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Sample records for col5a1 fine genetic

  1. COL5A1: Fine genetic mapping, intron/exon organization, and exclusion as candidate gene in families with tuberous sclerosis complex 1, hereditary hemorrhagic telangiectasia, and Ehlers-Danlos syndrome type II

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    Greenspan, D.S. [Univ. of Wisconsin, Madison, WI (United States); Papenberg, K.A.; Marchuk, D.A. [Duke Univ., Durham, NC (United States)] [and others

    1994-09-01

    Type V collagen is the only fibrillar collagen which has yet to be implicated in the pathogenesis of genetic diseases in humans or mice. To begin examining the possible role of type V collagen in genetic disease, we have previously mapped COL5A1, the gene for the {alpha}1 chain of type V collagen, to 9q23.2{r_arrow}q34.3 and described two restriction site polymorphisms which allowed us to exclude COL5A1 as candidate gene for nail-patella syndrome. We have now used these polymorphisms to exclude COL5A1 as candidate gene for tuberous sclerosis complex 1 and Ehlers-Danlos syndrome type II. In addition, we describe a CA repeat, with observed heterozygosity of about 0.5, in a COL5A1 intron, which has allowed us to exclude COL5A1 as a candidate gene in hereditary hemorrhagic telangiectasia and to place COL5A1 on the CEPH family genetic map between markers D9S66 and D9S67. We have also determined the entire intron/exon organization of COL5A1, which will facilitate characterization of mutations in genetic diseases with which COL5A1 may be linked in future studies.

  2. Genetic association of COL5A1 variants in keratoconus patients suggests a complex connection between corneal thinning and keratoconus.

    Science.gov (United States)

    Li, Xiaohui; Bykhovskaya, Yelena; Canedo, Ana Laura Caiado; Haritunians, Talin; Siscovick, David; Aldave, Anthony J; Szczotka-Flynn, Loretta; Iyengar, Sudha K; Rotter, Jerome I; Taylor, Kent D; Rabinowitz, Yaron S

    2013-04-12

    Single nucleotide polymorphisms (SNPs) located near or within the COL5A1 gene, at 9q34.2-q34.3 chromosomal region have been reported in association with central corneal thickness (CCT). Using family linkage analysis, we identified a keratoconus susceptibility locus at 9q34. These findings led us to perform an association study between COL5A1 variation and keratoconus susceptibility. A Caucasian case-control cohort of 222 keratoconus patients and 3324 controls was selected as the discovery panel. An independent case-control panel of 304 cases and 518 controls and a family panel of 186 subjects were replicated for genotyping and association. Forty-four SNPs (21 for discovery and 23 for fine-mapping) spanning 300 kilobases in and around COL5A1 were genotyped and tested for genetic association. Logistic regression models implemented in PLINK were used to test for association in case controls. Generalized estimating equation models accounting for familial correlations implemented in genome-wide interaction analyses with family data were used for association testing in families. Two CCT associated SNPs (rs1536482 and rs7044529 near and within COL5A1) were identified in the keratoconus discovery cohort (P values of 6.5 × 10(-3) and 7.4 × 10(-3)). SNP rs1536482 was replicated in the second case-control sample (P = 0.02), and SNP rs7044529 was replicated in a keratoconus family panel (P = 0.03). Meta P values of rs1536482 and rs7044529 in the keratoconus cohorts were 1.5 × 10(-4) (odds ratio [OR] = 1.30) and 2.9 × 10(-3) (OR = 1.39). After Bonferroni correction, the association of SNP rs1536482 remained significant (P = 6.5 × 10(-3)). SNPs in the COL5A1 region, which regulate normal variation in CCT, may play a role in the thinning associated with keratoconus.

  3. COL5A1: Genetic mapping and exclusion as candidate gene in families with nail-patella syndrome, tuberous sclerosis 1, hereditary hemorrhagic telangiectasia, and Ehlers-Danlos syndrome type II

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    Greenspan, D.S. [Univ. of Wisconsin Medical School, Madison, WI (United States); Northrup, H.; Au, K.S. [Univ. of Texas Medical School, Houston, TX (United States)] [and others

    1995-02-10

    COL5A1, the gene for the {alpha}1 chain of type V collagen, has been considered a candidate gene for certain diseases based on chromosomal location and/or disease phenotype. We have employed 3{prime}-untranslated region RFLPs to exclude COL5A1 as a candidate gene in families with tuberous sclerosis 1, Ehlers-Danlos syndrome type H, and nail-patella syndrome. In addition, we describe a polymorphic simple sequence repeat (SSR) within a COL5A1 intron. This SSR is used to exclude COL5A1 as a candidate gene in hereditary hemorrhagic telangiectasia (Osler-Rendu-Weber disease) and to add COL5A1 to the existing map of {open_quotes}index{close_quotes} markers of chromosome 9 by evaluation of the COL5A1 locus on the CEPH 40-family reference pedigree set. This genetic mapping places COL5A1 between markers D9S66 and D9S67. 14 refs., 1 fig., 2 tabs.

  4. Can Genetics Predict Sports Injury? The Association of the Genes GDF5, AMPD1, COL5A1 and IGF2 on Soccer Player Injury Occurrence

    Directory of Open Access Journals (Sweden)

    Kiah McCabe

    2018-03-01

    Full Text Available Genetics plays an integral role in athletic performance and is increasingly becoming recognised as an important risk factor for injury. Ankle and knee injuries are the most common injuries sustained by soccer players. Often these injuries result in players missing training and matches, which can incur significant costs to clubs. This study aimed to identify genotypes associated with ankle and knee injuries in soccer players and how these impacted the number of matches played. 289 soccer players, including 46 professional, 98 semi-professional and 145 amateur players, were genetically tested. Ankle and knee injuries and the number of matches played were recorded during the 2014/15 season. Four genes were assessed in relation to injury. Genotypes found to be associated with injury included the TT (nucleobase genotype of the GDF5 gene, TT and CT (nucleobase genotypes of AMPD1 gene, TT genotype of COL5A1 and GG (nucleobase genotype of IGF2 gene. These genes were also associated with a decrease in the number of matches played.

  5. Is the COL5A1 rs12722 gene polymorphism associated with running economy?

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    Rômulo Bertuzzi

    Full Text Available The COL5A1 rs12722 polymorphism is considered to be a novel genetic marker for endurance running performance. It has been postulated that COL5A1 rs12722 may influence the elasticity of tendons and the energetic cost of running. To date, there are no experimental data in the literature supporting the relationship between range of motion, running economy, and the COL5A1 rs12722 gene polymorphism. Therefore, the main purpose of the current study was to analyze the influence of the COL5A1rs12722 polymorphism on running economy and range of motion. One hundred and fifty (n = 150 physically active young men performed the following tests: a a maximal incremental treadmill test, b two constant-speed running tests (10 km · h(-1 and 12 km · h(-1 to determine the running economy, and c a sit-and-reach test to determine the range of motion. All of the subjects were genotyped for the COL5A1 rs12722 single-nucleotide polymorphism. The genotype frequencies were TT = 27.9%, CT = 55.8%, and CC = 16.3%. There were no significant differences between COL5A1 genotypes for running economy measured at 10 km · h(-1 (p = 0.232 and 12 km · h(-1 (p = 0.259. Similarly, there were no significant differences between COL5A1 genotypes for range of motion (p = 0.337. These findings suggest that the previous relationship reported between COL5A1 rs12722 genotypes and running endurance performance might not be mediated by the energetic cost of running.

  6. Is the COL5A1 rs12722 Gene Polymorphism Associated with Running Economy?

    Science.gov (United States)

    Bertuzzi, Rômulo; Pasqua, Leonardo A.; Bueno, Salomão; Lima-Silva, Adriano Eduardo; Matsuda, Monique; Marquezini, Monica; Saldiva, Paulo H.

    2014-01-01

    The COL5A1 rs12722 polymorphism is considered to be a novel genetic marker for endurance running performance. It has been postulated that COL5A1 rs12722 may influence the elasticity of tendons and the energetic cost of running. To date, there are no experimental data in the literature supporting the relationship between range of motion, running economy, and the COL5A1 rs12722 gene polymorphism. Therefore, the main purpose of the current study was to analyze the influence of the COL5A1rs12722 polymorphism on running economy and range of motion. One hundred and fifty (n = 150) physically active young men performed the following tests: a) a maximal incremental treadmill test, b) two constant-speed running tests (10 km•h−1 and 12 km•h−1) to determine the running economy, and c) a sit-and-reach test to determine the range of motion. All of the subjects were genotyped for the COL5A1 rs12722 single-nucleotide polymorphism. The genotype frequencies were TT = 27.9%, CT = 55.8%, and CC = 16.3%. There were no significant differences between COL5A1 genotypes for running economy measured at 10 km•h−1 (p = 0.232) and 12 km•h−1 (p = 0.259). Similarly, there were no significant differences between COL5A1 genotypes for range of motion (p = 0.337). These findings suggest that the previous relationship reported between COL5A1 rs12722 genotypes and running endurance performance might not be mediated by the energetic cost of running. PMID:25188268

  7. The COL5A1 gene and musculoskeletal soft-tissue injuries ...

    African Journals Online (AJOL)

    Among other variants the BstUI restriction fragment length polymorphism (RFLP) within the COL5A1 gene has been shown to be over-represented in asymptomatic participants when compared with those with chronic Achilles tendinopathy, and in asymptomatic female participants when compared with those with ACL ...

  8. Influence of the COL5A1 rs12722 on musculoskeletal injuries in professional soccer players.

    Science.gov (United States)

    Massidda, M; Bachis, V; Corrias, L; Piras, F; Scorcu, M; Calò, C M

    2015-11-01

    The aim of this study was to investigate whether COL5A1 rs12722 polymorphism is associated with musculoskeletal injuries in elite soccer players. Fifty-four male professional soccer players of European origin (25.9±4.3 years) were recruited from a team participating at the Official Italian Professional Championship during four consecutive seasons (2009-2013). The incidence and severity of musculoskeletal injuries and its relationship to COL5A1 rs12722 polymorphism were analyzed. DNA was extracted from buccal swab. The cohort was genotyped for the COL5A1 rs12722 single nucleotide polymorphism (SNP) through PCR and enzyme digestion with BstUI, and musculoskeletal injuries data were collected during the four seasons. Injuries were categorized under 5 degrees of severity based on the number of days' absence, while musculoskeletal injuries incidence was calculated per 1,000 hours of exposure to training and matches ((∑ injuries/∑ exposure hours) x 1000). No significant differences were found among genotypes for incidence of musculoskeletal injuries (P=0.683). Participants with TT genotype (3.71±0.5, N.=4) showed a trend (P=0.193) versus an higher severity of injuries than individuals with TC (2.98±0.8, N.=10) or CC (2.75±0.95, n=4) genotypes. The COL5A1 rs12722 accounted for 44% of severity of injuries (P=0.002). In conclusion, the COL5A1 rs12722 was found to be associated with severity of musculoskeletal injuries but not with incidence of musculoskeletal injuries in top-level soccer players.

  9. Familial Ehlers-Danlos syndrome with lethal arterial events caused by a mutation in COL5A1.

    Science.gov (United States)

    Monroe, Glen R; Harakalova, Magdalena; van der Crabben, Saskia N; Majoor-Krakauer, Danielle; Bertoli-Avella, Aida M; Moll, Frans L; Oranen, Björn I; Dooijes, Dennis; Vink, Aryan; Knoers, Nine V; Maugeri, Alessandra; Pals, Gerard; Nijman, Isaac J; van Haaften, Gijs; Baas, Annette F

    2015-06-01

    Different forms of Ehlers-Danlos syndrome (EDS) exist, with specific phenotypes and associated genes. Vascular EDS, caused by heterozygous mutations in the COL3A1 gene, is characterized by fragile vasculature with a high risk of catastrophic vascular events at a young age. Classic EDS, caused by heterozygous mutations in the COL5A1 or COL5A2 genes, is characterized by fragile, hyperextensible skin and joint laxity. To date, vessel rupture in four unrelated classic EDS patients with a confirmed COL5A1 mutation has been reported. We describe familial occurrence of a phenotype resembling vascular EDS in a mother and her two sons, who all died at an early age from arterial ruptures. Diagnostic Sanger sequencing in the proband failed to detect aberrations in COL3A1, COL1A1, COL1A2, TGFBR1, TGFBR2, SMAD3, and ACTA2. Next, the proband's DNA was analyzed using a next-generation sequencing approach targeting 554 genes linked to vascular disease (VASCULOME project). A novel heterozygous mutation in COL5A1 was detected, resulting in an essential glycine substitution at the C-terminal end of the triple helix domain (NM_000093.4:c.4610G>T; p.Gly1537Val). This mutation was also present in DNA isolated from autopsy material of the index's brother. No material was available from the mother, but the mutation was excluded in her parents, siblings and in the father of her sons, suggesting that the COL5A1 mutation occurred in the mother's genome de novo. In conclusion, we report familial occurrence of lethal arterial events caused by a COL5A1 mutation. © 2015 Wiley Periodicals, Inc.

  10. Mutations in the COL5A1 gene are causal in the Ehlers-Danlos syndromes I and II

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    De Paepe, A.; Nuytinck, L.; Naeyaert, J.M. [Universitaets-Hautklinik Heidelberg (Germany)] [and others

    1997-03-01

    The Ehlers-Danlos syndrome (EDS) is a heterogeneous connective-tissue disorder of which at least nine subtypes are recognized. Considerable clinical overlap exists between the EDS I and II subtypes, suggesting that both are allelic disorders. Recent evidence based on linkage and transgenic mice studies suggest that collagen V is causally involved in human EDS. Collagen V forms heterotypic fibrils with collagen I in many tissues and plays an important role in collagen I fibrillogenesis. We have identified a mutation in COL5A1, the gene encoding the pro{alpha}1(V) collagen chain, segregating with EDS I in a four-generation family. The mutation causes the substitution of the most 5{prime} cysteine residue by a serine within a highly conserved sequence of the pro{alpha}1(V) C-propeptide domain and causes reduction of collagen V by preventing incorporation of the mutant pro{alpha}1 (V) chains in the collagen V trimers. In addition, we have detected splicing defects in the COL5A1 gene in a patient with EDS I and in a family with EDS II. These findings confirm the causal role of collagen V in at least a subgroup of EDS I, prove that EDS I and II are allelic conditions, and represent a, so far, unique example of a human collagen disorder caused by substitution of a highly conserved cysteine residue in the C-propeptide domain of a fibrillar collagen. 30 refs., 6 figs., 2 tabs.

  11. A novel splice variant in the N-propeptide of COL5A1 causes an EDS phenotype with severe kyphoscoliosis and eye involvement.

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    Sofie Symoens

    Full Text Available BACKGROUND: The Ehlers-Danlos Syndrome (EDS is a heritable connective tissue disorder characterized by hyperextensible skin, joint hypermobility and soft tissue fragility. The classic subtype of EDS is caused by mutations in one of the type V collagen genes (COL5A1 and COL5A2. Most mutations affect the type V collagen helical domain and lead to a diminished or structurally abnormal type V collagen protein. Remarkably, only two mutations were reported to affect the extended, highly conserved N-propeptide domain, which plays an important role in the regulation of the heterotypic collagen fibril diameter. We identified a novel COL5A1 N-propeptide mutation, resulting in an unusual but severe classic EDS phenotype and a remarkable splicing outcome. METHODOLOGY/PRINCIPAL FINDINGS: We identified a novel COL5A1 N-propeptide acceptor-splice site mutation (IVS6-2A>G, NM_000093.3_c.925-2A>G in a patient with cutaneous features of EDS, severe progressive scoliosis and eye involvement. Two mutant transcripts were identified, one with an exon 7 skip and one in which exon 7 and the upstream exon 6 are deleted. Both transcripts are expressed and secreted into the extracellular matrix, where they can participate in and perturb collagen fibrillogenesis, as illustrated by the presence of dermal collagen cauliflowers. Determination of the order of intron removal and computational analysis showed that simultaneous skipping of exons 6 and 7 is due to the combined effect of delayed splicing of intron 7, altered pre-mRNA secondary structure, low splice site strength and possibly disturbed binding of splicing factors. CONCLUSIONS/SIGNIFICANCE: We report a novel COL5A1 N-propeptide acceptor-splice site mutation in intron 6, which not only affects splicing of the adjacent exon 7, but also causes a splicing error of the upstream exon 6. Our findings add further insights into the COL5A1 splicing order and show for the first time that a single COL5A1 acceptor-splice site

  12. Fine-Scale Genetic Structure in Finland

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    Sini Kerminen

    2017-10-01

    Full Text Available Coupling dense genotype data with new computational methods offers unprecedented opportunities for individual-level ancestry estimation once geographically precisely defined reference data sets become available. We study such a reference data set for Finland containing 2376 such individuals from the FINRISK Study survey of 1997 both of whose parents were born close to each other. This sampling strategy focuses on the population structure present in Finland before the 1950s. By using the recent haplotype-based methods ChromoPainter (CP and FineSTRUCTURE (FS we reveal a highly geographically clustered genetic structure in Finland and report its connections to the settlement history as well as to the current dialectal regions of the Finnish language. The main genetic division within Finland shows striking concordance with the 1323 borderline of the treaty of Nöteborg. In general, we detect genetic substructure throughout the country, which reflects stronger regional genetic differences in Finland compared to, for example, the UK, which in a similar analysis was dominated by a single unstructured population. We expect that similar population genetic reference data sets will become available for many more populations in the near future with important applications, for example, in forensic genetics and in genetic association studies. With this in mind, we report those extensions of the CP + FS approach that we found most useful in our analyses of the Finnish data.

  13. Host Genetics: Fine-Tuning Innate Signaling

    OpenAIRE

    Fellay, Jacques; Goldstein, David B.

    2007-01-01

    A polymorphism modulating innate immunity signal transduction has recently been shown to influence human susceptibility to many different infections, providing one more indication of the potential of host genetics to reveal physiological pathways and mechanisms that influence resistance to infectious diseases.

  14. Fine-scale genetic characterization of Plasmodium falciparum ...

    Indian Academy of Sciences (India)

    Fine-scale genetic characterization of Plasmodium falciparum chromosome 7 encompassing the antigenic var and the drug-resistant pfcrt genes. RUCHI BAJAJ1, SUJATA MOHANTY2, A. P. DASH1 and APARUP DAS1, ∗. 1Evolutionary Genomics and Bioinformatics Laboratory, National Institute of Malaria Research,.

  15. Clonal growth and fine-scale genetic structure in tanoak (Notholithocarpus densiflorus: Fagaceae)

    Science.gov (United States)

    Richard S. Dodd; Wasima Mayer; Alejandro Nettel; Zara. Afzal-Rafii

    2013-01-01

    The combination of sprouting and reproduction by seed can have important consequences on fine-scale spatial distribution of genetic structure (SGS). SGS is an important consideration for species’ restoration because it determines the minimum distance among seed trees to maximize genetic diversity while not prejudicing locally adapted genotypes. Local environmental...

  16. Fine-scale genetic characterization of Plasmodium falciparum ...

    Indian Academy of Sciences (India)

    The fact that malaria is still an uncontrolled disease is reflected by the genetic organization of the parasite genome. Efforts to curb malaria should begin with proper understanding of the mechanism by which the parasites evade human immune system and evolve resistance to different antimalarial drugs. We have initiated ...

  17. Clonal diversity and fine-scale genetic structure in a high andean treeline population

    Czech Academy of Sciences Publication Activity Database

    Peng, Y.; Macek, P.; Macková, Jana; Romoleroux, K.; Hensen, I.

    2015-01-01

    Roč. 47, č. 1 (2015), s. 59-65 ISSN 0006-3606 Grant - others:GA AV ČR(CZ) IAA601110702; GA MŠk(CZ) LM2010009 Program:IA Institutional support: RVO:60077344 Keywords : AFLP * clonal diversity * clonal propagation * fine-scale genetic structure * Polylepis reticulata * treeline Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.944, year: 2015

  18. Effect of aging and genetic variations on decision making, fine motor and cognitive skills

    OpenAIRE

    Bogaers, Lise

    2011-01-01

    Aging is associated with a decline in cognition and motor function. Several SNPs have been linked to neural and cognitive variation in healthy adults. Moreover, it is suggested that the effects of genetic variants are enhanced with human aging. The present study investigates whether aging and genetic variants, in this case the BDNF and COMT Val/Met polymorphisms, influence executive functioning, fine hand motor control and cognitive skills. Fifty-seven healthy volunteers were genotyped fo...

  19. Mapping and fine-mapping of genetic factors affecting bovine milk composition

    NARCIS (Netherlands)

    Duchemin, S.I.

    2016-01-01

    Duchemin, S.I. (2016). Mapping and fine-mapping of genetic factors affecting bovine milk composition. Joint PhD thesis, between Swedish University of Agricultural Sciences, Sweden and Wageningen University, the Netherlands Bovine milk is an important source of nutrients in Western diets. Unraveling

  20. Mapping and fine-mapping of genetic factors affecting bovine milk composition

    NARCIS (Netherlands)

    Duchemin, S.I.

    2016-01-01

    Duchemin, S.I. (2016). Mapping and fine-mapping of genetic factors affecting bovine milk composition. Joint PhD thesis, between Swedish University of Agricultural Sciences, Sweden and Wageningen University, the Netherlands

    Bovine milk is an important source of nutrients in Western diets.

  1. Fine mapping in the MHC region accounts for 18% additional genetic risk for celiac disease

    NARCIS (Netherlands)

    Gutierrez-Achury, Javier; Zhernakova, Alexandra; Pulit, Sara L.; Trynka, Gosia; Hunt, Karen A.; Romanos, Jihane; Raychaudhuri, Soumya; van Heel, David A.; Wijmenga, Cisca; de Balcker, Paul I. W.

    Although dietary gluten is the trigger for celiac disease, risk is strongly influenced by genetic variation in the major histocompatibility complex (MHC) region. We fine mapped the MHC association signal to identify additional risk factors independent of the HLA-DQA1 and HLA-DQB1 alleles and

  2. Fine-scale genetic response to landscape change in a gliding mammal.

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    Ross L Goldingay

    Full Text Available Understanding how populations respond to habitat loss is central to conserving biodiversity. Population genetic approaches enable the identification of the symptoms of population disruption in advance of population collapse. However, the spatio-temporal scales at which population disruption occurs are still too poorly known to effectively conserve biodiversity in the face of human-induced landscape change. We employed microsatellite analysis to examine genetic structure and diversity over small spatial (mostly 1-50 km and temporal scales (20-50 years in the squirrel glider (Petaurus norfolcensis, a gliding mammal that is commonly subjected to a loss of habitat connectivity. We identified genetically differentiated local populations over distances as little as 3 km and within 30 years of landscape change. Genetically isolated local populations experienced the loss of genetic diversity, and significantly increased mean relatedness, which suggests increased inbreeding. Where tree cover remained, genetic differentiation was less evident. This pattern was repeated in two landscapes located 750 km apart. These results lend support to other recent studies that suggest the loss of habitat connectivity can produce fine-scale population genetic change in a range of taxa. This gives rise to the prediction that many other vertebrates will experience similar genetic changes. Our results suggest the future collapse of local populations of this gliding mammal is likely unless habitat connectivity is maintained or restored. Landscape management must occur on a fine-scale to avert the erosion of biodiversity.

