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Sample records for corchorus

  1. Local vegetables in Cameroon: Corchorus species used as a vegetable.

    NARCIS (Netherlands)

    Westphal-Stevels, J.M.C.

    1986-01-01

    An agro-botanical study of local vegetables in Cameroon is in preparation, including the taxonomy, identity, morphology, agronomy and nutritional value of about 70 species. Corchorus olitorius L. and other edible species of the genus Corchorus L. (Tiliaceae) are part of this study. The wide variatio

  2. Detection of Corchorus golden mosaic virus Associated with Yellow Mosaic Disease of Jute (Corchorus capsularis).

    Science.gov (United States)

    Ghosh, Raju; Palit, Paramita; Paul, Sujay; Ghosh, Subrata Kumar; Roy, Anirban

    2012-06-01

    Yellow mosaic disease, caused by a whitefly transmitted New World Begomovirus, named Corchorus golden mosaic virus (CoGMV), is emerging as a serious biotic constraint for jute fibre production in Asia. For rapid and sensitive diagnosis of the Begomovirus associated with this disease, a non-radiolabelled diagnostic probe, developed against the DNA A component of the east Indian isolate of CoGMV, detected the presence of the virus in infected plants and viruliferous whiteflies following Southern hybridization and nucleic acid spot hybridization tests. Presence of the virus was also confirmed when polymerase chain reaction amplification was performed using virus-specific primers on DNA templates isolated from infected plants and viruliferous whiteflies.

  3. SDS-PAGE Characterisation of Crude Seed and Leaf Proteins in Corchorus Species

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    Christiana Adeyinka AJALA

    2015-06-01

    Full Text Available Crude protein separation was carried out for Corchorus incisifolious, Corchorus aestuans, Corchorus tridens and Corchorus olitorious using Sodium Dodecyl Sulphate-Polyacrylamide Gel Electrophoresis (SDS-PAGE. Plants were collected both from wild and cultivated sites and samples included leaves and seeds for the electrophoretic study. Distinct polymorphism in electrophoretic banding patterns of seed and leaf proteins following SDS- PAGE was observed in the four Corchorus species studied. Forty- two polypeptide bands were observed in the seed and a total of eleven polypeptide bands were observed in the leaves of the Corchorus species studied. The electrophoretic study revealed protein bands with various intensities ranging from high, to low and faint. The results showed that there was variation in both the seed and leaf proteins of the Corchorus species studied. A dendrogram constructed based on the Single Linkage Cluster Analysis (SLCA clustering method revealed three major clusters for seeds. Cluster I consisted of C. incisifolious and C. aestuans, cluster II consisted of C. tridens, while cluster III consisted of C. olitorious. The leaf protein extracts were grouped into two clusters, cluster one containing C. incisifolious and C. aestuans, while the other contained C. tridens and C. olitorious.

  4. Molecular and biological characterization of corchorus mottle virus, a new begomovirus from Brazil.

    Science.gov (United States)

    Blawid, Rosana; Fontenele, Rafaela S; Lacorte, Cristiano; Ribeiro, Simone G

    2013-12-01

    A begomovirus infecting Orinoco jute (Corchorus hirtus) from Brazil was characterized. Molecular analysis revealed a bipartite genomic organization, which is typical of the New World begomoviruses. Sequence analysis and phylogenetic data showed that both genomic components have the closest relationship with abutilon mosaic Brazil virus, with an identity of 87.3 % for DNA-A, indicating that this virus is a member of a new begomovirus species for which the name "Corchorus mottle virus" (CoMoV) is proposed. Sida rhombifolia plants inoculated by biolistics with an infectious clone of CoMoV showed systemic vein chlorosis, mottling and leaf deformation symptoms, while Nicotiana benthamiana and tomato plants had symptomless infection. CoMoV is the first corchorus-infecting begomovirus reported in Brazil.

  5. ANTIOXIDANT ACTIVITY OF ISOLATED FLAVONOIDS FROM THE LEAVES OF CORCHORUS AESTUANS LINN.

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    Rashmika Patel * and Manish Patel

    2013-01-01

    Full Text Available Preliminary phytochemical investigation of various extracts of leaves of Corchorus aestuans Linn showed the presence of flavonoids, carbohydrates, saponins, phytosterols, phenolic compounds, triterpenoids, cardiac glycosides and tannins. An attempt has been made to isolate flavonoids and perform antioxidant potential of the same. The antioxidant activity was performed by two in-vitro testing methods, such as scavenging activity on 1, 1-diphenyl-2-picrylhydrazyl (DPPH radicals and hydroxyl radical scavenging activity by EDTA. The data obtained in these testing systems clearly established the antioxidant potency of Corchorus aestuans Linn.

  6. The draft genome of Corchorus olitorius cv. JRO-524 (Navin

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    Debabrata Sarkar

    2017-06-01

    Full Text Available Here, we present the draft genome (377.3 Mbp of Corchorus olitorious cv. JRO-524 (Navin, which is a leading dark jute variety developed from a cross between African (cv. Sudan Green and indigenous (cv. JRO-632 types. We predicted from the draft genome a total of 57,087 protein-coding genes with annotated functions. We identified a large number of 1765 disease resistance-like and defense response genes in the jute genome. The annotated genes showed the highest sequence similarities with that of Theobroma cacao followed by Gossypium raimondii. Seven chromosome-scale genetically anchored pseudomolecules were constructed with a total size of 8.53 Mbp and used for synteny analyses with the cocoa and cotton genomes. Like other plant species, gypsy and copia retrotransposons were the most abundant classes of repeat elements in jute. The raw data of our study are available in SRA database of NCBI with accession number SRX1506532. The genome sequence has been deposited at DDBJ/EMBL/GenBank under the accession LLWS00000000, and the version described in this paper will be the first version (LLWS01000000.

  7. Hydroponic rescue and regeneration of Aeschynomene, Corchorus species, and Lablab purpureus (L.) sweet genetic resources

    Science.gov (United States)

    Aeschynomene, Corchorus species, and Lablab purpureus (L. Sweet) have uses ranging from forage, vegetables, nutraceutical, and medicinal. Many of these will not flower nor produce seed when grown under normal field conditions in Griffin or Byron, GA because of juvenility, photoperiod and freeze-sens...

  8. Structural characterization of the lignin from jute (Corchorus capsularis) fibers.

    Science.gov (United States)

    del Río, José C; Rencoret, Jorge; Marques, Gisela; Li, Jiebing; Gellerstedt, Göran; Jiménez-Barbero, Jesús; Martínez, Angel T; Gutiérrez, Ana

    2009-11-11

    The structural characteristics of the lignin from jute (Corchorus capsularis ) fibers, which are used for high-quality paper pulp production, were studied. The lignin content (13.3% Klason lignin) was high compared to other nonwoody bast fibers used for pulp production. The lignin structure was characterized by pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS), 2D-NMR, and thioacidolysis. Upon Py-GC/MS, jute fibers released predominantly products from syringylpropanoid units with the S/G ratio being 2.1 and a H/G/S composition of 2:33:65. 2D-NMR of the milled wood lignin (MWL) isolated from jute fibers showed a predominance of beta-O-4' aryl ether linkages (72% of total side chains), followed by beta-beta' resinol-type linkages (16% of total side chains) and lower amounts of beta-5' phenylcoumaran (4%) and beta-1' spirodienone-type (4%) linkages and cinnamyl end groups (4%). The high predominance of the S-lignin units, together with the high proportion of beta-O-4' aryl ether linkages, which are easily cleaved during alkaline cooking, are advantageous for pulping. On the other hand, a small percentage (ca. 4%) of the lignin side chain was found to be acetylated at the gamma-carbon, predominantly over syringyl units. The analysis of desulphurated thioacidolysis dimers provided additional information on the relative abundances of the various carbon-carbon and diaryl ether bonds and the type of units (syringyl or guaiacyl) involved in each of the above linkage types. Interestingly, the major part of the beta-beta' dimers included two syringyl units, indicating that most of the beta-beta' substructures identified in the HSQC spectra were of the syringaresinol type (pinoresinol being absent), as already observed in the lignin of other angiosperms.

  9. A multiplex nested PCR assay for simultaneous detection of Corchorus golden mosaic virus and a phytoplasma in white jute (Corchorus capsularis L.).

    Science.gov (United States)

    Biswas, C; Dey, P; Satpathy, S

    2013-05-01

    A multiplex nested PCR assay was developed by optimizing reaction components and reaction cycling parameters for simultaneous detection of Corchorus golden mosaic virus (CoGMV) and a phytoplasma (Group 16Sr V-C) causing little leaf and bunchy top in white jute (Corchorus capsularis). Three sets of specific primers viz. a CoGMV specific (DNA-A region) primer, a 16S rDNA universal primer pair P1/P7 and nested primer pair R16F2n/R2 for phytoplasmas were used. The concentrations of the PCR components such as primers, MgCl2 , Taq DNA polymerase, dNTPs and PCR conditions including annealing temperature and amplification cycles were examined and optimized. Expected fragments of 1 kb (CoGMV), 674 bp (phytoplasma) and 370 bp (nested R16F2n/R2) were successfully amplified by this multiplex nested PCR system ensuring simultaneous, sensitive and specific detection of the phytoplasma and the virus. The multiplex nested PCR provides a sensitive, rapid and low-cost method for simultaneous detection of jute little leaf phytoplasma and CoGMV. Based on BLASTn analyses, the phytoplasma was found to belong to the Group 16Sr V-C. © 2013 The Society for Applied Microbiology.

  10. Growth and Photosynthetic Pigments Accumulation of Jute Mallow (Corchorus olitorius Linn. in Response to Different Levels of Magnesium Application

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    Ezekiel Dare OLOWOLAJU

    2017-06-01

    Full Text Available The hereby study investigated the effect of Magnesium application at different levels on the morphological parameters and photosynthetic pigment accumulation of Corchorus olitorius. Seeds of C. olitorius were utilized in the experiment. These seeds were sown in 2 big bowls and were supplied with 200 ml of water every day until they were fully established. After three weeks of sowing, the seedlings were transplanted into plastic pots. The treatments were: distilled water (control; nutrient solution in which the concentration of Magnesium was increased by the factor of 5 (N5, nutrient solution in which the concentration of Magnesium was increased by the factor of 10 (N10 and nutrient solution lacking Magnesium source (NMg. The seedlings were then divided into 4 regimes, with each regime containing each treatment. From the results obtained, it was observed that there was a significant effect at (P≥0.05 on the Corchorus olitorius growth parameters and photosynthetic pigment accumulation among the treatments. There was an increase in the shoot height, number of leaves, number of flowers, leaf area and the photosynthetic pigment accumulation in the seedlings treated with magnesium increased by the factor of 5 (N5 than by other treatments. The control recorded the lowest values for these parameters. It can be concluded that for an optimum growth of Corchorus olitorius, it can be inferred that the plant can do well in nutrient solution having Magnesium source (at moderate level.

  11. Genetic diversity and DNA fingerprinting in jute (Corchorus spp. based on SSR markers

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    Liwu Zhang

    2015-10-01

    Full Text Available Genetic diversity analysis and DNA finger printing are very useful in breeding programs, seed conservation and management. Jute (Corchorus spp. is the second most important natural fiber crop after cotton. DNA fingerprinting studies in jute using SSR markers are limited. In this study, 58 jute accessions, including two control varieties (Huangma 179 and Kuanyechangguo from the official variety registry in China were evaluated with 28 pairs of SSR primers. A total of 184 polymorphic loci were identified. Each primer detected 3 to 15 polymorphic loci, with an average of 6.6. The 58 jute accessions were DNA-fingerprinted with 67 SSR markers from the 28 primer pairs. These markers differentiated the 58 jute accessions from one another, with CoSSR305-120 and CoSSR174-195 differentiating Huangma 179 and Kuanyechangguo, respectively. NTSYS-pc2.10 software was used to analyze the genetic diversity in the 58 jute accessions. Their genetic similarity coefficients ranged from 0.520 to 0.910 with an average of 0.749, indicating relatively great genetic diversity among them. The 58 jute accessions were divided into four groups with the coefficient 0.710 used as a value for classification, consistent with their species and pedigrees. All these results may be useful both for protection of intellectual property rights of jute accessions and for jute improvement.

  12. Characterization of the antioxidant properties of hydrophilic and lipophilic extracts of Jute (Corchorus olitorius) leaf.

    Science.gov (United States)

    Oboh, G; Raddatz, H; Henle, T

    2009-01-01

    Corchorus olitorius (jute) is a native plant of tropical Africa and Asia, and has since spread to Australia, South America and some parts of Europe. Its leafy vegetable is popularly used in soup preparation and folk medicine for the treatment of fever, chronic cystitis, cold and tumours. A comparative study of the antioxidant properties of hydrophilic extract (HE) and lipophilic extract (LE) constituents of the leafy vegetable has been assessed. HE and LE of the leaf were prepared using water and hexane, respectively and their antioxidant properties were determined. HE had a significantly higher (P0.05) in their Fe(II) chelating ability (HE, 57.7-66.7%; LE, 56.4-61.1%). The higher 1,1-diphenyl-2-picrylhydrazyl radical-scavenging ability, reducing power and trolox equivalent antioxidant capacity of the hydrophilic extract may be due to its significantly higher (P<0.05) total phenol (630.8 mg/100 g), total flavonoid (227.8 mg/100 g) and non-flavonoid polyphenols (403.0 mg/100 g), and its high ascorbic acid content (32.6 mg/100 g). While the higher OH. scavenging ability of LE may be due to its high total carotenoid content (42.5 mg/100 g). Therefore, the additive/synergistic antioxidant activities of the hydrophilic and lipophilic constituents may contribute to the medicinal properties of C. olitorius leaf.

  13. Genetic diversity and DNA fingerprinting in jute(Corchorus spp.) based on SSR markers

    Institute of Scientific and Technical Information of China (English)

    Liwu; Zhang; Rongrong; Cai; Minhang; Yuan; Aifen; Tao; Jiantang; Xu; Lihui; Lin; Pingping; Fang; Jianmin; Qi

    2015-01-01

    Genetic diversity analysis and DNA finger printing are very useful in breeding programs,seed conservation and management. Jute(Corchorus spp.) is the second most important natural fiber crop after cotton. DNA fingerprinting studies in jute using SSR markers are limited. In this study, 58 jute accessions, including two control varieties(Huangma 179 and Kuanyechangguo) from the official variety registry in China were evaluated with 28 pairs of SSR primers. A total of 184 polymorphic loci were identified. Each primer detected 3 to 15 polymorphic loci, with an average of 6.6. The 58 jute accessions were DNA-fingerprinted with 67 SSR markers from the 28 primer pairs. These markers differentiated the 58 jute accessions from one another, with Co SSR305-120 and Co SSR174-195 differentiating Huangma 179 and Kuanyechangguo, respectively. NTSYS-pc2.10 software was used to analyze the genetic diversity in the 58 jute accessions. Their genetic similarity coefficients ranged from 0.520 to 0.910 with an average of 0.749, indicating relatively great genetic diversity among them. The 58 jute accessions were divided into four groups with the coefficient 0.710 used as a value for classification, consistent with their species and pedigrees. All these results may be useful both for protection of intellectual property rights of jute accessions and for jute improvement.

  14. Comparative molecular cytogenetic analyses of a major tandemly repeated DNA family and retrotransposon sequences in cultivated jute Corchorus species (Malvaceae).

    Science.gov (United States)

    Begum, Rabeya; Zakrzewski, Falk; Menzel, Gerhard; Weber, Beatrice; Alam, Sheikh Shamimul; Schmidt, Thomas

    2013-07-01

    The cultivated jute species Corchorus olitorius and Corchorus capsularis are important fibre crops. The analysis of repetitive DNA sequences, comprising a major part of plant genomes, has not been carried out in jute but is useful to investigate the long-range organization of chromosomes. The aim of this study was the identification of repetitive DNA sequences to facilitate comparative molecular and cytogenetic studies of two jute cultivars and to develop a fluorescent in situ hybridization (FISH) karyotype for chromosome identification. A plasmid library was generated from C. olitorius and C. capsularis with genomic restriction fragments of 100-500 bp, which was complemented by targeted cloning of satellite DNA by PCR. The diversity of the repetitive DNA families was analysed comparatively. The genomic abundance and chromosomal localization of different repeat classes were investigated by Southern analysis and FISH, respectively. The cytosine methylation of satellite arrays was studied by immunolabelling. Major satellite repeats and retrotransposons have been identified from C. olitorius and C. capsularis. The satellite family CoSat I forms two undermethylated species-specific subfamilies, while the long terminal repeat (LTR) retrotransposons CoRetro I and CoRetro II show similarity to the Metaviridea of plant retroelements. FISH karyotypes were developed by multicolour FISH using these repetitive DNA sequences in combination with 5S and 18S-5·8S-25S rRNA genes which enable the unequivocal chromosome discrimination in both jute species. The analysis of the structure and diversity of the repeated DNA is crucial for genome sequence annotation. The reference karyotypes will be useful for breeding of jute and provide the basis for karyotyping homeologous chromosomes of wild jute species to reveal the genetic and evolutionary relationship between cultivated and wild Corchorus species.

