable remains. The earliest Pre-Yangshao occupation of the sites provide evidence for cultivation of rice (Oryza sativa between 6300-6700 BC. This rice appears already domesticated in on the basis of a dominance of non-shattering spikelet bases. However, in terms of grain size changes has not yet finished, as grains are still thinner than more recent domesaticated rice and are closer in grain shape to wild rices. This early rice was cultivated alongside collection of wild staple foods, especially acorns (Quercus/Lithicarpus sensu lato. In later periods the sites has evidence for mixed farming of both rice and millets (Setaria italica and Panicum miliaceum. Soybean appears on the site in the Shijiahe period (ca.2500 BC and wheat (Triticum cf. aestivum in the Late Longshan levels (2200-1800 BC. Weed flora suggests an intensification of rice agriculture over time with increasing evidence of wetland weeds. We interpret these data as indicating early opportunistic cultivation of alluvial floodplains and some rainfed rice, developing into more systematic and probably irrigated cultivation starting in the Yangshao period, which intensified in the Qujialing and Shijiahe period, before a shift back to an emphasis on millets with the Late Longshan cultural influence from the north.

Understanding the evolution of rice technology in China - from traditional agriculture to GM rice today.

Science.gov (United States)

Shen, Xiaobai

2010-01-01

This paper provides an historical survey of the evolution of rice technology in China, from the traditional farming system to genetically modified rice today. Using sociotechnological analytical framework, it analyses rice technology as a socio-technical ensemble - a complex interaction of material and social elements, and discusses the specificity of technology development and its socio-technical outcomes. It points to two imperatives in rice variety development: wholesale transporting agricultural technology and social mechanism to developing countries are likely lead to negative consequences; indigenous innovation including deploying GM technology for seed varietal development and capturing/cultivating local knowledge will provide better solutions.

From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700–500 BC)

Science.gov (United States)

Deng, Zhenhua; Qin, Ling; Gao, Yu; Weisskopf, Alison Ruth; Zhang, Chi; Fuller, Dorian Q.

2015-01-01

Baligang is a Neolithic site on a northern tributary of the middle Yangtze and provides a long archaeobotanical sequence from the Seventh Millennium BC upto the First Millennium BC. It provides evidence for developments in rice and millet agriculture influenced by shifting cultural affiliation with the north (Yangshao and Longshan) and south (Qujialing and Shijiahe) between 4300 and 1800 BC. This paper reports on plant macro-remains (seeds), from systematic flotation of 123 samples (1700 litres), producing more than 10,000 identifiable remains. The earliest Pre-Yangshao occupation of the sites provide evidence for cultivation of rice (Oryza sativa) between 6300–6700 BC. This rice appears already domesticated in on the basis of a dominance of non-shattering spikelet bases. However, in terms of grain size changes has not yet finished, as grains are still thinner than more recent domesaticated rice and are closer in grain shape to wild rices. This early rice was cultivated alongside collection of wild staple foods, especially acorns (Quercus/Lithicarpus sensu lato). In later periods the sites has evidence for mixed farming of both rice and millets (Setaria italica and Panicum miliaceum). Soybean appears on the site in the Shijiahe period (ca.2500 BC) and wheat (Triticum cf. aestivum) in the Late Longshan levels (2200–1800 BC). Weed flora suggests an intensification of rice agriculture over time with increasing evidence of wetland weeds. We interpret these data as indicating early opportunistic cultivation of alluvial floodplains and some rainfed rice, developing into more systematic and probably irrigated cultivation starting in the Yangshao period, which intensified in the Qujialing and Shijiahe period, before a shift back to an emphasis on millets with the Late Longshan cultural influence from the north. PMID:26460975

LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.

Science.gov (United States)

Hua, Lei; Wang, Diane R; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Xiao, Langtao; Zhu, Zuofeng; Fu, Qiang; Sun, Xianyou; Gu, Ping; Cai, Hongwei; McCouch, Susan R; Sun, Chuanqing

2015-07-01

Common wild rice (Oryza rufipogon), the wild relative of Asian cultivated rice (Oryza sativa), flaunts long, barbed awns, which are necessary for efficient propagation and dissemination of seeds. By contrast, O. sativa cultivars have been selected to be awnless or to harbor short, barbless awns, which facilitate seed processing and storage. The transition from long, barbed awns to short, barbless awns was a crucial event in rice domestication. Here, we show that the presence of long, barbed awns in wild rice is controlled by a major gene on chromosome 4, LONG AND BARBED AWN1 (LABA1), which encodes a cytokinin-activating enzyme. A frame-shift deletion in LABA1 of cultivated rice reduces the cytokinin concentration in awn primordia, disrupting barb formation and awn elongation. Sequencing analysis demonstrated low nucleotide diversity and a selective sweep encompassing an ∼800-kb region around the derived laba1 allele in cultivated rice. Haplotype analysis revealed that the laba1 allele originated in the japonica subspecies and moved into the indica gene pool via introgression, suggesting that humans selected for this locus in early rice domestication. Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development. © 2015 American Society of Plant Biologists. All rights reserved.

Tolerance to zinc deficiency in rice correlates with zinc uptake and translocation

NARCIS (Netherlands)

Gao, X.; Zou, C.Q.; Zee, van der S.E.A.T.M.; Hoffland, E.

2005-01-01

To study variation in zinc efficiency (ZE) among current Chinese rice genotypes, a pot experiment was conducted with 15 aerobic and 8 lowland rice genotypes. Aerobic rice is currently bred by crossing lowland with upland rice genotypes, for growth in an aerobic cultivation system, which is saving

Cultivation of oyster mushroom ( Pleurotus spp.) on palm oil ...

African Journals Online (AJOL)

Oyster mushroom is a popular mushroom due to its nutritional, medicinal and potential commercial value. In Malaysia, the fungus is currently cultivated on sawdust and rice husk. In this study, the efficiency of cultivating oyster mushroom was assessed using palm oil mesocarp fibre as a substrate. The experiment consisted ...

Effects of ridge tillage on photosynthesis and root characters of rice

Directory of Open Access Journals (Sweden)

Yao Yuan-zhi

2015-03-01

Full Text Available Rice (Oryza sativa L. is an important crop and breeding has not been able to improve yield. Root characteristics of hybrid rice 'Zhuliangyou 02' under conventional tillage and ridge tillage were studied in a Calcisols in Huaihua, China, from 2011 to 2013 to find better tillage methods to resolve massive water consumption, improve yield, and enhance productivity of agricultural labor for rice cultivation. Results showed ridge tillage increased photosynthetic parameters such as photosynthetic rate (P N, stomatal conductance (g s, and water use efficiency (WUE. It also significantly enhanced rice root number, root activity, and antioxidant enzyme activities; it also increased effective panicle number and actual yield by 22.12% and 15.18%, respectively, and enhanced aerenchymae during the early growth stage. Overall, ridge tillage could promote hybrid rice yields by enhancing root absorption, gas exchange, and reducing water consumption. It could be widely used in rice cultivation.

Research Advances in High-Yielding Cultivation and Physiology of Super Rice

Directory of Open Access Journals (Sweden)

Jing FU

2012-09-01

Full Text Available In 1996, China launched a program to breed super rice or super hybrid rice by combining intersubspecific heterosis with ideal plant types. Today, approximately 80 super rice varieties have been released and some of them show high grain yields of 12–21 t/hm2 in field experiments. The main reasons for the high yields of super rice varieties, compared with those of conventional varieties, can be summarized as follows: more spikelets per panicle and larger sink size (number of spikelets per square meter; larger leaf area index, longer duration of green leaf, greater photosynthetic rate, higher lodging resistance, greater dry matter accumulation before the heading stage, greater remobilization of pre-stored carbohydrates from stems and leaves to grains during the grain-filling period; and larger root system and greater root activity. However, there are two main problems in super rice production: poor grain-filling of the later-flowering inferior spikelets (in contrast to earlier-flowering superior spikelets, and low and unstable seed-setting rate. Here, we review recent research advances in the crop physiology of super rice, focusing on biological features, formation of yield components, and population quality. Finally, we suggest further research on crop physiology of super rice.

Relative availability of crop residue-N in rice cultivation

International Nuclear Information System (INIS)

Sirwando, H; Abdullah, N.

1988-01-01

The use of plant residues for soil amendment will reduce the use of chemical fertilizers. The experiment to study the uptake of N from various plant residues by rice crop. Three kinds of plant residue of soybean labelled with 15-N. Four levels of urea (0, 15, 30, 40 kg N/ha) were applied to aluvial soil from Pusakanegara. The factorial experiment was conducted in fully randomize design, with plant residues as the main treatment, and rate of urea as substreatment. The results obtained from this experiment showed that plant dry weight, N content of grain, straw, and the whole plant of Atomita I rice treated with soybean strow seens to be higher than those treated with the straw of rice or corn. (author). 6 refs.; 7 tabs

Microalgal cultivation with biogas slurry for biofuel production.

Science.gov (United States)

Zhu, Liandong; Yan, Cheng; Li, Zhaohua

2016-11-01

Microalgal growth requires a substantial amount of chemical fertilizers. An alternative to the utilization of fertilizer is to apply biogas slurry produced through anaerobic digestion to cultivate microalgae for the production of biofuels. Plenty of studies have suggested that anaerobic digestate containing high nutrient contents is a potentially feasible nutrient source to culture microalgae. However, current literature indicates a lack of review available regarding microalgal cultivation with biogas slurry for the production of biofuels. To help fill this gap, this review highlights the integration of digestate nutrient management with microalgal production. It first unveils the current status of microalgal production, providing basic background to the topic. Subsequently, microalgal cultivation technologies using biogas slurry are discussed in detail. A scale-up scheme for simultaneous biogas upgrade and digestate application through microalgal cultivation is then proposed. Afterwards, several uncertainties that might affect this practice are explored. Finally, concluding remarks are put forward. Copyright © 2016 Elsevier Ltd. All rights reserved.

Mapping Changes in Area and the Cropping Season of Irrigated Rice in Senegal and Mauritania between 2003 and 2014 Using the PhenoRice Algorithm and MODIS Imagery

Science.gov (United States)

Zwart, S.; Busetto, L.; Diagne, M.; Boschetti, M.; Nelson, A.

2017-12-01

Government policies have resulted in rapid expansion of irrigated rice area in Mauritania and Senegal through private and public investments. Farmers switch rice cultivation from the wet to the dry season to achieve higher production while rice double cropping is increasingly practiced. As a result Senegal is close to attaining self-sufficiency in the coming years. However, tools to monitor those changes are absent and this inhibits assessments on for example its impact on wetlands located in the delta area, increased water demands and climate induced risks to farmers. In this study we aimed to map changes in irrigated rice area in the wet and dry seasons. We applied the PhenoRice algorithm on a combined time-series of MODIS Aqua and Terra images obtained between 2003 and 2016 to map pixels dominated by rice and determine the start, end and length of the growing season from sowing/transplanting to maturity. Between 2002 and 2010 researchers from the Africa Rice Center interviewed annually around 100 rice farmers located in two irrigation schemes in Senegal. We extracted the reported sowing/transplanting and harvest dates from the data base and used these to validate the estimates obtained by PhenoRice. We also compared the obtained rice areas with official statistics provided by the Senegalese Ministry of Agriculture. Analysis of PhenoRice results highlighted that starting 2008, rice farmers cultivate also during the dry season; the area is steadily increasing from 2008 onwards and in the recent years approximately almost equals that of the wet season. This was confirmed by official statistics, though the total area estimated by PhenoRice is smaller than reported, most likely due to the mismatch between pixel size and the small cultivated areas. However, the algorithm was able to detect the overall trends and inter-annual variations observed in the wet (r2=0.57) and dry season rice cultivated area (r2=0.91). The start of the season, that varied maximally 4 weeks

LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice[OPEN

Science.gov (United States)

Hua, Lei; Wang, Diane R.; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Xiao, Langtao; Zhu, Zuofeng; Fu, Qiang; Sun, Xianyou; Gu, Ping; Cai, Hongwei; McCouch, Susan R.; Sun, Chuanqing

2015-01-01

Common wild rice (Oryza rufipogon), the wild relative of Asian cultivated rice (Oryza sativa), flaunts long, barbed awns, which are necessary for efficient propagation and dissemination of seeds. By contrast, O. sativa cultivars have been selected to be awnless or to harbor short, barbless awns, which facilitate seed processing and storage. The transition from long, barbed awns to short, barbless awns was a crucial event in rice domestication. Here, we show that the presence of long, barbed awns in wild rice is controlled by a major gene on chromosome 4, LONG AND BARBED AWN1 (LABA1), which encodes a cytokinin-activating enzyme. A frame-shift deletion in LABA1 of cultivated rice reduces the cytokinin concentration in awn primordia, disrupting barb formation and awn elongation. Sequencing analysis demonstrated low nucleotide diversity and a selective sweep encompassing an ∼800-kb region around the derived laba1 allele in cultivated rice. Haplotype analysis revealed that the laba1 allele originated in the japonica subspecies and moved into the indica gene pool via introgression, suggesting that humans selected for this locus in early rice domestication. Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development. PMID:26082172

Science, practice and the System of Rice Intensification in Indian agriculture

NARCIS (Netherlands)

Glover, D.

2011-01-01

The System of Rice Intensification (SRI) is claimed to be a novel approach to rice cultivation that is both more productive and more sustainable than conventional methods. Such claims have been challenged or dismissed by many rice scientists, however. Despite the lack of clear and unequivocal

Rice Seedling Substrate Produced by Coal Gangue

Directory of Open Access Journals (Sweden)

SHAO Yu-fei

2017-10-01

Full Text Available Peats are the mostly used material in making rice seedling substrate. However, mining peats could cause environmental problems. In order to reduce or replace peats in rice seedling substrate industry, this paper studied suitable way to configure rice seedling. The coal gangue was used to experiment cultivating rice. Four rice seeding experiments were carried out based on physical and chemical properties of materials attributes. The results showed:(1 Coal gangue was feasible for rice seedling; (2 The maximum adding amount of coal gangue was 80%(volume ratio though the coal gangue need to be activated; (3 In the case of no activated treatment only 38%(volume ratio of coal gangue could be added to the substrate.

RPAN: rice pan-genome browser for ∼3000 rice genomes.

Science.gov (United States)

Sun, Chen; Hu, Zhiqiang; Zheng, Tianqing; Lu, Kuangchen; Zhao, Yue; Wang, Wensheng; Shi, Jianxin; Wang, Chunchao; Lu, Jinyuan; Zhang, Dabing; Li, Zhikang; Wei, Chaochun

2017-01-25

A pan-genome is the union of the gene sets of all the individuals of a clade or a species and it provides a new dimension of genome complexity with the presence/absence variations (PAVs) of genes among these genomes. With the progress of sequencing technologies, pan-genome study is becoming affordable for eukaryotes with large-sized genomes. The Asian cultivated rice, Oryza sativa L., is one of the major food sources for the world and a model organism in plant biology. Recently, the 3000 Rice Genome Project (3K RGP) sequenced more than 3000 rice genomes with a mean sequencing depth of 14.3×, which provided a tremendous resource for rice research. In this paper, we present a genome browser, Rice Pan-genome Browser (RPAN), as a tool to search and visualize the rice pan-genome derived from 3K RGP. RPAN contains a database of the basic information of 3010 rice accessions, including genomic sequences, gene annotations, PAV information and gene expression data of the rice pan-genome. At least 12 000 novel genes absent in the reference genome were included. RPAN also provides multiple search and visualization functions. RPAN can be a rich resource for rice biology and rice breeding. It is available at http://cgm.sjtu.edu.cn/3kricedb/ or http://www.rmbreeding.cn/pan3k. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Development and appraisal of economical and sustainable approach for weed management in drill seeded aerobic rice (oryza sativa l.)

International Nuclear Information System (INIS)

Saqib, M.; Akbar, N.; Ehsanullah, A.; Ghafoor, A.

2012-01-01

Conventional rice cultivation by puddling and transplanting is a labor intensive activity. Water scarcity is a threat for the sustain ability of transplanted rice. In many areas of Asia, rice transplantation of rice is being replaced by direct seeding as farmers tried to solve the problems of labor cost and water scarcity but weed control is one of the major constraints to direct seeding. So, to control weeds in direct seeded rice present studies were designed. A two years study was conducted to develop sustainable and economical methods for managing weeds in aerobic rice grown by dry direct-seeding at Student's Farm, Department of Agronomy, University of Agriculture, Faisalabad during the years 2008 and 2009. Experiment was laid out in RCBD with five weed management strategies: hand weeding, hoeing with kasula, inter-row cultivation with tine cultivator, inter-row cultivation with spike hoe and chemical control with Nominee 100 SC along with control (no weeding). Weed dry weight was 300 g m/sup -2/, 257 g m/sup -2/, 225 g m/sup -2/ and 157 g m/sup -2/ less in hand weeding, hoeing, tine cultivator and Nominee 100 SC respectively than no weeding. Paddy yield was 221%, 203%, 181% and 105% more in hand weeding, hoeing, tine cultivator and Nominee 100 SC respectively than no weeding. (author)

Concentration of some heavy metals in rice types available in Shiraz market and human health risk assessment.

Science.gov (United States)

Naseri, Mahmood; Vazirzadeh, Arya; Kazemi, Robabeh; Zaheri, Farnaz

2015-05-15

This investigation was conducted to survey the levels of some heavy metals such as cadmium, lead, chromium, nickel and cobalt in domestic cultivated and imported rice sold on the Shiraz - Iran markets. The potential human health risk assessment was conducted by considering estimated weekly intake (EWI) of toxic metals from eating rice and compared calculated values with provisional tolerable weekly intake (PTWI). The mean values for lead and cadmium in domestic cultivated and imported rice were considerably higher than allowable limits set by FAO/WHO. In combination of recent rice consumption data, the estimated weekly intakes of toxic element were calculated for Iranian population. EWI for cadmium, nickel, chromium through imported and domestic cultivated rice consumption was lower than the PTWI. The EWI for lead were considerably higher than other measured toxic metals. The highest mean level of EWI for lead was observed in some imported rice samples (25.76 μg/kg body weight). Copyright © 2014 Elsevier Ltd. All rights reserved.

Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia.

Science.gov (United States)

Thomas, Evert; Tovar, Eduardo; Villafañe, Carolina; Bocanegra, José Leonardo; Moreno, Rodrigo

2017-12-01

Crop wild relatives (CWRs) of rice hold important traits that can contribute to enhancing the ability of cultivated rice (Oryza sativa and O. glaberrima) to produce higher yields, cope with the effects of climate change, and resist attacks of pests and diseases, among others. However, the genetic resources of these species remain dramatically understudied, putting at risk their future availability from in situ and ex situ sources. Here we assess the distribution of genetic diversity of the four rice CWRs known to occur in Colombia (O. glumaepatula, O. alta, O. grandiglumis, and O. latifolia). Furthermore, we estimated the degree of overlap between areas with suitable habitat for cultivated and wild rice, both under current and predicted future climate conditions to assess the potential spatiotemporal scale of potential gene flow from GM rice to its CWRs. Our findings suggest that part of the observed genetic diversity and structure, at least of the most exhaustively sampled species, may be explained by their glacial and post-glacial range dynamics. Furthermore, in assessing the expected impact of climate change and the potential spatiotemporal scale of gene flow between populations of CWRs and GM rice we find significant overlap between present and future suitable areas for cultivated rice and its four CWRs. Climate change is expected to have relatively limited negative effects on the rice CWRs, with three species showing opportunities to expand their distribution ranges in the future. Given (i) the sparse presence of CWR populations in protected areas (ii) the strong suitability overlap between cultivated rice and its four CWRs; and (iii) the complexity of managing and regulating areas to prevent alien gene flow, the first priority should be to establish representative ex situ collections for all CWR species, which currently do not exist. In the absence of studies under field conditions on the scale and extent of gene flow between cultivated rice and its Colombian

Analysis of rice purchase decision on rice consumer in Bandung city

Science.gov (United States)

Kusno, K.; Imannurdin, A.; Syamsiyah, N.; Djuwendah, E.

2018-03-01

This study was conducted at three kinds of purchase location which were traditional market, rice kiosk, and supermarket in Bandung City, with survey data of 108 respondents which were selected by systematic random sampling. The aim of this study is to (1) identify consumer characteristics, (2) identify which atribute is considered by consumer in buying rice, and (3) analyze the relationship between purchase decision and income class. Data were analyzed by descriptive analysis and Chi Square test. The results showed most consumers in the traditional market were middle-educated and lower middle-income, at the rice kiosk, the consumer were generally middle-educated and middle-income, and in the supermarkets, the majority were high-educated and upper middle-income consumers. “Kepulenan” be the first priority of most consumers, but for the lower-middle class, the main priority was price. Thus, in case of scarcity and rice price increase, the government should immediately arrange market operations which targeting to lower-middle class consumers. There was a significant relationship between (1) the quality of rice consumed, (2) the frequency of rice purchase per month, and (3) attitudes toward rice price increase; each with the income class. Although the price of rice increase, consumers of middle and upper-middle were remain loyal to the quality of rice they consumed. This indicates rice market in Bandung city is an ideal market for premium rice so that traders and producers are expected to maintain the quality of rice, such as keep using superior seeds and applying good cultivation based on Good Agricultural Practice (GAP) rules.

Nitrogen Dynamic Study on Rice Mutant Lines Using 15N Isotope Techniques

International Nuclear Information System (INIS)

Ahmad Nazrul Abd Wahid; Shyful Azizi Abdul Rahman; Abdul Rahim Harun

2015-01-01

Malaysian Nuclear Agency in collaboration with UPM and MARDI has produced two types of rice mutant lines of MR219, viz. MR219-4 and MR219-9 developed under rice radiation mutagenenesis programme for adaptability to aerobic conditions. Aerobic cultivating is rice cultivation system on well drained soil and using minimal water input. At Malaysian Nuclear Agency, a nitrogen fertilization study in aerobic condition for the rice mutant lines was carried out in the shade house and field. The study is intended to examine and assess the dynamics of nitrogen by rice mutant lines through the different soil water management and nitrogen levels. Direct 15 N isotopic tracer method was used in this study, whereby the 15 N labeled urea fertilizer was utilized as a tracer for nitrogen nutrient uptake by the test crops. This paper is intended to highlight the progress that has been made in the study of the nitrogen dynamics on MR219-4 and MR219-9 rice mutant lines. (author)

Heavy metal toxicity in rice and soybean plants cultivated in contaminated soil

Directory of Open Access Journals (Sweden)

Maria Lígia de Souza Silva

2014-04-01

Full Text Available Heavy metals can accumulate in soil and cause phytotoxicity in plants with some specific symptoms. The present study evaluated the specific symptoms on rice and soybeans plants caused by excess of heavy metals in soil. Rice and soybean were grown in pots containing soil with different levels of heavy metals. A completely randomized design was used, with four replications, using two crop species and seven sample soils with different contamination levels. Rice and soybean exhibited different responses to the high concentrations of heavy metals in the soil. Rice plants accumulated higher Cu, Mn, Pb and Zn concentrations and were more sensitive to high concentrations of these elements in the soil, absorbing them more easily compared to the soybean plants. However, high available Zn concentrations in the soil caused phytotoxicity symptoms in rice and soybean, mainly chlorosis and inhibited plant growth. Further, high Zn concentrations in the soil reduced the Fe concentration in the shoots of soybean and rice plants to levels considered deficient.

Cytoplasmic-genetic male sterility gene provides direct evidence for some hybrid rice recently evolving into weedy rice

Science.gov (United States)

Zhang, Jingxu; Lu, Zuomei; Dai, Weimin; Song, Xiaoling; Peng, Yufa; Valverde, Bernal E.; Qiang, Sheng

2015-01-01

Weedy rice infests paddy fields worldwide at an alarmingly increasing rate. There is substantial evidence indicating that many weedy rice forms originated from or are closely related to cultivated rice. There is suspicion that the outbreak of weedy rice in China may be related to widely grown hybrid rice due to its heterosis and the diversity of its progeny, but this notion remains unsupported by direct evidence. We screened weedy rice accessions by both genetic and molecular marker tests for the cytoplasmic male sterility (CMS) genes (Wild abortive, WA, and Boro type, BT) most widely used in the production of indica and japonica three-line hybrid rice as a diagnostic trait of direct parenthood. Sixteen weedy rice accessions of the 358 tested (4.5%) contained the CMS-WA gene; none contained the CMS-BT gene. These 16 accessions represent weedy rices recently evolved from maternal hybrid rice derivatives, given the primarily maternal inheritance of this trait. Our results provide key direct evidence that hybrid rice can be involved in the evolution of some weedy rice accessions, but is not a primary factor in the recent outbreak of weedy rice in China. PMID:26012494

Cytoplasmic-genetic male sterility gene provides direct evidence for some hybrid rice recently evolving into weedy rice.

Science.gov (United States)

Zhang, Jingxu; Lu, Zuomei; Dai, Weimin; Song, Xiaoling; Peng, Yufa; Valverde, Bernal E; Qiang, Sheng

2015-05-27

Weedy rice infests paddy fields worldwide at an alarmingly increasing rate. There is substantial evidence indicating that many weedy rice forms originated from or are closely related to cultivated rice. There is suspicion that the outbreak of weedy rice in China may be related to widely grown hybrid rice due to its heterosis and the diversity of its progeny, but this notion remains unsupported by direct evidence. We screened weedy rice accessions by both genetic and molecular marker tests for the cytoplasmic male sterility (CMS) genes (Wild abortive, WA, and Boro type, BT) most widely used in the production of indica and japonica three-line hybrid rice as a diagnostic trait of direct parenthood. Sixteen weedy rice accessions of the 358 tested (4.5%) contained the CMS-WA gene; none contained the CMS-BT gene. These 16 accessions represent weedy rices recently evolved from maternal hybrid rice derivatives, given the primarily maternal inheritance of this trait. Our results provide key direct evidence that hybrid rice can be involved in the evolution of some weedy rice accessions, but is not a primary factor in the recent outbreak of weedy rice in China.

Chemical, Sensorial and Rheological Properties of a New Organic Rice Bran Beverage

OpenAIRE

Gerson Luis FACCIN; Letícia Adélia MIOTTO; Leila do Nascimento VIEIRA; Pedro Luiz Manique BARRETO; Edna Regina AMANTE

2009-01-01

Rice bran is a solid residue from rice polishing that is used in animal nutrition and rice oil production. Cultivation conditions with agro-toxics, lipids instability, and tendency for mycotoxin contamination restrict its application in human nutrition. Therefore, organic agriculture is an alternative to use the properties of rice bran. Rice bran beverage is a new cereal product from organic rice. This work presents the preliminary results of the chemical and rheological studies of a bath pas...

Evaluation of Heavy Metals Contamination from Environment to Food Matrix by TXRF: The Case of Rice and Rice Husk

Directory of Open Access Journals (Sweden)

Fabjola Bilo

2015-01-01

Full Text Available This paper is devoted to the chemical analysis of contaminated soils of India and the rice grown in the same area. Total reflection X-ray fluorescence spectroscopy is a well-established technique for elemental chemical analysis of environmental samples, and it can be a useful tool to assess food safety. Metals uptake in rice crop grown in soils from different areas was studied. In this work soil, rice husk and rice samples were analyzed after complete solubilization of samples by microwave acid digestion. Heavy metals concentration detected in rice samples decreases in the following order: Mn > Zn > Cu > Ni > Pb > Cr. The metal content in rice husk was higher than in rice. This study suggests, for the first time, a possible role of heavy metals filter played by rice husk. The knowledge of metals sequestration capability of rice husk may promote some new management practices for rice cultivation to preserve it from pollution.

Influence of Climate Factors on Rice Yields in Cambodia

Directory of Open Access Journals (Sweden)

Dek Vimean Pheakdey

2017-12-01

Full Text Available Temperature and precipitation have been known as the key determinant factors to affect rice production in climate change. In this study, the relationship between climate variables and rice yields during 1993–2012 in Cambodia was analyzed and evaluated. The Ordinary Least Squares analysis was applied to examine the relationship of three climate variables (TCV including maximum temperature, minimum temperature and rainfall against seasonal rice yields. By this period, a remarkable increasing trend of annual temperature was observed whilst rainfall was not significantly changed. The TCV explains approximately 63% and 56% of the variability of rice yields in wet and dry seasons, respectively. It is found that in Cambodia, non-climate factors such as fertilizers, water, cultivars, and soil fertility cause 40% variation to rice yields, whereas the remaining 60% can be influenced by climate variability. The levels of temperature difference (LTD between maximum and minimum temperatures of the wet season (WS and dry season (DS were 7.0 and 8.6 oC, respectively. The lower value of LTD may cause the reduction of rice in WS (2.2 tons/ha as compared to that of DS (3.0 tons/ha. Rice yield has increased 50.5% and 33.8% in DS and WS, respectively, may due to the improvement of rice cultivation practices in Cambodia such as the better use of fertilizers, pest and weed control, and irrigation, and more effective rice cultivated protocol, as the increased trend of temperature may detrimentally affect rice yield. The breeding of heat and drought tolerance rice varieties and development of irrigation system are effective to reduce the negative influence from climate change to rice production in Cambodia.

Population genomics identifies the origin and signatures of selection of Korean weedy rice

OpenAIRE

He, Qiang; Kim, Kyu?Won; Park, Yong?Jin

2016-01-01

Summary Weedy rice is the same biological species as cultivated rice (Oryza sativa); it is also a noxious weed infesting rice fields worldwide. Its formation and population?selective or ?adaptive signatures are poorly understood. In this study, we investigated the phylogenetics, population structure and signatures of selection of Korean weedy rice by determining the whole genomes of 30 weedy rice, 30 landrace rice and ten wild rice samples. The phylogenetic tree and results of ancestry infere...

Life cycle GHG evaluation of organic rice production in northern Thailand.

Science.gov (United States)

Yodkhum, Sanwasan; Gheewala, Shabbir H; Sampattagul, Sate

2017-07-01

Greenhouse gas (GHG) emission is one of the serious international environmental issues that can lead to severe damages such as climate change, sea level rise, emerging disease and many other impacts. Rice cultivation is associated with emissions of potent GHGs such as methane and nitrous oxide. Thai rice has been massively exported worldwide however the markets are becoming more competitive than ever since the green market has been hugely promoted. In order to maintain the same level or enhance of competitiveness, Thai rice needs to be considered for environmentally conscious products to meet the international environmental standards. Therefore, it is necessary to evaluate the greenhouse gas emissions throughout the life cycle of rice production in order to identify the major emission sources and possible reduction strategies. In this research, the rice variety considered is Khao Dawk Mali 105 (KDML 105) cultivated by organic practices. The data sources were Don-Chiang Organic Agricultural Cooperative (DCOAC), Mae-teang district, Chiang Mai province, Thailand and the Office of Agricultural Economics (OAE) of Thailand with onsite records and interviews of farmers in 2013. The GHG emissions were calculated from cradle-to-farm by using the Life Cycle Assessment (LCA) approach and the 2006 IPCC Guideline for National Greenhouse Gas Inventories. The functional unit is defined as 1 kg of paddy rice at farm gate. Results showed that the total GHG emissions of organic rice production were 0.58 kg CO 2 -eq per kg of paddy rice. The major source of GHG emission was from the field emissions accounting for 0.48 kg CO 2 -eq per kg of paddy rice, about 83% of total, followed by land preparation, harvesting and other stages (planting, cultivation and transport of raw materials) were 9, 5 and 3% of total, respectively. The comparative results clearly showed that the GHG emissions of organic paddy rice were considerably lower than conventional rice production due to the

Behavior of Foliares Applications of Humus Mixed with the NPK in Rice Cultivation (Oryza Sativa L..

Directory of Open Access Journals (Sweden)

Rolando Saborit Reyes

2013-12-01

Full Text Available Taking into consideration the observation of one green yellowsh clorosis in the plantations of rice, after the cold campaings and the disminishing of the agricultural efficiency of the cerial in areas of Saint Elena Land belonging to the fortified cooperatove of credits and service (FCCS Camilo Cienfuegos in Las Nuevas, La Sierpe, Province of Sancti – Spiritus, were done foliars aplications with mineral fertilizing as, N.P.K to different doses and moments of applications, in order to obtain alternative of nutrition for the cultivation, the work was done on a green yellowish ferralitic ground since 2009 to 2011, using LP-5 cultivation doing the sowing by the method of transplantation, fertilization. It was done mixing 49L. ha-¹ of liquid warm humus with 0.35 Kg. ha-¹ of nitrogen, phosphorus and potassium. The results shown that the use of the foliar fertilization with liquid worm humus mixed with the N.P.K minerals, increased the efficiency, obtaining 5.3t. ha-¹ as an average in different variants used. The economic analysis showed that the treatment with 40% of nitrogen was reduced with seven foliars applications, it was highest to the witness N.P.K in 1.5t . ha-¹ of the grain obtaining a relative benefit of 4264.55 pesos by hectarea.

Deciphering the role of a miRNA in rice domestication

Directory of Open Access Journals (Sweden)

Swetha Chenna

2017-10-01

Full Text Available MicroRNAs (miRNAs are a class of 21 nt non-coding small RNAs (sRNAs produced from endogenously expressed MIR genes. miRNAs are mostly involved in development and disease resistance. We are interested in identifying key miRNAs that are differentially expressed among wild and cultivated rice species. Analysis of sRNA datasets from two wild species (O. nivara and O. rufipogon and one cultivated species of rice (O. sativa var. indica Pusa Basmati-1, revealed a surprisingly higher abundance of small RNAs originating from Chromosome 2 in wild rice species. This locus codes for a novel 22 nt miRNA. This novel miRNA was found to be highly abundant in flag leaf of wild species, a tissue that usually provides 70% of energy required for grain filling. This miRNA targets a group of proteins (Os03g0273200, Os01g0827300, Os01g0850700, Os11g0708100 and Os01g0842500 which are involved in secondary metabolite production, although a functional significance of this interaction has not been understood. The expression of these targets also differs across the species. Typical of 22 nt miRNAs, the identified miRNA also triggers a secondary cascade silencing by producing small interfering RNAs (siRNAs from target mRNAs in O. nivara. These secondary siRNAs are observed only among wild rice species but not in cultivated rice. Currently we are using a range of genetic, biochemical and molecular techniques to understand role of this novel miRNA in domestication of rice.

Genetic control of a transition from black to straw-white seed hull in rice domestication.

Science.gov (United States)

Zhu, Bo-Feng; Si, Lizhen; Wang, Zixuan; Zhou, Yan; Zhu, Jinjie; Shangguan, Yingying; Lu, Danfeng; Fan, Danlin; Li, Canyang; Lin, Hongxuan; Qian, Qian; Sang, Tao; Zhou, Bo; Minobe, Yuzo; Han, Bin

2011-03-01

The genetic mechanism involved in a transition from the black-colored seed hull of the ancestral wild rice (Oryza rufipogon and Oryza nivara) to the straw-white seed hull of cultivated rice (Oryza sativa) during grain ripening remains unknown. We report that the black hull of O. rufipogon was controlled by the Black hull4 (Bh4) gene, which was fine-mapped to an 8.8-kb region on rice chromosome 4 using a cross between O. rufipogon W1943 (black hull) and O. sativa indica cv Guangluai 4 (straw-white hull). Bh4 encodes an amino acid transporter. A 22-bp deletion within exon 3 of the bh4 variant disrupted the Bh4 function, leading to the straw-white hull in cultivated rice. Transgenic study indicated that Bh4 could restore the black pigment on hulls in cv Guangluai 4 and Kasalath. Bh4 sequence alignment of all taxa with the outgroup Oryza barthii showed that the wild rice maintained comparable levels of nucleotide diversity that were about 70 times higher than those in the cultivated rice. The results from the maximum likelihood Hudson-Kreitman-Aguade test suggested that the significant reduction in nucleotide diversity in rice cultivars could be caused by artificial selection. We propose that the straw-white hull was selected as an important visual phenotype of nonshattered grains during rice domestication.

Suitability assessment and mapping of Oyo State, Nigeria, for rice cultivation using GIS

Science.gov (United States)

Ayoade, Modupe Alake

2017-08-01

Rice is one of the most preferred food crops in Nigeria. However, local rice production has declined with the oil boom of the 1970s causing demand to outstrip supply. Rice production can be increased through the integration of Geographic Information Systems (GIS) and crop-land suitability analysis and mapping. Based on the key predictor variables that determine rice yield mentioned in relevant literature, data on rainfall, temperature, relative humidity, slope, and soil of Oyo state were obtained. To develop rice suitability maps for the state, two MCE-GIS techniques, namely the Overlay approach and weighted linear combination (WLC), using fuzzy AHP were used and compared. A Boolean land use map derived from a landsat imagery was used in masking out areas currently unavailable for rice production. Both suitability maps were classified into four categories of very suitable, suitable, moderate, and fairly moderate. Although the maps differ slightly, the overlay and WLC (AHP) approach found most parts of Oyo state (51.79 and 82.9 % respectively) to be moderately suitable for rice production. However, in areas like Eruwa, Oyo, and Shaki, rainfall amount received needs to be supplemented by irrigation for increased rice yield.

Geographic authentication of Asian rice (Oryza sativa L.) using multi-elemental and stable isotopic data combined with multivariate analysis.

Science.gov (United States)

Chung, Ill-Min; Kim, Jae-Kwang; Lee, Kyoung-Jin; Park, Sung-Kyu; Lee, Ji-Hee; Son, Na-Young; Jin, Yong-Ik; Kim, Seung-Hyun

2018-02-01

Rice (Oryza sativa L.) is the world's third largest food crop after wheat and corn. Geographic authentication of rice has recently emerged asan important issue for enhancing human health via food safety and quality assurance. Here, we aimed to discriminate rice of six Asian countries through geographic authentication using combinations of elemental/isotopic composition analysis and chemometric techniques. Principal components analysis could distinguish samples cultivated from most countries, except for those cultivated in the Philippines and Japan. Furthermore, orthogonal projection to latent structure-discriminant analysis provided clear discrimination between rice cultivated in Korea and other countries. The major common variables responsible for differentiation in these models were δ 34 S, Mn, and Mg. Our findings contribute to understanding the variations of elemental and isotopic compositions in rice depending on geographic origins, and offer valuable insight into the control of fraudulent labeling regarding the geographic origins of rice traded among Asian countries. Copyright © 2017 Elsevier Ltd. All rights reserved.

Improving Former Shifted Cultivation Land Using Wetland Cultivation in Kapuas District, Central Kalimantan

Directory of Open Access Journals (Sweden)

Wahyudi Wahyudi

2016-06-01

Full Text Available Degraded forest area in Kalimantan could be caused by shifted cultivation activity that be conducted by local peoples in the surrounding forest areas. Efforts to improve the former shifted cultivation area (non productive land is developing the settled cultivation by use of irrigation system, better paddy seed, land processing, fertilizing, spraying pesticide, weeding, and better acces to the market.  Local peoples, especially in Kalimantan, has been depended their food on the shifted cultivation pattern since the long time ago.  This tradition could cause forest damage, forest fire, forest degradation, deforestation, and lose out of children education because they were following shifted cultivation activity although itsspace is very far from their home.  This research was aimed to improve former shifted cultivation lands using wetland cultivation in order to improve land productivity and to support food securityin the local community. This research was administratively located in Tanjung Rendan Village, Kapuas Hulu Sub-Ddistrict, Kapuas District, Central Kalimantan Province, Indonesia.  Data of rice yield from settled cultivation and shifted cultivation were got from 15 households that was taking by random at 2010 to 2011. Homogeneity test, analysis of variants, and least significant different (LSD test using SPSS 15.0 for Windows. Result of this research showed that     paddy yield at settled cultivation was significantly differentand better than shifted cultivation at 0.05 level. LSD test also indicated that all paddy yields from settled cultivation were significantly different compare to shifted cultivation at the 0.05 level.  The community in Tanjung Rendan Villages preferred settled cultivation than shifted cultivation, especially due to higher paddy production. Profit for settled cultivation was IDR10.95 million ha-1, meanwhile profit for shifted cultivation was just IDR 2.81 million ha-1 only.  Settled cultivation pattern could

Rice yield in response to climate trends and drought index in the Mun River Basin, Thailand

NARCIS (Netherlands)

Prabnakom, S.; Maskey, S.; Suryadi, F.X.; Fraiture, de C.M.S.

2018-01-01

Rice yields in Thailand are among the lowest in Asia. In northeast Thailand where about 90% of rice cultivation is rain-fed, climate variability and change affect rice yields. Understanding climate characteristics and their impacts on the rice yield is important for establishing proper adaptation

Identification of heterotic loci associated with yield-related traits in Chinese common wild rice (Oryza rufipogon Griff.).

Science.gov (United States)

Luo, Xiaojin; Wu, Shuang; Tian, Feng; Xin, Xiaoyun; Zha, Xiaojun; Dong, Xianxin; Fu, Yongcai; Wang, Xiangkun; Yang, Jinshui; Sun, Chuanqing

2011-07-01

Many rice breeding programs have currently reached yield plateaus as a result of limited genetic variability in parental strains. Dongxiang common wild rice (Oryza rufipogon Griff.) is the progenitor of cultivated rice (Oryza sativa L.) and serves as an important gene pool for the genetic improvement of rice cultivars. In this study, heterotic loci (HLs) associated with six yield-related traits were identified in wild and cultivated rice and investigated using a set of 265 introgression lines (ILs) of O. rufipogon Griff. in the background of the Indica high-yielding cultivar Guichao 2 (O. sativa L.). Forty-two HLs were detected by a single point analysis of mid-parent heterosis values from test cross F(1) offspring, and 30 (71.5%) of these HLs showed significantly positive effects, consistent with the superiority shown by the F(1) test cross population in the six yield-related traits under study. Genetic mapping of hsp11, a locus responsible for the number of spikelets per panicle, confirmed the utility of these HLs. The results indicate that favorable HLs capable of improving agronomic traits are available. The identification of HLs between wild rice and cultivated rice could lead to a new strategy for the application of heterosis in rice breeding. Copyright © 2011. Published by Elsevier Ireland Ltd.

Diseases of wild rice

Science.gov (United States)

Diseases are much more pronounced in cultivated wild rice than in natural stands, most likely due to the narrower genetic base of the populations, plant stress due to high planting density and floodwater removal prior to harvest, and high relative humidity in the plant canopy. Yield losses occur as ...

Rice production with minimal irrigation and no nitrogen fertilizer by intensive use of treated municipal wastewater.

Science.gov (United States)

Muramatsu, Ayumi; Watanabe, Toru; Sasaki, Atsushi; Ito, Hiroaki; Kajihara, Akihiko

2014-01-01

We designed a new cultivation system of rice with circulated irrigation to remove nitrogen from treated municipal wastewater effectively and assessed the possibility of nitrogen removal in the new system without any adverse effects on rice production through bench-scale experiments through two seasons. Overgrowth of the rice plant, which can lead to lodging and tasteless rice, was found in the first season probably because nitrogen supply based on standard practice in normal paddy fields was too much in the closed irrigation system. In the second season, therefore, the amount of treated wastewater initially applied to the system was reduced but this resulted in a considerably decreased yield. On the other hand, the taste of the rice was significantly improved. The two-season experiments revealed that the new system enabled rice production with minimal irrigation (approximately 50% on the yield base compared to normal paddy fields) and no nitrogen fertilizer. The system also achieved >95% removal of nitrogen from the treated wastewater used for circulated irrigation. The accumulation of harmful metals in the rice was not observed after one season of cultivation in the new system. The accumulation after cultivation using the same soil repeatedly for a longer time should be examined by further studies.

有机水稻的种植技术研究%Research of Organic rice cultivation technology

Institute of Scientific and Technical Information of China (English)

雷燕铭

2013-01-01

　　近年来，随着我国国民经济的发展，国民对生态环境问题普遍关注，对食品安全和无公害要求进一步提高。在此基础上，安全、清洁、无污染的有机农业逐渐兴起，成为种植业的发展热点。文章以有机水稻的种植为切入点，结合笔者自身工作经验和福建省的探索实例，介绍了有机农业与有机水稻技术，从有机水稻的种植条件、土肥管理、育苗管理、秧田管理、病虫害防治等方面，浅谈了有机水稻的种植技术。%In recent years, with the development of China's national economy,people pay more attention on issues of the environment and they have higher requirements about food safety and pollution-free food. On this basis, safe, clean, non-polluting organic agriculture is gradually emerging as a growing industry . The articles analyses organic rice cultiva-tion as the starting point,according to the author's own work experience and exploring examples of Fujian Province, the ar-ticle introduces the technology of organic agriculture and organic rice and analyses organic rice planting techniques from aspects of growing conditions and soil and fertilizer management and nursery management and seedling management and pest control, etc.