  3. Fine mapping in the MHC region accounts for 18% additional genetic risk for celiac disease.

    Science.gov (United States)

    Gutierrez-Achury, Javier; Zhernakova, Alexandra; Pulit, Sara L; Trynka, Gosia; Hunt, Karen A; Romanos, Jihane; Raychaudhuri, Soumya; van Heel, David A; Wijmenga, Cisca; de Bakker, Paul I W

    2015-06-01

    Although dietary gluten is the trigger for celiac disease, risk is strongly influenced by genetic variation in the major histocompatibility complex (MHC) region. We fine mapped the MHC association signal to identify additional risk factors independent of the HLA-DQA1 and HLA-DQB1 alleles and observed five new associations that account for 18% of the genetic risk. Taking these new loci together with the 57 known non-MHC loci, genetic variation can now explain up to 48% of celiac disease heritability.

  4. Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

    DEFF Research Database (Denmark)

    Milano, I.; Babbucci, M.; Cariani, A.

    2014-01-01

    even when neutral markers provide genetic homogeneity across populations. Here, 381 SNPs located in transcribed regions were used to assess largeand fine-scale population structure in the European hake (Merluccius merluccius), a widely distributed demersal species of high priority for the European...... fishery. Analysis of 850 individuals from 19 locations across the entire distribution range showed evidence for several outlier loci, with significantly higher resolving power. While 299 putatively neutral SNPs confirmed the genetic break between basins (FCT = 0.016) and weak differentiation within basins......, outlier loci revealed a dramatic divergence between Atlantic and Mediterranean populations (FCT range 0.275–0.705) and fine-scale significant population structure. Outlier loci separated North Sea and Northern Portugal populations from all other Atlantic samples and revealed a strong differentiation among...

  5. Three-dimensional fine-scale genetic structure of the neotropical epiphytic orchid, Laelia rubescens.

    Science.gov (United States)

    Trapnell, Dorset W; Hamrick, J L; Nason, John D

    2004-05-01

    Epiphytic plants occupy three-dimensional space, which allows more individuals to be closely clustered spatially than is possible for populations occupying two dimensions. The unique characteristics of epiphytes can act in concert to influence the fine-scale genetic structure of their populations which can, in turn, influence mating patterns and other population phenomena. Three large populations of Laelia rubescens (Orchidaceae) in the Costa Rican seasonal dry forest were sampled at two levels of intensity to determine: (i) whether individual clusters contain more than one genotype, and (ii) the spatial distribution and fine-scale genetic structure of genotypes within populations. Samples were assayed for their multilocus allozyme genotypes and spatial autocorrelation analyses were performed. High levels of genetic diversity, high genotypic diversity and low among-population variation were found. In the larger clusters, multiple genets per cluster were common with discrete clusters containing up to nine genotypes. Spatial autocorrelation analyses indicated significant positive genetic structure at distances of

  6. Fine-scale population genetic structure in a fission-fusion society.

    Science.gov (United States)

    Archie, Elizabeth A; Maldonado, Jésus E; Hollister-Smith, Julie A; Poole, Joyce H; Moss, Cynthia J; Fleischer, Robert C; Alberts, Susan C

    2008-06-01

    Nonrandom patterns of mating and dispersal create fine-scale genetic structure in natural populations - especially of social mammals - with important evolutionary and conservation genetic consequences. Such structure is well-characterized for typical mammalian societies; that is, societies where social group composition is stable, dispersal is male-biased, and males form permanent breeding associations in just one or a few social groups over the course of their lives. However, genetic structure is not well understood for social mammals that differ from this pattern, including elephants. In elephant societies, social groups fission and fuse, and males never form permanent breeding associations with female groups. Here, we combine 33 years of behavioural observations with genetic information for 545 African elephants (Loxodonta africana), to investigate how mating and dispersal behaviours structure genetic variation between social groups and across age classes. We found that, like most social mammals, female matrilocality in elephants creates co-ancestry within core social groups and significant genetic differentiation between groups (Phi(ST) = 0.058). However, unlike typical social mammals, male elephants do not bias reproduction towards a limited subset of social groups, and instead breed randomly across the population. As a result, reproductively dominant males mediate gene flow between core groups, which creates cohorts of similar-aged paternal relatives across the population. Because poaching tends to eliminate the oldest elephants from populations, illegal hunting and poaching are likely to erode fine-scale genetic structure. We discuss our results and their evolutionary and conservation genetic implications in the context of other social mammals.

  7. Mendelian randomization with fine-mapped genetic data: Choosing from large numbers of correlated instrumental variables.

    Science.gov (United States)

    Burgess, Stephen; Zuber, Verena; Valdes-Marquez, Elsa; Sun, Benjamin B; Hopewell, Jemma C

    2017-12-01

    Mendelian randomization uses genetic variants to make causal inferences about the effect of a risk factor on an outcome. With fine-mapped genetic data, there may be hundreds of genetic variants in a single gene region any of which could be used to assess this causal relationship. However, using too many genetic variants in the analysis can lead to spurious estimates and inflated Type 1 error rates. But if only a few genetic variants are used, then the majority of the data is ignored and estimates are highly sensitive to the particular choice of variants. We propose an approach based on summarized data only (genetic association and correlation estimates) that uses principal components analysis to form instruments. This approach has desirable theoretical properties: it takes the totality of data into account and does not suffer from numerical instabilities. It also has good properties in simulation studies: it is not particularly sensitive to varying the genetic variants included in the analysis or the genetic correlation matrix, and it does not have greatly inflated Type 1 error rates. Overall, the method gives estimates that are less precise than those from variable selection approaches (such as using a conditional analysis or pruning approach to select variants), but are more robust to seemingly arbitrary choices in the variable selection step. Methods are illustrated by an example using genetic associations with testosterone for 320 genetic variants to assess the effect of sex hormone related pathways on coronary artery disease risk, in which variable selection approaches give inconsistent inferences. © 2017 The Authors Genetic Epidemiology Published by Wiley Periodicals, Inc.

  8. Lack of sex-biased dispersal promotes fine-scale genetic structure in alpine ungulates

    Science.gov (United States)

    Roffler, Gretchen H.; Talbot, Sandra L.; Luikart, Gordon; Sage, George K.; Pilgrim, Kristy L.; Adams, Layne G.; Schwartz, Michael K.

    2014-01-01

    Identifying patterns of fine-scale genetic structure in natural populations can advance understanding of critical ecological processes such as dispersal and gene flow across heterogeneous landscapes. Alpine ungulates generally exhibit high levels of genetic structure due to female philopatry and patchy configuration of mountain habitats. We assessed the spatial scale of genetic structure and the amount of gene flow in 301 Dall’s sheep (Ovis dalli dalli) at the landscape level using 15 nuclear microsatellites and 473 base pairs of the mitochondrial (mtDNA) control region. Dall’s sheep exhibited significant genetic structure within contiguous mountain ranges, but mtDNA structure occurred at a broader geographic scale than nuclear DNA within the study area, and mtDNA structure for other North American mountain sheep populations. No evidence of male-mediated gene flow or greater philopatry of females was observed; there was little difference between markers with different modes of inheritance (pairwise nuclear DNA F ST = 0.004–0.325; mtDNA F ST = 0.009–0.544), and males were no more likely than females to be recent immigrants. Historical patterns based on mtDNA indicate separate northern and southern lineages and a pattern of expansion following regional glacial retreat. Boundaries of genetic clusters aligned geographically with prominent mountain ranges, icefields, and major river valleys based on Bayesian and hierarchical modeling of microsatellite and mtDNA data. Our results suggest that fine-scale genetic structure in Dall’s sheep is influenced by limited dispersal, and structure may be weaker in populations occurring near ancestral levels of density and distribution in continuous habitats compared to other alpine ungulates that have experienced declines and marked habitat fragmentation.

  9. Limited Dispersal and Significant Fine - Scale Genetic Structure in a Tropical Montane Parrot Species.

    Directory of Open Access Journals (Sweden)

    Nadine Klauke

    Full Text Available Tropical montane ecosystems are biodiversity hotspots harbouring many endemics that are confined to specific habitat types within narrow altitudinal ranges. While deforestation put these ecosystems under threat, we still lack knowledge about how heterogeneous environments like the montane tropics promote population connectivity and persistence. We investigated the fine-scale genetic structure of the two largest subpopulations of the endangered El Oro parakeet (Pyrrhura orcesi endemic to the Ecuadorian Andes. Specifically, we assessed the genetic divergence between three sites separated by small geographic distances but characterized by a heterogeneous habitat structure. Although geographical distances between sites are small (3-17 km, we found genetic differentiation between all sites. Even though dispersal capacity is generally high in parrots, our findings indicate that dispersal is limited even on this small geographic scale. Individual genotype assignment revealed similar genetic divergence across a valley (~ 3 km distance compared to a continuous mountain range (~ 13 km distance. Our findings suggest that geographic barriers promote genetic divergence even on small spatial scales in this endangered endemic species. These results may have important implications for many other threatened and endemic species, particularly given the upslope shift of species predicted from climate change.

  10. Cultural transmission of tool use combined with habitat specializations leads to fine-scale genetic structure in bottlenose dolphins

    NARCIS (Netherlands)

    Kopps, Anna M.; Ackermann, Corinne Y.; Sherwin, William B.; Allen, Simon J.; Bejder, Lars; Kruetzen, Michael

    2014-01-01

    Socially learned behaviours leading to genetic population structure have rarely been described outside humans. Here, we provide evidence of fine-scale genetic structure that has probably arisen based on socially transmitted behaviours in bottlenose dolphins (Tursiops sp.) in western Shark Bay,

  11. Fine-Mapping of Common Genetic Variants Associated with Colorectal Tumor Risk Identified Potential Functional Variants.

    Directory of Open Access Journals (Sweden)

    Mengmeng Du

    Full Text Available Genome-wide association studies (GWAS have identified many common single nucleotide polymorphisms (SNPs associated with colorectal cancer risk. These SNPs may tag correlated variants with biological importance. Fine-mapping around GWAS loci can facilitate detection of functional candidates and additional independent risk variants. We analyzed 11,900 cases and 14,311 controls in the Genetics and Epidemiology of Colorectal Cancer Consortium and the Colon Cancer Family Registry. To fine-map genomic regions containing all known common risk variants, we imputed high-density genetic data from the 1000 Genomes Project. We tested single-variant associations with colorectal tumor risk for all variants spanning genomic regions 250-kb upstream or downstream of 31 GWAS-identified SNPs (index SNPs. We queried the University of California, Santa Cruz Genome Browser to examine evidence for biological function. Index SNPs did not show the strongest association signals with colorectal tumor risk in their respective genomic regions. Bioinformatics analysis of SNPs showing smaller P-values in each region revealed 21 functional candidates in 12 loci (5q31.1, 8q24, 11q13.4, 11q23, 12p13.32, 12q24.21, 14q22.2, 15q13, 18q21, 19q13.1, 20p12.3, and 20q13.33. We did not observe evidence of additional independent association signals in GWAS-identified regions. Our results support the utility of integrating data from comprehensive fine-mapping with expanding publicly available genomic databases to help clarify GWAS associations and identify functional candidates that warrant more onerous laboratory follow-up. Such efforts may aid the eventual discovery of disease-causing variant(s.

  12. Fine-scale genetic structure of Triatoma infestans in the Argentine Chaco.

    Science.gov (United States)

    Piccinali, Romina Valeria; Gürtler, Ricardo Esteban

    2015-08-01

    The patterns of genetic structure in natural populations provide essential information for the improvement of pest management strategies including those targeting arthropod vectors of human diseases. We analyzed the patterns of fine-scale genetic structure in Triatoma infestans in a well-defined rural area close to Pampa del Indio, in the Argentine Arid-Humid Chaco transition, where a longitudinal study on house infestation and wing geometric morphometry is being conducted since 2007. A total of 228 insects collected in 16 domestic and peridomestic sites from two rural communities was genotyped for 10 microsatellite loci and analyzed. We did not find departures from Hardy-Weinberg expectations in collection sites, with three exceptions probably due to null alleles and substructuring. Domestic sites were more variable than peridomestic sites suggesting the presence of older bug populations in domestic sites or higher effective population sizes. Significant genetic structure was detected using F-statistics, a discriminant analysis of principal components and Bayesian clustering algorithms in an area of only 6.32 km(2). Microsatellite markers detected population structuring at a finer geographic scale (180-6300 m) than a previous study based on wing geometric morphometry (>4000 m). The spatial distribution of genetic variability was more properly explained by a hierarchical island than by an isolation-by-distance model. This study illustrates that, despite more than a decade without vector control interventions enhancing differentiation, genetic structure can be detected in T. infestans populations, particularly applying spatial information. This supports the potential of genetic studies to provide key information for hypothesis testing of the origins of house reinfestation. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Environmental effects on fine-scale spatial genetic structure in four Alpine keystone forest tree species.

    Science.gov (United States)

    Mosca, Elena; Di Pierro, Erica A; Budde, Katharina B; Neale, David B; González-Martínez, Santiago C

    2018-02-01

    Genetic responses to environmental changes take place at different spatial scales. While the effect of environment on the distribution of species' genetic diversity at large geographical scales has been the focus of several recent studies, its potential effects on genetic structure at local scales are understudied. Environmental effects on fine-scale spatial genetic structure (FSGS) were investigated in four Alpine conifer species (five to eight populations per species) from the eastern Italian Alps. Significant FSGS was found for 11 of 25 populations. Interestingly, we found no significant differences in FSGS across species but great variation among populations within species, highlighting the importance of local environmental factors. Interannual variability in spring temperature had a small but significant effect on FSGS of Larix decidua, probably related to species-specific life history traits. For Abies alba, Picea abies and Pinus cembra, linear models identified spring precipitation as a potentially relevant climate factor associated with differences in FSGS across populations; however, models had low explanatory power and were strongly influenced by a P. cembra outlier population from a very dry site. Overall, the direction of the identified effects is according to expectations, with drier and more variable environments increasing FSGS. Underlying mechanisms may include climate-related changes in the variance of reproductive success and/or environmental selection of specific families. This study provides new insights on potential changes in local genetic structure of four Alpine conifers in the face of environmental changes, suggesting that new climates, through altering FSGS, may also have relevant impacts on plant microevolution. © 2017 John Wiley & Sons Ltd.

  14. Are patterns of fine-scale spatial genetic structure consistent between sites within tropical tree species?

    Science.gov (United States)

    Smith, James R; Ghazoul, Jaboury; Burslem, David F R P; Itoh, Akira; Khoo, Eyen; Lee, Soon Leong; Maycock, Colin R; Nanami, Satoshi; Ng, Kevin Kit Siong; Kettle, Chris J

    2018-01-01

    Documenting the scale and intensity of fine-scale spatial genetic structure (FSGS), and the processes that shape it, is relevant to the sustainable management of genetic resources in timber tree species, particularly where logging or fragmentation might disrupt gene flow. In this study we assessed patterns of FSGS in three species of Dipterocarpaceae (Parashorea tomentella, Shorea leprosula and Shorea parvifolia) across four different tropical rain forests in Malaysia using nuclear microsatellite markers. Topographic heterogeneity varied across the sites. We hypothesised that forests with high topographic heterogeneity would display increased FSGS among the adult populations driven by habitat associations. This hypothesis was not supported for S. leprosula and S. parvifolia which displayed little variation in the intensity and scale of FSGS between sites despite substantial variation in topographic heterogeneity. Conversely, the intensity of FSGS for P. tomentella was greater at a more topographically heterogeneous than a homogeneous site, and a significant difference in the overall pattern of FSGS was detected between sites for this species. These results suggest that local patterns of FSGS may in some species be shaped by habitat heterogeneity in addition to limited gene flow by pollen and seed dispersal. Site factors can therefore contribute to the development of FSGS. Confirming consistency in species' FSGS amongst sites is an important step in managing timber tree genetic diversity as it provides confidence that species specific management recommendations based on species reproductive traits can be applied across a species' range. Forest managers should take into account the interaction between reproductive traits and site characteristics, its consequences for maintaining forest genetic resources and how this might influence natural regeneration across species if management is to be sustainable.

  15. Improving Genetic Algorithm with Fine-Tuned Crossover and Scaled Architecture

    Directory of Open Access Journals (Sweden)

    Ajay Shrestha

    2016-01-01

    Full Text Available Genetic Algorithm (GA is a metaheuristic used in solving combinatorial optimization problems. Inspired by evolutionary biology, GA uses selection, crossover, and mutation operators to efficiently traverse the solution search space. This paper proposes nature inspired fine-tuning to the crossover operator using the untapped idea of Mitochondrial DNA (mtDNA. mtDNA is a small subset of the overall DNA. It differentiates itself by inheriting entirely from the female, while the rest of the DNA is inherited equally from both parents. This unique characteristic of mtDNA can be an effective mechanism to identify members with similar genes and restrict crossover between them. It can reduce the rate of dilution of diversity and result in delayed convergence. In addition, we scale the well-known Island Model, where instances of GA are run independently and population members exchanged periodically, to a Continental Model. In this model, multiple web services are executed with each web service running an island model. We applied the concept of mtDNA in solving Traveling Salesman Problem and to train Neural Network for function approximation. Our implementation tests show that leveraging these new concepts of mtDNA and Continental Model results in relative improvement of the optimization quality of GA.

  16. Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability.

    Science.gov (United States)

    Molinier, Virginie; Murat, Claude; Frochot, Henri; Wipf, Daniel; Splivallo, Richard

    2015-08-01

    Truffles are symbiotic fungi in high demand by food connoisseurs. Improving yield and product quality requires a better understanding of truffle genetics and aroma biosynthesis. One aim here was to investigate the diversity and fine-scale spatial genetic structure of the Burgundy truffle Tuber aestivum. The second aim was to assess how genetic structuring along with fruiting body maturation and geographical origin influenced single constituents of truffle aroma. A total of 39 Burgundy truffles collected in two orchards were characterized in terms of aroma profile (SPME-GC/MS) and genotype (microsatellites). A moderate genetic differentiation was observed between the populations of the two orchards. An important seasonal and spatial genetic structuring was detected. Within one orchard, individuals belonging to the same genet were generally collected during a single season and in the close vicinity from each other. Maximum genet size nevertheless ranged from 46 to 92 m. Geographical origin or maturity only had minor effects on aroma profiles but genetic structuring, specifically clonal identity, had a pronounced influence on the concentrations of C8 - and C4 -VOCs. Our results highlight a high seasonal genetic turnover and indicate that the aroma of Burgundy truffle is influenced by the identity of single clones/genets. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

  17. Genetic insights into Graminella nigrifrons Competence for maize fine streak virus infection and transmission.

    Directory of Open Access Journals (Sweden)

    Bryan J Cassone

    Full Text Available Most plant-infecting rhabdoviruses are transmitted by one or a few closely related insect species. Additionally, intraspecific differences in transmission efficacy often exist among races/biotypes within vector species and among strains within a virus species. The black-faced leafhopper, Graminella nigrifrons, is the only known vector of the persistent propagative rhabdovirus Maize fine streak virus (MFSV. Only a small percentage of leafhoppers are capable of transmitting the virus, although the mechanisms underlying vector competence are not well understood.RNA-Seq was carried out to explore transcript expression changes and sequence variation in G. nigrifrons and MFSV that may be associated with the ability of the vector to acquire and transmit the virus. RT-qPCR assays were used to validate differential transcript accumulation.Feeding on MFSV-infected maize elicited a considerable transcriptional response in G. nigrifrons, with increased expression of cytoskeleton organization and immunity transcripts in infected leafhoppers. Differences between leafhoppers capable of transmitting MFSV, relative to non-transmitting but infected leafhoppers were more limited, which may reflect difficulties discerning between the two groups and/or the likelihood that the transmitter phenotype results from one or a few genetic differences. The ability of infected leafhoppers to transmit MFSV did not appear associated with virus transcript accumulation in the infected leafhoppers or sequence polymorphisms in the viral genome. However, the non-structural MFSV 3 gene was expressed at unexpectedly high levels in infected leafhoppers, suggesting it plays an active role in the infection of the insect host. The results of this study begin to define the functional roles of specific G. nigrifrons and MFSV genes in the viral transmission process.

  18. Genetic insights into Graminella nigrifrons Competence for maize fine streak virus infection and transmission.

    Science.gov (United States)

    Cassone, Bryan J; Cisneros Carter, Fiorella M; Michel, Andrew P; Stewart, Lucy R; Redinbaugh, Margaret G

    2014-01-01

    Most plant-infecting rhabdoviruses are transmitted by one or a few closely related insect species. Additionally, intraspecific differences in transmission efficacy often exist among races/biotypes within vector species and among strains within a virus species. The black-faced leafhopper, Graminella nigrifrons, is the only known vector of the persistent propagative rhabdovirus Maize fine streak virus (MFSV). Only a small percentage of leafhoppers are capable of transmitting the virus, although the mechanisms underlying vector competence are not well understood. RNA-Seq was carried out to explore transcript expression changes and sequence variation in G. nigrifrons and MFSV that may be associated with the ability of the vector to acquire and transmit the virus. RT-qPCR assays were used to validate differential transcript accumulation. Feeding on MFSV-infected maize elicited a considerable transcriptional response in G. nigrifrons, with increased expression of cytoskeleton organization and immunity transcripts in infected leafhoppers. Differences between leafhoppers capable of transmitting MFSV, relative to non-transmitting but infected leafhoppers were more limited, which may reflect difficulties discerning between the two groups and/or the likelihood that the transmitter phenotype results from one or a few genetic differences. The ability of infected leafhoppers to transmit MFSV did not appear associated with virus transcript accumulation in the infected leafhoppers or sequence polymorphisms in the viral genome. However, the non-structural MFSV 3 gene was expressed at unexpectedly high levels in infected leafhoppers, suggesting it plays an active role in the infection of the insect host. The results of this study begin to define the functional roles of specific G. nigrifrons and MFSV genes in the viral transmission process.

  19. Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks

    Science.gov (United States)

    Kanno, Yoichiro; Vokoun, Jason C.; Letcher, Benjamin H.