  15. Corchorus olitorius (jute) extract induced cytotoxicity and genotoxicity on human multiple myeloma cells (ARH-77).

    Science.gov (United States)

    İşeri, Özlem Darcansoy; Yurtcu, Erkan; Sahin, Feride Iffet; Haberal, Mehmet

    2013-06-01

    Corchorus olitorius L. (Malvaceae) has industrial importance in world jute production and is a widely cultivated and consumed crop in Cyprus and in some Arabic countries. The present study investigated cytotoxic and genotoxic effects of leaf extracts (LE) and seed extracts (SE) of the C. olitorius on the multiple myeloma-derived ARH-77 cells. The extracts were also evaluated for their total phenol content (TPC) and free radical scavenging activity (FRSA). C. olitorius was collected from Nicosia, Cyprus. TPC and FRSA were measured by Folin-Ciocalteu and DPPH free radical methods, respectively. Cytotoxicity was evaluated by the MTT assay (4-2048 µg/mL range), and DNA damage (at IC50 and ½IC50) was measured by the comet assay. The LE had significantly higher total phenol (78 mg GAE/g extract) than the SE (2 mg GAE/g extract) with significantly higher FRSA (IC50 LE: 23 µg/mL and IC50 SE: 10 401 µg/mL). Both LE and SE exerted cytotoxic effects on cells after 48 h. The IC50 of SE (17 µg/mL) was lower than LE (151 µg/mL), which demonstrates its higher cytotoxicity on cells. The extracts were applied at 150 and 75 µg/mL for LE and at 17 and 8.5 µg/mL for SE, and the results of the comet assay revealed that the extracts induced genotoxic damage on ARH-77 cells. In both 48 h leaf and seed extract treatments, genotoxic damage significantly increased with increasing concentrations at relevant cytotoxic concentrations. To our knowledge, this is the first report demonstrating the high cytotoxic potential of C. olitorius SE and the genotoxic potential of LE and SE.

  16. Genome size variation in Corchorus olitorius (Malvaceae s.l.) and its correlation with elevation and phenotypic traits.

    Science.gov (United States)

    Benor, Solomon; Fuchs, Jörg; Blattner, Frank R

    2011-07-01

    In this study, we report genome size variations in Corchorus olitorius L. (Malvaceae s.l.), a crop species known for its morphological plasticity and broad geographical distribution, and Corchorus capsularis L., the second widely cultivated species in the genus. Flow cytometric analyses were conducted with several tissues and nuclei isolation buffers using 69 accessions of C. olitorius and 4 accessions of C. capsularis, representing different habitats and geographical origins. The mean 2C nuclear DNA content (± SD) of C. olitorius was estimated to be 0.918 ± 0.011 pg, with a minimum of 0.882 ± 0.004 pg, and a maximum of 0.942 ± 0.004 pg. All studied plant materials were found to be diploid with 2n = 14. The genome size is negatively correlated with days to flowering (r = -0.29, p genome size and growing elevation (r = 0.59, p genome sizes of C. olitorius and C. capsularis are much smaller, and therewith closer to that of rice. The relatively small genome sizes will be of general advantage for any efforts into genomics or sequencing approaches of these species.

  17. Morphological, Histobiochemical and Molecular Characterisation of Low Lignin Phloem Fibre (llpf) Mutant of Dark Jute (Corchorus olitorius L.).

    Science.gov (United States)

    Choudhary, S B; Chowdhury, I; Singh, R K; Pandey, S P; Sharma, H K; Anil Kumar, A; Karmakar, P G; Kumari, N; Souframanien, J; Jambhulkar, S J

    2017-05-11

    Lignin is a versatile plant metabolite challenging high-end industrial applications of several plant products including jute. Application of developmental mutant in regulation of lignification in jute may open up door for much awaited jute based diversified products. In the present study, a novel dark jute (Corchorus olitorius L.) mutant with low lignin (7.23%) in phloem fibre being compared to wild-type JRO 204 (13.7%) was identified and characterised. Unique morphological features including undulated stem, petiole and leaf vein distinguished the mutant in gamma ray irradiated mutant population. Histological and biochemical analysis revealed reduced lignification of phloem fibre cells of the plant. RT-PCR analysis demonstrated temporal transcriptional regulation of CCoAMT1 gene in the mutant. The mutant was found an extremely useful model to study phloem fibre developmental biology in the crop besides acting as a donor genetic stock for low lignin containing jute fibre in dark jute improvement programme.

  18. Green corrosion inhibition of mild steel to aqueous sulfuric acid by the extract of Corchorus olitorius stems

    Science.gov (United States)

    Gobara, Mohamed; Zaghloul, Basem; Baraka, Ahmad; Elsayed, Mohamed; Zorainy, Mahmoud; Mokhtar Kotb, Mohamed; Elnabarawy, Hany

    2017-04-01

    Extract of Corchorus olitorius stems (ECS) was used as a green inhibitor for the inhibition of mild steel corrosion in 0.5 M H2SO4 solution. GC/MS was used for both qualitative and quantitative analysis of the extract. The corrosion performance of the extract was evaluated using electrochemical impedance spectroscopy, potentiodynamic polarization and weight loss. The results showed that ECS is a mixed-type inhibitor which reduces both anodic and cathodic reactions and the inhibition efficiency was reached up to 93%. Adsorption isotherm data was recorded at different temperatures and analyzed by selected adsorption isotherm models to reveal characteristics of inhibition. Thermodynamic calculations showed that the inhibition efficiency increases with increasing inhibitor concentration, and decreases with increasing temperature. Adsorption of ECS on the mild steel surface was found to be spontaneous and exothermic. Adsorption is suggested to be physisorption according to El-Awady isotherm model. Also, the scanning electron microscopy (SEM) was used to investigate the surface morphology to confirm the corrosion results.

  19. Improvement on the freeze-thaw stability of corn starch gel by the polysaccharide from leaves of Corchorus olitorius L.

    Science.gov (United States)

    Yamazaki, Eiji; Sago, Toru; Kasubuchi, Yoshiaki; Imamura, Kazuhito; Matsuoka, Toshio; Kurita, Osamu; Nambu, Hironobu; Matsumura, Yasuki

    2013-04-15

    Effect of the polysaccharide from leaves of Corchorus olitorius L. (PLC) on the freeze-thaw (FT) stability of corn starch gel was studied. PLC was incorporated into the starch gel at 0.7% and total solid was adjusted to 6.0%. The syneresis was measured by the centrifugal-filtration method and, as a result, addition of PLC reduced effectively the syneresis of the starch gel even after 5 FT cycles, which was less than one third that of the normal starch gel. The rheological changes of the starch/PLC gel during the FT treatments were evaluated while the gel remained on the rheometer plate. The starch/PLC gel had less significant changes in the rheological parameters during the FT cycles than starch/guar gum or xanthan gum gel systems. SEM images showed that PLC stabilized the gel matrix surrounding pores, which would contribute to both a lower syneresis production and a higher stability in the rheological behavior at FT.

  20. Isolation of RNA from field-grown jute (Corchorus capsularis) plant in different developmental stages for effective downstream molecular analysis.

    Science.gov (United States)

    Samanta, Pradipta; Sadhukhan, Sanjoy; Das, Subrata; Joshi, Alpana; Sen, Soumitra K; Basu, Asitava

    2011-10-01

    Jute (Corchorus capsularis), as a natural fibre producing plant species, ranks next to cotton only. Today, biotechnological approach has been considered as most accepted means for any genetic improvement of plant species. However, genetic control of the fibre development in jute has not yet been explored sufficiently for desired genetic improvement. One of the major impediments in exploring the genetic architecture in this crop at molecular level is the availability of good quality RNA from field-grown plant tissues mostly due to the presence of high amount of mucilage and phenolics. Development of a suitable RNA isolation method is becoming essential for deciphering developmental stage-specific gene expression pattern related to fibre formation in this crop species. A combination of modified hot borate buffer followed by isopycnic centrifugation (termed as HBIC) was adopted and found to be the best isolation method yielding sufficient quantity (~350-500 μg/gm fresh tissue) and good quality (A(260/280) ratio 1.88 to 1.91) RNA depending on the developmental stage of stem tissue from field-grown jute plant. The poly A(+) RNA purified from total RNA isolated by the present method was found amenable to efficient RT-PCR and cDNA library construction. The present development of RNA isolation was found to be appropriate for gene expression analysis related to fibre formation in this economically important jute plant in near future.

  1. Stability analysis of a high fibre yield and low lignin content "thick stem" mutant in tossa jute (Corchorus olitorius L.).

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    Mandal, Aninda; Datta, Animesh K

    2014-01-01

    A "thick stem" mutant of Corchorus olitorius L. was induced at M2 (0.50%, 4 h, EMS) and the true breeding mutant is assessed across generations (M5 to M7) considering morphometric traits as well as SEM analysis of pollen grains and raw jute fibres, stem anatomy, cytogenetical attributes, and lignin content in relation to control. Furthermore, single fibre diameter and tensile strength are also analysed. The objective is to assess the stability of mutant for its effective exploration for raising a new plant type in tossa jute for commercial exploitation and efficient breeding. The mutant trait is monogenic recessive to normal. Results indicate that "thick stem" mutant is stable across generations (2n = 14) with distinctive high seed and fibre yield and significantly low lignin content. Stem anatomy of the mutant shows significant enhancement in fibre zone, number of fibre pyramids and fibre bundles per pyramid, and diameter of fibre cell in relation to control. Moreover, tensile strength of mutant fibre is significantly higher than control fibre and the trait is inversely related to fibre diameter. However the mutant is associated with low germination frequency, poor seed viability, and high pollen sterility, which may be eliminated through mutational approach followed by rigorous selection and efficient breeding.

  2. Cadmium induced pathophysiology: prophylactic role of edible jute (Corchorus olitorius) leaves with special emphasis on oxidative stress and mitochondrial involvement.

    Science.gov (United States)

    Dewanjee, Saikat; Gangopadhyay, Moumita; Sahu, Ranabir; Karmakar, Sarmila

    2013-10-01

    The present study was undertaken to evaluate the protective effect of aqueous extract of Corchorus olitorius leaves (AECO) against CdCl₂ intoxication. In vitro bioassay on isolated mice hepatocytes confirmed dose dependent cytoprotective effect of AECO. The CdCl₂ (30 μM) exhibited a significantly increased levels of lipid peroxidation, protein carbonylation along with the reduction of antioxidant enzymes and reduced glutathione levels in hepatocytes. AECO (200 and 400 μg/ml) + CdCl₂ (30 μM) could significantly restore the aforementioned oxidation parameters in hepatocytes. Beside this, AECO could significantly reduce Cd-induced increase in Bad/Bcl-2 ratio and the over-expression of NF-κB, caspase 3 and caspase 9. In in vivo assay, CdCl₂ (4 mg/kg body weight, for 6 days) treated rats exhibited a significantly increased intracellular Cd accumulation, oxidative stress and DNA fragmentation in the organs. In addition, the haematological parameters were significantly altered in the CdCl₂ treated rats. Simultaneous administration of AECO (50 and 100 mg/kg body weight), could significantly restore the biochemical, antioxidant and haematological parameters near to the normal status. Histological studies of the organs supported the protective role of jute leaves. Presence of substantial quantity of phenolic compounds and flavonoids in extract may be responsible for overall protective effect. Copyright © 2013 Elsevier Ltd. All rights reserved.

  3. Bioavailability of Cadmium and Nickel to Daucus carota L. and Corchorus olitorius L. treated by Compost and Microorganisms

    Directory of Open Access Journals (Sweden)

    Mohamed Mahmoud Mohamed Ahmed

    2017-05-01

    Full Text Available The research work investigates the impact of the interaction between several rates of compost and microorganisms (bacteria, fungi, mycorrhiza and their residual effects on growth and metals (Cd and Ni uptake in carrot (Daucus carota L. and jew´s mallow (Corchorus olitorius L. grown thereafter. Soil samples were collected from agricultural areas near the superphosphate factory and used for the pot experiments. Microorganisms were isolated from the area under study of which four fungal isolates (Aspergillus niger, A. terreus, Penicillium funiculosum and Fusarium culmorum, one bacterial species (Bacillus sp. and four species of arbuscular mycorrhizal fungi (AMF (Acaulospora bireticulata, Gigaspora margarit, Glomus lamellosum and Glomus mosseae were used for inoculations in the pot experiments. Also, four compost rates were applied equivalent to 0, 5, 10, 15 t ha-1 dry compost. The application of amendments increased the biomass of carrot and jew´s mallow plants. The highest reduction of Cd and Ni contents in both plants were observed by the simultaneous applications of compost with microbes or AMF to polluted soils. The DTPA extractable values of Cd and Ni in soils of jew´s mallow plants were higher those of carrot plants. The transfer factor (TF for Cd and Ni in both plants decreased significantly (p<0.05 as the result of interaction between compost and microorganism. This study concluded that the integration between compost and microorganisms have a positive effect on reducing the bioavailability of the metal polluted soil.

  4. Development of a transgenic hairy root system in jute (Corchorus capsularis L.) with gusA reporter gene through Agrobacterium rhizogenes mediated co-transformation.

    Science.gov (United States)

    Chattopadhyay, Tirthartha; Roy, Sheuli; Mitra, Adinpunya; Maiti, Mrinal K

    2011-04-01

    Transgenic hairy root system is important in several recalcitrant plants, where Agrobacterium tumefaciens-mediated plant transformation and generation of transgenic plants are problematic. Jute (Corchorus spp.), the major fibre crop in Indian subcontinent, is one of those recalcitrant plants where in vitro tissue culture has provided a little success, and hence, Agrobacterium-mediated genetic transformation remains to be a challenging proposition in this crop. In the present work, a system of transgenic hairy roots in Corchorus capsularis L. has been developed through genetic transformation by Agrobacterium rhizogenes harbouring two plasmids, i.e. the natural Ri plasmid and a recombinant binary vector derived from the disarmed Ti plasmid of A. tumefaciens. Our findings indicate that the system is relatively easy to establish and reproducible. Molecular analysis of the independent lines of transgenic hairy roots revealed the transfer of relevant transgenes from both the T-DNA parts into the plant genome, indicating the co-transformation nature of the event. High level expression and activity of the gusA reporter gene advocate that the transgenic hairy root system, thus developed, could be applicable as gene expression system in general and for root functional genomics in particular. Furthermore, these transgenic hairy roots can be used in future as explants for plantlet regeneration to obtain stable transgenic jute plants.

  5. Corchorus Corchorus triden L.) PLANT FIBRE

    African Journals Online (AJOL)

    eobe

    ABSTRACT. The work presented here is the production of an automotive Bumper from Lalloh ... and earospace industries where weight related properties are of ... observed health risks during processing and handling, biodegradability ...

  6. Confamiliar transferability of simple sequence repeat (SSR) markers from cotton (Gossypium hirsutum L.) and jute (Corchorus olitorius L.) to twenty two Malvaceous species.

    Science.gov (United States)

    Satya, Pratik; Paswan, Pramod Kumar; Ghosh, Swagata; Majumdar, Snehalata; Ali, Nasim

    2016-06-01

    Cross-species transferability is a quick and economic method to enrich SSR database, particularly for minor crops where little genomic information is available. However, transferability of SSR markers varies greatly between species, genera and families of plant species. We assessed confamiliar transferability of SSR markers from cotton (Gossypium hirsutum) and jute (Corchorus olitorius) to 22 species distributed in different taxonomic groups of Malvaceae. All the species selected were potential industrial crop species having little or no genomic resources or SSR database. Of the 14 cotton SSR loci tested, 13 (92.86 %) amplified in G. arboreum and 71.43 % exhibited cross-genera transferability. Nine out of 11 jute SSRs (81.81 %) showed cross-transferability across genera. SSRs from both the species exhibited high polymorphism and resolving power in other species. The correlation between transferability of cotton and jute SSRs were highly significant (r = 0.813). The difference in transferability among species was also significant for both the marker groups. High transferability was observed at genus, tribe and subfamily level. At tribe level, transferability of jute SSRs (41.04 %) was higher than that of cotton SSRs (33.74 %). The tribe Byttnerieae exhibited highest SSR transferability (48.7 %). The high level of cross-genera transferability (>50 %) in ten species of Malvaceae, where no SSR resource is available, calls for large scale transferability testing from the enriched SSR databases of cotton and jute.

  7. Toxic effects of lead exposure in Wistar rats: involvement of oxidative stress and the beneficial role of edible jute (Corchorus olitorius) leaves.

    Science.gov (United States)

    Dewanjee, Saikat; Sahu, Ranabir; Karmakar, Sarmila; Gangopadhyay, Moumita

    2013-05-01

    Lead (Pb) is considered to be a multi-target toxicant. The present study was undertaken to evaluate the protective effect of aqueous extract of Corchorus olitorius leaves against Pb-acetate induced toxic manifestation in blood, liver, kidney, brain and heart of Wistar rats. The Pb-acetate (5mg/kg body weight) treated rats exhibited a significant inhibition of co-enzymes Q, antioxidant enzymes and reduced glutathione levels in the tissues. In addition, the extent of lipid peroxidation, DNA fragmentation and haematological parameters were significantly altered in the Pb-acetate treated rats as compared to control. Simultaneous administration of test extract (25, 50 and 100mg/kg body weight), could significantly restore the biochemical and haematological parameters near to the normal status through antioxidant activity and/or by preventing bioaccumulation of Pb within the tissues of experimental rats. Presence of substantial quantity of phenolics and flavonoids in the extract may be responsible for the observed protective role against Pb-intoxication. Copyright © 2012 Elsevier Ltd. All rights reserved.

  8. A complete genetic linkage map and QTL analyses for bast fibre quality traits, yield and yield components in jute (Corchorus olitorius L.).

    Science.gov (United States)

    Topdar, N; Kundu, A; Sinha, M K; Sarkar, D; Das, M; Banerjee, S; Kar, C S; Satya, P; Balyan, H S; Mahapatra, B S; Gupta, P K

    2013-01-01

    We report the first complete microsatellite genetic map of jute (Corchorus olitorius L.; 2n = 2x = 14) using an F6 recombinant inbred population. Of the 403 microsatellite markers screened, 82 were mapped on the seven linkage groups (LGs) that covered a total genetic distance of 799.9 cM, with an average marker interval of 10.7 cM. LG5 had the longest and LG7 the shortest genetic lengths, whereas LG1 had the maximum and LG7 the minimum number of markers. Segregation distortion of microsatellite loci was high (61%), with the majority of them (76%) skewed towards the female parent. Genomewide non-parametric single-marker analysis in combination with multiple quantitative trait loci (QTL)-models (MQM) mapping detected 26 definitive QTLs for bast fibre quality, yield and yield-related traits. These were unevenly distributed on six LGs, as colocalized clusters, at genomic sectors marked by 15 microsatellite loci. LG1 was the QTL-richest map sector, with the densest colocalized clusters of QTLs governing fibre yield, yield-related traits and tensile strength. Expectedly, favorable QTLs were derived from the desirable parents, except for nearly all of those of fibre fineness, which might be due to the creation of new gene combinations. Our results will be a good starting point for further genome analyses in jute.