Endophytic Colonization and In Planta Nitrogen Fixation by a Herbaspirillum sp. Isolated from Wild Rice Species

Science.gov (United States)

Elbeltagy, Adel; Nishioka, Kiyo; Sato, Tadashi; Suzuki, Hisa; Ye, Bin; Hamada, Toru; Isawa, Tsuyoshi; Mitsui, Hisayuki; Minamisawa, Kiwamu

2001-01-01

Nitrogen-fixing bacteria were isolated from the stems of wild and cultivated rice on a modified Rennie medium. Based on 16S ribosomal DNA (rDNA) sequences, the diazotrophic isolates were phylogenetically close to four genera: Herbaspirillum, Ideonella, Enterobacter, and Azospirillum. Phenotypic properties and signature sequences of 16S rDNA indicated that three isolates (B65, B501, and B512) belong to the Herbaspirillum genus. To examine whether Herbaspirillum sp. strain B501 isolated from wild rice, Oryza officinalis, endophytically colonizes rice plants, the gfp gene encoding green fluorescent protein (GFP) was introduced into the bacteria. Observations by fluorescence stereomicroscopy showed that the GFP-tagged bacteria colonized shoots and seeds of aseptically grown seedlings of the original wild rice after inoculation of the seeds. Conversely, for cultivated rice Oryza sativa, no GFP fluorescence was observed for shoots and only weak signals were observed for seeds. Observations by fluorescence and electron microscopy revealed that Herbaspirillum sp. strain B501 colonized mainly intercellular spaces in the leaves of wild rice. Colony counts of surface-sterilized rice seedlings inoculated with the GFP-tagged bacteria indicated significantly more bacterial populations inside the original wild rice than in cultivated rice varieties. Moreover, after bacterial inoculation, in planta nitrogen fixation in young seedlings of wild rice, O. officinalis, was detected by the acetylene reduction and 15N2 gas incorporation assays. Therefore, we conclude that Herbaspirillum sp. strain B501 is a diazotrophic endophyte compatible with wild rice, particularly O. officinalis. PMID:11679357

The yield and quality of black rice varieties in different altitude

Science.gov (United States)

Purwanto, E.; Hidayati, W.; Nandariyah

2018-03-01

This study aims to determine the optimal environmental conditions and corresponding black rice varieties in order to produce high production and optimum quality rice. The study using nested design, first was location (2 levels: the highlands and lowland), second was varieties (3 levels: Cempo Ireng, IPB, and Gagak) the study was conducted from November 2015 until May 2016 in Karanglo and Gutanon village, Karanganyar. Anthocyanin analysis conducted in laboratory of Nutrition and Food, Faculty of Agriculture, Sebelas Maret University. Data were analyzed using analysis of variance and significant difference continued with DMRT (Duncan Multiple Range Test) level of 5%. Results showed that cultivation in highlands and use of diverse varieties showed different quantity of rice that can be seen on panicle length, and weight of grain crops. Improved quality of results showed same things, anthocyanin content and iron increased on black rice which cultivated in highlands.

SUSTAINING PADDY SELF-SUFFICIENCY AND LAND DEMANDS IN SABAH, MALAYSIA: A STRUCTURAL PADDY AND RICE ECONOMETRIC MODEL ANALYSIS

Directory of Open Access Journals (Sweden)

Wong Kelly_Kai_Seng

2017-01-01

Full Text Available The objective of this study is to construct an econometric commodity model in order to forecast the long term rice production performance of the state of Sabah, Malaysia. The baseline projection shows that the Sabah rice self-sufficiency is estimated to achieve approximately38% in the next 10 years due to the scarcity of the suitable land bank allocate for paddy cultivation. In order to achieve 60% of targeted rice self-sufficiency level (SSL, the size of land for paddy cultivation must be increased in Sabah. Based on the scenario simulation projection result, the expansion of paddy cultivation area will contribute a positively to the industrial rice production and consequently achieving the expected 60% of SSL by the end of 2024. In a nutshell, the state government of Sabah possess state autonomy on the land management, thus the state government plays a significant key role on promoting the local rice self-sufficiency level in the long-term period

Characterization of N2-fixing plant growth promoting endophytic and epiphytic bacterial community of Indian cultivated and wild rice (Oryza spp.) genotypes.

Science.gov (United States)

Banik, Avishek; Mukhopadhaya, Subhra Kanti; Dangar, Tushar Kanti

2016-03-01

The diversity of endophytic and epiphytic diazotrophs in different parts of rice plants has specificity to the niche (i.e. leaf, stem and root) of different genotypes and nutrient availability of the organ. Inoculation of the indigenous, polyvalent diazotrophs can facilitate and sustain production of non-leguminous crops like rice. Therefore, N2-fixing plant growth promoting bacteria (PGPB) were isolated from different parts of three Indian cultivated [Oryza sativa L. var. Sabita (semi deep/deep water)/Swarna (rain fed shallow lowland)/Swarna-Sub1(submergence tolerant)] and a wild (O. eichingeri) rice genotypes which respond differentially to nitrogenous fertilizers. Thirty-five isolates from four rice genotypes were categorized based on acetylene reduction assay on nitrogenase activity, biochemical tests, BIOLOG and 16S rRNA gene sequencing. The bacteria produced 9.36-155.83 nmole C2H4 mg(-1) dry bacteria h(-1) and among them nitrogenase activity of 11 potent isolates was complemented by nifH-sequence analysis. Phylogenetic analysis based on 16S rDNA sequencing divided them into five groups (shared 95-100 % sequence homology with type strains) belonging to five classes-alpha (Ancylobacter, Azorhizobium, Azospirillum, Rhizobium, Bradyrhizobium, Sinorhizobium, Novosphingobium, spp.), beta (Burkholderia sp.), gamma (Acinetobacter, Aeromonas, Azotobacter, Enterobacter, Klebsiella, Pantoea, Pseudomonas, Stenotrophomonas spp.) Proteobacteria, Bacilli (Bacillus, Paenibacillus spp.) and Actinobacteria (Microbacterium sp.). Besides, all bacterial strains possessed the intrinsic PGP traits of like indole (0.44-7.4 µg ml(-1)), ammonia (0.18-6 mmol ml(-1)), nitrite (0.01-3.4 mol ml(-1)), and siderophore (from 0.16-0.57 μmol ml(-1)) production. Inoculation of rice (cv. Swarna) seedlings with selected isolates had a positive impact on plant growth parameters like shoot and root elongation which was correlated with in vitro PGP attributes. The results indicated that the

On-farm management practices against rice root weevil (Echinocnemus oryzae Marshall)

OpenAIRE

Rakesh Pandey; Ajit Kumar Chaturvedi; Rudal Prasad Chaudhary; Rajendra Prasad

2017-01-01

Rice is the staple food of over half the world's population and occupies almost one-fifth of the global cropland under cereals. The rice root weevil, Echinocnemus oryzae Marshall, (Coleoptera: Curculionidae) has posed a problem in paddy cultivation areas in India. The damage by this root weevil results in a significant decrease in root and shoot biomass and ultimately the yield of rice plants. Studies were conducted to test the effective management practices of rice root weevil using a seedli...

Effect of acetic acid on rice seeds coated with rice husk ash

Directory of Open Access Journals (Sweden)

Lizandro Ciciliano Tavares

2013-06-01

Full Text Available Flooded rice cultivation promotes anaerobic conditions, favoring the formation of short chain organic acids such as acetic acid, which may be toxic to the crop. The objective of this study was to evaluate the effect of acetic acid on rice seeds coated with rice husk ash. The experiment was arranged in a 2 x 5 x 5 factorial randomized design, with two cultivars (IRGA 424 and BRS Querência, five doses of coating material (0, 2, 3,4 e 5 g kg-1 seed and five concentrations of acetic acid (0, 3, 6, 9 and 12 mM, with 4 replications, totaling 50 treatments. The variables first count of germination, germination, shoot and root length, dry weight of shoots and roots were recorded. The results showed that coating rice seeds with rice husk ash up to 5 g kg-1 seed does not influence the performance of rice seeds of cultivars IRGA 424 and BRS Querência when exposed to concentrations of 12 mM acetic acid. The presence of acetic acid in the substrates used for seed germination reduced the vigor and viability of seeds of cultivars IRGA 424 and BRS Querência, as well as seedling development, affecting mainly the roots of BRS Querência.

RICD: A rice indica cDNA database resource for rice functional genomics

Directory of Open Access Journals (Sweden)

Zhang Qifa

2008-11-01

Full Text Available Abstract Background The Oryza sativa L. indica subspecies is the most widely cultivated rice. During the last few years, we have collected over 20,000 putative full-length cDNAs and over 40,000 ESTs isolated from various cDNA libraries of two indica varieties Guangluai 4 and Minghui 63. A database of the rice indica cDNAs was therefore built to provide a comprehensive web data source for searching and retrieving the indica cDNA clones. Results Rice Indica cDNA Database (RICD is an online MySQL-PHP driven database with a user-friendly web interface. It allows investigators to query the cDNA clones by keyword, genome position, nucleotide or protein sequence, and putative function. It also provides a series of information, including sequences, protein domain annotations, similarity search results, SNPs and InDels information, and hyperlinks to gene annotation in both The Rice Annotation Project Database (RAP-DB and The TIGR Rice Genome Annotation Resource, expression atlas in RiceGE and variation report in Gramene of each cDNA. Conclusion The online rice indica cDNA database provides cDNA resource with comprehensive information to researchers for functional analysis of indica subspecies and for comparative genomics. The RICD database is available through our website http://www.ncgr.ac.cn/ricd.

Phylogeography of Asian wild rice, Oryza rufipogon: a genome-wide view.

Science.gov (United States)

Huang, Pu; Molina, Jeanmaire; Flowers, Jonathan M; Rubinstein, Samara; Jackson, Scott A; Purugganan, Michael D; Schaal, Barbara A

2012-09-01

Asian wild rice (Oryza rufipogon) that ranges widely across the eastern and southern part of Asia is recognized as the direct ancestor of cultivated Asian rice (O. sativa). Studies of the geographic structure of O. rufipogon, based on chloroplast and low-copy nuclear markers, reveal a possible phylogeographic signal of subdivision in O. rufipogon. However, this signal of geographic differentiation is not consistently observed among different markers and studies, with often conflicting results. To more precisely characterize the phylogeography of O. rufipogon populations, a genome-wide survey of unlinked markers, intensively sampled from across the entire range of O. rufipogon is critical. In this study, we surveyed sequence variation at 42 genome-wide sequence tagged sites (STS) in 108 O. rufipogon accessions from throughout the native range of the species. Using Bayesian clustering, principal component analysis and amova, we conclude that there are two genetically distinct O. rufipogon groups, Ruf-I and Ruf-II. The two groups exhibit a clinal variation pattern generally from north-east to south-west. Different from many earlier studies, Ruf-I, which is found mainly in China and the Indochinese Peninsula, shows genetic similarity with one major cultivated rice variety, O. satvia indica, whereas Ruf-II, mainly from South Asia and the Indochinese Peninsula, is not found to be closely related to cultivated rice varieties. The other major cultivated rice variety, O. sativa japonica, is not found to be similar to either O. rufipogon groups. Our results support the hypothesis of a single origin of the domesticated O. sativa in China. The possible role of palaeoclimate, introgression and migration-drift balance in creating this clinal variation pattern is also discussed. © 2012 Blackwell Publishing Ltd.

Cutaneous Mycoses among Rice Farmers in Anambra State, Nigeria

OpenAIRE

Ekwealor, Chito Clare; Oyeka, Christie Amechi

2013-01-01

Rice grain is one of the world's most important food crops, and its cultivation is a major occupation in Anambra State, Nigeria. These rice farmers are exposed to various agents that predispose them to cutaneous mycoses. The aim of this work was to screen rice farmers for lesions suggestive of cutaneous mycoses and to isolate and identify fungal agents associated with the infection. This survey was carried out between November 2009 and June 2011 in Anambra State, Nigeria. Clinical samples col...

Little white lies: pericarp color provides insights into the origins and evolution of Southeast Asian weedy rice

Science.gov (United States)

Weedy rice is a conspecific form of cultivated rice (Oryza sativa L.) that infests rice fields and results in severe crop losses. Weed strains in different world regions appear to have originated multiple times from different domesticated and/or wild rice progenitors. In the case of Malaysian weedy ...

Application of Azolla and intermittent irrigation to improve the productivity and nutrient contents of local black rice variety

Science.gov (United States)

Sulandjari; Yunindanova, M. B.

2018-03-01

Black rice is a local rice variety that contains a high level of anthocyanin pigment. Anthocyanin has been reported to be very effective in reducing cholesterol levels as well as cancer cell invasion. One of the main problems in rice cultivation is lack of water. System of Rice Intensification (SRI) has shown to be able to increase rice productivity by increasing the number of tillers. This system is known as a water-efficient cultivation. Other rice cultivation barrier is related to the use of nitrogen fertilizer. One of replacement of nitrogen fertilizer is by adding azolla. The objective of this research was identifying growth and yield of organic black rice with intermittent irrigation and application of azolla. The plant material used was black rice Cempo variety from Sleman, Yogyakarta. This experiment utilized 4 dosages of azolla as the first treatment: 100 gm-2, 200 gm-2 and 400 gm-2. The second treatment was water supply consisted of continuous flooded 2 cm; flooded 2 cm every 3 days; flooded 2 cm every 6 days. The results depicted that the application of azolla was able to increase the growth of black rice. Azolla of 200 gm-2 and 400 gm-2 and intermittent 3 days to 6 days generated higher dry grain, anthocyanin and antioxidant. Azolla 200 gm-2 with intermittent irrigation 3 days could be a good combination to improve plant growth, yield and properties of local black rice.

A Built-In Mechanism to Mitigate the Spread of Insect-Resistance and Herbicide-Tolerance Transgenes into Weedy Rice Populations

Science.gov (United States)

Liu, Chengyi; Li, Jingjing; Gao, Jianhua; Shen, Zhicheng; Lu, Bao-Rong; Lin, Chaoyang

2012-01-01

Background The major challenge of cultivating genetically modified (GM) rice (Oryza sativa) at the commercial scale is to prevent the spread of transgenes from GM cultivated rice to its coexisting weedy rice (O. sativa f. spontanea). The strategic development of GM rice with a built-in control mechanism can mitigate transgene spread in weedy rice populations. Methodology/Principal Findings An RNAi cassette suppressing the expression of the bentazon detoxifying enzyme CYP81A6 was constructed into the T-DNA which contained two tightly linked transgenes expressing the Bt insecticidal protein Cry1Ab and the glyphosate tolerant 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), respectively. GM rice plants developed from this T-DNA were resistant to lepidopteran pests and tolerant to glyphosate, but sensitive to bentazon. The application of bentazon of 2000 mg/L at the rate of 40 mL/m2, which is approximately the recommended dose for the field application to control common rice weeds, killed all F2 plants containing the transgenes generated from the Crop-weed hybrids between a GM rice line (CGH-13) and two weedy rice strains (PI-63 and PI-1401). Conclusions/Significance Weedy rice plants containing transgenes from GM rice through gene flow can be selectively killed by the spray of bentazon when a non-GM rice variety is cultivated alternately in a few-year interval. The built-in control mechanism in combination of cropping management is likely to mitigate the spread of transgenes into weedy rice populations. PMID:22359609

A built-in mechanism to mitigate the spread of insect-resistance and herbicide-tolerance transgenes into weedy rice populations.

Directory of Open Access Journals (Sweden)

Chengyi Liu

Full Text Available BACKGROUND: The major challenge of cultivating genetically modified (GM rice (Oryza sativa at the commercial scale is to prevent the spread of transgenes from GM cultivated rice to its coexisting weedy rice (O. sativa f. spontanea. The strategic development of GM rice with a built-in control mechanism can mitigate transgene spread in weedy rice populations. METHODOLOGY/PRINCIPAL FINDINGS: An RNAi cassette suppressing the expression of the bentazon detoxifying enzyme CYP81A6 was constructed into the T-DNA which contained two tightly linked transgenes expressing the Bt insecticidal protein Cry1Ab and the glyphosate tolerant 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS, respectively. GM rice plants developed from this T-DNA were resistant to lepidopteran pests and tolerant to glyphosate, but sensitive to bentazon. The application of bentazon of 2000 mg/L at the rate of 40 mL/m(2, which is approximately the recommended dose for the field application to control common rice weeds, killed all F(2 plants containing the transgenes generated from the Crop-weed hybrids between a GM rice line (CGH-13 and two weedy rice strains (PI-63 and PI-1401. CONCLUSIONS/SIGNIFICANCE: Weedy rice plants containing transgenes from GM rice through gene flow can be selectively killed by the spray of bentazon when a non-GM rice variety is cultivated alternately in a few-year interval. The built-in control mechanism in combination of cropping management is likely to mitigate the spread of transgenes into weedy rice populations.

Rice agroecosystem and the maintenance of biodiversity

International Nuclear Information System (INIS)

Ahyaudin Ali

2002-01-01

Rice fields are a special type of wetland. They are shallow, constantly disturbed and experience extremes in temperature and dissolved oxygen content. They receive nutrients in the form of fertilizers during rice cultivation. Rice fields; support a variety of flora and fauna that have adapted and adjusted themselves to the extreme conditions. Since rice fields also support populations of wild fish, rice?fish integration should be done in order to optimize land use and provide supplementary income to farmers. Rice?fish farming encourages farmers to judiciously apply pesticides and herbicides in their fields thus helping to control excessive and unwarranted use of these chemicals. Rice fields also support many migratory and nonmigratory bird species and provides habitat for small mammals. Thus the rice agroecosystem helps to maintain aquatic biodiversity. The Muda rice agroecosystem consists of a troika of interconnected ecosystems. The troika consisting of reservoirs, the connecting network of canals and the rice fields; should be investigated further. This data is needed for informed decision-making concerning development and management of the system so that productivity and biodiversity can be maintained and sustained. (Author)

Effects of Mulching Mode on Canopy Physiological, Ecological Characteristics and Yield of Upland Rice

OpenAIRE

Yu-zhu ZHANG; Yang LIU; Xiang ZENG; Kai-lin CHEN; Ze-hui HUANG; Hong-ke XIE

2011-01-01

The effects of mulching mode on population physiology and ecology of rice were studied using a combination P88S/1128 as the material under three mulching cultivation modes including plastic film mulching, straw mulching and liquid film mulching, as well as bare cultivation (control). The results indicated that mulching mode had significant effects on micro-meteorological factors and individual growth of rice, as shown by an increase of relative humidity, a better internal micro-meteorological...

AN INTERACTION MODEL BETWEEN ENVIRONMENTAL FACTORS AND BLACK RICE GROWTH IN IRRIGATED ORGANIC PADDY FIELD

Directory of Open Access Journals (Sweden)

Budiman

2015-02-01

Full Text Available Black rice production in organic farming system does not meet the demand of local customers because of its low productivity. This research aimed to set an interaction model using multivariate analysis via smartPLS to identify environmental factors which simultaneously affects the growth of black rice. The growth of black rice in two irrigated organic paddy field in Malang, Indonesia was observed during planting period from November 2011 to March 2012. In each rice field, the growth was periodically recorded during planting periods: 19-29 days after planting (dap, 41-45 dap, 62-66 dap, 77-81 dap, 90-94 dap and 104-106 dap. Environmental factors such as water quantities, soil conditions, weed communities and cultivation system around the black rice population were also measured. Black rice growth was influenced simultaneously by water quantities, soil, weed communities and cultivating systems with predictive-relevance value reaching 92.83%. Based on the model, water quantities in paddy field is a key factor which directly and indirectly determined the growth and productivity of black rice.

Life cycle GHG analysis of rice straw bio-DME production and application in Thailand

International Nuclear Information System (INIS)

Silalertruksa, Thapat; Gheewala, Shabbir H.; Sagisaka, Masayuki; Yamaguchi, Katsunobu

2013-01-01

Highlights: • Life cycle GHG emissions of rice straw bio-DME production in Thailand are assessed. • Bio-DME replaces diesel in engines and supplements LPG for household application. • Rice straw bio-DME in both cases of substitution helps reduce GHG emissions. - Abstract: Thailand is one of the leading countries in rice production and export; an abundance of rice straw, therefore, is left in the field nowadays and is commonly burnt to facilitate quick planting of the next crop. The study assesses the life cycle greenhouse gas (GHG) emissions of using rice straw for bio-DME production in Thailand. The analysis is divided into two scenarios of rice straw bio-DME utilization i.e. used as automotive fuel for diesel engines and used as LPG supplement for household application. The results reveal that that utilization of rice straw for bio-DME in the two scenarios could help reduce GHG emissions by around 14–70% and 2–66%, respectively as compared to the diesel fuel and LPG substituted. In case rice straw is considered as a by-product of rice cultivation, the cultivation of rice straw will be the major source of GHG emission contributing around 50% of the total GHG emissions of rice straw bio-DME production. Several factors that can affect the GHG performance of rice straw bio-DME production are discussed along with measures to enhance GHG performance of rice straw bio-DME production and utilization

Rice production in relation to soil quality under different rice-based cropping systems

Science.gov (United States)

Tran Ba, Linh; Sleutel, Steven; Nguyen Van, Qui; Thi, Guong Vo; Le Van, Khoa; Cornelis, Wim

2016-04-01

Soil quality of shallow paddy soils may be improved by introducing upland crops and thus a more diverse crop cultivation pattern. Yet, the causal relationship between crop performance and enhanced soil traits in rice-upland crop rotations remains elusive. The objectives of this study were to (i) find correlations among soil properties under different rice-upland crop systems and link selected soil properties to rice growth and yield, (ii) present appropriate values of soil parameters for sustainable rice productivity in heavy clay soil, (iii) evaluate the effect of rotating rice with upland crops on rice yield and economic benefit in a long-term experiment. A rice-upland crop rotational field experiment in the Vietnamese Mekong delta was conducted for 10 years using a randomized complete block design with four treatments and four replications. Treatments were: (i) rice-rice-rice (control - conventional system as farmers' practice), (ii) rice-maize-rice, (iii) rice-mung bean-rice, and (iv) rice-mung bean-maize. Soil and plant sampling were performed after harvest of the rice crop at the end of the final winter-spring cropping season (i.e. year 10). Results show differences in rice growth and yield, and economic benefit as an effect of the crop rotation system. These differences were linked with changes in bulk density, soil porosity, soil aggregate stability index, soil penetration resistance, soil macro-porosity, soil organic carbon, acid hydrolysable soil C and soil nutrient elements, especially at soil depth of 20-30 cm. This is evidenced by the strong correlation (P < 0.01) between rice plant parameters, rice yield and soil properties such as bulk density, porosity, penetration resistance, soil organic carbon and Chydrolysable. It turned out that good rice root growth and rice yield corresponded to bulk density values lower than 1.3 Mg m-3, soil porosity higher than 50%, penetration resistance below 1.0 MPa, and soil organic carbon above 25 g kg-1. The optimal

Diversity and activity of nitrogen fixing archaea and bacteria associated with micro-environments of wetland rice

Science.gov (United States)

Schmidt, Hannes; Woebken, Dagmar

2017-04-01

Wetland rice is one of the world's most important crop plants. The cultivation on waterlogged paddy soils is strongly limited by nitrogen (N), which is typically supplied by industrial fertilizers that are not only costly but also exhibit hazardous effects on the environment. It has been reported that "Biological Nitrogen Fixation" through N2-fixing bacteria and archaea (diazotrophs) can alleviate the N-shortage in rice cultivation, thus carrying out an important ecosystem function. However, our understanding of the diversity and in situ N2 fixation activity of diazotrophs in flooded rice fields is still rudimentary. Moreover, knowledge on the impact of biochemical gradients established by root activity (i.e. exudation, radial oxygen loss) on the functioning of N-fixing microorganisms in paddy soil ecosystems is limited. We aimed at studying underlying processes on biologically relevant scales. Greenhouse studies were performed to identify key factors that control rice-diazotroph association and related N2 fixation activities. Paddy soils of different geographical origin were cultivated with two commercially used genotypes of wetland rice. Samples were separated into bulk soil, rhizosphere soil, rhizoplane, and roots at flowering stage of rice plant development. These samples were subjected to functional assays and various molecular biological techniques in order to analyze the associated diazotroph communities. Based on Illumina amplicon sequencing of nifH genes and transcripts, we show that the diversity and potential activity of diazotroph communities varies according to micro-environments. We will comparatively discuss the influence of (a) the soil microbial "seed bank" and (b) plant genotype in shaping the respective microbiomes and selecting for potentially active diazotrophs. Actual N2 fixation activities of soil-genotype combinations and micro-environments will be shown on the basis of incubation assays using 15N2-containing atmospheres. Areas of potential

Letter to the editor: Rice: location is vital in crop management

NARCIS (Netherlands)

Hengsdijk, H.; Bindraban, P.S.

2004-01-01

Your News Feature about rice cultivation, "Feast or famine?" (Nature 428, 360–361; 2004), is a classic example of how the debate on a potentially interesting technique can be blurred by its opponents and proponents. In this case, proponents of the System of Rice Intensification (SRI) are reported to

All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza.

Science.gov (United States)

Huang, Zhongyun; Young, Nelson D; Reagon, Michael; Hyma, Katie E; Olsen, Kenneth M; Jia, Yulin; Caicedo, Ana L

2017-06-01

Weedy rice (Oryza spp.), a weedy relative of cultivated rice (O. sativa), infests and persists in cultivated rice fields worldwide. Many weedy rice populations have evolved similar adaptive traits, considered part of the 'agricultural weed syndrome', making this an ideal model to study the genetic basis of parallel evolution. Understanding parallel evolution hinges on accurate knowledge of the genetic background and origins of existing weedy rice groups. Using population structure analyses of South Asian and US weedy rice, we show that weeds in South Asia have highly heterogeneous genetic backgrounds, with ancestry contributions both from cultivated varieties (aus and indica) and wild rice. Moreover, the two main groups of weedy rice in the USA, which are also related to aus and indica cultivars, constitute a separate origin from that of Asian weeds. Weedy rice populations in South Asia largely converge on presence of red pericarps and awns and on ease of shattering. Genomewide divergence scans between weed groups from the USA and South Asia, and their crop relatives are enriched for loci involved in metabolic processes. Some candidate genes related to iconic weedy traits and competitiveness are highly divergent between some weed-crop pairs, but are not shared among all weed-crop comparisons. Our results show that weedy rice is an extreme example of recurrent evolution, and suggest that most populations are evolving their weedy traits through different genetic mechanisms. © 2017 John Wiley & Sons Ltd.

Long-term balancing selection at the Phosphorus Starvation Tolerance 1 (PSTOL1) locus in wild, domesticated and weedy rice (Oryza).

Science.gov (United States)

Vigueira, Cynthia C; Small, Linda L; Olsen, Kenneth M

2016-04-22

The ability to grow in phosphorus-depleted soils is an important trait for rice cultivation in many world regions, especially in the tropics. The Phosphorus Starvation Tolerance 1 (PSTOL1) gene has been identified as underlying the ability of some cultivated rice varieties to grow under low-phosphorus conditions; however, the gene is absent from other varieties. We assessed PSTOL1 presence/absence in a geographically diverse sample of wild, domesticated and weedy rice and sequenced the gene in samples where it is present. We find that the presence/absence polymorphism spans cultivated, weedy and wild Asian rice groups. For the subset of samples that carry PSTOL1, haplotype sequences suggest long-term selective maintenance of functional alleles, but with repeated evolution of loss-of-function alleles through premature stops and frameshift mutations. The loss-of-function alleles have evolved convergently in multiple rice species and cultivated rice varieties. Greenhouse assessments of plant growth under low- and high-phosphorus conditions did not reveal significant associations with PSTOL1 genotype variation; however, the striking signature of balancing selection at this locus suggests that further phenotypic characterizations of PSTOL1 allelic variants is warranted and may be useful for crop improvement. These findings suggest balancing selection for both functional and non-functional PSTOL1 alleles that predates and transcends Asian rice domestication, a pattern that may reflect fitness tradeoffs associated with geographical variation in soil phosphorus content.

Timing is everything: early degradation of abscission layer is associated with increased seed shattering in U.S. weedy rice

Directory of Open Access Journals (Sweden)

Hepler Peter K

2011-01-01

Full Text Available Abstract Background Seed shattering, or shedding, is an important fitness trait for wild and weedy grasses. U.S. weedy rice (Oryza sativa is a highly shattering weed, thought to have evolved from non-shattering cultivated ancestors. All U.S. weedy rice individuals examined to date contain a mutation in the sh4 locus associated with loss of shattering during rice domestication. Weedy individuals also share the shattering trait with wild rice, but not the ancestral shattering mutation at sh4; thus, how weedy rice reacquired the shattering phenotype is unknown. To establish the morphological basis of the parallel evolution of seed shattering in weedy rice and wild, we examined the abscission layer at the flower-pedicel junction in weedy individuals in comparison with wild and cultivated relatives. Results Consistent with previous work, shattering wild rice individuals possess clear, defined abscission layers at flowering, whereas non-shattering cultivated rice individuals do not. Shattering weedy rice from two separately evolved populations in the U.S. (SH and BHA show patterns of abscission layer formation and degradation distinct from wild rice. Prior to flowering, the abscission layer has formed in all weedy individuals and by flowering it is already degrading. In contrast, wild O. rufipogon abscission layers have been shown not to degrade until after flowering has occurred. Conclusions Seed shattering in weedy rice involves the formation and degradation of an abscission layer in the flower-pedicel junction, as in wild Oryza, but is a developmentally different process from shattering in wild rice. Weedy rice abscission layers appear to break down earlier than wild abscission layers. The timing of weedy abscission layer degradation suggests that unidentified regulatory genes may play a critical role in the reacquisition of shattering in weedy rice, and sheds light on the morphological basis of parallel evolution for shattering in weedy and wild

Influence of Different Supplements on the Commercial Cultivation of Milky White Mushroom

Science.gov (United States)

Alam, Nuhu; Amin, Ruhul; Khair, Abul

2010-01-01

Calocybe indica, known as milky white mushroom, grows and cultivated in the sub-tropical and temperate zones of South Asia. We investigated the most suitable supplements and their levels for the commercial cultivation of milky white mushroom. Rice bran, maize powder, and wheat bran with their different levels (10, 20, 30, 40, and 50%) were used as supplements to evaluate the yield and yield contributing characteristics of C. indica. Primordia initiation was observed between 13.5 and 19.3 days. The results indicated that the 30% maize powder supplement was effective for producing viable fruiting bodies. The maximum diameters of the pileus and stalk were observed with 30% maize powder. The highest biological and economic yield and biological efficiency were also obtained with 30% maize powder as a supplement. The results indicate that increasing the supplement level resulted in less biological efficiency, and that 30% maize powder was the best supplement level for rice straw substrate to cultivate milky white mushrooms. PMID:23956652

Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication1[C][W][OA

Science.gov (United States)

Zhu, Bo-Feng; Si, Lizhen; Wang, Zixuan; Jingjie Zhu, Yan Zhou; Shangguan, Yingying; Lu, Danfeng; Fan, Danlin; Li, Canyang; Lin, Hongxuan; Qian, Qian; Sang, Tao; Zhou, Bo; Minobe, Yuzo; Han, Bin

2011-01-01

The genetic mechanism involved in a transition from the black-colored seed hull of the ancestral wild rice (Oryza rufipogon and Oryza nivara) to the straw-white seed hull of cultivated rice (Oryza sativa) during grain ripening remains unknown. We report that the black hull of O. rufipogon was controlled by the Black hull4 (Bh4) gene, which was fine-mapped to an 8.8-kb region on rice chromosome 4 using a cross between O. rufipogon W1943 (black hull) and O. sativa indica cv Guangluai 4 (straw-white hull). Bh4 encodes an amino acid transporter. A 22-bp deletion within exon 3 of the bh4 variant disrupted the Bh4 function, leading to the straw-white hull in cultivated rice. Transgenic study indicated that Bh4 could restore the black pigment on hulls in cv Guangluai 4 and Kasalath. Bh4 sequence alignment of all taxa with the outgroup Oryza barthii showed that the wild rice maintained comparable levels of nucleotide diversity that were about 70 times higher than those in the cultivated rice. The results from the maximum likelihood Hudson-Kreitman-Aguade test suggested that the significant reduction in nucleotide diversity in rice cultivars could be caused by artificial selection. We propose that the straw-white hull was selected as an important visual phenotype of nonshattered grains during rice domestication. PMID:21263038

Genetic diversity associated with conservation of endangered Dongxiang wild rice (Oryza rufipogon)

Science.gov (United States)

The wild progenitor species (Oryza rufipogon) of Asian cultivated rice (O. sativa) is located in Dongxiang county, China where it is considered the northernmost range worldwide. Nine ex situ and three in situ populations of the Dongxiang wild rice (DXWR) and four groups of modern cultivars were geno...

Aerobic rice mechanization: techniques for crop establishment

Science.gov (United States)

Khusairy, K. M.; Ayob, H.; Chan, C. S.; Fauzi, M. I. Mohamed; Mohamad Fakhrul, Z. O.; Shahril Shah, G. S. M.; Azlan, O.; Rasad, M. A.; Hashim, A. M.; Arshad, Z.; E, E. Ibrahim; Saifulizan, M. N.

2015-12-01

Rice being the staple food crops, hundreds of land races in it makes the diversity of rice crops. Aerobic rice production was introduced which requires much less water input to safeguard and sustain the rice production and conserve water due to decreasing water resources, climatic changes and competition from urban and industrial users. Mechanization system plays an important role for the success of aerobic rice cultivation. All farming activities for aerobic rice production are run on aerobic soil conditions. Row seeder mechanization system is developed to replace conventional seeding technique on the aerobic rice field. It is targeted for small and the large scale aerobic rice farmers. The aero - seeder machine is used for the small scale aerobic rice field, while the accord - seeder is used for the large scale aerobic rice field. The use of this mechanization machine can eliminate the tedious and inaccurate seeding operations reduce labour costs and increases work rate. The machine is easy to operate and it can increase crop establishment rate. It reduce missing hill, increasing planting and crop with high yield can be produce. This machine is designed for low costs maintenance and it is easy to dismantle and assemble during maintenance and it is safe to be used.

Anopheles larval abundance and diversity in three rice agro-village complexes Mwea irrigation scheme, central Kenya

Directory of Open Access Journals (Sweden)

Mwangangi Joseph M

2010-08-01

Full Text Available Abstract Background The diversity and abundance of Anopheles larvae has significant influence on the resulting adult mosquito population and hence the dynamics of malaria transmission. Studies were conducted to examine larval habitat dynamics and ecological factors affecting survivorship of aquatic stages of malaria vectors in three agro-ecological settings in Mwea, Kenya. Methods Three villages were selected based on rice husbandry and water management practices. Aquatic habitats in the 3 villages representing planned rice cultivation (Mbui Njeru, unplanned rice cultivation (Kiamachiri and non-irrigated (Murinduko agro-ecosystems were sampled every 2 weeks to generate stage-specific estimates of mosquito larval densities, relative abundance and diversity. Records of distance to the nearest homestead, vegetation coverage, surface debris, turbidity, habitat stability, habitat type, rice growth stage, number of rice tillers and percent Azolla cover were taken for each habitat. Results Captures of early, late instars and pupae accounted for 78.2%, 10.9% and 10.8% of the total Anopheles immatures sampled (n = 29,252, respectively. There were significant differences in larval abundance between 3 agro-ecosystems. The village with 'planned' rice cultivation had relatively lower Anopheles larval densities compared to the villages where 'unplanned' or non-irrigated. Similarly, species composition and richness was higher in the two villages with either 'unplanned' or limited rice cultivation, an indication of the importance of land use patterns on diversity of larval habitat types. Rice fields and associated canals were the most productive habitat types while water pools and puddles were important for short periods during the rainy season. Multiple logistic regression analysis showed that presence of other invertebrates, percentage Azolla cover, distance to nearest homestead, depth and water turbidity were the best predictors for Anopheles mosquito larval

Adapting rice production to climate change for sustainable blue water consumption: an economic and virtual water analysis

Science.gov (United States)

Darzi-Naftchali, Abdullah; Karandish, Fatemeh

2017-12-01

Sustainable utilization of blue water resources under climate change is of great significance especially for producing high water-consuming crops in water-scarce regions. Based on the virtual water concept, we carried out a comprehensive field-modeling research to find the optimal agricultural practices regarding rice blue water consumption under prospective climate change. The DSSAT-CERES-Rice model was used in combination with 20 GCMs under three Representative Concentration Pathways of low (RCP2.6), intermediate (RCP4.6), and very high (RCP8.5) greenhouse concentrations to predict rice yield and water requirement and related virtual water and economic return for the base and future periods. The crop model was calibrated and validated based on the 2-year field data obtained from consolidated paddy fields of the Sari Agricultural Sciences and Natural Resources University during 2011 and 2012 rice cropping cycles. Climate change imposes an increase of 0.02-0.04 °C in air temperature which consequently shifts rice growing seasons to winter season, and shorten the length of rice physiological maturity period by 2-15 days. While rice virtual water reduces by 0.1-20.6% during 2011-2070, reduced rice yield by 3.8-22.6% over the late twenty-first century results in a considerable increase in rice virtual water. By increasing the contribution of green water in supplying crop water requirement, earlier cropping could diminish blue water consumption for rice production in the region while cultivation postponement increases irrigation water requirement by 2-195 m3 ha-1. Forty days delay in rice cultivation in future will result in 29.9-40.6% yield reduction and 43.9-60% increase in rice virtual water under different scenarios. Earlier cropping during the 2011-2040 and 2041-2070 periods would increase water productivity, unit value of water, and economic value of blue water compared to the base period. Based on the results, management of rice cultivation calendar is a

A selfish genetic element confers non-Mendelian inheritance in rice.

Science.gov (United States)

Yu, Xiaowen; Zhao, Zhigang; Zheng, Xiaoming; Zhou, Jiawu; Kong, Weiyi; Wang, Peiran; Bai, Wenting; Zheng, Hai; Zhang, Huan; Li, Jing; Liu, Jiafan; Wang, Qiming; Zhang, Long; Liu, Kai; Yu, Yang; Guo, Xiuping; Wang, Jiulin; Lin, Qibing; Wu, Fuqing; Ren, Yulong; Zhu, Shanshan; Zhang, Xin; Cheng, Zhijun; Lei, Cailin; Liu, Shijia; Liu, Xi; Tian, Yunlu; Jiang, Ling; Ge, Song; Wu, Chuanyin; Tao, Dayun; Wang, Haiyang; Wan, Jianmin

2018-06-08

Selfish genetic elements are pervasive in eukaryote genomes, but their role remains controversial. We show that qHMS7 , a major quantitative genetic locus for hybrid male sterility between wild rice ( Oryza meridionalis ) and Asian cultivated rice ( O. sativa ), contains two tightly linked genes [ Open Reading Frame 2 ( ORF2 ) and ORF3 ]. ORF2 encodes a toxic genetic element that aborts pollen in a sporophytic manner, whereas ORF3 encodes an antidote that protects pollen in a gametophytic manner. Pollens lacking ORF3 are selectively eliminated, leading to segregation distortion in the progeny. Analysis of the genetic sequence suggests that ORF3 arose first, followed by gradual functionalization of ORF2 Furthermore, this toxin-antidote system may have promoted the differentiation and/or maintained the genome stability of wild and cultivated rice. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Factors Affecting the Growth and Production of Milk-Clotting Enzyme by Amylomyces rouxii in Rice Liquid Medium

Directory of Open Access Journals (Sweden)

Pei-Jing Yu

2005-01-01

Full Text Available Amylomyces rouxii is one of the main fungi usually coexisting with yeasts in Chinese yeast ball, the starter of chiu-niang, a traditional Chinese fermented product from rice. In the present study, growth and production of milk-clotting enzyme (MCE in gelatinous rice liquid culture of A. rouxii as influenced by waxy (gelatinous rice content in the medium (5–20 %, temperature (25–40 °C, cultivation time (1–6 days, shaking speeds (0–150 rpm and metal ions (Na+, K+, Zn2+, Mg2+, Mn2+, Cu2+, Ca2+, Fe3+ and Al3+ were investigated. Results revealed that rice content in the medium, shaking speed, temperature and cultivation time all affected the mycelial propagation and the production of milk-clotting enzyme by A. rouxii in the rice liquid culture. The maximum milk-clotting enzyme activity of ca. 1.22 unit/mL of medium was observed in the 3-day static culture of test organism grown at 30 °C in the medium containing 20 % of gelatinous rice, while mycelial propagation increased with the increase of cultivation time and shaking speed. Furthermore, a significant increase (p<0.05 in the milk-clotting enzyme activity of ca. 1.90 unit/mL of medium, which was about 1.55-fold of the control, was observed when Al3+ was added to the rice liquid medium.

production of bioethanol from rice straw using yeast extracts ...

African Journals Online (AJOL)

user

70% of production cost using less important materials, like agricultural waste ... rice cultivation and wood industries results in the ... method for pretreatment and enzymatic saccharification ... The economic problems consist exclusive of cost.

Improvement of Salinity Stress Tolerance in Rice: Challenges and Opportunities

Directory of Open Access Journals (Sweden)

Thi My Linh Hoang

2016-10-01

Full Text Available Rice (Oryza sativa L. is an important staple crop that feeds more than one half of the world’s population and is the model system for monocotyledonous plants. However, rice is very sensitive to salinity and is the most salt sensitive cereal crop with a threshold of 3 dSm−1 for most cultivated varieties. Despite many attempts using different strategies to improve salinity tolerance in rice, the achievements so far are quite modest. This review aims to discuss challenges that hinder the improvement of salinity stress tolerance in rice as well as potential opportunities for enhancing salinity stress tolerance in this important crop.

Silicon fertilization and soil water tensions on rice development and yield

Directory of Open Access Journals (Sweden)

Jakeline R. de Oliveira

2016-02-01

Full Text Available ABSTRACT The cultivation of upland rice (Oryza sativa in Brazil occurs mainly in the Cerrado, a region with adverse weather conditions. The use of silicon in its cultivation becomes important, since this nutrient provides higher rigidity, lower transpiration and higher resistance to dry spells in rice plants. The objective of the present study was to evaluate the effect of silicon fertilization and soil water tensions on upland rice development and yield in a Cerrado Oxisol. A 5 x 5 fractionated factorial with five soil water tensions (0, 15, 30, 45 and 60 kPa and five silicon doses (0, 120, 240, 480 and 960 mg dm-3 was used, which were distributed in a randomized block design, with four replicates. Plant height, number of tillers, number of panicles, number of grains per panicle, numbers of full and empty grains and percentage of empty grains were evaluated. Silicon fertilization promotes increased tillering in rice plants at the dose of 960 mg dm-3. The numbers of tillers and panicles decreased with the application of silicon up to the doses of 460 and 490 mg dm-3, respectively. The increase in soil water tensions reduced plant height and the number of full grains, and increased the percentage of empty grains of upland rice.

Ecological balance between supply and demand based on cultivated land ecological footprint method in Guizhou Province

Science.gov (United States)

Qian, Qinghuan; Zhou, Dequan; Bai, Xiaoyong; Xiao, Jianyong; Chen, Fei; Zeng, Cheng

2018-01-01

In order to construct the indicators of the balance between supply and demand of the cultivated land ecological carrying capacity, basing on the relation of the cultivated land ecological carrying capacity supply and demand, applying the model of Cultivated Land Ecological Footprints and the method of CIS and considering the factors of cultivated land production, taking the statistical data of 2015 as an example, and then made a systematic evaluation of the balance between supply and demand of the cultivated land ecological carrying capacity in Guizhou Province. The results show that (1) the spatial distribution of supply and demand of cultivated land ecological carrying capacity in Guizhou is unbalanced, and the northern and eastern parts are the overloading area, the middle, the south and the west parts are the balance area. (2) From the perspective of cultivated land structure, the crops with ecological carrying capacity surplus were rice, vegetables and peanuts, among which rice was the highest and the ecological balance index was 0.7354. The crops with ecological carrying capacity overload were potato, wheat, maize, rapeseeds, soybeans and cured tobacco, of which the index of potato up to 7.11, other types of indices are less than 1.5. The research can provide the ecological security early warning, the overall plan of land use and sustainable development of the area cultivated land with scientific evidence and decision support.

Tool for Land Suitability Assessment for Rice Production in

African Journals Online (AJOL)

komla

Emphasis on rice production should be to target a higher ... from 25 °C, Ghana's thermal .... mechanical cultivation, effective soil depth Climate data. TABLE 2. Statistical weightings for dominant and ... calculated from historical daily.