    2011-01-01

    Linear and heterogeneous habitat makes headwater stream networks an ideal ecosystem in which to test the influence of environmental factors on spatial genetic patterns of obligatory aquatic species. We investigated fine-scale population structure and influence of stream habitat on individual-level genetic differentiation in brook trout (Salvelinus fontinalis) by genotyping eight microsatellite loci in 740 individuals in two headwater channel networks (7.7 and 4.4 km) in Connecticut, USA. A weak but statistically significant isolation-by-distance pattern was common in both sites. In the field, many tagged individuals were recaptured in the same 50-m reaches within a single field season (summer to fall). One study site was characterized with a hierarchical population structure, where seasonal barriers (natural falls of 1.5–2.5 m in height during summer base-flow condition) greatly reduced gene flow and perceptible spatial patterns emerged because of the presence of tributaries, each with a group of genetically distinguishable individuals. Genetic differentiation increased when pairs of individuals were separated by high stream gradient (steep channel slope) or warm stream temperature in this site, although the evidence of their influence was equivocal. In a second site, evidence for genetic clusters was weak at best, but genetic differentiation between individuals was positively correlated with number of tributary confluences. We concluded that the population-level movement of brook trout was limited in the study headwater stream networks, resulting in the fine-scale population structure (genetic clusters and clines) even at distances of a few kilometres, and gene flow was mitigated by ‘riverscape’ variables, particularly by physical barriers, waterway distance (i.e. isolation-by-distance) and the presence of tributaries.

  20. Fine-scale genetic structure and cryptic associations reveal evidence of kin-based sociality in the African forest elephant.

    Directory of Open Access Journals (Sweden)

    Stephanie G Schuttler

    Full Text Available Spatial patterns of relatedness within animal populations are important in the evolution of mating and social systems, and have the potential to reveal information on species that are difficult to observe in the wild. This study examines the fine-scale genetic structure and connectivity of groups within African forest elephants, Loxodonta cyclotis, which are often difficult to observe due to forest habitat. We tested the hypothesis that genetic similarity will decline with increasing geographic distance, as we expect kin to be in closer proximity, using spatial autocorrelation analyses and Tau K(r tests. Associations between individuals were investigated through a non-invasive genetic capture-recapture approach using network models, and were predicted to be more extensive than the small groups found in observational studies, similar to fission-fusion sociality found in African savanna (Loxodonta africana and Asian (Elephas maximus species. Dung samples were collected in Lopé National Park, Gabon in 2008 and 2010 and genotyped at 10 microsatellite loci, genetically sexed, and sequenced at the mitochondrial DNA control region. We conducted analyses on samples collected at three different temporal scales: a day, within six-day sampling sessions, and within each year. Spatial autocorrelation and Tau K(r tests revealed genetic structure, but results were weak and inconsistent between sampling sessions. Positive spatial autocorrelation was found in distance classes of 0-5 km, and was strongest for the single day session. Despite weak genetic structure, individuals within groups were significantly more related to each other than to individuals between groups. Social networks revealed some components to have large, extensive groups of up to 22 individuals, and most groups were composed of individuals of the same matriline. Although fine-scale population genetic structure was weak, forest elephants are typically found in groups consisting of kin and

  1. Fine-mapping and genetic analysis of the loci affecting hepatic iron overload in mice.

    Directory of Open Access Journals (Sweden)

    Xin Guo

    Full Text Available The liver, as the major organ for iron storage and production of hepcidin, plays pivotal roles in maintaining mammalian iron homeostasis. A previous study showed that Quantitative Trait Loci (QTLs on chromosome 7 (Chr7 and 16 (Chr16 may control hepatic non-heme iron overload in an F2 intercross derived from C57BL/6J (B6 and SWR/J (SWR mice. In this study, we aimed to validate the existence of these loci and identify the genes responsible for the phenotypic variations by generating congenic mice carrying SWR chromosome segments expanding these QTLs (D7Mit68-D7Mit71 and D16Mit125-D16Mit185, respectively. We excluded involvement of Chr7 based on the lack of iron accumulation in congenic mice. In contrast, liver iron accumulation was observed in Chr16 congenic mice. Through use of a series of subcongenic murine lines the interval on Chr16 was further fine-mapped to a 0.8 Mb segment spanning 11 genes. We found that the mRNA expression pattern in the liver remained unchanged for all 11 genes tested. Most importantly, we detected 4 missense mutations in 3 candidate genes including Sidt1 (P172R, Spice1(R708S, Boc (Q1051R and Boc (S450-insertion in B6 allele in the liver of SWR homozygous congenic mice. To further delineate potential modifier gene(s, we reconstituted seven candidate genes, Sidt1, Boc, Zdhhc23, Gramd1c, Atp6v1a, Naa50 and Gtpbp8, in mouse liver through hydrodynamic transfection. However, we were unable to detect significant changes in liver iron levels upon reconstitution of these candidate genes. Taken together, our work provides strong genetic evidence of the existence of iron modifiers on Chr16. Moreover, we were able to delineate the phenotypically responsible region to a 0.8 Mb region containing 11 coding genes, 3 of which harbor missense mutations, using a series of congenic mice.

  2. Fine-scale spatial genetic structure in predominantly selfing plants with limited seed dispersal: A rule or exception?

    Directory of Open Access Journals (Sweden)

    Sergei Volis

    2016-04-01

    Full Text Available Gene flow at a fine scale is still poorly understood despite its recognized importance for plant population demographic and genetic processes. We tested the hypothesis that intensity of gene flow will be lower and strength of spatial genetic structure (SGS will be higher in more peripheral populations because of lower population density. The study was performed on the predominantly selfing Avena sterilis and included: (1 direct measurement of dispersal in a controlled environment; and (2 analyses of SGS in three natural populations, sampled in linear transects at fixed increasing inter-plant distances. We found that in A. sterilis major seed dispersal is by gravity in close (less than 2 m vicinity of the mother plant, with a minor additional effect of wind. Analysis of SGS with six nuclear SSRs revealed a significant autocorrelation for the distance class of 1 m only in the most peripheral desert population, while in the two core populations with Mediterranean conditions, no genetic structure was found. Our results support the hypothesis that intensity of SGS increases from the species core to periphery as a result of decreased within-population gene flow related to low plant density. Our findings also show that predominant self-pollination and highly localized seed dispersal lead to SGS at a very fine scale, but only if plant density is not too high.

  3. Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis.

    Science.gov (United States)

    Stevison, Laurie S; Noor, Mohamed A F

    2010-12-01

    Recombination is fundamental to meiosis in many species and generates variation on which natural selection can act, yet fine-scale linkage maps are cumbersome to construct. We generated a fine-scale map of recombination rates across two major chromosomes in Drosophila persimilis using 181 SNP markers spanning two of five major chromosome arms. Using this map, we report significant fine-scale heterogeneity of local recombination rates. However, we also observed "recombinational neighborhoods," where adjacent intervals had similar recombination rates after excluding regions near the centromere and telomere. We further found significant positive associations of fine-scale recombination rate with repetitive element abundance and a 13-bp sequence motif known to associate with human recombination rates. We noted strong crossover interference extending 5-7 Mb from the initial crossover event. Further, we observed that fine-scale recombination rates in D. persimilis are strongly correlated with those obtained from a comparable study of its sister species, D. pseudoobscura. We documented a significant relationship between recombination rates and intron nucleotide sequence diversity within species, but no relationship between recombination rate and intron divergence between species. These results are consistent with selection models (hitchhiking and background selection) rather than mutagenic recombination models for explaining the relationship of recombination with nucleotide diversity within species. Finally, we found significant correlations between recombination rate and GC content, supporting both GC-biased gene conversion (BGC) models and selection-driven codon bias models. Overall, this genome-enabled map of fine-scale recombination rates allowed us to confirm findings of broader-scale studies and identify multiple novel features that merit further investigation.

  4. Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci

    NARCIS (Netherlands)

    Gaulton, Kyle J.; Ferreira, Teresa; Lee, Yeji; Raimondo, Anne; Mägi, Reedik; Reschen, Michael E.; Mahajan, Anubha; Locke, Adam; Rayner, N. William; Robertson, Neil; Scott, Robert A.; Prokopenko, Inga; Scott, Laura J.; Green, Todd; Sparso, Thomas; Thuillier, Dorothee; Yengo, Loic; Grallert, Harald; Wahl, Simone; Frånberg, Mattias; Strawbridge, Rona J.; Kestler, Hans; Chheda, Himanshu; Eisele, Lewin; Gustafsson, Stefan; Steinthorsdottir, Valgerdur; Thorleifsson, Gudmar; Qi, Lu; Karssen, Lennart C.; van Leeuwen, Elisabeth M.; Willems, Sara M.; Li, Man; Chen, Han; Fuchsberger, Christian; Kwan, Phoenix; Ma, Clement; Linderman, Michael; Lu, Yingchang; Thomsen, Soren K.; Rundle, Jana K.; Beer, Nicola L.; van de Bunt, Martijn; Chalisey, Anil; Kang, Hyun Min; Voight, Benjamin F.; Abecasis, Gonçalo R.; Almgren, Peter; Baldassarre, Damiano; Balkau, Beverley; Benediktsson, Rafn; Blüher, Matthias; Boeing, Heiner; Bonnycastle, Lori L.; Bottinger, Erwin P.; Burtt, Noël P.; Carey, Jason; Charpentier, Guillaume; Chines, Peter S.; Cornelis, Marilyn C.; Couper, David J.; Crenshaw, Andrew T.; van Dam, Rob M.; Doney, Alex S. F.; Dorkhan, Mozhgan; Edkins, Sarah; Eriksson, Johan G.; Esko, Tonu; Eury, Elodie; Fadista, João; Flannick, Jason; Fontanillas, Pierre; Fox, Caroline; Franks, Paul W.; Gertow, Karl; Gieger, Christian; Gigante, Bruna; Gottesman, Omri; Grant, George B.; Grarup, Niels; Groves, Christopher J.; Hassinen, Maija; Have, Christian T.; Herder, Christian; Holmen, Oddgeir L.; Hreidarsson, Astradur B.; Humphries, Steve E.; Hunter, David J.; Jackson, Anne U.; Jonsson, Anna; Jørgensen, Marit E.; Jørgensen, Torben; Kao, Wen-Hong L.; Kerrison, Nicola D.; Kinnunen, Leena; Klopp, Norman; Kong, Augustine; Kovacs, Peter; Kraft, Peter; Kravic, Jasmina; Langford, Cordelia; Leander, Karin; Liang, Liming; Lichtner, Peter; Lindgren, Cecilia M.; Lindholm, Eero; Linneberg, Allan; Liu, Ching-Ti; Lobbens, Stéphane; Luan, Jian'an; Lyssenko, Valeriya; Männistö, Satu; McLeod, Olga; Meyer, Julia; Mihailov, Evelin; Mirza, Ghazala; Mühleisen, Thomas W.; Müller-Nurasyid, Martina; Navarro, Carmen; Nöthen, Markus M.; Oskolkov, Nikolay N.; Owen, Katharine R.; Palli, Domenico; Pechlivanis, Sonali; Peltonen, Leena; Perry, John R. B.; Platou, Carl G. P.; Roden, Michael; Ruderfer, Douglas; Rybin, Denis; van der Schouw, Yvonne T.; Sennblad, Bengt; Sigurðsson, Gunnar; Stančáková, Alena; Steinbach, Gerald; Storm, Petter; Strauch, Konstantin; Stringham, Heather M.; Sun, Qi; Thorand, Barbara; Tikkanen, Emmi; Tonjes, Anke; Trakalo, Joseph; Tremoli, Elena; Tuomi, Tiinamaija; Wennauer, Roman; Wiltshire, Steven; Wood, Andrew R.; Zeggini, Eleftheria; Dunham, Ian; Birney, Ewan; Pasquali, Lorenzo; Ferrer, Jorge; Loos, Ruth J. F.; Dupuis, Josée; Florez, Jose C.; Boerwinkle, Eric; Pankow, James S.; van Duijn, Cornelia; Sijbrands, Eric; Meigs, James B.; Hu, Frank B.; Thorsteinsdottir, Unnur; Stefansson, Kari; Lakka, Timo A.; Rauramaa, Rainer; Stumvoll, Michael; Pedersen, Nancy L.; Lind, Lars; Keinanen-Kiukaanniemi, Sirkka M.; Korpi-Hyövälti, Eeva; Saaristo, Timo E.; Saltevo, Juha; Kuusisto, Johanna; Laakso, Markku; Metspalu, Andres; Erbel, Raimund; Jöcke, Karl-Heinz; Moebus, Susanne; Ripatti, Samuli; Salomaa, Veikko; Ingelsson, Erik; Boehm, Bernhard O.; Bergman, Richard N.; Collins, Francis S.; Mohlke, Karen L.; Koistinen, Heikki; Tuomilehto, Jaakko; Hveem, Kristian; Njølstad, Inger; Deloukas, Panagiotis; Donnelly, Peter J.; Frayling, Timothy M.; Hattersley, Andrew T.; de Faire, Ulf; Hamsten, Anders; Illig, Thomas; Peters, Annette; Cauchi, Stephane; Sladek, Rob; Froguel, Philippe; Hansen, Torben; Pedersen, Oluf; Morris, Andrew D.; Palmer, Collin N. A.; Kathiresan, Sekar; Melander, Olle; Nilsson, Peter M.; Groop, Leif C.; Barroso, Inês; Langenberg, Claudia; Wareham, Nicholas J.; O'Callaghan, Christopher A.; Gloyn, Anna L.; Altshuler, David; Boehnke, Michael; Teslovich, Tanya M.; McCarthy, Mark I.; Morris, Andrew P.; Abecasis, Goncalo R.; Atalay, Mustafa; Beilby, John; Borringer, Erwin P.; Campbell, Harry; Danesh, John; Dedoussis, George; Dimas, Antigone S.; Dina, Christian; Emilsson, Valur; Forouhi, Nita G.; Hayward, Caroline; Hofman, Albert; Horikoshi, Momoko; Hovingh, Kees; Hui, Jennie; Hunt, Sarah E.; James, Alan; Jockel, Karl-Heinz; Johnson, Andrew D.; Kanoni, Stavroula; Kao, Wen Hong L.; Khan, Hassan; Khaw, Kay-Tee; Komulainen, Pirjo; Korpi-Hyövӓlti, Eeva; Kumar, Ashish; Lagou, Vasiliki; Musk, Bill; Mӓnnistö, Satu; Navarro, Pau; Potter, Simon; Price, Jackie F.; Rallidis, Loukianos; Rathmann, Wolfgang; Raychaudhuri, Soumya; Rehnberg, Emil; Rossin, Elizabeth J.; Rudan, Igor; Salehen, Danish; Saramies, Jouko; Segre, Ayellet V.; Shah, Sonia; Shuldiner, Alan R.; Silveira, Angela; Sivapalaratnam, Suthesh; Stirrups, Kathleen; Syvanen, Ann-Christine; Trip, Mieke D.; Uitterlinden, Andre G.; Vedantam, Sailaja; Veglia, Fabrizio; Wilsgaard, Tom; Wilson, James F.; Zabaneh, Delilah

    2015-01-01

    We performed fine mapping of 39 established type 2 diabetes (T2D) loci in 27,206 cases and 57,574 controls of European ancestry. We identified 49 distinct association signals at these loci, including five mapping in or near KCNQ1. 'Credible sets' of the variants most likely to drive each distinct

  5. Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci

    NARCIS (Netherlands)

    K. Gaulton (Kyle); T. Ferreira (Teresa); Y. Lee (Yeji); A. Raimondo (Anne); R. Mägi (Reedik); M.E. Reschen (Michael E.); A. Mahajan (Anubha); A. Locke (Adam); N.W. Rayner (Nigel William); N.R. Robertson (Neil); R.A. Scott (Robert); I. Prokopenko (Inga); L.J. Scott (Laura); T. Green (Todd); T. Sparsø (Thomas); D. Thuillier (Dorothee); L. Yengo (Loic); H. Grallert (Harald); S. Wahl (Simone); M. Frånberg (Mattias); R.J. Strawbridge (Rona); H. Kestler (Hans); H. Chheda (Himanshu); L. Eisele (Lewin); S. Gustafsson (Stefan); V. Steinthorsdottir (Valgerdur); G. Thorleifsson (Gudmar); L. Qi (Lu); L.C. Karssen (Lennart); E.M. van Leeuwen (Elisa); S.M. Willems (Sara); M. Li (Man); H. Chen (Han); C. Fuchsberger (Christian); P. Kwan (Phoenix); C. Ma (Clement); M. Linderman (Michael); Y. Lu (Yingchang); S.K. Thomsen (Soren K.); J.K. Rundle (Jana K.); N.L. Beer (Nicola L.); M. van de Bunt (Martijn); A. Chalisey (Anil); H.M. Kang (Hyun Min); B.F. Voight (Benjamin); G.R. Abecasis (Gonçalo); P. Almgren (Peter); D. Baldassarre (Damiano); B. Balkau (Beverley); R. Benediktsson (Rafn); M. Blüher (Matthias); H. Boeing (Heiner); L.L. Bonnycastle (Lori); E.P. Bottinger (Erwin P.); N.P. Burtt (Noël); J. Carey (Jason); G. Charpentier (Guillaume); P.S. Chines (Peter); M. Cornelis (Marilyn); D.J. Couper (David J.); A. Crenshaw (Andrew); R.M. van Dam (Rob); A.S.F. Doney (Alex); M. Dorkhan (Mozhgan); T. Edkins (Ted); J.G. Eriksson (Johan G.); T. Esko (Tõnu); E. Eury (Elodie); J. Fadista (João); J. Flannick (Jason); P. Fontanillas (Pierre); C.S. Fox (Caroline); P.W. Franks (Paul W.); K. Gertow (Karl); C. Gieger (Christian); B. Gigante (Bruna); R.F. Gottesman (Rebecca); G.B. Grant (George); N. Grarup (Niels); C.J. Groves (Christopher J.); M. Hassinen (Maija); C.T. Have (Christian T.); C. Herder (Christian); O.L. Holmen (Oddgeir); A.B. Hreidarsson (Astradur); S.E. Humphries (Steve E.); D.J. Hunter (David J.); A.U. Jackson (Anne); A. Jonsson (Anna); M.E. Jørgensen (Marit E.); T. Jørgensen (Torben); W.H.L. Kao (Wen); N.D. Kerrison (Nicola D.); L. Kinnunen (Leena); N. Klopp (Norman); A. Kong (Augustine); P. Kovacs (Peter); P. Kraft (Peter); J. Kravic (Jasmina); C. Langford (Cordelia); K. Leander (Karin); L. Liang (Liming); P. Lichtner (Peter); C.M. Lindgren (Cecilia M.); B. Lindholm (Bengt); A. Linneberg (Allan); C.-T. Liu (Ching-Ti); S. Lobbens (Stéphane); J. Luan (Jian'fan); V. Lyssenko (Valeriya); S. Männistö (Satu); O. McLeod (Olga); J. Meyer (Jobst); E. Mihailov (Evelin); G. Mirza (Ghazala); T.W. Mühleisen (Thomas); M. Müller-Nurasyid (Martina); C. Navarro (Carmen); M.M. Nöthen (Markus); N.N. Oskolkov (Nikolay N.); K.R. Owen (Katharine); D. Palli (Domenico); S. Pechlivanis (Sonali); L. Peltonen (Leena Johanna); J.R.B. Perry (John); C.P. Platou (Carl); M. Roden (Michael); D. Ruderfer (Douglas); D. Rybin (Denis); Y.T. Van Der Schouw (Yvonne T.); B. Sennblad (Bengt); G. Sigurosson (Gunnar); A. Stancáková (Alena); D. Steinbach; P. Storm (Petter); K. Strauch (Konstantin); H.M. Stringham (Heather); Q. Sun; B. Thorand (Barbara); E. Tikkanen (Emmi); A. Tönjes (Anke); J. Trakalo (Joseph); E. Tremoli (Elena); T. Tuomi (Tiinamaija); R. Wennauer (Roman); S. Wiltshire (Steven); A.R. Wood (Andrew); E. Zeggini (Eleftheria); I. Dunham (Ian); E. Birney (Ewan); L. Pasquali (Lorenzo); J. Ferrer (Jorge); R.J.F. Loos (Ruth); J. Dupuis (Josée); J.C. Florez (Jose); E.A. Boerwinkle (Eric); J.S. Pankow (James); C.M. van Duijn (Cornelia); E.J.G. Sijbrands (Eric); J.B. Meigs (James B.); F.B. Hu (Frank B.); U. Thorsteinsdottir (Unnur); J-A. Zwart (John-Anker); T.A. Lakka (Timo); R. Rauramaa (Rainer); M. Stumvoll (Michael); N.L. Pedersen (Nancy L.); L. Lind (Lars); S. Keinanen-Kiukaanniemi (Sirkka); E. Korpi-Hyövälti (Eeva); T. Saaristo (Timo); J. Saltevo (Juha); J. Kuusisto (Johanna); M. Laakso (Markku); A. Metspalu (Andres); R. Erbel (Raimund); K.-H. Jöckel (Karl-Heinz); S. Moebus (Susanne); S. Ripatti (Samuli); V. Salomaa (Veikko); E. Ingelsson (Erik); B.O. Boehm (Bernhard); R.N. Bergman (Richard N.); F.S. Collins (Francis S.); K.L. Mohlke (Karen L.); H. Koistinen (Heikki); J. Tuomilehto (Jaakko); K. Hveem (Kristian); I. Njølstad (Inger); P. Deloukas (Panagiotis); P.J. Donnelly (Peter J.); T.M. Frayling (Timothy); A.T. Hattersley (Andrew); U. de Faire (Ulf); A. Hamsten (Anders); T. Illig (Thomas); A. Peters (Annette); S. Cauchi (Stephane); R. Sladek (Rob); P. Froguel (Philippe); T. Hansen (Torben); O. Pedersen (Oluf); A.D. Morris (Andrew); C.N.A. Palmer (Collin N. A.); S. Kathiresan (Sekar); O. Melander (Olle); P.M. Nilsson (Peter M.); L. Groop (Leif); I. Barroso (Inês); C. Langenberg (Claudia); N.J. Wareham (Nicholas J.); C.A. O'Callaghan (Christopher A.); A.L. Gloyn (Anna); D. Altshuler (David); M. Boehnke (Michael); T.M. Teslovich (Tanya M.); M.I. McCarthy (Mark); A.P. Morris (Andrew)

    2015-01-01

    textabstractWe performed fine mapping of 39 established type 2 diabetes (T2D) loci in 27,206 cases and 57,574 controls of European ancestry. We identified 49 distinct association signals at these loci, including five mapping in or near KCNQ1. 'Credible sets' of the variants most likely to drive each

  6. Fine-scale genetic structure of natural Tuber aestivum sites in southern Germany

    Czech Academy of Sciences Publication Activity Database

    Molinier, V.; Murat, C.; Baltensweiler, A.; Büntgen, Ulf; Martin, F.; Meier, B.; Moser, B.; Sproll, L.; Stobbe, U.; Tegel, W.; Egli, S.; Peter, M.