  9. Selection of reliable reference genes for quantitative real-time PCR gene expression analysis in Jute (Corchorus capsularis) under stress treatments.

    Science.gov (United States)

    Niu, Xiaoping; Qi, Jianmin; Zhang, Gaoyang; Xu, Jiantang; Tao, Aifen; Fang, Pingping; Su, Jianguang

    2015-01-01

    To accurately measure gene expression using quantitative reverse transcription PCR (qRT-PCR), reliable reference gene(s) are required for data normalization. Corchorus capsularis, an annual herbaceous fiber crop with predominant biodegradability and renewability, has not been investigated for the stability of reference genes with qRT-PCR. In this study, 11 candidate reference genes were selected and their expression levels were assessed using qRT-PCR. To account for the influence of experimental approach and tissue type, 22 different jute samples were selected from abiotic and biotic stress conditions as well as three different tissue types. The stability of the candidate reference genes was evaluated using geNorm, NormFinder, and BestKeeper programs, and the comprehensive rankings of gene stability were generated by aggregate analysis. For the biotic stress and NaCl stress subsets, ACT7 and RAN were suitable as stable reference genes for gene expression normalization. For the PEG stress subset, UBC, and DnaJ were sufficient for accurate normalization. For the tissues subset, four reference genes TUBβ, UBI, EF1α, and RAN were sufficient for accurate normalization. The selected genes were further validated by comparing expression profiles of WRKY15 in various samples, and two stable reference genes were recommended for accurate normalization of qRT-PCR data. Our results provide researchers with appropriate reference genes for qRT-PCR in C. capsularis, and will facilitate gene expression study under these conditions.

  10. Stability Analysis of a High Fibre Yield and Low Lignin Content “Thick Stem” Mutant in Tossa Jute (Corchorus olitorius L.)

    Science.gov (United States)

    Mandal, Aninda; Datta, Animesh K.

    2014-01-01

    A “thick stem” mutant of Corchorus olitorius L. was induced at M2 (0.50%, 4 h, EMS) and the true breeding mutant is assessed across generations (M5 to M7) considering morphometric traits as well as SEM analysis of pollen grains and raw jute fibres, stem anatomy, cytogenetical attributes, and lignin content in relation to control. Furthermore, single fibre diameter and tensile strength are also analysed. The objective is to assess the stability of mutant for its effective exploration for raising a new plant type in tossa jute for commercial exploitation and efficient breeding. The mutant trait is monogenic recessive to normal. Results indicate that “thick stem” mutant is stable across generations (2n = 14) with distinctive high seed and fibre yield and significantly low lignin content. Stem anatomy of the mutant shows significant enhancement in fibre zone, number of fibre pyramids and fibre bundles per pyramid, and diameter of fibre cell in relation to control. Moreover, tensile strength of mutant fibre is significantly higher than control fibre and the trait is inversely related to fibre diameter. However the mutant is associated with low germination frequency, poor seed viability, and high pollen sterility, which may be eliminated through mutational approach followed by rigorous selection and efficient breeding. PMID:24860822

  11. Selection of reliable reference genes for quantitative real-time PCR gene expression analysis in Jute (Corchorus capsularis under stress treatments

    Directory of Open Access Journals (Sweden)

    Xiaoping eNiu

    2015-10-01

    Full Text Available To accurately measure gene expression using quantitative reverse transcription PCR (qRT-PCR, reliable reference gene(s are required for data normalization. Corchorus capsularis, an annual herbaceous fiber crop with predominant biodegradability and renewability, has not been investigated for the stability of reference genes with qRT-PCR. In this study, 11 candidate reference genes were selected and their expression levels were assessed using qRT-PCR. To account for the influence of experimental approach and tissue type, 22 different jute samples were selected from abiotic and biotic stress conditions as well as 3 different tissue types. The stability of the candidate reference genes was evaluated using geNorm, NormFinder and BestKeeper programs, and the comprehensive rankings of gene stability were generated by aggregate analysis. For the biotic stress and NaCl stress subsets, ACT7 and RAN were suitable as stable reference genes for gene expression normalization. For the PEG stress subset, UBC and DnaJ were sufficient for accurate normalization. For the tissues subset, four reference genes TUBβ, UBI, EF1α and RAN were sufficient for accurate normalization. The selected genes were further validated by comparing expression profiles of WRKY15 in various samples, and two stable reference genes were recommended for accurate normalization of qRT-PCR data. Our results provide researchers with appropriate reference genes for qRT-PCR in C. capsularis, and will facilitate gene expression study under these conditions.

  12. High-density genetic map construction and QTLs identification for plant height in white jute (Corchorus capsularis L.) using specific locus amplified fragment (SLAF) sequencing.

    Science.gov (United States)

    Tao, Aifen; Huang, Long; Wu, Guifen; Afshar, Reza Keshavarz; Qi, Jianmin; Xu, Jiantang; Fang, Pingping; Lin, Lihui; Zhang, Liwu; Lin, Peiqing

    2017-05-08

    Genetic mapping and quantitative trait locus (QTL) detection are powerful methodologies in plant improvement and breeding. White jute (Corchorus capsularis L.) is an important industrial raw material fiber crop because of its elite characteristics. However, construction of a high-density genetic map and identification of QTLs has been limited in white jute due to a lack of sufficient molecular markers. The specific locus amplified fragment sequencing (SLAF-seq) strategy combines locus-specific amplification and high-throughput sequencing to carry out de novo single nuclear polymorphism (SNP) discovery and large-scale genotyping. In this study, SLAF-seq was employed to obtain sufficient markers to construct a high-density genetic map for white jute. Moreover, with the development of abundant markers, genetic dissection of fiber yield traits such as plant height was also possible. Here, we present QTLs associated with plant height that were identified using our newly constructed genetic linkage groups. An F8 population consisting of 100 lines was developed. In total, 69,446 high-quality SLAFs were detected of which 5,074 SLAFs were polymorphic; 913 polymorphic markers were used for the construction of a genetic map. The average coverage for each SLAF marker was 43-fold in the parents, and 9.8-fold in each F8 individual. A linkage map was constructed that contained 913 SLAFs on 11 linkage groups (LGs) covering 1621.4 cM with an average density of 1.61 cM per locus. Among the 11 LGs, LG1 was the largest with 210 markers, a length of 406.34 cM, and an average distance of 1.93 cM between adjacent markers. LG11 was the smallest with only 25 markers, a length of 29.66 cM, and an average distance of 1.19 cM between adjacent markers. 'SNP_only' markers accounted for 85.54% and were the predominant markers on the map. QTL mapping based on the F8 phenotypes detected 11 plant height QTLs including one major effect QTL across two cultivation locations, with each QTL

  13. Induction of Apoptosis by Ethanolic Extract of Corchorus olitorius Leaf in Human Hepatocellular Carcinoma (HepG2 Cells via a Mitochondria-Dependent Pathway

    Directory of Open Access Journals (Sweden)

    Shih-Fang Tsang

    2012-08-01

    Full Text Available Corchorus olitorius L., is a culinary and medicinal herb, widely used as a vegetable in several countries in Asia. Many studies have shown that C. olitorius contains several antioxidants and exhibits anti-inflammatory and anti-proliferative activities in various in vitro and in vivo settings. Recently, C. olitorius has been approved for its antitumor activity; however, the underlying molecular mechanisms remain unclear. The goal of this study was to investigate the effects of ethanol extract of C. olitorius (ECO on the growth of human hepatocellular carcinoma (HepG2 cells and gain some insights into the underlying mechanisms of its action. We found that HepG2 cells, treated with ECO for 24 h at a concentration higher than 12.5 μg/mL, displayed a strong reduction in cell viability, whereas normal FL83B hepatocytes were not affected. DNA fragmentation and nuclear condensation were evidenced by the increased subG1 population of ECO-treated HepG2 cells. ECO triggered the activation of procaspases-3 and -9 and caused the cleavage of downstream substrate, poly ADP-ribose polymerase (PARP, followed by down-regulation of the inhibitor of caspase-activated DNase (ICAD signaling. Moreover, the increased release of cytochrome c from mitochondria with decreased membrane potential demonstrated the apoptosis induced through the caspases cascade. Our findings indicated that ECO might be effective against hepatocellular carcinoma through induction of apoptosis via mitochondria-dependent pathway.

  14. rhizosphere and non-rhizosphere soil mycoflora of corchorus olitorius

    African Journals Online (AJOL)

    Olahan et. al

    concluded that the jute plants benefitted from the microorganisms. (fungi) in their ... ecosystem. In relation to plant growth, soil can be distinguished .... Rhizosphere effect is an indication of the degree of stimulation of .... sustainable agriculture.

  15. Characterization of Morphological Diversity of Jute Mallow (Corchorus spp.

    Directory of Open Access Journals (Sweden)

    Munguatosha Ngomuo

    2017-01-01

    Full Text Available Jute mallow is a traditional leaf vegetable that is an important part of daily diet for the majority of people in rural areas in sub-Saharan Africa. Here we employed quantitative and qualitative phenotypic traits to assess the morphological diversity of 90 accessions using univariate and multivariate analyses. Field experiments were conducted for two seasons to identify accessions suitable for leaf yield. The accessions were significantly variable in all traits. Highest variability among accessions was found in harvest index, biomass yield, and weight of 1000 seeds. The traits that significantly correlated with biomass yield include plant height (r=0.448, petiole length (r=0.237, primary branches (r=0.319, and number of leaves per plant (r=0.333. Principal component analysis showed that the first five PCs with eigenvalues ≥1 explained 72.9% of the total variability in the accessions. Pods per plant, primary branches, secondary branches, and number of leaves per plant accounted for highest variability in PC1. Cluster analysis grouped the accessions into five major clusters mainly based on their origin. Thus, the collection displayed high variation in morphological traits, particularly those related to leaf yield. These accessions are therefore useful in breeding for the improvement of the crop and germplasm management.

  16. Genetic variability assessment of accessions of Corchorus olitorius L ...

    African Journals Online (AJOL)

    SAM

    2014-05-14

    May 14, 2014 ... seven highly valued indigenous leafy vegetables (ILV) in. Nigeria. Certain problems ... Nigeria, which include the boosting of the production of jute fiber for textile and wearing apparel, there is need to characterize further the ...

  17. Response of Jute Mallow (Corchorus olitorius L.) to organic manure ...

    African Journals Online (AJOL)

    SARAH

    2015-08-31

    Aug 31, 2015 ... urea at 100 kg.ha-1 (5.4 t.ha-1), while control recorded lower values. A significant ...... organic manure and nitrogen fixing bacteria on some essential oil .... unburnt rice husk dust on maize yield and soil physico-chemical ...

  18. PRELIMIARY PHYTOCHEMICAL ANALYSIS AND ANTIFUNGAL ACTIVITIES OF CRUDE EXTRACTS OF ZALEYA PENTANDRA AND CORCHORUS DEPRESSUS LINN.

    Science.gov (United States)

    Afzal, Samina; Chaudhary, Bashir Ahmad; Ahmad, Ashfaq; Afzali, Khurram

    2015-01-01

    Zaleya pentandra (Zp) and Cochoms depressus Linn. (Cd) have been considered as herbs with potential therapeutic benefits. Zp and Cd belong to the important family Aizoaceae and Tiliaceae, respectively. The extractions were carried out successively with methanol and dichloromethane at room temperature for 24 h. Preliminary phytochemical screening of Zp and Cd revealed the presence of steroids, alkaloids, saponins, and anthraquinones. The methanolic and dichloromethane extracts of selected plants were subjected to examination of antifungal activity by using agar tube dilution. The extracts were tested against different fungi such as A. nigeir, A. flavus, F. solani, A. funigatis and Mucor. The dichloromethane extract of aerial parts of Cd showed high antifungal activity against A. niger as compared to all other tested extracts.

  19. Overexpression of UDP-glucose pyrophosphorylase gene could increase cellulose content in Jute (Corchorus capsularis L.).

    Science.gov (United States)

    Zhang, Gaoyang; Qi, Jianmin; Xu, Jiantang; Niu, Xiaoping; Zhang, Yujia; Tao, Aifen; Zhang, Liwu; Fang, Pingping; Lin, Lihui

    2013-12-13

    In this study, the full-length cDNA of the UDP-glucose pyrophosphorylase gene was isolated from jute by homologous cloning (primers were designed according to the sequence of UGPase gene of other plants) and modified RACE techniques; the cloned gene was designated CcUGPase. Using bioinformatic analysis, the gene was identified as a member of the UGPase gene family. Real-time PCR analysis revealed differential spatial and temporal expression of the CcUGPase gene, with the highest expression levels at 40 and 120d. PCR and Southern hybridization results indicate that the gene was integrated into the jute genome. Overexpression of CcUGPase gene in jute revealed increased height and cellulose content compared with control lines, although the lignin content remained unchanged. The results indicate that the jute UGPase gene participates in cellulose biosynthesis. These data provide an important basis for the application of the CcUGPase gene in the improvement of jute fiber quality. Copyright © 2013 Elsevier Inc. All rights reserved.

  20. Colletotrichum species associated with jute (Corchorus capsularis L.) anthracnose in southeastern China.

    Science.gov (United States)

    Niu, Xiaoping; Gao, Hong; Qi, Jianmin; Chen, Miancai; Tao, Aifen; Xu, Jiantang; Dai, Zhigang; Su, Jianguang

    2016-04-28

    Anthracnose, caused by the Colletotrichum species of fungi, is one of the most serious diseases affecting jute in China. The disease causes chlorotic regions with black brown sunken necrotic pits on the surfaces of stems. In late stages of disease, plants undergo defoliation, dieback and blight, which make anthracnose a major threat to jute fiber production and quality in China. In this study, 7 strains of Colletotrichum fungi were isolated from diseased jute stems from Zhejiang, Fujian, Guangxi, and Henan plantations in China. Multi-locus sequence (ACT, TUB2, CAL, GS, GAPDH and ITS) analysis coupled with morphological assessment revealed that C. fructicola, C. siamense and C. corchorum-capsularis sp. nov. were associated with jute anthracnose in southeastern China. C. fructicola and C. siamense were previously not associated with jute anthracnose. C. corchorum-capsularis is a new species formally described here. Pathogenicity tests confirmed that all species can infect jute, causing anthracnose, however the virulence of the 3 species differed. This report is the first associating these three species with jute disease worldwide and is the first description of the pathogens responsible for jute anthracnose in China.

  1. Effect of Sida acuta and Corchorus olitorius mucilages on the physicochemical properties of maize and sorghum starches

    Directory of Open Access Journals (Sweden)

    Funmilola Yetunde Oladipo

    2011-05-01

    Full Text Available Sorry, this article has been withdrawn of Orbital journal because its content was previously published in another scientific journal! Dr. Adilson Beatriz Editor-in-Chief of the Orbital – The Electronic Journal of Chemistry

  2. Development and Characterization of 1,906 EST-SSR Markers from Unigenes in Jute (Corchorus spp.).

    Science.gov (United States)

    Zhang, Liwu; Li, Yanru; Tao, Aifen; Fang, Pingping; Qi, Jianmin

    2015-01-01

    Jute, comprising white and dark jute, is the second important natural fiber crop after cotton worldwide. However, the lack of expressed sequence tag-derived simple sequence repeat (EST-SSR) markers has resulted in a large gap in the improvement of jute. Previously, de novo 48,914 unigenes from white jute were assembled. In this study, 1,906 EST-SSRs were identified from these assembled uingenes. Among these markers, di-, tri- and tetra-nucleotide repeat types were the abundant types (12.0%, 56.9% and 21.6% respectively). The AG-rich or GA-rich nucleotide repeats were the predominant. Subsequently, a sample of 116 SSRs, located in genes encoding transcription factors and cellulose synthases, were selected to survey polymorphisms among12 diverse jute accessions. Of these, 83.6% successfully amplified at least one fragment and detected polymorphism among the 12diverse genotypes, indicating that the newly developed SSRs are of good quality. Furthermore, the genetic similarity coefficients of all the 12 accessions were evaluated using 97 polymorphic SSRs. The cluster analysis divided the jute accessions into two main groups with genetic similarity coefficient of 0.61. These EST-SSR markers not only enrich molecular markers of jute genome, but also facilitate genetic and genomic researches in jute.

  3. The CCoAOMT1 gene from jute (Corchorus capsularis L.) is involved in lignin biosynthesis in Arabidopsis thaliana.

    Science.gov (United States)

    Zhang, Gaoyang; Zhang, Yujia; Xu, Jiantang; Niu, Xiaoping; Qi, Jianmin; Tao, Aifen; Zhang, Liwu; Fang, Pingping; Lin, LiHui; Su, Jianguang

    2014-08-10

    The Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) is a key enzyme in lignin biosynthesis in plants. In this study we cloned the full-length cDNA of the Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) gene from jute using homology clone (primers were designed according to the sequence of CCoAOMT gene of other plants), and a modified RACE technique, subsequently named "CcCCoAOMT1". Bioinformatic analyses showed that the gene is a member of the CCoAOMT gene family. Real-time PCR analysis revealed that the CcCCoAOMT1 gene is constitutively expressed in all tissues, and the expression level was greatest in stem, followed by stem bark, roots and leaves. In order to understand this gene's function, we transformed it into Arabidopsis thaliana; integration (one insertion site) was confirmed following PCR and southern hybridization. The over-expression of CcCCoAOMT1 in these transgenic A.thaliana plants resulted in increased plant height and silique length relative to non-transgenic plants. Perhaps the most important finding was that the transgenic Arabidopsis plants contained more lignin (20.44-21.26%) than did control plants (17.56%), clearly suggesting an important role of CcCCoAOMT1 gene in lignin biosynthesis. These data are important for the success of efforts to reduce jute lignin content (thereby increasing fiber quality) via CcCCoAOMT1 gene inhibition. Copyright © 2014 Elsevier B.V. All rights reserved.