Rice straw addition as sawdust substitution in oyster mushroom (Pleurotus ostreatus) planted media

Science.gov (United States)

Utami, Christine Pamardining; Susilawati, Puspita Ratna

2017-08-01

Oyster mushroom is favorite by the people because of the high nutrients. The oyster mushroom cultivation usually using sawdust. The availability of sawdust become difficult to find. It makes difficulties of mushroom cultivation. Rice straw as an agricultural waste can be used as planted media of oyster mushroom because they contain much nutrition needed to the mushroom growth. The aims of this research were to analysis the influence of rice straw addition in a baglog as planted media and to analysis the concentration of rice straw addition which can substitute sawdust in planted media of oyster mushroom. This research used 4 treatment of sawdust and rice straw ratio K = 75 % : 0 %, P1 = 60 % : 15 %, P2 = 40 % : 35 %, P3 = 15 % : 60 %. The same material composition of all baglog was bran 20%, chalk 5%, and water 70%. The parameters used in this research were wet weight, dry weight, moisture content and number of the mushroom fruit body. Data analysis was used ANOVA test with 1 factorial. The results of this research based on statistical analysis showed that there was no influence of rice straw addition in a planted media on the oyster mushroomgrowth. 15% : 60% was the concentrationof rice straw additionwhich can substitute the sawdust in planted media of oyster mushroom.

Water Footprint Analysis of Paddy Rice and the Nexus of Water-Land-Rice in Taiwan: 2005-2014

Science.gov (United States)

Wu, T. C.

2018-05-01

This paper explores the water footprint (WF) of paddy rice and the nexus of water-land-food (rice) in Taiwan. The research results indicate that the average annual rice WF for the years 2005-2014 was about 7,580 m3/ton, of which 80% was blue, 17% was green, and 3% was grey. This average annual footprint was about 5.7 times larger than the 2000-2004 average annual WF of rice for countries around the globe of 1325 m3/ton, of which 48% was green, 44% was blue, and 8% was grey. The blue WF is the most important source of water for rice production in Taiwan. The water consumption of the second crop is higher than that of the first crop. The water use efficiency in the southern region of Taiwan is the best, while the northern part of Taiwan exhibits relatively high inefficiency. The rates of change in cultivated land and rice production in Taiwan are decreasing in a stable manner. However, the annual rate of change in the rice WF is unstable. The nexus of land, water, and food should be taken into consideration to protect water availability, maintain agricultural production, and avoid land degradation. The results could offer useful information for agriculture policy and water resource management.

Greenhouse gas budget from a rice paddy field in the Albufera of Valencia, Spain.

Science.gov (United States)

Meijide, Ana; López-Ballesteros, Ana; Calvo-Roselló, Esperanza; López-Jiménez, Ramón; Recio-Huetos, Jaime; Calatayud, Vicent; Carrara, Arnaud; Serrano-Ortiz, Penelope

2017-04-01

Rice paddy fields are large sources of anthropogenic methane (CH4) and therefore many studies have assessed CH4 fluxes from rice paddy fields, mainly in Asia where most of the rice cultivation takes place. However, rice is also cultivated in the Mediterranean, where climatic and management conditions greatly differ. In the Albufera of Valencia, the largest freshwater lagoon in Spain, rice paddy fields have the particularity of being flooded not only while the rice grows, but also after the harvest during the winter. These flooding conditions might result in emissions which are very specific of this ecosystem, and cannot be extrapolated from other studies. We studied CH4 fluxes in a rice paddy field in the Albufera of Valencia at different stages of rice cultivation using the eddy covariance technique and static chambers. We additionally measured carbon dioxide (CO2), water fluxes and nitrous oxide (N2O) fluxes with eddy covariance and chamber methods respectively, in order to obtain a full greenhouse gas (GHG) budget. Our study also aimed at providing a mechanistic understanding of GHG emissions at different stages of rice cultivation, and therefore we also used the Enhanced and Normalized Vegetation Indexes (EVI and NDVI, respectively), derived from remote sensing images. The general ecosystem functioning encompasses three different phases. The first one, over the autumn and the winter, a biological dormancy period causes low CO2 emissions (ca. 1-5 µmol m-2 s-1), which coincides with the EVI and NDVI. The intermittent flooding taking place during this period is expected to cause CH4 emissions. Then, during the spring months (March-May), larger CO2 respiratory emissions take place during the daytime (> 5 µmol m-2 s-1) due to an increase in air temperature, which turn to neutral at the end of spring due to the start of photosynthesis by the rice. The third phase corresponds to the vegetation growth, when the net CO2 uptake increases gradually up to maximum CO2

The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice.

Science.gov (United States)

Burgos, Nilda Roma; Singh, Vijay; Tseng, Te Ming; Black, Howard; Young, Nelson D; Huang, Zhongyun; Hyma, Katie E; Gealy, David R; Caicedo, Ana L

2014-11-01

The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management. © 2014 American Society of Plant Biologists. All Rights Reserved.

ECONOMIC ANALYSIS OF SMALL HOLDER RICE PRODUCTION SYSTEMS IN EBONYI STATE SOUTH EAST, NIGERIA

Directory of Open Access Journals (Sweden)

Nwaobiala C.U.

2013-11-01

Full Text Available Economic analysis of Upland and Swamp rice production in Ebonyi State, South east Nigeria was studied and analyzed in 2011 farming season. Purposive and multistage random sampling technique was used to select agricultural blocks, circles and rice farmers. The sample size was 240 rice farmers (120 Agricultural Development Programme (ADP Upland rice contact farmers and 120 Agricultural Development Programme (ADP Swamp contact rice farmers. Data for the analysis were collected from a structured questionnaire. The result indicates that mean ages of upland rice farmers was 37.3 years while swamp rice farmers had 39.2 years. The mean farming experience for both farmers were 8.5 years (upland rice farmers and 8.8 years (swamp rice farmers with farm sizes of 1.2 and 1.1 hectares for upland rice farmers and swamp rice farmers respectively. Upland rice farmers had an annual farm income of 189,410.00 NGN (1,222USD as against 201,166.00 NGN (1,297.85USD for Swamp rice farmers. The multiple regression (Cobb Douglas estimates of the determinants of output of upland rice showed that coefficients age, farming experience, farm size, variable inputs and farm income were positively signed at given levels of probability while capital inputs was negative. The Cobb Douglas regression estimates of the determinants of output of Swamp rice showed that the coefficients of education, labour cost, farm size, variable inputs and farm income were positively signed and significant at given levels of probability as well as capital inputs which was negative. The result indicates that net profit from Upland rice cultivation was 92,800.00 NGN (598.71USD with a Benefit Cost Ratio of N1.55 (1.56USD. The net profit from Swamp rice cultivation was 132,090.00 NGN (852.19USD and a Benefit Cost Ratio of 1.75 NGN (1.75USD. Access to credit to rice farmers, subsidy on farm inputs, dissemination of improved rice technologies by extension agents and formation of farmer groups were advocated

Studies on mineral nutrition and safety of wild rice (Oryza L.).

Science.gov (United States)

Jiang, Shuli; Shi, Chunhai; Wu, Jianguo

2009-01-01

Mineral element contents of five wild rice were analyzed, including mineral nutrient elements such as phosphorus (P), potassium (K), calcium (Ca), sodium (Na), magnesium (Mg), iron (Fe), zinc (Zn), copper (Cu), manganese (Mn) and selenium (Se), and the potential toxic elements arsenic (As), mercury (Hg), lead (Pb) and cadmium (Cd). The results showed that the contents of K, Mg, Fe, Zn, Cu, Mn and Se in five wild rice materials were much higher than the cultivate variety Zhou 903 in both brown and milled rice. Wild rice also had lower potential toxic element contents of Hg, Pb and Cd compared with Zhou 903 in brown rice and milled rice, respectively. Among five wild rice samples, WR-3 from Uganda had the highest level of P, K, Ca, Na, Mg, Fe, Zn, Mn and Se, and the lowest contents of Hg, Pb and Cd.

Improvement of traditional local rice varieties through induced mutations using nuclear techniques

International Nuclear Information System (INIS)

Pham Van Ro; Do Huu At

2001-01-01

'Improvement of local rice varieties for high yield, resistance to disease and insect pests (brown plant hopper and rice blast) and export quality through induced mutations for the Mekong Delta' started in 1993. After six years, it showed effecting on the field in the MD as well as at the south of Vietnam. TNDB-100 manifest very wide adaptation and yield stable variety. THDB is suitable for deepwater rice region, coastal area, where rice cultivation effected by acid sulphate and salinity conditions. Both varieties are good example for the method. Thank to good Co-operation from extension center from provinces, hundred classes of extension were organized to recommend to the farmers. And thank to the strongly supporting from IAEA so that nearly 400,000 ha of TNDB-100 occupied at the south of Vietnam as well as nearly 15,000 ha of THDB grown in the coastal as well as rainfed lowland rice areas at the South of Vietnam. To continue the rice improvement by this technique, seeds of six traditional local varieties were exposed under different dose of gamma rays to create new mutants. At present day hundred improved breeding lines were selected, a dozen of uniform lines were isolated and entranced the yield trail as well as regional testing program. From these improved varieties would be selected to contribute to the rice cultivation at the south of Vietnam in the next years. (author)

Improvement of traditional local rice varieties through induced mutations using nuclear techniques

Energy Technology Data Exchange (ETDEWEB)

Pham Van Ro; Do Huu At [Cuu Long Delta Rice Research Institute (Viet Nam)

2001-03-01

'Improvement of local rice varieties for high yield, resistance to disease and insect pests (brown plant hopper and rice blast) and export quality through induced mutations for the Mekong Delta' started in 1993. After six years, it showed effecting on the field in the MD as well as at the south of Vietnam. TNDB-100 manifest very wide adaptation and yield stable variety. THDB is suitable for deepwater rice region, coastal area, where rice cultivation effected by acid sulphate and salinity conditions. Both varieties are good example for the method. Thank to good Co-operation from extension center from provinces, hundred classes of extension were organized to recommend to the farmers. And thank to the strongly supporting from IAEA so that nearly 400,000 ha of TNDB-100 occupied at the south of Vietnam as well as nearly 15,000 ha of THDB grown in the coastal as well as rainfed lowland rice areas at the South of Vietnam. To continue the rice improvement by this technique, seeds of six traditional local varieties were exposed under different dose of gamma rays to create new mutants. At present day hundred improved breeding lines were selected, a dozen of uniform lines were isolated and entranced the yield trail as well as regional testing program. From these improved varieties would be selected to contribute to the rice cultivation at the south of Vietnam in the next years. (author)

C and N accumulations in soil aggregates determine nitrous oxide emissions from cover crop treated rice paddy soils during fallow season

International Nuclear Information System (INIS)

Pramanik, Prabhat; Haque, Md. Mozammel; Kim, Sang Yoon; Kim, Pil Joo

2014-01-01

Combination of leguminous and non-leguminous plant residues are preferably applied in rice paddy soils to increase the rate of organic matter mineralization and to improve plant growth. However, organic matter addition facilitates methane (CH 4 ) emission from rice paddy soil. Mineralization of organic nitrogen (N) increases NO 3 –N concentrations in soil, which are precursors for the formation of nitrous oxide (N 2 O). However, N 2 O is a minor greenhouse gas emitted from submerged rice field and hence is not often considered during calculation of total global warming potential (GWP) during rice cultivation. The hypothesis of this study was that fluxes of N 2 O emissions might be changed after removal of flooded water from rice field and the effect of cover crops on N 2 O emissions in the fallow season might be interesting. However, the effects of N-rich plant residues on N 2 O emission rates in the fallow season and its effect on annual GWP were not studied before. In this experiment, combination of barley (non-leguminous) and hairy vetch (leguminous) biomasses were applied at 9 Mg ha −1 and 27 Mg ha −1 rates in rice paddy soil. Cover crop application significantly increased CH 4 emission flux while decreased N 2 O emissions during rice cultivation. The lowest N 2 O emission was observed in 27 Mg ha −1 cover crop treated plots. Cover crop applications increased N contents in soil aggregates especially in smaller aggregates (< 250 μm), and that proportionately increased the N 2 O emission potentials of these soil aggregates. Fluxes of N 2 O emissions in the fallow season were influenced by the N 2 O emission potentials of soil aggregates and followed opposite trends as those observed during rice cultivation. Therefore, it could be concluded that the doses of cover crop applications for rice cultivation should not be optimized considering only CH 4 , but N 2 O should also be considered especially for fallow season to calculate total GWP. - Highlights: �

Delving deeper into technological innovations to understand differences in rice quality.

Science.gov (United States)

Calingacion, Mariafe; Fang, Lu; Quiatchon-Baeza, Lenie; Mumm, Roland; Riedel, Arthur; Hall, Robert D; Fitzgerald, Melissa

2015-12-01

Increasing demand for better quality rice varieties, which are also more suited to growth under sub-optimal cultivation conditions, is driving innovation in rice research. Here we have used a multi-disciplinary approach, involving SNP-based genotyping together with phenotyping based on yield analysis, metabolomic analysis of grain volatiles, and sensory panel analysis to determine differences between two contrasting rice varieties, Apo and IR64. Plants were grown under standard and drought-induced conditions. Results revealed important differences between the volatile profiles of the two rice varieties and we relate these differences to those perceived by the sensory panel. Apo, which is the more drought tolerant variety, was less affected by the drought condition concerning both sensory profile and yield; IR64, which has higher quality but is drought sensitive, showed greater differences in these characteristics in response to the two growth conditions. Metabolomics analyses using GCxGC-MS, followed by multivariate statistical analyses of the data, revealed a number of discriminatory compounds between the varieties, but also effects of the difference in cultivation conditions. Results indicate the complexity of rice volatile profile, even of non-aromatic varieties, and how metabolomics can be used to help link changes in aroma profile with the sensory phenotype. Our outcomes also suggest valuable multi-disciplinary approaches which can be used to help define the aroma profile in rice, and its underlying genetic background, in order to support breeders in the generation of improved rice varieties combining high yield with high quality, and tolerance of both these traits to climate change.

Serine Proteases-Like Genes in the Asian Rice Gall Midge Show Differential Expression in Compatible and Incompatible Interactions with Rice

Directory of Open Access Journals (Sweden)

Suresh Nair

2011-04-01

Full Text Available The Asian rice gall midge, Orseolia oryzae (Wood-Mason, is a serious pest of rice. Investigations into the gall midge-rice interaction will unveil the underlying molecular mechanisms which, in turn, can be used as a tool to assist in developing suitable integrated pest management strategies. The insect gut is known to be involved in various physiological and biological processes including digestion, detoxification and interaction with the host. We have cloned and identified two genes, OoprotI and OoprotII, homologous to serine proteases with the conserved His87, Asp136 and Ser241 residues. OoProtI shared 52.26% identity with mosquito-type trypsin from Hessian fly whereas OoProtII showed 52.49% identity to complement component activated C1s from the Hessian fly. Quantitative real time PCR analysis revealed that both the genes were significantly upregulated in larvae feeding on resistant cultivar than in those feeding on susceptible cultivar. These results provide an opportunity to understand the gut physiology of the insect under compatible or incompatible interactions with the host. Phylogenetic analysis grouped these genes in the clade containing proteases of phytophagous insects away from hematophagous insects.

Hydroponic cultivation of Oncidium baueri

Directory of Open Access Journals (Sweden)

Daniele Brandstetter Rodrigues

2017-08-01

Full Text Available In Brazil, orchid cultivation has been increasing steadily over the last few years and contributing significantly to the economy. It has been reported that several vegetable crops and ornamentals have been successfully grown by soilless cultivation. The orchid Oncidium baueri Lindl. is grown on pot substrates. Nevertheless, hydroponics is an excellent alternative, especially for the production of cut flowers and bare root plants. The objective of this study was to evaluate the development of Oncidium baueri on two soilless systems: (a pots containing Amafibra® coconut fiber, carbonized rice husk, and pine bark (1:1:1 irrigated with nutrient solution every 15 d; and (b a nutrient film technique (NFT hydroponic system irrigated with nutrient solution daily. Shoot height, pseudobulb diameter, and number of sprouts were evaluated monthly. The number of flowering plants, number of flowers, dry mass of shoots, and dry mass of roots were evaluated 11 months after onset of experiment. The pot cultivation system yielded more flowers and higher values for all vegetative parameters than the NFT hydroponic system.

Gain-of-function mutagenesis approaches in rice for functional genomics and improvement of crop productivity.

Science.gov (United States)

Moin, Mazahar; Bakshi, Achala; Saha, Anusree; Dutta, Mouboni; Kirti, P B

2017-07-01

The epitome of any genome research is to identify all the existing genes in a genome and investigate their roles. Various techniques have been applied to unveil the functions either by silencing or over-expressing the genes by targeted expression or random mutagenesis. Rice is the most appropriate model crop for generating a mutant resource for functional genomic studies because of the availability of high-quality genome sequence and relatively smaller genome size. Rice has syntenic relationships with members of other cereals. Hence, characterization of functionally unknown genes in rice will possibly provide key genetic insights and can lead to comparative genomics involving other cereals. The current review attempts to discuss the available gain-of-function mutagenesis techniques for functional genomics, emphasizing the contemporary approach, activation tagging and alterations to this method for the enhancement of yield and productivity of rice. © The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Genetic relatedness among indigenous rice varieties in the Eastern Himalayan region based on nucleotide sequences of the Waxy gene.

Science.gov (United States)

Choudhury, Baharul I; Khan, Mohammed L; Dayanandan, Selvadurai

2014-12-29

Indigenous rice varieties in the Eastern Himalayan region of Northeast India are traditionally classified into sali, boro and jum ecotypes based on geographical locality and the season of cultivation. In this study, we used DNA sequence data from the Waxy (Wx) gene to infer the genetic relatedness among indigenous rice varieties in Northeast India and to assess the genetic distinctiveness of ecotypes. The results of all three analyses (Bayesian, Maximum Parsimony and Neighbor Joining) were congruent and revealed two genetically distinct clusters of rice varieties in the region. The large group comprised several varieties of sali and boro ecotypes, and all agronomically improved varieties. The small group consisted of only traditionally cultivated indigenous rice varieties, which included one boro, few sali and all jum varieties. The fixation index analysis revealed a very low level of differentiation between sali and boro (F(ST) = 0.005), moderate differentiation between sali and jum (F(ST) = 0.108) and high differentiation between jum and boro (F(ST) = 0.230) ecotypes. The genetic relatedness analyses revealed that sali, boro and jum ecotypes are genetically heterogeneous, and the current classification based on cultivation type is not congruent with the genetic background of rice varieties. Indigenous rice varieties chosen from genetically distinct clusters could be used in breeding programs to improve genetic gain through heterosis, while maintaining high genetic diversity.

DIFFUSION AND ADOPTION OF NEW RICE VARIETIES FOR AFRICA

African Journals Online (AJOL)

Prof. Adipala Ekwamu

Saharan Africa (SSA). It is ranked ... cultivated, rice is the most rapidly growing food .... population. Another parameter of interest is the average treatment effect on the treated, commonly denoted as ATE1 or ATT (Wooldridge, 2002, chapter 18).

[Introduction of upland rice cultivars to eastern Keerqin sandy land and their biological characteristics].

Science.gov (United States)

Zeng, Dehui; Zhang, Chunxing; Wang, Guirong; Fan, Zhiping

2004-10-01

Developing water-saving rice cultivation is one important strategy for food security in China. This paper reported the experimental results of introducing six upland rice cultivars to eastern Keerqin sandy land. The field experiment results showed that under the condition of 60% water-saving, the yield of cultivars XH 95-13 and XH 95-13-6 was 10.2% and 5.5% higher than the control, respectively, while other four cultivars decreased by 6.7%-18.6%. Economically, all the cultivars except JP 121 had a higher income than the control, and the profitability of cultivars XH 95-13 and XH 95-13-6 reached 24.0% and 19.3%, respectively. The water productivity of all the six cultivars was over 0.566 kg x m(-3), increased by 59.89%-116.38%. Pot experiment showed that 12.1%-16.3% of soil moisture in 0-15 cm layer was beneficial to the growth of upland rice. In eastern Keerqin sandy land, effective tillers occurred before July 18. In brief, upland rice production could be extensively applicable in eastern Keerqin sandy land to gradually alternate the traditional lowland rice cultivation with continuous flooding, and save much underground water.

Identification of Striga hermonthica-Resistant Upland Rice Varieties in Sudan and Their Resistance Phenotypes

OpenAIRE

Samejima, Hiroaki; Babiker, Abdel G.; Mustafa, Ahmed; Sugimoto, Yukihiro

2016-01-01

Rice has become a major staple cereal in sub-Saharan Africa. Currently, upland rice cultivation is expanding particularly in rainfed areas where the root parasitic weed Striga hermonthica, a major constraint to cereal production, is endemic. Laboratory, pot, and semi-controlled open air experiments were performed to evaluate resistance of selected rice varieties in Sudan to a resident S. hermonthica population. In the laboratory, 27 varieties were screened for post-attachment resistance using...

The Impact of Herbicide-Resistant Rice Technology on Phenotypic Diversity and Population Structure of United States Weedy Rice1[W][OPEN

Science.gov (United States)

Burgos, Nilda Roma; Singh, Vijay; Tseng, Te Ming; Black, Howard; Young, Nelson D.; Huang, Zhongyun; Hyma, Katie E.; Gealy, David R.; Caicedo, Ana L.

2014-01-01

The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management. PMID:25122473

Gene, protein, and network of male sterility in rice

OpenAIRE

Wang, Kun; Peng, Xiaojue; Ji, Yanxiao; Yang, Pingfang; Zhu, Yingguo; Li, Shaoqing

2013-01-01

Rice is one of the most important model crop plants whose heterosis has been well-exploited in commercial hybrid seed production via a variety of types of male-sterile lines. Hybrid rice cultivation area is steadily expanding around the world, especially in Southern Asia. Characterization of genes and proteins related to male sterility aims to understand how and why the male sterility occurs, and which proteins are the key players for microspores abortion. Recently, a series of genes and prot...

Increasing Efficiency of Soil Fertility Map for Rice Cultivation Using Fuzzy Logic, AHP and GIS

Directory of Open Access Journals (Sweden)

javad seyedmohammadi

2017-02-01

fertility groups for better management of soil and plant nutrition. Weight of soil parameters was0.54, 0.29 and 0.17 for organic carbon, available phosphor and potassium, respectively. Fuzzy map of study area includes five soil fertility groups as: 22.9% very high fertility, 27.7% high fertility, 35.53% medium fertility, 10.48% low fertility and 3.39% very low fertility. Consequently, a separated map for soil fertility prepared to evaluate soil fertility of study area for rice cultivation. Toinvestigatethe efficiency of fuzzy model and AHP in increasing the accuracy of soil fertility map, soil fertility map with Boolean method prepared as well. Boolean map showed 58.88% fertile and 41.12% unfertile.15 soil samples from different soil fertility groups of study area were derived fromcontrol of maps accuracy. 13 renewed samples of 15 and 9 soil samples have matched with fuzzy and Boolean map, respectively. Comparison of parameters mean in fuzzy map fertility groups showed that parameters mean amounts of very high and high fertility groups are higher than optimum level except potassium that is a few lower than optimum level in high fertility group, therefore, addition of fertilizers in these groups could not be useful to increase rice crop production. Phosphorus parameter amount is lower than the critical level in very low, low and medium fertility groups, then in these groups phosphorus fertilizer should be added to the soil toincreaserice production. The amount of potassium parameter is higher than the critical level and lower than optimum limit in very low, low, medium and high fertility groups, then in these groups addition of potassium fertilizer will results in theincrease of production. Organic carbon amount is lower than optimum level in very low and low fertility groups. With regard to the relation between organic carbon andnitrogen and phosphorus, therefore, the addition of organic carbon fertilizer could compensate deficit of nitrogen and phosphorus in these groups

Mapping and characterizing mangrove rice growing environments in West-Africa using remote sensing and secondary data

NARCIS (Netherlands)

Adefurin, O.; Hamdy, M; Zwart, S.J.

2016-01-01

Rice is one of the major staple foods consumed in Africa and its demand continues to increase as a result of population growth, urbanization and changing diets. Mangrove rice cultivation is of importance along the West-African Atlantic coast from Senegal and Gambia down to Guinea-Bissau,

Development of labor saving operation technique by making large scale paddy field and direct seeding cultivation of rice in Tohoku district [Japan], 2: Development of technique for automatic precision laser-levelling system

International Nuclear Information System (INIS)

Kimura, S.; Imazono, S.; Yaji, Y.

1999-01-01

1) Preparation for large large paddy fields and utilization of direct rice seeding cultivation are expected to be the key technologies for the low cost and labor saving large farm rice cultivation. To achieve this, the technique of land leveling for field operations have to be developed. A precise land leveling operation by a wheel tractor with laser-beam emitter and recover in a wet paddy field are developed. 2) The automatic measurement system of a rice paddy field surface level by a tractor that we developed was highly practical. After measured data ate stored in a memory of hand-held computer the standard deviation of a field height value is shown on the display. Also, measured data are exported to the personal computer and by RC232C, the contour map of the paddy field is draw quickly, which is useful for the land leveling work. 3) Considering the relation between rice seed germination and water depth in the field, the preciseness of the field leveling for direct rice seeding is required to be under 1.5cm of standard deviation (s.d.). To realize this preciseness, a prototype leveling aparatus consisting a laser emitter, a laser receiver and dry land leveler pulled by a tracter, was developed and was tested the performance. The results of land leveling test at a field of 1 ha indicated that the elevation difference of the field of 16cm was improved to that of 92% of +- 2.5cm (1.58cm s.d.) after leveling work. The working efficiency was 0.57hour/10a. For a precise leveling work, the of the soil water content should be under the plastic limitation, under which less amount of soil adoheres to the blade of the leveler. The performance tests of the laser assisted leveling apparatus for a paddy harrowing work revealed that for an accurate operation only a blade should be controlled by a hydraulic cylinder according to a laser beam. Since large amount of soil can not be handled by the apparatus, the leveling for a paddy harrowing work is recommended for a fine leveling

C and N accumulations in soil aggregates determine nitrous oxide emissions from cover crop treated rice paddy soils during fallow season

Energy Technology Data Exchange (ETDEWEB)

Pramanik, Prabhat, E-mail: prabhat2003@gmail.com; Haque, Md. Mozammel; Kim, Sang Yoon; Kim, Pil Joo, E-mail: pjkim@gnu.ac.kr

2014-08-15

Combination of leguminous and non-leguminous plant residues are preferably applied in rice paddy soils to increase the rate of organic matter mineralization and to improve plant growth. However, organic matter addition facilitates methane (CH{sub 4}) emission from rice paddy soil. Mineralization of organic nitrogen (N) increases NO{sub 3}–N concentrations in soil, which are precursors for the formation of nitrous oxide (N{sub 2}O). However, N{sub 2}O is a minor greenhouse gas emitted from submerged rice field and hence is not often considered during calculation of total global warming potential (GWP) during rice cultivation. The hypothesis of this study was that fluxes of N{sub 2}O emissions might be changed after removal of flooded water from rice field and the effect of cover crops on N{sub 2}O emissions in the fallow season might be interesting. However, the effects of N-rich plant residues on N{sub 2}O emission rates in the fallow season and its effect on annual GWP were not studied before. In this experiment, combination of barley (non-leguminous) and hairy vetch (leguminous) biomasses were applied at 9 Mg ha{sup −1} and 27 Mg ha{sup −1} rates in rice paddy soil. Cover crop application significantly increased CH{sub 4} emission flux while decreased N{sub 2}O emissions during rice cultivation. The lowest N{sub 2}O emission was observed in 27 Mg ha{sup −1} cover crop treated plots. Cover crop applications increased N contents in soil aggregates especially in smaller aggregates (< 250 μm), and that proportionately increased the N{sub 2}O emission potentials of these soil aggregates. Fluxes of N{sub 2}O emissions in the fallow season were influenced by the N{sub 2}O emission potentials of soil aggregates and followed opposite trends as those observed during rice cultivation. Therefore, it could be concluded that the doses of cover crop applications for rice cultivation should not be optimized considering only CH{sub 4}, but N{sub 2}O should also be

Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.

Science.gov (United States)

Song, Beng-Kah; Chuah, Tse-Seng; Tam, Sheh May; Olsen, Kenneth M

2014-10-01

Weedy rice is a close relative of domesticated rice (Oryza sativa) that competes aggressively with the crop and limits rice productivity worldwide. Most genetic studies of weedy rice have focused on populations in regions where no reproductively compatible wild Oryza species occur (North America, Europe and northern Asia). Here, we examined the population genetics of weedy rice in Malaysia, where wild rice (O. rufipogon) can be found growing in close proximity to cultivated and weedy rice. Using 375 accessions and a combined analysis of 24 neutral SSR loci and two rice domestication genes (sh4, controlling seed shattering, and Bh4, controlling hull colour), we addressed the following questions: (i) What is the relationship of Malaysian weedy rice to domesticated and wild rice, and to weedy rice strains in the USA? (ii) To what extent does the presence of O. rufipogon influence the genetic and phenotypic diversity of Malaysian weeds? (iii) What do the distributions of sh4 and Bh4 alleles and associated phenotypes reveal about the origin and contemporary evolution of Malaysian weedy rice? Our results reveal the following: independent evolutionary origins for Malaysian weeds and US strains, despite their very close phenotypic resemblance; wild-to-weed gene flow in Malaysian weed populations, including apparent adaptive introgression of seed-shattering alleles; and a prominent role for modern Malaysian cultivars in the origin and recent proliferation of Malaysian weeds. These findings suggest that the genetic complexity and adaptability of weedy crop relatives can be profoundly influenced by proximity to reproductively compatible wild and domesticated populations. © 2014 John Wiley & Sons Ltd.

Spot-5 multispectral image for 60-75 days of rice mapping

International Nuclear Information System (INIS)

Ramli, Mohd Amiruddin; Shariff, Abdul Rashid Mohamed; Bejo, Siti Khairunniza

2014-01-01

The objective of this study is to investigate the potential application of Spot-5 multispectral satellite data in monitoring rice cultivation areas in IADA (Integrated Agriculture Development Area) located at Kerian District, Perak Malaysia. Information of the rice cultivation areas is a global economic and environmental significance. Multi-spectral images acquired at high spatial resolution are an important tool, especially in agricultural applications. This paper addresses the relationship between normalize difference vegetation index (NDVI) and ancillary data acquired from Farmers Organization Authority (PPK) for 217 farmer's field in IADA Kerian. The results indicated that NDVI range 0.62 – 0.75 has a strong positive relationship with the ground survey area estimation with (r = 0.85; p <0.01) (r 2 = 0.722). The r 2 value of 0.722 indicated a statistically significant linear relationship between the rice area estimate using NDVI range 0.62 – 0.75 and on the ground surveyed data for 217 farmers' fields. The equation of unstandardized distribution can be described as Ŷ=0.0197+0.852x. The equation for standardized regression formula for this distribution is Ŷ= 0.850x. Thus, the results indicate that 60-75 days of rice area can be estimated from the following equation Ŷ=0.197+0.852x, where Ŷ is the predicted rice area and x is area calculated using NDVI range 0.62-0.75 in IADA Kerian Perak Malaysia. The results appear promising and rice mapping operations using SPOT-5 multispectral image data can be foreseen

Engineering properties of high and low altitude rice varieties from Kashmir valley at different processing levels

Directory of Open Access Journals (Sweden)

Raees Haq

2016-12-01

Full Text Available The knowledge of engineering properties such as gravimetrical properties (1,000 grain mass, bulk density, true density, and porosity, dimensional properties (length, width, thickness, aspect ratio, surface area, geometric mean diameter, and sphericity, frictional properties (angle of repose and coefficient of friction, and aerodynamic properties (drag coefficient and terminal velocity are necessary parameters related to machine design for different agricultural process operations such as handling, harvesting, threshing, cleaning, conveying, sorting, drying, processing, and storage. India is a vast country and contributes 20% of the total world’s rice production with cultivars ranging from the scented long grain ones to the sticky short grains. The Kashmir valley cultivates mainly short–medium bold varieties as temperate conditions in the valley are not suitable for the cultivation of long grain scented basmati rice. The most steps in cultivation and postharvest processing are manual and the aim of this work is to emphasize which variety sustains the processing steps to produce high yield quality rice for strengthening the economic conditions of the people.

Comparative study of endophytic and endophytic diazotrophic bacterial communities across rice landraces grown in the highlands of northern Thailand.

Science.gov (United States)

Rangjaroen, Chakrapong; Rerkasem, Benjavan; Teaumroong, Neung; Sungthong, Rungroch; Lumyong, Saisamorn

2014-01-01

Communities of bacterial endophytes within the rice landraces cultivated in the highlands of northern Thailand were studied using fingerprinting data of 16S rRNA and nifH genes profiling by polymerase chain reaction-denaturing gradient gel electrophoresis. The bacterial communities' richness, diversity index, evenness, and stability were varied depending on the plant tissues, stages of growth, and rice cultivars. These indices for the endophytic diazotrophic bacteria within the landrace rice Bue Wah Bo were significantly the lowest. The endophytic bacteria revealed greater diversity by cluster analysis with seven clusters compared to the endophytic diazotrophic bacteria (three clusters). Principal component analysis suggested that the endophytic bacteria showed that the community structures across the rice landraces had a higher stability than those of the endophytic diazotrophic bacteria. Uncultured bacteria were found dominantly in both bacterial communities, while higher generic varieties were observed in the endophytic diazotrophic bacterial community. These differences in bacterial communities might be influenced either by genetic variation in the rice landraces or the rice cultivation system, where the nitrogen input affects the endophytic diazotrophic bacterial community.

Good manufacturing practices production of a purification-free oral cholera vaccine expressed in transgenic rice plants.

Science.gov (United States)

Kashima, Koji; Yuki, Yoshikazu; Mejima, Mio; Kurokawa, Shiho; Suzuki, Yuji; Minakawa, Satomi; Takeyama, Natsumi; Fukuyama, Yoshiko; Azegami, Tatsuhiko; Tanimoto, Takeshi; Kuroda, Masaharu; Tamura, Minoru; Gomi, Yasuyuki; Kiyono, Hiroshi

2016-03-01

The first Good Manufacturing Practices production of a purification-free rice-based oral cholera vaccine (MucoRice-CTB) from transgenic plants in a closed cultivation system yielded a product meeting regulatory requirements. Despite our knowledge of their advantages, plant-based vaccines remain unavailable for human use in both developing and industrialized countries. A leading, practical obstacle to their widespread use is producing plant-based vaccines that meet governmental regulatory requirements. Here, we report the first production according to current Good Manufacturing Practices of a rice-based vaccine, the cholera vaccine MucoRice-CTB, at an academic institution. To this end, we established specifications and methods for the master seed bank (MSB) of MucoRice-CTB, which was previously generated as a selection-marker-free line, evaluated its propagation, and given that the stored seeds must be renewed periodically. The production of MucoRice-CTB incorporated a closed hydroponic system for cultivating the transgenic plants, to minimize variations in expression and quality during vaccine manufacture. This type of molecular farming factory can be operated year-round, generating three harvests annually, and is cost- and production-effective. Rice was polished to a ratio of 95 % and then powdered to produce the MucoRice-CTB drug substance, and the identity, potency, and safety of the MucoRice-CTB product met pre-established release requirements. The formulation of MucoRice-CTB made by fine-powdering of drug substance and packaged in an aluminum pouch is being evaluated in a physician-initiated phase I study.

Tocopherol and tocotrienol contents of different varieties of rice in Malaysia.

Science.gov (United States)

Shammugasamy, Balakrishnan; Ramakrishnan, Yogeshini; Ghazali, Hasanah M; Muhammad, Kharidah

2015-03-15

The present study examined the contents of tocopherols and tocotrienols and their distribution in 58 different varieties of whole rice cultivated in Malaysia. The analytical method used was saponification of samples followed by dispersive liquid-liquid microextraction and reverse phase high-performance liquid chromatography. The total vitamin E contents of different varieties of whole rice ranged between 19.36 and 63.29 mg kg⁻¹. Contents of vitamin E isomers varied among rice varieties both within and between grain color groups. Black-pigmented rice showed significantly higher mean contents of α-tocopherol, β-tocopherol and α-tocotrienol than non-pigmented rice and red-pigmented rice. Red-pigmented rice had significantly lower mean contents of γ-tocotrienol and total vitamin E than non-pigmented rice. The mean contents of δ-tocotrienol and total vitamin E in non-pigmented rice, however, were similar to those in black-pigmented rice. γ-Tocotrienol was the predominant form of vitamin E isomer in all analyzed varieties. The Pearson correlations among vitamin E isomers and total vitamin E content of whole rice were also studied. This study provides information on vitamin E content of different rice varieties that would be beneficial for decision making in genetic breeding of bioactive compound-rich rice varieties. © 2014 Society of Chemical Industry.

Gene interaction at seed-awning loci in the genetic background of wild rice.

Science.gov (United States)

Ikemoto, Mai; Otsuka, Mitsuharu; Thanh, Pham Thien; Phan, Phuong Dang Thai; Ishikawa, Ryo; Ishii, Takashige

2017-09-12

Seed awning is one of the important traits for successful propagation in wild rice. During the domestication of rice by ancient humans, plants with awnless seeds may have been selected because long awns hindered collection and handling activities. To investigate domestication of awnless rice, QTL analysis for seed awning was first carried out using backcross recombinant inbred lines between Oryza sativa Nipponbare (recurrent parent) and O. rufipogon W630 (donor parent). Two strong QTLs were detected in the same regions as known major seed-awning loci, An-1 and RAE2. Subsequent causal mutation surveying and fine mapping confirmed that O. rufipogon W630 has functional alleles at both loci. The gene effects and interactions at these loci were examined using two backcross populations with reciprocal genetic backgrounds of O. sativa Nipponbare and O. rufipogon W630. As awn length in wild rice varied among seeds even in the same plant, awn length was measured based on spikelet position. In the genetic background of cultivated rice, the wild alleles at An-1 and RAE2 had awning effects, and plants having both wild homozygous alleles produced awns whose length was about 70% of those of the wild parent. On the other hand, in the genetic background of wild rice, the substitution of cultivated alleles at An-1 and RAE2 contributed little to awn length reduction. These results indicate that the domestication process of awnless seeds was complicated because many genes are involved in awn formation in wild rice.

Interactions of rice (Oryza sativa L.) and PAH-degrading bacteria (Acinetobacter sp.) on enhanced dissipation of spiked phenanthrene and pyrene in waterlogged soil.

Science.gov (United States)

Gao, Y; Yu, X Z; Wu, S C; Cheung, K C; Tam, N F Y; Qian, P Y; Wong, M H

2006-12-15

The effects of cultivation of rice (Oryza sativa L.) and PAH-degrading bacteria (Acinetobacter sp.) separately, and in combination, on the dissipation of spiked phenanthrene and pyrene (0, 50+50, 100+100, 200+200 mg kg(-1)) in waterlogged soil were studied using pot trials. The population of introduced PAH-degrading bacteria remained at 10(5) CFU g(-1) dry soil after 20 days of treatment with Acinetobacter sp. only, but increased to 10(6) when planted with rice simultaneously. Shoot and root biomass of rice when grown alone was adversely affected by spiked PAHs, but significantly increased by 2-55% and 8-409%, respectively, when inoculated with Acinetobacter sp.. Phenanthrene and pyrene concentrations in roots ranged from 1-27 and 20-98 mg kg(-1), respectively, while their concentrations in shoots were generally lower than 0.2 mg kg(-1). The dissipation of phenanthrene was mainly due to abiotic loss as 70-78% phenanthrene was lost from the control soil at the end of 80 days, while removal of 86-87% phenanthrene had been achieved after 40 days in the treatment co-cultivated with Acinetobacter sp. and rice. Compared with the control where only 6-15% of pyrene was removed from soil, a much higher dissipation of pyrene (43-62%) was attained for the treatments co-cultivated with Acinetobacter sp. and rice at the end of 80 days. The results demonstrated that co-cultivation of rice and PAH-degrading bacteria may have a great potential to accelerate the bioremediation process of PAH-contaminated soil under waterlogged conditions.

Fungicide sensitivity in the wild rice pathogen Bipolaris oryzae

Science.gov (United States)

In recent years the occurrence of fungal brown spot, caused by Bipolaris oryzae has increased in cultivated wild rice (Zizania palustris) paddies in spite of the use of fungicides. To implement an efficient integrated disease management system, we are exploring whether field isolates have developed ...

A Survey of Myanmar Rice Production and Constraints

Directory of Open Access Journals (Sweden)

T.A.A. Naing

2008-10-01

Full Text Available Although modern high yielding varieties were introduced into Myanmar in the early 1980s, the national average of rice grain yield has stagnated at 3.2-3.4 t ha-1. To identify yield constraints, input intensities and the general practices of rice cultivation in Myanmar, a survey was conducted during the wet seasons of 2001 and 2002. A total of 98 farmers from five townships in Upper Myanmar and 16 in Lower Myanmar representing the most important areas of rice production were questioned on their management practices, yields, and perceived yield constraints over the previous four years. There was a recent decrease in the overall average rate of fertilizer application, an increase in the prevalence of rice-legume cropping systems, and only localized insect pest or disease problems. Additionally, rice yields were found to be higher in Upper Myanmar, likely the results of more suitable weather conditions, better irrigation, and ready market access. Furthermore, a number of critical factors affecting production are identified and possible solutions discussed.

Consumers' Preferences for a Local Food Product: The Case of a New Carnaroli Rice Product in Lombardy.

Science.gov (United States)

Ferrazzi, Giovanni; Ventura, Vera; Ratti, Sabrina; Balzaretti, Claudia

2017-04-13

Italy, with a cultivated area of 218,000 ha, is a European leader of rice production. In particular Lombardy region accounts for 40% of total rice cultivation and the case study in object accounts for 3.2% of Lombardy total rice area (2773 ha). Starting from 2012, through a regional project titled Buono, Sano e Vicino (good, healthy and close), Riso e Rane rural district supported local rice farmers in developing innovation in rice production and promoting an alternative supply chain to increase farmers bargaining power and promote new market strategies. More specifically, the innovation introduced is a new biotech method for variety certification, named DNA controllato (DNA tested). In the first step of the project, the attention was focused on an Italian traditional variety of rice: Carnaroli rice. Thanks to a commercial agreement with one of the most important large retailers in Lombardy, the Riso e Rane rice is offered for sale both in the traditional and wholegrain version. In this context, this work aims to evaluate the determinants of consumer's quality perception of this product, through a preference study of the commercial rice package. Preliminary results reveal that consumers perceive information about origin, local food-system and tradition more easily than DNA tested certification. In conclusion, this work contributes to evaluate the role of bio economy applications to the food sector and offers new insights for the debate about the relationships between tradition and innovation.

Consumers’ preferences for a local food product: the case of a new Carnaroli rice product in Lombardy

Directory of Open Access Journals (Sweden)

Giovanni Ferrazzi

2017-04-01

Full Text Available Italy, with a cultivated area of 218,000 ha, is a European leader of rice production. In particular Lombardy region accounts for 40% of total rice cultivation and the case study in object accounts for 3.2% of Lombardy total rice area (2773 ha. Starting from 2012, through a regional project titled Buono, Sano e Vicino (good, healthy and close, Riso e Rane rural district supported local rice farmers in developing innovation in rice production and promoting an alternative supply chain to increase farmers bargaining power and promote new market strategies. More specifically, the innovation introduced is a new biotech method for variety certification, named DNA controllato (DNA tested. In the first step of the project, the attention was focused on an Italian traditional variety of rice: Carnaroli rice. Thanks to a commercial agreement with one of the most important large retailers in Lombardy, the Riso e Rane rice is offered for sale both in the traditional and wholegrain version. In this context, this work aims to evaluate the determinants of consumer’s quality perception of this product, through a preference study of the commercial rice package. Preliminary results reveal that consumers perceive information about origin, local food-system and tradition more easily than DNA tested certification. In conclusion, this work contributes to evaluate the role of bio economy applications to the food sector and offers new insights for the debate about the relationships between tradition and innovation.