    2016-01-01

    Roč. 26, č. 8 (2016), s. 895-907 ISSN 0940-6360 Institutional support: RVO:67179843 Keywords : mating-type distribution * vegetative incompatibility * ectomycorrhizal communities * truffle cultivation * population-genetics * genus tuber * Burgundy truffle * Mating-type genes * Population genetics * Propagation strategy * SSR markers Subject RIV: EH - Ecology, Behaviour Impact factor: 3.047, year: 2016

  7. Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci

    DEFF Research Database (Denmark)

    Gaulton, Kyle J; Ferreira, Teresa; Lee, Yeji

    2015-01-01

    We performed fine mapping of 39 established type 2 diabetes (T2D) loci in 27,206 cases and 57,574 controls of European ancestry. We identified 49 distinct association signals at these loci, including five mapping in or near KCNQ1. 'Credible sets' of the variants most likely to drive each distinct...... signal mapped predominantly to noncoding sequence, implying that association with T2D is mediated through gene regulation. Credible set variants were enriched for overlap with FOXA2 chromatin immunoprecipitation binding sites in human islet and liver cells, including at MTNR1B, where fine mapping...... implicated rs10830963 as driving T2D association. We confirmed that the T2D risk allele for this SNP increases FOXA2-bound enhancer activity in islet- and liver-derived cells. We observed allele-specific differences in NEUROD1 binding in islet-derived cells, consistent with evidence that the T2D risk allele...

  8. Mother-offspring distances reflect sex differences in fine-scale genetic structure of eastern grey kangaroos.

    Science.gov (United States)

    King, Wendy J; Garant, Dany; Festa-Bianchet, Marco

    2015-05-01

    Natal dispersal affects life history and population biology and causes gene flow. In mammals, dispersal is usually male-biased so that females tend to be philopatric and surrounded by matrilineal kin, which may lead to preferential associations among female kin. Here we combine genetic analyses and behavioral observations to investigate spatial genetic structure and sex-biased dispersal patterns in a high-density population of mammals showing fission-fusion group dynamics. We studied eastern grey kangaroos (Macropus giganteus) over 2 years at Wilsons Promontory National Park, Australia, and found weak fine-scale genetic structure among adult females in both years but no structure among adult males. Immature male kangaroos moved away from their mothers at 18-25 months of age, while immature females remained near their mothers until older. A higher proportion of male (34%) than female (6%) subadults and young adults were observed to disperse, although median distances of detected dispersals were similar for both sexes. Adult females had overlapping ranges that were far wider than the maximum extent of spatial genetic structure found. Female kangaroos, although weakly philopatric, mostly encounter nonrelatives in fission-fusion groups at high density, and therefore kinship is unlikely to strongly affect sociality.

  9. Fine-scale estimation of carbon monoxide and fine particulate matter concentrations in proximity to a road intersection by using wavelet neural network with genetic algorithm

    Science.gov (United States)

    Wang, Zhanyong; Lu, Feng; He, Hong-di; Lu, Qing-Chang; Wang, Dongsheng; Peng, Zhong-Ren

    2015-03-01

    At road intersections, vehicles frequently stop with idling engines during the red-light period and speed up rapidly in the green-light period, which generates higher velocity fluctuation and thus higher emission rates. Additionally, the frequent changes of wind direction further add the highly variable dispersion of pollutants at the street scale. It is, therefore, very difficult to estimate the distribution of pollutant concentrations using conventional deterministic causal models. For this reason, a hybrid model combining wavelet neural network and genetic algorithm (GA-WNN) is proposed for predicting 5-min series of carbon monoxide (CO) and fine particulate matter (PM2.5) concentrations in proximity to an intersection. The proposed model is examined based on the measured data under two situations. As the measured pollutant concentrations are found to be dependent on the distance to the intersection, the model is evaluated in three locations respectively, i.e. 110 m, 330 m and 500 m. Due to the different variation of pollutant concentrations on varied time, the model is also evaluated in peak and off-peak traffic time periods separately. Additionally, the proposed model, together with the back-propagation neural network (BPNN), is examined with the measured data in these situations. The proposed model is found to perform better in predictability and precision for both CO and PM2.5 than BPNN does, implying that the hybrid model can be an effective tool to improve the accuracy of estimating pollutants' distribution pattern at intersections. The outputs of these findings demonstrate the potential of the proposed model to be applicable to forecast the distribution pattern of air pollution in real-time in proximity to road intersection.

  10. Genetic Etiology of Renal Agenesis: Fine Mapping of Renag1 and Identification of Kit as the Candidate Functional Gene

    Science.gov (United States)

    Samanas, Nyssa Becker; Commers, Tessa W.; Dennison, Kirsten L.; Harenda, Quincy Eckert; Kurz, Scott G.; Lachel, Cynthia M.; Wavrin, Kristen Leland; Bowler, Michael; Nijman, Isaac J.; Guryev, Victor; Cuppen, Edwin; Hubner, Norbert; Sullivan, Ruth; Vezina, Chad M.; Shull, James D.

    2015-01-01

    Congenital anomalies of the kidney and urogenital tract (CAKUT) occur in approximately 0.5% of live births and represent the most frequent cause of end-stage renal disease in neonates and children. The genetic basis of CAKUT is not well defined. To understand more fully the genetic basis of one type of CAKUT, unilateral renal agenesis (URA), we are studying inbred ACI rats, which spontaneously exhibit URA and associated urogenital anomalies at an incidence of approximately 10%. URA is inherited as an incompletely dominant trait with incomplete penetrance in crosses between ACI and Brown Norway (BN) rats and a single responsible genetic locus, designated Renag1, was previously mapped to rat chromosome 14 (RNO14). The goals of this study were to fine map Renag1, identify the causal genetic variant responsible for URA, confirm that the Renag1 variant is the sole determinant of URA in the ACI rat, and define the embryologic basis of URA in this rat model. Data presented herein localize Renag1 to a 379 kilobase (kb) interval that contains a single protein coding gene, Kit (v-kit Hardy-Zukerman 4 feline sarcoma viral oncogene homolog); identify an endogenous retrovirus-derived long terminal repeat located within Kit intron 1 as the probable causal variant; demonstrate aberrant development of the nephric duct in the anticipated number of ACI rat embryos; and demonstrate expression of Kit and Kit ligand (Kitlg) in the nephric duct. Congenic rats that harbor ACI alleles at Renag1 on the BN genetic background exhibit the same spectrum of urogenital anomalies as ACI rats, indicating that Renag1 is necessary and sufficient to elicit URA and associated urogenital anomalies. These data reveal the first genetic link between Kit and URA and illustrate the value of the ACI rat as a model for defining the mechanisms and cell types in which Kit functions during urogenital development. PMID:25693193

  11. Genetic etiology of renal agenesis: fine mapping of Renag1 and identification of Kit as the candidate functional gene.

    Directory of Open Access Journals (Sweden)

    Nyssa Becker Samanas

    Full Text Available Congenital anomalies of the kidney and urogenital tract (CAKUT occur in approximately 0.5% of live births and represent the most frequent cause of end-stage renal disease in neonates and children. The genetic basis of CAKUT is not well defined. To understand more fully the genetic basis of one type of CAKUT, unilateral renal agenesis (URA, we are studying inbred ACI rats, which spontaneously exhibit URA and associated urogenital anomalies at an incidence of approximately 10%. URA is inherited as an incompletely dominant trait with incomplete penetrance in crosses between ACI and Brown Norway (BN rats and a single responsible genetic locus, designated Renag1, was previously mapped to rat chromosome 14 (RNO14. The goals of this study were to fine map Renag1, identify the causal genetic variant responsible for URA, confirm that the Renag1 variant is the sole determinant of URA in the ACI rat, and define the embryologic basis of URA in this rat model. Data presented herein localize Renag1 to a 379 kilobase (kb interval that contains a single protein coding gene, Kit (v-kit Hardy-Zukerman 4 feline sarcoma viral oncogene homolog; identify an endogenous retrovirus-derived long terminal repeat located within Kit intron 1 as the probable causal variant; demonstrate aberrant development of the nephric duct in the anticipated number of ACI rat embryos; and demonstrate expression of Kit and Kit ligand (Kitlg in the nephric duct. Congenic rats that harbor ACI alleles at Renag1 on the BN genetic background exhibit the same spectrum of urogenital anomalies as ACI rats, indicating that Renag1 is necessary and sufficient to elicit URA and associated urogenital anomalies. These data reveal the first genetic link between Kit and URA and illustrate the value of the ACI rat as a model for defining the mechanisms and cell types in which Kit functions during urogenital development.

  12. Fine-scale genetic structure analyses suggest further male than female dispersal in mountain gorillas.

    Science.gov (United States)

    Roy, Justin; Gray, Maryke; Stoinski, Tara; Robbins, Martha M; Vigilant, Linda

    2014-07-07

    Molecular studies in social mammals rarely compare the inferences gained from genetic analyses with field information, especially in the context of dispersal. In this study, we used genetic data to elucidate sex-specific dispersal dynamics in the Virunga Massif mountain gorilla population (Gorilla beringei beringei), a primate species characterized by routine male and female dispersal from stable mixed-sex social groups. Specifically, we conducted spatial genetic structure analyses for each sex and linked our genetically-based observations with some key demographic and behavioural data from this population. To investigate the spatial genetic structure of mountain gorillas, we analysed the genotypes of 193 mature individuals at 11 microsatellite loci by means of isolation-by-distance and spatial autocorrelation analyses. Although not all males and females disperse, female gorillas displayed an isolation-by-distance pattern among groups and a signal of dispersal at short distances from their natal group based on spatial autocorrelation analyses. In contrast, male genotypes were not correlated with spatial distance, thus suggesting a larger mean dispersal distance for males as compared to females. Both within sex and mixed-sex pairs were on average genetically more related within groups than among groups. Our study provides evidence for an intersexual difference in dispersal distance in the mountain gorilla. Overall, it stresses the importance of investigating spatial genetic structure patterns on a sex-specific basis to better understand the dispersal dynamics of the species under investigation. It is currently poorly understood why some male and female gorillas disperse while others remain in the natal group. Our results on average relatedness within and across groups confirm that groups often contain close relatives. While inbreeding avoidance may play a role in driving female dispersal, we note that more detailed dyadic genetic analyses are needed to shed light on

  13. Fine-scale spatial genetic structure of Dalbergia nigra (Fabaceae), a threatened and endemic tree of the Brazilian Atlantic Forest.

    Science.gov (United States)

    de Oliveira Buzatti, Renata Santiago; Ribeiro, Renata Acácio; de Lemos Filho, José Pires; Lovato, Maria Bernadete

    2012-12-01

    The Atlantic Forest is one of the most diverse ecosystems in the world and considered a hotspot of biodiversity conservation. Dalbergia nigra (Fabaceae) is a tree endemic to the Brazilian Atlantic Forest, and has become threatened due to overexploitation of its valuable timber. In the present study, we analyzed the genetic diversity and fine-scale spatial genetic structure of D. nigra in an area of primary forest of a large reserve. All adult individuals (N = 112) were sampled in a 9.3 ha plot, and genotyped for microsatellite loci. Our results indicated high diversity with a mean of 8.6 alleles per locus, and expected heterozygosity equal to 0.74. The co-ancestry coefficients were significant for distances among trees up to 80 m. The Sp value was equal to 0.017 and indirect estimates of gene dispersal distances ranged from 89 to 144 m. No strong evidence of bottleneck or effects of human-disturbance was found. This study highlights that long-term efforts to protect a large area of Atlantic Forest have been effective towards maintaining the genetic diversity of D. nigra. The results of this study are important towards providing a guide for seed collection for ex-situ conservation and reforestation programmes of this threatened species.

  14. A fine structure genetic analysis evaluating ecoregional adaptability of a Bos taurus breed (Hereford.

    Directory of Open Access Journals (Sweden)

    H D Blackburn

    Full Text Available Ecoregional differences contribute to genetic environmental interactions and impact animal performance. These differences may become more important under climate change scenarios. Utilizing genetic diversity within a species to address such problems has not been fully explored. In this study Hereford cattle were genotyped with 50K Bead Chip or 770K Bovine Bead Chip to test the existence of genetic structure in five U.S. ecoregions characterized by precipitation, temperature and humidity and designated: cool arid (CA, cool humid (CH, transition zone (TZ, warm arid (WA, and warm humid (WH. SNP data were analyzed in three sequential analyses. Broad genetic structure was evaluated with STRUCTURE, and ADMIXTURE software using 14,312 SNPs after passing quality control variables. The second analysis was performed using principal coordinate analysis with 66 Tag SNPs associated in the literature with various aspects of environmental stressors (e.g., heat tolerance or production (e.g., milk production. In the third analysis TreeSelect was used with the 66 SNPs to evaluate if ecoregional allelic frequencies deviated from a central frequency and by so doing are indicative of directional selection. The three analyses suggested subpopulation structures associated with ecoregions from where animals were derived. ADMIXTURE and PCA results illustrated the importance of temperature and humidity and confirm subpopulation assignments. Comparisons of allele frequencies with TreeSelect showed ecoregion differences, in particular the divergence between arid and humid regions. Patterns of genetic variability obtained by medium and high density SNP chips can be used to acclimatize a temperately derived breed to various ecoregions. As climate change becomes an important factor in cattle production, this study should be used as a proof of concept to review future breeding and conservation schemes aimed at adaptation to climatic events.

  15. Development of genetic markers linked to straighthead resistance through fine mapping in rice (Oryza sativa L..

    Directory of Open Access Journals (Sweden)

    Xuhao Pan

    Full Text Available Straighthead, a physiological disorder characterized by sterile florets and distorted spikelets, causes significant yield losses in rice, and occurs in many countries. The current control method of draining paddies early in the season stresses plants, is costly, and wastes water. Development of resistant cultivar is regarded as the most efficient way for its control. We mapped a QTL for straighthead resistance using two recombinant inbred line (RIL F(9 populations that were phenotyped over two years using monosodium methanearsonate (MSMA to induce the symptoms. One population of 170 RILs was genotyped with 136 SSRs and the other population of 91 RILs was genotyped with 159 SSRs. A major QTL qSH-8 was identified in an overlapping region in both populations, and explained 46% of total variation in one and 67% in another population for straighthead resistance. qSH-8 was fine mapped from 1.0 Mbp to 340 kb using 7 SSR markers and further mapped to 290 kb in a population between RM22573 and InDel 27 using 4 InDel markers. SSR AP3858-1 and InDel 11 were within the fine mapped region, and co-segregated with straighthead resistance in both RIL populations, as well as in a collection of diverse global accessions. These results demonstrate that AP3858-1 and InDel 11 can be used for marker-assisted selection (MAS for straighthead resistant cultivars, which is especially important because there is no effective way to directly evaluate straighthead resistance.

  16. Fine-scale genetic structure and social organization in female white-tailed deer.

    Energy Technology Data Exchange (ETDEWEB)

    Comer, Christopher E.; Kilgo, John C.; D' Angelo, Gino J.; Glenn, Travis C.; Miller, Karl V.

    2005-07-01

    Abstract: Social behavior of white-tailed deer (Odocoileus virginianus) can have important management implications. The formation of matrilineal social groups among female deer has been documented and management strategies have been proposed based on this well-developed social structure. Using radiocollared (n = 17) and hunter or vehicle-killed (n = 21) does, we examined spatial and genetic structure in white-tailed deer on a 7,000-ha portion of the Savannah River Site in the upper Coastal Plain of South Carolina, USA. We used 14 microsatellite DNA loci to calculate pairwise relatedness among individual deer and to assign doe pairs to putative relationship categories. Linear distance and genetic relatedness were weakly correlated (r = –0.08, P = 0.058). Relationship categories differed in mean spatial distance, but only 60% of first-degree-related doe pairs (full sibling or mother–offspring pairs) and 38% of second-degree-related doe pairs (half sibling, grandmother–granddaughter pairs) were members of the same social group based on spatial association. Heavy hunting pressure in this population has created a young age structure among does, where the average age is <2.5 years, and <4% of does are >4.5 years old. This—combined with potentially elevated dispersal among young does—could limit the formation of persistent, cohesive social groups. Our results question the universal applicability of recently proposed models of spatial and genetic structuring in white-tailed deer, particularly in areas with differing harvest histories.

  17. Fine scale spatial genetic structure in Pouteria reticulata (Engl. Eyma (Sapotaceae, a dioecious, vertebrate dispersed tropical rain forest tree species

    Directory of Open Access Journals (Sweden)

    John W. Schroeder

    2014-08-01

    Full Text Available Dioecious tropical tree species often have small flowers and fleshy fruits indicative of small-insect pollination and vertebrate seed dispersal. We hypothesize that seed mediated gene flow should be exceed pollen-mediated gene flow in such species, leading to weak patterns of fine scale spatial genetic structure (SGS. In the present study, we characterize novel microsatellite DNA markers and test for SGS in sapling (N=100 and adult trees (N=99 of the dioecious canopy tree Pouteria reticulata (Sapotaceae in a 50 ha forest dynamics plot on Barro Colorado Island (BCI, Panama. The five genetic markers contained between five and 15 alleles per locus, totaling 51 alleles in the sample population. Significant SGS at local spatial scales (<100m was detected in the sapling (dbh≈1cm and adult (dbh≥20cm size classes, but was stronger in the former (sapling Sp=0.010±0.004, adult Sp=0.006±0.002, suggesting demographic thinning. The degree of SGS was lower than the value expected for non-vertebrate dispersed tropical trees (Sp=0.029, but similar to the average value for vertebrate dispersed tropical trees (Sp=0.009 affirming the dispersal potential of vertebrate dispersed tropical trees in faunally intact forests.

  18. Fine-scale genetic analysis of species-specific female preference in Drosophila simulans.

    Science.gov (United States)

    Laturney, M; Moehring, A J

    2012-09-01

    Behavioural differences are thought to be the first components to contribute to species isolation, yet the precise genetic basis of behavioural isolation remains poorly understood. Here, we used a combination of behaviour assays and genetic mapping to provide the first refined map locating candidate genes for interspecific female preference isolating Drosophila simulans from D. melanogaster. First, we tested whether two genes identified as affecting D. melanogaster female intraspecific mate choice also affect interspecific mate choice; neither of these genes was found to contribute to species-specific female preference. Next, we used deficiency mapping to locate genes on the right arm of the third chromosome for species-specific female preference and identified five small significant regions that contain candidate genes contributing to behavioural isolation. All five regions were located in areas that would have low interspecific recombination, which mirrors the results of other behavioural isolation studies that used quantitative trait locus (QTL) mapping, but without the potential concern of bias towards regions of low recombination that QTL mapping may have. As this model system may be refined to the individual gene level using the same methodology, this initial map we provide may potentially serve as a ready template for the identification and characterization of the first behavioural isolation genes. © 2012 The Authors. Journal of Evolutionary Biology © 2012 European Society For Evolutionary Biology.

  19. Landscape genetic analyses reveal fine-scale effects of forest fragmentation in an insular tropical bird.

    Science.gov (United States)

    Khimoun, Aurélie; Peterman, William; Eraud, Cyril; Faivre, Bruno; Navarro, Nicolas; Garnier, Stéphane

    2017-10-01

    Within the framework of landscape genetics, resistance surface modelling is particularly relevant to explicitly test competing hypotheses about landscape effects on gene flow. To investigate how fragmentation of tropical forest affects population connectivity in a forest specialist bird species, we optimized resistance surfaces without a priori specification, using least-cost (LCP) or resistance (IBR) distances. We implemented a two-step procedure in order (i) to objectively define the landscape thematic resolution (level of detail in classification scheme to describe landscape variables) and spatial extent (area within the landscape boundaries) and then (ii) to test the relative role of several landscape features (elevation, roads, land cover) in genetic differentiation in the Plumbeous Warbler (Setophaga plumbea). We detected a small-scale reduction of gene flow mainly driven by land cover, with a negative impact of the nonforest matrix on landscape functional connectivity. However, matrix components did not equally constrain gene flow, as their conductivity increased with increasing structural similarity with forest habitat: urban areas and meadows had the highest resistance values whereas agricultural areas had intermediate resistance values. Our results revealed a higher performance of IBR compared to LCP in explaining gene flow, reflecting suboptimal movements across this human-modified landscape, challenging the common use of LCP to design habitat corridors and advocating for a broader use of circuit theory modelling. Finally, our results emphasize the need for an objective definition of landscape scales (landscape extent and thematic resolution) and highlight potential pitfalls associated with parameterization of resistance surfaces. © 2017 John Wiley & Sons Ltd.

  20. Genetic characterization and fine mapping of the novel Phytophthora resistance gene in a Chinese soybean cultivar.

    Science.gov (United States)

    Zhang, Jiqing; Xia, Changjian; Wang, Xiaoming; Duan, Canxing; Sun, Suli; Wu, Xiaofei; Zhu, Zhendong

    2013-06-01

    Phytophthora root rot (PRR), caused by Phytophthora sojae Kaufmann & Gerdemann, is one of the most destructive diseases of soybean [Glycine max (L.) Merr.]. Deployment of resistance genes is the most economical and effective way of controlling the disease. The soybean cultivar 'Yudou 29' is resistant to many P. sojae isolates in China. The genetic basis of the resistance in 'Yudou 29' was elucidated through an inheritance study and molecular mapping. In response to 25 P. sojae isolates, 'Yudou 29' displayed a new resistance reaction pattern distinct from those of differentials carrying known Rps genes. A population of 214 F2:3 families from a cross between 'Jikedou 2' (PRR susceptible) and 'Yudou 29' was used for Rps gene mapping. The segregation fit a ratio of 1:2:1 for resistance:segregation:susceptibility within this population, indicating that resistance in 'Yudou 29' is controlled by a single dominant gene. This gene was temporarily named RpsYD29 and mapped on soybean chromosome 03 (molecular linkage group N; MLG N) flanked by SSR markers SattWM82-50 and Satt1k4b at a genetic distance of 0.5 and 0.2 cM, respectively. Two nucleotide binding site-leucine rich repeat (NBS-LRR) type genes were detected in the 204.8 kb region between SattWM82-50 and Satt1k4b. These two genes showed high similarity to Rps1k in amino acid sequence and could be candidate genes for PRR resistance. Based on the phenotype reactions and the physical position on soybean chromosome 03, RpsYD29 might be a novel allele at, or a novel gene tightly linked to, the Rps1 locus.