  4. Genetic Structure and Relationship Analysis of an Association Population in Jute (Corchorus spp. Evaluated by SSR Markers.

    Directory of Open Access Journals (Sweden)

    Liwu Zhang

    Full Text Available Population structure and relationship analysis is of great importance in the germplasm utilization and association mapping. Jute, comprised of white jute (C. capsularis L and dark jute (C. olitorius L, is second to cotton in its commercial significance in the world. Here, we assessed the genetic structure and relationship in a panel of 159 jute accessions from 11 countries and regions using 63 SSRs. The structure analysis divided the 159 jute accessions from white and dark jute into Co and Cc group, further into Co1, Co2, Cc1 and Cc2 subgroups. Out of Cc1 subgroup, 81 accessions were from China and the remaining 10 accessions were from India (2, Japan (5, Thailand, Vietnam (2 and Pakistan (1. Out of Cc2 subgroup, 35 accessions were from China, and the remaining 3 accessions were from India, Pakistan and Thailand respectively. It can be inferred that the genetic background of these jute accessions was not always correlative with their geographical regions. Similar results were found in Co1 and Co2 subgroups. Analysis of molecular variance revealed 81% molecular variation between groups but it was low (19% within subgroups, which further confirmed the genetic differentiation between the two groups. The genetic relationship analysis showed that the most diverse genotypes were Maliyeshengchangguo and Changguozhongyueyin in dark jute, BZ-2-2, Aidianyehuangma, Yangjuchiyuanguo, Zijinhuangma and Jute 179 in white jute, which could be used as the potential parents in breeding programs for jute improvement. These results would be very useful for association studies and breeding in jute.

  5. Development and Characterization of 1,906 EST-SSR Markers from Unigenes in Jute (Corchorus spp..

    Directory of Open Access Journals (Sweden)

    Liwu Zhang

    Full Text Available Jute, comprising white and dark jute, is the second important natural fiber crop after cotton worldwide. However, the lack of expressed sequence tag-derived simple sequence repeat (EST-SSR markers has resulted in a large gap in the improvement of jute. Previously, de novo 48,914 unigenes from white jute were assembled. In this study, 1,906 EST-SSRs were identified from these assembled uingenes. Among these markers, di-, tri- and tetra-nucleotide repeat types were the abundant types (12.0%, 56.9% and 21.6% respectively. The AG-rich or GA-rich nucleotide repeats were the predominant. Subsequently, a sample of 116 SSRs, located in genes encoding transcription factors and cellulose synthases, were selected to survey polymorphisms among12 diverse jute accessions. Of these, 83.6% successfully amplified at least one fragment and detected polymorphism among the 12diverse genotypes, indicating that the newly developed SSRs are of good quality. Furthermore, the genetic similarity coefficients of all the 12 accessions were evaluated using 97 polymorphic SSRs. The cluster analysis divided the jute accessions into two main groups with genetic similarity coefficient of 0.61. These EST-SSR markers not only enrich molecular markers of jute genome, but also facilitate genetic and genomic researches in jute.

  6. Genetic Structure and Relationship Analysis of an Association Population in Jute (Corchorus spp.) Evaluated by SSR Markers.

    Science.gov (United States)

    Zhang, Liwu; Yuan, Minhang; Tao, Aifen; Xu, Jiantang; Lin, Lihui; Fang, Pingping; Qi, Jianmin

    2015-01-01

    Population structure and relationship analysis is of great importance in the germplasm utilization and association mapping. Jute, comprised of white jute (C. capsularis L) and dark jute (C. olitorius L), is second to cotton in its commercial significance in the world. Here, we assessed the genetic structure and relationship in a panel of 159 jute accessions from 11 countries and regions using 63 SSRs. The structure analysis divided the 159 jute accessions from white and dark jute into Co and Cc group, further into Co1, Co2, Cc1 and Cc2 subgroups. Out of Cc1 subgroup, 81 accessions were from China and the remaining 10 accessions were from India (2), Japan (5), Thailand, Vietnam (2) and Pakistan (1). Out of Cc2 subgroup, 35 accessions were from China, and the remaining 3 accessions were from India, Pakistan and Thailand respectively. It can be inferred that the genetic background of these jute accessions was not always correlative with their geographical regions. Similar results were found in Co1 and Co2 subgroups. Analysis of molecular variance revealed 81% molecular variation between groups but it was low (19%) within subgroups, which further confirmed the genetic differentiation between the two groups. The genetic relationship analysis showed that the most diverse genotypes were Maliyeshengchangguo and Changguozhongyueyin in dark jute, BZ-2-2, Aidianyehuangma, Yangjuchiyuanguo, Zijinhuangma and Jute 179 in white jute, which could be used as the potential parents in breeding programs for jute improvement. These results would be very useful for association studies and breeding in jute.

  7. A simple method of DNA isolation from jute (Corchorus olitorius) seed suitable for PCR-based detection of the pathogen Macrophomina phaseolina (Tassi) Goid.

    Science.gov (United States)

    Biswas, C; Dey, P; Satpathy, S; Sarkar, S K; Bera, A; Mahapatra, B S

    2013-02-01

    A simple method was developed for isolating DNA from jute seed, which contains high amounts of mucilage and secondary metabolites, and a PCR protocol was standardized for detecting the seedborne pathogen Macrophomina phaseolina. The cetyl trimethyl ammonium bromide method was modified with increased salt concentration and a simple sodium acetate treatment to extract genomic as well as fungal DNA directly from infected jute seed. The Miniprep was evaluated along with five other methods of DNA isolation in terms of yield and quality of DNA and number of PCR positive samples. The Miniprep consistently recovered high amounts of DNA with good spectral qualities at A260/A280. The DNA isolated from jute seed was found suitable for PCR amplification. Macrophomina phaseolina could be detected by PCR from artificially inoculated as well as naturally infected jute seeds. The limit of PCR-based detection of M. phaseolina in jute seed was determined to be 0·62 × 10(-7) CFU g(-1) seed. © 2012 The Society for Applied Microbiology.

  8. A method of multiplex PCR for detection of field released Beauveria bassiana, a fungal entomopathogen applied for pest management in jute (Corchorus olitorius).

    Science.gov (United States)

    Biswas, Chinmay; Dey, Piyali; Gotyal, B S; Satpathy, Subrata

    2015-04-01

    The fungal entomopathogen Beauveria bassiana is a promising biocontrol agent for many pests. Some B. bassiana strains have been found effective against jute pests. To monitor the survival of field released B. bassiana a rapid and efficient detection technique is essential. Conventional methods such as plating method or direct culture method which are based on cultivation on selective media followed by microscopy are time consuming and not so sensitive. PCR based methods are rapid, sensitive and reliable. A single primer PCR may fail to amplify some of the strains. However, multiplex PCR increases the possibility of detection as it uses multiple primers. Therefore, in the present investigation a multiplex PCR protocol was developed by multiplexing three primers SCA 14, SCA 15 and SCB 9 to detect field released B. bassiana strains from soil as well as foliage of jute field. Using our multiplex PCR protocol all the five B. bassiana strains could be detected from soil and three strains viz., ITCC 6063, ITCC 4563 and ITCC 4796 could be detected even from the crop foliage after 45 days of spray.

  9. De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.).

    Science.gov (United States)

    Zhang, Liwu; Ming, Ray; Zhang, Jisen; Tao, Aifen; Fang, Pingping; Qi, Jianmin

    2015-12-15

    Jute fiber, extracted from stem bast, is called golden fiber. It is essential for fiber improvement to discover the genes associated with jute development at the vegetative growth stage. However, only 858 EST sequences of jute were deposited in the GenBank database. Obviously, the public available data is far from sufficient to understand the molecular mechanism of the fiber biosynthesis. It is imperative to conduct transcriptomic sequence for jute, which can be used for the discovery of a number of new genes, especially genes involved in cellulose biosynthesis. A total of 79,754,600 clean reads (7.98 Gb) were generated using Illumina paired-end sequencing. De novo assembly yielded 48,914 unigenes with an average length of 903 bp. By sequence similarity searching for known proteins, 27,962 (57.16 %) unigenes were annotated for their function. Out of these annotated unigenes, 21,856 and 11,190 unigenes were assigned to gene ontology (GO) and euKaryotic Ortholog Groups (KOG), respectively. Searching against the Kyoto Encyclopedia of Genes and Genomes Pathway database (KEGG) indicated that 14,216 unigenes were mapped to 268 KEGG pathways. Moreover, 5 Susy, 3 UGPase, 9 CesA, 18 CSL, 2 Kor (Korrigan), and 12 Cobra unigenes involving in cellulose biosynthesis were identified. Among these unigenes, the unigenes of comp11264_c0 (SuSy), comp24568_c0 (UGPase), comp11363_c0 (CesA), comp11363_c1 (CesA), comp24217_c0 (CesA), and comp23531_c0 (CesA), displayed relatively high expression level in stem bast using FPKM and RT-qPCR, indicating that they may have potential value of dissecting mechanism on cellulose biosynthesis in jute. In addition, a total of 12,518 putative gene-associate SNPs were called from these assembled uingenes. We characterized the transcriptome of jute, discovered a broad survey of unigenes associated with vegetative growth and development, developed large-scale SNPs, and analyzed the expression patterns of genes involved in cellulose biosynthesis for bast fiber. All these provides a valuable genomics resource, which will accelerate the understanding of the mechanism of fiber development in jute.

  10. Bioaccumulation and associated dietary risks of Pb, Cd, and Zn in amaranth (Amaranthus cruentus) and jute mallow (Corchorus olitorius) grown on soil irrigated using polluted water from Asa River, Nigeria.

    Science.gov (United States)

    Ogunkunle, Clement Oluseye; Ziyath, Abdul M; Adewumi, Faderera Esther; Fatoba, Paul Ojo

    2015-05-01

    Dietary uptake of heavy metals through the consumption of vegetables grown on polluted soil can have serious human health implications. Thus, the study presented in this paper investigated the bioaccumulation and associated dietary risks of Pb, Zn, and Cd present in vegetables widely consumed in Nigeria, namely amaranth and jute mallow, grown on soil irrigated with polluted water from Asa River. The study found that the soil was polluted with Zn, Pb, and Cd with Pb and Cd being contributed by polluted river, while Zn was from geogenic sources. The metal concentration in amaranth and jute mallow varied in the order of Zn > Pb > Cd and Zn > Pb ≈ Cd, respectively. Jute mallow acts as an excluder plant for Pb, Cd, and Zn. Consequently, the metal concentrations in jute mallow were below the toxic threshold levels. Furthermore, non-cancer human health risk of consuming jute mallow from the study site was not significant. In contrast, the concentrations of Pb and Cd in amaranth were found to be above the recommended safe levels and to be posing human health risks. Therefore, further investigation was undertaken to identify the pathways of heavy metals to amaranth. The study found that the primary uptake pathway of Pb and Cd by amaranth is foliar route, while root uptake is the predominant pathway of Zn in amaranth.

  11. Fungi of Delhi. XXXIV. Zygorhynchus japonicus, a new record from India and its hyperparasite

    Directory of Open Access Journals (Sweden)

    Rani Grupta

    2014-08-01

    Full Text Available Zygorhynchus japonicus was isolated from decaing leaves of Corchorus olitorius. This is a new record from India and a second report after its isolation. Aspergillus flavus was observed to parasitize it quite frequently and distinctly.

  12. Identification of Two Cellulose-decomposing Strains Actinomycetes%2株降解纤维素放线菌的鉴定

    Institute of Scientific and Technical Information of China (English)

    吴翔; 甘炳成; 黄忠乾; 彭卫红; 唐杰; 谢丽源; 周洁

    2014-01-01

    为了确定两株分离自土壤的降解纤维素放线菌F5-12和F3-2的分类地位,通过对两株菌进行形态特征、生理生化特征测定以及16S rDNA序列分析的鉴定方法,确定F5-12为黄麻链霉菌(Streptomyces corchorus),将其命名为(Streptomyces corchorus)F5-12.确定F3-2为白酒红链霉菌(Streptomyces corchorus),将其命名为(Streptomyces corchorus)F3-2.

  13. 2198-IJBCS-Article -Victor barku

    African Journals Online (AJOL)

    hp

    Anti-nociceptive and antioxidant activities of an aqueous leaf extract of. Corchorus olitorius L. ... al., 2001) and thus a valid model ... in pre-clinical screening of analgesics (Vissers et al., 2003). ..... in vitro and in vivo experiments. Similarly,.

  14. Mallow carotenoids determined by high-performance liquid chromatography

    Science.gov (United States)

    Mallow (corchorus olitorius) is a green vegetable, which is widely consumed either fresh or dry by Middle East population. This study was carried out to determine the contents of major carotenoids quantitatively in mallow, by using a High Performance Liquid Chromatography (HPLC) equipped with a Bis...

  15. Mechanical properties and surface chemistry of kenaf fiber for composite reinforcement – an insight into the retting process

    Science.gov (United States)

    Harnessing natural fibers to produce polymer composites requires processing of fibers from harvest to the dried state, which can then be dispersed in the polymer resin. Bast fibers are found in the bark layer of fibrous plants such as kenaf (Hibiscus cannabinus), jute (Corchorus olitorius), and flax...

  16. Draft Genome Sequence of Grammothele lineata SDL-CO-2015-1, a Jute Endophyte with a Potential for Paclitaxel Biosynthesis.

    Science.gov (United States)

    Das, Avizit; Ahmed, Oly; Baten, A K M Abdul; Bushra, Samira; Islam, M Tariqul; Ferdous, Ahlan Sabah; Islam, Mohammad Riazul; Khan, Haseena

    2017-08-17

    Grammothele lineata strain SDL-CO-2015-1, a basidiomycete fungus, was identified as an endophyte from a jute species, Corchorus olitorius var. 2015, and found to produce paclitaxel, a diterpenic polyoxygenated pseudoalkaloid with antitumor activity. Here, we report the draft genome sequence (42.8 Mb with 9,395 genes) of this strain. Copyright © 2017 Das et al.

  17. Comparative genomics of two jute species and insight into fibre biogenesis.

    Science.gov (United States)

    Islam, Md Shahidul; Saito, Jennifer A; Emdad, Emdadul Mannan; Ahmed, Borhan; Islam, Mohammad Moinul; Halim, Abdul; Hossen, Quazi Md Mosaddeque; Hossain, Md Zakir; Ahmed, Rasel; Hossain, Md Sabbir; Kabir, Shah Md Tamim; Khan, Md Sarwar Alam; Khan, Md Mursalin; Hasan, Rajnee; Aktar, Nasima; Honi, Ummay; Islam, Rahin; Rashid, Md Mamunur; Wan, Xuehua; Hou, Shaobin; Haque, Taslima; Azam, Muhammad Shafiul; Moosa, Mahdi Muhammad; Elias, Sabrina M; Hasan, A M Mahedi; Mahmood, Niaz; Shafiuddin, Md; Shahid, Saima; Shommu, Nusrat Sharmeen; Jahan, Sharmin; Roy, Saroj; Chowdhury, Amlan; Akhand, Ashikul Islam; Nisho, Golam Morshad; Uddin, Khaled Salah; Rabeya, Taposhi; Hoque, S M Ekramul; Snigdha, Afsana Rahman; Mortoza, Sarowar; Matin, Syed Abdul; Islam, Md Kamrul; Lashkar, M Z H; Zaman, Mahboob; Yuryev, Anton; Uddin, Md Kamal; Rahman, Md Sharifur; Haque, Md Samiul; Alam, Md Monjurul; Khan, Haseena; Alam, Maqsudul

    2017-01-30

    Jute (Corchorus sp.) is one of the most important sources of natural fibre, covering ∼80% of global bast fibre production(1). Only Corchorus olitorius and Corchorus capsularis are commercially cultivated, though there are more than 100 Corchorus species(2) in the Malvaceae family. Here we describe high-quality draft genomes of these two species and their comparisons at the functional genomics level to support tailor-designed breeding. The assemblies cover 91.6% and 82.2% of the estimated genome sizes for C. olitorius and C. capsularis, respectively. In total, 37,031 C. olitorius and 30,096 C. capsularis genes are identified, and most of the genes are validated by cDNA and RNA-seq data. Analyses of clustered gene families and gene collinearity show that jute underwent shared whole-genome duplication ∼18.66 million years (Myr) ago prior to speciation. RNA expression analysis from isolated fibre cells reveals the key regulatory and structural genes involved in fibre formation. This work expands our understanding of the molecular basis of fibre formation laying the foundation for the genetic improvement of jute.

  18. Fungi of Delhi XXXIII. Chaetomium putrefactus sp.n.

    Directory of Open Access Journals (Sweden)

    Rani Grupta

    2014-08-01

    Full Text Available Chaetomium putrefactus has been described as a new species. It has smaller and sparser hairs and ellipto-fusoid ascospores. We have isolated and described several species of Chaetomium from living and dead leaves of various plants. One species isolated from decaying leaves of Corchorus olitorius appeared to be interesting and new. It is characterized by smaller and fewer hairs and ellipso-fusoid ascospores.