Human exposure to mercury in a compact fluorescent lamp manufacturing area: By food (rice and fish) consumption and occupational exposure

International Nuclear Information System (INIS)

Liang, Peng; Feng, Xinbin; Zhang, Chan; Zhang, Jin; Cao, Yucheng; You, Qiongzhi; Leung, Anna Oi Wah; Wong, Ming-Hung; Wu, Sheng-Chun

2015-01-01

To investigate human Hg exposure by food consumption and occupation exposure in a compact fluorescent lamp (CFL) manufacturing area, human hair and rice samples were collected from Gaohong town, Zhejiang Province, China. The mean values of total mercury (THg) and methylmercury (MeHg) concentrations in local cultivated rice samples were significantly higher than in commercial rice samples which indicated that CFL manufacturing activities resulted in Hg accumulation in local rice samples. For all of the study participants, significantly higher THg concentrations in human hair were observed in CFL workers compared with other residents. In comparison, MeHg concentrations in human hair of residents whose diet consisted of local cultivated rice were significantly higher than those who consumed commercial rice. These results demonstrated that CFL manufacturing activities resulted in THg accumulation in the hair of CFL workers. However, MeHg in hair were mainly affected by the sources of rice of the residents. - Highlights: • Rice samples were contaminated by Compact fluorescent lamp (CFL) manufacturing. • CFL manufacturing lead to THg accumulation in human hair. • MeHg in human hair were mainly affected by the sources of rice. • MeHg intake from fish consumption was lower than that from rice consumption. • PDI of MeHg by food consumption was below the guidelines for public health concern. - CFL manufacturing activities result in Hg accumulation in local rice samples and hair of CFL workers. However, MeHg in hair were mainly affected by sources of rice

Study on the Long Term Effects of Radiation on Irradiated Manawthukha Rice Grain (Mahsuri-M)

International Nuclear Information System (INIS)

Aye Aye Mar; Aye Aye Mon; Hnin Hnin Than; Ba Han; Tin Tin; Myint U

2008-03-01

Radioactivity monitoring of first and second generations Manawthukha paddy grain before cultivations were carried out. It was found out that there were no induced activity. Therefore it can be concluded that similarly it will be the same for third generation rice. The second generation rice was obtained from cultivation and harvesting of first generation [(i) non-irradiated (control), (ii) gamma-irradiated, (iii) neutron-one hour irradiated, (iv) neutron one-day irradiated rice]. Agronomical characteristics of three different types of generation of rice were studied. Morphological characteristics studies such as plant height, leaf width and panicle length,there was no large variation between three generations of rice. Phenotypes were found to be stable. Yield improvement was calculated. Nutritional values of rice generation were studied. They were (i) element analysis by different methods (NAA, EDXRF and AAS), vitamin determination and protein percent determination. There was no distinctive difference between first, second and third generation rice. In element analysis, eleven elements such as Mg, Mn, Na, K, Cl, Al, Ca, Fe, Zn, P and Cu were observed by NAA, AAS and EDXRF methods. Vitamin content (B1, B2) and protein content were also studied. Determination of amylose content, gel consistency and gelatinization temperature were involved in grain quality study. There was no large variation in three generations. Surface texture of first, second and third generation Manawthukha rice were studied by Scanning Electron Microscope (SEM). It was observed that the change of texture from generation to generation tend to become more distinctive in third generation.

Bulk density of an alfisol under cultivation systems in a long-term experiment evaluated with gamma ray computed tomography

International Nuclear Information System (INIS)

Bamberg, Adilson Luis; Silva, Thiago Rech da; Pauletto, Eloy Antonio; Pinto, Luiz Fernando Spinelli; Lima, Ana Claudia Rodrigues de; Timm, Luis Carlos

2009-01-01

The sustainability of irrigated rice (Oryza sativa L.) in lowland soils is based on the use of crop rotation and succession, which are essential for the control of red and black rice. The effects on the soil properties deserve studies, particularly on soil compaction. The objective of this study was to identify compacted layers in an albaqualf under different cultivation and tillage systems, by evaluating the soil bulk density (Ds) with Gamma Ray Computed Tomography (TC). The analysis was carried out in a long-term experiment, from 1985 to 2004, at an experimental station of EMBRAPA Clima Temperado, Capao do Leao, RS, Brazil, in a random block design with seven treatments, with four replications (T1 - one year rice with conventional tillage followed by two years fallow; T2 - continuous rice under conventional tillage; T4 - rice and soybean (Glycine Max L.) rotation under conventional tillage; T5 - rice, soybean and corn (Zea maize L.) rotation under conventional tillage; T6 - rice under no-tillage in the summer in succession to rye-grass (Lolium multiflorum L.) in the winter; T7 - rice under no-tillage and soybean under conventional tillage rotation; T8 - control: uncultivated soil). The Gamma Ray Computed Tomography method did not identify compacted soil layers under no tillage rice in succession to rye-grass; two fallow years in the irrigated rice production system did not prevent the formation of a compacted layer at the soil surface; and in the rice, soybean and corn rotation under conventional tillage two compacted layers were identified (0.0 to 1.5 cm and 11 to 14 cm), indicating that they may restrict the agricultural production in this cultivation system on Albaqualf soils. (author)

Elemental content of Vietnamese rice. Part 2. Multivariate data analysis.

Science.gov (United States)

Kokot, S; Phuong, T D

1999-04-01

Rice samples were obtained from the Red River region and some other parts of Vietnam as well as from Yanco, Australia. These samples were analysed for 14 elements (P, K, Mg, Ca, Mn, Zn, Fe, Cu, Al, Na, Ni, As, Mo and Cd) by ICP-AES, ICP-MS and FAAS as described in Part 1. This data matrix was then submitted to multivariate data analysis by principal component analysis to investigate the influences of environmental and crop cultivation variables on the elemental content of rice. Results revealed that geographical location, grain variety, seasons and soil conditions are the most likely significant factors causing changes in the elemental content between the rice samples. To assess rice quality according to its elemental content and physio-biological properties, a multicriteria decision making method (PROMETHEE) was applied. With the Vietnamese rice, the sticky rice appeared to contain somewhat higher levels of nutritionally significant elements such as P, K and Mg than the non-sticky rice. Also, rice samples grown during the wet season have better levels of nutritionally significant mineral elements than those of the dry season, but in general, the wet season seemed to provide better overall elemental and physio-biological rice quality.

GENE FLOW BETWEEN RED RICE AND CULTIVATED RICE ESTIMATED BY MICROSATELLITE MARKERS FLUXO GÊNICO ENTRE ARROZ VERMELHO E ARROZ CULTIVADO ESTIMADO POR MEIO DE MARCADORES MICROSSATÉLITES

Directory of Open Access Journals (Sweden)

Francisco , Moura Neto

2007-09-01

Full Text Available

The study aimed to evaluate the capacity of SSR markers to detect the gene flow between the red rice (RR and the cultivated rice (CR. SSR is currently used in plant genomic analysis due to the high information content, to be co-dominant, and based on the PCR reaction. The field experiment was organized in ten concentric circles, 5 m to 50 m apart from a central red rice plant, assumed as the pollen donor. One hundred twenty rice CR plants, cv. BR-Irga 409, were planted in the intersections of the concentric circles and the twelve radii. From 51 SSR markers, four were selected due to their capacity to detect the polymorphism between RR and CR, aiming to identify RR alleles in seeds produced by BR-Irga 409 plants. The maximum distance found for gene flow between RR and CR plants was 10 m from the RR plant. In theory, at 0.1% cross pollination rate, this distance can generate 4,710 hybrids between RR and CR. In the next generation, about 3,532 plants would produce exclusively rice grains with red color. The SSR markers were able to identify the gene flow between RR and CR; therefore, they can be useful to increase the precision of cross pollination rate estimates in rice, mainly if used with other methodologies (e.g., herbicide tolerant plants.

KEY WORDS: Cross pollination; microsatellite markers; Oryza sativa.

Este trabalho objetivou avaliar a capacidade de marcadores SSR em detectar a ocorrência de fluxo gênico entre o arroz vermelho (AV e o arroz cultivado (AC. Marcadores SSR são utilizados em análise genômica de plantas devido ao alto conteúdo informativo, serem co-dominantes e baseados na reação de PCR. O ensaio de campo foi realizado em dez círculos concêntricos de 5 m a 50 m de distância, a partir de uma planta AV central, que foi a fonte

Geographical information system based model of land suitability for good yield of rice in prachuap khiri khan province, thailand

International Nuclear Information System (INIS)

Hussain, W.; Sohaib, O.

2012-01-01

Correct assessment of land is a major issue in agricultural sector to use possible capability of any land, to raise cultivation and production of rice. Geographical Information System (GIS) provides broad techniques for suitable land classifications. This study is GIS based on land suitability analysis for rice farming in Prachuap Khiri Khan Province, Thailand, where the main livelihood of people is rice farming. This analysis was conducted considering the relationship of rice production with various data layers of elevation, slope, soil pH, rainfall, fertilizer use and land use. ArcView GIS 3.2 software is used to consider each layer according to related data to weight every coefficient, ranking techniques are used. It was based on determining correlation of rice production and these variables. This analysis showed a positive correlation with these variables in varying degrees depending on the magnitude and quality of these factors. By combining both data layers of GIS and weighted linear combination, various suitable lands have been developed for cultivation of rice. Integrated suitable assessment map and current land were compared to find suitable land in Prachuap Khiri Khan Province of Thailand. As a result of this comparison, we get a land which is suitable for optimum utilization for rice production in Prachuap Khiri Khan Province. (author)

Use of the p-SINE1-r2 in inferring evolutionary relationships of Thai rice varieties with AA genome

Directory of Open Access Journals (Sweden)

Preecha Prathepha

2006-01-01

Full Text Available In a previous study we described the prevalence and distribution in Thailand of the retroposon p- SINE1-r2, in the intron 10 of the waxy gene in cultivated and wild rice with the AA genome. In this study, additional varieties of rice were collected and sequencing was used to further characterize p-SINE1-r2. It was found that the length of the p-SINE1-r2 nucleotide sequences was about 125 bp, flanked by identical direct repeats of a 14 bp sequence. These sequences were compared and found to be similar to the sequences of p- SINE1-r2 found in Nipponbare, a rice strain discussed in a separate study. However, when compared the 48 DNA sequences identified in this study, much dissimilarity was found within the nucleotide sequences of p- SINE1-r2, in the form of base substitution mutations. Phylogenetic relationships inferred from the nucleotide sequences of these elements in cultivated rice (O. sativa and wild rice (O. nivara. It was found that rice accessions collected from the same geographical distribution have been placed in the same clade. The phylogenetic tree supports the origin and distribution of these rice strains.

Games Uniforms Unveiled

Institute of Scientific and Technical Information of China (English)

Linda

2008-01-01

The uniforms for Beijing Olympics’ workers, technical staff and volunteers have been unveiled to mark the 200-day countdown to the Games. The uniforms feature the key element of the clouds of promise and will be in three colors:red for Beijing Olympic Games Committee staff, blue

Introduction and Utilization of INGER Rice Germplasm in China

Institute of Scientific and Technical Information of China (English)

TANGSheng-xiang; WEIXing-hua; ELJavier

2004-01-01

The International Network for Genetic Evaluation of Rice (INGER) is a global partnership between international and national agricultural research institutions. INGER focuses on worldwide exchange, evaluation and utilization of improved varieties and elite breeding lines of rice. China has actively participated in the activities of INGER since 1980.During the pasted years, 26 500 INGER entries with diversity genetic background have been introduced and evaluated by Chinese scientists. Among of them, 37 commercial varieties directly from elite INGER entries and 27 rice hybrids using INGER lines as their restorer lines/donors have been released to farmers in China. About 1 900 INGER entries were indirectly utilized as cross parents or pest resistant donors in various national and provincial rice breeding programs. Based on the incomplete statistics, there were 14.5 million cumulated hectares planting these varieties and hybrids, from which 5.44 MT of increased rough rice has been received by farmers. INGER accelerates the transfer of adapted varieties and hybrids to farmers, and increases the diversity of rice germplasm in cultivation. Therefore, INGER cooperation has made great benefit both in economy and society in China.

Introduction and Utilization of INGER Rice Germplasm in China

Institute of Scientific and Technical Information of China (English)

TANG Sheng-xiang; WEI Xing-hua; E L Javier

2004-01-01

The International Network for Genetic Evaluation of Rice (INGER) is a global partnership between international and national agricultural research institutions. INGER focuses on worldwide exchange, evaluation and utilization of improved varieties and elite breeding lines of rice. China has actively participated in the activities of INGER since 1980.During the pasted years, 26 500 INGER entries with diversity genetic background have been introduced and evaluated by Chinese scientists. Among of them, 37 commercial varieties directly from elite INGER entries and 27 rice hybrids using INGER lines as their restorer lines/donors have been released to farmers in China. About 1 900 INGER entries were indirectly utilized as cross parents or pest resistant donors in various national and provincial rice breeding programs. Based on the incomplete statistics, there were 14.5million cumulated hectares planting these varieties and hybrids, from which 5.44 MT of increased rough rice has been received by farmers. INGER accelerates the transfer of adapted varieties and hybrids to farmers, and increases the diversity of rice germplasm in cultivation. Therefore, INGER cooperation has made great benefit both in economy and society in China.

Promising mutant variety of rice evolved through gamma irradiation

International Nuclear Information System (INIS)

Prasad, S.C.; Sinha, S.K.

1980-01-01

Rice occupies a major share in crop production in the Chotanagpur plateau of Bihar State. Uplands are roughly 40% in area where traditional low yielding rice, known as ''gora'' is cultivated as directly sown crop. Despite introduction of high yielding rice varieties, gora group of rices continue to prevail. It is therefore desired to increase the productivity level of the gora rice by mutation breeding. One such mutant known as ''gora mutant'' was obtained through gamma irradiation (10 kR) of variety Brown gora. The maturity of both parent and mutant remaining constant (ie. 100 days), there is some improvement in other characteristics like plant height, tillering capacity and kernel character. The parent being tall, shy in tillering and red bold kernel, the mutant has dwarfish characteristics, profuse tillering habit and white kernel with fine grains. The yielding capacity of mutant derivative is 30-40% higher than the parent Brown gora. This variety is in pre-release stage, and the farmers have taken great liking for it. (author)

Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.).

Science.gov (United States)

Zhou, Yi; Yang, Ping; Cui, Fenglei; Zhang, Fantao; Luo, Xiangdong; Xie, Jiankun

2016-01-01

Dongxiang wild rice (Oryza rufipogon Griff.) is the progenitor of cultivated rice (Oryza sativa L.), and is well known for its superior level of tolerance against cold, drought and diseases. To date, however, little is known about the salt-tolerant character of Dongxiang wild rice. To elucidate the molecular genetic mechanisms of salt-stress tolerance in Dongxiang wild rice, the Illumina HiSeq 2000 platform was used to analyze the transcriptome profiles of the leaves and roots at the seedling stage under salt stress compared with those under normal conditions. The analysis results for the sequencing data showed that 6,867 transcripts were differentially expressed in the leaves (2,216 up-regulated and 4,651 down-regulated) and 4,988 transcripts in the roots (3,105 up-regulated and 1,883 down-regulated). Among these differentially expressed genes, the detection of many transcription factor genes demonstrated that multiple regulatory pathways were involved in salt stress tolerance. In addition, the differentially expressed genes were compared with the previous RNA-Seq analysis of salt-stress responses in cultivated rice Nipponbare, indicating the possible specific molecular mechanisms of salt-stress responses for Dongxiang wild rice. A large number of the salt-inducible genes identified in this study were co-localized onto fine-mapped salt-tolerance-related quantitative trait loci, providing candidates for gene cloning and elucidation of molecular mechanisms responsible for salt-stress tolerance in rice.

Detection of DNA fingerprints of cultivated rice by hybridization with a human minisatellite DNA probe

International Nuclear Information System (INIS)

Dallas, J.F.

1988-01-01

A human minisatellite DNA probe detects several restriction fragment length polymorphisms in cultivars of Asian and African rice. Certain fragments appear to be inherited in a Mendelian fashion and may represent unlinked loci. The hybridization patterns appear to be cultivar-specific and largely unchanged after the regeneration of plants from tissue culture. The results suggest that these regions of the rice genome may be used to generate cultivar-specific DNA fingerprints. The demonstration of similarity between a human minisatellite sequence and polymorphic regions in the rice genome suggests that such regions also occur in the genomes of many other plant species

Azolla planting reduces methane emission and nitrogen fertilizer application in double rice cropping system in southern China

DEFF Research Database (Denmark)

Xu, Heshui; Zhu, Bo; Liu, Jingna

2017-01-01

Rice paddies are a major source of methane. How to reduce the methane emission in the paddy field without decreasing the yield has become a major concern of scientists, environmental groups, and agricultural policymakers worldwide. Azolla, used as a dual crop in rice cultivation, has multiple agr...

Agricultural residues and expanded clay in Oncidium baueri Lindl. orchid cultivation

Directory of Open Access Journals (Sweden)

Matheus Marchezi Mora

2015-02-01

Full Text Available For orchid cultivation in containers is essential to select the right substrate, since this will influence the quality of the final product, it serve as a support for the root system of the plants. This study aimed to evaluate different agricultural residues and expanded clay in Oncidium baueri Lindl. orchid cultivation. The plants were subjected to treatments: pinus husk + carbonized rice husk, pinus husk + coffee husk, pinus husk + fibered coconut, pecan nut husk, expanded clay, fibered coconut, coffee husk, carbonized rice husk, pinus husk. After eleven months of the experiment, the following variables were evaluated: plant height; largest pseudo-bulb diameter; number of buds; shoot fresh dry matter; the longest root length; number of roots; root fresh matter; root dry matter; and electric conductivity; pH and water retention capacity of the substrates. Except the expanded clay, the other substrates showed satisfactory results in one or more traits. Standing out among these substrates pinus husk + coffee husk and pine bark + fibered coconut, which favored the most vegetative and root characteristic of the orchid. The mixture of pinus husk + coffee husk and pinus husk + fibered coconut, provided the best results in vegetative and root growth of the orchid Oncidium baueri and the expanded clay did not show favorable results in the cultivation of this species.

Antagonism of rice phylloplane fungi against Cercospora oryzae

Science.gov (United States)

Mardani, A.; Hadiwiyono

2018-03-01

Narrow brown leaf spot (NBLS) caused by Cercospora oryzae Miyake is one of the important obstacle in rice cultivation that can decrease the productivity up to 40%. It has been known well that some phylloplane fungi are antagonistic to some leaf diseases. Phylloplane fungi of rice however haven’t been studied much and poorly understood as biological control agent of rice pathogen such C. oryzae. The research aimed to study the antagonism of some phylloplane fungi of rice against C. oryzae. At least 14 isolates of phylloplane fungi were collected which consisted of six pathogenic and eight nonpathogenic variants. All of nonpathogenic isolates were antagonistic against C. oryzae both in vitro and only one isolate could not inhibit the infection of the pathogen in vivo. Some isolates were identified as Aspergillus, Mucor, Penicillium, Fusarium, and Trichoderma. The isolate of Mucor and Fusarium could inhibit the highest growth of pathogen on potato dextrose medium that were at 36.0% and 35.5% respectively. Whereas on artificial inoculation on rice, some isolates such Penicillium and Fusarium could inhibit most effectively and were significantly different to Mencozeb application with dosage 5g L-1.

Mitigation options for methane emissions from rice fields in the Philippines

Energy Technology Data Exchange (ETDEWEB)

Lantin, R.S.; Buendia, L.V.; Wassmann, R. [International Rice Research Institute, Laguna (Philippines)] [and others

1996-12-31

The contribution of Philippine rice production to global methane emission and breakthroughs in methane emission studies conducted in the country are presented in this paper. A significant impact in the reduction of GHG emissions from agriculture can be achieved if methane emissions from ricefields can be abated. This study presents the contribution of Philippine rice cultivation to global methane emission and breakthroughs in methane emission studies in the country which address the issue of mitigation. Using the derived emission factors from local measurements, rice cultivation contributes 566.6 Gg of methane emission in the Philippines. This value is 62% of the total methane emitted from the agriculture sector. The emission factors employed which are 78% of the IPCC value for irrigated rice and 95% for rainfed rice were derived from measurements with an automatic system taken during the growth duration in the respective ecosystems. Plots drained for 2 weeks at midtillering and before harvest gave a significant reduction in methane emission as opposed to continuously flooded plots and plots drained before harvest. The cultivar Magat reduced methane emission by 50% as compared to the check variety IR72. The application of ammonium sulfate instead of urea reduced methane emission by 10% to 34%. Addition of 6 t ha{sup {minus}1} phosphogypsum in combination with urea reduced emission by 74% as opposed to plots applied with urea alone. It is also from the results of such measurements that abatement strategies are based as regards to modifying treatments such as water management, fertilization, and choice of rice variety. It is not easy to identify and recommend mitigation strategies that will fit a particular cropping system. However, the identified mitigation options provide focus for the abatement of methane emission from ricefields.

Agmatine Production by Aspergillus oryzae is Elevated by Low pH During Solid-State Cultivation.

Science.gov (United States)

Akasaka, Naoki; Kato, Saori; Kato, Saya; Hidese, Ryota; Wagu, Yutaka; Sakoda, Hisao; Fujiwara, Shinsuke

2018-05-25

Sake (rice wine) produced by multiple parallel fermentation (MPF) involving Aspergillus oryzae (strain RW) and Saccharomyces cerevisiae under solid-state cultivation conditions contained 3.5 mM agmatine, while that produced from enzymatically saccharified rice syrup by S. cerevisiae contained oryzae under solid-state cultivation (3.1 mM) but not under submerged cultivation, demonstrating that A. oryzae in solid-state culture produces agmatine. The effect of cultivation conditions on agmatine production was examined. Agmatine production was boosted at 30°C and reached the highest level (6.3 mM) at pH 5.3. The addition of l-lactic, succinic, and citric acids reduced the initial culture pH to 3.0, 3.5, and 3.2, respectively, resulting in further increase in agmatine accumulation (8.2, 8.7, and 8.3 mM, respectively). Homogenate from a solid-state culture exhibited a maximum l-arginine decarboxylase (ADC) activity (74 pmol min -1 μg -1 ) at pH 3.0 at 30°C; that from a submerged culture exhibited an extremely low activity (oryzae , even though A. oryzae lacks ADC orthologs and, instead, possesses four ornithine decarboxylases (ODC1-4). Recombinant ODC1 and ODC2 exhibited no ADC activity at acidic pH (pH 4.0>), suggesting that other decarboxylases or an unidentified ADC is involved in agmatine production. IMPORTANCE It has been speculated that, in general, fungi do not synthesize agmatine from l-arginine because they do not possess genes encoding for arginine decarboxylase. Numerous preclinical studies have shown that agmatine exerts pleiotropic effects on various molecular targets, leading to an improved quality of life. In the present study, we first demonstrated that l-arginine was a feasible substrate for agmatine production by the fungus Aspergillus oryzae RW. We observed that the productivity of agmatine by A. oryzae RW was elevated at low pH only during solid-state cultivation. A. oryzae is utilized in the production of various oriental fermented foods. The

Crop performance, nitrogen and water use in flooded and aerobic rice

NARCIS (Netherlands)

Belder, P.; Bouman, B.A.M.; Spiertz, J.H.J.; Peng, S.; Castañeda, A.R.; Visperas, R.M.

2005-01-01

Abstract Irrigated aerobic rice is a new system being developed for lowland areas with water shortage and for favorable upland areas with access to supplementary irrigation. It entails the cultivation of nutrient-responsive cultivars in nonsaturated soil with sufficient external inputs to reach

Comparative study of endophytic and endophytic diazotrophic bacterial communities across rice landraces grown in the highlands of northern Thailand

OpenAIRE

Rangjaroen, C.; Rerkasem, B.; Teaumroong, N.; Sungthong, R.; Lumyong, S.

2014-01-01

Communities of bacterial endophytes within the rice landraces cultivated in the highlands of northern Thailand were studied using fingerprinting data of 16S rRNA and nifH genes profiling by polymerase chain reaction-denaturing gradient gel electrophoresis. The bacterial communities' richness, diversity index, evenness, and stability were varied depending on the plant tissues, stages of growth, and rice cultivars. These indices for the endophytic diazotrophic bacteria within the landrace rice ...

Creating rigorous pathways to monetize methane and nitrous oxide emission reductions at small scale rice farms in three states of semi-arid peninsular India

Science.gov (United States)

Kritee, K.; Tiwari, R.; Nair, D.; Adhya, T. K.; Rudek, J.

2014-12-01

As a part of a joint undertaking by Environmental Defense Fund and the Fair Climate Network, we have measured reduction in methane and nitrous oxide emissions due to alternate "low carbon" rice cultivation practices for three ago-ecological zones in India for the past two years. Sampling for nitrous oxide and methane emissions was done on approximately 60-80% of the total number of days in a growing season and was based on modified GRACEnet protocol. In recognition of farmer's economic interest and global food security demands, we also measured the effect of rice cultivation practices on farm economics and yields. Our data from three agro-ecological zones for 2012-2014 suggest that, for semi-arid peninsular India, low-carbon rice cultivation practices offer large range of emission reduction potential (0.5-5 metric tons CO2e/acre/year). The regions with sandy soils (Alfisols) had high rates of nitrous oxide emissions even under baseline "flooded" rice cultivation regimes and, thus, the Tier 1 IPCC emissions factors grossly underestimate both the amount of nitrous oxide emission from conventional rice cultivation practices, and the extent to which it can be reduced through better fertilizer management. Also, the IPCC factors overestimate the methane emission reduction possible due to water management for rice paddies. Therefore, it is crucial to customize N and water management to each region such that yields and net GHG emission reduction are maximized. These practices also have the potential to decrease water use by 10-30% and improve long term soil health by optimizing organic matter and increasing water-holding capacity. In addition, through GPS based demarcation of farmer plots, recording baseline practices through extensive surveys, documenting the parameters required to aggregate and prove implementation of low carbon rice farming practices, and to model the GHG emission reduction over large scales, we have put forward a path for better monetization of GHG

Different farming and water regimes in Italian rice fields affect arbuscular mycorrhizal fungal soil communities.

Science.gov (United States)

Lumini, Erica; Vallino, Marta; Alguacil, Maria M; Romani, Marco; Bianciotto, Valeria

2011-07-01

Arbuscular mycorrhizal fungi (AMF) comprise one of the main components of soil microbiota in most agroecosystems. These obligate mutualistic symbionts colonize the roots of most plants, including crop plants. Many papers have indicated that different crop management practices could affect AMF communities and their root colonization. However, there is little knowledge available on the influence of conventional and low-input agriculture on root colonization and AMF molecular diversity in rice fields. Two different agroecosystems (continuous conventional high-input rice monocropping and organic farming with a five-year crop rotation) and two different water management regimes have been considered in this study. Both morphological and molecular analyses were performed. The soil mycorrhizal potential, estimated using clover trap cultures, was high and similar in the two agroecosystems. The diversity of the AMF community in the soil, calculated by means of PCR-RFLP (polymerase chain reaction-restriction fragment length polymorphism) and 18S rDNA sequencing on clover trap cultures roots, was higher for the organic cultivation. The rice roots cultivated in the conventional agrosystem or under permanent flooding showed no AMF colonization, while the rice plants grown under the organic agriculture system showed typical mycorrhization patterns. Considered together, our data suggest that a high-input cropping system and conventional flooding depress AMF colonization in rice roots and that organic managements could help maintain a higher diversity of AMF communities in soil.

The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice.

Science.gov (United States)

Vigueira, C C; Li, W; Olsen, K M

2013-08-01

The two independent domestication events in the genus Oryza that led to African and Asian rice offer an extremely useful system for studying the genetic basis of parallel evolution. This system is also characterized by parallel de-domestication events, with two genetically distinct weedy rice biotypes in the US derived from the Asian domesticate. One important trait that has been altered by rice domestication and de-domestication is hull colour. The wild progenitors of the two cultivated rice species have predominantly black-coloured hulls, as does one of the two U.S. weed biotypes; both cultivated species and one of the US weedy biotypes are characterized by straw-coloured hulls. Using Black hull 4 (Bh4) as a hull colour candidate gene, we examined DNA sequence variation at this locus to study the parallel evolution of hull colour variation in the domesticated and weedy rice system. We find that independent Bh4-coding mutations have arisen in African and Asian rice that are correlated with the straw hull phenotype, suggesting that the same gene is responsible for parallel trait evolution. For the U.S. weeds, Bh4 haplotype sequences support current hypotheses on the phylogenetic relationship between the two biotypes and domesticated Asian rice; straw hull weeds are most similar to indica crops, and black hull weeds are most similar to aus crops. Tests for selection indicate that Asian crops and straw hull weeds deviate from neutrality at this gene, suggesting possible selection on Bh4 during both rice domestication and de-domestication. © 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology.

Modeling methane emission from rice paddies with various agricultural practices

Science.gov (United States)

Huang, Yao; Zhang, Wen; Zheng, Xunhua; Li, Jin; Yu, Yongqiang

2004-04-01

Several models have been developed over the past decade to estimate CH4 emission from rice paddies. However, few models have been validated against field measurements with various parameters of soil, climate and agricultural practice. Thus reliability of the model's performance remains questionable particularly when extrapolating the model from site microscale to regional scale. In this paper, modification to the original model focuses on the effect of water regime on CH4 production/emission and the CH4 transport via bubbles. The modified model, named as CH4MOD, was then validated against a total of 94 field observations. These observations covered main rice cultivation regions from northern (Beijing, 40°30'N, 116°25'E) to southern China (Guangzhou, 23°08'N, 113°20'E), and from eastern (Hangzhou, 30°19'N, 120°12'E) to southwestern (Tuzu, 29°40'N, 103°50'E) China. Both single rice and double rice cultivations are distributed in these regions with different irrigation patterns and various types of organic matter incorporation. The observed seasonal amount of CH4 emission ranged from 3.1 to 761.7 kg C ha-1 with an average of 199.4 ± 187.3 kg C ha-1. In consonance with the observations, model simulations resulted in an average value of 224.6 ± 187.0 kg C ha-1, ranging from 13.9 to 824.3 kg C ha-1. Comparison between the computed and the observed seasonal CH4 emission yielded a correlation coefficient r2 of 0.84 with a slope of 0.92 and an intercept of 41.1 (n = 94, p < 0.001). It was concluded that the CH4MOD can reasonably simulate CH4 emissions from irrigated rice fields with a minimal number of inputs and parameters.

Studies on mosquitoes (Diptera: Culicidae and anthropicenvironment: 5- Breeding of Anopheles albitarsis in flooded rice fields in South-Eastern Brazil

Directory of Open Access Journals (Sweden)

Oswaldo Paulo Forattini

1994-10-01

Full Text Available Studies on breeding Anopheles albitarsis and association with rice growth in irrigated paddy fields were carried out during the rice cultivation cycle from December 1993 to March 1994. This period corresponded to the length of time of permanent paddy flooding. Breeding occurred in the early stage up until five weeks after transplantation when rice plant height was small. That inverse correlation may give potential direction to control measures.

Damage by Tibraca limbativentris Stål (Pentatomidae) to Upland Rice Cultivated in Amazon Rainforest Region (Brazil) at Different Growth Stages.

Science.gov (United States)

Krinski, D; Foerster, L A

2017-02-01

In this study, we evaluated the damage caused in the field by Tibraca limbativentris Stål adults at different levels of infestation (0, 1, 2, and 4 stink bugs) per three rice plants during three growth stages (V8, V13, and R4 stages) of upland rice cultivated in southwestern of Pará State, Amazon Rainforest region, Brazil. Heading time (panicle exertion) was affected by T. limbativentris infestations mainly in the vegetative stage and the whiteheads percentage in treatments ranged from 18.2 to 38%. The dead hearts percentages varied between 0 and 21.5%, and the mean number of primary branches (ramifications) ranged from 5.9 ± 0.4 to 12.3 ± 0.2. The number of empty spikelets was only affected in infestations with four insects/three plants, while the quantity of filled grains per panicle was affected only when infestations occurred during the vegetative stage. The total number of spikelets (filled + empty) per panicle decreased significantly in all phenological stages, and the percentage of damage ranged from 17 to 44% among treatments. Based on the proportion of damage observed, we suggest doubling the number of insects presently used as action threshold to 2 and 4 stink bugs per 15 stalks sampled for the vegetative stage, and of 1 or 2 stink bugs per 15 stalks sampled at the beginning of reproductive stage (R3/R4). Also, the field should be monitored during the entire vegetative stage, since most damage was observed in this phenological stage.

Use of rice seedlings to estimate uptake of radiocesium from soil to plants in Fukushima Prefecture

International Nuclear Information System (INIS)

Fujimura, Shigeto; Suzuki, Yasukazu; Ohno, Takeshi

2013-01-01

The uptake of radiocesium to plants from the soil is affected by many environmental factors, and it is difficult to determine the contribution of uptake among these factors. In addition, these environmental factors should be investigated independently for each field. The aim of this study was to develop a practical and simple method for the estimate of uptake of radiocesium from soil to plants. Rice seedlings were used to estimate the root uptake of radiocesium from seven different soils. To confirm that the seedlings were the effective indicator, the concentration of "1"3"7Cs in the seedlings was compared with that in brown rice and sunflower. The seedlings were cultivated for a week from germination in a phytotron and the concentrations of "1"3"7Cs in the seedlings above ground were determined. To obtain brown rice and sunflower, rice and sunflower were cultivated either in a pot (1/5000 a Wagner pot, 4000 cm"3) placed in a glasshouse or in a paddy field in Fukushima prefecture for two to four months. The concentration of "1"3"7Cs in the rice seedlings ranged from 150 to 1900 Bq kg"-"1, and that in brown rice and sunflower ranged from 2 to 880 Bq kg"-"1 and from 580 to 3900 Bq kg"-"1, respectively. The Spearman's rank correlation coefficient between the measured concentration of "1"3"7Cs in rice seedlings and the measured concentration of "1"3"7Cs in brown rice and sunflower was 1.0 (p < 0.001 and p = 0.09, respectively). This suggests that the use of rice seedlings in this experiment over a period of two weeks provides an effective indicator for the uptake of "1"3"7Cs from soil to plants over a longer period of time. (author)

Use of rice seedlings to estimate uptake of radiocesium from soil to plants in Fukushima Prefecture

International Nuclear Information System (INIS)

Fujimura, Shigeto; Suzuki, Yasukazu; Ohno, Takeshi

2012-01-01

The uptake of radiocesium to plants from the soil is affected by many environmental factors, and it is difficult to determine the contribution of uptake among these factors. In addition, these environmental factors should be investigated independently for each field. The aim of this study was to develop a practical and simple method for the estimate of uptake of radiocesium from soil to plants. Rice seedlings were used to estimate the root uptake of radiocesium from seven different soils. To confirm that the seedlings were the effective indicator, the concentration of 137 Cs in the seedlings was compared with that in brown rice and sunflower. The seedlings were cultivated for a week from germination in a phytotron and the concentrations of 137 Cs in the seedlings above ground were determined. To obtain brown rice and sunflower, rice and sunflower were cultivated either in a pot (1/5000 a Wagner pot, 4000 cm 3 ) placed in a glasshouse or in a paddy field in Fukushima prefecture for two to four months. The concentration of 137 Cs in the rice seedlings ranged from 150 to 1900 Bq kg -1 , and that in brown rice and sunflower ranged from 2 to 880 Bq kg -1 and from 580 to 3900 Bq kg -1 , respectively. The Spearman's rank correlation coefficient between the measured concentration of 137 Cs in rice seedlings and the measured concentration of 137 Cs in brown rice and sunflower was 1.0 (p < 0.001 and p = 0.09, respectively). This suggests that the use of rice seedlings in this experiment over a period of two weeks provides an effective indicator for the uptake of 137 Cs from soil to plants over a longer period of time. (author)

Cultivation of Flammulina velutipesmushroom using various agro-residues as a fruiting substrate

Directory of Open Access Journals (Sweden)

Nooraishah Harith

2014-03-01

Full Text Available The objective of this work was to evaluate the feasibility of different agro-residues as a carbon source in the fruiting substrates of Flammulina velutipesmushroom and the effect of supplementation with the nitrogen sources spent brewer's yeast and rice bran. The following fruiting substrates were evaluated: rubber wood sawdust (SD, paddy straw (PS, palm empty fruit bunches (EFB, and palm-pressed fiber (PPF. Cultivation was done on each agro-residue, based on formulations consisting of two substrates at the ratios of 3:1, 1:1, and 1:3. Mycelial growth rate and basidiocarp yield were evaluated. The best fruiting substrates were PS+EFB (25:75, PS+PPF (50:50, and PPF (100, with biological efficiency of 185.09±36.98, 150.89±50.35, and 129.06±14.51%, respectively. No significant effects of supplementation with rice bran and spent yeast were observed on mycelial growth rate and biological efficiency. The cultivation of F. velutipes on oil palm wastes does not require additional nitrogen sources.

Transfer of technetium from soil to paddy and upland rice

International Nuclear Information System (INIS)

Yanagisawa, Kei; Muramatsu, Yasuyuki

1995-01-01

Soil-plant transfer factors (concentration ratio between the plant and soil) of technetium in paddy and upland rice plants were obtained from laboratory experiments. The transfer factor is one of the most important parameters for environmental radiation dose assessment. Technetium tracer ( 95m TcO 4 - ) was added to the soil prior to rice cultivation. The transfer factor of technetium for the hulled grains (brown rice) of paddy rice (≤0.0002) was much lower than for that of upland rice (0.021). The transfer factors for both types of hulled grains were much lower than in the leaves. The technetium decontamination rate from hulled grains by polishing was 34%, the percentage of the weight decrease being 12%. The concentration of technetium in the soil solution collected from the paddy rice soil (flooded conditions) decreased rapidly with time due to its adsorption on the soil. In the upland rice soil (non-flooded) solution, the decrease in the technetium concentration was fairly slow. The low transfer factors for the paddy rice plants could be explained by the immobilization of technetium in the flooded soil. The oxidation-reduction potentials (Eh) in the flooded soil decreased rapidly with time. We conclude that technetium tracer added as TcO 4 - to flooded soil is readily transformed to an insoluble form (e.g.TcO 2 ) under the reducing conditions provided by flooding. (author)

Proteomics of Rice Seed Germination

Directory of Open Access Journals (Sweden)

Dongli eHe

2013-07-01

Full Text Available Seed is a condensed form of plant. Under suitable environmental conditions, it can resume the metabolic activity from physiological quiescent status, and mobilize the reserves, biosynthesize new proteins, regenerate organelles and cell membrane, eventually protrude the radicle and enter into seedling establishment. So far, how these activities are regulated in a coordinated and sequential manner is largely unknown. With the availability of more and more genome sequence information and the development of mass spectrometry (MS technology, proteomics has been widely applied in analyzing the mechanisms of different biological processes, and proved to be very powerful. Regulation of rice seed germination is critical for rice cultivation. In recent years, a lot of proteomic studies have been conducted in exploring the gene expression regulation, reserves mobilization and metabolisms reactivation, which brings us new insights on the mechanisms of metabolism regulation during this process. Nevertheless, it also invokes a lot of questions. In this mini-review, we summarized the progress in the proteomic studies of rice seed germination. The current challenges and future perspectives were also discussed, which might be helpful for the following studies.

Chemical, Sensorial and Rheological Properties of a New Organic Rice Bran Beverage

Directory of Open Access Journals (Sweden)

Gerson Luis FACCIN

2009-09-01

Full Text Available Rice bran is a solid residue from rice polishing that is used in animal nutrition and rice oil production. Cultivation conditions with agro-toxics, lipids instability, and tendency for mycotoxin contamination restrict its application in human nutrition. Therefore, organic agriculture is an alternative to use the properties of rice bran. Rice bran beverage is a new cereal product from organic rice. This work presents the preliminary results of the chemical and rheological studies of a bath pasteurized rice bran beverage. Compared with integral defatted milk, soy extracts, and brown rice low-fat milk, the rice bran beverage studied in this work presents itself as an important source of minerals and unsaturated lipids. All essential amino acids were found in this product. Glutamic and aspartic acids were predominant. Bath pasteurization at boiling water temperature for 15 and 30 min was adequate for microbiological safety. Refrigeration storage for 20 days, evaluated by pH and acidity variations, was ideal for assessment of the beverage conservation time. The beverage viscosity was of the Newtonian standard behavior, and its viscosity during storage was not a good parameter to evaluate shelf life. Sensory preference tests showed positive perspectives for this new beverage.

Gene, protein and network of male sterility in rice

Directory of Open Access Journals (Sweden)

Wang eKun

2013-04-01

Full Text Available Rice is one of the most important model crop plants whose heterosis has been well exploited in commercial hybrid seed production via a variety of types of male sterile lines. Hybrid rice cultivation area is steadily expanding around the world, especially in Southern Asia. Characterization of genes and proteins related to male sterility aims to understand how and why the male sterility occurs, and which proteins are the key players for microspores abortion. Recently, a series of genes and proteins related to cytoplasmic male sterility, photoperiod sensitive male sterility, self-incompatibility and other types of microspores deterioration have been characterized through genetics or proteomics. Especially the latter, offers us a powerful and high throughput approach to discern the novel proteins involving in male-sterile pathways which may help us to breed artificial male-sterile system. This represents an alternative tool to meet the critical challenge of further development of hybrid rice. In this paper, we reviewed the recent developments in our understanding of male sterility in rice hybrid production across gene, protein and integrated network levels, and also, present a perspective on the engineering of male sterile lines for hybrid rice production.

Effects of alkaline and bioorganic amendments on cadmium, lead, zinc, and nutrient accumulation in brown rice and grain yield in acidic paddy fields contaminated with a mixture of heavy metals.

Science.gov (United States)

He, Huaidong; Tam, Nora F Y; Yao, Aijun; Qiu, Rongliang; Li, Wai Chin; Ye, Zhihong

2016-12-01

Paddy soils and rice (Oryza sativa L.) contaminated by mixed heavy metals have given rise to great concern. Field experiments were conducted over two cultivation seasons to study the effects of steel slag (SS), fly ash (FA), limestone (LS), bioorganic fertilizer (BF), and the combination of SS and BF (SSBF) on rice grain yield, Cd, Pb, and Zn and nutrient accumulation in brown rice, bioavailability of Cd, Pb, and Zn in soil as well as soil properties (pH and catalase), at two acidic paddy fields contaminated with mixed heavy metals (Cd, Pb, and Zn). Compared to the controls, SS, LS, and SSBF at both low and high additions significantly elevated soil pH over both cultivation seasons. The high treatments of SS and SSBF markedly increased grain yields, the accumulation of P and Ca in brown rice and soil catalase activities in the first cultivation season. The most striking result was from SS application (4.0 t ha -1 ) that consistently and significantly reduced the soil bioavailability of Cd, Pb, and Zn by 38.5-91.2 % and the concentrations of Cd and Pb in brown rice by 20.9-50.9 % in the two soils over both cultivation seasons. LS addition (4.0 t ha -1 ) also markedly reduced the bioavailable Cd, Pb, and Zn in soil and the Cd concentrations in brown rice. BF remobilized soil Cd and Pb leading to more accumulation of these metals in brown rice. The results showed that steel slag was most effective in the remediation of acidic paddy soils contaminated with mixed heavy metals.

Factors affecting the income from major crops in rice-wheat ecological zone

International Nuclear Information System (INIS)

Ashfaq, M.; Naseer, M.Z.; Hassan, S.

2008-01-01

Agriculture is an important sector of our economy. About twenty-two percent of national income and 44.8 percent of total employment is generated by this sector. About 66 percent of country's population is living in rural areas and is directly or indirectly linked with agriculture for their livelihood. It also supplies raw materials to industry. The rice-wheat zone of Punjab covers 1.1 million hectare, 72% of wheat is grown in rotation with rice. The main purpose of this paper was to determine the effect of different factors on the productivity and ultimately on income from of major crops (wheat, rice and sugar-cane) in rice-wheat ecological zone. The results show that for wheat crop, land preparation, use of fertilizer and chemicals, for Sugarcane crop, area under cultivation, fertilizer and chemical costs and for rice crop, applications of chemicals, irrigation and land holding were the main determinants of productivity and crop income. (author)

Early mixed farming of millet and rice 7800 years ago in the Middle Yellow River region, China.

Directory of Open Access Journals (Sweden)

Jianping Zhang

Full Text Available The Peiligang Culture (9000-7000 cal. yr BP in the Middle Yellow River region, North China, has long been considered representative of millet farming. It is still unclear, however, if broomcorn millet or foxtail millet was the first species domesticated during the Peiligang Culture. Furthermore, it is also unknown whether millet was cultivated singly or together with rice at the same period. In this study, phytolith analysis of samples from the Tanghu archaeological site reveals early crop information in the Middle Yellow River region, China. Our results show that broomcorn millet was the early dry farming species in the Peiligang Culture at 7800 cal. yr BP, while rice cultivation took place from 7800 to 4500 cal. yr BP. Our data provide new evidence of broomcorn millet and rice mixed farming at 7800 cal. yr BP in the Middle Yellow River region, which has implications for understanding the domestication process of the two crops, and the formation and continuance of the Ancient Yellow River Civilization.

In Situ Biodiesel Production from Fast-Growing and High Oil Content Chlorella pyrenoidosa in Rice Straw Hydrolysate

Science.gov (United States)

Li, Penglin; Miao, Xiaoling; Li, Rongxiu; Zhong, Jianjiang

2011-01-01

Rice straw hydrolysate was used as lignocellulose-based carbon source for Chlorella pyrenoidosa cultivation and the feasibility of in situ biodiesel production was investigated. 13.7 g/L sugar was obtained by enzymatic hydrolyzation of rice straw. Chlorella pyrenoidosa showed a rapid growth in the rice straw hydrolysate medium, the maximum biomass concentration of 2.83 g/L was obtained in only 48 hours. The lipid content of the cells reached as high as 56.3%. In situ transesterification was performed for biodiesel production. The optimized condition was 1 g algal powder, 6 mL n-hexane, and 4 mL methanol with 0.5 M sulfuric acid at the temperature of 90°C in 2-hour reaction time, under which over 99% methyl ester content and about 95% biodiesel yield were obtained. The results suggested that the method has great potential in the production of biofuels with lignocellulose as an alternative carbon source for microalgae cultivation. PMID:21318171

Optimizing the harvesting stage of rye as a green manure to maximize nutrient production and to minimize methane production in mono-rice paddies

NARCIS (Netherlands)

Kim, Sang Yun; Park, Chi Kyu; Gwon, Hyo Suk; Khan, Muhammed Israr; Kim, P.J.