  1. Higher fine-scale genetic structure in peripheral than in core populations of a long-lived and mixed-mating conifer - eastern white cedar (Thuja occidentalis L.)

    Science.gov (United States)

    2012-01-01

    Background Fine-scale or spatial genetic structure (SGS) is one of the key genetic characteristics of plant populations. Several evolutionary and ecological processes and population characteristics influence the level of SGS within plant populations. Higher fine-scale genetic structure may be expected in peripheral than core populations of long-lived forest trees, owing to the differences in the magnitude of operating evolutionary and ecological forces such as gene flow, genetic drift, effective population size and founder effects. We addressed this question using eastern white cedar (Thuja occidentalis) as a model species for declining to endangered long-lived tree species with mixed-mating system. Results We determined the SGS in two core and two peripheral populations of eastern white cedar from its Maritime Canadian eastern range using six nuclear microsatellite DNA markers. Significant SGS ranging from 15 m to 75 m distance classes was observed in the four studied populations. An analysis of combined four populations revealed significant positive SGS up to the 45 m distance class. The mean positive significant SGS observed in the peripheral populations was up to six times (up to 90 m) of that observed in the core populations (15 m). Spatial autocorrelation coefficients and correlograms of single and sub-sets of populations were statistically significant. The extent of within-population SGS was significantly negatively correlated with all genetic diversity parameters. Significant heterogeneity of within-population SGS was observed for 0-15 m and 61-90 m between core and peripheral populations. Average Sp, and gene flow distances were higher in peripheral (Sp = 0.023, σg = 135 m) than in core (Sp = 0.014, σg = 109 m) populations. However, the mean neighborhood size was higher in the core (Nb = 82) than in the peripheral (Nb = 48) populations. Conclusion Eastern white cedar populations have significant fine-scale genetic structure at short distances. Peripheral

  2. Higher fine-scale genetic structure in peripheral than in core populations of a long-lived and mixed-mating conifer - eastern white cedar (Thuja occidentalis L.

    Directory of Open Access Journals (Sweden)

    Pandey Madhav

    2012-04-01

    Full Text Available Abstract Background Fine-scale or spatial genetic structure (SGS is one of the key genetic characteristics of plant populations. Several evolutionary and ecological processes and population characteristics influence the level of SGS within plant populations. Higher fine-scale genetic structure may be expected in peripheral than core populations of long-lived forest trees, owing to the differences in the magnitude of operating evolutionary and ecological forces such as gene flow, genetic drift, effective population size and founder effects. We addressed this question using eastern white cedar (Thuja occidentalis as a model species for declining to endangered long-lived tree species with mixed-mating system. Results We determined the SGS in two core and two peripheral populations of eastern white cedar from its Maritime Canadian eastern range using six nuclear microsatellite DNA markers. Significant SGS ranging from 15 m to 75 m distance classes was observed in the four studied populations. An analysis of combined four populations revealed significant positive SGS up to the 45 m distance class. The mean positive significant SGS observed in the peripheral populations was up to six times (up to 90 m of that observed in the core populations (15 m. Spatial autocorrelation coefficients and correlograms of single and sub-sets of populations were statistically significant. The extent of within-population SGS was significantly negatively correlated with all genetic diversity parameters. Significant heterogeneity of within-population SGS was observed for 0-15 m and 61-90 m between core and peripheral populations. Average Sp, and gene flow distances were higher in peripheral (Sp = 0.023, σg = 135 m than in core (Sp = 0.014, σg = 109 m populations. However, the mean neighborhood size was higher in the core (Nb = 82 than in the peripheral (Nb = 48 populations. Conclusion Eastern white cedar populations have significant fine-scale genetic structure at short

  3. Fine-scale variation and genetic determinants of alternative splicing across individuals.

    Directory of Open Access Journals (Sweden)

    Jasmin Coulombe-Huntington

    2009-12-01

    Full Text Available Recently, thanks to the increasing throughput of new technologies, we have begun to explore the full extent of alternative pre-mRNA splicing (AS in the human transcriptome. This is unveiling a vast layer of complexity in isoform-level expression differences between individuals. We used previously published splicing sensitive microarray data from lymphoblastoid cell lines to conduct an in-depth analysis on splicing efficiency of known and predicted exons. By combining publicly available AS annotation with a novel algorithm designed to search for AS, we show that many real AS events can be detected within the usually unexploited, speculative majority of the array and at significance levels much below standard multiple-testing thresholds, demonstrating that the extent of cis-regulated differential splicing between individuals is potentially far greater than previously reported. Specifically, many genes show subtle but significant genetically controlled differences in splice-site usage. PCR validation shows that 42 out of 58 (72% candidate gene regions undergo detectable AS, amounting to the largest scale validation of isoform eQTLs to date. Targeted sequencing revealed a likely causative SNP in most validated cases. In all 17 incidences where a SNP affected a splice-site region, in silico splice-site strength modeling correctly predicted the direction of the micro-array and PCR results. In 13 other cases, we identified likely causative SNPs disrupting predicted splicing enhancers. Using Fst and REHH analysis, we uncovered significant evidence that 2 putative causative SNPs have undergone recent positive selection. We verified the effect of five SNPs using in vivo minigene assays. This study shows that splicing differences between individuals, including quantitative differences in isoform ratios, are frequent in human populations and that causative SNPs can be identified using in silico predictions. Several cases affected disease-relevant genes and

  4. Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides.

    Directory of Open Access Journals (Sweden)

    Shuhong Ouyang

    Full Text Available Powdery mildew, caused by Blumeria graminis f. sp. tritici, is one of the most important wheat diseases in the world. In this study, a single dominant powdery mildew resistance gene MlIW172 was identified in the IW172 wild emmer accession and mapped to the distal region of chromosome arm 7AL (bin7AL-16-0.86-0.90 via molecular marker analysis. MlIW172 was closely linked with the RFLP probe Xpsr680-derived STS marker Xmag2185 and the EST markers BE405531 and BE637476. This suggested that MlIW172 might be allelic to the Pm1 locus or a new locus closely linked to Pm1. By screening genomic BAC library of durum wheat cv. Langdon and 7AL-specific BAC library of hexaploid wheat cv. Chinese Spring, and after analyzing genome scaffolds of Triticum urartu containing the marker sequences, additional markers were developed to construct a fine genetic linkage map on the MlIW172 locus region and to delineate the resistance gene within a 0.48 cM interval. Comparative genetics analyses using ESTs and RFLP probe sequences flanking the MlIW172 region against other grass species revealed a general co-linearity in this region with the orthologous genomic regions of rice chromosome 6, Brachypodium chromosome 1, and sorghum chromosome 10. However, orthologous resistance gene-like RGA sequences were only present in wheat and Brachypodium. The BAC contigs and sequence scaffolds that we have developed provide a framework for the physical mapping and map-based cloning of MlIW172.

  5. Ex vivo multiscale quantitation of skin biomechanics in wild-type and genetically-modified mice using multiphoton microscopy

    Science.gov (United States)

    Bancelin, Stéphane; Lynch, Barbara; Bonod-Bidaud, Christelle; Ducourthial, Guillaume; Psilodimitrakopoulos, Sotiris; Dokládal, Petr; Allain, Jean-Marc; Schanne-Klein, Marie-Claire; Ruggiero, Florence

    2015-12-01

    Soft connective tissues such as skin, tendon or cornea are made of about 90% of extracellular matrix proteins, fibrillar collagens being the major components. Decreased or aberrant collagen synthesis generally results in defective tissue mechanical properties as the classic form of Elhers-Danlos syndrome (cEDS). This connective tissue disorder is caused by mutations in collagen V genes and is mainly characterized by skin hyperextensibility. To investigate the relationship between the microstructure of normal and diseased skins and their macroscopic mechanical properties, we imaged and quantified the microstructure of dermis of ex vivo murine skin biopsies during uniaxial mechanical assay using multiphoton microscopy. We used two genetically-modified mouse lines for collagen V: a mouse model for cEDS harboring a Col5a2 deletion (a.k.a. pN allele) and the transgenic K14-COL5A1 mice which overexpress the human COL5A1 gene in skin. We showed that in normal skin, the collagen fibers continuously align with stretch, generating the observed increase in mechanical stress. Moreover, dermis from both transgenic lines exhibited altered collagen reorganization upon traction, which could be linked to microstructural modifications. These findings show that our multiscale approach provides new crucial information on the biomechanics of dermis that can be extended to all collagen-rich soft tissues.

  6. Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.

    Science.gov (United States)

    Singh, Sujeet Kumar; Aspi, Jouni; Kvist, Laura; Sharma, Reeta; Pandey, Puneet; Mishra, Sudhanshu; Singh, Randeep; Agrawal, Manoj; Goyal, Surendra Prakash

    2017-01-01

    Despite massive global conservation strategies, tiger populations continued to decline until recently, mainly due to habitat loss, human-animal conflicts, and poaching. These factors are known to affect the genetic characteristics of tiger populations and decrease local effective population sizes. The Terai Arc Landscape (TAL) at the foothills of the Himalaya is one of the 42 source sites of tigers around the globe. Therefore, information on how landscape features and anthropogenic factors affect the fine-scale spatial genetic structure and variation of tigers in TAL is needed to develop proper management strategies for achieving long-term conservation goals. We document, for the first time, the genetic characteristics of this tiger population by genotyping 71 tiger samples using 13 microsatellite markers from the western region of TAL (WTAL) of 1800 km2. Specifically, we aimed to estimate the genetic variability, population structure, and gene flow. The microsatellite markers indicated that the levels of allelic diversity (MNA = 6.6) and genetic variation (Ho = 0.50, HE = 0.64) were slightly lower than those reported previously in other Bengal tiger populations. We observed moderate gene flow and significant genetic differentiation (FST= 0.060) and identified the presence of cryptic genetic structure using Bayesian and non-Bayesian approaches. There was low and significantly asymmetric migration between the two main subpopulations of the Rajaji Tiger Reserve and the Corbett Tiger Reserve in WTAL. Sibship relationships indicated that the functionality of the corridor between these subpopulations may be retained if the quality of the habitat does not deteriorate. However, we found that gene flow is not adequate in view of changing land use matrices. We discuss the need to maintain connectivity by implementing the measures that have been suggested previously to minimize the level of human disturbance, including relocation of villages and industries, prevention of

  7. Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris in a human-dominated western Terai Arc Landscape, India.

    Directory of Open Access Journals (Sweden)

    Sujeet Kumar Singh

    Full Text Available Despite massive global conservation strategies, tiger populations continued to decline until recently, mainly due to habitat loss, human-animal conflicts, and poaching. These factors are known to affect the genetic characteristics of tiger populations and decrease local effective population sizes. The Terai Arc Landscape (TAL at the foothills of the Himalaya is one of the 42 source sites of tigers around the globe. Therefore, information on how landscape features and anthropogenic factors affect the fine-scale spatial genetic structure and variation of tigers in TAL is needed to develop proper management strategies for achieving long-term conservation goals. We document, for the first time, the genetic characteristics of this tiger population by genotyping 71 tiger samples using 13 microsatellite markers from the western region of TAL (WTAL of 1800 km2. Specifically, we aimed to estimate the genetic variability, population structure, and gene flow. The microsatellite markers indicated that the levels of allelic diversity (MNA = 6.6 and genetic variation (Ho = 0.50, HE = 0.64 were slightly lower than those reported previously in other Bengal tiger populations. We observed moderate gene flow and significant genetic differentiation (FST= 0.060 and identified the presence of cryptic genetic structure using Bayesian and non-Bayesian approaches. There was low and significantly asymmetric migration between the two main subpopulations of the Rajaji Tiger Reserve and the Corbett Tiger Reserve in WTAL. Sibship relationships indicated that the functionality of the corridor between these subpopulations may be retained if the quality of the habitat does not deteriorate. However, we found that gene flow is not adequate in view of changing land use matrices. We discuss the need to maintain connectivity by implementing the measures that have been suggested previously to minimize the level of human disturbance, including relocation of villages and industries

  8. Genetic Etiology of Renal Agenesis : Fine Mapping of Renag1 and Identification of Kit as the Candidate Functional Gene

    NARCIS (Netherlands)

    Samanas, Nyssa Becker; Commers, Tessa W.; Dennison, Kirsten L.; Harenda, Quincy Eckert; Kurz, Scott G.; Lachel, Cynthia M.; Wavrin, Kristen Leland; Bowler, Michael; Nijman, Isaac J.; Guryev, Victor; Cuppen, Edwin; Hubner, Norbert; Sullivan, Ruth; Vezina, Chad M.; Shull, James D.

    2015-01-01

    Congenital anomalies of the kidney and urogenital tract (CAKUT) occur in approximately 0.5% of live births and represent the most frequent cause of end-stage renal disease in neonates and children. The genetic basis of CAKUT is not well defined. To understand more fully the genetic basis of one type

  9. Linking movement behavior and fine-scale genetic structure to model landscape connectivity for bobcats (Lynx rufus)

    Science.gov (United States)

    Dawn M. Reding; Samuel A. Cushman; Todd E. Gosselink; William R. Clark

    2013-01-01

    Spatial heterogeneity can constrain the movement of individuals and consequently genes across a landscape, influencing demographic and genetic processes. In this study, we linked information on landscape composition, movement behavior, and genetic differentiation to gain a mechanistic understanding of how spatial heterogeneity may influence movement and gene flow of...

  10. Genetic analysis reveals efficient sexual spore dispersal at a fine spatial scale in Armillaria ostoyae, the causal agent of root-rot disease in conifers.

    Science.gov (United States)

    Dutech, Cyril; Labbé, Frédéric; Capdevielle, Xavier; Lung-Escarmant, Brigitte

    Armillaria ostoyae (sometimes named Armillaria solidipes) is a fungal species causing root diseases in numerous coniferous forests of the northern hemisphere. The importance of sexual spores for the establishment of new disease centres remains unclear, particularly in the large maritime pine plantations of southwestern France. An analysis of the genetic diversity of a local fungal population distributed over 500 ha in this French forest showed genetic recombination between genotypes to be frequent, consistent with regular sexual reproduction within the population. The estimated spatial genetic structure displayed a significant pattern of isolation by distance, consistent with the dispersal of sexual spores mostly at the spatial scale studied. Using these genetic data, we inferred an effective density of reproductive individuals of 0.1-0.3 individuals/ha, and a second moment of parent-progeny dispersal distance of 130-800 m, compatible with the main models of fungal spore dispersal. These results contrast with those obtained for studies of A. ostoyae over larger spatial scales, suggesting that inferences about mean spore dispersal may be best performed at fine spatial scales (i.e. a few kilometres) for most fungal species. Copyright © 2017 British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  11. Fine Physical and Genetic Mapping of Powdery Mildew Resistance Gene MlIW172 Originating from Wild Emmer (Triticum dicoccoides)

    Czech Academy of Sciences Publication Activity Database

    Ouyang, S.H.; Zhang, D.; Han, J.; Zhao, X.J.; Cui, Y.; Song, W.; Keeble-Gagnere, G.; Appels, R.; Doležel, Jaroslav; Ling, H.Q.; Sun, Q.X.; Liu, Z.Y.

    2014-01-01

    Roč. 9, č. 6 (2014) E-ISSN 1932-6203 Institutional support: RVO:61389030 Keywords : TURGIDUM VAR. DICOCCOIDES * CHROMOSOME BIN MAP * SEQUENCE TAG LOCI Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.234, year: 2014

  12. Fine-scale population genetic structure of a wildlife disease vector: the southern house mosquito on the island of Hawaii.

    Science.gov (United States)

    Keyghobadi, Nusha; Lapointe, Dennis; Fleischer, Robert C; Fonseca, Dina M

    2006-11-01

    The southern house mosquito, Culex quinquefasciatus, is a widespread tropical and subtropical disease vector. In the Hawaiian Islands, where it was introduced accidentally almost two centuries ago, it is considered the primary vector of avian malaria and pox. Avian malaria in particular has contributed to the extinction and endangerment of Hawaii's native avifauna, and has altered the altitudinal distribution of native bird populations. We examined the population genetic structure of Cx. quinquefasciatus on the island of Hawaii at a smaller spatial scale than has previously been attempted, with particular emphasis on the effects of elevation on population genetic structure. We found significant genetic differentiation among populations and patterns of isolation by distance within the island. Elevation per se did not have a limiting effect on gene flow; however, there was significantly lower genetic diversity among populations at mid elevations compared to those at low elevations. A recent sample taken from just above the predicted upper altitudinal distribution of Cx. quinquefasciatus on the island of Hawaii was confirmed as being a temporary summer population and appeared to consist of individuals from more than one source population. Our results indicate effects of elevation gradients on genetic structure that are consistent with known effects of elevation on population dynamics of this disease vector.

  13. Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species.

    Directory of Open Access Journals (Sweden)

    Paloma Torroba-Balmori

    Full Text Available The analysis of fine-scale spatial genetic structure (FSGS within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations.

  14. Fine-scale population genetic structure and short-range sex-biased dispersal in a solitary carnivore, Lutra lutra

    Czech Academy of Sciences Publication Activity Database

    Quaglietta, L.; Fonseca, V. C.; Hájková, Petra; Mira, A.; Boitani, L.

    2013-01-01

    Roč. 94, č. 3 (2013), s. 561-571 ISSN 0022-2372 Institutional support: RVO:68081766 Keywords : conservation genetics * dispersal distances * Eurasian otter * isolation by distance * radiotracking * restricted gene flow * spatial relatedness structure * spatiotemporal scale Subject RIV: EG - Zoology Impact factor: 2.225, year: 2013

  15. Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia River Basin.

    Science.gov (United States)

    Hess, J E; Matala, A P; Narum, S R

    2011-03-01

    Genetic stock identification (GSI) is an important tool in fisheries management. Microsatellites (μSATs) have been the dominant genetic marker for GSI; however, increasing availability and numerous advantages of single-nucleotide polymorphism (SNP) markers make them an appealing alternative. We tested performance of 13 μSAT vs. 92 SNP loci in a fine-scale application of GSI, using a new baseline for Chinook salmon consisting of 49 collections (n = 4014) distributed across the Columbia River Basin. In GSI, baseline genotypes for both marker sets were used independently to analyse a real fishery mixture (n = 2731) representing the total run of Chinook salmon passing Bonneville Dam in the Columbia River. Marker sets were evaluated using three criteria: (i) ability to differentiate reporting groups, (ii) proportion of correct assignment in mixture simulation tests and baseline leave-one-out analyses and (iii) individual assignment and confidence intervals around estimated stock proportions of a real fishery mixture. The μSATs outperformed the SNPs in resolving fine-scale relationships, but all 105 markers combined provided greatest power for GSI. SNPs were ranked by relative information content based on both an iterative procedure that optimized correct assignment to the baseline and ranking by minor allele frequency. For both methods, we identified a subset of the top 50 ranked loci, which were similar in assignment accuracy, and both reached maximum available power of the total 92 SNP loci (correct assignment = 73%). Our estimates indicate that between 100 and 200 highly informative SNP loci are required to meet management standards (correct assignment > 90%) for resolving stocks in finer-scale GSI applications. © 2011 Blackwell Publishing Ltd.

  16. Positional cloning of the Hybrid sterility 1 gene: fine genetic mapping and evaluation of two candidate genes

    Czech Academy of Sciences Publication Activity Database

    Trachtulec, Zdeněk; Mihola, Ondřej; Vlček, Čestmír; Himmelbauer, H.; Pačes, Václav; Forejt, Jiří

    2005-01-01

    Roč. 84, - (2005), s. 637-641 ISSN 0024-4066 R&D Projects: GA MŠk(CZ) LN00A079; GA ČR(CZ) GA204/01/0997; GA ČR(CZ) GV204/98/K015 Institutional research plan: CEZ:AV0Z5052915 Keywords : house mouse * Mus musculus * speciation Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.261, year: 2005

  17. Fine-mapping the MHC locus in juvenile idiopathic arthritis (JIA) reveals genetic heterogeneity corresponding to distinct adult inflammatory arthritic diseases.

    Science.gov (United States)

    Hinks, A; Bowes, J; Cobb, J; Ainsworth, H C; Marion, M C; Comeau, M E; Sudman, M; Han, B; Becker, M L; Bohnsack, J F; de Bakker, P I W; Haas, J P; Hazen, M; Lovell, D J; Nigrovic, P A; Nordal, E; Punnaro, M; Rosenberg, A M; Rygg, M; Smith, S L; Wise, C A; Videm, V; Wedderburn, L R; Yarwood, A; Yeung, R S M; Prahalad, S; Langefeld, C D; Raychaudhuri, S; Thompson, S D; Thomson, W

    2017-04-01

    Juvenile idiopathic arthritis (JIA) is a heterogeneous group of diseases, comprising seven categories. Genetic data could potentially be used to help redefine JIA categories and improve the current classification system. The human leucocyte antigen (HLA) region is strongly associated with JIA. Fine-mapping of the region was performed to look for similarities and differences in HLA associations between the JIA categories and define correspondences with adult inflammatory arthritides. Dense genotype data from the HLA region, from the Immunochip array for 5043 JIA cases and 14 390 controls, were used to impute single-nucleotide polymorphisms, HLA classical alleles and amino acids. Bivariate analysis was performed to investigate genetic correlation between the JIA categories. Conditional analysis was used to identify additional effects within the region. Comparison of the findings with those in adult inflammatory arthritic diseases was performed. We identified category-specific associations and have demonstrated for the first time that rheumatoid factor (RF)-negative polyarticular JIA and oligoarticular JIA are genetically similar in their HLA associations. We also observe that each JIA category potentially has an adult counterpart. The RF-positive polyarthritis association at HLA-DRB1 amino acid at position 13 mirrors the association in adult seropositive rheumatoid arthritis (RA). Interestingly, the combined oligoarthritis and RF-negative polyarthritis dataset shares the same association with adult seronegative RA. The findings suggest the value of using genetic data in helping to classify the categories of this heterogeneous disease. Mapping JIA categories to adult counterparts could enable shared knowledge of disease pathogenesis and aetiology and facilitate transition from paediatric to adult services. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

  18. Fine-mapping of QTLs for individual and total isoflavone content in soybean (Glycine max L.) using a high-density genetic map.