  19. Comparative value of wild and domestic plants in home gardens of a South African rural village

    CSIR Research Space (South Africa)

    High, C

    2000-03-01

    Full Text Available and used morogos in home gardens in Dingleydale B were nkus Corchorus tridens), thepe (Amaranthus hybridus), nkaka (Momordica balsamina), and lerote (Cleome gynandra), along with pumpkin leaves and mositsa (Bidens bipinnata and B. pilosa) (Table 3). Mositsa... (based on group meetings). The two species available most of the year, nkaka (Momordica balsamina) and mositsa (Bidens spp.), are not generally favoured. Some people don?t like their taste, and several people stated that mositsa caused bad body odour...

  20. Xyloglucan endotransglycosylase/hydrolase genes from a susceptible and resistant jute species show opposite expression pattern following Macrophomina phaseolina infection.

    Science.gov (United States)

    Sharmin, Sazia; Azam, Muhammad Shafiul; Islam, Md Shahidul; Sajib, Abu Ashfaqur; Mahmood, Niaz; Hasan, A M Mahedi; Ahmed, Razib; Sultana, Kishwar; Khan, Haseena

    2012-11-01

    Two of the most widely and intensively cultivated jute species, Corchorus capsularis and Corchorus olitorius, suffer severely from a stem rot disease caused by the fungus Macrophomina phaseolina. Wild jute species, C. trilocularis, shows resistance to this pathogenic fungus. In this study, the technique of differential display was applied to identify genes which are differentially expressed, under both infected and un-infected conditions, between C. trilocularis and C. olitorius var O-72. Two xyloglucan endotransglycosylase/hydrolase (XTH) genes designated CoXTH1 (from Corchorus olitorius) and CtXTH1 (from C.trilocularis) were identified from each of the two species which show different expression patterns upon fungal infection. A steady rise in the expression of CtXTH1 in response to infection was observed by quantitative real time PCR whereas the expression of CoXTH1 was found to be downregulated. Full length sequences of these two genes were determined using primer based gene walking and RACE PCR. This study confirms the involvement of XTH in molecular interactions between M. phaseolina and jute. However, it remains to be explored whether XTH is an essential component of the signaling pathway involved in plant-fungal interaction.

  1. Comparative study of trace element levels in some local vegetable varieties and irrigation waters from different locations in Ilorin, Nigeria

    Directory of Open Access Journals (Sweden)

    O.O. Dosumu

    2003-06-01

    Full Text Available The level of heavy metals in two varieties of vegetables harvested during the dry and wet seasons from seven different locations in Ilorin, Nigeria, were determined. The correlation between the level of metals in the vegetables and the irrigation water was also studied. Vegetables harvested during the dry season were found to contain higher level of toxic metals. Low water quality, accumulation of particulate after rainless period and nearness of some vegetable gardens to major and well travelled roads appeared to be the major contributory factors. Amaranthus hybridus seemed to have higher metal accumulation capacity compared to Corchorus olitorius mannii.

  2. Plant Community and Soil Relationships in the Vicinity of International Leather Industry and Farooq Textile Mill of Landhi Industrial Area in Karachi, Pakistan

    Directory of Open Access Journals (Sweden)

    *S. Atiq-ur-Rahman

    2011-03-01

    Full Text Available Phytosociological studies were carried around the International Leather industry and Farooq Textile Mill in the vicinity of Landhi industrial estate of Karachi and compared with control area of University Campus to evaluate plant community-soil relationship in the localities. The vegetation was herbaceous, shrubs and predominantly disturbed in nature at all of the sites. Based on the composition, structure and distribution of species, plant communities of each area were recognized. Both plant communities of International Leather industry and Farooq Textile Mill had low number of plant species as related to control area. Importance value index of all the species were determined. Senna holosericea (Fresen. Greuter, Corchorus depressus (L. Stocks and Amaranthus viridis L. were found in all the communities whereas, Corchorus trilocularis L. and Abutilon indicum (L. Sweet were present in industrial areas. A relationship between soil characteristics and plant communities of the industries of Landhi and control site were conducted. Industrial plant communities have low level of water holding capacity and organic matter and high concentrations of total soluble salts and available sulfate as relative to soil of plant community of control area. The research demonstrated that the plant species were retarded in numbers due to soil pollution as compared to control area of Karachi University Campus due to industrial existing contamination and pollution in soil in the area

  3. Relative Efficacy of On-Farm Weeds as Soil-Amendement for Managing Dry Root Rot of Clusterbean in an Arid Environment

    Directory of Open Access Journals (Sweden)

    R. Mawar

    2006-12-01

    Full Text Available The effectiveness of certain on-farm weeds as soil amendments was ascertained against Macrophomina phaseolina, a soil-borne pathogen causing dry root rot of crops grown under rainfed conditions in arid regions. Population changes in M. phaseolina were determined in soils amended separately with residues (1%, w:w of Aerva persica, Celosia argentea, Corchorus depressus, Euphorbia hirta, Heliotropium subulatum and Polycarpaea corymbosa, for a period of 90 days. Significant reductions by 90.4–100% in the population of M. phaseolina were achieved with all the weed residues except P. corymbosa. Celosia and Euphorbia residues completely eradicated viable propagules of M. phaseolina. A strong increase (44–61% in the population of antagonistic actinomycetes was also found in soil amended with Corchorus and Euphorbia. In field tests, soil amended (50 g m2 with Euphorbia, Aerva and Celosia residues significantly reduced dry root rot incidence on clusterbean and also reduced M. phaseolina propagules in the soil. However, dry root rot incidence in Polycarpaea-amended soil (5.8–24.6% was not significantly different from that in non-amended soil (4.3–25.3% in both years of the experiment. P. corymbosa also increased the number of propagules of M. phaseolina in the soil. The results demonstrate that dry root rot of rainfed-cultivated annual crops in arid land can be managed with certain weeds as a soil amendment.

  4. Late Jute seed production in cropland agroforestry system

    Directory of Open Access Journals (Sweden)

    Kazi Noor-E-Alam Jewel

    2015-12-01

    Full Text Available Farmers were not self-sufficient in jute seed production and cultivation to avoid use exotic jute seed from different resources. Though the conventional method of jute seed production was not enough to meet the demand of farmers because of shrinkage of jute seed production land. So, late jute seed production technique was applied in agroforestry systems at both established and newly developed orchards. The study was conducted in the selected three sites of Rangpur, Dinajpur and Faridpur. Both White (Corchorus capsularis L.cv. CVL-1 and Tossa (two popular cultivars, eg., Corchorus olitorius L. cv. O-9897, and cv. O-72 varieties were used for to evaluate the late jute seed production in cropland agroforestry in 2011- 2013. It was observed that 600 kg ha-1 to 725 kg ha-1 of jute seed was produced in different types of orchard plantation. Seeds from Litchi orchard showed the higher fiber yield (1051.11, 2511.11 and 3555.56 kg ha-1 at Rangpur, Dinajpur and Faridpur, respectively than the mango orchard. Nutrient contents of soil in three sits were improved significantly due to the cultivation of late jute seed production. Moreover, late jute seed production in early stages of orchard plantation was more profitable and late jute can be produced economically for five to seven years depending on the plantations type and age.

  5. Origin and Evolution of Jute Analysed by SRAP and ISSR Methods%SRAP结合ISSR方法分析黄麻属的起源与演化

    Institute of Scientific and Technical Information of China (English)

    陶爱芬; 祁建民; 李木兰; 方平平; 林荔辉; 徐建堂

    2012-01-01

    [Objective] The objective of this study is to make clear the origin and evolution of Corchorus with two molecular methods (SRAP and ISSR). [Method] Ninety-six jute germplasms were analysed with sequence related amplified polymorphism (SRAP) combining with inter-simple sequence related (ISSR) method. The phylogenetic trees of Corchorus were constructed by MEGA and DPS software, and the divergence time of jute germplasm was calculated. [Result] The relative wild species located at the basic position of the dendrogram, and the divergence time of which was the longest, which indicated the relative wild species originated earliest and was the ancestors of cultivated jute. Africa was the center of origin of Corchorus, while China was the second original center of Corchorus. Among all the olitorius species, the divergence time of wild and cultivated species from Africa was the longest, so Africa was the center of origin for wild and cultivated olitorius species, while the areas which border on India, Burma and China was the second center of origin for cultivated olitorius species. South China, countries of South Asia and Southeast Asia which border on China were the origin center of wild capsularis species, and South region of China was the origin center of cultivated capsularis species. Taken together, the divergence time of the cultivated capsularis species was shorter than olitorius species, indicating this biotype originated later than olitorius species. [ Conclusion ] Africa has an important position in origin of Corchorus, which was the primary origin center of wild species, wild and cultivated olitorius species. South region of China was the origin center of cultivated capsularis species. The divergence time and phylogenetic trees of Corchorus were calculated more comprehensively by SRAP markers combining with ISSR molecular markers, and the scientific conclusion on origin and evolution of Corchorus was got with above methods.%[目的]以SRAP结合ISSR分子标记

  6. Antipyretic studies on some indigenous Pakistani medicinal plants: II.

    Science.gov (United States)

    Ikram, M; Khattak, S G; Gilani, S N

    1987-01-01

    Eight Pakistani medicinal plants were investigated for antipyretic activity in rabbits receiving subcutaneous yeast injections. Hexane- and chloroform-soluble extracts of Aconitum napellus stems, Corchorus depressus whole plant and Gmelina asiatica roots exhibited prominent oral antipyretic activity while insignificant antipyretic effects were found in the hexane- and chloroform-soluble portions of Melia azadirachta seeds, Tinospora cordifolia stems and Vitex trifolia seeds. No antipyretic actions whatsoever were produced by extracts of A. heterophyllum roots and Hedysarum alhagi aerial parts. Toxicity studies revealed no noteworthy toxic or adverse effects for any of the above plant extracts up to the highest oral doses of 1.6 g/kg except in the case of A. napellus.

  7. Modification of Jute Fibers with Polystyrene via Atom Transfer Radical Polymerization

    DEFF Research Database (Denmark)

    Plackett, David; Jankova, Katja Atanassova; Egsgaard, Helge

    2005-01-01

    Atom transfer radical polymerization (ATRP) was investigated as a method of covalently bonding polystyrene to jute (Corchorus capsularis) and as a possible approach to fiber composites with enhanced properties. Jute fibers were modified with a brominated initiator and subsequently ATRP modified...... to attach polystyrene and then examined using SEM, DSC, TGA, FTIR, XPS, elemental analysis, and Py-GC-MS. These techniques confirmed that polystyrene had been covalently bound to the fibers and consequently ATRP-modified jute fiber mats were used to prepare hot-pressed polystyrene composites. Composite...... applications, we conclude that further optimization of the ATRP method is required, possibly targeting higher and more uniform loading of polystyrene on the fibers....

  8. Pathogenicity of Macrophomina phaseoli on Jute in the Presence of Meloidogyne incognita and Hoplolaimus indicus.

    Science.gov (United States)

    Haque, M D; Mukhopadhyaya, M C

    1979-10-01

    Seedlings of Corchorus capsularis (cv. C4444) were inoculated with Meloidogyne incognita, Hoplolaimus indicus, and a fungus pathogen of jute, Macrophomina phaseoli, separately and in all possible combinations. The significant damage of jute plants caused individually by the pathogens was aggravated when the fungus was associated with either of the nematode species. M. incognita alone caused greater damage than either H. indicus or Macrophomina phaseoli alone. Plants inoculated with M. incognita and Macrophomina phaseoli were more severely damaged than plants inoculated with H. indicus and the fungus. Plant growth was minimum and disease symptoms were maximum when all pathogens acted together. In the presence of the fungus, M. incognita produced fewer galls. The reproduction of H. indicus was not influenced by the other organisms.

  9. Modification of jute fibers with polystyrene via atom transfer radical polymerization.

    Science.gov (United States)

    Plackett, David; Jankova, Katja; Egsgaard, Helge; Hvilsted, Søren

    2005-01-01

    Atom transfer radical polymerization (ATRP) was investigated as a method of covalently bonding polystyrene to jute (Corchorus capsularis) and as a possible approach to fiber composites with enhanced properties. Jute fibers were modified with a brominated initiator and subsequently ATRP modified to attach polystyrene and then examined using SEM, DSC, TGA, FTIR, XPS, elemental analysis, and Py-GC-MS. These techniques confirmed that polystyrene had been covalently bound to the fibers and consequently ATRP-modified jute fiber mats were used to prepare hot-pressed polystyrene composites. Composite specimens were tensile tested and fracture surfaces examined using SEM. Although SEM examination suggested different fracture modes between unmodified fiber and ATRP-modified samples, the tensile strength of modified samples was slightly lower on average than that of unmodified samples. For fiber composite applications, we conclude that further optimization of the ATRP method is required, possibly targeting higher and more uniform loading of polystyrene on the fibers.

  10. Metal Contamination In Plants Due To Tannery Effluent

    Directory of Open Access Journals (Sweden)

    Md. Farhad Ali

    2015-08-01

    Full Text Available Abstract This paper analyzes the determination of heavy metals named Chromium Lead and Cadmium deposited in soil as well as in the plants and vegetables due to the tanning industries of the area of Hazaribagh Dhaka. The tanneries discharge untreated tannery effluents which get mixed with the soil water of rivers and canals in this area. The determination of metals was performed for the soil that was collected from the land adjacent to the canals which bear untreated tannery effluents. The soil is affected with the untreated effluents through the deposition of heavy metals. The metals were furthers deposited into the plants and vegetables grown on that soil. The roots stems and leaves of the plants of Jute Corchorus capsularis and Spinach Basella alba grown on that soil were analyzed for determining these metals. Extreme amount of chromium was found for plants and again Lead Cadmium were found in higher amount in these parts of the two plants. These two plants are taken as a popular vegetables extensively. In case of soil the amount of Chromium Lead and Cadmium were analyzed as 87 mgL 0.131 mgL and 0.190 mgL respectively. For the roots stems and leaves of Jute Corchorus capsularis the average values are 115.62 mgL for Chromium 11.25 mgL for Lead and 2.27 mgL for Cadmium respectively. Again in case of Spinach Basella alba 124.42 mgL was found for Chromium 7.38 mgL for lead and 2.97 mgL for Cadmium as average values for these parts of the two trees. All the observed values of metals of Chromium Lead and Cadmium are higher than the permissible and specially for Chromium the amount is extremely higher.

  11. Weed Biomass and Weed Species Diversity of Juvenile Citrus Trees Intercrop with some Arable Crops

    Directory of Open Access Journals (Sweden)

    Patience Mojibade OLORUNMAIYE

    2012-02-01

    Full Text Available A preliminary study was carried out to evaluate the performances of eight crops in the intercrop of citrus with arable crops at the National Horticultural Research Institute (NIHORT Ibadan, Nigeria. Eight arable crops: maize, cucumber, sweet potato, Corchorus olitorius, large green, grain amaranth, Mucuna pruriens var. utilis, and groundnut were intercropped with young citrus trees in the early planting season of 2010 with sole citrus as control. The experiment was laid out in a completely randomized block design with three replicates. Data were collected on weed flora, weed density and weed dry weight. Results showed that the relative frequencies of weeds in all the plots were less than 4% at both 6 and 9WAP. Gomphrena celosoides, Oldenlandia corymbosa and Tridax procumbens were most preponderant in appearing in all the plots. Tridax procumbens had a consistent relative frequency (2.34% in all the plots except in citrus/maize plot (0.78% at 9 WAP. Significantly lower broadleaf weed densities were obtained in citrus/sweet potato, citrus/large green, control plot and citrus/cucumber (28.67, 45.00, 50.00 and 76.33 m-2 respectively than in citrus/groundnut plot (143.00 m-2. Similarly, significantly lower grass weed densities were produced in citrus/Mucuna and citrus/sweet potato (0.33 m-2 each plots than the control plot (11.33 m-2. Whereas citrus/corchorus plot produced significantly lower broadleaf weed dry weight (37.59 g m-2 than citrus/Mucuna plot (126.47 g m-2 at 3WAP, citrus/large green plot (16.15 g m-2 and citrus/groundnut plot (123.25 g m-2 followed the same trend at 6 WAP. Sedges dry weights were less than 7 g m-2 in all the plots compared with control plot.

  12. Weed Biomass and Weed Species Diversity of Juvenile Citrus Trees Intercrop with some Arable Crops

    Directory of Open Access Journals (Sweden)

    Patience Mojibade OLORUNMAIYE

    2012-02-01

    Full Text Available A preliminary study was carried out to evaluate the performances of eight crops in the intercrop of citrus with arable crops at the National Horticultural Research Institute (NIHORT Ibadan, Nigeria. Eight arable crops: maize, cucumber, sweet potato, Corchorus olitorius, large green, grain amaranth, Mucuna pruriens var. utilis, and groundnut were intercropped with young citrus trees in the early planting season of 2010 with sole citrus as control. The experiment was laid out in a completely randomized block design with three replicates. Data were collected on weed flora, weed density and weed dry weight. Results showed that the relative frequencies of weeds in all the plots were less than 4% at both 6 and 9WAP. Gomphrena celosoides, Oldenlandia corymbosa and Tridax procumbens were most preponderant in appearing in all the plots. Tridax procumbens had a consistent relative frequency (2.34% in all the plots except in citrus/maize plot (0.78% at 9 WAP. Significantly lower broadleaf weed densities were obtained in citrus/sweet potato, citrus/large green, control plot and citrus/cucumber (28.67, 45.00, 50.00 and 76.33 m-2 respectively than in citrus/groundnut plot (143.00 m-2. Similarly, significantly lower grass weed densities were produced in citrus/Mucuna and citrus/sweet potato (0.33 m-2 each plots than the control plot (11.33 m-2. Whereas citrus/corchorus plot produced significantly lower broadleaf weed dry weight (37.59 g m-2 than citrus/Mucuna plot (126.47 g m-2 at 3WAP, citrus/large green plot (16.15 g m-2 and citrus/groundnut plot (123.25 g m-2 followed the same trend at 6 WAP. Sedges dry weights were less than 7 g m-2 in all the plots compared with control plot.