2015-01-01

Rye (Secale cerealis) has been widely cultivated to improve soil quality in temperate paddies. However, its biomass incorporation can significantly increase greenhouse gas emissions, particularly the emission of methane (CH4), during rice cultivation. The chemical composition and productivity of

Genetic diversity of high performance cultivars of upland and irrigated Brazilian rice.

Science.gov (United States)

Coelho, G R C; Brondani, C; Hoffmann, L V; Valdisser, P A M R; Borba, T C O; Mendonça, J A; Rodrigues, L A; de Menezes, I P P

2017-09-21

The objective of this study was to analyze the diversity and discrimination of high-performance Brazilian rice cultivars using microsatellite markers. Twenty-nine rice cultivars belonging to EMBRAPA Arroz e Feijão germplasm bank in Brazil were genotyped by 24 SSR markers to establish their structure and genetic discrimination. It was demonstrated that the analyzed germplasm of rice presents an expressive and significant genetic diversity with low heterogeneity among the cultivars. All 29 cultivars were differentiated genetically, and were organized into two groups related to their upland and irrigated cultivation systems. These groups showed a high genetic differentiation, with greater diversity within the group that includes the cultivars for irrigated system. The genotyping data of these cultivars, with the morphological e phenotypical data, are valuable information to be used by rice breeding programs to develop new improved cultivars.

Exploiting Co-Benefits of Increased Rice Production and Reduced Greenhouse Gas Emission through Optimized Crop and Soil Management.

Directory of Open Access Journals (Sweden)

Ning An

Full Text Available Meeting the future food security challenge without further sacrificing environmental integrity requires transformative changes in managing the key biophysical determinants of increasing agronomic productivity and reducing the environmental footprint. Here, we focus on Chinese rice production and quantitatively address this concern by conducting 403 on-farm trials across diverse rice farming systems. Inherent soil productivity, management practices and rice farming type resulted in confounded and interactive effects on yield, yield gaps and greenhouse gas (GHG emissions (N2O, CH4 and CO2-equivalent with both trade-offs and compensating effects. Advances in nitrogen, water and crop management (Best Management Practices-BMPs helped closing existing yield gaps and resulted in a substantial reduction in CO2-equivalent emission of rice farming despite a tradeoff of increase N2O emission. However, inherent soil properties limited rice yields to a larger extent than previously known. Cultivating inherently better soil also led to lower GHG intensity (GHG emissions per unit yield. Neither adopting BMPs only nor improving soils with low or moderate productivity alone can adequately address the challenge of substantially increasing rice production while reducing the environmental footprint. A combination of both represents the most efficient strategy to harness the combined-benefits of enhanced production and mitigating climate change. Extrapolating from our farm data, this strategy could increase rice production in China by 18%, which would meet the demand for direct human consumption of rice by 2030. It would also reduce fertilizer nitrogen consumption by 22% and decrease CO2-equivalent emissions during the rice growing period by 7% compared with current farming practice continues. Benefits vary by rice-based cropping systems. Single rice systems have the largest food provision benefits due to its wider yield gap and total cultivated area, whereas double-rice

A global analysis of alternative tillage and crop establishment practices for economically and environmentally efficient rice production.

Science.gov (United States)

Chakraborty, Debashis; Ladha, Jagdish Kumar; Rana, Dharamvir Singh; Jat, Mangi Lal; Gathala, Mahesh Kumar; Yadav, Sudhir; Rao, Adusumilli Narayana; Ramesha, Mugadoli S; Raman, Anitha

2017-08-24

Alternative tillage and rice establishment options should aim at less water and labor to produce similar or improved yields compared with traditional puddled-transplanted rice cultivation. The relative performance of these practices in terms of yield, water input, and economics varies across rice-growing regions. A global meta and mixed model analysis was performed, using a dataset involving 323 on-station and 9 on-farm studies (a total of 3878 paired data), to evaluate the yield, water input, greenhouse gas emissions, and cost and net return with five major tillage/crop establishment options. Shifting from transplanting to direct-seeding was advantageous but the change from conventional to zero or reduced tillage reduced yields. Direct-seeded rice under wet tillage was the best alternative with yield advantages of 1.3-4.7% (p Direct-seeding under zero tillage was another potential alternative with high savings in water input and cost of cultivation, with no yield penalty. The alternative practices reduced methane emissions but increased nitrous oxide emissions. Soil texture plays a key role in relative yield advantages, and therefore refinement of the practice to suit a specific agro-ecosystem is needed.

Effects of Salt Stress on Germination and Early Seedling Growth of Some Kenyan Rice Cultivars

International Nuclear Information System (INIS)

Ochieng, C.A.; Onkware, A.O.

1999-01-01

Four rice cultivars (Basmati-217, BW-196, Sindano and Ita-310) were subjected to increasing substrate salinity (0-1.5 Sm -1 ECe), under both laboratory and soil experiments. The salt stress significantly (P -1 ECe) completely inhibited germination in potted soil, but not petri dish tests in the laboratory.It was concluded that the three rice cultivars are susceptible to even mild substrate salinity, and cannot be relied upon for cultivation in saline soils. There is a need to assess the response many of the rice cvv for resistance to salt stress, and, if possible isolate and develop high yielding, resistant cultivars

Testing climate-smart irrigation strategies to reduce methane emissions from rice fields

Science.gov (United States)

Runkle, B.; Suvocarev, K.; Reba, M. L.

2017-12-01

Approximately 11% of the global 308 Tg CH4 anthropogenic emissions are currently attributed to rice cultivation. In this study, the impact of water conservation practices on rice field CH4 emissions was evaluated in Arkansas, the leading state in US rice cultivation. While conserving water, the Alternate Wetting and Drying (AWD) irrigation practice can also reduce CH4 emissions through the deliberate, periodic introduction of aerobic conditions. Seasonal CH4emissions from a pair of adjacent, production-sized rice fields were estimated and compared during the 2015 to 2017 growing seasons using the eddy covariance method on each field. The fields were alternately treated with continuous flood (CF) and AWD irrigation. In 2015, the seasonal cumulative carbon losses by CH4 emission were 30.3 ± 6.3 and 141.9 ± 8.6 kg CH4-C ha-1 for the AWD and CF treatments, respectively. Data from 2016 and 2017 will be analyzed and shown within this presentation; an initial view demonstrates consistent findings to 2015. When accounting for differences in field conditions and soils, the AWD practice is attributable to a 36-51% reduction in seasonal emissions. The substantial decrease in CH4 emissions by AWD supports previous chamber-based research and offers strong evidence for the efficacy of AWD in reducing CH4 emissions in Arkansas rice production. The AWD practice has enabled the sale of credits for carbon offsets trading and this new market could encourage CH4 emissions reductions on a national scale. These eddy covariance towers are being placed into a regional perspective including crop and forest land in the three states comprising the Mississippi Delta: Arkansas, Mississippi, and Louisiana.

Efficacy of Chlorella pyrenoidosa and Scenedesmus abundans for Nutrient Removal in Rice Mill Effluent (Paddy Soaked Water).

Science.gov (United States)

Abinandan, S; Bhattacharya, Ribhu; Shanthakumar, S

2015-01-01

Microalgae are product of sustainable development owing to its ability to treat variety of wastewater effluents and thus produced biomass can serve as value added product for various commercial applications. This paper deals with the cultivation of microalgae species namely Chlorella pyrenoidosa and Scenedesmus abundans in rice mill effluent (i.e., paddy soaked water) for nutrient removal. In order to investigate the nutrient removal capability, microalgae are subjected to cultivation in both raw and autoclaved samples. The maximum phosphate removal by Scenedesmus abundans and Chlorella pyrenoidosa in raw sample was 98.3% and 97.6%, respectively, whereas, the removal of ammoniacal nitrogen by Scenedesmus abundans and Chlorella pyrenoidosa in raw sample was 92% and 90.3%, respectively. The growth (measured in terms of chlorophyll content) of Scenedesmus abundans and Chlorella pyrenoidosa in raw sample was 3.88 mg/l and 5.55 mg/l, respectively. The results indicate the suitability of microalgae cultivation in rice mill effluent treatment for nutrient removal.

Improving Lowland Rice (O. sativa L. cv. MR219 Plant Growth Variables, Nutrients Uptake, and Nutrients Recovery Using Crude Humic Substances

Directory of Open Access Journals (Sweden)

Perumal Palanivell

2015-01-01

Full Text Available High cation exchange capacity and organic matter content of crude humic substances from compost could be exploited to reduce ammonia loss from urea and to as well improve rice growth and soil chemical properties for efficient nutrients utilization in lowland rice cultivation. Close-dynamic air flow system was used to determine the effects of crude humic substances on ammonia volatilization. A pot experiment was conducted to determine the effects of crude humic substances on rice plant growth, nutrients uptake, nutrients recovery, and soil chemical properties using an acid soil mixed with three rates of crude humic substances (20, 40, and 60 g pot−1. Standard procedures were used to evaluate rice plant dry matter production, nutrients uptake, nutrients recovery, and soil chemical properties. Application of crude humic substances increased ammonia volatilization. However, the lowest rate of crude humic substances (20 g pot−1 significantly improved total dry matter, nutrients uptake, nutrients recovery, and soil nutrients availability compared with crude humic substances (40 and 60 g pot−1 and the normal fertilization. Apart from improving growth of rice plants, crude humic substances can be used to ameliorate acid soils in rice cultivation. The findings of this study are being validated in our ongoing field trials.

Improving Lowland Rice (O. sativa L. cv. MR219) Plant Growth Variables, Nutrients Uptake, and Nutrients Recovery Using Crude Humic Substances.

Science.gov (United States)

Palanivell, Perumal; Ahmed, Osumanu Haruna; Ab Majid, Nik Muhamad; Jalloh, Mohamadu Boyie; Susilawati, Kasim

2015-01-01

High cation exchange capacity and organic matter content of crude humic substances from compost could be exploited to reduce ammonia loss from urea and to as well improve rice growth and soil chemical properties for efficient nutrients utilization in lowland rice cultivation. Close-dynamic air flow system was used to determine the effects of crude humic substances on ammonia volatilization. A pot experiment was conducted to determine the effects of crude humic substances on rice plant growth, nutrients uptake, nutrients recovery, and soil chemical properties using an acid soil mixed with three rates of crude humic substances (20, 40, and 60 g pot(-1)). Standard procedures were used to evaluate rice plant dry matter production, nutrients uptake, nutrients recovery, and soil chemical properties. Application of crude humic substances increased ammonia volatilization. However, the lowest rate of crude humic substances (20 g pot(-1)) significantly improved total dry matter, nutrients uptake, nutrients recovery, and soil nutrients availability compared with crude humic substances (40 and 60 g pot(-1)) and the normal fertilization. Apart from improving growth of rice plants, crude humic substances can be used to ameliorate acid soils in rice cultivation. The findings of this study are being validated in our ongoing field trials.

Reverse-transcriptional gene expression of anammox and ammonia-oxidizing archaea and bacteria in soybean and rice paddy soils of Northeast China.

Science.gov (United States)

Wang, Jing; Dong, Hailiang; Wang, Weidong; Gu, Ji-Dong

2014-03-01

The relative gene expression of hydrazine oxidoreductase encoding gene (hzo) for anaerobic ammonium oxidizing bacteria (anammox) and ammonia monooxygenase encoding gene (amoA) for both ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in Sanjiang Plain soybean and rice paddy soils of Northeast China was investigated by using real-time reverse-transcriptional quantitative PCR. Metabolically active populations of anammox, AOA, and AOB in rice paddy soils were evident by the presence and successful quantification of hzo mRNA and amoA mRNA genes. The expression ratio of amoA gene for both AOA and AOB varied between soybean soils and different rice paddy soils while the expression of hzo gene for anammox was detectable only in rice paddy soils by showing a diverse relative expression ratio in each soil sample. Gene expression of both archaeal and bacterial amoA genes in rice paddy soils differed among the three sampling depths, but that of hzo was not. Both archaeal and bacterial amoA genes showed an increase trend of expression level with continuation of rice paddy cultivation, but the low expression ratio of hzo gene indicated a relatively small contribution of anammox in overall removal of inorganic nitrogen through N2 even under anoxic and high nitrogen input in agriculture. Bacterial amoA gene from two soybean fields and three rice paddy fields were also analyzed for community composition by denaturing gradient gel electrophoresis fingerprint. Community shift was observed between soybean and paddy fields and within each of them. The consistent occurrence of three bands 5, 6, and 7 in all samples showed their high adaptability for both arid cultivation and continuous rice paddy cultivation. Our data suggest that AOA and AOB are playing a more important role in nitrogen transformation in agricultural soils in oxic or anoxic environment and anammox bacteria may also contribute but in a less extent to N transformation in these agricultural soils

Less adaption of newly approved variety Basmati 515 among aromatic basmati rice varieties in Kallar Tract of Punjab, Pakistan

Directory of Open Access Journals (Sweden)

Muhammad Tahir Latif

2017-12-01

Full Text Available A field survey was conducted after harvesting of rice crop 2016 to identify the reasons for less adaption of aromatic rice variety Basmati 515. The rice growers adopting rice-wheat cropping pattern in kallar tract were included in population of research study. Thirty male farmers from each selected district making a total of 180 respondent farmers were interviewed by convenience sampling method. The survey findings showed that the aromatic rice variety Basmati 515 was cultivated on only 2.7% rice area while maximum area (47.3% was under Super basmati variety. The comparison of Basmati 515 was made with Super basmati and PS 2 due to comparatively more cultivated area and declared yield potential of these varieties. Overall the farmers were applying under dosed phosphorus fertilizer (DAP as 0.25, 0.20 and 0.22 bag ha-1 respectively for basmati 515, super basmati and PS-2 varieties. The descriptive analysis showed that the less adaptability of basmati 515 was due to less yield and more attacks of borer (11%, BLB (10% and leaf roller (3.25% in comparison to other aromatic and fine rice varieties. Similarly maximum lodging (16% was recorded on basmati 515. Maximum yield was estimated for PS 2 variety (4.7 t ha-1 followed by super basmati (4.0 t ha-1 and basmati 515 (3.78 t ha-1. The market price of super basmati was still higher due to its natural aroma, long & thin grain and export demand. The research institutes should focus for development of new aromatic high yielding and more qualitative rice varieties to increase the rice production and export.

An automatic approach for rice mapping in temperate region using time series of MODIS imagery: first results for Mediterranean environment

Science.gov (United States)

Boschetti, M.; Nelson, A.; Manfrom, G.; Brivio, P. A.

2012-04-01

Timely and accurate information on crop typology and status are required to support suitable action to better manage agriculture production and reduce food insecurity. More specifically, regional crop masking and phenological information are important inputs for spatialized crop growth models for yield forecasting systems. Digital cartographic data available at global/regional scale, such as GLC2000, GLOBCOVER or MODIS land cover products (MOD12), are often not adequate for this crop modeling application. For this reason, there is a need to develop and test methods that can provide such information for specific cropsusing automated classification techniques.. In this framework we focused our analysis on the rice cultivation area detection due to the importance of this crop. Rice is a staple food for half of the world's population (FAO 2004). Over 90% of the world's rice is produced and consumed in Asia and the region is home to 70% of the world's poor, most of whom depend on rice for their livelihoods andor food security. Several initiatives are being promoted at the international level to provide maps of rice cultivated areas in South and South East Asia using different approaches available in literature for rice mapping in tropical regions. We contribute to these efforts by proposing an automatic method to detect rice cultivated areas in temperate regions exploiting MODIS 8-Day composite of Surface Reflectance at 500m spatial resolution (MOD09A1product). Temperate rice is cultivated worldwide in more than 20 countries covering around 16M ha for a total production of about 65M tons of paddy per year. The proposed method is based on a common approach available in literature that first identifies flood condition that can be related to rice agronomic practice and then checks for vegetation growth. The method presents innovative aspects related both to the flood detection, exploiting Short Wave Infrared spectral information, and to the crop grow monitoring analyzing

Nicotianamine, a novel enhancer of rice iron bioavailability to humans.

Directory of Open Access Journals (Sweden)

Luqing Zheng

Full Text Available BACKGROUND: Polished rice is a staple food for over 50% of the world's population, but contains little bioavailable iron (Fe to meet human needs. Thus, biofortifying the rice grain with novel promoters or enhancers of Fe utilization would be one of the most effective strategies to prevent the high prevalence of Fe deficiency and iron deficiency anemia in the developing world. METHODOLOGY/PRINCIPAL FINDINGS: We transformed an elite rice line cultivated in Southern China with the rice nicotianamine synthase gene (OsNAS1 fused to a rice glutelin promoter. Endosperm overexpression of OsNAS1 resulted in a significant increase in nicotianamine (NA concentrations in both unpolished and polished grain. Bioavailability of Fe from the high NA grain, as measured by ferritin synthesis in an in vitro Caco-2 cell model that simulates the human digestive system, was twice as much as that of the control line. When added at 1:1 molar ratio to ferrous Fe in the cell system, NA was twice as effective when compared to ascorbic acid (one of the most potent known enhancers of Fe bioavailability in promoting more ferritin synthesis. CONCLUSIONS: Our data demonstrated that NA is a novel and effective promoter of iron utilization. Biofortifying polished rice with this compound has great potential in combating global human iron deficiency in people dependent on rice for their sustenance.

EFFECT OF COVER CROPS ON SOIL ATTRIBUTES, PLANT NUTRITION, AND IRRIGATED TROPICAL RICE YIELD

Directory of Open Access Journals (Sweden)

ANDRE FROES DE BORJA REIS

2017-01-01

Full Text Available In flood plains, cover crops are able to alter soil properties and significantly affect rice nutrition and yield. The aims of this study were to determine soil properties, plant nutrition, and yield of tropical rice cultivated on flood plains after cover crop cultivation with conventional tillage (CT and no-tillage system (NTS at low and high nitrogen (N fertilization levels. The experimental design was a randomized block in a split-split-plot scheme with four replications. In the main plots were cover crops sunhemp (Crotalaria juncea and C. spectabilis, velvet bean (Mucuna aterrima, jackbean (Canavalia ensiformis, pigeon pea (Cajanus cajan, Japanese radish (Raphanus sativus, cowpea (Vigna unguiculata and a fallow field. In the subplots were the tillage systems (CT or NTS. The nitrogen fertilization levels in the sub-subplots were (10 kg N ha-1 and 45 kg N ha-1. All cover crops except Japanese radish significantly increased mineral soil nitrogen and nitrate concentrations. Sunhemp, velvet bean, and cowpea significantly increased soil ammonium content. The NTS provides higher mineral nitrogen and ammonium content than that by CT. Overall, cover crops provided higher levels of nutrients to rice plants in NTS than in CT. Cover crops provide greater yield than fallow treatments. Rice yield was higher in NTS than in CT, and greater at a higher rather than lower nitrogen fertilization level.

Spatio-Temporal Changes in the Rice Planting Area and Their Relationship to Climate Change in Northeast China: A Model-Based Analysis

NARCIS (Netherlands)

Xia, T.; Wu, W.; Zhou, Q.; Yu, Q.; Verburg, P.H.; Yang, P.; Lu, Z.F.; Tang, H.J.

2014-01-01

Rice is one of the most important grain crops in Northeast China (NEC) and its cultivation is sensitive to climate change. This study aimed to explore the spatio-temporal changes in the NEC rice planting area over the period of 1980-2010 and to analyze their relationship to climate change. To do so,

AFLP analysis of rice transformed with maize DNA by particle beam

International Nuclear Information System (INIS)

Ji Shengdong; Chen Peng; Wang Jiachuan; Yuan Zhao; Yue Chunhui; Wang Zhifeng

2009-01-01

Many stable heritable rice lines were obtained via five years agricultural selection, which were derived from rice (oryza stative Japonica) Yujing-6 transgened with large fraction DNA of Zhengdan-14 (zea mays L.) by particle beam method. 18 pairs optimum selective primers were got by screening from 64 pairs AFLP selective primers via experiment on two mutant lines, which could amplify many DNA fingerprints and also could amplify polymorphic bands and target bands, both in this two mutant lines. Then the two mutant lines and two controls were analyzed with AFLP, the results showed that many polymorphic bands (such as novel bands, target bands, missing bands) were found in mutant lines. The discrepancy in DNA level indicated that rice, transgened with large fraction DNA of Zhengdan-14 by particle beam, might be inserted maize DNA and inherited steadily in some degree. It also indicated that it was possible to cultivate novel rice variety transformed with wide DNA by particle beam. (authors)

Suitability analysis for rice growing sites using a multicriteria evaluation and GIS approach in great Mwea region, Kenya.

Science.gov (United States)

Kihoro, Joseph; Bosco, Njoroge J; Murage, Hunja

2013-12-01

Land suitability analysis is a prerequisite to achieving optimum utilization of the available land resources. Lack of knowledge on best combination of factors that suit production of rice has contributed to the low production. The aim of this study was to develop a suitability map for rice crop based on physical and climatic factors of production using a Multi-Criteria Evaluation (MCE) & GIS approach. The study was carried out in Kirinyaga, Embu and Mberee counties in Kenya. Biophysical variables of soil, climate and topography were considered for suitability analysis. All data were stored in ArcGIS 9.3 environment and the factor maps were generated. For MCE, Pairwise Comparison Matrix was applied and the suitable areas for rice crop were generated and graduated. The current land cover map of the area was developed from a scanned survey map of the rice growing areas. According to the present land cover map, the rice cultivated area was 13,369 ha. Finally, we overlaid the land cover map with the suitability map to identify variances between the present and potential land use. The crop-land evaluation results of the present study showed that, 75% of total area currently being used was under highly suitable areas and 25% was under moderately suitable areas. The results showed that the potential area for rice growing is 86,364 ha and out of this only 12% is under rice cultivation. This research provided information at local level that could be used by farmers to select cropping patterns and suitability.

The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa.

Science.gov (United States)

Wang, Diane R; Han, Rongkui; Wolfrum, Edward J; McCouch, Susan R

2017-07-01

Harnessing stem carbohydrate dynamics in grasses offers an opportunity to help meet future demands for plant-based food, fiber and fuel production, but requires a greater understanding of the genetic controls that govern the synthesis, interconversion and transport of such energy reserves. We map out a blueprint of the genetic architecture of rice (Oryza sativa) stem nonstructural carbohydrates (NSC) at two critical developmental time-points using a subpopulation-specific genome-wide association approach on two diverse germplasm panels followed by quantitative trait loci (QTL) mapping in a biparental population. Overall, 26 QTL are identified; three are detected in multiple panels and are associated with starch-at-maturity, sucrose-at-maturity and NSC-at-heading. They tag OsHXK6 (rice hexokinase), ISA2 (rice isoamylase) and a tandem array of sugar transporters. This study provides the foundation for more in-depth molecular investigation to validate candidate genes underlying rice stem NSC and informs future comparative studies in other agronomically vital grass species. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Analysis of profit inefficiency in rice production in Eastern and ...

African Journals Online (AJOL)

Rice is among the emerging crops in Uganda that play an important role both as a food and a cash crop. It ranks fourth among the cereal crops in area cultivated, occupying a total of 80 thousand hectares of land with an estimated annual output of 120,000 metric tonnes. The study analyses sources of technical and ...

Chemical Safety of Unpolished Nigerian Rice

Directory of Open Access Journals (Sweden)

Akinsola Francis Awopetu

2017-03-01

Full Text Available Levels of arsenic (As, lead (Pb, cadmium (Cd, calcium (Ca, chromium (Cr, potassium (K, sodium (Na, and zinc (Zn in locally cultivated rice consumed in Ondo and Ekiti States of Nigeria were investigated. The rice samples were obtained from six different rice-producing towns; Akure, Ondo, Ado, Igbemo, Ikole and Erinjiyan. The estimated dietary intake (EDI of these elements were determined and compared with the provisional tolerable daily intake (PTDI and dietary reference intake (DRI values for toxic and essential elements respectively. The measured mean levels of Pb, As, Cr, Cd, Zn, Na, Ca and K were 0.047 ± 0.007, 0.041 ± 0.004, 0.570 ± 0.032, 0.026 ± 0.003, 7.856 ± 0.659, 42.15 ± 0.191, 337.11 ± 0.315, and 2650.09 ± 0.337 µg/g respectively while the average EDI were 00.101 ± 0.042 µg/day, 0.088 ± 0.14µg/day, 1.234 ± 0.045 µg/day, 0.057 ± 0.002 µg/day, 0.017 ± 0.071 mg/day, 0.091 ± 0.013 mg/day, 0.73 ± 0.018 mg/day and 5.742 ± 0.337 mg/day respectively. The EDIs were not significantly higher than the reference values for the elements except Cr. Also the rice samples were not rich enough in sodium, calcium and potassium compared to the dietary reference intakes for these elements. It is recommended that rice diets should be supplemented with other food items such as meat, fruits and vegetables.

The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy.

Directory of Open Access Journals (Sweden)

Jolly Chatterjee

Full Text Available Rice contains genetically and ecologically diverse wild and cultivated species that show a wide variation in plant and leaf architecture. A systematic characterization of leaf anatomy is essential in understanding the dynamics behind such diversity. Therefore, leaf anatomies of 24 Oryza species spanning 11 genetically diverse rice genomes were studied in both lateral and longitudinal directions and possible evolutionary trends were examined. A significant inter-species variation in mesophyll cells, bundle sheath cells, and vein structure was observed, suggesting precise genetic control over these major rice leaf anatomical traits. Cellular dimensions, measured along three growth axes, were further combined proportionately to construct three-dimensional (3D leaf anatomy models to compare the relative size and orientation of the major cell types present in a fully expanded leaf. A reconstruction of the ancestral leaf state revealed that the following are the major characteristics of recently evolved rice species: fewer veins, larger and laterally elongated mesophyll cells, with an increase in total mesophyll area and in bundle sheath cell number. A huge diversity in leaf anatomy within wild and domesticated rice species has been portrayed in this study, on an evolutionary context, predicting a two-pronged evolutionary pathway leading to the 'sativa leaf type' that we see today in domesticated species.

Mapping paddy rice distribution using multi-temporal Landsat imagery in the Sanjiang Plain, northeast China

Science.gov (United States)

XIAO, Xiangming; DONG, Jinwei; QIN, Yuanwei; WANG, Zongming

2016-01-01

Information of paddy rice distribution is essential for food production and methane emission calculation. Phenology-based algorithms have been utilized in the mapping of paddy rice fields by identifying the unique flooding and seedling transplanting phases using multi-temporal moderate resolution (500 m to 1 km) images. In this study, we developed simple algorithms to identify paddy rice at a fine resolution at the regional scale using multi-temporal Landsat imagery. Sixteen Landsat images from 2010–2012 were used to generate the 30 m paddy rice map in the Sanjiang Plain, northeast China—one of the major paddy rice cultivation regions in China. Three vegetation indices, Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI), and Land Surface Water Index (LSWI), were used to identify rice fields during the flooding/transplanting and ripening phases. The user and producer accuracies of paddy rice on the resultant Landsat-based paddy rice map were 90% and 94%, respectively. The Landsat-based paddy rice map was an improvement over the paddy rice layer on the National Land Cover Dataset, which was generated through visual interpretation and digitalization on the fine-resolution images. The agricultural census data substantially underreported paddy rice area, raising serious concern about its use for studies on food security. PMID:27695637

Estimation of loci involved in non-shattering of seeds in early rice domestication.

Science.gov (United States)

Ishikawa, Ryo; Nishimura, Akinori; Htun, Than Myint; Nishioka, Ryo; Oka, Yumi; Tsujimura, Yuki; Inoue, Chizuru; Ishii, Takashige

2017-04-01

Rice (Oryza sativa L.) is widely cultivated around the world and is known to be domesticated from its wild form, O. rufipogon. A loss of seed shattering is one of the most obvious phenotypic changes selected for during rice domestication. Previously, three seed-shattering loci, qSH1, sh4, and qSH3 were reported to be involved in non-shattering of seeds of Japonica-type cultivated rice, O. sativa cv. Nipponbare. In this study, we focused on non-shattering characteristics of O. sativa Indica cv. IR36 having functional allele at qSH1. We produced backcross recombinant inbred lines having chromosomal segments from IR36 in the genetic background of wild rice, O. rufipogon W630. Histological and quantitative trait loci analyses of abscission layer formation were conducted. In the analysis of quantitative trait loci, a strong peak was observed close to sh4. We, nevertheless, found that some lines showed complete abscission layer formation despite carrying the IR36 allele at sh4, implying that non-shattering of seeds of IR36 could be regulated by the combination of mutations at sh4 and other seed-shattering loci. We also genotyped qSH3, a recently identified seed-shattering locus. Lines that have the IR36 alleles at sh4 and qSH3 showed inhibition of abscission layer formation but the degree of seed shattering was different from that of IR36. On the basis of these results, we estimated that non-shattering of seeds in early rice domestication involved mutations in at least three loci, and these genetic materials produced in this study may help to identify novel seed-shattering loci.

Biochar amendment reduced methylmercury accumulation in rice plants.

Science.gov (United States)

Shu, Rui; Wang, Yongjie; Zhong, Huan

2016-08-05

There is growing concern about methylmercury (MeHg) accumulation in rice grains and thus enhanced dietary exposure to MeHg in Asian countries. Here, we explored the possibility of reducing grain MeHg levels by biochar amendment, and the underlying mechanisms. Pot (i.e., rice cultivation in biochar amended soils) and batch experiments (i.e., incubation of amended soils under laboratory conditions) were carried out, to investigate MeHg dynamics (i.e., MeHg production, partitioning and phytoavailability in paddy soils, and MeHg uptake by rice) under biochar amendment (1-4% of soil mass). We demonstrate for the first time that biochar amendment could evidently reduce grain MeHg levels (49-92%). The declines could be attributed to the combined effects of: (1) increased soil MeHg concentrations, probably explained by the release of sulfate from biochar and thus enhanced microbial production of MeHg (e.g., by sulfate-reducing bacteria), (2) MeHg immobilization in soils, facilitated by the large surface areas and high organosulfur content of biochar, and (3) biodilution of MeHg in rice grains, due to the increased grain biomass under biochar amendment (35-79%). These observations together with mechanistic explanations improve understanding of MeHg dynamics in soil-rice systems, and support the possibility of reducing MeHg phytoaccumulation under biochar amendment. Copyright © 2016 Elsevier B.V. All rights reserved.

Authenticity of rice (Oryza sativa L.) geographical origin based on analysis of C, N, O and S stable isotope ratios: a preliminary case report in Korea, China and Philippine.

Science.gov (United States)

Chung, Ill-Min; Kim, Jae-Kwang; Prabakaran, Mayakrishnan; Yang, Jin-Hee; Kim, Seung-Hyun

2016-05-01

Although rice (Oryza sativa L.) is the third largest food crop, relatively fewer studies have been reported on rice geographical origin based on light element isotope ratios in comparison with other foods such as wine, beef, juice, oil and milk. Therefore this study tries to discriminate the geographical origin of the same rice cultivars grown in different Asian countries using the analysis of C, N, O and S stable isotope ratios and chemometrics. The δ(15) NAIR , δ(18) OVSMOW and δ(34) SVCDT values of brown rice were more markedly influenced by geographical origin than was the δ(13) CVPDB value. In particular, the combination of δ(18) OVSMOW and δ(34) SVCDT more efficiently discriminated rice geographical origin than did the remaining combinations. Principal component analysis (PCA) revealed a clear discrimination between different rice geographical origins but not between rice genotypes. In particular, the first components of PCA discriminated rice cultivated in the Philippines from rice cultivated in China and Korea. The present findings suggest that analysis of the light element isotope composition combined with chemometrics can be potentially applicable to discriminate rice geographical origin and also may provide a valuable insight into the control of improper or fraudulent labeling regarding the geographical origin of rice worldwide. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

Study on Analysis of Variance on the indigenous wild and cultivated rice species of Manipur Valley

Science.gov (United States)

Medhabati, K.; Rohinikumar, M.; Rajiv Das, K.; Henary, Ch.; Dikash, Th.

2012-10-01

The analysis of variance revealed considerable variation among the cultivars and the wild species for yield and other quantitative characters in both the years of investigation. The highly significant differences among the cultivars in year wise and pooled analysis of variance for all the 12 characters reveal that there are enough genetic variabilities for all the characters studied. The existence of genetic variability is of paramount importance for starting a judicious plant breeding programme. Since introduced high yielding rice cultivars usually do not perform well. Improvement of indigenous cultivars is a clear choice for increase of rice production. The genetic variability of 37 rice germplasms in 12 agronomic characters estimated in the present study can be used in breeding programme

A walk on the wild side: Oryza species as source for rice abiotic stress tolerance.

Science.gov (United States)

Menguer, Paloma Koprovski; Sperotto, Raul Antonio; Ricachenevsky, Felipe Klein

2017-01-01

Oryza sativa, the common cultivated rice, is one of the most important crops for human consumption, but production is increasingly threatened by abiotic stresses. Although many efforts have resulted in breeding rice cultivars that are relatively tolerant to their local environments, climate changes and population increase are expected to soon call for new, fast generation of stress tolerant rice germplasm, and current within-species rice diversity might not be enough to overcome such needs. The Oryza genus contains other 23 wild species, with only Oryza glaberrima being also domesticated. Rice domestication was performed with a narrow genetic diversity, and the other Oryza species are a virtually untapped genetic resource for rice stress tolerance improvement. Here we review the origin of domesticated Oryza sativa from wild progenitors, the ecological and genomic diversity of the Oryza genus, and the stress tolerance variation observed for wild Oryza species, including the genetic basis underlying the tolerance mechanisms found. The summary provided here is important to indicate how we should move forward to unlock the full potential of these germplasms for rice improvement.

Using Multi-Temporal Remote Sensing Data to Analyze the Spatio-Temporal Patterns of Dry Season Rice Production in Bangladesh

Science.gov (United States)

Shew, A. M.; Ghosh, A.

2017-10-01

Remote sensing in the optical domain is widely used in agricultural monitoring; however, such initiatives pose a challenge for developing countries due to a lack of high quality in situ information. Our proposed methodology could help developing countries bridge this gap by demonstrating the potential to quantify patterns of dry season rice production in Bangladesh. To analyze approximately 90,000 km2 of cultivated land in Bangladesh at 30 m spatial resolution, we used two decades of remote sensing data from the Landsat archive and Google Earth Engine (GEE), a cloud-based geospatial data analysis platform built on Google infrastructure and capable of processing petabyte-scale remote sensing data. We reconstructed the seasonal patterns of vegetation indices (VIs) for each pixel using a harmonic time series (HTS) model, which minimizes the effects of missing observations and noise. Next, we combined the seasonality information of VIs with our knowledge of rice cultivation systems in Bangladesh to delineate rice areas in the dry season, which are predominantly hybrid and High Yielding Varieties (HYV). Based on historical Landsat imagery, the harmonic time series of vegetation indices (HTS-VIs) model estimated 4.605 million ha, 3.519 million ha, and 4.021 million ha of rice production for Bangladesh in 2005, 2010, and 2015 respectively. Fine spatial scale information on HYV rice over the last 20 years will greatly improve our understanding of double-cropped rice systems, current status of production, and potential for HYV rice adoption in Bangladesh during the dry season.

Response of high yielding rice varieties to NaCl salinity in ...

African Journals Online (AJOL)

In order to find resistant varieties and study the reaction of some newly released high yielding varieties to different levels of salinity of irrigation water an experiment was conducted at the Rice Research Institute of Iran-Amol station in a greenhouse. Eight varieties, cultivated in pots, were tested with three levels of salinity (2, ...

Methane Emissions and Microbial Communities as Influenced by Dual Cropping of Azolla along with Early Rice

Science.gov (United States)

Liu, Jingna; Xu, Heshui; Jiang, Ying; Zhang, Kai; Hu, Yuegao; Zeng, Zhaohai

2017-01-01

Azolla caroliniana Willd. is widely used as a green manure accompanying rice, but its ecological importance remains unclear, except for its ability to fix nitrogen in association with cyanobacteria. To investigate the impacts of Azolla cultivation on methane emissions and environmental variables in paddy fields, we performed this study on the plain of Dongting Lake, China, in 2014. The results showed that the dual cropping of Azolla significantly suppressed the methane emissions from paddies, likely due to the increase in redox potential in the root region and dissolved oxygen concentration at the soil-water interface. Furthermore, the floodwater pH decreased in association with Azolla cultivation, which is also a factor significantly correlated with the decrease in methane emissions. An increase in methanotrophic bacteria population (pmoA gene copies) and a reduction in methanogenic archaea (16S rRNA gene copies) were observed in association with Azolla growth. During rice cultivation period, dual cropping of Azolla also intensified increasing trend of 1/Simpson of methanogens and significantly decreased species richness (Chao 1) and species diversity (1/Simpson, 1/D) of methanotrophs. These results clearly demonstrate the suppression of CH4 emissions by culturing Azolla and show the environmental and microbial responses in paddy soil under Azolla cultivation.

Induction of bacterial blight resistance in elite Indian rice cultivars using gamma-rays and ethyl methanesulfonate

International Nuclear Information System (INIS)

Agrawal, P.K.; Gosal, S.S.; Sidhu, G.S.

2001-01-01

Rice is the most important cereal crop in the world feeding more than 50 percent of the human population. During the last 30 years, induced mutation breeding has played a significant role in rice breeding programmes. Rice mutants with higher yield, greater tolerance to diseases and pests and other agronomic qualities have been released for commercial cultivation in many countries. Bacterial blight (BB) caused by Xanthomonas oryzae pv. oryzae is the second important disease in Southeast Asia. In the Basmati field sometime the yield loss is up to 100%. Moreover, there is no resistance source available. In Basmati rice, which is known for its quality and aroma. Induction of bacterial blight resistance in Basmati will help in developing high yielding Basmati type cultivars without compromising the quality

Antimicrobial activity and mineral composition of shiitake mushrooms cultivated on agricultural waste

Directory of Open Access Journals (Sweden)

Kérley Braga Pereira Bento Casaril

2011-10-01

Full Text Available The antimicrobial activity and mineral composition of shiitake mushrooms were evaluated in four isolates of Lentinula edodes. Mushrooms were cultivated on artificial logs, based on eucalyptus sawdust enriched with 20% rice, wheat, or soybean bran, or combination of 10% of two of these supplements. The substrates were humidified with a 0.1% mate tea extract or water. Logs of Eucalyptus grandis were also used to cultivate the shiitake mushrooms. The antimicrobial activity of an aqueous extract, corresponding to 40 mg of mushroom dry matter, was in some cases, depending on the isolate, able to inhibit both Bacillus subtilis and Escherichia coli K-12, independent of substrate composition or the growth stage of the mushrooms. Nitrogen, phosphorus, potassium, magnesium and calcium concentrations varied according to the substrate on which the mushrooms were cultivated, being, generally, higher with cultivation on artificial rather than natural eucalyptus logs. It could be concluded that, in addition to the fungal isolate, substrate composition and, processing methods must be considered during the production of antimicrobial substance(s as well as in the mushroom nutritional composition.

Mapping rice areas of South Asia using MODIS multitemporal data

Science.gov (United States)

Gumma, Murali Krishna; Nelson, Andrew; Thenkabail, Prasad S.; Singh, Amrendra N.

2011-01-01

Our goal is to map the rice areas of six South Asian countries using moderate-resolution imaging spectroradiometer (MODIS) time-series data for the time period 2000 to 2001. South Asia accounts for almost 40% of the world's harvested rice area and is also home to 74% of the population that lives on less than $2.00 a day. The population of the region is growing faster than its ability to produce rice. Thus, accurate and timely assessment of where and how rice is cultivated is important to craft food security and poverty alleviation strategies. We used a time series of eight-day, 500-m spatial resolution composite images from the MODIS sensor to produce rice maps and rice characteristics (e.g., intensity of cropping, cropping calendar) taking data for the years 2000 to 2001 and by adopting a suite of methods that include spectral matching techniques, decision trees, and ideal temporal profile data banks to rapidly identify and classify rice areas over large spatial extents. These methods are used in conjunction with ancillary spatial data sets (e.g., elevation, precipitation), national statistics, and maps, and a large volume of field-plot data. The resulting rice maps and statistics are compared against a subset of independent field-plot points and the best available subnational statistics on rice areas for the main crop growing season (kharif season). A fuzzy classification accuracy assessment for the 2000 to 2001 rice-map product, based on field-plot data, demonstrated accuracies from 67% to 100% for individual rice classes, with an overall accuracy of 80% for all classes. Most of the mixing was within rice classes. The derived physical rice area was highly correlated with the subnational statistics with R2 values of 97% at the district level and 99% at the state level for 2000 to 2001. These results suggest that the methods, approaches, algorithms, and data sets we used are ideal for rapid, accurate, and large-scale mapping of paddy rice as well as for generating

Biochar amendment reduced methylmercury accumulation in rice plants

Energy Technology Data Exchange (ETDEWEB)

Shu, Rui; Wang, Yongjie [School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing, Jiangsu Province, People’s Republic of China (China); Zhong, Huan, E-mail: zhonghuan@nju.edu.cn [School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing, Jiangsu Province, People’s Republic of China (China); Environmental and Life Sciences Program (EnLS), Trent University, Peterborough, Ontario (Canada)

2016-08-05

Highlights: • Biochar amendment could evidently reduce methylmercury (MeHg) levels in rice grain. • Biochar could enhance microbial production of MeHg, probably by providing sulfate. • Biochar could immobilize MeHg in soil, and reduce MeHg availability to rice plants. • Biochar amendment increased grain biomass, leading to biodilution of MeHg in grain. - Abstract: There is growing concern about methylmercury (MeHg) accumulation in rice grains and thus enhanced dietary exposure to MeHg in Asian countries. Here, we explored the possibility of reducing grain MeHg levels by biochar amendment, and the underlying mechanisms. Pot (i.e., rice cultivation in biochar amended soils) and batch experiments (i.e., incubation of amended soils under laboratory conditions) were carried out, to investigate MeHg dynamics (i.e., MeHg production, partitioning and phytoavailability in paddy soils, and MeHg uptake by rice) under biochar amendment (1–4% of soil mass). We demonstrate for the first time that biochar amendment could evidently reduce grain MeHg levels (49–92%). The declines could be attributed to the combined effects of: (1) increased soil MeHg concentrations, probably explained by the release of sulfate from biochar and thus enhanced microbial production of MeHg (e.g., by sulfate-reducing bacteria), (2) MeHg immobilization in soils, facilitated by the large surface areas and high organosulfur content of biochar, and (3) biodilution of MeHg in rice grains, due to the increased grain biomass under biochar amendment (35–79%). These observations together with mechanistic explanations improve understanding of MeHg dynamics in soil-rice systems, and support the possibility of reducing MeHg phytoaccumulation under biochar amendment.

Biochar amendment reduced methylmercury accumulation in rice plants

International Nuclear Information System (INIS)

Shu, Rui; Wang, Yongjie; Zhong, Huan

2016-01-01

Highlights: • Biochar amendment could evidently reduce methylmercury (MeHg) levels in rice grain. • Biochar could enhance microbial production of MeHg, probably by providing sulfate. • Biochar could immobilize MeHg in soil, and reduce MeHg availability to rice plants. • Biochar amendment increased grain biomass, leading to biodilution of MeHg in grain. - Abstract: There is growing concern about methylmercury (MeHg) accumulation in rice grains and thus enhanced dietary exposure to MeHg in Asian countries. Here, we explored the possibility of reducing grain MeHg levels by biochar amendment, and the underlying mechanisms. Pot (i.e., rice cultivation in biochar amended soils) and batch experiments (i.e., incubation of amended soils under laboratory conditions) were carried out, to investigate MeHg dynamics (i.e., MeHg production, partitioning and phytoavailability in paddy soils, and MeHg uptake by rice) under biochar amendment (1–4% of soil mass). We demonstrate for the first time that biochar amendment could evidently reduce grain MeHg levels (49–92%). The declines could be attributed to the combined effects of: (1) increased soil MeHg concentrations, probably explained by the release of sulfate from biochar and thus enhanced microbial production of MeHg (e.g., by sulfate-reducing bacteria), (2) MeHg immobilization in soils, facilitated by the large surface areas and high organosulfur content of biochar, and (3) biodilution of MeHg in rice grains, due to the increased grain biomass under biochar amendment (35–79%). These observations together with mechanistic explanations improve understanding of MeHg dynamics in soil-rice systems, and support the possibility of reducing MeHg phytoaccumulation under biochar amendment.