    Science.gov (United States)

    Cai, Zhandong; Cheng, Yanbo; Ma, Zhuwen; Liu, Xinguo; Ma, Qibin; Xia, Qiuju; Zhang, Gengyun; Mu, Yinghui; Nian, Hai

    2018-03-01

    Fifteen stable QTLs were identified using a high-density soybean genetic map across multiple environments. One major QTL, qIF5-1, contributing to total isoflavone content explained phenotypic variance 49.38, 43.27, 46.59, 45.15 and 52.50%, respectively. Soybeans (Glycine max L.) are a major source of dietary isoflavones. To identify novel quantitative trait loci (QTL) underlying isoflavone content, and to improve the accuracy of marker-assisted breeding in soybean, a valuable mapping population comprised of 196 F 7:8-10 recombinant inbred lines (RILs, Huachun 2 × Wayao) was utilized to evaluate individual and total isoflavone content in plants grown in four different environments in Guangdong. A high-density genetic linkage map containing 3469 recombination bin markers based on 0.2 × restriction site-associated DNA tag sequencing (RAD-seq) technology was used to finely map QTLs for both individual and total isoflavone contents. Correlation analyses showed that total isoflavone content, and that of five individual isoflavone, was significantly correlated across the four environments. Based on the high-density genetic linkage map, a total of 15 stable quantitative trait loci (QTLs) associated with isoflavone content across multiple environments were mapped onto chromosomes 02, 05, 07, 09, 10, 11, 13, 16, 17, and 19. Further, one of them, qIF5-1, localized to chromosomes 05 (38,434,171-39,045,620 bp) contributed to almost all isoflavone components across all environments, and explained 6.37-59.95% of the phenotypic variance, especially explained 49.38, 43.27, 46.59, 45.15 and 52.50% for total isoflavone. The results obtained in the present study will pave the way for a better understanding of the genetics of isoflavone accumulation and reveals the scope available for improvement of isoflavone content through marker-assisted selection.

  19. Fine-scale genetic structure patterns in two freshwater fish species, Geophagus brasiliensis (Osteichthyes, Cichlidae) and Astyanax altiparanae (Osteichthyes, Characidae) throughout a Neotropical stream.

    Science.gov (United States)

    Ferreira, D G; Lima, S C; Frantine-Silva, W; Silva, J F; Apolinário-Silva, C; Sofia, S H; Carvalho, S; Galindo, B A

    2016-10-24

    Streams are very important environments for Neotropical freshwater fish fauna, and possess a high number of species. These small drainages are also highlighted by their intrinsic biological and physicochemical features; however, knowledge on the genetic distribution of fish in these drainages is limited. Therefore, in the present study, RAPD (random amplified polymorphic DNA) and microsatellite markers were used to analyze population differentiation and gene flow of Astyanax altiparanae and Geophagus brasiliensis from three sites (high, medium, and low) throughout the Penacho stream (about 32 km long), which is a Neotropical stream. Both markers revealed higher levels of genetic diversity levels for A. altiparanae (: 90.05; H S : 0.350) compared to G. brasiliensis (: 30.43; H S : 0.118), which may be related to the particular biology of each species. AMOVA revealed significant genetic variation among populations of each species. All pairwise Φ ST values were significant, ranging from 0.020 to 0.056 for A. altiparanae samples, and from 0.065 to 0.190 for G. brasiliensis samples. Bayesian clustering analysis corroborated these results and revealed clusters of both A. altiparanae (two based on RAPD data) and G. brasiliensis (two based on RAPD data and three on microsatellite data). Gene flow estimates showed that there were similar rates of migration among A. altiparanae samples and low rates of migration among some G. brasiliensis samples. These results suggest patterns of fine-scale genetic structure for both species in the Penacho stream. This information may enhance knowledge of Neotropical streams and may be useful for future management and conservation activities.

  20. Fine genetic map of mouse chromosome 10 around the polycystic kidney disease gene, jcpk, and ankyrin 3

    Energy Technology Data Exchange (ETDEWEB)

    Bryda, E.C.; Ling, H.; Rathbun, D.E. [New York State Department of Health, Albany, NY (United States)] [and others

    1996-08-01

    A chlorambucil (CHL)-induced mutation of the jcpk (juvenile congenital polycystic kidney disease) gene causes a severe early onset polycystic kidney disease. In an intercross involving Mus musculus castaneus, jcpk was precisely mapped 0.2 cM distal to D10Mit115 and 0.8 cM proximal to D10Mit173. In addition, five genes, Cdc2a, Col6al, Col6a2, Bcr, and Ank3 were mapped in both this jcpk intercross and a (BALB/c X CAST/Ei)F{sub 1} x BALB/c backcross. All five genes were eliminated as possible candidates for jcpk based on the mapping data. The jcpk intercross allowed the orientation of the Ank3 gene relative to the centromere to be determined. D10Mit115, D10Mit173, D10Mit199, and D10Mit200 were separated genetically in this cross. The order and genetic distances of all markers and gene loci mapped in the jcpk intercross were consistent with those derived from the BALB/c backcross, indicating that the CHL-induced lesion has not generated any gross chromosomal abnormalities detectable in these studies. 39 refs., 3 figs.

  1. Evaluating the Association between Keratoconus and Reported Genetic Loci in a Han Chinese Population.

    Science.gov (United States)

    Hao, Xiao-Dan; Chen, Peng; Chen, Zhao-Li; Li, Su-Xia; Wang, Ye

    2015-06-01

    Keratoconus (KC) is a complex degenerative disorder of the cornea. Genetic, environmental, and lifestyle factors may all contribute to the pathogenesis of KC. Most of the reported KC-associated SNPs have been detected in Caucasians and Australians. To investigate whether the reported associated SNPs can be found in a Chinese population, we performed a replication study of the significantly associated SNPs. A total of 210 unrelated Chinese KC patients and 191 unrelated controls were included in the present study. SNPs rs4954218 (Near RAB3GAP1 (5')), rs4894535 (FNDC3B), rs2956540 (LOX), rs3735520 (Near HGF (5')), rs1324183 (MPDZ-NF1B), rs1536482 (RXRA-COL5A1), rs7044529 (COL5A1), rs2721051 (Near FOXO1 (3')), rs9938149 (BANP-ZNF469) and rs6050307 (VSX1) were assessed for their association with KC. The genotype of each SNP was detected using the Sequenom MassARRAY-Assay. SNP rs1324183 located in MPDZ-NF1B was associated with an increased risk of KC (OR=3.108, 95% CI=1.366-7.072, p=0.005), and SNP rs2956540 in the LOX gene may confer a reduced risk of KC with a borderline p value in our population (OR=0.664, 95% CI=0.447-0.986, p=0.042). No significant difference was observed between patients and controls in the other eight SNP genotypes and allele frequencies. The replication association of rs1324183 (MPDZ-NF1B) with KC in our population and the results, which are identical to those in different populations, suggest that rs1324183 (MPDZ-NF1B) is a common genetic risk for KC and should be further investigated.

  2. Intratumor genetic heterogeneity of breast carcinomas as determined by fine needle aspiration and TaqMan low density array

    DEFF Research Database (Denmark)

    Lyng, Maria B.; Laenkholm, Anne-Vibeke; Pallisgaard, Niels

    2007-01-01

    surgery were split in halves and FNAs were obtained from each half. A tissue biopsy of the tumors was also snap-frozen for comparison. Non-amplified RNA was investigated by the novel qRT-PCR-based technique, Low Density Array (LDA) using 4 reference genes and 44 target genes. RESULTS: Comparison of gene...... expression at the single gene level in the two FNA samples from each tumor demonstrated various degrees of heterogeneity. However, compared as gene expression profiles, intratumor correlations for 9/12 patients were high and these pairs could in a theoretical blinding of all the FNAs be correctly matched...... by statistical analysis. High correlations between the gene profiles of tumor FNAs and tissue biopsies from the same patient were observed for all patients. A cluster analysis identified clustering of both the two FNAs and the tissue biopsy of the same 9 patients. CONCLUSION: The overall genetic heterogeneity...

  3. Higher fine-scale genetic structure in peripheral than in core populations of a long-lived and mixed-mating conifer--eastern white cedar (Thuja occidentalis L.).

    Science.gov (United States)

    Pandey, Madhav; Rajora, Om P

    2012-04-05

    Fine-scale or spatial genetic structure (SGS) is one of the key genetic characteristics of plant populations. Several evolutionary and ecological processes and population characteristics influence the level of SGS within plant populations. Higher fine-scale genetic structure may be expected in peripheral than core populations of long-lived forest trees, owing to the differences in the magnitude of operating evolutionary and ecological forces such as gene flow, genetic drift, effective population size and founder effects. We addressed this question using eastern white cedar (Thuja occidentalis) as a model species for declining to endangered long-lived tree species with mixed-mating system. We determined the SGS in two core and two peripheral populations of eastern white cedar from its Maritime Canadian eastern range using six nuclear microsatellite DNA markers. Significant SGS ranging from 15 m to 75 m distance classes was observed in the four studied populations. An analysis of combined four populations revealed significant positive SGS up to the 45 m distance class. The mean positive significant SGS observed in the peripheral populations was up to six times (up to 90 m) of that observed in the core populations (15 m). Spatial autocorrelation coefficients and correlograms of single and sub-sets of populations were statistically significant. The extent of within-population SGS was significantly negatively correlated with all genetic diversity parameters. Significant heterogeneity of within-population SGS was observed for 0-15 m and 61-90 m between core and peripheral populations. Average Sp, and gene flow distances were higher in peripheral (Sp = 0.023, σg = 135 m) than in core (Sp = 0.014, σg = 109 m) populations. However, the mean neighborhood size was higher in the core (Nb = 82) than in the peripheral (Nb = 48) populations. Eastern white cedar populations have significant fine-scale genetic structure at short distances. Peripheral populations have several

  4. Genetics in Keratoconus: where are we?

    Science.gov (United States)

    Bykhovskaya, Yelena; Margines, Benjamin; Rabinowitz, Yaron S

    2016-01-01

    Keratoconus (KC) is a non-inflammatory thinning and protrusion of the cornea in which the cornea assumes a conical shape. Complex etiology of this condition at present remains an enigma. Although environmental factors have been involved in KC pathogenesis, strong underlining genetic susceptibility has been proven. The lack of consistent findings among early genetic studies suggested a heterogeneity and complex nature of the genetic contribution to the development of KC. Recently, genome-wide linkage studies (GWLS) and genome-wide association studies (GWAS) were undertaken. Next-generation sequencing (NGS)-based genomic screens are also currently being carried out. Application of these recently developed comprehensive genetic tools led to a much greater success and increased reproducibility of genetic findings in KC. Involvement of the LOX gene identified through GWLS has been confirmed in multiple cohorts of KC patients around the world. KC susceptibility region located at the 2q21.3 chromosomal region near the RAB3GAP1 gene identified through GWAS was independently replicated. Rare variants in the ZNF469 gene (mutated in corneal dystrophy Brittle Cornea Syndrome) and in the TGFBI gene (mutated in multiple corneal epithelial-stromal TGFBI dystrophies) have been repeatedly identified in familial and sporadic KC patients of different ethnicities. Additional comprehensive strategies using quantitative endophenotypes have been successfully employed to bring further understanding to the genetics of KC. Additional genetic determinants including the COL5A1 gene have been identified in the GWAS of KC-related trait central corneal thickness. These recent discoveries confirmed the importance of the endophenotype approach for studying complex genetic diseases such as KC and showed that different connective tissue disorders may have the same genetic determinants.

  5. Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.

    Directory of Open Access Journals (Sweden)

    Maggie C Y Ng

    2017-04-01

    Full Text Available Genome-wide association studies (GWAS have identified >300 loci associated with measures of adiposity including body mass index (BMI and waist-to-hip ratio (adjusted for BMI, WHRadjBMI, but few have been identified through screening of the African ancestry genomes. We performed large scale meta-analyses and replications in up to 52,895 individuals for BMI and up to 23,095 individuals for WHRadjBMI from the African Ancestry Anthropometry Genetics Consortium (AAAGC using 1000 Genomes phase 1 imputed GWAS to improve coverage of both common and low frequency variants in the low linkage disequilibrium African ancestry genomes. In the sex-combined analyses, we identified one novel locus (TCF7L2/HABP2 for WHRadjBMI and eight previously established loci at P < 5×10-8: seven for BMI, and one for WHRadjBMI in African ancestry individuals. An additional novel locus (SPRYD7/DLEU2 was identified for WHRadjBMI when combined with European GWAS. In the sex-stratified analyses, we identified three novel loci for BMI (INTS10/LPL and MLC1 in men, IRX4/IRX2 in women and four for WHRadjBMI (SSX2IP, CASC8, PDE3B and ZDHHC1/HSD11B2 in women in individuals of African ancestry or both African and European ancestry. For four of the novel variants, the minor allele frequency was low (<5%. In the trans-ethnic fine mapping of 47 BMI loci and 27 WHRadjBMI loci that were locus-wide significant (P < 0.05 adjusted for effective number of variants per locus from the African ancestry sex-combined and sex-stratified analyses, 26 BMI loci and 17 WHRadjBMI loci contained ≤ 20 variants in the credible sets that jointly account for 99% posterior probability of driving the associations. The lead variants in 13 of these loci had a high probability of being causal. As compared to our previous HapMap imputed GWAS for BMI and WHRadjBMI including up to 71,412 and 27,350 African ancestry individuals, respectively, our results suggest that 1000 Genomes imputation showed modest improvement

  6. Anne Fine

    Directory of Open Access Journals (Sweden)

    Philip Gaydon

    2015-04-01

    Full Text Available An interview with Anne Fine with an introduction and aside on the role of children’s literature in our lives and development, and our adult perceptions of the suitability of childhood reading material. Since graduating from Warwick in 1968 with a BA in Politics and History, Anne Fine has written over fifty books for children and eight for adults, won the Carnegie Medal twice (for Goggle-Eyes in 1989 and Flour Babies in 1992, been a highly commended runner-up three times (for Bill’s New Frock in 1989, The Tulip Touch in 1996, and Up on Cloud Nine in 2002, been shortlisted for the Hans Christian Andersen Award (the highest recognition available to a writer or illustrator of children’s books, 1998, undertaken the positon of Children’s Laureate (2001-2003, and been awarded an OBE for her services to literature (2003. Warwick presented Fine with an Honorary Doctorate in 2005. Philip Gaydon’s interview with Anne Fine was recorded as part of the ‘Voices of the University’ oral history project, co-ordinated by Warwick’s Institute of Advanced Study.

  7. Fine genetic mapping of the white immature fruit color gene w to a 33.0-kb region in cucumber (Cucumis sativus L.).

    Science.gov (United States)

    Liu, Hanqiang; Meng, Huanwen; Pan, Yupeng; Liang, Xinjing; Jiao, Jianqing; Li, Yuhong; Chen, Shuxia; Cheng, Zhihui

    2015-12-01

    The white immature fruit color gene w was rapidly mapped to a 33.0-kb region to identify a valuable candidate gene that encodes peroxidase. The skin color of immature fruit is a crucial external trait of cucumbers, and white skin is shared by limited numbers of commercial cultivars. Herein, one BC1 population and two F2 segregating populations were constructed using four inbred parental lines (WD3 × B-2-2 and Q30 × Q24) to investigate the inheritance patterns and chromosomal locations of immature fruit color genes in cucumbers. Consequently, a single recessive gene, w, was identified that controls white immature fruit color. A total of 526 markers, which were derived from published genetic maps, two reference cucumber genomes ("9930" and GY14), and two parents (Q30 and Q24) for which whole-genome sequence information is available, were used to map the target gene w to a 33.0-kb region flanked by two SNP-based markers, ASPCR39262 and ASPCR39229, which are physically located at 39262450 and 39229482 of chromosome 3 ("9930" draft genome assembly), respectively. Gene prediction indicated that four potential genes were located in the target region. One gene that encodes peroxidase is likely to be a valuable candidate gene because quantitative real-time PCR revealed an eightfold difference in its transcriptional level, and several amino acid variations were found when the deduced amino acid sequence was aligned. A co-segregating marker was used synergistically to test its ability to predict the skin colors of 83 dark green/white germplasms, and the validity of its utility in marker-assisted selection was confirmed. Fine mapping of this locus will assist in cloning the gene and in marker-assisted breeding to develop dark green/white cucumber cultivars.

  8. Development of fine-leaved Festuca grass populations identified genetic resources having potential for improved forage production and wildfire control in the western United States

    Science.gov (United States)

    Drought and heat tolerant fine-leaved fescue (Festuca ssp.) grasses have potential as components in rangeland greenstrips for wildfire control in semi-arid climates. However, such fine-leaved grasses have been difficult to identify because of specific adaptations, lack of late maturity, and often p...

  9. Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.

    Science.gov (United States)

    Ng, Maggie C Y; Graff, Mariaelisa; Lu, Yingchang; Justice, Anne E; Mudgal, Poorva; Liu, Ching-Ti; Young, Kristin; Yanek, Lisa R; Feitosa, Mary F; Wojczynski, Mary K; Rand, Kristin; Brody, Jennifer A; Cade, Brian E; Dimitrov, Latchezar; Duan, Qing; Guo, Xiuqing; Lange, Leslie A; Nalls, Michael A; Okut, Hayrettin; Tajuddin, Salman M; Tayo, Bamidele O; Vedantam, Sailaja; Bradfield, Jonathan P; Chen, Guanjie; Chen, Wei-Min; Chesi, Alessandra; Irvin, Marguerite R; Padhukasahasram, Badri; Smith, Jennifer A; Zheng, Wei; Allison, Matthew A; Ambrosone, Christine B; Bandera, Elisa V; Bartz, Traci M; Berndt, Sonja I; Bernstein, Leslie; Blot, William J; Bottinger, Erwin P; Carpten, John; Chanock, Stephen J; Chen, Yii-Der Ida; Conti, David V; Cooper, Richard S; Fornage, Myriam; Freedman, Barry I; Garcia, Melissa; Goodman, Phyllis J; Hsu, Yu-Han H; Hu, Jennifer; Huff, Chad D; Ingles, Sue A; John, Esther M; Kittles, Rick; Klein, Eric; Li, Jin; McKnight, Barbara; Nayak, Uma; Nemesure, Barbara; Ogunniyi, Adesola; Olshan, Andrew; Press, Michael F; Rohde, Rebecca; Rybicki, Benjamin A; Salako, Babatunde; Sanderson, Maureen; Shao, Yaming; Siscovick, David S; Stanford, Janet L; Stevens, Victoria L; Stram, Alex; Strom, Sara S; Vaidya, Dhananjay; Witte, John S; Yao, Jie; Zhu, Xiaofeng; Ziegler, Regina G; Zonderman, Alan B; Adeyemo, Adebowale; Ambs, Stefan; Cushman, Mary; Faul, Jessica D; Hakonarson, Hakon; Levin, Albert M; Nathanson, Katherine L; Ware, Erin B; Weir, David R; Zhao, Wei; Zhi, Degui; Arnett, Donna K; Grant, Struan F A; Kardia, Sharon L R; Oloapde, Olufunmilayo I; Rao, D C; Rotimi, Charles N; Sale, Michele M; Williams, L Keoki; Zemel, Babette S; Becker, Diane M; Borecki, Ingrid B; Evans, Michele K; Harris, Tamara B; Hirschhorn, Joel N; Li, Yun; Patel, Sanjay R; Psaty, Bruce M; Rotter, Jerome I; Wilson, James G; Bowden, Donald W; Cupples, L Adrienne; Haiman, Christopher A; Loos, Ruth J F; North, Kari E

    2017-04-01

    Genome-wide association studies (GWAS) have identified >300 loci associated with measures of adiposity including body mass index (BMI) and waist-to-hip ratio (adjusted for BMI, WHRadjBMI), but few have been identified through screening of the African ancestry genomes. We performed large scale meta-analyses and replications in up to 52,895 individuals for BMI and up to 23,095 individuals for WHRadjBMI from the African Ancestry Anthropometry Genetics Consortium (AAAGC) using 1000 Genomes phase 1 imputed GWAS to improve coverage of both common and low frequency variants in the low linkage disequilibrium African ancestry genomes. In the sex-combined analyses, we identified one novel locus (TCF7L2/HABP2) for WHRadjBMI and eight previously established loci at P African ancestry individuals. An additional novel locus (SPRYD7/DLEU2) was identified for WHRadjBMI when combined with European GWAS. In the sex-stratified analyses, we identified three novel loci for BMI (INTS10/LPL and MLC1 in men, IRX4/IRX2 in women) and four for WHRadjBMI (SSX2IP, CASC8, PDE3B and ZDHHC1/HSD11B2 in women) in individuals of African ancestry or both African and European ancestry. For four of the novel variants, the minor allele frequency was low (African ancestry sex-combined and sex-stratified analyses, 26 BMI loci and 17 WHRadjBMI loci contained ≤ 20 variants in the credible sets that jointly account for 99% posterior probability of driving the associations. The lead variants in 13 of these loci had a high probability of being causal. As compared to our previous HapMap imputed GWAS for BMI and WHRadjBMI including up to 71,412 and 27,350 African ancestry individuals, respectively, our results suggest that 1000 Genomes imputation showed modest improvement in identifying GWAS loci including low frequency variants. Trans-ethnic meta-analyses further improved fine mapping of putative causal variants in loci shared between the African and European ancestry populations.

  10. Fine chemistry

    International Nuclear Information System (INIS)

    Laszlo, P.

    1988-01-01

    The 1988 progress report of the Fine Chemistry laboratory (Polytechnic School, France) is presented. The research programs are centered on the renewal of the organic chemistry most important reactions and on the invention of new, highly efficient and highly selective reactions, by applying low cost reagents and solvents. An important research domain concerns the study and fabrication of new catalysts. They are obtained by means of the reactive sputtering of the metals and metal oxydes thin films. The Monte Carlo simulations of the long-range electrostatic interaction in a clay and the obtention of acrylamides from anhydrous or acrylic ester are summarized. Moreover, the results obtained in the field of catalysis are also given. The published papers and the congress communications are included [fr

  11. Genetic characterization of Kyrgyzstan fine-leaved Festuca valesiaca germplasm for use in semi-arid low-maintenance turf applications

    Science.gov (United States)

    Fine-leaved Festuca valesiaca Shleidcher ex. Gaudin (2n = 2x-4x) is native to heavily grazed, cold, semi-arid, Asian rangelands. However, its potential for low-maintenance turf applications in the semi-arid western United States and its relatedness to other agriculturally important Festuca species ...

  12. Genetics

    Science.gov (United States)

    ... Likelihood of getting certain diseases Mental abilities Natural talents An abnormal trait (anomaly) that is passed down ... one of them has a genetic disorder. Information Human beings have cells with 46 chromosomes . These consist ...

  13. Fine-scale genetic breaks driven by historical range dynamics and ongoing density-barrier effects in the estuarine seaweed Fucus ceranoides L.