  13. Effect of Storage and Cooking Time on the Antioxidant Properties of Two Commonly Used Ghanaian Vegetables

    Directory of Open Access Journals (Sweden)

    A.K. Anderson

    2012-04-01

    Full Text Available Green leafy vegetables are good sources of antioxidants. This study was designed to evaluate the effect of storage and cooking time on the antioxidant properties of two commonly used Ghanaian vegetables: Corchorus olitorius and Solanum macrocarpon locally known as “adeimey” and “gboma” respectively. The storage conditions were: Left to stand overnight at room temperature, refrigerated for one day and refrigerated for one week, and cooked for ten and thirty minutes at 100ºC. The reducing power and the total carotenoid content were determined by measuring absorbance using a Shimadzu UV-120-02 spectrophotometer at 700 nm and 450 nm respectively. The free radical scavenging activity was determined by the 1, 1-diphenyl-2-picrylhydrazil (DPPH method. The antioxidant activity (AOA ranged from 91.59 to 38.42%. The total carotenoid content (TCC varied from 5.10 to 27.30 mg/100 g. The reducing power ranged from 9.52 to 50.59%. The results show that Solanum macrocarpon and Corchorus olitorius are good sources of antioxidants with the later exhibiting higher antioxidant properties than the former. However the AOA, TCC and reducing power decreased drastically when the vegetables were refrigerated for one day and one week and cooked for thirty minutes at 100ºC. Similarly the AOA, TCC and reducing power decreased slightly when the stored vegetables were cooked for ten minutes. These findings suggest modification in the storage and cooking practices of these green leafy vegetables to ensure retention of antioxidants for the best nutritional value and health benefit. The results also indicate that in areas where refrigeration is not possible, vegetables can be left overnight at room temperature to preserve the antioxidants in them.

  14. Traditional leafy vegetables in Senegal: diversity and medicinal uses.

    Science.gov (United States)

    Mathieu, Gueye; Meissa, Diouf

    2007-06-10

    Six administrative regions of Senegal were investigated. Forty species of vegetable leaves which are traditionally consumed in Senegal have been inventoried. All species are members of twenty-one families the most numerous of which are Amaranthaceae Juss., Malvaceae Juss., Moraceae Link., the Papilionaceae Giseke and Tiliaceae Juss. The species are subdivided into three groups: cultivated leafy vegetables, plants gathered annually, perennial sub-ligneous and ligneous species. The gathered species represent 67.5% of the inventory, 40.7% of which is ligneous. Cultivated species account for 32.5% of the inventory. The species are consumed for their medicinal properties, nutritive value and eating habits linked to specific ethnic traditions. During the drought years, with the scarcity of main food (millet, mays) consumption of leafy vegetables is high. All species reported except Sesuvium portulacastrum L. are consumed like vegetable herbs. The species of Hibiscus are eaten in spinach and condiment form while Sesuvium portulacastrum L is cooked in salad. Of the forty species examined, eleven are widely consumed. Within the entire study area, Hibiscus sabdariffa predominates among species consumed, followed by Moringa oleifera Lam. and Senna obtusifolia Link. A high consumption level of some species like amarante, Corchorus tridens L., Corchorus aestuans L., Leptadenia hastata Decne. and Vigna unguiculata (L.) Walp is confined to certain areas. In addition to their consumption as vegetables, the medicinal uses of 57.5% of these is of primary importance. The most commonly exploited parts are, respectively, leaf (40%), roots (20%), and bark (13.3%). Among the numerous pathologies treated, abscess, constipation, and rheumatism are predominant followed by aphrodisiac uses. The Amaranthus spp. L., Leptadenia hastata Decne., Senna obtusifolia Link., Adansonia digitata L. and Tamarindus indica L. are species with multiple medicinal uses.

  15. NEMATICIDAL ACTIVITY OF ALSTONIA BOONEI AND BRIDELIA FERRUGINEA LEAVES

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    Olatunji, Gabriel Ademola

    2012-05-01

    Full Text Available Chemical environmental hazards warrant researches on green chemistry. Screen house and field studies were conducted to investigate the natural nematicidal potential of Alstonia boonei and Bridelia ferruginea leaves. The leaves were extracted successively using n- hexane, ethyl acetate and ethanol; the crude extracts were tested on Meloidogyne incognita that infects Corchorus olitorius in a 9 x 4 x 3 factorial experiment. In the Screen house and field, Alstonia boonei ethanol extracts (ALSB/EtOH caused a significant (p<0.05 increase in plant height and number of leaves which compared significantly with that of reference standard carbofuran, whereas Alstonia boonei ethyl acetate extract (ALSB/EtOAc and Bridelia ferruginea ethyl acetate extract (BRDF/EtOAc influenced the production of higher number of branches which was similar to that of carbofuran. Nematodes were significantly (p<0.05 absent in the soil and root of plants that received the highest concentrations (75% and 50% of ALSB/EtOH, ALSB/EtOAc and Bridelia ferruginea ethanol extracts. Corchorus olitorius plants that received carbofuran and ALSB/EtOH flowered significantly earlier than plants treated with aqueous extracts of Alstonia boonei and Bridelia ferruginea, which also produced significantly (p<0.05 lower plant height, fewer leaves, fewer branches and had nematodes in their root and soil at harvest. Phytochemical screening of plant extracts revealed the presence of alkaloids, flavonoids, anthraquinones, tannins and saponins. The extracts of the leaves of A. boonei and B. ferruginea were nematicidal and appear to hold promise as natural, biodegradable and environmentally friendly alternative crop protectants against Meloidogyne incognita.

  16. Heavy metals in five leafy vegetables from urban and periurban sites in Ngaoundere, Cameroon

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    R. Adjia1

    2010-01-01

    Full Text Available Heavy metal concentrations were estimated in five leafy vegetables (Solanum nigrum, Brassica oleraceae, Lactuca sativa, Amaranthus hybridus and Corchorus olitorius from urban and periurban sites in Ngaoundere (Cameroon using an Atomic Absorption Spectrophotometer (AAS. Vegetable samples were collected at the two stages of maturity: stage I (60 days and stage II (90 days for analysis. The results showed that the concentrations of heavy metals in all vegetables were greater in urban site than in periurban site. The highest concentrations of Fe (673.92 mg/kg DW, Cu (10.42 mg/kg, Cd (1.70 mg/kg DW, and Pb (31.75 mg/kg DW were recorded in Lactuca sativa, Zn (94.60 mg/kg DW in Solanum nigrum, and Ni (16.91 mg/kg DW in Corchorus olitorius. The concentrations of Cu, and Pb were greater in roots than in aerial parts, while Fe, Cd, Ni and Zn concentrations were greater in aerial parts than in roots. Some of the concentrations of Ni, Zn and Pb in crops reached the critical level for plant growth. In general, the results indicated that the consumption of leafy vegetables harvested at the stage II potentially provides the greatest amount of heavy metals. The transportation index (Ti decreased in vegetables harvested at the stage II for Fe, Cu, Cd and Zn but slightly increased for Ni and Pb, suggesting that heavy metal transportation from roots to aerial parts depends on the plant phenology and metal species. In all farms and at the two stages of maturity, the lead concentrations in all vegetables were more than the FAO/WHO maximum recommended level in leafy vegetable for human consumption. Moreover, all vegetables had some Cd concentrations that were higher than limits set by FAO/WHO. So, they are not suitable for human consumption.

  17. Caracterização tecnológica de espécies liberianas para o estabelecimento de métodos de análise quantitativa de fibras Technological characterization of some bast plants for the establishment of a new method of fiber determination

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    Anisio Azzini

    1993-01-01

    Full Text Available Procedeu-se à caracterização tecnológica de cinco espécies não arbóreas fornecedoras de fibras liberianas, visando, principalmente, ao estabelecimento de novo método de análise quantitativa de fibras têxteis e celulósicas. Essas espécies - Crotalaria juncea, Hibiscus cannabinus, Corchorus capsularis, Urena lobatta e Boehmeria nivea - foram coletadas em 1987, de experimentos desenvolvidos no Centro Experimental de Campinas e na Estação Experimental de Pariquera-Açu do Instituto Agronômico (IAC. Os resultados mostraram variações tecnológicas significativas entre tais espécies. A crotalária, com o menor teor de líber (19,65% apresentou o maior teor de fibras celulósicas totais (54,84%, provenientes das frações liberianas e lenhosas do caule. Para as demais espécies, os teores de líber variaram de 30,74 a 41,13% e as fibras celulósicas de 39,46 a 48,38%. Os procedimentos de análise descritos representaram novo método para avaliar quantitativamente os teores de fibras têxteis e celulósicas nos caules de espécies não arbóreas.The technological characteristics of five bast plants were determined mainly to establish a new methodology for textile and cellulosic fibers determinations. The studied species (Crotalaria juncea, Hibiscus cannabinus, Corchorus capsularis, Urena lobatta and Boehmeria nivea were collected in 1987, from experiments carried out at the Experiment Center of Campinas, and Experiment Station of Pariquera-Açu, Instituto Agronômico, State of São Paulo, Brazil. The results showed technological differences among species. The Crotalaria stalks with the lowest bast contents (19.65%, presented the highest value for the total cellulosic fibers (54.84% obtained from the bast and woody fraction of the stalk. The bast content for other species varied from 30.74 to 41.13% and the total fibers from 39.46 to 48.38%. The methods of analysis utilized and described in this paper, represent a new methodology for the

  18. [The application of RAPD technology in genetic diversity detection of Jute].

    Science.gov (United States)

    Qi, Jian-Min; Zhou, Dong-Xin; Wu, Wei-Ren; Lin, Li-Hui; Fang, Ping-Ping; Wu, Jian-Mei

    2003-10-01

    The fingerprints of 10 species including 27 accessions in genus Corchorus were investigated with the technique of RAPD. Twenty-five primers were screened from 119 random primers, and a total of 329 DNA fragments were amplified ranging from 0.3-3.0 kb, 253 (87.78%), which were polymorphic. The average number of DNA band produced by each primer was 13.16. UPGMA cluster analysis and Nei's similarity coefficients were carried out and a dendrogram was constructed using software Biol D++. The results showed as follows: (1) There were abundant genetic diversities among 15 wild species and 12 cultivated species in Corchorus with genetic similarity coefficients ranging from 0.49-0.98. (2) The accessions could be clustered into three groups at cultivated species, and their close wild species were obviously different from wild species genetically. (3) At the level of D = 0.850, 27 accessions of Jute could be classified into ten groups, including C. sestuans, C. tridens, C. fascicularis, C. psendo-olitorius, C. psendo-capsularis, C. tilacutaris, Tian Jute (untitled), C. capsularis, C. olitorius and C. uriticifolius. Among which C. capsularis presented closer relationship with C. olitorius and further relationship with C. uriticifolius. The results matched well with that of the morphologic classification. (4) According to the molecular cluster tree, C. uritifolius, Chinese Tina Jute (untitled) and C. aestuans were at the basic level, revealing that these three species could be the primary wild species of Jute. (5) The tree also showed that C. tilacularis 21C from Africa could be a ecological subspecies of C. tilacularis, whilst niannian cai, ma cai and zhu cai collected different ecological types of C. aestuans, C. capsularis from Hainan was a close wild species of round fruit Jute cultivated species, and three species of C. olitorius collected from zhangpu, Henan and Mali were close wild species of long fruit Jute cultivated species. (6) within two cultivated species, the

  19. Use of weeds as traditional vegetables in Shurugwi District, Zimbabwe.

    Science.gov (United States)

    Maroyi, Alfred

    2013-08-20

    Most agricultural weeds are usually regarded as undesirable and targeted for eradication. However, weeds are useful to human beings as food and traditional medicines. Few studies have been done to document the uses of weeds as traditional vegetables. This study was therefore, done to document indigenous knowledge related to the diversity and use of agricultural weeds as traditional vegetables in Shurugwi District, Zimbabwe, emphasizing their role in food security and livelihoods of the local people. Semi-structured interviews, observation and guided field walks with 147 participants were employed between December 2011 and January 2012 to obtain ethnobotanical data on the use of edible weeds as traditional vegetables. Based on ethnobotanical information provided by the participants, botanical specimens were collected, numbered, pressed and dried for identification. A total of 21 edible weeds belonging to 11 families and 15 genera, mostly from Amaranthaceae (19%), Asteraceae and Tiliaceae (14.3%), Capparaceae, Cucurbitaceae and Solanaceae (9.5% each) were identified. Of the documented edible weeds, 52.4% are indigenous while 47.6% are exotic to Zimbabwe; either semi-cultivated or growing naturally as agricultural weeds in farmlands, fallow land and home gardens. Among the main uses of edible weeds were leafy vegetables (81%), followed by edible fruits (19%), edible corms (9.5%), edible flowers and seeds (4.8% each). The most important edible weeds were Cleome gynandra, cited by 93.9% of the participants, Cucumis metuliferus (90.5%), Cucumis anguria (87.8%), Corchorus tridens (50.3%) and Amaranthus hybridus (39.5%). All edible weeds were available during rainy and harvest period with Cleome gynandra, Corchorus tridens, Cucumis anguria, Cucumis metuliferus and Moringa oleifera also available during the dry season, enabling households to obtain food outputs in different times of the year. The importance of edible weeds for local livelihoods was ubiquitously perceived

  20. Pyrolysis kinetics study of three biomass solid wastes for thermochemical conversion into liquid fuels

    Science.gov (United States)

    Tuly, S. S.; Parveen, M.; Islam, M. R.; Rahman, M. S.; Haniu, H.

    2017-06-01

    Pyrolysis has been considered as the most efficient way of producing liquid fuel from biomass and its wastes. In this study the thermal degradation characteristics and pyrolysis kinetics of three selected biomass samples of Jute stick (Corchorus capsularis), Japanese cedar wood (Cryptomeria japonica) and Tamarind seed (Tamarindus indica) have been investigated in a nitrogen atmosphere at heating rates of 10°C/min and 60°C/min over a temperature range of 30°C to 800°C. The weight loss region for the three biomass solid wastes has shifted to a higher temperature range and the weight loss rate has increased with increasing heating rate. In this case, the three biomass samples have represented the similar behavior. The initial reaction temperature has decreased with increasing heating rate but the reaction range and reaction rate have increased. The percentage of total weight loss is higher for cedar wood than jute stick and tamarind seed. For the three biomass wastes, the overall rate equation has been modeled properly by one simplified equation and from here it is possible to determine kinetic parameters of unreacted materials based on Arrhenious form. The calculated rate equation compares thoroughly well with the measured TG and DTG data.

  1. Egyptian plant species as new ozone indicators.

    Science.gov (United States)

    Madkour, Samia A; Laurence, J A

    2002-01-01

    The aim of this study was to test and select one or more highly sensitive, specific and environmentally successful Egyptian bioindicator plants for ozone (O3). For that purpose more than 30 Egyptian species and cultivars were subjected to extensive screening studies under controlled environmental and pollutant exposure conditions to mimic the Egyptian environmental conditions and O3 levels in urban and rural sites. Four plant species were found to be more sensitive to O3 than the universally used O3-bioindicator, tobacco Bel W3, under the Egyptian environmental conditions used. These plant species, jute (Corchorus olitorius c.v. local), clover (Trifolium alexandrinum L. c.v. Masry), garden rocket (Eruca sativa c.v. local) and alfalfa (Medicago sativa L. c.v. local), ranked in order of decreasing sensitivity, exhibited typical O3 injury symptoms faster and at lower 03 concentrations than Bel W3. Three variables were tested in search of a reliable tool for the diagnosis and prediction of O3 response prior to the appearance of visible foliar symptoms: pigment degradation, stomatal conductance (g(s)) and net photosynthetic CO2 assimilation (Pnet). Pigment degradation was found to be unreliable in predicting species sensitivity to O3. Evidence supporting stomatal conductance involvement in 03 tolerance was found only in tolerant species. A good correlation was found between g(s), restriction of O3 and CO2 influx into the mesophyll tissues, and Pnet. Changes in Pnet seemed to depend largely on fluctuations in g(s).

  2. Adequacy of mineral contents of raw and plain sticky sauce of common and bush okra

    Directory of Open Access Journals (Sweden)

    Moyib Oluwasayo Kehinde

    2015-12-01

    Full Text Available In Nigeria, common okra (Abelmoschus esculentus L. and bush okra (Corchorus olitorius L. are popular mucilage vegetables used as sticky sauce for easy consumption of starchy staples.Both raw vegetables and sticky sauce of common as well as bush okra were estimated for their potential in the provision of daily dietary allowance of important minerals. Modified methods of the Association of Official Analytical Chemists (AOAC were used to estimate the assessed minerals.The results showed that the raw and sticky sauce of assessed common and bush okra contained appreciable levels and essential minerals, but are not adequate to meet recommended dietary allowance, except for Fe and Cu. Comparatively, the two species of okra varied significantly in their mineral content of the raw and plain sauce. There was also a negative effect of cooking on the mineral contents, which reduced significantly to an average of 30% on a dry weight basis.Therefore, the two vegetables, either as a fresh or sticky sauce, require additional sources of P, K, Na, Mg, Ca, Mn, and Zn to meet recommended dietary allowance. Furthermore, dried mucilagesauce, though, could be an appreciable post harvest management and storage but not without a loss of about one-third mineral content in the process. However, the sauce of common okra andbush okra are good sources for any of the assessed mineral restricted diets.

  3. Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia.