Lord Shiva Statue Unveiled

CERN Multimedia

2004-01-01

On 18 June, CERN unveiled an unusual new landmark, a 2m tall statue of the Indian deity Lord Shiva. The Director-General and Dr. Kakodkar watch as Mr.Chandrasekhar signs the Guest Book. The statue is a gift from India, celebrating CERN's long association with India which started in the 1960's and continues strongly today. It was unveiled by the Director General, Dr Robert Aymar, His Excellency Mr K. M. Chandrasekhar, Ambassador (WTO-Geneva) and Dr Anil Kakodkar, Chairman of the Atomic Energy Commission and Secretary, Dept of Atomic Energy, India. In the Hindu religion, this form of the dancing Lord Shiva is known as the Nataraj and symbolises Shakti, or life force. As a plaque alongside the statue explains, the belief is that Lord Shiva danced the Universe into existence, motivates it, and will eventually extinguish it. Carl Sagan drew the metaphor between the cosmic dance of the Nataraj and the modern study of the 'cosmic dance' of subatomic particles. The statue was made in India. The original sculpture was...

The improvement of rice varieties for major pest and diseases resistance

International Nuclear Information System (INIS)

Sahi, I.; Silitonga, T.S.

1988-01-01

Since 1971, the rice breeding program in Indonesia has developed on intensive program to improve varieties for yield potential, resistancy to major pests and diseases, early maturity good grain and eating quality. In recent years, the attacks of insects and diseases are very severe in rice cultivation in Asia. Much of the losses were due to acontinuous planting or certain varieties. Between 1966 and 1973 tungro occured in epidemic proportions on separate occasions in Indonesia, Thailand, Nort East India, Bangladesh, and Philippine. Since 1973, investation of brown planthopper and green leafhopper several damaged rice crop in most parts of Indonesia. Presently, rice improvement are directed to develop high yielding rice varieties that are resistant to brown planthopper, ragged stunt virus, blast, green leafhopper, and gallmidge. Screening for pests and diseases are conducted in the laboratory as well as in the field. The adoption of those improved varieties by farmers has contributed greatly in our efforts to attain self sufficiency in rice production in Indonesia. GH 147 -M-40 krad-Pn-89 (irradiated Barito) showed resistant to brown planthopper biotype 1 and 2 and moderately resistant to biotype 3. Napa 40 krad-St-12 has resistant reaction to blast. (authors). 4 refs, 8 tabs

Engineering the lodging resistance mechanism of post-Green Revolution rice to meet future demands.

Science.gov (United States)

Hirano, Ko; Ordonio, Reynante Lacsamana; Matsuoka, Makoto

2017-01-01

Traditional breeding for high-yielding rice has been dependent on the widespread cultivation of gibberellin (GA)-deficient semi-dwarf varieties. Dwarfism lowers the "center of gravity" of the plant body, which increases resistance against lodging and enables plants to support high grain yield. Although this approach was successful in latter half of the 20th century in rice and wheat breeding, this may no longer be enough to sustain rice with even higher yields. This is because relying solely on the semi-dwarf trait is subject to certain limitations, making it necessary to use other important traits to reinforce it. In this review, we present an alternative approach to increase lodging resistance by improving the quality of the culm by identifying genes related to culm quality and introducing these genes into high-yielding rice cultivars through molecular breeding technique.

Application of the neutron gamma method to a study of water seepage under a rice plantation

International Nuclear Information System (INIS)

Puard, M.; Couchat, P.; Moutonnet, P.

1980-01-01

In order to determine the share of percolation in the pollution by pesticides (particularly Lindane) being carried down in the drainage water of rice plantations, an application of the neutron gamma method under rice cultivation in the Camargue is suggested. A preliminary laboratory study enabled a comparison to be made between deuteriated water (DHO) and tritiated water (THO) used as water tracers in the determination of the dispersive phenomena and retention in a column of saturated soil [fr

Microbial Species and Functional Diversity in Rice Rhizosphere of High-yield Special Ecological Areas

Directory of Open Access Journals (Sweden)

PAN Li-yuan

2016-11-01

Full Text Available Taoyuan, Yunnan Province is a special eco-site which keeps the highest yield records of rice cultivation in small planting areas. Soil microbial species and functional diversity were evaluated using cultivation method and BIOLOG ecoplates. The results showed that the microbial community of the high yield region was more abundant, and the total microbial population was 2 times of the control, furthermore, the areas belonged to the healthy "bacteria" soil, which was showed as bacteria > actinomycetes > fungi. Bacteria were the dominant populations in the rhizosphere of high yielding rice field, and the yield formation of rice was not correlated with the depth of soil layers. In order to obtain more species diversity information, Shannon diversity index H, Shannon evenness index E and Simpson index D were analyzed, and the results showed that microbial community diversity and evenness were not the main differences between the high and general yield areas. Then, the functional diversity of soil microbial community was investigated through the average well color development(AWCD and diversity index analyses. The results of AWCD analysis indicated that the metabolic activity of soil microbial community in high yield paddy soils were stronger than the control. Moreover, the difference range from large to small showed as tillering stage > harvest period > seedling period > rotation period, the stronger the rice growth, the greater the difference between the high yield region and the control. At tillering stage and harvest stage, due to the vigorous plant growth, the root exudates were rich, and the microbial communities of high yield paddy soils showed a strong metabolic activity and strong ability to use carbon sources. The results of Shannon, Simpson and McIntosh indices analysis indicated that common microbial species was not a key factor affecting the yield of rice. Tillering stage was a key period for the growth of high yield rice, and many

Can rice field channels contribute to biodiversity conservation in Southern Brazilian wetlands?

Directory of Open Access Journals (Sweden)

Leonardo Maltchik

2011-12-01

species in agroecosystems has attracted attention. Irrigation channels can improve habitats and offer conditions for freshwater species conservation. Two questions from biodiversity conservation point of view are: 1 Can the irrigated channels maintain a rich diversity of macrophytes, macroinvertebrates and amphibians over the cultivation cycle? 2 Do richness, abundance and composition of aquatic species change over the rice cultivation cycle? For this, a set of four rice field channels was randomly selected in Southern Brazilian wetlands. In each channel, six sample collection events were carried out over the rice cultivation cycle (June 2005 to June 2006. A total of 160 taxa were identified in irrigated channels, including 59 macrophyte species, 91 taxa of macroinvertebrate and 10 amphibian species. The richness and abundance of macrophytes, macroinvertebrates and amphibians did not change significantly over the rice cultivation cycle. However, the species composition of these groups in the irrigation channels varied between uncultivated and cultivated periods. Our results showed that the species diversity found in the irrigation channels, together with the permanence of water enables these man-made aquatic networks to function as important systems that can contribute to the conservation of biodiversity in regions where the wetlands were converted into rice fields. The conservation of the species in agriculture, such as rice field channels, may be an important alternative for biodiversity conservation in Southern Brazil, where more than 90% of wetland systems have already been lost and the remaining ones are still at high risk due to the expansion of rice production. Rev. Biol. Trop. 59 (4: 1895-1914. Epub 2011 December 01.

[Effects of mechanical transplanting of rice with controlled release bulk blending fertilizer on rice yield and soil fertility].

Science.gov (United States)

Zhang, Xuan; Ding, Jun-Shan; Liu, Yan-Ling; Gu, Yan; Han, Ke-Feng; Wu, Liang-Huan

2014-03-01

Abstract: A 2-year field experiment with a yellow-clay paddy soil in Zhejiang Province was conducted to study the effects of different planting measures combined with different fertilization practices on rice yield, soil nutrients, microbial biomass C and N and activities of urease, phosphatase, sucrase and hydrogen peroxidase at the maturity stage. Results showed that mechanical transplanting of rice with controlled release bulk blending (BB) fertilizer (BBMT) could achieve a significantly higher mean yield than traditional manual transplanting with traditional fertilizer (TFTM) and direct seeding with controlled release BB fertilizer (BBDS) by 16.3% and 27.0%, respectively. The yield by BBMT was similar to that by traditional manual transplanting with controlled release BB fertilizer (BBTM). Compared with TFTM, BBMT increased the contents of soil total-N, available N, available P and microbial biomass C, and the activities of urease, sucrase and hydrogen peroxidase by 21.5%, 13.6%, 41.2%, 27.1%, 50.0%, 22.5% and 46.2%, respectively. Therefore, BBMT, a simple high-efficiency rice cultivation method with use of a light-weighted mechanical transplanter, should be widely promoted and adopted.

Remote Sensing-Based Quantification of the Impact of Flash Flooding on the Rice Production: A Case Study over Northeastern Bangladesh.

Science.gov (United States)

Ahmed, M Razu; Rahaman, Khan Rubayet; Kok, Aaron; Hassan, Quazi K

2017-10-14

The northeastern region of Bangladesh often experiences flash flooding during the pre-harvesting period of the boro rice crop, which is the major cereal crop in the country. In this study, our objective was to delineate the impact of the 2017 flash flood (that initiated on 27 March 2017) on boro rice using multi-temporal Landsat-8 OLI and MODIS data. Initially, we opted to use Landsat-8 OLI data for mapping the damages; however, during and after the flooding event the acquisition of cloud free images were challenging. Thus, we used this data to map the cultivated boro rice acreage considering the planting to mature stages of the crop. Also, in order to map the extent of the damaged boro area, we utilized MODIS data as their 16-day composites provided cloud free information. Our results indicated that both the cultivated and damaged boro area estimates based on satellite data had strong relationships while compared to the ground-based estimates (i.e., r ² values approximately 0.92 for both cases, and RMSE of 18,374 and 9380 ha for cultivated and damaged areas, respectively). Finally, we believe that our study would be critical for planning and ensuring food security for the country.

The strategies of local farmers' water management and the eco-hydrological effects of irrigation-drainage engineering systems in world heritage of Honghe Hani Rice Terraces

Science.gov (United States)

Gao, Xuan

2017-04-01

Terraces are built in mountainous regions to provide larger area for cultivation,in which the hydrological and geomorphological processes are impacted by local farmers' water management strategies and are modified by manmade irrigation-drainage engineering systems.The Honghe Hani Rice Terraces is a 1300a history of traditional agricultural landscape that was inscribed in the 2013 World Heritage List.The local farmers had developed systematic water management strategies and built perfect irrigation-drainage engineering systems to adapt the local rainfall pattern and rice farming activities.Through field investigation,interviews,combined with Geographic Information Systems,Remote Sensing images and Global Positioning Systems technology,the water management strategies as well as the irrigation-drainage systems and their impacts on eco-hydrological process were studied,the results indicate:Firstly,the local people created and maintained an unique woodcarving allocating management system of irrigating water over hundreds years,which aids distributing water and natural nutrition to each terrace field evenly,and regularly according to cultivation schedule.Secondly,the management of local people play an essential role in effective irrigation-drainage engineering system.A ditch leader takes charge of managing the ditch of their village,keeping ample amount of irrigation water,repairing broken parts of ditches,dealing with unfair water using issues,and so on.Meanwhile,some traditional leaders of minority also take part in.Thus, this traditional way of irrigation-drainage engineering has bringed Hani people around 1300 years of rice harvest for its eco-hydrological effects.Lastly we discuss the future of Honghe Hani Rice Terraces,the traditional cultivation pattern has been influenced by the rapid development of modern civilization,in which some related changes such as the new equipment of county roads and plastic channels and the water overusing by tourism are not totally

Characterization of paralogous protein families in rice

Directory of Open Access Journals (Sweden)

Zhu Wei

2008-02-01

Full Text Available Abstract Background High gene numbers in plant genomes reflect polyploidy and major gene duplication events. Oryza sativa, cultivated rice, is a diploid monocotyledonous species with a ~390 Mb genome that has undergone segmental duplication of a substantial portion of its genome. This, coupled with other genetic events such as tandem duplications, has resulted in a substantial number of its genes, and resulting proteins, occurring in paralogous families. Results Using a computational pipeline that utilizes Pfam and novel protein domains, we characterized paralogous families in rice and compared these with paralogous families in the model dicotyledonous diploid species, Arabidopsis thaliana. Arabidopsis, which has undergone genome duplication as well, has a substantially smaller genome (~120 Mb and gene complement compared to rice. Overall, 53% and 68% of the non-transposable element-related rice and Arabidopsis proteins could be classified into paralogous protein families, respectively. Singleton and paralogous family genes differed substantially in their likelihood of encoding a protein of known or putative function; 26% and 66% of singleton genes compared to 73% and 96% of the paralogous family genes encode a known or putative protein in rice and Arabidopsis, respectively. Furthermore, a major skew in the distribution of specific gene function was observed; a total of 17 Gene Ontology categories in both rice and Arabidopsis were statistically significant in their differential distribution between paralogous family and singleton proteins. In contrast to mammalian organisms, we found that duplicated genes in rice and Arabidopsis tend to have more alternative splice forms. Using data from Massively Parallel Signature Sequencing, we show that a significant portion of the duplicated genes in rice show divergent expression although a correlation between sequence divergence and correlation of expression could be seen in very young genes. Conclusion

Using artificial neural network and satellite data to predict rice yield in Bangladesh

Science.gov (United States)

Akhand, Kawsar; Nizamuddin, Mohammad; Roytman, Leonid; Kogan, Felix; Goldberg, Mitch

2015-09-01

Rice production in Bangladesh is a crucial part of the national economy and providing about 70 percent of an average citizen's total calorie intake. The demand for rice is constantly rising as the new populations are added in every year in Bangladesh. Due to the increase in population, the cultivation land decreases. In addition, Bangladesh is faced with production constraints such as drought, flooding, salinity, lack of irrigation facilities and lack of modern technology. To maintain self sufficiency in rice, Bangladesh will have to continue to expand rice production by increasing yield at a rate that is at least equal to the population growth until the demand of rice has stabilized. Accurate rice yield prediction is one of the most important challenges in managing supply and demand of rice as well as decision making processes. Artificial Neural Network (ANN) is used to construct a model to predict Aus rice yield in Bangladesh. Advanced Very High Resolution Radiometer (AVHRR)-based remote sensing satellite data vegetation health (VH) indices (Vegetation Condition Index (VCI) and Temperature Condition Index (TCI) are used as input variables and official statistics of Aus rice yield is used as target variable for ANN prediction model. The result obtained with ANN method is encouraging and the error of prediction is less than 10%. Therefore, prediction can play an important role in planning and storing of sufficient rice to face in any future uncertainty.

Using NOAA/AVHRR based remote sensing data and PCR method for estimation of Aus rice yield in Bangladesh

Science.gov (United States)

Nizamuddin, Mohammad; Akhand, Kawsar; Roytman, Leonid; Kogan, Felix; Goldberg, Mitch

2015-06-01

Rice is a dominant food crop of Bangladesh accounting about 75 percent of agricultural land use for rice cultivation and currently Bangladesh is the world's fourth largest rice producing country. Rice provides about two-third of total calorie supply and about one-half of the agricultural GDP and one-sixth of the national income in Bangladesh. Aus is one of the main rice varieties in Bangladesh. Crop production, especially rice, the main food staple, is the most susceptible to climate change and variability. Any change in climate will, thus, increase uncertainty regarding rice production as climate is major cause year-to-year variability in rice productivity. This paper shows the application of remote sensing data for estimating Aus rice yield in Bangladesh using official statistics of rice yield with real time acquired satellite data from Advanced Very High Resolution Radiometer (AVHRR) sensor and Principal Component Regression (PCR) method was used to construct a model. The simulated result was compared with official agricultural statistics showing that the error of estimation of Aus rice yield was less than 10%. Remote sensing, therefore, is a valuable tool for estimating crop yields well in advance of harvest, and at a low cost.

Manejo de água e de fertilizante potássico na cultura de arroz irrigado Water and potassium fertilization management for irrigated rice cultivation

Directory of Open Access Journals (Sweden)

Alberto Baêta dos Santos

1999-04-01

Full Text Available O manejo da água de irrigação e as doses e épocas de aplicação de fertilizantes tornam-se aspectos de extrema importância no êxito do aproveitamento das várzeas para o cultivo de arroz (Oryza sativa L. irrigado ou este seguido de outras espécies. Com o objetivo de comparar distintas formas de manejo de água e de fertilizante potássico no comportamento do arroz irrigado, foram conduzidos experimentos por três anos consecutivos, em um Inceptissolo. Foram estudados os efeitos de manejo de água (MA1 - inundação contínua e MA2 - inundação intermitente seguida de contínua e o modo de aplicação de fertilizante potássico (K1 - na semeadura; K2 - parcelada e K3 - meia dose parcelada. O manejo de água apresentou efeito mais expressivo sobre o comportamento do arroz que o do fertilizante potássico. A inundação contínua durante todo o ciclo da cultura proporcionou maiores rendimentos de grãos, expressando maiores valores dos parâmetros produtivos, e melhorou a qualidade industrial dos grãos. Com esta irrigação, o parcelamento da adubação potássica aumentou o aproveitamento do fertilizante. Os manejos do fertilizante potássico afetaram diferentemente o comportamento da cultura do arroz nas distintas formas de manejo de água.Irrigation water levels and timing of potassium fertilization is extremely important for the use of lowlands for irrigated rice (Oryza sativa L. cultivation in crop rotation. A field experiment was conduced for three consecutive years in Inceptisol to study the effects of water management (WM1 - continuous flooding and WM2 - intermittent flooding followed continuous flooding and mode of potassium fertilizer application (K1 - at sowing; K2 - fractional application and K3 - fractional application of half levels on grain yield and yield components of irrigated rice. Water management presented expressive effect on rice performance as compared to potassium fertilization. Continuous flooding during whole

Physiological studies on photochemical oxidant injury in rice plants. III. Relationship between abscisic acid (ABA) and water metabolism in water-stressed rice plants

Energy Technology Data Exchange (ETDEWEB)

Jeong, Y.H.; Ota, Y.

1981-12-01

Several experiments were carried out to determine the effects of exogenously applied ABA on water metabolism, and to clarify the endogenous ABA relationships in ozone-sensitivity under different soil water content in rice plants. The rice plants were cultivated in soil with 60, 80, and 100% of maximum water holding capacity and under submerged condition. The results of the experiments were as follows: ozone injury was reduced with increasing ABA content of which production was increased under water stress conditions. Under water stressed conditions, the rate of water loss was decreased with increasing concentration of ABA applied exogenously. It may be assumed that the ozone-sensitivity is closely related to the stomatal closure caused by the increased ABA content due to water stress. 5 references, 4 tables.

Maize Residue as a Viable Substrate for Farm Scale Cultivation of Oyster Mushroom (Pleurotus ostreatus

Directory of Open Access Journals (Sweden)

Abena O. Adjapong

2015-01-01

Full Text Available In the search for alternatives to sawdust as growing media in commercial mushroom cultivation, three organic substrates obtainable as crop residue, maize husk, maize cob, and maize stalk, with each being supplemented with rice bran, were evaluated as growth media for the oyster mushroom, Pleurotus ostreatus (Kummer. For the tested alternatives to sawdust, the harvested weight of fruiting bodies that sprouted on a kilogram maize husk media per crop (32.99 g was the highest. Sawdust media supported significantly (P<0.001 heavier fruiting bodies (42.18 than the maize residues. The peak mushroom harvests for the various substrates were obtained between the first and seventh fruiting body flushes. The biological efficiency of the substrates, which measured usable nutrients indicated that maize stalk supplemented with rice bran, was 39% compared to that of the sawdust media (60%. The maize husk media and the maize cob media had biological efficiencies of 32% and 9.5%, respectively. These results indicate that two of the tested growing media (maize stalk or husk produced mushrooms with yield characteristics that were comparable to the well-used sawdust in the cultivation of oyster mushrooms. The environmental and economic parameters involved in the use and carting of sawdust make these on-farm crop residues a viable alternative for mushroom cultivation in especially nonforest zones of Ghana.

Estimation of Net Rice Production through Improved CASA Model by Addition of Soil Suitability Constant (ħα

Directory of Open Access Journals (Sweden)

Syed Muhammad Hassan Raza

2018-05-01

Full Text Available Net primary production (NPP is an important indicator of the supply of food and wood. We used a hierarchy model and real time field observations to estimate NPP using satellite imagery. Net radiation received by rice crop canopies was estimated as 27,428 Wm−2 (215.4 Wm−2 as averaged throughout the rice cultivation period (RCP, including 23,168 Wm−2 (118.3 Wm−2 as averaged as shortwave and 4260 Wm−2 (34.63 Wm−2 as averaged as longwave radiation. Soil, sensible and latent heat fluxes were approximated as 3324 Wm−2, 16,549 Wm−2, and 7554 Wm−2, respectively. Water stress on rice crops varied between 0.5838 and 0.1218 from the start until the end of the RCP. Biomass generation declined from 6.09–1.03 g/m2 in the tillering and ripening stages, respectively. We added a soil suitability constant (ħα into the Carnegie-Ames-Stanford Approach (CASA model to achieve a more precise estimate of yield. Classification results suggest that the total area under rice cultivation was 8861 km2. The spatial distribution of rice cultivation as per suitability zone was: 1674 km2 was not suitable (NS, 592 km2 was less suitable (LS, 2210 km2 was moderately suitable (MS and 4385 km2 was highly suitable (HS soil type with ħα ranges of 0.05–0.25, 0.4–0.6, 0.7–0.75 and 0.85–0.95 of the CASA based yield, respectively. We estimated net production as 1.63 million tons, as per 0.46 ton/ha, 1.2 ton/ha 1.9 ton/ha and 2.4 ton/ha from NS, LS, MS and HS soil types, respectively. The results obtained through this improved CASA model, by addition of the constant ħα, are likely to be useful for agronomists by providing more accurate estimates of NPP.

IMPACT OF MARKET-DETERMINED EXCHANGE RATES ON RICE PRODUCTION AND IMPORT IN NIGERIA

Directory of Open Access Journals (Sweden)

Aliyu Aishat Ammani

2013-10-01

Full Text Available Rice is an economically important food security crop, cultivated in almost all of Nigeria’s 36 States. Nigeria spends more than 356 billion naira (2.24 billion US dollars annually on rice import. This paper set out to analyze the trend in rice production, productivity, import, value of import and consumption that follows the adoption of the Structural Adjustment Programme (SAP in Nigeria, with emphasis on the effects of exchange rate (ER deregulation on domestic rice production and rice imports over the period 1986-2010. Relevant time series data were collected and used. A semi-log growth rate model and 2simple linear regression models were developed and estimated. Highlights of the findings include (i accelerated rate of growth in rice production (Instantaneous Growth Rate (IGR 2.2%; Cumulative Growth Rate (CGR 2.2%; rice hectarage (IGR 3.7%; CGR 3.8%; rice importation (IGR 8.5%; CGR8.9%; expenditure on rice importation (IGR 10.6%; CGR 11.2% and rice consumption (IGR 3.4%; CGR 3.5% alongside a significant deceleration in rice yield (IGR -1.4%; CGR -201.4% (ii The observed significant increase in domestic rice production cannot be confidently attributed to ER deregulation alone because it does not lead to a decrease in rice importation into Nigeria. (iii The significant increase in domestic rice importation as observed contradicts a priori expectation that ER deregulation will lead to significant decrease in rice importation. The study concluded that free market approach alone cannot stimulate local agricultural production in countries where farmers producing under low-technology-agriculture are put in direct competition with farmers from advancedtechnology-agriculture; hence governments need to restrict importation to protect local producers.

Soil erosion from shifting cultivation and other smallholder land use in Sarawak, Malaysia

DEFF Research Database (Denmark)

Neergaard, Andreas de; Magid, Jakob; Mertz, Ole

2008-01-01

to compare soil erosion from three land use types in a shifting cultivation system, namely upland rice, pepper gardens and native forest. We used two sample sites within the humid tropical lowland zone in Sarawak, Malaysia. Both areas had steep slopes between 25° and 50°, and were characterised by a mosaic...... land use of native forest, secondary re-growth, upland rice fields and pepper gardens. Soil samples were collected to 90 cm depth from all three land use types, and analysed for various chemical parameters, including texture, total organic matter and 137Cs content. 137Cs is a radioactive isotope...... in the upper soil layers, are unlikely to change the carbon inventory dramatically. 137Cs content in the soil profile indicated largest retention of original topsoil in the native forest plots, and a loss of 18 and 35% of topsoil from upland rice and pepper gardens, respectively, over the past 40 years. When...

Radiotracer experiments on the desorption of iodine from paddy soil with and without rice plants

International Nuclear Information System (INIS)

Muramatsu, Yasuyuki; Uchida, Shigeo; Yoshida, Satoshi

1991-01-01

In order to assess the behavior of radioiodine in rice fields, we have performed laboratory experiments, using 125 I tracer, on the desorption phenomena of iodine from soil during rice cultivation. Most of the 125 I added to the soil was adsorbed by the soil solid phase at the beginning of the experiment. However, the iodine started to desorb into the soil solution with the growth of rice plants. The highest desorption rate of iodine was found around the flowering period, i.e. nearly 30% of the 125 I was desorbed from Ando soil into the soil solution. In contrast to this, no particular increase in the iodine desorption was observed from the uncultivated flooded soil. It was suggested that rice plants had some influence upon iodine desorption from soil and the desorption also depended on the soil types. (author)

Microbial Activity and Silica Degradation in Rice Straw

Science.gov (United States)

Kim, Esther Jin-kyung

increased. Silicase activity did not change across nitrogen treatments despite a shift in microbial community with varied nitrogen concentration. Samples treated with different nitrogen concentrations had similar levels of diversity, however the microbial community composition differed with added nitrogen. The results demonstrated that adding nitrogen to rice straw during thermophilic decomposition nurtured a more active microbial community and promoted enzyme secretion thus improving the ability to discover enzymes for rice straw deconstruction. These results can inform future experiments for cultivating a unique, thriving compost-derived microbial community that can successfully decompose rice straw. Understanding the silicase activity of microorganisms may alleviate the challenges associated with silica in various feedstocks.

Irradiation with protons in order to obtain new rice varieties

International Nuclear Information System (INIS)

Gonzalez, Maria C.; Cristo, Elizabeth; Fuentes, Jorge L.

2001-01-01

In the Laboratory of Genetics and Improvement of the National Institute of Agricultural Sciences was developed a Program of Genetic Improvement using Biotechnical and Nuclear Techniques in order to obtain new rice varieties of high yield potential under drought stress condition. For them different explants types were used starting from seeds of the Cuban variety of rice Amistad 82 irradiated with protons in dose of 10, 20, 30, 40, 50, 60, 70, 80, 90 and 100 Gy. The explants were cultivated in vitro in order to obtaining callus and later plant regenerate. The plant selected in vitro was multiplied being carried out several selection cycles under field conditions. A remarkable stimulation was observed from the regeneration of plants when using dose of 20 Gy and it was possible to select 4 promising lines that differ of the donor as for cycle, architecture of the plant and tolerance to drought. Tjis result demonstrates the potentialities of this radiation source for obtaining of new rice varieties

Fermentation Quality and Additives: A Case of Rice Straw Silage

Directory of Open Access Journals (Sweden)

Yusuff Oladosu

2016-01-01

Full Text Available Rice cultivation generates large amount of crop residues of which only 20% are utilized for industrial and domestic purposes. In most developing countries especially southeast Asia, rice straw is used as part of feeding ingredients for the ruminants. However, due to its low protein content and high level of lignin and silica, there is limitation to its digestibility and nutritional value. To utilize this crop residue judiciously, there is a need for improvement of its nutritive value to promote its utilization through ensiling. Understanding the fundamental principle of ensiling is a prerequisite for successful silage product. Prominent factors influencing quality of silage product include water soluble carbohydrates, natural microbial population, and harvesting conditions of the forage. Additives are used to control the fermentation processes to enhance nutrient recovery and improve silage stability. This review emphasizes some practical aspects of silage processing and the use of additives for improvement of fermentation quality of rice straw.

Fermentation Quality and Additives: A Case of Rice Straw Silage.

Science.gov (United States)

Oladosu, Yusuff; Rafii, Mohd Y; Abdullah, Norhani; Magaji, Usman; Hussin, Ghazali; Ramli, Asfaliza; Miah, Gous

2016-01-01

Rice cultivation generates large amount of crop residues of which only 20% are utilized for industrial and domestic purposes. In most developing countries especially southeast Asia, rice straw is used as part of feeding ingredients for the ruminants. However, due to its low protein content and high level of lignin and silica, there is limitation to its digestibility and nutritional value. To utilize this crop residue judiciously, there is a need for improvement of its nutritive value to promote its utilization through ensiling. Understanding the fundamental principle of ensiling is a prerequisite for successful silage product. Prominent factors influencing quality of silage product include water soluble carbohydrates, natural microbial population, and harvesting conditions of the forage. Additives are used to control the fermentation processes to enhance nutrient recovery and improve silage stability. This review emphasizes some practical aspects of silage processing and the use of additives for improvement of fermentation quality of rice straw.

Effect of Different Proportions of Agrowaste on Cultivation Yield and Nutritional Composition of the Culinary-Medicinal Jelly Mushroom Auricularia polytricha (Higher Basidiomycetes).

Science.gov (United States)

Wu, Chiu-Yeh; Liang, Chih-Hung; Wu, Kuan-Jzen; Shih, Hsin-Der; Liang, Zeng-Chin

2017-01-01

In this study, Auricularia polytricha was cultivated on a sawdust basal substrate supplemented with different proportions (30%, 45%, and 60%, respectively) of agrowastes-sugarcane bagasse (SB), rice straw (RS), and rice husk (RH)-to evaluate the alternative substrates. The mycelial growth rate, total colonization time, time to first primordia, biological efficiency, and chemical composition of the fruiting bodies were determined. Results indicated that the 60% SB substrate was the best substrate for mycelial growth of A. polytricha, with a corresponding total colonization period of 35.2 days, followed by the control (35.5 days) and 45% SB (36.2 days) substrates. The most suitable substrate with a high biological efficiency was 60% RS substrate (159.14%), followed by the 45% SB (128.45%), and 20% RH (124.47%) substrates. The nutrient values of fruiting bodies showed the largest amounts of ash, protein, fat, carbohydrates, and energy cultivated on 60% SB, 60% SB, 30% SB, 30% RH, and 30% RH/the control substrates, respectively. The results indicated that 60% RS was an appropriate substrate for A. polytricha cultivation.

SALINITY TOLERANCE OF SEVERAL RICE GENOTYPES AT SEEDLING STAGE

Directory of Open Access Journals (Sweden)

Heni Safitri

2018-01-01

Full Text Available Salinity is one of the most serious problems in rice cultivation. Salinity drastically reduced plant growth and yield, especially at seedling stage. Several rice genotypes have been produced, but their tolerance to salinity has not yet been evaluated. The study aimed to evaluate salinity tolerance of rice genotypes at seedling stage. The glasshouse experiment was conducted at Cimanggu Experimental Station, Bogor, from April to May 2013. Thirteen rice genotypes and two check varieties, namely Pokkali (salt tolerant and IR29 (salt sensitive were tested at seedling stage. The experiment was arranged in a randomized complete block design with three replications and two factors, namely the levels of NaCl (0 and 120 mM and 13 genotypes of rice. Rice seedlings were grown in the nutrient culture (hydroponic supplemented with NaCl at different levels. The growth and salinity injury levels of the genotypes were recorded periodically. The results showed that salinity level of 120 mM NaCl reduced seedling growth of all rice genotypes, but the tolerant ones were survived after 14 days or until the sensitive check variety died. Based on the visual injury symptoms on the leaves, five genotypes, i.e. Dendang, Inpara 5, Inpari 29, IR77674-3B-8-2-2-14-4-AJY2, and IR81493-BBB-6-B- 2-1-2 were tolerant to 120 mM salinity level, while Inpara 4 was comparable to salt sensitive IR29. Hence, Inpara 4 could be used as a salinity sensitive genotype for future research of testing tolerant variety. Further evaluation is needed to confirm their salinity tolerance under field conditions. 

Transgenic strategies to confer resistance against viruses in rice plants

Directory of Open Access Journals (Sweden)

Takahide eSasaya

2014-01-01

Full Text Available Rice (Oryza sativa L. is cultivated in more than 100 countries and supports nearly half of the world’s population. Developing efficient methods to control rice viruses is thus an urgent necessity because viruses cause serious losses in rice yield. Most rice viruses are transmitted by insect vectors, notably planthoppers and leafhoppers. Viruliferous insect vectors can disperse their viruses over relatively long distances, and eradication of the viruses is very difficult once they become widespread. Exploitation of natural genetic sources of resistance is one of the most effective approaches to protect crops from virus infection; however, only a few naturally occurring rice genes confer resistance against rice viruses. In an effort to improve control, many investigators are using genetic engineering of rice plants as a potential strategy to control viral diseases. Using viral genes to confer pathogen-derived resistance against crops is a well-established procedure, and the expression of various viral gene products has proved to be effective in preventing or reducing infection by various plant viruses since the 1990s. RNA-interference (RNAi, also known as RNA silencing, is one of the most efficient methods to confer resistance against plant viruses on their respective crops. In this article, we review the recent progress, mainly conducted by our research group, in transgenic strategies to confer resistance against tenuiviruses and reoviruses in rice plants. Our findings also illustrate that not all RNAi constructs against viral RNAs are equally effective in preventing virus infection and that it is important to identify the viral Achilles’ heel gene to target for RNAi attack when engineering plants.

Proposal of a growth chamber for growing Super-Dwarf Rice in Space Agriculture

Science.gov (United States)

Hirai, Hiroaki; Kitaya, Yoshiaki; Tsukamoto, Koya; Yamashita, Youichirou; Hirai, Takehiro

Space agriculture needs to be considered to supply food for space crew who stay in space over an extended time period. So far crops such as wheat, onion, oat, pea and lettuce grew to explore the possibility of space agriculture. Although rice is a staple food for most of the world, research on rice cultivation in space has not been done much. Rice grains are nutrient-rich with carbohydrate, protein and dietary fiber. Moreover, rice is a high yield crop and harvested grains have a long shelf life. However, the plant height of standard rice cultivars is relatively long, requiring much space. In addition, rice plants require higher light intensities for greater yield. For these reasons, it is difficult to establish facilities for rice culture in a limited space with a low cost. We propose to employee a super-dwarf cultivar and a small growth chamber with a new type of LEDs. The super-dwarf rice is a short-grain japonica variety and the plant height is approximately 20 cm that is one-fifth as tall as standard cultivars. The LED light used as a light source for this study can provide full spectrum of 380 nm to 750 nm. Air temperature and humidity were controlled by a Peltier device equipped in the chamber. The characteristics of the new type of LEDs and other equipments of the chamber and the ground based performance of super-dwarf rice plants grown in the chamber will be reported.

Mapping rice areas of South Asia using MODIS multitemporal data

Science.gov (United States)

Gumma, M.K.; Nelson, A.; Thenkabail, P.S.; Singh, A.N.

2011-01-01

Our goal is to map the rice areas of six South Asian countries using moderate-resolution imaging spectroradiometer (MODIS) time-series data for the time period 2000 to 2001. South Asia accounts for almost 40% of the world's harvested rice area and is also home to 74% of the population that lives on less than $2.00 a day. The population of the region is growing faster than its ability to produce rice. Thus, accurate and timely assessment of where and how rice is cultivated is important to craft food security and poverty alleviation strategies. We used a time series of eight-day, 500-m spatial resolution composite images from the MODIS sensor to produce rice maps and rice characteristics (e.g., intensity of cropping, cropping calendar) taking data for the years 2000 to 2001 and by adopting a suite of methods that include spectral matching techniques, decision trees, and ideal temporal profile data banks to rapidly identify and classify rice areas over large spatial extents. These methods are used in conjunction with ancillary spatial data sets (e.g., elevation, precipitation), national statistics, and maps, and a large volume of field-plot data. The resulting rice maps and statistics are compared against a subset of independent field-plot points and the best available subnational statistics on rice areas for the main crop growing season (kharif season). A fuzzy classification accuracy assessment for the 2000 to 2001 rice-map product, based on field-plot data, demonstrated accuracies from 67% to 100% for individual rice classes, with an overall accuracy of 80% for all classes. Most of the mixing was within rice classes. The derived physical rice area was highly correlated with the subnational statistics with R2 values of 97% at the district level and 99% at the state level for 2000 to 2001. These results suggest that the methods, approaches, algorithms, and data sets we used are ideal for rapid, accurate, and large-scale mapping of paddy rice as well as for generating

Impact of Organic Amendments on Global Warming Potential of Diversified Tropical Rice Rotation Systems

Science.gov (United States)

Janz, B.; Weller, S.; Kraus, D.; Wassmann, R.; Butterbach-Bahl, K.; Ralf, K.

2017-12-01

Paddy rice cultivation is increasingly challenged by irrigation water scarcity, which is forcing farmers to change traditional rice cultivation from flooded double-rice systems to the introduction of well-aerated upland crops during dry season. Emissions of methane (CH4) are expected to decrease, while there is a risk of increasing emissions of nitrous oxide (N2O) and decreasing soil organic carbon (SOC) stocks through volatilization in the form of carbon dioxide (CO2). We present a unique dataset of long-term continuous greenhouse gas emission measurements (CH4 and N2O) in the Philippines to assess global warming potentials (GWP) of diversified rice crop rotations including different field management practices such as straw residue application and legume intercropping. Since 2012, more than four years of CH4 and N2O emissions in double-rice cropping (R-R) and paddy rice rotations diversified with either maize (R-M) or aerobic rice (R-A) during dry season have been collected. Introduction of upland crops reduced irrigation water use and CH4 emissions by 66-81% and 95-99%, respectively. Although dry season N2O emissions increased twice- to threefold in the diversified systems, the strong reduction of CH4 led to a significantly lower annual GWP (CH4 + N2O) as compared to the traditional R-R system. Diversified crop management practices were first implemented during land-preparation for dry season 2015 where i) 6 t/ha rice straw was returned to the field and ii) mungbean was grown as a cover-crop between dry and wet season in addition to rice straw application. The input of organic material (straw and mungbean) led to higher substrate availability for methanogens during the following season. Therefore, GWP was 9-39% higher following straw incorporation than the control treatment. This increase was mainly driven by additional CH4 emissions. Even more, mungbean intercropping further increased GWPs, whereby the increment was highest in R-R rotation (88%) and lowest in R

Indicators of structural degradation on intensively cultivated soils of the Piedemonte Llanero

International Nuclear Information System (INIS)

Obando, Franco H

2000-01-01

In order to evaluate the validity of a diagnosis methodology of structural soil degradation based on the combination of internal morphology of aggregates and measurement of resistance to penetration, a reconnaissance survey of physical degradation processes on intensively cultivated soils in the Piedemonte Llanero was carried out. The internal morphology of soil aggregates was classified into five states; micro-aggregate (μ), compacted (∇ μ), very compacted (∇), cracked compacted (φ) and agglomerate (ψ) defined according to morphological characteristics derived from cultivation practices and wheel traffic. Two crops systems were selected: low-lying rice (mono-cropping) during 30 years) and upland rice, maize, soybean cotton crop rotations during 20 years in two landscapes of the alluvial plain of piedmont (medium terraces of the sub-recent piedmont, TM, and No-flooding Lowland Flats of the Recent Piedmont, PR). A natural forest and 20 years cacao tree plantation was include as benchmark systems. It was found that higher values of resistance to penetration and total density are associated to compact layers (∇ μ, ∇ and φ states) and lower values to the μ a ψ states. The ∇ state was particularly evident on TM under mono-cropping e low-lying rice crop. High values of resistance to penetration of topsoil on PR were rather associated to e textural resistance. Under natural forest and cacao e plantation it was found the micro-aggregate state (μ) o on surface soil. High values of weighed mean diameter of water stable aggregates, DMP, (≥ 5mm) were associated to compacted layers in the crop rotation e systems in PR. it was demonstrated that this methodology developed in France (temperate zone) can be applied to tropical soils

Effect of Farming, Social, Economical and Extension Characteristics of Rice Farmers on Land Consolidation in Sari County, Iran

Directory of Open Access Journals (Sweden)

G. Dinpanah

2011-06-01

Full Text Available The purpose of this study was to determine effect of farming, social, economical and extension characteristics of rice farmer on land consolidation. The research population consisted of 329, farmers who were selected randomly by using randomized stratified sampling method. The methodological approach of this study was causal- comparative. Validity of the instrument was established by a panel of experts consisting of senior faculty members in agricultural extension and education department, and research committee advisors. Reliability analysis was conducted by using and Cronbach alpha formula and result was found to be 0.82. The results showed that means of farmers age, rice farming experience and rice-cultivated land acreage of rice were highly effective in land. Results also showed that factors like means for farm acreage, social influence, social participation, attitude of rice farmers toward land consolidation, yield, income, cost-benefit, mass media, information sources extension courses and education levels of rice farmers were very effective on land consolidation.

Effects of Chemical Applications to Metal Polluted Soils on Cadmium Uptake by Rice Plant

Directory of Open Access Journals (Sweden)

Yoo J. H.

2013-04-01

Full Text Available Pot experiment using metal polluted soils was conducted to investigate the effects of lime, iron and sulfur on changes in Cd availability and uptake by rice plant. Drainage and irrigation of water were performed to develop redox changes like field cultivation. Iron chloride and sodium sulfate solutions were applied to the pots in the middle of growth period of rice plant. Reactive metal pool in heavily polluted soils was slightly decreased after treatments with lime, iron chloride, sodium sulfate and combination of these chemicals. However, cadmium uptake by rice plant was significantly different across the treatments and the extent of Cd pollution. For highly polluted soils, more Cd reduction was observed in iron chloride treatments. Cd content in polished rice for iron chloride and (iron chloride+organic matter treatments was only 16-23% and 25-37% compared to control and liming, respectively. Treatment of (iron chloride+sulfate rather increased Cd content in rice. For moderately polluted soils, Cd reduction rate was the order of (OM+iron chloride > iron chloride > lime. Other treatments including sulfate rather increased Cd content in rice maximum 3 times than control. It was proposed to determine the optimum application rate of iron for minimizing hazardous effect on rice plant.

Influence of transgenic rice expressing a fused Cry1Ab/1Ac protein on frogs in paddy fields.

Science.gov (United States)

Wang, Jia-Mei; Chen, Xiu-Ping; Liang, Yu-Yong; Zhu, Hao-Jun; Ding, Jia-Tong; Peng, Yu-Fa

2014-11-01

As genetic engineering in plants is increasingly used to control agricultural pests, it is important to determine whether such transgenic plants adversely affect non-target organisms within and around cultivated fields. The cry1Ab/1Ac fusion gene from Bacillus thuringiensis (Bt) has insecticidal activity and has been introduced into rice line Minghui 63 (MH63). We evaluated the effect of transgenic cry1Ab/1Ac rice (Huahui 1, HH1) on paddy frogs by comparing HH1 and MH63 rice paddies with and without pesticide treatment. The density of tadpoles in rice fields was surveyed at regular intervals, and Cry1Ab/1Ac protein levels were determined in tissues of tadpoles and froglets collected from the paddy fields. In addition, Rana nigromaculata froglets were raised in purse nets placed within these experimental plots. The survival, body weight, feeding habits, and histological characteristics of the digestive tract of these froglets were analyzed. We found that the tadpole density was significantly decreased immediately after pesticide application, and the weight of R. nigromaculata froglets of pesticide groups was significantly reduced compared with no pesticide treatment, but we found no differences between Bt and non-Bt rice groups. Moreover, no Cry1Ab/1Ac protein was detected in tissue samples collected from 192 tadpoles and froglets representing all four experimental groups. In addition, R. nigromaculata froglets raised in purse seines fed primarily on stem borer and non-target insects, and showed no obvious abnormality in the microstructure of their digestive tracts. Based on these results, we conclude that cultivation of transgenic cry1Ab/1Ac rice does not adversely affect paddy frogs.

Studying the Impacts of Environmental Factors and Agricultural Management on Methane Emissions from Rice Paddies Using a Land Surface Model

Science.gov (United States)

Lin, T. S.; Gahlot, S.; Shu, S.; Jain, A. K.; Kheshgi, H. S.

2017-12-01

Continued growth in population is projected to drive increased future demand for rice and the methane emissions associated with its production. However, observational studies of methane emissions from rice have reported seemingly conflicting results and do not all support this projection. In this study we couple an ecophysiological process-based rice paddy module and a methane emission module with a land surface model, Integrated Science Assessment Model (ISAM), to study the impacts of various environmental factors and agricultural management practices on rice production and methane emissions from rice fields. This coupled modeling framework accounts for dynamic rice growth processes with adaptation of photosynthesis, rice-specific phenology, biomass accumulation, leaf area development and structures responses to water, temperature, light and nutrient stresses. The coupled model is calibrated and validated with observations from various rice cultivation fields. We find that the differing results of observational studies can be caused by the interactions of environmental factors, including climate, atmospheric CO2 concentration, and N deposition, and agricultural management practices, such as irrigation and N fertilizer applications, with rice production at spatial and temporal scales.

LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon).

Science.gov (United States)

Dai, Xiaodong; Ding, Younian; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Zhu, Zuofeng; Sun, Xianyou; Sun, Xuewen; Gu, Ping; Cai, Hongwei; Sun, Chuanqing

2012-10-01

Flowering at suitable time is very important for plants to adapt to complicated environments and produce their seeds successfully for reproduction. In rice (Oryza rufipogon Griff.) photoperiod regulation is one of the important factors for controlling heading date. Common wild rice, the ancestor of cultivated rice, exhibits a late heading date and a more sensitive photoperiodic response than cultivated rice. Here, through map-based cloning, we identified a major quantitative trait loci (QTL) LHD1 (Late Heading Date 1), an allele of DTH8/Ghd8, which controls the late heading date of wild rice and encodes a putative HAP3/NF-YB/CBF-A subunit of the CCAAT-box-binding transcription factor. Sequence analysis revealed that several variants in the coding region of LHD1 were correlated with a late heading date, and a further complementary study successfully rescued the phenotype. These results suggest that a functional site for LHD1 could be among those variants present in the coding region. We also found that LHD1 could down-regulate the expression of several floral transition activators such as Ehd1, Hd3a and RFT1 under long-day conditions, but not under short-day conditions. This indicates that LHD1 may delay flowering by repressing the expression of Ehd1, Hd3a and RFT1 under long-day conditions. © 2012 Institute of Botany, Chinese Academy of Sciences.

Establishment of a rice-duck integrated farming system and its effects on soil fertility and rice disease control

Science.gov (United States)

Teng, Qing; Hu, Xue-Feng; Cheng, Chang; Luo, Zhi-Qing; Luo, Fan

2015-04-01

Rice-duck integrated farming is an ecological farming system newly established in some areas of southern China . It was reported that the ducks walking around the paddy fields is beneficial to control weed hazards and reduce rice pests and diseases. To study and evaluate the effects of the rice-duck integrated farming on soil fertility and rice disease control, a field experiment of rice cultivation was carried out in the suburb of Shanghai in 2014. It includes a treatment of raising ducks in the fields and a control without ducks. The treatment was implemented by building a duck coop nearby the experimental fields and driving 15 ducks into a plot at daytime since the early stage of rice growth. Each plot is 667 m2 in area. The treatment and control were replicated for three times. No any herbicides, pesticides, fungicides and chemical fertilizers were applied during the experiment to prevent any disturbance to duck growing and rice weed hazards and disease incidences from agrochemicals. The results are as follows: (1) The incidences of rice leaf rollers (Cnaphalocrocis medinalis) and stem borers treated with ducks, 0.45%and 1.18% on average, respectively, are lower than those of the control, 0.74% and 1.44% on average, respectively. At the late stage of rice growth, the incidence of rice sheath blight treated with ducks, 13.15% on average, is significantly lower than that of the control, 16.9% on average; and the incidence of rice planthoppers treated with ducks, 11.3 per hill on average, is also significantly lower than that of the control, 47.4 per hill on average. (2) The number of weeds in the plots treated with ducks, 8.3 per m2 on average, is significantly lower than that of the control, 87.5 m2 on average. (3) Raising ducks in the fields could also enhance soil enzyme activity and nutrient status. At the late stage of rice growth, the activities of urease, phosphatase, sucrase and catalase in the soils treated with ducks are 1.39 times, 1.40 times, 1

Review: Biodiversity conservation strategy in a native perspective; case study of shifting cultivation at the Dayaks of Kalimantan

Directory of Open Access Journals (Sweden)

AHMAD DWI SETYAWAN

2010-07-01

Full Text Available Setyawan AD. 2010. Biodiversity conservation strategy in a native perspective; case study of shifting cultivation at the Dayaks of Kalimantan. Nusantara Bioscience 2: 97-108. Native tribes generally are original conservationists; they build genuine conservation strategy of natural resources and environment for sustainable living. Dayak is a native tribe of Kalimantan that has been living for thousands of years; they use shifting cultivation to manage the communal forest lands due to Kalimantan’s poor soil of minerals and nutrients, where the presence of phosphorus becomes a limiting factor for crops cultivation. In tropical forests, phosphorus mostly stored in the trees, so to remove it, the forest burning is carried out. Nutrients released into the soil can be used for upland rice (gogo cultivation, until depleted; after that, cultivators need to open a forest, while the old land was abandoned (fallow until it becomes forest again (for 20-25 years. The consecutive land clearing causes the formation of mosaics land with different succession ages and diverse biodiversity. This process is often combined with agroforestry systems (multicultural forest gardens, where the will-be-abandoned fields are planted with a variety of useful trees that can be integrated in forest ecosystems, especially rubber and fruits. These systems of shifting cultivation are often blamed as the main factor of forest degradation and fires, but in the last 300 years, this system has little impact on forest degradation. But, this is relatively low in productivity and subsistent, so it is not suitable for the modern agriculture which demands high productivity and measurable, mass and continuous yield, as well as related to the market. The increased population and industrial development of forestry, plantation, mining, etc. make the communal forest become narrower, so the fallow periods are shortened (5-15 years and the lands are degraded into grasslands. In the future

Uptake and distributions of 90Sr and 137Cs in rice plants

International Nuclear Information System (INIS)

Tsukada, Hirofumi; Takeda, Akira; Hasegawa, Hidenao

2008-01-01

Polished rice is a staple food in Asian countries and ingestion of polished rice is one of the most important pathways of radionuclides into humans. Inedible parts of rice plants are returned to the soil as fertilizer and are used as an ingredient of feed for livestock. Strontium-90 and 137 Cs are important radionuclides for the assessment of radiation exposure to the public because of their high fission yield, long-half lives and transferability in the environment. The purpose of the present study is to obtain information on the distributions of 90 Sr and 137 Cs in rice plant components for better understanding of the fate of the radionuclides in an agricultural environment. Rice plants were cultivated in an experimental field and collected at harvest time. The concentrations of 90 Sr and 137 Cs in the soil were 5.6 and 4.4 Bq kg -1 , respectively. Rice plant samples were separated into polished rice, rice bran, hull, straw and root parts, and then the concentrations of 90 Sr and 137 Cs in the samples were determined. The concentrations of 90 Sr and 137 Cs in polished rice were 0.012 and 0.0048 Bq kg -1 dry weight, respectively. The concentrations of 90 Sr and 137 Cs varied by two and one orders of magnitudes in rice plant components, respectively. The edible component, polished rice, accounted for 32% of the total dry weight. In the entire rice plants, only 0.5% of the total 90 Sr and 10% of the total 137 Cs were found in polished rice. Contents of 90 Sr and 137 Cs in the above ground parts were 0.84 and 0.021 Bq m -2 , respectively. For each cropping, the percentages of 90 Sr and 137 Cs uptake from the upper soil layer to the aboveground biomass of rice plants were calculated as 0.094 and 0.0030% of their soil inventories, respectively. (author)

Dissipation of phenanthrene and pyrene at the aerobic-anaerobic soil interface: differentiation induced by the rhizosphere of PAH-tolerant and PAH-sensitive rice (Oryza sativa L.) cultivars.

Science.gov (United States)

He, Yan; Xia, Wen; Li, Xinfeng; Lin, Jiajiang; Wu, Jianjun; Xu, Jianming

2015-03-01

A pot experiment was conducted to reveal the removal of two polycyclic aromatic hydrocarbons (PAHs) (phenanthrene, PHE, and pyrene, PYR) during rice cultivation in a paddy field. The rhizosphere effect on facilitating dissipation of PAHs varied simultaneously as a function of soil properties, PAH types, cultivation time, and genotypes within rice cultivars, with differences performed for PYR but not PHE. Changes in soil PLFA profiles evidenced that the growth of rice roots modified the dominant species within rhizosphere microbial communities and induced a selective enrichment of Gram-negative aerobic bacteria capable of degrading, thereby resulting in the differentiated dissipation of PYR. While the insignificant differences in PHE dissipation might be attributed to its higher solubility and availability under flooded condition that concealed the differences in improvement of bioavailability for microorganisms between rhizosphere and non-rhizosphere, and between both soils and both rice cultivars. Our findings illustrate that the removal of PAHs in paddy soils was more complex relative to those in dryland soils. This was possibly due to the specialty of rice roots for oxygen secretion that provides development of redox heterogeneous microbial habitats at root-soil interface under flooded condition.

Marker-assisted backcrossing: a useful method for rice improvement.

Science.gov (United States)

Hasan, Muhammad Mahmudul; Rafii, Mohd Y; Ismail, Mohd R; Mahmood, Maziah; Rahim, Harun A; Alam, Md Amirul; Ashkani, Sadegh; Malek, Md Abdul; Latif, Mohammad Abdul

2015-03-04

The world's population is increasing very rapidly, reducing the cultivable land of rice, decreasing table water, emerging new diseases and pests, and the climate changes are major issues that must be addressed to researchers to develop sustainable crop varieties with resistance to biotic and abiotic stresses. However, recent scientific discoveries and advances particularly in genetics, genomics and crop physiology have opened up new opportunities to reduce the impact of these stresses which would have been difficult if not impossible as recently as the turn of the century. Marker assisted backcrossing (MABC) is one of the most promising approaches is the use of molecular markers to identify and select genes controlling resistance to those factors. Regarding this, MABC can contribute to develop resistant or high-yielding or quality rice varieties by incorporating a gene of interest into an elite variety which is already well adapted by the farmers. MABC is newly developed efficient tool by which using large population sizes (400 or more plants) for the backcross F 1 generations, it is possible to recover the recurrent parent genotype using only two or three backcrosses. So far, many high yielding, biotic and abiotic stresses tolerance, quality and fragrance rice varieties have been developed in rice growing countries through MABC within the shortest timeframe. Nowadays, MABC is being used widely in plant breeding programmes to develop new variety/lines especially in rice. This paper reviews recent literature on some examples of variety/ line development using MABC strategy.

Delay-tolerant mobile network protocol for rice field monitoring using wireless sensor networks

Science.gov (United States)

Guitton, Alexandre; Andres, Frédéric; Cardoso, Jarbas Lopes; Kawtrakul, Asanee; Barbin, Silvio E.

2015-10-01

The monitoring of rice fields can improve productivity by helping farmers throughout the rice cultivation cycle, on various issues: when to harvest, when to treat the crops against disease, when to increase the water level, how to share observations and decisions made in a collaborative way, etc. In this paper, we propose an architecture to monitor a rice field by a wireless sensor network. Our architecture is based on static sensor nodes forming a disconnected network, and mobile nodes communicating with the sensor nodes in a delay-tolerant manner. The data collected by the static sensor nodes are transmitted to mobile nodes, which in turn transmit them to a gateway, connected to a database, for further analysis. We focus on the related architecture, as well as on the energy-efficient protocols intended to perform the data collection.

Prevalence, isolation and characterization of Bacillus cereus strains from rice of local cultivators of Sabah, Sarawak, and Peninsular Malaysia

Science.gov (United States)

Sawei, Jelin; Sani, Norrakiah Abdullah

2016-11-01

Bacillus cereus is a spore-forming, facultative anaerobic, motile microorganism that has been identified as a causative agent of two types of gastrointestinal diseases such as emetic and diarrhea. This foodborne pathogen is found in both vegetative cells and endospores form in foods such as rice either raw or cooked. The aim of this study is to investigate and determine the prevalence, characterize and identify the isolation of vegetative cells and endospores of B. cereus in thirty varieties (n=3) of raw rice from Sabah, Sarawak and Peninsular Malaysia. A total of 90 (n=90) raw rice were examined and 84 (93.33%) samples were positive to vegetative cells of B. cereus. However, only 32 (35.56%) samples were positive for endospore cells that able to germinate after samples were heated at 75°C for 15 mins. The mean log cfu/g for vegetative cells were higher range (0.00 - 4.1533) than visible endospores (0.00 - 3.7533 mean log cfu/g). Sample of raw red rice (UKMRC9) had significantly higher contamination by both vegetative cells and endospores at p<0.05, than the other raw rice samples.

Study on the improvement of dinitrogen fixation on rice-bacteria associative system

International Nuclear Information System (INIS)

Huang Yide; Zhu Hairong; Qiu Yuansheng; Iyama, S.; Fuji, T.; Hirota, Y.

1991-01-01

Inoculation of improved associative diazotrophs Klebsiella oxytoca NG 13 or Enterobacter cloacae E26 was performed in association with three varietes of rice (Oryza sativa L.), namely Indica type C544, Japonica type T65 and Harebare. These improved diazotrophs carried a nifA containing plasmid pMC73A derived from Klebsiella pneumoniae M5al. In pot experiments the rice seedlings were planted in non-sterilized soil and grown under flooded conditions in the green hours. By using 15 N dilution technique it has shown that inoculation of these improved bacterial strains (NG13/pMC73A or E26/pMC73A) stimulated the growth rate and increased the nitrogen content of rice plants in comparison with that of Nif - phenotype K.oxytoca NG1389 and E.cloacae E262. The nitrogen-fixing rate was 10-35% Ndfa after 120 days cultivation

Estimating rice grain protein contents with SPOT/HRV data acquired at maturing stage

International Nuclear Information System (INIS)

Asaka, D.; Shiga, H.

2003-01-01

Rice grain protein contents that play an important role in the eating quality of rice can be estimated from leaf color in maturing stage. In order to investigate the distribution of paddy rice grain protein of a wide area, we employed SPOT/HRV data from August to September for successive 4 years, selecting the Naganuma town, Hokkaido as the study area. The relationship between each spectral bands and ground survey data were examined. The result showed that the grain protein contents could be estimated using the normalized difference vegetation index (NDVI) with the absolute root mean square error less than 0.4% under the condition that the time lag between the satellite observation date and the maturing stage was within 20 days. In this period, we would have enough chance to get clear observation data every year under the weather conditions in the study area using the SPOT/HRV sensors that has pointing ability. For major rice varieties cultivated in Hokkaido, the same relationship between NDVI and protein contents was observed. Thus, we conclude that the method proposed in this study is operational in rice production

Comparison of Rice Direct Seeding Methods (Mechanical and Manual with Transplanting Method

Directory of Open Access Journals (Sweden)

A Eyvani

2014-04-01

Full Text Available The main method of rice planting in Iran is transplanting. Due to poor mechanization of rice production, this method is laborious and costly. The other method is direct seeding in wet lands which is performed in the one third of rice cultivation area of the world. The most important problem in this method is high labor requirement of weed control. In order to compare the different rice planting methods (direct drilling, transplanting, and seed broadcasting a manually operated rice direct seeder (drum seeder was designed and fabricated. The research was conducted using a randomized complete block design with three treatments and three replications. Required draft force, field efficiency, effective field capacity, yield, and yield components were measured and the treatments were compared economically. Results showed that there were significant differences among the treatments from the view point of rice yield at the confidence level of 95% i.e. the transplanting method had the maximum yield. A higher rice yield was obtained from the direct seeder compared to the manual broadcasting method but, the difference between these two methods for crop yield was not significant even at the confidence level of the 95%. The coefficient of variation of seed distribution with direct seeding was more than 20%. The labor and time requirements per hectare reduced to 7 and 20 times, respectively when comparing the newly designed direct seeder with the transplanting method. The direct seeding method had the highest benefit to cost ratio in spite of its lower yield. Therefore, this method could be recommended in the rice growing regions.

Improvement results of rice (Oryza glaberima) by induced mutation

International Nuclear Information System (INIS)

Cisse, F.

1994-01-01

In Mali, rice (Orzya glaberima) is still largely cultivated under conditions of natural semi-controlled submersion. To improve productivity the local varieties have been gradually replaced by new varieties, but the yields of these became lower because of the irregularity of the rain and the comparative weakness of the strain. For this reason a programme to improve the local varieties by means of gamma radiation has been undertaken. This document presents the results obtained to date

A practicable detection system for genetically modified rice by SERS-barcoded nanosensors.

Science.gov (United States)

Chen, Kun; Han, Heyou; Luo, Zhihui; Wang, Yanjun; Wang, Xiuping

2012-04-15

Since the global cultivation of genetically modified crops constantly expands, it remains a high demand to establish different ways to sort food and feed that consist or contain genetically modified organisms. Surface-enhanced Raman scattering (SERS) spectroscopy is a flexible tool for biological analysis due to its excellent properties for detecting wide varieties of target biomolecules including nucleic acids. In the present study, a SERS-barcoded nanosensor was developed to detect Bacillus thuringiensis (Bt) gene-transformed rice expressing insecticidal proteins. The barcoded sensor was designed by encapsulation of gold nanoparticles with silica and conjugation of oligonucleotide strands for targeting DNA strands. The transition between the cry1A(b) and cry1A(c) fusion gene sequence was used to construct a specific SERS-based detection method with a detection limit of 0.1 pg/mL. In order to build the determination models to screen transgene, a series mixture of Bt rice and normal rice were prepared for SERS assay, and the limit of detection was 0.1% (w/w) transgenic Bt rice relative to normal rice. The sensitivity and accuracy of the SERS-based assay was comparable with real-time PCR. The SERS-barcoded analytical method would provide precise detection of transgenic rice varieties but also informative supplement to avoid false positive outcomes. Crown Copyright © 2012. Published by Elsevier B.V. All rights reserved.

Interactive effects of straw-derived biochar and N fertilization on soil C storage and rice productivity in rice paddies of Northeast China

International Nuclear Information System (INIS)

Sui, Yanghui; Gao, Jiping; Liu, Caihong; Zhang, Wenzhong; Lan, Yu; Li, Shuhang; Meng, Jun; Xu, Zhengjin; Tang, Liang

2016-01-01

Impacts of biochar on greenhouse gas emissions and C sequestration in agricultural soils have been considered as the key to mitigate climate change. There is limited knowledge regarding the effects of rice straw-derived biochar and interaction with N fertilization on soil C sequestration and rice productivity in fertile paddy fields. A 2-year (2013 and 2014) consecutive field trial was performed using straw treatment (5.05 t ha −1 ) and biochar amendment (0, 1.78, 14.8 and 29.6 t ha −1 ) with or without urea application in a rice paddy in Northeast China. A super high yielding rice variety (Oryza sativa L. subsp. Japonica cv. ‘Shennong 265’) was cultivated with permanent flooding. Results showed that biochar amendments significantly decreased CH 4 emissions relative to straw treatment irrespective of N fertilization, especially in N-fertilized soils with 1.78 t ha −1 biochar. There were no differences in CO 2 emissions with respect to biochar amendments, except for 14.8 t ha −1 biochar with N fertilization. Straw treatment had the highest global warming potential over a 100-year time frame, which was nearly 1.5 times that of 14.8 t ha −1 biochar amendment without N fertilization. Biochar addition increased total soil C by up to 5.75 mg g −1 and 11.69 mg g −1 (with 14.8 and 29.6 t ha −1 biochar, respectively), whereas straw incorporation increased this value by only 3.92 mg g −1 . The aboveground biomass of rice in biochar-amended soils increased to varying degrees compared with that in straw-treated soils. However, biochar application had no effects on rice yield, regardless of N fertilization. This study indicated that transforming straw to biochar was more stabilized and more suitable to mitigate greenhouse gas emissions and increase C storage in agriculture soils in Northeast China. - Highlights: • Rice straw-derived biochar significantly reduced CH 4 emission. • Rice straw-derived biochar interacted with the effects of N fertilizers on

Ion-beam technology for novel rice improvement

International Nuclear Information System (INIS)

Sobri Hussin; Azhar Mohammad; Abd Rahim Hussin; Rusli Ibrahim; Anna, L.P.K.

2009-01-01

In Malaysia, rice is the most important food crop and is cultivated in about 670,000 ha of arable land in the country. Conventional rice breeding carried out for the last 37 years resulted in the release of 34 modern varieties having an average yield of 5 t per/ha. The major objectives of the rice-breeding program in Malaysia are to develop high-yielding cultivars and to improve yield stability through higher levels of resistance to diseases, insect pests and other stresses. Most of these cultivars have been developed through conventional breeding. In this study, a new method through nuclear technology was used to develop novel superior cultivars. A total number of 100 seeds per dose (0, 10, 20, 40, 60, 80, 100, 120, 160, 200 Gy) of MR219 were exposed to carbone-ion irradiation (Ion Beam). The irradiated seeds were successfully planted under Controlled Environment Greenhouse for mutation frequency observation. After 2 months, it was revealed that the shoulder dose was significant obtained at 60 and 80 Gy. It was found that germination rates of the mutants were more than 60% for the doses range from 0 to 120 Gy and significantly decreased after 120 Gy. (Author)

Effect of potassium application on root uptake of radiocesium in rice

International Nuclear Information System (INIS)

Saito, Takashi; Ohkoshi, Satoru; Fujimura, Shigeto

2013-01-01

After the Fukushima Daiichi Nuclear Power Plant accident that occurred in March 2011, the concentration of radiocesium in brown rice that has been produced in some area has exceeded the provisional regulation value. In order to decrease the concentration of radiocesium in brown rice, we investigated the effect of the application of potassium fertilizer in rice paddy fields on the root uptake of radiocesium. The observed concentration ratio of "1"3"4Cs to "1"3"7Cs was 0.81 at the time of sample collection, and the mean concentrations of radiocesium in the soils at depths of 0-5, 5-10, and 10-15 cm were 5879 Bq kg"-"1 DW, 3223 Bq kg"-"1 DW and 1835 Bq kg"-"1 DW, respectively. The results showed that the vertical distribution of radiocesium was not uniform, although the rice paddy fields had been plowed. The concentration of radiocesium at a depth of 0-5 cm in soil collected from the 5 different rice paddy fields was in the range of 2465-7823Bq kg"-"1 DW, showing an approximately 3-fold variation between the upper and lower limits of the range. The concentration of radiocesium in brown rice cultivated in 5 different fields, was in the range of 52-485 Bq kg"-"1. The concentration of radiocesium in brown rice was found to be not correlated with that in the soil, and the soil-to-brown rice transfer factor was found to lie in the range of 0.0075-0.11. However, the radiocesium in brown rice decreased with an increase in exchangeable potassium in the soil. The concentration of radiocesium in brown rice also decreased from 370 to 138 Bq kg"-"1 upon the application of a top dressing of potassium fertilizer. Thus, the application of potassium fertilizer is shown to reduce the concentration of radiocesium in brown rice. (author)

Effects of Low Light on Agronomic and Physiological Characteristics of Rice Including Grain Yield and Quality

Directory of Open Access Journals (Sweden)

Qi-hua LIU

2014-09-01

Full Text Available Light intensity is one of the most important environmental factors that determine the basic characteristics of rice development. However, continuously cloudy weather or rainfall, especially during the grain-filling stage, induces a significant loss in yield and results in poor grain quality. Stress caused by low light often creates severe meteorological disasters in some rice-growing regions worldwide. This review was based on our previous research and related research regarding the effects of low light on rice growth, yield and quality as well as the formation of grain, and mainly reviewed the physiological metabolism of rice plants, including characteristics of photosynthesis, activities of antioxidant enzymes in rice leaves and key enzymes involved in starch synthesis in grains, as well as the translocations of carbohydrate and nitrogen. These characteristics include various grain yield and rice quality components (milling and appearance as well as cooking, eating and nutritional qualities under different rates of shading imposed at the vegetative or reproductive stages of rice plants. Furthermore, we discussed why grain yield and quality are reduced under the low light environment. Next, we summarized the need for future research that emphasizes methods can effectively improve rice grain yield and quality under low light stress. These research findings can provide a beneficial reference for rice cultivation management and breeding program in low light environments.

Similar traits, different genes? Examining convergent evolution in related weedy rice populations.

Science.gov (United States)

Thurber, Carrie S; Jia, Melissa H; Jia, Yulin; Caicedo, Ana L

2013-02-01

Convergent phenotypic evolution may or may not be associated with convergent genotypic evolution. Agricultural weeds have repeatedly been selected for weed-adaptive traits such as rapid growth, increased seed dispersal and dormancy, thus providing an ideal system for the study of convergent evolution. Here, we identify QTL underlying weedy traits and compare their genetic architecture to assess the potential for convergent genetic evolution in two distinct populations of weedy rice. F(2) offspring from crosses between an indica cultivar and two individuals from genetically differentiated U.S. weedy rice populations were used to map QTL for four quantitative (heading date, seed shattering, plant height and growth rate) and two qualitative traits. We identified QTL on nine of the twelve rice chromosomes, yet most QTL locations do not overlap between the two populations. Shared QTL among weed groups were only seen for heading date, a trait for which weedy groups have diverged from their cultivated ancestors and from each other. Sharing of some QTL with wild rice also suggests a possible role in weed evolution for genes under selection during domestication. The lack of overlapping QTL for the remaining traits suggests that, despite a close evolutionary relationship, weedy rice groups have adapted to the same agricultural environment through different genetic mechanisms. © 2012 Blackwell Publishing Ltd.

Physical mapping of Bph3, a brown planthopper resistance locus in rice

Directory of Open Access Journals (Sweden)

Jirapong Jairin

2007-09-01

Full Text Available Resistance to brown planthopper (BPH, a destructive phloem feeding insect pest, is an important objective in rice breeding programs in Thailand. The broad-spectrum resistance gene Bph3 is one of the major BPH resistance genes identified so far in cultivated rice and has been widely used in rice improvement programs. This resistance gene has been identified and mapped on the short arm of chromosome 6. In this study, physical mapping of Bph3 was performed using a BC3F3 population derived from a cross between Rathu Heenati and KDML105. Recombinant BC3F3 individuals with the Bph3 genotype were determined by phenotypic evaluation using modified mass tiller screening at the vegetative stage of rice plants. The recombination events surrounding the Bph3 locus were used to identify the co-segregate markers. According to the genome sequence of Nipponbare, the Bph3 locus was finally localized approximately in a 190 kb interval flanked by markers RM19291 and RM8072, which contain twenty-two putative genes. Additional phenotypic experiment revealed that the resistance in Rathu Heenati was decreased by increasing nitrogen content in rice plants through remobilization of nitrogen. This phenomenon should be helpful for identifying the Bph3 gene.

Environmental Life Cycle Assessment of long-term organic rice production in a Subtropical area of China

DEFF Research Database (Denmark)

Xueqing, He; Qiao, Yuhui; Liang, Long

2018-01-01

a considerable environmental impact and changing from conventional to organic rice cultivation might therefore have a potentially great impact. Meanwhile, it takes time for the organic farming systems to reach a new steady state after conversion to organic. Thus, the environmental profile of the organic products...... will change over time and it is therefore important to examine whether the difference to conventional will be reduced (and disappear) or be increased over time. The aim of the present study was therefore to assess the environmental impact of organic rice production 5 (OR5), 10 (OR10) and 15 (OR15) years since...... conversion and compare it to conventional rice (CR) in subtropical China. The life cycle assessment (LCA) method was used to assess environmental impact of rice production systems with regard to nine environmental impact categories: Non-renewable Energy Depletion (NED), Water Depletion (WD), Land Occupation...

Match sources of manure in corrective land rice high in first year of culture

Directory of Open Access Journals (Sweden)

Anderson Lange

2016-08-01

Full Text Available The objective was to evaluate the effect of phosphorus sources as a partial corrective fertilization and maintenance in upland rice cultivation. The experiment was conducted in the municipality of Alta Floresta/MT in crop year 2007/08, using the experimental design of randomized blocks with five treatments (control, simple superphosphate, triple superphosphate, Arad reactive rock phosphate and bone meal, and four replications. The following characteristics were evaluated: plant height, stem diameter, tiller number per meter, panicle number per m2, Internode length, number of grains per panicle, percentage of filled grains, voids, weight of 100 grains, return on beans, whole grain yield and productivity. Applying phosphorus influenced most of the morphological characteristics of the rice, except the stem diameter and length of the internode. There was influence of phosphate sources for the number of grains per panicle and productivity and that the two variables for the treatments with superphosphate and triple superphosphate were higher than the control. The use of triple superphosphate provided greater productivity and higher economic return in the first year of cultivation.

CERTIFICATION OF ORGANIC AGRICULTURE FOR RICE PRODUCTION IN INDONESIA

Directory of Open Access Journals (Sweden)

Dedik Budianta

2016-11-01

Full Text Available To make better the life, it is required safety foods for health. The health foods can be satisfied by organic farming. Organic farming is farming system based on biomass recycling or eliminating the use of materials as a synthetic agrochemical inputs. To determine whether the result of rice called as an organic product needs to be certified by the Organic Certification Board (OCB. According to the Indonesian National Standard (INS 6729: 2013, organic farming systems (OFS are not only limited to not use material agrochemical synthetic, but must meet the requirements of OFS in rice production ranging from cultivating, handling, storage, processing, transportation, labeling, marketing, production facilities and other materials that are allowed start on farm to off farm should be separated from conventional agriculture. The farm is just a negate the use of synthetic agrochemicals without regard to the cultivation process and the system of post-harvest organic results are said to be premium food which is not as organic food, because organic food is food produced from OFS by applying processing practices to preserve the ecosystem of sustainable, control of weeds, pests, diseases, selection and crop rotation, water management, land preparation and planting and the use of biological materials. Thus the system of organic agriculture is a holistic management system to improve and develop the agro-ecosystem health, including biodiversity, biological cycles and soil biological activity. The first step that must be done is the conversion of land for food crops from anorganic to organic farming for 2 years did not get the requisite amount of agrochemical applied to the soil for annual crop and 3 years for perennial crops. If agriculture in paddy soil can control the conventional farms into OFS, then the resulting rice is as an organic product.

Astaxanthin production from sewage of traditional Thai rice vermicelli

Science.gov (United States)

Sujarit, Chutinut; Rittirut, Waigoon; Amornlerdpison, Doungporn; Siripatana, Chairat

2017-03-01

This research aimed to investigate an optimal condition for astaxanthin production by Phaffia rhodozyma TISTR 5730 in two different media: synthetic YM medium and the medium added with coconut water and diluted with sewage from Thai traditional rice vermicelli plant (coconut water: sewage of 1:0, 1:1, 1:3 and 1:5 ration respectively). The basic medium formulation was composed of 10 g/L glucose, 3 g/L yeast extract, 0.1 g/L K2HPO4, 0.01 g/L NaCl, 0.01 g/L MgSO4 and 0.01 g/L CaCl2 with initial pH 5.5. The cultures were cultivated on 200 rpm shaking bath at 50 °C for 120 hr. It was found that P. rhodozyma TISTR 5370 grew optimally when cultivated in a mixture of coconut water and Thai rice vermicelli sewage (ratio of 1:3), with growth of 3.23 g dry biomass/L and specific astaxanthin production of 680 μg/g dry cell respectively. When fan palm sugar was added to increase reducing sugar from 10 to 15, 20 and 25 g/L, it was demonstrated that the 15 g/L formulation produced highest both dry cell weight (9.66 g/L) and astaxanthin (810 μg/g dry cell weight). Furthermore, when 0.5, 1.0 and 1.5 g/L citric acid was added as supplement, it was found that 1.0-g/L citric acid formulation gave the best result: 10.30 g/L dried cell weight and 930 μg/g dry cell weight astaxanthin. This study provides a promising alternative method of sewage reduction and valorization of wastewater from Thai traditional rice vermicelli plant.

Effects of shading on starch pasting characteristics of indica hybrid rice (Oryza sativa L..

Directory of Open Access Journals (Sweden)

Li Wang

Full Text Available Rice is an important staple crop throughout the world, but environmental stress like low-light conditions can negatively impact crop yield and quality. Using pot experiments and field experiments, we studied the effects of shading on starch pasting viscosity and starch content with six rice varieties for three years, using the Rapid Visco Analyser to measure starch pasting viscosity. Shading at different growth stages and in different rice varieties all affected the starch pasting characteristics of rice. The effects of shading on starch pasting viscosity at middle and later growth stages were greater than those at earlier stages. Shading enhanced breakdown but reduced hold viscosity and setback at tillering-elongation stage. Most pasting parameters changed significantly with shading after elongation stage. Furthermore, the responses of different varieties to shading differed markedly. The change scope of starch pasting viscosity in Dexiang 4103 was rather small after heading, while that in IIyou 498 and Gangyou 906 was small before heading. We observed clear tendencies in peak viscosity, breakdown, and pasting temperature of the five rice varieties with shading in 2010 and 2011. Correlation analysis indicated that the rice amylose content was negatively correlated with breakdown, but was positively correlated with setback. Based on our results, IIyou 498, Gangyou 906, and Dexiang 4103 had higher shade endurance, making these varieties most suitable for high-quality rice cultivation in low-light regions.

Effects of shading on starch pasting characteristics of indica hybrid rice (Oryza sativa L.).

Science.gov (United States)

Wang, Li; Deng, Fei; Ren, Wan-Jun; Yang, Wen-Yu

2013-01-01

Rice is an important staple crop throughout the world, but environmental stress like low-light conditions can negatively impact crop yield and quality. Using pot experiments and field experiments, we studied the effects of shading on starch pasting viscosity and starch content with six rice varieties for three years, using the Rapid Visco Analyser to measure starch pasting viscosity. Shading at different growth stages and in different rice varieties all affected the starch pasting characteristics of rice. The effects of shading on starch pasting viscosity at middle and later growth stages were greater than those at earlier stages. Shading enhanced breakdown but reduced hold viscosity and setback at tillering-elongation stage. Most pasting parameters changed significantly with shading after elongation stage. Furthermore, the responses of different varieties to shading differed markedly. The change scope of starch pasting viscosity in Dexiang 4103 was rather small after heading, while that in IIyou 498 and Gangyou 906 was small before heading. We observed clear tendencies in peak viscosity, breakdown, and pasting temperature of the five rice varieties with shading in 2010 and 2011. Correlation analysis indicated that the rice amylose content was negatively correlated with breakdown, but was positively correlated with setback. Based on our results, IIyou 498, Gangyou 906, and Dexiang 4103 had higher shade endurance, making these varieties most suitable for high-quality rice cultivation in low-light regions.

Reduction in uptake by rice and soybean of aromatic arsenicals from diphenylarsinic acid contaminated soil amended with activated charcoal

International Nuclear Information System (INIS)

Arao, Tomohito; Maejima, Yuji; Baba, Koji

2011-01-01

Activated charcoal (AC) amendment has been suggested as a promising method to immobilize organic contaminants in soil. We performed pot experiments with rice and soybean grown in agricultural soil polluted by aromatic arsenicals (AAs). The most abundant AA in rice grains and soybean seeds was methylphenylarsinic acid (MPAA). MPAA concentration in rice grains was significantly reduced to 2% and 3% in 0.2% AC treated soil compared to untreated soil in the first year of rice cultivation. In the second year, MPAA concentration in rice grains was significantly reduced to 15% in 0.2% AC treated soil compared to untreated soil. MPAA concentration in soybean seeds was significantly reduced to 44% in 0.2% AC treated soil compared to untreated soil. AC amendment was effective in reducing AAs in rice and soybean. - Highlights: → Pot experiments using agricultural soil contaminated with aromatic arsenicals (AAs). → Methylphenylarsinic acid (MPAA) was the most abundant AA in rice and soybean. → MPAA concentration in rice grains was dramatically reduced via 0.2% AC amendment. → MPAA concentration in soybean seeds was also reduced via 0.2% AC amendment. → AC amendment effectively reduced AAs in rice and soybean. - Activated charcoal amendment to soil contaminated with diphenylarsinic acid reduced aromatic arsenicals in rice and soybean.

Reduction in uptake by rice and soybean of aromatic arsenicals from diphenylarsinic acid contaminated soil amended with activated charcoal

Energy Technology Data Exchange (ETDEWEB)

Arao, Tomohito, E-mail: arao@affrc.go.jp [National Institute for Agro-Environmental Sciences, Soil Environmental Division, 3-1-3 Kannondai, Tsukuba, Ibaraki 305-8604 (Japan); Maejima, Yuji; Baba, Koji [National Institute for Agro-Environmental Sciences, Soil Environmental Division, 3-1-3 Kannondai, Tsukuba, Ibaraki 305-8604 (Japan)

2011-10-15

Activated charcoal (AC) amendment has been suggested as a promising method to immobilize organic contaminants in soil. We performed pot experiments with rice and soybean grown in agricultural soil polluted by aromatic arsenicals (AAs). The most abundant AA in rice grains and soybean seeds was methylphenylarsinic acid (MPAA). MPAA concentration in rice grains was significantly reduced to 2% and 3% in 0.2% AC treated soil compared to untreated soil in the first year of rice cultivation. In the second year, MPAA concentration in rice grains was significantly reduced to 15% in 0.2% AC treated soil compared to untreated soil. MPAA concentration in soybean seeds was significantly reduced to 44% in 0.2% AC treated soil compared to untreated soil. AC amendment was effective in reducing AAs in rice and soybean. - Highlights: > Pot experiments using agricultural soil contaminated with aromatic arsenicals (AAs). > Methylphenylarsinic acid (MPAA) was the most abundant AA in rice and soybean. > MPAA concentration in rice grains was dramatically reduced via 0.2% AC amendment. > MPAA concentration in soybean seeds was also reduced via 0.2% AC amendment. > AC amendment effectively reduced AAs in rice and soybean. - Activated charcoal amendment to soil contaminated with diphenylarsinic acid reduced aromatic arsenicals in rice and soybean.

Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes.

Science.gov (United States)

Liu, Wen; Ghouri, Fozia; Yu, Hang; Li, Xiang; Yu, Shuhong; Shahid, Muhammad Qasim; Liu, Xiangdong

2017-01-01

-sequencing, which proved to be a useful tool to exploit elite NBS-LRR genes in wild rice. The data here provide a foundation for future work aimed at dissecting the genetic basis of disease resistance in rice, and the two wild rice lines will be useful germplasm for the molecular improvement of cultivated rice.

New cultive medium for bioconversion of C5 fraction from sugarcane bagasse using rice bran extract

Directory of Open Access Journals (Sweden)

Debora Danielle Virginio da Silva

2014-12-01

Full Text Available The use of hemicellulosic hydrolysates in bioprocesses requires supplementation as to ensure the best fermentative performance of microorganisms. However, in light of conflicting data in the literature, it is necessary to establish an inexpensive and applicable medium for the development of bioprocesses. This paper evaluates the fermentative performance of Scheffersomyces (Pichia stipitis and Candida guilliermondii growth in sugarcane bagasse hemicellulosic hydrolysate supplemented with different nitrogen sources including rice bran extract, an important by-product of agroindustry and source of vitamins and amino acids. Experiments were carried out with hydrolysate supplemented with rice bran extract and (NH42SO4; peptone and yeast extract; (NH42SO4, peptone and yeast extract and non-supplemented hydrolysate as a control. S. stipitis produced only ethanol, while C. guilliermondii produced xylitol as the main product and ethanol as by-product. Maximum ethanol production by S. stipitis was observed when sugarcane bagasse hemicellulosic hydrolysate was supplemented with (NH42SO4, peptone and yeast extract. Differently, the maximum xylitol formation by C. guilliermondii was obtained by employing hydrolysate supplemented with (NH42SO4 and rice bran extract. Together, these findings indicate that: a for both yeasts (NH42SO4 was required as an inorganic nitrogen source to supplement sugarcane bagasse hydrolysate; b for S. stipitis, sugarcane hemicellulosic hydrolysate must be supplemented with peptone and yeast extract as organic nitrogen source; and: c for C. guilliermondii, it must be supplemented with rice bran extract. The present study designed a fermentation medium employing hemicellulosic hydrolysate and provides a basis for studies about value-added products as ethanol and xylitol from lignocellulosic materials.

Transfer of gaseous iodine from atmosphere to rough rice, brown rice and polished rice

International Nuclear Information System (INIS)

Sumiya, Misako; Uchida, Shigeo; Muramatsu, Yasuyuki; Ohmomo, Yoichiro; Yamaguchi, Shuho; Obata, Hitoshi.

1987-01-01

Experiments were carried out in order to obtain information required for establishing transfer coefficients of gaseous iodine (I 2 ) to rough rice, brown rice and polished rice. The gaseous iodine deposited on young rice plants before the heading period was scarcely found in the rough rice harvested at the full ripe stage. The biological half life of iodine in hull, however, was much slower than that in leaves of 14 days. The translocation of iodine from leaves and stalks to rough rice was not clearly recognized. Therefore, it was deduced that iodine found in brown rice mainly should originate from that deposited on the hull. The distribution ratios of iodine between rough rice and brown rice, and between brown rice and polished rice were 100:4 and 100:30 on 100 grains basis, respectively. If average normalized deposition velocity (V d(m) ) or derived deposition velocity (V s ) are given, the transfer coefficients of gaseous iodine to rough rice (TF r ), brown rice (TF b ) and polished rice (TF p ) could be calculated. (author)

The influence of acid rain on the intake of trace elements into rice plant from soils

International Nuclear Information System (INIS)

Tanizaki, Yoshiyuki; Nakamura, Masaru; Maeno, Tomokazu

1995-01-01

Rice plant samples were grown in 14 cultivative pots by irrigation using the six conditions of artificial acid rain waters (pH: 6.5, 6.0, 4.5, 3.5, 3.0 and 2.5) and tap water (pH: 7.5). The rice grain yielded were separated into three parts, i.e., polished rice, bran and chaff, and they were reduced to powder one by one. Twenty six element contents in the three parts of grain (each 14 samples) were determined by a neutron activation analysis. The contents of Cr, Fe, Ni, Zn, Cu, Rb, Mo in the polished rice increased with decreasing of pH of the irrigation waters. The contents of Se and Br, on the contrary, decreased with decreasing of pH of the irrigation waters. Significant changes of the contents were not observed for the elements Na, Al, Cl, Sc, Mn, Co, V. The enrichment factor of trace elements to soils were calculated for the polished rice, bran and chaff. The high enrichments of Cl, Mo, Zn, Se, Cu and Ni were observed in the polished rice. The elements K, Rb, Mn, Mg and Cr were highly concentrated in the bran. (author)

Interspecific variation of total seed protein in wild rice germplasm using SDS-Page

International Nuclear Information System (INIS)

Shah, S.M.A.; Hidayat-ur-Rahman; Abbasi, F.M.; Ashiq, M.; Rabbani, A.M.; Khan, I.A.; Shinwari, Z.K.; Shah, Z.

2011-01-01

Variation in seed protein of 14 wild rice species (Oryza spp.) along with cultivated rice species (O. sativa) was studied using sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) to assess genetic diversity in the rice germplasm. SDS bands were scored as present (1) or absent (0) for protein sample of each genotype. On the basis of cluster analysis, four clusters were identified at a similarity level of 0.85. O. nivara, O. rufipogon and O. sativa with AA genomes constituted the first cluster. The second cluster comprised O. punctata of BB genome and wild rice species of CC genome i.e., O. rhizomatis and O. officinalis. However, it also contained O. barthii and O. glumaepatula of AA genome. O. australiensis with EE genome, and O. latifolia, O. alta and O. grandiglumis having CCDD genomes comprised the third cluster. The fourth cluster consisted of wild rice species, O. brachyantha with EE genome along with two other wild rice species, O. longistaminata and O. meridionalis of AA genome. Overall, on the basis of total seed protein, the grouping pattern of rice genotypes was mostly compatible with their genome status. The results of the present work depicted considerable interspecific genetic variation in the investigated germplasm for total seed protein. Moreover, the results obtained in this study also suggest that analysis of seed protein can also provide a better understanding of genetic affinity of the germplasm. (author)

What factors influence choice of waste management practice? Evidence from rice straw management in the Philippines.

Science.gov (United States)

Launio, Cheryll C; Asis, Constancio A; Manalili, Rowena G; Javier, Evelyn F; Belizario, Annabelle F

2014-02-01

This study applied a multinomial logit model to understand why farmers choose to burn, incorporate or remove rice straw in the field. Four hundred randomly selected farmers were interviewed in four major rice-producing provinces covering the 2009 wet and 2010 dry seasons. Results of the model with burning as the baseline category indicate farm type, location dummies, number of household members with older than 13 years, cow ownership and distance from farm to house as significant variables influencing farmers' choice of straw incorporation or removal over burning. Significant perception variables are the negative impacts of open-field burning, awareness of environmental regulations and attitude towards incentives. Other factors significantly influencing the decision to incorporate over-burn are training attendance and perceptions of effects of straw incorporation. Income from non-rice farming, total area cultivated, tenure status, presence of burning and solid waste management provincial ordinances are significant factors affecting choice to remove over burn. Continually providing farmers' training in rice production, increasing demand for rice straw for other uses, and increasing awareness of environmental laws and regulations are policy directions recommended.

Sustainable reuse of rice residues as feedstocks in vermicomposting for organic fertilizer production.