    Directory of Open Access Journals (Sweden)

    Neiva João

    2012-06-01

    Full Text Available Abstract Background Factors promoting the emergence of sharp phylogeographic breaks include restricted dispersal, habitat discontinuity, physical barriers, disruptive selection, mating incompatibility, genetic surfing and secondary contact. Disentangling the role of each in any particular system can be difficult, especially when species are evenly distributed across transition zones and dispersal barriers are not evident. The estuarine seaweed Fucus ceranoides provides a good example of highly differentiated populations along its most persistent distributional range at the present rear edge of the species distribution, in NW Iberia. Intrinsic dispersal restrictions are obvious in this species, but have not prevented F. ceranoides from vastly expanding its range northwards following the last glaciation, implying that additional factors are responsible for the lack of connectivity between neighbouring southern populations. In this study we analyze 22 consecutive populations of F. ceranoides along NW Iberia to investigate the processes generating and maintaining the observed high levels of regional genetic divergence. Results Variation at seven microsatellite loci and at mtDNA spacer sequences was concordant in revealing that Iberian F. ceranoides is composed of three divergent genetic clusters displaying nearly disjunct geographical distributions. Structure and AFC analyses detected two populations with an admixed nuclear background. Haplotypic diversity was high in the W sector and very low in the N sector. Within each genetic cluster, population structure was also pervasive, although shallower. Conclusions The deep divergence between sectors coupled with the lack of support for a role of oceanographic barriers in defining the location of breaks suggested 1 that the parapatric genetic sectors result from the regional reassembly of formerly vicariant sub-populations, and 2 that the genetic discontinuities at secondary contact zones (and elsewhere

  14. Relationships between population density, fine-scale genetic structure, mating system and pollen dispersal in a timber tree from African rainforests.

    Science.gov (United States)

    Duminil, J; Daïnou, K; Kaviriri, D K; Gillet, P; Loo, J; Doucet, J-L; Hardy, O J

    2016-03-01

    Owing to the reduction of population density and/or the environmental changes it induces, selective logging could affect the demography, reproductive biology and evolutionary potential of forest trees. This is particularly relevant in tropical forests where natural population densities can be low and isolated trees may be subject to outcross pollen limitation and/or produce low-quality selfed seeds that exhibit inbreeding depression. Comparing reproductive biology processes and genetic diversity of populations at different densities can provide indirect evidence of the potential impacts of logging. Here, we analysed patterns of genetic diversity, mating system and gene flow in three Central African populations of the self-compatible legume timber species Erythrophleum suaveolens with contrasting densities (0.11, 0.68 and 1.72 adults per ha). The comparison of inbreeding levels among cohorts suggests that selfing is detrimental as inbred individuals are eliminated between seedling and adult stages. Levels of genetic diversity, selfing rates (∼16%) and patterns of spatial genetic structure (Sp ∼0.006) were similar in all three populations. However, the extent of gene dispersal differed markedly among populations: the average distance of pollen dispersal increased with decreasing density (from 200 m in the high-density population to 1000 m in the low-density one). Overall, our results suggest that the reproductive biology and genetic diversity of the species are not affected by current logging practices. However, further investigations need to be conducted in low-density populations to evaluate (1) whether pollen limitation may reduce seed production and (2) the regeneration potential of the species.

  15. Landscape determinants of fine-scale genetic structure of a small rodent in a heterogeneous landscape (Hluhluwe-iMfolozi Park, South Africa).

    Science.gov (United States)

    Russo, Isa-Rita M; Sole, Catherine L; Barbato, Mario; von Bramann, Ullrich; Bruford, Michael W

    2016-07-13

    Small mammals provide ecosystem services, acting, for example, as pollinators and seed dispersers. In addition, they are also disease reservoirs that can be detrimental to human health and they can also act as crop pests. Knowledge of their dispersal preferences is therefore useful for population management and landscape planning. Genetic data were used alongside landscape data to examine the influence of the landscape on the demographic connectedness of the Natal multimammate mouse (Mastomys natalensis) and to identify landscape characteristics that influence the genetic structure of this species across a spatially and temporally varying environment. The most significant landscape features shaping gene flow were aspect, vegetation cover, topographic complexity (TC) and rivers, with western facing slopes, topographic complexity and rivers restricting gene flow. In general, thicket vegetation was correlated with increased gene flow. Identifying features of the landscape that facilitate movement/dispersal in M. natalensis potentially has application for other small mammals in similar ecosystems. As the primary reservoir host of the zoonotic Lassa virus, a landscape genetics approach may have applications in determining areas of high disease risk to humans. Identifying these landscape features may also be important in crop management due to damage by rodent pests.

  16. Genetics

    International Nuclear Information System (INIS)

    Hubitschek, H.E.

    1975-01-01

    Progress is reported on the following research projects: genetic effects of high LET radiations; genetic regulation, alteration, and repair; chromosome replication and the division cycle of Escherichia coli; effects of radioisotope decay in the DNA of microorganisms; initiation and termination of DNA replication in Bacillus subtilis; mutagenesis in mouse myeloma cells; lethal and mutagenic effects of near-uv radiation; effect of 8-methoxypsoralen on photodynamic lethality and mutagenicity in Escherichia coli; DNA repair of the lethal effects of far-uv; and near uv irradiation of bacterial cells

  17. Coevolutionary fine-tuning: evidence for genetic tracking between a specialist wasp parasitoid and its aphid host in a dual metapopulation interaction.

    Science.gov (United States)

    Nyabuga, F N; Loxdale, H D; Heckel, D G; Weisser, W W

    2012-04-01

    In the interaction between two ecologically-associated species, the population structure of one species may affect the population structure of the other. Here, we examine the population structures of the aphid Metopeurum fuscoviride, a specialist on tansy Tanacetum vulgare, and its specialist primary hymenopterous parasitoid Lysiphlebus hirticornis, both of which are characterized by multivoltine life histories and a classic metapopulation structure. Samples of the aphid host and the parasitoid were collected from eight sites in and around Jena, Germany, where both insect species co-occur, and then were genotyped using suites of polymorphic microsatellite markers. The host aphid was greatly differentiated in terms of its spatial population genetic patterning, while the parasitoid was, in comparison, only moderately differentiated. There was a positive Mantel test correlation between pairwise shared allele distance (DAS) of the host and parasitoid, i.e. if host subpopulation samples were more similar between two particular sites, so were the parasitoid subpopulation samples. We argue that while the differences in the levels of genetic differentiation are due to the differences in the biology of the species, the correlations between host and parasitoid are indicative of dependence of the parasitoid population structure on that of its aphid host. The parasitoid is genetically tracking behind the aphid host, as can be expected in a classic metapopulation structure where host persistence depends on a delay between host and parasitoid colonization of the patch. The results may also have relevance to the Red Queen hypothesis, whereupon in the 'arms race' between parasitoid and its host, the latter 'attempts' to evolve away from the former.

  18. Genetics

    DEFF Research Database (Denmark)

    Christensen, Kaare; McGue, Matt

    2016-01-01

    The sequenced genomes of individuals aged ≥80 years, who were highly educated, self-referred volunteers and with no self-reported chronic diseases were compared to young controls. In these data, healthy ageing is a distinct phenotype from exceptional longevity and genetic factors that protect...

  19. Fine mapping of genetic polymorphisms of pulmonary tuberculosis within chromosome 18q11.2 in the Chinese population: a case-control study

    Directory of Open Access Journals (Sweden)

    Dai Yaoyao

    2011-10-01

    Full Text Available Abstract Background Recently, one genome-wide association study identified a susceptibility locus of rs4331426 on chromosome 18q11.2 for tuberculosis in the African population. To validate the significance of this susceptibility locus in other areas, we conducted a case-control study in the Chinese population. Methods The present study consisted of 578 cases and 756 controls. The SNP rs4331426 and other six tag SNPs in the 100 Kbp up and down stream of rs4331426 on chromosome 18q11.2 were genotyped by using the Taqman-based allelic discrimination system. Results As compared with the findings from the African population, genetic variation of the SNP rs4331426 was rare among the Chinese. No significant differences were observed in genotypes or allele frequencies of the tag SNPs between cases and controls either before or after adjusting for age, sex, education, smoking, and drinking history. However, we observed strong linkage disequilibrium of SNPs. Constructed haplotypes within this block were linked the altered risks of tuberculosis. For example, in comparison with the common haplotype AA(rs8087945-rs12456774, haplotypes AG(rs8087945-rs12456774 and GA(rs8087945-rs12456774 were associated with a decreased risk of tuberculosis, with the adjusted odds ratio(95% confidence interval of 0.34(0.27-0.42 and 0.22(0.16-0.29, respectively. Conclusions Susceptibility locus of rs4331426 discovered in the African population could not be validated in the Chinese population. None of genetic polymorphisms we genotyped were related to tuberculosis in the single-point analysis. However, haplotypes on chromosome 18q11.2 might contribute to an individual's susceptibility. More work is necessary to identify the true causative variants of tuberculosis.

  20. Genetic analysis and fine mapping of RpsJS, a novel resistance gene to Phytophthora sojae in soybean [Glycine max (L.) Merr].

    Science.gov (United States)

    Sun, Jutao; Li, Lihong; Zhao, Jinming; Huang, Jing; Yan, Qiang; Xing, Han; Guo, Na

    2014-04-01

    We finely map a novel resistance gene ( RpsJS ) to Phytophthora sojae in soybean. RpsJS was mapped in 138.9 kb region, including three NBS-LRR type predicted genes, on chromosome 18. Phytophthora root rot (PRR) caused by Phytophthora sojae (P. sojae) has been reported in most soybean-growing regions throughout the world. Development of PRR resistance varieties is the most economical and environmentally safe method for controlling this disease. Chinese soybean line Nannong 10-1 is resistant to many P. sojae isolates, and shows different reaction types to P. sojae isolates as compared with those with known Rps (Resistance to P. sojae) genes, which suggests that the line may carry novel Rps genes or alleles. A mapping population of 231 F(2) individuals from the cross of Nannong 10-1 (Resistant, R) and 06-070583 (Susceptible, S) was used to map the Rps gene. The segregation fits a ratio of 3R:1S within F(2) plants, indicating that resistance in Nannong 10-1 is controlled by a single dominant gene (designated as RpsJS). The results showed that RpsJS was mapped on soybean chromosome 18 (molecular linkage group G, MLG G) flanked by SSR (simple repeat sequences) markers BARCSOYSSR_18_1859 and SSRG60752K at a distance of 0.9 and 0.4 cm, respectively. Among the 14 genes annotated in this 138.9 kb region between the two markers, three genes (Glyma18g51930, Glyma18g51950 and Glyma18g51960) are the nucleotide-binding site and a leucine-rich repeat (NBS-LRR) type gene, which may be involved in recognizing the presence of pathogens and ultimately conferring resistance. Based on marker-assisted resistance spectrum analyses of RpsJS and the mapping results, we inferred that RpsJS was a novel gene or a new allele at the Rps4, Rps5 or Rps6 loci.

  1. Fine-scale genetic mapping of a hybrid sterility factor between Drosophila simulans and D. mauritiana: the varied and elusive functions of "speciation genes"

    Directory of Open Access Journals (Sweden)

    Lemos Bernardo

    2010-12-01

    Full Text Available Abstract Background Hybrid male sterility (HMS is a usual outcome of hybridization between closely related animal species. It arises because interactions between alleles that are functional within one species may be disrupted in hybrids. The identification of genes leading to hybrid sterility is of great interest for understanding the evolutionary process of speciation. In the current work we used marked P-element insertions as dominant markers to efficiently locate one genetic factor causing a severe reduction in fertility in hybrid males of Drosophila simulans and D. mauritiana. Results Our mapping effort identified a region of 9 kb on chromosome 3, containing three complete and one partial coding sequences. Within this region, two annotated genes are suggested as candidates for the HMS factor, based on the comparative molecular characterization and public-source information. Gene Taf1 is partially contained in the region, but yet shows high polymorphism with four fixed non-synonymous substitutions between the two species. Its molecular functions involve sequence-specific DNA binding and transcription factor activity. Gene agt is a small, intronless gene, whose molecular function is annotated as methylated-DNA-protein-cysteine S-methyltransferase activity. High polymorphism and one fixed non-synonymous substitution suggest this is a fast evolving gene. The gene trees of both genes perfectly separate D. simulans and D. mauritiana into monophyletic groups. Analysis of gene expression using microarray revealed trends that were similar to those previously found in comparisons between whole-genome hybrids and parental species. Conclusions The identification following confirmation of the HMS candidate gene will add another case study leading to understanding the evolutionary process of hybrid incompatibility.

  2. Fine-scale genetic mapping of a hybrid sterility factor between Drosophila simulans and D. mauritiana: the varied and elusive functions of "speciation genes".

    Science.gov (United States)

    Araripe, Luciana O; Montenegro, Horácio; Lemos, Bernardo; Hartl, Daniel L

    2010-12-14

    Hybrid male sterility (HMS) is a usual outcome of hybridization between closely related animal species. It arises because interactions between alleles that are functional within one species may be disrupted in hybrids. The identification of genes leading to hybrid sterility is of great interest for understanding the evolutionary process of speciation. In the current work we used marked P-element insertions as dominant markers to efficiently locate one genetic factor causing a severe reduction in fertility in hybrid males of Drosophila simulans and D. mauritiana. Our mapping effort identified a region of 9 kb on chromosome 3, containing three complete and one partial coding sequences. Within this region, two annotated genes are suggested as candidates for the HMS factor, based on the comparative molecular characterization and public-source information. Gene Taf1 is partially contained in the region, but yet shows high polymorphism with four fixed non-synonymous substitutions between the two species. Its molecular functions involve sequence-specific DNA binding and transcription factor activity. Gene agt is a small, intronless gene, whose molecular function is annotated as methylated-DNA-protein-cysteine S-methyltransferase activity. High polymorphism and one fixed non-synonymous substitution suggest this is a fast evolving gene. The gene trees of both genes perfectly separate D. simulans and D. mauritiana into monophyletic groups. Analysis of gene expression using microarray revealed trends that were similar to those previously found in comparisons between whole-genome hybrids and parental species. The identification following confirmation of the HMS candidate gene will add another case study leading to understanding the evolutionary process of hybrid incompatibility.

  3. The Fine Structure Constant

    Indian Academy of Sciences (India)

    IAS Admin

    The article discusses the importance of the fine structure constant in quantum mechanics, along with the brief history of how it emerged. Al- though Sommerfelds idea of elliptical orbits has been replaced by wave mechanics, the fine struc- ture constant he introduced has remained as an important parameter in the field of ...

  4. Fine Arts Database (FAD)

    Data.gov (United States)

    General Services Administration — The Fine Arts Database records information on federally owned art in the control of the GSA; this includes the location, current condition and information on artists.

  5. Analyses of fine paste ceramics

    International Nuclear Information System (INIS)

    Sabloff, J.A.

    1980-01-01

    Four chapters are included: history of Brookhaven fine paste ceramics project, chemical and mathematical procedures employed in Mayan fine paste ceramics project, and compositional and archaeological perspectives on the Mayan fine paste ceramics

  6. Analyses of fine paste ceramics

    Energy Technology Data Exchange (ETDEWEB)

    Sabloff, J A [ed.

    1980-01-01

    Four chapters are included: history of Brookhaven fine paste ceramics project, chemical and mathematical procedures employed in Mayan fine paste ceramics project, and compositional and archaeological perspectives on the Mayan fine paste ceramics. (DLC)

  7. Imeilus Fine 5

    Index Scriptorium Estoniae

    2017-01-01

    Vaba Lava teatrikeskuse laval esineb Fine 5 oma lavastusega "Imeilus". Tiina Ollesk ja Renee Nõmmik, tantsulavastuse autorid on koreograafid, õppejõud, lavastajad ja kogemustega tantsijad. 29. jaanuaril korraldavad Tiina Ollesk ja Renee Nõmmik Tallinna Ülikoolis kaasaegse liikumismõtlemise töötoa, mis on pühendatud lavastusele "Imeilus"

  8. The Fine Dutch Tradition

    NARCIS (Netherlands)

    Hooimeijer, F.L.

    2012-01-01

    Publication of the exhibition and symposium on water adaptive urban planning and architecture in Bangkok. The Urban Fine Dutch Tradition is a dynamic tradition of making urban designs using the parameters of the natural system – incorperating in an efficient way the hydrological cycle, the soil and

  9. Transport of reservoir fines

    DEFF Research Database (Denmark)

    Yuan, Hao; Shapiro, Alexander; Stenby, Erling Halfdan

    Modeling transport of reservoir fines is of great importance for evaluating the damage of production wells and infectivity decline. The conventional methodology accounts for neither the formation heterogeneity around the wells nor the reservoir fines’ heterogeneity. We have developed an integral...

  10. A fine art

    Energy Technology Data Exchange (ETDEWEB)

    Schnabel, G.; Raaff, T. [Andritz AG (Austria)

    2006-07-15

    The paper describes a new dewatering system for coal fines which challenges established processes by using screenbowl centrifuge and hyperbaric filter combinations. Company acquisitions over the past three to four years enabled Andritz AG to develop a new system combining two technologies. The article describes the benefits of the combination process and explains the basic operation of these machines. 4 figs.

  11. Fine 5 lavastab Venemaal

    Index Scriptorium Estoniae

    2013-01-01

    Tantsuteatru Fine 5 koreograafid Tiina Ollesk ja Rene Nõmmik toovad Jekaterinburgis välja lavastuse "... and Red", esitajaks Venemaa nimekas nüüdistantsutrupp Provintsialnõje Tantsõ. Lavastuses kõlab Taavo Remmeli kontrabassiimprovisatsioon "12.12.2006"

  12. Fine target of deuterium

    International Nuclear Information System (INIS)

    Diaz Diaz, J.; Granados Gonzalez, C. E.; Gutierrez Bernal, R.

    1959-01-01

    A fine target of deuterium on a tantalum plate by the absorption method is obtained. In order to obtain the de gasification temperature an induction generator of high frequency is used and the deuterium pass is regulated by means of a palladium valve. Two vacuum measures are available, one to measure the high vacuum in the de gasification process of the tantalum plate and the other, for low vacuum, to measure the deuterium inlet in the installation and the deuterium pressure change in the installation after the absorption in the tantalum plate. A target of 48 μ gr/cm 2 thick is obtained. (Author) 1 refs

  13. Sahara Coal: the fine art of collecting fines for profit

    Energy Technology Data Exchange (ETDEWEB)

    Schreckengost, D.; Arnold, D.

    1984-09-01

    A considerable increase in the volume of fines in rom coal caused Sahara Coal in Illinois to redesign the fine coal system in their Harrisburg preparation plant. Details of the new design, and particularly the fine refuse system which dewaters and dries 28 mesh x O clean coal, are given. Results have exceeded expectations in reducing product losses, operating costs and slurry pond cleaning costs.

  14. Genetics Home Reference: nonbullous congenital ichthyosiform erythroderma

    Science.gov (United States)

    ... red (erythroderma) and covered with fine, white scales (ichthyosis). Infants with NBCIE may develop infections, an excessive ... 8 links) Genetic Testing Registry: Autosomal recessive congenital ichthyosis 2 Genetic Testing Registry: Autosomal recessive congenital ichthyosis ...

  15. Granulation of fine powder

    Science.gov (United States)

    Chen, Ching-Fong

    2016-08-09

    A mixture of fine powder including thorium oxide was converted to granulated powder by forming a first-green-body and heat treating the first-green-body at a high temperature to strengthen the first-green-body followed by granulation by crushing or milling the heat-treated first-green-body. The granulated powder was achieved by screening through a combination of sieves to achieve the desired granule size distribution. The granulated powder relies on the thermal bonding to maintain its shape and structure. The granulated powder contains no organic binder and can be stored in a radioactive or other extreme environment. The granulated powder was pressed and sintered to form a dense compact with a higher density and more uniform pore size distribution.

  16. Radiology and fine art.

    Science.gov (United States)

    Marinković, Slobodan; Stošić-Opinćal, Tatjana; Tomić, Oliver

    2012-07-01

    The radiologic aesthetics of some body parts and internal organs have inspired certain artists to create specific works of art. Our aim was to describe the link between radiology and fine art. We explored 13,625 artworks in the literature produced by 2049 artists and found several thousand photographs in an online image search. The examination revealed 271 radiologic artworks (1.99%) created by 59 artists (2.88%) who mainly applied radiography, sonography, CT, and MRI. Some authors produced radiologic artistic photographs, and others used radiologic images to create artful compositions, specific sculptures, or digital works. Many radiologic artworks have symbolic, metaphoric, or conceptual connotations. Radiology is clearly becoming an original and important field of modern art.

  17. Fine mapping and genetic association analysis of Net2, the causative D-genome locus of low temperature-induced hybrid necrosis in interspecific crosses between tetraploid wheat and Aegilops tauschii.

    Science.gov (United States)

    Sakaguchi, Kouhei; Nishijima, Ryo; Iehisa, Julio Cesar Masaru; Takumi, Shigeo

    2016-10-01

    Hybrid necrosis has been observed in many interspecific hybrids from crosses between tetraploid wheat and the wheat D-genome donor Aegilops tauschii. Type II necrosis is a kind of hybrid incompatibility that is specifically characterized by low-temperature induction and growth suppression. Two complementary genes, Net1 on the AB genome and Net2 on the D genome, putatively control type II necrosis in ABD triploids and synthetic hexaploid wheat. Toward map-based cloning of Net2, a fine map around the Net2 region on 2DS was constructed in this study. Using the draft genome sequence of Ae. tauschii and the physical map of the barley genome, the Net2 locus was mapped within a 0.6 cM interval between two closely linked markers. Although local chromosomal rearrangements were observed in the Net2-corresponding region between the barley/Brachypodium and Ae. tauschii genomes, the two closely linked markers were significantly associated with type II necrosis in Ae. tauschii. These results suggest that these markers will aid efficient selection of Net2 non-carrier individuals from the Ae. tauschii population and intraspecific progeny, and could help with introgression of agriculturally important genes from Ae. tauschii to common wheat.

  18. Fine motor skills in children with Down syndrome

    Directory of Open Access Journals (Sweden)

    Memišević Haris

    2014-01-01

    Full Text Available Fine motor skills are very important for children's overall functioning. Their development is necessary for many everyday activities such as dressing, feeding, holding objects, etc. Moreover, fine motor skills are also correlated to the children's academic success at school. Recent research suggests a close relationship between motor skills and intelligence. Given the relative paucity of literature on fine motor skills in different etiological groups of children with intellectual disability (ID, we examined these skills in children with Down syndrome. The sample for this study comprised 90 children with ID, aged 7-15, who were divided in three etiological groups: 1. Down syndrome, 2. Organic/other genetic cause of ID and 3. Unknown etiology of ID. Fine motor skills were assessed by the Purdue Pegboard Test. The results of this study indicate that children with Down syndrome did not differ statistically significantly from the other two etiological groups. On the other hand, children with unknown etiology of ID performed statistically better than children with organic/other genetic cause of ID. An additional goal was to examine fine motor skills in children with Down syndrome in relation to the child's sex. There were no statistically significant differences in fine motor skills between girls and boys with Down syndrome. It is important to provide children with Down syndrome, and all other children with ID, with early (rehabilitation programs for the improvement of their fine motor skills. Special educators and rehabilitators should play a crucial role in the assessment and in creating programs for the development of these skills.