    Science.gov (United States)

    Fiallo-Olivé, Elvira; Navas-Castillo, Jesús; Moriones, Enrique; Martínez-Zubiaur, Yamila

    2012-01-01

    As a result of surveys conducted during the last few years to search for wild reservoirs of begomoviruses in Cuba, we detected a novel bipartite begomovirus, sida yellow mottle virus (SiYMoV), infecting Sida rhombifolia plants. The complete genome sequence was obtained, showing that DNA-A was 2622 nucleotides (nt) in length and that it was most closely related (87.6% nucleotide identity) to DNA-A of an isolate of sida golden mosaic virus (SiGMV) that infects snap beans (Phaseolus vulgaris) in Florida. The DNA-B sequence was 2600 nt in length and shared the highest nucleotide identity (75.1%) with corchorus yellow spot virus (CoYSV). Phylogenetic relationship analysis showed that both DNA components of SiYMoV were grouped in the Abutilon clade, along with begomoviruses from Florida and the Caribbean islands. We also present here the complete nucleotide sequence of a novel strain of sida yellow vein virus found infecting Malvastrum coromandelianum and an isolate of euphorbia mosaic virus that was found for the first time infecting Euphorbia heterophylla in Cuba.

  4. Nitric oxide production by necrotrophic pathogen Macrophomina phaseolina and the host plant in charcoal rot disease of jute: complexity of the interplay between necrotroph-host plant interactions.

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    Tuhin Subhra Sarkar

    Full Text Available M. phaseolina, a global devastating necrotrophic fungal pathogen causes charcoal rot disease in more than 500 host plants. With the aim of understanding the plant-necrotrophic pathogen interaction associated with charcoal rot disease of jute, biochemical approach was attempted to study cellular nitric oxide production under diseased condition. This is the first report on M. phaseolina infection in Corchorus capsularis (jute plants which resulted in elevated nitric oxide, reactive nitrogen species and S nitrosothiols production in infected tissues. Time dependent nitric oxide production was also assessed with 4-Amino-5-Methylamino-2',7'-Difluorofluorescein Diacetate using single leaf experiment both in presence of M. phaseolina and xylanases obtained from fungal secretome. Cellular redox status and redox active enzymes were also assessed during plant fungal interaction. Interestingly, M. phaseolina was found to produce nitric oxide which was detected in vitro inside the mycelium and in the surrounding medium. Addition of mammalian nitric oxide synthase inhibitor could block the nitric oxide production in M. phaseolina. Bioinformatics analysis revealed nitric oxide synthase like sequence with conserved amino acid sequences in M. phaseolina genome sequence. In conclusion, the production of nitric oxide and reactive nitrogen species may have important physiological significance in necrotrophic host pathogen interaction.

  5. Nitric oxide production by necrotrophic pathogen Macrophomina phaseolina and the host plant in charcoal rot disease of jute: complexity of the interplay between necrotroph-host plant interactions.

    Science.gov (United States)

    Sarkar, Tuhin Subhra; Biswas, Pranjal; Ghosh, Subrata Kumar; Ghosh, Sanjay

    2014-01-01

    M. phaseolina, a global devastating necrotrophic fungal pathogen causes charcoal rot disease in more than 500 host plants. With the aim of understanding the plant-necrotrophic pathogen interaction associated with charcoal rot disease of jute, biochemical approach was attempted to study cellular nitric oxide production under diseased condition. This is the first report on M. phaseolina infection in Corchorus capsularis (jute) plants which resulted in elevated nitric oxide, reactive nitrogen species and S nitrosothiols production in infected tissues. Time dependent nitric oxide production was also assessed with 4-Amino-5-Methylamino-2',7'-Difluorofluorescein Diacetate using single leaf experiment both in presence of M. phaseolina and xylanases obtained from fungal secretome. Cellular redox status and redox active enzymes were also assessed during plant fungal interaction. Interestingly, M. phaseolina was found to produce nitric oxide which was detected in vitro inside the mycelium and in the surrounding medium. Addition of mammalian nitric oxide synthase inhibitor could block the nitric oxide production in M. phaseolina. Bioinformatics analysis revealed nitric oxide synthase like sequence with conserved amino acid sequences in M. phaseolina genome sequence. In conclusion, the production of nitric oxide and reactive nitrogen species may have important physiological significance in necrotrophic host pathogen interaction.

  6. Nitric Oxide Production by Necrotrophic Pathogen Macrophomina phaseolina and the Host Plant in Charcoal Rot Disease of Jute: Complexity of the Interplay between Necrotroph–Host Plant Interactions

    Science.gov (United States)

    Sarkar, Tuhin Subhra; Biswas, Pranjal; Ghosh, Subrata Kumar; Ghosh, Sanjay

    2014-01-01

    M. phaseolina, a global devastating necrotrophic fungal pathogen causes charcoal rot disease in more than 500 host plants. With the aim of understanding the plant-necrotrophic pathogen interaction associated with charcoal rot disease of jute, biochemical approach was attempted to study cellular nitric oxide production under diseased condition. This is the first report on M. phaseolina infection in Corchorus capsularis (jute) plants which resulted in elevated nitric oxide, reactive nitrogen species and S nitrosothiols production in infected tissues. Time dependent nitric oxide production was also assessed with 4-Amino-5-Methylamino-2′,7′-Difluorofluorescein Diacetate using single leaf experiment both in presence of M. phaseolina and xylanases obtained from fungal secretome. Cellular redox status and redox active enzymes were also assessed during plant fungal interaction. Interestingly, M. phaseolina was found to produce nitric oxide which was detected in vitro inside the mycelium and in the surrounding medium. Addition of mammalian nitric oxide synthase inhibitor could block the nitric oxide production in M. phaseolina. Bioinformatics analysis revealed nitric oxide synthase like sequence with conserved amino acid sequences in M. phaseolina genome sequence. In conclusion, the production of nitric oxide and reactive nitrogen species may have important physiological significance in necrotrophic host pathogen interaction. PMID:25208092

  7. Mechanical Performance of Montmorillonite Dispersed Jute Reinforced Composite

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    Hasan Muhammad Hasibul

    2015-01-01

    Full Text Available Surface treated jute accomplished by chemical treatments which enhanced the adhesion between polyester resin and modified surface within the composite. Baking time for 6 hours also reduced the moisture content and diminishes the hydrophilic properties of the corchorus olitorius jute fiber. Montmorillonite shell type nanoclay was dispersed 1%, 3% and 5% within the jute fiber polyester matrix to enhance the mechanical performance. Effect of temperature and high humidity were evaluated for this nanoclay filled composite through hydrothermal test for 15 days in the environmental chamber. Environmental degradation was not remarkable due to the exposure of the temperature 80°C and 95% RH for this time period. Ductile properties like yield strength (YS, % of elongation were calculated for two different stoke rate to understand the strain rate effect. 1% addition of nanoclay within the composite shows the better performance in terms of yield, flexural and impact strength while 5% dispersed of nanoclay does not have any beneficial effect within the composite due to the density and non-homogeneous mixture of the clay. Fracture morphology by SEM/ FESEM revealed voids, broken fibers and nano particles within the matrix.

  8. Microbial quality of some vegetables sold in ED DueimTwon, Sudan.

    Science.gov (United States)

    Goja, Arafat Mohammed; Mahmoud, Mohamed Salih Osman

    2013-06-15

    This study was probably the first research carried out to investigate the microbiological quality of some vegetables sold in ED DueimTwon, Sudan. Four species of vegetables were used, Arugula (Eruca sativa), Mloukhia (Corchorus olitorius), Tomato (Lycopersicon esculentum) and Green pepper (Capsicum annuum). The samples were collected and examined according to standardized methods for total viable bacteria, coliforms and fecal coliform count. The average of total viable count ranged from 1.2 x 105-5.6 x 105 CFU mL(-1) for Arugula; 2.1 x 105-2.8 x 107 CFU mL(-1) for Mloukhia; 3.4 x 105-4.8 x 105 for Tomato and 2.3 x 105-8.0 x 106 CFU mL(-1) for Green pepper. However, the maximum level of total and fecal coliform were (93, 21); (28, 11); (75, 15) and (150, 20) MPN 100 mL(-1), respectively. Twelve bacteria belonging to five genera were isolated. Staphylococcus (33%) was the most predominant isolated followed by Enterobacteriaceae (25%), Bacillus (17%) and Streptococcus (17%). Micrococcus (8%) was the least dominant isolated. The results of microbial counts of these vegetable samples in this study indicate that, the agricultural practices, harvesting, hygiene, transporting and selling points are poor and therefore, the higher microbial load could be risked for public health.

  9. Production of extracellular polysaccharide by Bacillus megaterium RB-05 using jute as substrate.

    Science.gov (United States)

    Chowdhury, Sougata Roy; Basak, Ratan Kumar; Sen, Ramkrishna; Adhikari, Basudam

    2011-06-01

    Bacillus megaterium RB-05 was grown on glucose and on "tossa-daisee" (Corchorus olitorius)-derived jute, and production and composition of extracellular polysaccharide (EPS) were monitored. An EPS yield of 0.065 ± 0.013 and of 0.297 g ± 0.054 g(-1) substrate after 72 h was obtained for glucose and jute, respectively. EPS production in the presence of jute paralleled bacterial cellulase activity. High performance liquid chromatography (HPLC), matrix assisted LASER desorption/ionization-time of flight (MALDI-ToF) mass spectroscopy, and fourier transform infrared (FT-IR) spectroscopy demonstrated that the EPS synthesized in jute culture (JC) differed from that synthesized in glucose mineral salts medium (GMSM). While fucose was only a minor constituent (4.9 wt.%) of EPS from GMSM, it a major component (41.9 wt.%) of EPS synthesized in JC. This study establishes jute as an effective fermentation substrate for EPS production by a cellulase-producing bacterium. Copyright © 2011 Elsevier Ltd. All rights reserved.

  10. Thai jute seed oil: a potential polyunsaturated fatty acid source

    Directory of Open Access Journals (Sweden)

    Maitree Suttajit

    2006-03-01

    Full Text Available This study examined lipid and fatty acid compositions of different varieties of jute (Po-kra-jao, Corchorus olitorius L. seed grown in Thailand. Four different jute seeds (Nonn-Soong, Keaw-Yai, Cuba and Khonkaen harvested from northeastern Thailand were ground, their lipid was extracted with chloroform: methanol (2:1, v/v, and lipid composition was determined by Iatroscan (TLC/FID. Fatty acid composition was analyzed using GLC with standard methods. Triacylglycerol was a predominant lipid in jute seed oil, ranging from 70% to 74%, and other two minor components were phytosterol (12% to 28% and diacylglycerol (0% to 9%. The ratio of saturates: monounsaturates: polyunsaturates, was approximately 2: 3: 4. Most predominant polyunsaturated fatty acid (PUFA was linoleic acid (18:2n-6, accounting for 40-67% of total fatty acid. Nonn-Soong had the highest amount of PUFA (67.7%, followed by Khonkaen (44.53%, Keaw-Yai (41.14%, and Cuba (40.19%. Another PUFA found was α-linolenic acid (18:3n-3, accounting for about 1% of total fatty acid. The results indicated that jute seed oil was a potential edible PUFA source. The oils obtained from different kinds of jute seeds had significantly different lipid and fatty acid compositions.

  11. DNA analysis of natural fiber rope.

    Science.gov (United States)

    Dunbar, Mignon; Murphy, Terence M

    2009-01-01

    When rope is found at a crime scene, the type of fiber is currently identified through its microscopic characteristics. However, these characteristics may not always unambiguously distinguish some types of rope from others. If rope samples contain cells from the plants of origin, then DNA analysis may prove to be a better way to identify the type of rope obtained from a crime scene. The objective of this project was to develop techniques of DNA analysis that can be used to differentiate between ropes made from Cannabis sativa L. (hemp), Agave sisalana Perrine (sisal), Musa textilis Née (abaca, "Manila hemp"), Linum usitatissimum L. (flax), and Corchorus olitorus L. (jute). The procedures included extracting the DNA from the rope, performing polymerase chain reaction (PCR) using the extracted DNA as a template, and analyzing the DNA products. A primer pair for PCR, chosen from within a chloroplast gene for the large subunit of ribulose bisphosphate carboxylase/oxygenase, was designed to be specific for plant DNA and complementary to the genes from all five plants. The resulting PCR fragments were approximately 771 base pairs long. The PCR fragments, distinguished through base sequence analysis or restriction enzyme analysis, could be used to identify the five different rope types. The procedure provides a useful addition to visual methods of comparing rope samples.

  12. Traditional treatment of human and animal salmonelloses in Southern Benin: Knowledge of farmers and traditherapists

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    T. V. Dougnon

    2017-06-01

    Full Text Available Aim: This study aimed to report medicinal plants that are likely to be used in the control of salmonellosis. Materials and Methods: A cross-sectional study was conducted in Southern Benin. Semi-structured questionnaires were administered to 150 farmers and 100 traditional therapists in seven high municipalities. This step helped to collect plants that are used in the treatment of animal salmonellosis and typhoid fever in human. Results: The results revealed a low level of use of medicinal plants among breeders who prefer antibiotics such as oxytetracycline (53.55%, tylosine + sulfadimerazine (15.30%, and alphaceryl (19.13%. However, plants such as Moringa oleifera (leaves, Carica papaya (leaves and seeds, and Vernonia amygdalina (leaves were mostly used by some farmers. From traditional therapists, 57 plant species of 32 families were identified as typhoid fever cures; among which Leguminosae, Asteraceae, and Euphorbiaceae were predominant. Persea americana (22.72%, V. amygdalina (7.57%, and Corchorus olitorius (7.57% were the most cited by traditherapists for the treatment of typhoid fever in human. Conclusion: This study provides a database for further studies on the in vitro and in vivo efficacy of Benin plant species on Salmonella spp. These evaluations will guarantee the availability of new therapeutic solutions for populations.

  13. Botanicals to Control Soft Rot Bacteria of Potato

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    M. M. Rahman

    2012-01-01

    Full Text Available Extracts from eleven different plant species such as jute (Corchorus capsularis L., cheerota (Swertia chiraita Ham., chatim (Alstonia scholaris L., mander (Erythrina variegata, bael (Aegle marmelos L., marigold (Tagetes erecta, onion (Allium cepa, garlic (Allium sativum L., neem (Azadiracta indica, lime (Citrus aurantifolia, and turmeric (Curcuma longa L. were tested for antibacterial activity against potato soft rot bacteria, E. carotovora subsp. carotovora (Ecc P-138, under in vitro and storage conditions. Previously, Ecc P-138 was identified as the most aggressive soft rot bacterium in Bangladeshi potatoes. Of the 11 different plant extracts, only extracts from dried jute leaves and cheerota significantly inhibited growth of Ecc P-138 in vitro. Finally, both plant extracts were tested to control the soft rot disease of potato tuber under storage conditions. In a 22-week storage condition, the treated potatoes were significantly more protected against the soft rot infection than those of untreated samples in terms of infection rate and weight loss. The jute leaf extracts showed more pronounced inhibitory effects on Ecc-138 growth both in in vitro and storage experiments.

  14. Food effect: The combined effect of media pH and viscosity on the gastrointestinal absorption of ciprofloxacin tablet.

    Science.gov (United States)

    Radwan, Asma; Zaid, Abdel Naser; Jaradat, Nidal; Odeh, Yousef

    2017-04-01

    The clinical implications of food-drug interactions may have to be taken seriously into account with oral drugs administration in order to minimize variations in drug bioavailability. Food intake may alter physiological changes in the pH and viscosity of the gastrointestinal lumen, which could affect the oral absorption of drugs. The aim of the present study was to have an insight on the effect of media parameters: viscosity and pHon the oral absorption of ciprofloxacin HCl from solid formulations using a model food: Corchorus olitorius (Jute) Soup. In vitro disintegration and dissolution rates of ciprofloxacin tablet were evaluated using compendia buffer media in the presence/absence of C. olitorius leaves. These in vitro data were then input to GastroPlus™ to predict ciprofloxacin absorption profiles under fasted and fed states. The present study demonstrated the significance of luminal pH and viscosity on the dissolution and disintegration of solid formulations following postprandial ingestion of the viscous soup. The tablets showed prolonged disintegration times and reduced dissolution rates in this soup, which could be attributed to the postprandial elevation in media viscosity and reduced solubility at elevated gastricpH. The predicted model under fed state showed no impact on AUC but prolonged Tmax and a decrease in Cmax. Concomitant intake of C. olitorius soup with ciprofloxacin might have negative effect on the rate of drug release from conventional immediate release tablets. Copyright © 2017 Elsevier B.V. All rights reserved.