Science.gov (United States)

Shak, Katrina Pui Yee; Wu, Ta Yeong; Lim, Su Lin; Lee, Chieh Ai

2014-01-01

Over the past decade, rice (Oryza sativa or Oryza glaberrima) cultivation has increased in many rice-growing countries due to the increasing export demand and population growth and led to a copious amount of rice residues, consisting mainly of rice straw (RS) and rice husk (RH), being generated during and after harvesting. In this study, Eudrilus eugeniae was used to decompose rice residues alone and rice residues amended with cow dung (CD) for bio-transformation of wastes into organic fertilizer. Generally, the final vermicomposts showed increases in macronutrients, namely, calcium (11.4-34.2%), magnesium (1.3-40.8%), phosphorus (1.2-57.3%), and potassium (1.1-345.6%) and a decrease in C/N ratio (26.8-80.0%) as well as increases in heavy metal content for iron (17-108%), copper (14-120%), and manganese (6-60%) after 60 days of vermicomposting. RS as a feedstock was observed to support healthier growth and reproduction of earthworms as compared to RH, with maximum adult worm biomass of 0.66 g/worm (RS) at 60 days, 31 cocoons (1RS:2CD), and 23 hatchlings (1RS:1CD). Vermicomposting of RS yielded better results than RH among all of the treatments investigated. RS that was mixed with two parts of CD (1RS:2CD) showed the best combination of nutrient results as well as the growth of E. eugeniae. In conclusion, vermicomposting could be used as a green technology to bio-convert rice residues into nutrient-rich organic fertilizers if the residues are mixed with CD in the appropriate ratio.

Yield-enhancing heterotic QTL transferred from wild species to cultivated rice Oryza sativa L.

Science.gov (United States)

Gaikwad, Kiran B; Singh, Naveen; Bhatia, Dharminder; Kaur, Rupinder; Bains, Navtej S; Bharaj, Tajinder S; Singh, Kuldeep

2014-01-01

Utilization of "hidden genes" from wild species has emerged as a novel option for enrichment of genetic diversity for productivity traits. In rice we have generated more than 2000 lines having introgression from 'A' genome-donor wild species of rice in the genetic background of popular varieties PR114 and Pusa44 were developed. Out of these, based on agronomic acceptability, 318 lines were used for developing rice hybrids to assess the effect of introgressions in heterozygous state. These introgression lines and their recurrent parents, possessing fertility restoration ability for wild abortive (WA) cytoplasm, were crossed with cytoplasmic male sterile (CMS) line PMS17A to develop hybrids. Hybrids developed from recurrent parents were used as checks to compare the performance of 318 hybrids developed by hybridizing alien introgression lines with PMS17A. Seventeen hybrids expressed a significant increase in yield and its component traits over check hybrids. These 17 hybrids were re-evaluated in large-size replicated plots. Of these, four hybrids, viz., ILH299, ILH326, ILH867 and ILH901, having introgressions from O. rufipogon and two hybrids (ILH921 and ILH951) having introgressions from O. nivara showed significant heterosis over parental introgression line, recurrent parents and check hybrids for grain yield-related traits. Alien introgressions were detected in the lines taken as male parents for developing six superior hybrids, using a set of 100 polymorphic simple sequence repeat (SSR) markers. Percent introgression showed a range of 2.24 from in O. nivara to 7.66 from O. rufipogon. The introgressed regions and their putative association with yield components in hybrids is reported and discussed.

Rice management interventions to mitigate greenhouse gas emissions: a review.

Science.gov (United States)

Hussain, Saddam; Peng, Shaobing; Fahad, Shah; Khaliq, Abdul; Huang, Jianliang; Cui, Kehui; Nie, Lixiao

2015-03-01

Global warming is one of the gravest threats to crop production and environmental sustainability. Rice, the staple food of more than half of the world's population, is the most prominent cause of greenhouse gas (GHG) emissions in agriculture and gives way to global warming. The increasing demand for rice in the future has deployed tremendous concerns to reduce GHG emissions for minimizing the negative environmental impacts of rice cultivation. In this review, we presented a contemporary synthesis of existing data on how crop management practices influence emissions of GHGs in rice fields. We realized that modifications in traditional crop management regimes possess a huge potential to overcome GHG emissions. We examined and evaluated the different possible options and found that modifying tillage permutations and irrigation patterns, managing organic and fertilizer inputs, selecting suitable cultivar, and cropping regime can mitigate GHG emissions. Previously, many authors have discussed the feasibility principle and the influence of these practices on a single gas or, in particular, in the whole agricultural sector. Nonetheless, changes in management practices may influence more than one gas at the same time by different mechanisms or sometimes their effects may be antagonistic. Therefore, in the present attempt, we estimated the overall global warming potential of each approach to consider the magnitude of its effects on all gases and provided a comprehensive assessment of suitable crop management practices for reducing GHG emissions in rice culture.

Water-saving ground cover rice production system reduces net greenhouse gas fluxes in an annual rice-based cropping system

Science.gov (United States)

Yao, Z.; Du, Y.; Tao, Y.; Zheng, X.; Liu, C.; Lin, S.; Butterbach-Bahl, K.

2014-11-01

To safeguard food security and preserve precious water resources, the technology of water-saving ground cover rice production system (GCRPS) is being increasingly adopted for rice cultivation. However, changes in soil water status and temperature under GCRPS may affect soil biogeochemical processes that control the biosphere-atmosphere exchanges of methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2). The overall goal of this study is to better understand how net ecosystem greenhouse gas exchanges (NEGE) and grain yields are affected by GCRPS in an annual rice-based cropping system. Our evaluation was based on measurements of the CH4 and N2O fluxes and soil heterotrophic respiration (CO2 emissions) over a complete year, and the estimated soil carbon sequestration intensity for six different fertilizer treatments for conventional paddy and GCRPS. The fertilizer treatments included urea application and no N fertilization for both conventional paddy (CUN and CNN) and GCRPS (GUN and GNN), and solely chicken manure (GCM) and combined urea and chicken manure applications (GUM) for GCRPS. Averaging across all the fertilizer treatments, GCRPS increased annual N2O emission and grain yield by 40 and 9%, respectively, and decreased annual CH4 emission by 69%, while GCRPS did not affect soil CO2 emissions relative to the conventional paddy. The annual direct emission factors of N2O were 4.01, 0.09 and 0.50% for GUN, GCM and GUM, respectively, and 1.52% for the conventional paddy (CUN). The annual soil carbon sequestration intensity under GCRPS was estimated to be an average of -1.33 Mg C ha-1 yr-1, which is approximately 44% higher than the conventional paddy. The annual NEGE were 10.80-11.02 Mg CO2-eq ha-1 yr-1 for the conventional paddy and 3.05-9.37 Mg CO2-eq ha-1 yr-1 for the GCRPS, suggesting the potential feasibility of GCRPS in reducing net greenhouse effects from rice cultivation. Using organic fertilizers for GCRPS considerably reduced annual emissions of CH4

Separation of allelopathy from resource competition using rice/barnyardgrass mixed-cultures.

Directory of Open Access Journals (Sweden)

Hai Bin He

Full Text Available Plant-plant interference is the combined effect of allelopathy, resource competition, and many other factors. Separating allelopathy from resource competition is almost impossible in natural systems but it is important to evaluate the relative contribution of each of the two mechanisms on plant interference. Research on allelopathy in natural and cultivated plant communities has been hindered in the absence of a reliable method that can separate allelopathic effect from resource competition. In this paper, the interactions between allelopathic rice accession PI312777, non-allelopathic rice accession Lemont and barnyardgrass were explored respectively by using a target (rice-neighbor (barnyardgrass mixed-culture in hydroponic system. The relative competitive intensity (RCI, the relative neighbor effect (RNE and the competitive ratio (CR were used to quantify the intensity of competition between each of the two different potentially allelopathic rice accessions and barnyardgrass. Use of hydroponic culture system enabled us to exclude any uncontrolled factors that might operate in the soil and we were able to separate allelopathy from resource competition between each rice accession and barnyardgrass. The RCI and RNE values showed that the plant-plant interaction was positive (facilitation for PI312777 but that was negative (competition for Lemont and barnyardgrass in rice/barnyardgrass mixed-cultures. The CR values showed that one PI312777 plant was more competitive than 2 barnyardgrass plants. The allelopathic effects of PI312777 were much more intense than the resource competition in rice/barnyardgrass mixed cultures. The reverse was true for Lemont. These results demonstrate that the allelopathic effect of PI312777 was predominant in rice/barnyardgrass mixed-cultures. The most significant result of our study is the discovery of an experimental design, target-neighbor mixed-culture in combination with competition indices, can successfully

Effects of ozone on growth, yield and leaf gas exchange rates of four Bangladeshi cultivars of rice (Oryza sativa L.)

International Nuclear Information System (INIS)

Akhtar, Nahid; Yamaguchi, Masahiro; Inada, Hidetoshi; Hoshino, Daiki; Kondo, Taisuke; Fukami, Motohiro; Funada, Ryo; Izuta, Takeshi

2010-01-01

To assess the effects of tropospheric O 3 on rice cultivated in Bangladesh, four Bangladeshi cultivars (BR11, BR14, BR28 and BR29) of rice (Oryza sativa L.) were exposed daily to charcoal-filtered air or O 3 at 60 and 100 nl l -1 (10:00-17:00) from 1 July to 28 November 2008. The whole-plant dry mass and grain yield per plant of the four cultivars were significantly reduced by the exposure to O 3 . The exposure to O 3 significantly reduced net photosynthetic rate of the 12th and flag leaves of the four cultivars. The sensitivity to O 3 of growth, yield and leaf gas exchange rates was not significantly different among the four cultivars. The present study suggests that the sensitivity to O 3 of yield of the four Bangladeshi rice cultivars is greater than that of American rice cultivars and is similar to that of Japanese rice cultivars and that O 3 may detrimentally affect rice production in Bangladesh. - Bangladeshi cultivars of rice are sensitive to O 3 below 100 ppb.

The use of 32P Method to Evaluate the Growth of Lowland Rice Cultivated in a System of Rice Intensification (SRI

Directory of Open Access Journals (Sweden)

A. Citraresmini

2013-08-01

Full Text Available A pot experiment has been conducted to evaluate the growth of the Dyah Suci, a lowland rice variety, in an SRI (System of Rice Intensification planting system. The phosphorus-32 (32P isotope technique was used to evaluate the growth of plants in relation with their phosphorus uptake. The uptake was assumed to vary in the same direction as the growth of the plant. The 32P uptake is assumed to vary in the opposite direction to the plant’s total phosphorus uptake. Here the 32P uptake is expressed in count per minutes (cpm which is then transformed to disintegration per minute (dpm. The results show that, in terms of promoting the plant’s uptake of phosphorus, the SRI planting system is superior to the conventional planting system, and it is manifested in the higher dry weight of straw and grain. From this experiment it is concluded that the 32P method can be used satisfactorily as a tool for explaining the relation between P-uptake and plant growth

France: the programme of festivities is unveiled

CERN Multimedia

2004-01-01

The programme of events to be held in the local French area in honour of CERN's fiftieth anniversary was unveiled in the CMS hall on 26 April at a ceremony attended by many local authority representatives.

Analisis Ekonomi Kegiatan Penyuluhan Tentang Penerapan System Of Rice Intensification (SRI di Tujuh Kabupaten Provinsi Bali: Analisis SEM

Directory of Open Access Journals (Sweden)

I Gede Setiawan Adi Putra

2012-10-01

Full Text Available Despite the SRI’s higher yield potential, the Subak member rice farmers are still reluctant to adopt this new way of cultivating rice. In about five years since its introduction to Bali, only 288 rice farmers have adopted it. This slow rate of adoption became a problem worth to investigate. In this conjunction, this study attempted to disclose the extent of SRI adoption amongst these farmers, and to explain how factors such as farmer’s personal characteristics, perceptions about SRI, attitudes toward SRI, Self-Reliance, and Extension workers’ as well as the heads of Subak competencies jointly affected the adoption behavior of the Balinese rice farmers. To attain these objectives an ex post facto study was designed. A random sample of 104 rice farmers was thereafter selected and interviewed using a structured questionnaire. Data were then analyzed by employing the Structural Equation Model (SEM procedure with the Lisrel Version 8.3 program. The study concluded that the extent of adoption of the 9 components of SRI amongst the Balinese rice farmers were still diverse, and the intensity of the above factors’ effects on the SRI adoption amongst the Balinese rice farmers ranged from weak to moderate.

Competitive and Allelopathic Effects of Wild Rice Accessions (Oryza longistaminata) at Different Growth Stages.

Science.gov (United States)

Shen, Shicai; Xu, Gaofeng; Clements, David Roy; Jin, Guimei; Zhang, Fudou; Tao, Dayun; Xu, Peng

2016-01-01

The competitive and allelopathic effects of wild rice (Oryza longistaminata) accessions on barnyard grass at different growth stages determined by days after sowing (0, 30, 60 and 90 days) were studied in greenhouse pot experiments. Wild rice accession RL159 exhibited the greatest height and tillering. The weed suppression rates of wild rice accessions OL and F1 on barnyard grass were significantly higher than for other rice accessions, with the lowest being O. sativa cultivar RD23. The highest suppression rates of OL and F1 were 80.23 and 73.96% at barnyard grass growth stages of 90 days and 60 days. At a 90 growth stage, wild rice accessions RL159 and RL169 caused 61.33 and 54.51% inhibition in barnyard grass growth, respectively. Under the same conditions, the competitive inhibition rates of OL, F1, RL159, RL169 and RL219 against barnyard grass were markedly lower than their weed suppressive effects, but were relatively similar for RD23. The allelopathic inhibition of OL and F1 on barnyard grass was significantly higher than other rice accessions. The highest allelopathic rates of OL and F1 were 60.61 and 56.87% at the 0 day growth stage. It is concluded that wild rice accessions OL and F1 exhibited the highest allelopathic activity along with moderate competitive ability against barnyard grass; wild rice accession RL159 had the highest competitive ability and moderate allelopathic activity on barnyard grass. Thus, the three wild rice accessions OL, F1 and RL159 could be used as ideal breeding materials for cultivated rice improvement.

Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection

Directory of Open Access Journals (Sweden)

Yiming Wang

2014-12-01

Full Text Available Rice blast disease caused by Magnaporthe oryzae is one of the most serious diseases of cultivated rice (Oryza sativa L. in most rice-growing regions of the world. In order to investigate early response genes in rice, we utilized the transcriptome analysis approach using a 300 K tilling microarray to rice leaves infected with compatible and incompatible M. oryzae strains. Prior to the microarray experiment, total RNA was validated by measuring the differential expression of rice defense-related marker genes (chitinase 2, barwin, PBZ1, and PR-10 by RT-PCR, and phytoalexins (sakuranetin and momilactone A with HPLC. Microarray analysis revealed that 231 genes were up-regulated (>2 fold change, p < 0.05 in the incompatible interaction compared to the compatible one. Highly expressed genes were functionally characterized into metabolic processes and oxidation-reduction categories. The oxidative stress response was induced in both early and later infection stages. Biotic stress overview from MapMan analysis revealed that the phytohormone ethylene as well as signaling molecules jasmonic acid and salicylic acid is important for defense gene regulation. WRKY and Myb transcription factors were also involved in signal transduction processes. Additionally, receptor-like kinases were more likely associated with the defense response, and their expression patterns were validated by RT-PCR. Our results suggest that candidate genes, including receptor-like protein kinases, may play a key role in disease resistance against M. oryzae attack.

Physical, chemical, and biological properties of soil under soybean cultivation and at an adjacent rainforest in Amazonia

Science.gov (United States)

T.P. Beldini; R.C. Oliveira Junior; Michael Keller; P.B. de Camargo; P.M. Crill; A. Damasceno da Silva; D. Bentes dos Santos; D. Rocha de Oliveira

2015-01-01

Land-use change in the Amazon basin has occurred at an accelerated pace during the last decade, and it is important that the effects induced by these changes on soil properties are better understood. This study investigated the chemical, physical, and biological properties of soil in a field under cultivation of soy and rice, and at an adjacent primary rain forest....

Characterization of 140 Japanese and world rice collections cultivated in Nihonmatsu-city in Fukushima in terms of radiocesium activity concentrations in seed grains and straws to explore rice cultivars with low radiocesium accumulation

International Nuclear Information System (INIS)

Katsuhiro Kojima; Djedidi Salem

2017-01-01

We studied varietal difference in radiocesium accumulation by using Japanese and World rice collection for future development of low accumulation varieties. As a result, the radiocesium activity concentration varied by 12- and 22-fold in seed grains and straws, respectively. When we examined the seed grain to straw ratio of radiocesium activity concentration, paddy rice cultivars of Japonica sub-species showed a lower result than Indica and Javanica paddy rice cultivars. These observations suggest that the Japonica paddy rice cultivars may have the property of repressing radioactive cesium translocation to edible parts. (author)

Rice grain yield as affected by subsoiling, compaction on sowing furrow and seed treatment

Directory of Open Access Journals (Sweden)

Veneraldo Pinheiro

2016-05-01

Full Text Available ABSTRACT This study aimed to determine the effects of subsoiling, compaction on sowing furrow and seed treatments with insecticides on the grain yield of upland rice cultivated under no-tillage. Two experiments were carried out, one in an area with and the other in an area without subsoiling, in which five seed treatments combined with five compaction pressures on the sowing furrow were compared in a randomized block design, in a factorial scheme, with three replicates. The seed treatments were: T0 - without treatment, T1 - imidacloprid + thiodicarb, T2 - thiamethoxam, T3 - carbofuran, and T4 - fipronil + pyraclostrobin + thiophanate methyl. The compaction pressures were: 25, 42, 126, 268 and 366 kPa. Subsoiling positively affected rice yield in the presence of higher compaction pressures on the sowing furrow. Seed treatment was effective at increasing rice grain yield only at the lowest compaction pressures. Rice yield showed quadratic response to compaction on the sowing furrow, with maximum values obtained at pressures ranging from 238.5 to 280.3 kPa.

Geochemical patterns and microbial contribution to iron plaque formation in the rice plant rhizosphere

Science.gov (United States)

Maisch, Markus; Murata, Chihiro; Unger, Julia; Kappler, Andreas; Schmidt, Caroline

2015-04-01

Rice is the major food source for more than half of the world population and 80 percent of the worldwide rice cultivation is performed on water logged paddy soils. The establishment of reducing conditions in the soil and across the soil-water interface not only stimulates the microbial production and release of the greenhouse gas methane. These settings also create optimal conditions for microbial iron(III) reduction and therefore saturate the system with reduced ferrous iron. Through the reduction and dissolution of ferric minerals that are characterized by their high surface activity, sorbed nutrients and contaminants (e.g. arsenic) will be mobilized and are thus available for uptake by plants. Rice plants have evolved a strategy to release oxygen from their roots in order to prevent iron toxification in highly ferrous environments. The release of oxygen to the reduced paddy soil causes ferric iron plaque formation on the rice roots and finally increases the sorption capacity for toxic metals. To this date the geochemical and microbiological processes that control the formation of iron plaque are not deciphered. It has been hypothesized that iron(II)-oxidizing bacteria play a potential role in the iron(III) mineral formation along the roots. However, not much is known about the actual processes, mineral products, and geochemical gradients that establish within the rhizosphere. In the present study we have developed a growth set-up that allows the co-cultivation of rice plants and iron(II)-oxidizing bacteria, as well as the visual observation and in situ measurement of geochemical parameters. Oxygen and dissolved iron(II) gradients have been measured using microelectrodes and show geochemical hot spots that offer optimal growth conditions for microaerophilic iron(II) oxidizers. First mineral identification attempts of iron plaque have been performed using Mössbauer spectroscopy and microscopy. The obtained results on mineraology and crystallinity have been

Effect of rice husk biochar application to soil insect diversity on potato cultivation

Science.gov (United States)

Meilin, A.; Rubiana, R.

2018-02-01

High intensity of disease infection and the intensive use of fertilizers and pesticidescause saturated fertilizer and pesticide to the land. Remediation using biochar rice husk is one of the technology to decrease fertilizer and pesticide residue. The diversity of soil insects can be used as bioindicators because of their existence dependsg on soil structure and condition. This study was aimed to study the diversity and structure communities of soil insect in potatoes on difference husk rice biochar application. The sampling of soil insects was done on potato farmer’s land with four treatments i.e control (farmers’ technique), trichokompos without biochar, trichokompos + biochar with dose 1 ton/ha, and trichokompos + biochar with dose 2 ton / ha. At each point a single pitfall trap was installed for two nights and then it was taken for identification. The results showed that biochar application had significant effect on the number of soil insect species (P = 0.037). The soil insect species composition pattern also showed significant differences between the four treatments (R: 0.2306, Pvalue = 0.001). This mean that the application of biochar affects the number of insects species and plays a role in the formation of soil insect diversity beta patterns.

Interactive effects of straw-derived biochar and N fertilization on soil C storage and rice productivity in rice paddies of Northeast China

Energy Technology Data Exchange (ETDEWEB)

Sui, Yanghui [Rice Research Institute, Shenyang Agricultural University, Shenyang 110866 (China); Gao, Jiping [Rice Research Institute, Shenyang Agricultural University, Shenyang 110866 (China); Liaoning Biochar Engineering & Technology Research Center, Shenyang Agricultural University, Dongling Rd, Shenyang 110866 (China); Liu, Caihong; Zhang, Wenzhong [Rice Research Institute, Shenyang Agricultural University, Shenyang 110866 (China); Lan, Yu [Liaoning Biochar Engineering & Technology Research Center, Shenyang Agricultural University, Dongling Rd, Shenyang 110866 (China); Li, Shuhang [Rice Research Institute, Shenyang Agricultural University, Shenyang 110866 (China); Meng, Jun [Liaoning Biochar Engineering & Technology Research Center, Shenyang Agricultural University, Dongling Rd, Shenyang 110866 (China); Xu, Zhengjin, E-mail: xuzhengjin@126.com [Rice Research Institute, Shenyang Agricultural University, Shenyang 110866 (China); Tang, Liang, E-mail: tl_rice@126.com [Rice Research Institute, Shenyang Agricultural University, Shenyang 110866 (China)

2016-02-15

Impacts of biochar on greenhouse gas emissions and C sequestration in agricultural soils have been considered as the key to mitigate climate change. There is limited knowledge regarding the effects of rice straw-derived biochar and interaction with N fertilization on soil C sequestration and rice productivity in fertile paddy fields. A 2-year (2013 and 2014) consecutive field trial was performed using straw treatment (5.05 t ha{sup −1}) and biochar amendment (0, 1.78, 14.8 and 29.6 t ha{sup −1}) with or without urea application in a rice paddy in Northeast China. A super high yielding rice variety (Oryza sativa L. subsp. Japonica cv. ‘Shennong 265’) was cultivated with permanent flooding. Results showed that biochar amendments significantly decreased CH{sub 4} emissions relative to straw treatment irrespective of N fertilization, especially in N-fertilized soils with 1.78 t ha{sup −1} biochar. There were no differences in CO{sub 2} emissions with respect to biochar amendments, except for 14.8 t ha{sup −1} biochar with N fertilization. Straw treatment had the highest global warming potential over a 100-year time frame, which was nearly 1.5 times that of 14.8 t ha{sup −1} biochar amendment without N fertilization. Biochar addition increased total soil C by up to 5.75 mg g{sup −1} and 11.69 mg g{sup −1} (with 14.8 and 29.6 t ha{sup −1} biochar, respectively), whereas straw incorporation increased this value by only 3.92 mg g{sup −1}. The aboveground biomass of rice in biochar-amended soils increased to varying degrees compared with that in straw-treated soils. However, biochar application had no effects on rice yield, regardless of N fertilization. This study indicated that transforming straw to biochar was more stabilized and more suitable to mitigate greenhouse gas emissions and increase C storage in agriculture soils in Northeast China. - Highlights: • Rice straw-derived biochar significantly reduced CH{sub 4} emission. • Rice straw

The use of mutant stock for semi-dwarf plant type and early maturity as cross-breeding materials in rice (coordinated programme on semi-dwarf mutants for rice improvement in Asia and the Pacific Region - RCA)

International Nuclear Information System (INIS)

Pookamana, P.

1985-11-01

Development of semi-dwarf type varieties has led to a substantial yield increase in Thailand, where rice is cultivated on areas of about 8 million hectars. Of 19 recommended Thai rice varieties, 10 possess the DGWG gene which determines semi-dwarf character. This situation can create some problems in terms of genetic vulnerability towards pests, diseases and other adverse stresses. The authors found that susceptibility to disease and insect pests as well as poor grain quality are major drawbacks associated with the DGWG gene. With this background, the major project goal was to obtain, by mutation techniques, a new genetic source of semi-dwarfness. For this purpose 3 tall local Thai varieties (Leaung Awn 29, Niaw Sanpah Tawng and Khao Dawk Mali) with very good grain quality, were chosen as parent material. Using radiation techniques 2 glutinous and 7 non-glutinous semi-dwarf mutants were obtained. Results of agronomic trials indicated that the mutants from local varieties were more promising and higher yielding in comparison to introduced varieties from IRRI, Taiwan, China, France and the USA. The preliminary genetics analysis of these mutants indicated an allelic relationship to the DGWG gene. This result is very important for the rice breeding programme because it made available the semi-dwarf gene in a new genetic background - with desirable characteristics for cultivation in Thailand. These positive results stimulated efforts to obtain new semi-dwarf mutants from other local, lowland rice varieties such as Leaung Tawang and Leb Mue Nahng 111. 49 and 35 semi-dwarf mutants were already selected after irradiation and are now under agronomic evaluation

[Impacts of climate warming on growth period and yield of rice in Northeast China during recent two decades].

Science.gov (United States)

Hou, Wen-jia; Geng, Ting; Chen, Qun; Chen, Chang-qing

2015-01-01

By using rice growth period, yield and climate observation data during the recent two decades, the impact of climate warming on rice in Northeast China was investigated by mathematical statistics methods. The results indicated that in the three provinces of Northeast China, the average, maximum and minimum temperatures in rice growing season were on the. rise, and the rainfall presented a downward trend during 1989-2009. Compared to 1990s, the rice whole growth periods of Heilongjiang, Jilin and Liaoning provinces in 2000s were prolonged 14 d, 4.5 d and 5.1 d, respectively. The increase of temperature in May, June and September could extend the rice growth period, while that in July would shorten the growth duration. The rice growth duration of registered varieties and experiment sites had a similar increasing trend in Northeast China except for the Heilongjiang Province, and the extension of registered varieties growth period was the main factor causing the prolonged growth period of rice at experiment sites. The change in daily average, minimum and maximum temperatures all could affect the rice yield in Northeast China. The increasing temperature significantly increased the rice yield in Heilongjiang Province, especially in the west region of Sanjiang Plain. Except for the south of Liaoning Province, rice yields in other regions of Northeast China were promoted by increasing temperature. Proper measures for breeding, cultivation and farming, could be adopted to fully improve the adaptation of rice to climate warming in Northeast China.

Induction of drought tolerant mutants of rice

International Nuclear Information System (INIS)

El-Hissewy, A.A.; Abd Allah, A.

2001-01-01

The ultimate goal of crop breeding is to develop varieties with a high yield potential and desirable agronomic characteristics. In Egypt, the most important qualities sought by breeders have been high yield potential, resistance to major diseases and insects, and improved grain and eating quality. However, breeding efforts should concentrate on varieties with the potential to minimize yield losses under unfavorable conditions such as drought, and to maximize yields when conditions are favorable. Rice (Oryza sativa L.) in Egypt is completely irrigated and a significant portion of the rice cultivated area is subject to water deficit resulting from an inadequate or insufficient irrigation supply. Drought tolerance is a complex trait in that it results from the interaction of histological and physiological characters of plant with environmental factors, both above-ground and under-ground. Accordingly, root characters are closely related to drought tolerance. Little attention has been paid in Egyptian breeding programs to root characters and their relation to shoot characters. Furthermore, induced mutations are considered as one of the most important methods to induce useful mutants, especially with improved root characters, to overcome the drought problem. The present investigation aimed to study the effect of different doses of gamma rays on several characters of three Egyptian rice varieties, i.e. 'Giza 171', 'Giza 175' and 'Giza 176' and to induce one or more mutants possessing drought tolerance

Unveiling DNA structural properties of promoter regions of ...

Indian Academy of Sciences (India)

Aditya Kumar

Unveiling DNA structural properties of promoter regions of prokaryotic transcriptome and their role in gene expression. Aditya Kumar. Assistant Professor. Molecular Biology & Biotechnology. Tezpur University. Tezpur – 784028, Assam ...

Enhanced Soil Chemical Properties and Rice Yield in Acid Sulphate Soil by Application of Rice Straw

Directory of Open Access Journals (Sweden)

Siti Nurzakiah

2012-01-01

Full Text Available Swampland development such as acid sulphate soil for agricultural cultivation has various problem, including highsoil acidity, fluctuated and unpredictable water flooding and the presence of toxic elements such as Fe whichresulting in low crop yields. The research was conducted at the experimental station Belandean, Barito Kualaregency in dry season 2007. The objective of research was to study the effect of rice straw on the dynamic of soilpH, the concentration of iron and sulphate and yield on tidal land acid sulphate soil at two different water inletchannel. This research was designed in RCBD (Randomized Completely Block Design with five treatments (0, 2.5,5.0, 7.5 and 10 Mg ha-1 and four replications. Dolomite as much as 1 Mg ha-1 was also applied. This research wasdivided into two sub-units experiment i.e. two conditions of different water inlet channel. The first water channelswere placed with limestone and the second inlet was planted with Eleocharis dulcis. The results showed that (i ricestraw application did not affect the dynamic of soil pH, concentration of iron and sulphate, and (ii the highest yieldwas obtained with 7.5 Mg ha-1 of rice straw.

Rice field agroecosystem investigation : environmental and toxicological assessment; Indagine su una risaia campione: analisi ambientali e chimico-tossicologiche

Energy Technology Data Exchange (ETDEWEB)

Bari, A; Minciardi, M; Rossi, G [ENEA, Centro Ricerche Saluggia, Vercelli (Italy). Dip. Ambiente; Bonotto, F; Paonessa, F; Troiani, F [ENEA, Centro Ricerche Saluggia, Vercelli (Italy). Dip. Energia; Rosa, S [ENEA, Centro Ricrche Casaccia, Rome (Italy). Dip. Ambiente; Cormegna, M [Ente Nazionale Risi, Centro Ricerche sul Riso, Castello d` Agogna, Pavia (Italy)

1995-10-01

The rice-field agroecosystem, even if deeply anthropically determined, can be considered substitute of the plain wet lands, now almost all disappeared in the part of the territory has been considering. The aim of the research we started was the analysis and the ecological characterization of this environment and the assessment of the effects of the different agronomical practices, relating to the conservation of the biodiversity in a plain wetland. The ENEA Environmental Biology and Nature Conservation Division of Saluggia (VC) and Casaccia (Roma), in co-operation with ENEA ERG-RAD-LAB Division of Saluggia and the Rice Research Center of Castello d`Agogna (PV) associated to Rice National Society, started a preliminary research on a sample rice field, aiming to evaluate, using different methodologies, the destiny of the chemical substances (herbicides, fungicidals, heavy metals and other chemical compounds) introduced through cultivation practices or arrived by irrigation systems.

Rice-planted area extraction by time series analysis of ENVISAT ASAR WS data using a phenology-based classification approach: A case study for Red River Delta, Vietnam

Science.gov (United States)

Nguyen, D.; Wagner, W.; Naeimi, V.; Cao, S.

2015-04-01

Recent studies have shown the potential of Synthetic Aperture Radars (SAR) for mapping of rice fields and some other vegetation types. For rice field classification, conventional classification techniques have been mostly used including manual threshold-based and supervised classification approaches. The challenge of the threshold-based approach is to find acceptable thresholds to be used for each individual SAR scene. Furthermore, the influence of local incidence angle on backscatter hinders using a single threshold for the entire scene. Similarly, the supervised classification approach requires different training samples for different output classes. In case of rice crop, supervised classification using temporal data requires different training datasets to perform classification procedure which might lead to inconsistent mapping results. In this study we present an automatic method to identify rice crop areas by extracting phonological parameters after performing an empirical regression-based normalization of the backscatter to a reference incidence angle. The method is evaluated in the Red River Delta (RRD), Vietnam using the time series of ENVISAT Advanced SAR (ASAR) Wide Swath (WS) mode data. The results of rice mapping algorithm compared to the reference data indicate the Completeness (User accuracy), Correctness (Producer accuracy) and Quality (Overall accuracies) of 88.8%, 92.5 % and 83.9 % respectively. The total area of the classified rice fields corresponds to the total rice cultivation areas given by the official statistics in Vietnam (R2  0.96). The results indicates that applying a phenology-based classification approach using backscatter time series in optimal incidence angle normalization can achieve high classification accuracies. In addition, the method is not only useful for large scale early mapping of rice fields in the Red River Delta using the current and future C-band Sentinal-1A&B backscatter data but also might be applied for other rice

Degradation Processes of Pesticides Used in Potato Cultivations.

Science.gov (United States)

Kurek, M; Barchańska, H; Turek, M

Potato is one of the most important crops, after maize, rice and wheat. Its global production is about 300 million tons per year and is constantly increasing. It grows in temperate climate and is used as a source of starch, food, and in breeding industry.Potato cultivation requires application of numerous agro-technical products, including pesticides, since it can be affected by insects, weeds, fungi, and viruses. In the European Union the most frequently used pesticides in potato cultivations check are: thiamethoxam, lambda-cyhalothrin and deltamethrin (insecticides), rimsulfuron (herbicide) and metalaxyl (fungicide).Application of pesticides improves crop efficiency, however, as pesticides are not totally selective, it affects also non-target organisms. Moreover, the agrochemicals may accumulate in crops and, as a consequence, negatively influence the quality of food products and consumer health. Additional risks of plant protection products are related to their derivatives, that are created both in the environment (soil, water) and in plant organisms, since many of these compounds may exhibit toxic effects.This article is devoted to the degradation processes of pesticides used in potato crop protection. Attention is also paid to the toxicity of both parent compounds and their degradation products for living organisms, including humans. Information about the level of pesticide contamination in the environment (water, soil) and accumulation level in edible plants complement the current knowledge about the risks associated with widespread use of thiamethoxam, lambda-cyhalothrin and deltamethrin, rimsulfuron and metalaxyl in potato cultivation.

Biodiesel development from rice bran oil: Transesterification process optimization and fuel characterization

International Nuclear Information System (INIS)

Sinha, Shailendra; Agarwal, Avinash Kumar; Garg, Sanjeev

2008-01-01

Increased environmental awareness and depletion of resources are driving industry to develop viable alternative fuels from renewable resources that are environmentally more acceptable. Vegetable oil is a potential alternative fuel. The most detrimental properties of vegetable oils are its high viscosity and low volatility, and these cause several problems during their long duration usage in compression ignition (CI) engines. The most commonly used method to make vegetable oil suitable for use in CI engines is to convert it into biodiesel, i.e. vegetable oil esters using process of transesterification. Rice bran oil is an underutilized non-edible vegetable oil, which is available in large quantities in rice cultivating countries, and very little research has been done to utilize this oil as a replacement for mineral Diesel. In the present work, the transesterification process for production of rice bran oil methyl ester has been investigated. The various process variables like temperature, catalyst concentration, amount of methanol and reaction time were optimized with the objective of producing high quality rice bran oil biodiesel with maximum yield. The optimum conditions for transesterification of rice bran oil with methanol and NaOH as catalyst were found to be 55 deg. C reaction temperature, 1 h reaction time, 9:1 molar ratio of rice bran oil to methanol and 0.75% catalyst (w/w). Rice bran oil methyl ester thus produced was characterized to find its suitability to be used as a fuel in engines. Results showed that biodiesel obtained under the optimum conditions has comparable properties to substitute mineral Diesel, hence, rice bran oil methyl ester biodiesel could be recommended as a mineral Diesel fuel substitute for compression ignition (CI) engines in transportation as well as in the agriculture sector

Genetic Loci Governing Grain Yield and Root Development under Variable Rice Cultivation Conditions

Directory of Open Access Journals (Sweden)

Margaret Catolos

2017-10-01

Full Text Available Drought is the major abiotic stress to rice grain yield under unpredictable changing climatic scenarios. The widely grown, high yielding but drought susceptible rice varieties need to be improved by unraveling the genomic regions controlling traits enhancing drought tolerance. The present study was conducted with the aim to identify quantitative trait loci (QTLs for grain yield and root development traits under irrigated non-stress and reproductive-stage drought stress in both lowland and upland situations. A mapping population consisting of 480 lines derived from a cross between Dular (drought-tolerant and IR64-21 (drought susceptible was used. QTL analysis revealed three major consistent-effect QTLs for grain yield (qDTY1.1, qDTY1.3, and qDTY8.1 under non-stress and reproductive-stage drought stress conditions, and 2 QTLs for root traits (qRT9.1 for root-growth angle and qRT5.1 for multiple root traits, i.e., seedling-stage root length, root dry weight and crown root number. The genetic locus qDTY1.1 was identified as hotspot for grain yield and yield-related agronomic and root traits. The study identified significant positive correlations among numbers of crown roots and mesocotyl length at the seedling stage and root length and root dry weight at depth at later stages with grain yield and yield-related traits. Under reproductive stage drought stress, the grain yield advantage of the lines with QTLs ranged from 24.1 to 108.9% under upland and 3.0–22.7% under lowland conditions over the lines without QTLs. The lines with QTL combinations qDTY1.3+qDTY8.1 showed the highest mean grain yield advantage followed by lines having qDTY1.1+qDTY8.1 and qDTY1.1+qDTY8.1+qDTY1.3, across upland/lowland reproductive-stage drought stress. The identified QTLs for root traits, mesocotyl length, grain yield and yield-related traits can be immediately deployed in marker-assisted breeding to develop drought tolerant high yielding rice varieties.

Cultivo de Cattleya Lindley (Orchidaceae em substratos alternativos ao xaxim = Alternative substrates for Cattleya (Orchidaceae cultivation to substitute the tree fern fiber

Directory of Open Access Journals (Sweden)

Jorge Kaoro Yamakami

2006-10-01

Full Text Available Este trabalho teve como objetivo avaliar substratos alternativos ao xaxim no cultivo de um híbrido de Cattleya Lindley. Os substratos avaliados foram: xaxim; fibra de coco; casca de pínus + casca de arroz carbonizada (1:1v/v; casca de pínus+casca de arroz carbonizada (2:1v/v; casca de pínus+casca de arroz carbonizada (1:2v/v; casca de pínus e casca de arroz carbonizada. As mudas foram cultivadas em vasos de polipropileno, permanecendo em viveiro com 70% de luminosidade Os parâmetros avaliados um ano após o início do experimento foram: massa de matéria fresca total, altura da parte aérea, comprimento do pseudobulbo, comprimento da maior raiz, número de raízes, número de brotos, número de flores, pH e condutividade elétrica. O substrato constituído de fibra de coco proporcionou bons resultados, podendo ser considerado alternativo ao xaxim no cultivo deCattleya.The objective of this study was to evaluate alternative substrates tosubstitute tree fern fiber for cultivation of hybrids from the Cattleya species. Seedlings were cultivated in polypropylene vases, kept in screen shadowed nursery by a 70% of lighting. The following substrates were evaluated: tree fern fibers; coconut fiber; pinus bark+carbonized rice hull (1:1 v/v; pinus bark+carbonized rice hull (2:1 v/v; pinus bark+carbonized rice hull (1:2 v/v; pinus bark and carbonized rice hull. One year after the experiment, the followingparameters were evaluated: fresh matter mass, aerial part height, pseudobulb length, greater root length, number of buds, number of flowers, pH and electric conductivity. The substrate composed of coconut fiber showed better results, and can be used as the alternative substrate to tree fern fiber in the cultivation of Cattleya.

Prediction of methylmercury accumulation in rice grains by chemical extraction methods

International Nuclear Information System (INIS)

Zhu, Dai-Wen; Zhong, Huan; Zeng, Qi-Long; Yin, Ying

2015-01-01

To explore the possibility of using chemical extraction methods to predict phytoavailability/bioaccumulation of soil-bound MeHg, MeHg extractions by three widely-used extractants (CaCl 2 , DTPA, and (NH 4 ) 2 S 2 O 3 ) were compared with MeHg accumulation in rice grains. Despite of variations in characteristics of different soils, MeHg extracted by (NH 4 ) 2 S 2 O 3 (highly affinitive to MeHg) correlated well with grain MeHg levels. Thus (NH 4 ) 2 S 2 O 3 extraction, solubilizing not only weakly-bound and but also strongly-bound MeHg, may provide a measure of ‘phytoavailable MeHg pool’ for rice plants. Besides, a better prediction of grain MeHg levels was obtained when growing condition of rice plants was also considered. However, MeHg extracted by CaCl 2 or DTPA, possibly quantifying ‘exchangeable MeHg pool’ or ‘weakly-complexed MeHg pool’ in soils, may not indicate phytoavailable MeHg or predict grain MeHg levels. Our results provided the possibility of predicting MeHg phytoavailability/bioaccumulation by (NH 4 ) 2 S 2 O 3 extraction, which could be useful in screening soils for rice cultivation in contaminated areas. - Highlights: • MeHg extraction by (NH 4 ) 2 S 2 O 3 correlates well with its accumulation in rice grains. • MeHg extraction by (NH 4 ) 2 S 2 O 3 provides a measure of phytoavailable MeHg in soils. • Some strongly-bound MeHg could be desorbed from soils and available to rice plants. • MeHg extraction by CaCl 2 or DTPA could not predict grain MeHg levels. - Methylmercury extraction from soils by (NH 4 ) 2 S 2 O 3 could possibly be used for predicting methylmercury phytoavailability and its bioaccumulation in rice grains

The Birth of a Black Rice Gene and Its Local Spread by Introgression.

Science.gov (United States)

Oikawa, Tetsuo; Maeda, Hiroaki; Oguchi, Taichi; Yamaguchi, Takuya; Tanabe, Noriko; Ebana, Kaworu; Yano, Masahiro; Ebitani, Takeshi; Izawa, Takeshi

2015-09-01

The origin and spread of novel agronomic traits during crop domestication are complex events in plant evolution. Wild rice (Oryza rufipogon) has red grains due to the accumulation of proanthocyanidins, whereas most cultivated rice (Oryza sativa) varieties have white grains induced by a defective allele in the Rc basic helix-loop-helix (bHLH) gene. Although the events surrounding the origin and spread of black rice traits remain unknown, varieties with black grains due to anthocyanin accumulation are distributed in various locations throughout Asia. Here, we show that the black grain trait originated from ectopic expression of the Kala4 bHLH gene due to rearrangement in the promoter region. Both the Rc and Kala4 genes activate upstream flavonol biosynthesis genes, such as chalcone synthase and dihydroflavonol-4-reductase, and downstream genes, such as leucoanthocyanidin reductase and leucoanthocyanidin dioxygenase, to produce the respective specific pigments. Genome analysis of 21 black rice varieties as well as red- and white-grained landraces demonstrated that black rice arose in tropical japonica and its subsequent spread to the indica subspecies can be attributed to the causal alleles of Kala4. The relatively small size of genomic fragments of tropical japonica origin in some indica varieties indicates that refined introgression must have occurred by natural crossbreeding in the course of evolution of the black trait in rice. © 2015 American Society of Plant Biologists. All rights reserved.

Local mat-forming cyanobacteria effectively facilitate decontamination of radioactive cesium in rice fields

International Nuclear Information System (INIS)

Yamamoto, Atsushi; Yoshida, Shigeru; Okumura, Hiroshi; Inagaki, Masayo; Yamanishi, Hirokuni; Ito, Tetsuo; Furukawa, Michio

2015-01-01

The most effective and widespread method to decontaminate radioactive cesium from the Fukushima Daiichi Nuclear Power Plant Disaster was peeling topsoil. But the method had problems, such as large amounts of discarded soil and large-scale work. In nature, cyanobacteria formed biomats on the ground surface and facilitated peeling topsoil when the biomats dried. The cyanobacteria-facilitating peeling decontamination method utilized these cyanobacterial properties. Cyanobacteria are located all over Japan and 'local' cyanobacteria could be used for decontamination without introducing new species. Utilizing cyanobacteria could decrease the amount of discarded soil to about 30% and downsize the execution-scale to individual locations. Cyanobacterial biomats were easily cultivated, especially in rice fields, by maintaining wet conditions and exposure to 100 - 83% solar radiation. Shading by a thin net was helpful in maintaining an environment suitable for cyanobacteria. Nowadays, to prevent uptake of radioactive cesium into rice, K + is usually added to fertilizer in rice fields. The K + fertilization in rice fields might also enhance cyanobacterial capture of radioactive cesium, because high concentrations of K + enhanced cyanobacterial uptake of Cs + . Cyanobacteria could also mitigate the risk of radioactive cesium moving away from a decontaminating rice field. Therefore, the cyanobacteria-facilitating peeling decontamination method was proposed as an easy and safe 'D.I.Y.' method for both farmers and the environment. Besides, plowing rice fields with water before peeling improved the efficiency of this method, because plowing increased the radioactive cesium concentration in the topsoil. (author)