  15. Plantas daninhas em pastagens de várzeas no Estado de Minas Gerais Meadow holm pasture weeds in fields in the State of Minas Gerais

    Directory of Open Access Journals (Sweden)

    J.F.R. Lara

    2003-04-01

    Full Text Available O controle das plantas daninhas pode onerar os custos da produção agropecuária e causar danos ao meio ambiente. Com o objetivo de conhecer a flora infestante que ocorre em pastagens formadas nas várzeas que margeiam o Rio São Francisco, foi realizado um estudo, no período de maio de 1997 a abril de 1999, nos municípios de Iguatama, Bom Despacho, Luz, Martinho Campos, Pompéu e Abaeté, localizados no Estado de Minas Gerais, Brasil. Cem amostras de 0,50 x 0,50 cm foram coletadas em cada local, a partir das quais foram calculados os parâmetros freqüência, densidade, abundância, índice de valor de importância de cada espécie e índice de similaridade entre as áreas. Ao todo foram identificadas 110 espécies de plantas daninhas invasoras, pertencentes a 29 famílias, sendo Asteraceae a que apresentou maior número de espécies em todos os locais. As espécies mais importantes foram: Vernonia polyanthes, em Iguatama (IVI = 69,32; Corchorus hirtus, em Bom Despacho (IVI = 54,87; Echinochloa cruz-galli, em Pompéu (IVI = 42,27; Ipomoea grandifolia, em Martinho Campos (IVI = 39,13; Hypenia densiflora, em Abaeté (IVI = 33,46; e Sida rhombifolia, em Luz (IVI = 28,41. O índice de similaridade calculado entre as áreas foi baixo.Weed control can raise production costs in agriculture, causing damages to the environment. This study was carried out to investigate the weed populations occurring in pasture of six counties located along the São Francisco River, Minas Gerais, Brazil, from May 1997 to April 1999, in Iguatama, Bom Despacho, Luz, Martinho Campos, Pompéu and Abaeté. One hundred samples of 0.50 m x 0.50 m from each site were used to calculate frequency, density, abundance, value of importance of each species and the similarity index among the sites. A total of 110 weed species were identified, from 29 botanical families, with the Asteraceae being the family with the greatest number of species in all the sites. The most important

  16. Nutritional quality and safety aspects of wild vegetables consume in Bangladesh

    Institute of Scientific and Technical Information of China (English)

    Miah Mohammed Abdus Satter; Mohammed Murtaza Reza Linkon Khan; Syeda Absha Jabin; Nusrat Abedin; Mohammed Faridul Islam; Badhan Shaha

    2016-01-01

    Objective: To evaluate the nutritional composition, including major minerals, essential trace elements and toxic heavy metals of five different wild vegetables Dhekishak(Dryopteris filix-mas), Helencha(Enhydra fluctuans), Kalmishak(Ipomoea aquatica),Patshak(Corchorus capsularis) and Shapla stem(Nymphaea stellata) and their safety aspects.Methods: Proximate parameters moisture, ash, fat, fiber, protein, carbohydrate and energy; major minerals Na, K, Ca and Mg; trace elements Fe, Zn and Cu; and toxic heavy metals Pb, Cd, Cr, Ni and Hg were evaluated in the selected wild vegetables using the standard food analysis techniques.Results: The results from nutritional analysis showed that all the wild vegetables used in this study had a low content of crude fat and high content of moisture, ash, crude protein,crude fiber, carbohydrate and energy having the recommended dietary allowances. The vegetables were also rich in major minerals Na, K, Ca and Mg, sufficient in essential trace elements Fe, Cu and Zn while the heavy metals Pb, Cr and Ni were detected higher in amount in all the vegetables except Patshak than the limits recommended by Food and Agriculture Organization/World Health Organization. The heavy metals Cd and Hg were not detected in any vegetable.Conclusions: The outcome of this study suggests that the wild vegetables have very good nutritional potential to meet the recommended dietary allowances, but special awareness should be taken for public health concern about the high level of Pb, Cr and Ni which exceed the Food and Agriculture Organization/World Health Organization recommended limits for the metals in vegetables.

  17. EFFECT OF THE ADDITION OF DEFATTED OKRA SEED (Abelmoschus esculentus FLOUR ON THE CHEMICAL COMPOSITION, FUNCTIONAL PROPERTIES AND Zn BIOAVAILABILITY OF PLANTAIN (Musa paradisiacal Linn FLOUR

    Directory of Open Access Journals (Sweden)

    Tesleem Ibrahim

    2012-08-01

    Full Text Available In Nigeria it is advised that nursing mothers should give their baby plantain flour paste “amala ogede” with ‘ewedu’ Corchorus olitorius soup during the process of weaning their baby. The over matured okra that cannot be cut with kitchen knife are thrown away in Nigeria, this lead to postharvest loss of okra. The seed in this okra could be utilised by processing into okra seed flour for the fortification of plantain flour. Since the okra seed flour is rich in oil and the oil contains cyclopropenoid fatty acids which cause some toxicity concerns therefore this work is to evaluate the chemical composition, the functional properties and Zn bioavailability of plantain flour mixed with defatted okra seed flour. The nutrient content increased significantly (P≤0.05, protein; 3.88 – 11.38 %, fibre; 3.03 – 16.30 % and ash; 2.72 – 5.77 % while the fat and carbohydrate content reduced significantly (P≤0.05 as the percentage of defatted okra seed flour increased. The bulk density of the plantain flour decreased significantly (P≤0.05 from 0.795 g/cm3 to 0.769 g/cm3 as the percentage of okra seed flour increased while the least gelation concentration increased significantly (P≤0.05 (10 to 20. The calculated [Ca][Phytate]/[Zn] molar ratio for the plantain flour mixed with defatted okra seed flour (0.02 – 0.04 mol/kg were below the critical level. The increase in the least gelation concentration coupled with increase in the protein content of the resultant flour from the blend means more of the protein will be available in the food made from the plantain flour mixed with defatted okra seed flour.

  18. Pathways associated with lignin biosynthesis in lignomaniac jute fibres.

    Science.gov (United States)

    Chakraborty, Avrajit; Sarkar, Debabrata; Satya, Pratik; Karmakar, Pran Gobinda; Singh, Nagendra Kumar

    2015-08-01

    We generated the bast transcriptomes of a deficient lignified phloem fibre mutant and its wild-type jute (Corchorus capsularis) using Illumina paired-end sequencing. A total of 34,163 wild-type and 29,463 mutant unigenes, with average lengths of 1442 and 1136 bp, respectively, were assembled de novo, ~77-79 % of which were functionally annotated. These annotated unigenes were assigned to COG (~37-40 %) and GO (~22-28 %) classifications and mapped to 189 KEGG pathways (~19-21 %). We discovered 38 and 43 isoforms of 16 and 10 genes of the upstream shikimate-aromatic amino acid and downstream monolignol biosynthetic pathways, respectively, rendered their sequence similarities, confirmed the identities of 22 of these candidate gene families by phylogenetic analyses and reconstructed the pathway leading to lignin biosynthesis in jute fibres. We also identified major genes and bast-related transcription factors involved in secondary cell wall (SCW) formation. The quantitative RT-PCRs revealed that phenylalanine ammonia-lyase 1 (CcPAL1) was co-down-regulated with several genes of the upstream shikimate pathway in mutant bast tissues at an early growth stage, although its expression relapsed to the normal level at the later growth stage. However, cinnamyl alcohol dehydrogenase 7 (CcCAD7) was strongly down-regulated in mutant bast tissues irrespective of growth stages. CcCAD7 disruption at an early growth stage was accompanied by co-up-regulation of SCW-specific genes cellulose synthase A7 (CcCesA7) and fasciclin-like arabinogalactan 6 (CcFLA6), which was predicted to be involved in coordinating the S-layers' deposition in the xylan-type jute fibres. Our results identified CAD as a promising target for developing low-lignin jute fibres using genomics-assisted molecular approaches.

  19. Nutrient and Total Polyphenol Contents of Dark Green Leafy Vegetables, and Estimation of Their Iron Bioaccessibility Using the In Vitro Digestion/Caco-2 Cell Model

    Directory of Open Access Journals (Sweden)

    Francis Kweku Amagloh

    2017-07-01

    Full Text Available Dark green leafy vegetables (DGLVs are considered as important sources of iron and vitamin A. However, iron concentration may not indicate bioaccessibility. The objectives of this study were to compare the nutrient content and iron bioaccessibility of five sweet potato cultivars, including three orange-fleshed types, with other commonly consumed DGLVs in Ghana: cocoyam, corchorus, baobab, kenaf and moringa, using the in vitro digestion/Caco-2 cell model. Moringa had the highest numbers of iron absorption enhancers on an “as-would-be-eaten” basis, β-carotene (14169 μg/100 g; p < 0.05 and ascorbic acid (46.30 mg/100 g; p < 0.001, and the best iron bioaccessibility (10.28 ng ferritin/mg protein. Baobab and an orange-fleshed sweet potato with purplish young leaves had a lower iron bioaccessibility (6.51 and 6.76 ng ferritin/mg protein, respectively compared with that of moringa, although these three greens contained similar (p > 0.05 iron (averaging 4.18 mg/100 g and β-carotene levels. The ascorbic acid concentration of 25.50 mg/100 g in the cooked baobab did not enhance the iron bioaccessibility. Baobab and the orange-fleshed sweet potato with purplish young leaves contained the highest levels of total polyphenols (1646.75 and 506.95 mg Gallic Acid Equivalents/100 g, respectively; p < 0.001. This suggests that iron bioaccessibility in greens cannot be inferred based on the mineral concentration. Based on the similarity of the iron bioaccessibility of the sweet potato leaves and cocoyam leaf (a widely-promoted “nutritious” DGLV in Ghana, the former greens have an added advantage of increasing the dietary intake of provitamin A.

  20. Conversion of finished leather waste incorporated with plant fibers into value added consumer products - An effort to minimize solid waste in Ethiopia.

    Science.gov (United States)

    Teklay, A; Gebeyehu, G; Getachew, T; Yaynshet, T; Sastry, T P

    2017-07-29

    Presently, the leftovers from leather product industries are discarded as waste in Ethiopia. The objective of the present study was therefore, to prepare composite sheets by incorporating various plant fibers like enset (Ensete ventricosum), hibiscus (Hibiscus cannabinus), jute (Corchorus trilocularis L.), palm (Phoenix dactylifera) and sisal (Agave sisal) in various proportions into the leather waste. Resin binder (RB) and natural rubber latex (NRL) were used as binding agents for the preparation of the composite sheets. The composite sheets prepared were characterized for their physicochemical properties (tensile strength, elongation at break, stitch tear strength, water absorption, water desorption and flexing strength). Composite sheets prepared using RB having 10% hibiscus, 20% palm and 40% sisal fibers showed better mechanical properties than their respective controls. In composite sheets prepared using NRL having 30% jute fiber exhibited better mechanical properties than its control. Most of the plant fibers used in this study played a role in increasing the performance of the sheets. However, as seen from the results, the contribution of these plant fibers on performance of the composite sheets prepared is dependent on the ratio used and the nature of binder. The SEM studies have exhibited the composite nature of the sheets and FTIR studies have shown the functional groups of collagen protein, cellulose and binders. The prepared sheets were used as raw materials for preparation of items like stiff hand bags, ladies' purse, keychain, chappal upper, wallet, wall cover, mouse pad and other interior decorating products. By preparing such value added products, we can reduce solid waste; minimize environmental pollution and thereby securing environmental sustainability. Copyright © 2017 Elsevier Ltd. All rights reserved.

  1. Egyptian plant species as new ozone indicators

    Energy Technology Data Exchange (ETDEWEB)

    Madkour, S.A.; Laurence, J.A

    2002-12-01

    Of more than 30 species of plants from Egypt screened for sensitivity to ozone, four were found to be suitable for use as bioindicators. - The aim of this study was to test and select one or more highly sensitive, specific and environmentally successful Egyptian bioindicator plants for ozone (O{sub 3}). For that purpose more than 30 Egyptian species and cultivars were subjected to extensive screening studies under controlled environmental and pollutant exposure conditions to mimic the Egyptian environmental conditions and O{sub 3} levels in urban and rural sites. Four plant species were found to be more sensitive to O{sub 3} than the universally used O{sub 3}-bioindicator, tobacco Bel W3, under the Egyptian environmental conditions used. These plant species, jute (Corchorus olitorius c.v. local), clover (Trifolium alexandrinum L. c.v. Masry), garden rocket (Eruca sativa c.v. local) and alfalfa (Medicago sativa L. c.v. local), ranked in order of decreasing sensitivity, exhibited typical O{sub 3} injury symptoms faster and at lower O{sub 3} concentrations than Bel W3. Three variables were tested in search of a reliable tool for the diagnosis and prediction of O{sub 3} response prior to the appearance of visible foliar symptoms: pigment degradation, stomatal conductance (g{sub s}) and net photosynthetic CO{sub 2} assimilation (P{sub net}). Pigment degradation was found to be unreliable in predicting species sensitivity to O{sub 3}. Evidence supporting stomatal conductance involvement in O{sub 3} tolerance was found only in tolerant species. A good correlation was found between g{sub s}, restriction of O{sub 3} and CO{sub 2} influx into the mesophyll tissues, and P{sub net}. Changes in P{sub net} seemed to depend largely on fluctuations in g{sub s}.

  2. Influence of fibre-surface treatment on structural, thermal and mechanical properties of jute fibre and its composite

    Indian Academy of Sciences (India)

    E Sinha; S K Rout

    2009-02-01

    Jute fibres (Corchorus olitorious), an environmentally and ecologically friendly product, were chemically modified and treated with 5% NaOH solution at room temperature for 2 h, 4 h and 8 h. The above samples were characterized and morphologically analysed by X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT–IR), differential scanning calorimetry (DSC), scanning electron microscopy (SEM) and Instron 1185. Alkali treatment affects the supramolecular structure of the fibre as shown by XRD by improving the degree of crystallinity of the fibre. Surface chemistry of the fibre also altered as depicted by FT–IR studies. This chemical treatment was also found to alter the characteristic of the fibre surface topography as seen by the SEM. From the mechanical single fibre test it was found that the tenacity and modulus of the fibre improved after alkali treatment. This might be due to the improvement in the crystallinity. DSC data demonstrated that the thermal degradation temperature for the cellulose get lowered from 365.26°C to 360.62°C after alkali treatment led to the reduction in fibre thermal stability. Jute fibre reinforced composite were prepared with treated and untreated jute fibre (15 wt%) reinforced unsaturated polyester (UPE). Effectiveness of these composites was experimentally investigated through the study of the composites by DSC, Instron 1195 for mechanical property of composites, volume fraction of the porosity and hydrophobic finishing of the composite. From the DSC analysis it was found that thermal stability enhanced for treated fibre reinforced composite. This could be due to the resistance offered by the closely packed cellulose chain in combination with the resin. Flexural strength of the composite prepared with 2 h and 4 h alkali treated fibre were found to increase by 3.16% and 9.5%, respectively. Although 8 h treated fibre exhibited maximum strength properties, but the composite prepared with them showed lower strength

  3. Screening des microorganismes à potentialités fermentaires pour le manioc

    Directory of Open Access Journals (Sweden)

    Essia Ngang, JJ.

    2005-01-01

    Full Text Available Screening for Properties of some Strains of Lactobacilli with Potentials Applications as Starter Culture for cassava fermentation. The present study is focussed on the nutritional importance of consumed leafy vegetables in Bini- Dang situated in the Adamawa savannah in Ngaoundere (Cameroon. Firstly, inquiries are held on some ethnonutritional data on the usage and consumption of leafy vegetables. Secondly, physicochemical analyses have been carried out on some nutrient and antinutrient contents of eight most consumed leafy vegetables recorded. They are: Thalinum triangulare, Momordica charantia, Moringa oleifera, Hibiscus cannabinus, H. sabdariffa, Cerathotheca sesamoïdes, Corchorus olithorus and Vigna unguiculata. Results obtained show that: the locality of Bini- Dang has an ethnic diversity with about 103 families composed of 19 ethnic groups, giving a total of 621 persons (adults and children interrogated. Twentyfour leafy vegetables of different species are consumed. Among these vegetables, 66.66% are cultivated, 33.33% are picked from nature. The results based on statistical analyses of nutrients and antinutrients (P≤ 0.05 showed that these leafy vegetables were high in levels of carbohydrates 43.35 0.03% (C. olithorus to 50.16 0.01% (H. sabdariffa dry weight (DW and average levels of proteins ranged from 18.39 0.01% DW (H. sabdariffa to 26.48 0.01% DW (V. unguiculata. Total ashes are also important with contents between 8% (M. oleifera and 14% (T. triangulare. Iron, the most representative mineral was found to be between 3.81 0.12% for M. oleifera and 10.13 0.36% for M. charantia. It was the only mineral found in high quantity. Vitamin C was also found to be high in V. unguiculata and T. triangulare more than 4% and the levels of pigments and antinutrents were low in all the vegetables analysed. The fibre levels were between 10.63 0.18% DW for M. charantia and 15.40 0.13% DW for H. sabdariffa. These leafy vegetables studied were found

  4. Genetic analysis on yield, panicle and grain traits in rice RIL population of long panicle and big grain%水稻长穗大粒RIL群体产量、穗部和谷粒性状的遗传分析

    Institute of Scientific and Technical Information of China (English)

    林志强; 郑燕; 蔡英杰; 黄姗; 李志勇; 沈伟伟; 郑秀娟; 梁康迳

    2011-01-01

    to classify 9 counties into several classes. The results indicated that the climatic feasibility indexes (CFI) for flue-cured tobacco was 0.839 ±0.040 and ranged from0.761 to 0.875, all the counties were feasible or most feasible tobacco-growing areas. Two principal components of Qujing flue-cured tobacco climate (total contribution of 87.064% ) were extracted by principal component analysis, which were constituted by humidity factor and temperature factor. Nine counties were grouped into 3 dusters: I . Fuyuan, Shizong and Luoping, II . Luliang, Qilin, Xuanwei, Malong and Zhanyi, Ⅲ. Huize. Flue-cured tobacco; climate; feasibility; comprehensive evaluation; principal component cluster analysisGenomic DNA from jute (Corchorus capsularis L. ) extracted with modified CTAB method was tested for its concentration and quality by agarose gel electrophoresis and concentration detection. An optimum SRAP-PCR system was established based on optimizing the key factors of SRAP - PCR reaction system in jute. The results showed that the DNA isolated with modified CTAB method was in good quality, pure and integral. Z)260 nm/D280 nm value of the DNA was 1.7-1.9 using ultraviolet spectrophotometer determination. There was no degradation appeared and the proteins, phenols, etc. Were eliminated completely. The optimum SRAP-PCR reaction system could amplify high levels of polymorphism, had good repeatability and clear band pattern. SRAP system (total volume of 25 μL) was established as follows; Taq DNA polymerase 1.75 U, Mg2+ 3.0 mmol · L-1, dNTPs 0.16 mmol ? L-1, forward primer 0.51 μmol ? L-1, reverse primer 0.51 μmol ? L-1, template DNA 80 -120 ng. It was showed that the optimized system in this study can be applied in the SRAP analysis for jute. Key words; jute {Corchorus capsularis L. ) ; DNA extraction; sequence-related amplified polymorphism (SRAP)The effect of pesticide residues on the biochemical composition in the tea leaf and the quality of tea was discussed. The results