  19. Fine 5 kolib Kumu lavale

    Index Scriptorium Estoniae

    2006-01-01

    Kumu kunstimuuseumi auditooriumis toimub 21. veebruaril Fine 5 kaasaegse tantsu etendus "Panus". Esinevad Tiina Ollesk, Irina Pähn, žonglöör Dimitri Kruus, disainer Rain Saukas ja muusik Mattias Siitan

  20. Nitramine Drying & Fine Grinding Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The Nitramine Drying and Fine Grinding Facility provides TACOM-ARDEC with a state-of-the-art facility capable of drying and grinding high explosives (e.g., RDX and...

  1. Finely divided, irradiated tetrafluorethylene polymers

    International Nuclear Information System (INIS)

    Brown, M.T.; Rodway, W.G.

    1977-01-01

    Dry non-sticky fine lubricant powders are made by γ-irradiation of unsintered coagulated dispersion grade tetrafluoroethylene polymers. These powders may also be dispersed in an organic medium for lubricating purposes

  2. Making of polymer fine particles

    International Nuclear Information System (INIS)

    Ono, Isamu

    1990-01-01

    The polymer particles having spherical shape and uniform grain diameter are applied to various fields such as powder coating, cosmetics, medicines, foods and others. These polymer fine particles are synthesized from monomers at the temperature higher than room temperature by emulsifying polymerization, suspension polymerization or dispersion polymerization, using polymerization initiator. The diameter of such synthesized fine particles is from 0.1 to 10 μm. In this study, the method of synthesizing polymer fine particles by dispersion radiation polymerization process without using polymerization initiator and emulsifying agent was examined. Monomers are dissolved in the solvent, in which monomers are soluble but polymers are insoluble, and by polymerizing with radiation, polymer fine particles are synthesized. It has the merits that additive agents are not contained, and the synthesis can be done at room temperature. The method and the results are reported. As the mechanism of forming fine particles, the reaction of beginning polymerization and the precipitation of polymers are explained. By controlling reaction temperature and monomer concentration, particle diameter can be adjusted. The monomers used were styrene, methyl metacrylate and vinyl acetate. (K.I.)

  3. Fine mapping of gene regions regulating neurodegeneration.

    Directory of Open Access Journals (Sweden)

    Maria Swanberg

    Full Text Available BACKGROUND: Damage to nerve cells and axons leading to neurodegeneration is a characteristic feature of many neurological diseases. The degree of genetic influence on susceptibility to axotomy-induced neuronal death has so far been unknown. We have examined two gene regions, Vra1 and Vra2, previously linked to nerve cell loss after ventral root avulsion in a rat F2 intercross between the DA and PVG inbred rat strains. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we use two generations (G8 and G10 cohorts of an advanced intercross line between DA and PVG(av1 to reproduce linkage to Vra1 and to fine-map this region. By isolating the effect from Vra1 in congenic strains, we demonstrate that Vra1 significantly regulates the loss of motoneurons after avulsion. The regulatory effect mediated by Vra1 thus resides in a congenic fragment of 9 megabases. Furthermore, we have used the advanced intercross lines to give more support to Vra2, originally detected as a suggestive QTL. CONCLUSIONS/SIGNIFICANCE: The results demonstrated here show that naturally occurring allelic variations affect susceptibility to axotomy-induced nerve cell death. Vra1 and Vra2 represent the first quantitative trait loci regulating this phenotype that are characterized and fine mapped in an advanced intercross line. In addition, congenic strains provide experimental evidence for the Vra1 effect on the extent of injury-induced neurodegeneration. Identification of the underlying genetic variations will increase our understanding of the regulation and mechanisms of neurodegeneration.

  4. The care of fine books

    CERN Document Server

    Greenfield, Jane; Basbanes, Nicholas A

    2014-01-01

    The Care of Fine Books is a thorough, readable guide to caring for books of value. From a discussion of the various techniques and materials used in bookbinding to advice on handling and storage, Jane Greenfield has created a succinct yet complete resource for anyone who wants to preserve and protect their fine books. Whether you are a collector, a librarian, or a conservation professional, you will benefit from this expert advice. Learn about appropriate levels of light, temperature, relative humidity, and pollution; how to secure a collection against fire, insect infestation, flood, and theft; and methods for cleaning and repairing books that have already been damaged. Always practical and amply illustrated, this is a must-have reference for anyone who loves fine books.

  5. Sahara Coal: the fine art of collecting fines for profit

    Energy Technology Data Exchange (ETDEWEB)

    Schreckengost, D.; Arnold, D.

    1984-09-01

    Because of a change in underground mining methods that caused a considerable increase in the amount of fine sizes in the raw coal, Sahara Coal Co. designed and constructed a unique and simple fine coal system at their Harrisburg, IL prep plant. Before the new system was built, the overload of the fine coal circuit created a cost crunch due to loss of salable coal to slurry ponds, slurry pond cleaning costs, and operating and maintenance costs--each and every one excessive. Motivated by these problems, Sahara designed a prototype system to dewater the minus 28 mesh refuse. The success of the idea permitted fine refuse to be loaded onto the coarse refuse belt. Sahara also realized a large reduction in pond cleaning costs. After a period of testing, an expanded version of the refuse system was installed to dewater and dry the 28 mesh X 0 clean coal. Clean coal output increased about 30 tph. Cost savings justified the expenditures for the refuse and clean coal systems. These benefits, combined with increased coal sales revenue, paid back the project costs in less than a year.

  6. Comparision of Fine Needle Aspiration Cytology and Fine Needle ...

    African Journals Online (AJOL)

    Background: Open biopsy of the breast used to be the main traditional method of diagnosis of breast lumps. Fine Needle Aspiration Cytology (FNAC) was later introduced which depends on suction and thus yields hemorrhagic material for cytological study.This study was undertaken to find out if there is a difference in ...

  7. Compressive behavior of fine sand.

    Energy Technology Data Exchange (ETDEWEB)

    Martin, Bradley E. (Air Force Research Laboratory, Eglin, FL); Kabir, Md. E. (Purdue University, West Lafayette, IN); Song, Bo; Chen, Wayne (Purdue University, West Lafayette, IN)

    2010-04-01

    The compressive mechanical response of fine sand is experimentally investigated. The strain rate, initial density, stress state, and moisture level are systematically varied. A Kolsky bar was modified to obtain uniaxial and triaxial compressive response at high strain rates. A controlled loading pulse allows the specimen to acquire stress equilibrium and constant strain-rates. The results show that the compressive response of the fine sand is not sensitive to strain rate under the loading conditions in this study, but significantly dependent on the moisture content, initial density and lateral confinement. Partially saturated sand is more compliant than dry sand. Similar trends were reported in the quasi-static regime for experiments conducted at comparable specimen conditions. The sand becomes stiffer as initial density and/or confinement pressure increases. The sand particle size become smaller after hydrostatic pressure and further smaller after dynamic axial loading.

  8. Generator of fine polydisperse aerosol

    Czech Academy of Sciences Publication Activity Database

    Mikuška, Pavel

    2004-01-01

    Roč. 69, č. 7 (2004), s. 1453-1463 ISSN 0010-0765 R&D Projects: GA AV ČR IAA4031105; GA ČR GA203/98/0943 Grant - others:INCO COPERNICUS(BE) SUB AERO-EVK2-CT-1999-0052 Institutional research plan: CEZ:AV0Z4031919 Keywords : aerosol generator * polydisperse aerosol * fine aerosol Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 1.062, year: 2004

  9. Observations of substorm fine structure

    Directory of Open Access Journals (Sweden)

    L. L. Lazutin

    1998-07-01

    Full Text Available Particle and magnetic field measurements on the CRRES satellite were used, together with geosynchronous satellites and ground-based observations, to investigate the fine structure of a magnetospheric substorm on February 9, 1991. Using the variations in the electron fluxes, the substorm activity was divided into several intensifications lasting about 3–15 minutes each. The two main features of the data were: (1 the intensifications showed internal fine structure in the time scale of about 2 minutes or less. We call these shorter periods activations. Energetic electrons and protons at the closest geosynchronous spacecraft (1990 095 were found to have comparable activation structure. (2 The energetic (>69 keV proton injections were delayed with respect to electron injections, and actually coincided in time with the end of the intensifications and partial returns to locally more stretched field line configuration. We propose that the energetic protons could be able to control the dynamics of the system locally be quenching the ongoing intensification and possibly preparing the final large-scale poleward movement of the activity. It was also shown that these protons originated from the same intensification as the preceeding electrons. Therefore, the substorm instability responsible for the intensifications could introduce a negative feedback loop into the system, creating the observed fine structure with the intensification time scales.Key words. Magnetospheric Physics (Storms and substorms.

  10. CDC WONDER: Daily Fine Particulate Matter

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Daily Fine Particulate Matter data available on CDC WONDER are geographically aggregated daily measures of fine particulate matter in the outdoor air, spanning...

  11. Fine-scale genetic characterization of Plasmodium falciparum

    Indian Academy of Sciences (India)

    We have initiated such a study and presented herewith the results from the in silico understanding of a seventh chromosomal region of the malarial parasite Plasmodium falciparum encompassing the antigenic var genes (coding pfemp1) and the drug-resistant gene pfcrt located at a specified region of the chromosome 7.

  12. Cacao Flavor through Genetics – Anatomy of Fine Flavor

    Science.gov (United States)

    This presentation will discuss the transcript analysis of Moniliophthora roreri infected pods, which revealed a total of 3009 differentially expressed transcripts among resistant and susceptible clones. Comparison of the tolerant and susceptible clones by KEGG (Kyoto Encyclopedia of Genes and Genome...

  13. Fine-scale genetic characterization of Plasmodium falciparum ...

    Indian Academy of Sciences (India)

    RUCHI BAJAJ1, SUJATA MOHANTY2, A. P. DASH1 and APARUP DAS1, ∗. 1Evolutionary Genomics and Bioinformatics Laboratory, National Institute of Malaria Research,. 22 Sham Nath Marg, New Delhi 110 054, India. 2Department of Biotechnology, Jaypee Institute of Information Technology University, A-10,. Sector 62 ...

  14. Considering Fine Art and Picture Books

    Science.gov (United States)

    Serafini, Frank

    2015-01-01

    There has been a close association between picturebook illustrations and works of fine art since the picturebook was first conceived, and many ways these associations among works of fine art and picturebook illustrations and design play out. To make sense of all the various ways picturebook illustrations are associated with works of fine art,…

  15. 36 CFR 910.35 - Fine arts.

    Science.gov (United States)

    2010-07-01

    ... 36 Parks, Forests, and Public Property 3 2010-07-01 2010-07-01 false Fine arts. 910.35 Section 910... DEVELOPMENT AREA Standards Uniformly Applicable to the Development Area § 910.35 Fine arts. Fine arts... of art which are appropriate for the development. For information and guidance, a reasonable...

  16. Sexual recombination in Colletotrichum lindemuthianum occurs on a fine scale.

    Science.gov (United States)

    Souza, E A; Camargo, O A; Pinto, J M A

    2010-09-08

    Glomerella cingulata f. sp phaseoli is the sexual phase of the fungus Colletotrichum lindemuthianum, the causal agent of common bean anthracnose. This fungus is of great concern, because it causes large economic losses in common bean crops. RAPD markers of five populations of G. cingulata f. sp phaseoli from two Brazilian states were analyzed to determine if this population possesses the sexual reproductive potential to generate the genetic variation that is observed in this phytopathogen. We identified 128 polymorphic bands, amplified by 28 random primers. The estimates of genetic similarity in this analysis ranged from 0.43 to 1.00, and the dendrogram generated from analysis of all genotypes displayed five principal groups, coinciding with the five populations. Genetic differentiation was observed between the populations (GST=0.6455); 69% of the overall observed genetic variation was between individual populations and 31% of the variance was within the sub-populations. We identified significant levels of linkage disequilibrium in all populations. However, the values of the disequilibrium ranged from low to moderate, indicating that this pathogen maintains a genetic structure consistent with sexual reproduction. The mean contribution of sexual reproduction was determined by comparison of the amplitudes of genetic similarity of isolates from sexual and asexual phases. These results support the hypothesis that recombination plays an important role in determining the amplitude of variability in this pathogen population and that this determination occurs on a fine scale.

  17. The international fine aerosol networks

    International Nuclear Information System (INIS)

    Cahill, T.A.

    1993-01-01

    The adoption by the United States of a PIXE-based protocol for its fine aerosol network, after open competitions involving numerous laboratories and methods, has encouraged cooperation with other countries possessing similar capabilities and similar needs. These informal cooperative programs, involving about a dozen countries at the end of 1991, almost all use PIXE as a major component of the analytical protocols. The University of California, Davis, Air Quality Group assisted such programs through indefinite loans of a quality assurance sampler, the IMPROVE Channel A, and analyses at no cost of a small fraction of the samples taken in a side-by-side configuration. In December 1991, the World Meteorological Organization chose a protocol essentially identical to IMPROVE for the Global Atmospheric Watch (GAW) network and began deploying units, the IMPROVE Channel A, to sites around the world. Preferred analyses include fine (less than about 2.5 μm) mass, ions by ion chromatography, and elements by PIXE-PESA (or, lacking that, XRF). This paper will describe progress in both programs, giving examples of the utility of the data, and projecting the future expansion of the network to about 20 GAW sites by 1994. (orig.)

  18. Cleaning and dewatering fine coal

    Energy Technology Data Exchange (ETDEWEB)

    Yoon, Roe-Hoan; Eraydin, Mert K.; Freeland, Chad

    2017-10-17

    Fine coal is cleaned of its mineral matter impurities and dewatered by mixing the aqueous slurry containing both with a hydrophobic liquid, subjecting the mixture to a phase separation. The resulting hydrophobic liquid phase contains coal particles free of surface moisture and droplets of water stabilized by coal particles, while the aqueous phase contains the mineral matter. By separating the entrained water droplets from the coal particles mechanically, a clean coal product of substantially reduced mineral matter and moisture contents is obtained. The spent hydrophobic liquid is separated from the clean coal product and recycled. The process can also be used to separate one type of hydrophilic particles from another by selectively hydrophobizing one.

  19. Fine-Mapping the HOXB Region Detects Common Variants Tagging a Rare Coding Allele

    DEFF Research Database (Denmark)

    Saunders, Edward J; Dadaev, Tokhir; Leongamornlert, Daniel A

    2014-01-01

    The HOXB13 gene has been implicated in prostate cancer (PrCa) susceptibility. We performed a high resolution fine-mapping analysis to comprehensively evaluate the association between common genetic variation across the HOXB genetic locus at 17q21 and PrCa risk. This involved genotyping 700 SNPs...

  20. Remelting of metallurgical fines using thermal plasma

    International Nuclear Information System (INIS)

    Vicente, L.C.; Neto F, J.B.F.; Bender, O.W.; Collares, M.P.

    1992-01-01

    A plasma furnace was developed for remelting of ferro alloys and silicon fines. The furnace capacity was about 4 Kg of silicon and power about 50 kW. The fine (20 to 100 mesh) was fed into the furnace directly at the high temperature zone. This system was tested for remelting silicon fines and the results in the recovery of silicon was about 95% and it took place a refine of aluminium and calcium. (author)

  1. On Basu's proposal: Fines affect bribes

    OpenAIRE

    Popov, Sergey V.

    2017-01-01

    I model the connection between the equilibrium bribe amount and the fines imposed on both bribe-taker and bribe-payer. I show that Basu's (2011) proposal to lower the fines imposed on bribe-payers in order to induce more whistleblowing and increase the probability of penalizing corrupt government officials might instead increase bribe amounts. Higher expected fines on bribe-takers will make them charge larger bribes; at the same time, lowering fines for bribe-paying might increase bribe-payer...

  2. Advanced Fine Particulate Characterization Methods

    Energy Technology Data Exchange (ETDEWEB)

    Steven Benson; Lingbu Kong; Alexander Azenkeng; Jason Laumb; Robert Jensen; Edwin Olson; Jill MacKenzie; A.M. Rokanuzzaman

    2007-01-31

    The characterization and control of emissions from combustion sources are of significant importance in improving local and regional air quality. Such emissions include fine particulate matter, organic carbon compounds, and NO{sub x} and SO{sub 2} gases, along with mercury and other toxic metals. This project involved four activities including Further Development of Analytical Techniques for PM{sub 10} and PM{sub 2.5} Characterization and Source Apportionment and Management, Organic Carbonaceous Particulate and Metal Speciation for Source Apportionment Studies, Quantum Modeling, and High-Potassium Carbon Production with Biomass-Coal Blending. The key accomplishments included the development of improved automated methods to characterize the inorganic and organic components particulate matter. The methods involved the use of scanning electron microscopy and x-ray microanalysis for the inorganic fraction and a combination of extractive methods combined with near-edge x-ray absorption fine structure to characterize the organic fraction. These methods have direction application for source apportionment studies of PM because they provide detailed inorganic analysis along with total organic and elemental carbon (OC/EC) quantification. Quantum modeling using density functional theory (DFT) calculations was used to further elucidate a recently developed mechanistic model for mercury speciation in coal combustion systems and interactions on activated carbon. Reaction energies, enthalpies, free energies and binding energies of Hg species to the prototype molecules were derived from the data obtained in these calculations. Bimolecular rate constants for the various elementary steps in the mechanism have been estimated using the hard-sphere collision theory approximation, and the results seem to indicate that extremely fast kinetics could be involved in these surface reactions. Activated carbon was produced from a blend of lignite coal from the Center Mine in North Dakota and

  3. Kepler Fine Guidance Sensor Data

    Science.gov (United States)

    Van Cleve, Jeffrey; Campbell, Jennifer Roseanna

    2017-01-01

    The Kepler and K2 missions collected Fine Guidance Sensor (FGS) data in addition to the science data, as discussed in the Kepler Instrument Handbook (KIH, Van Cleve and Caldwell 2016). The FGS CCDs are frame transfer devices (KIH Table 7) located in the corners of the Kepler focal plane (KIH Figure 24), which are read out 10 times every second. The FGS data are being made available to the user community for scientific analysis as flux and centroid time series, along with a limited number of FGS full frame images which may be useful for constructing a World Coordinate System (WCS) or otherwise putting the time series data in context. This document will describe the data content and file format, and give example MATLAB scripts to read the time series. There are three file types delivered as the FGS data.1. Flux and Centroid (FLC) data: time series of star signal and centroid data. 2. Ancillary FGS Reference (AFR) data: catalog of information about the observed stars in the FLC data. 3. FGS Full-Frame Image (FGI) data: full-frame image snapshots of the FGS CCDs.

  4. 47 CFR 76.943 - Fines.

    Science.gov (United States)

    2010-10-01

    ... TELEVISION SERVICE Cable Rate Regulation § 76.943 Fines. (a) A franchising authority may impose fines or... specifically at the cable operator, provided the franchising authority has such power under state or local laws. (b) If a cable operator willfully fails to comply with the terms of any franchising authority's order...

  5. Population Genetic Structure and Connectivity of the Abundant Sea ...

    African Journals Online (AJOL)

    The aim of this study was to examine the fine-scale genetic structure and connectivity in the sea urchin, Diadema setosum, population around Unguja, Zanzibar, using AFLP. We found evidence of different genetic clusters, high migration between the sites and high genetic diversity within the sites. These findings indicate ...

  6. Charge neutrality of fine particle (dusty) plasmas and fine particle cloud under gravity

    Energy Technology Data Exchange (ETDEWEB)

    Totsuji, Hiroo, E-mail: totsuji-09@t.okadai.jp

    2017-03-11

    The enhancement of the charge neutrality due to the existence of fine particles is shown to occur generally under microgravity and in one-dimensional structures under gravity. As an application of the latter, the size and position of fine particle clouds relative to surrounding plasmas are determined under gravity. - Highlights: • In fine particle (dusty) plasmas, the charge neutrality is much enhanced by the existence of fine particles. • The enhancement of charge neutrality generally occurs under microgravity and gravity. • Structure of fine particle clouds under gravity is determined by applying the enhanced charge neutrality.

  7. Paste mechanics for fine extrusion

    Science.gov (United States)

    Hurysz, Kevin Michael

    compositional range; (5) Shear zone behavior, and the influence and limitations the shear layer places on fine extrusion.

  8. Human fine body hair enhances ectoparasite detection.

    Science.gov (United States)

    Dean, Isabelle; Siva-Jothy, Michael T

    2012-06-23

    Although we are relatively naked in comparison with other primates, the human body is covered in a layer of fine hair (vellus and terminal hair) at a relatively high follicular density. There are relatively few explanations for the evolutionary maintenance of this type of human hair. Here, we experimentally test the hypothesis that human fine body hair plays a defensive function against ectoparasites (bed bugs). Our results show that fine body hair enhances the detection of ectoparasites through the combined effects of (i) increasing the parasite's search time and (ii) enhancing its detection.

  9. A Structure-Based Coarse-Fine Approach for Diversity Tuning in Cellular GAs

    Directory of Open Access Journals (Sweden)

    MORALES-REYES, A.

    2012-08-01

    Full Text Available This article empirically assesses a coarse-fine approach for diversity tuning in cellular Genetic Algorithms (cGAs. The coarse tuning is performed through the constant reconfiguration of the grid while the fine tuning is locally achieved through dynamic anisotropic selection which considers individuals' locations in the local neighborhood. Benchmark problems including continuous, real-world and combinatorial problems are evaluated. The experimental results show an improvement in cGAs performance when compared to having a fixed topology configuration or to independently applying dynamic lattice reconfiguration or dynamic anisotropic.

  10. NEW RSW & Wall Fine Fully Tetrahedral Grid

    Data.gov (United States)

    National Aeronautics and Space Administration — NEW RSW Fine Fully Tetrahedral Grid with Viscous Wind Tunnel wall at the root. This grid is for a node-based unstructured solver. Note that the CGNS file is very...

  11. NEW RSW & Wall Fine Mixed Element Grid

    Data.gov (United States)

    National Aeronautics and Space Administration — RSW Fine Mixed Element Grid with viscous root wind tunnel wall. This grid is for a node-based unstructured solver. Quad Surface Faces= 38016 Tria Surface Faces=...

  12. Approximation properties of fine hyperbolic graphs

    Indian Academy of Sciences (India)

    is called the metric invariant translation approximation property for a countable dis- crete metric space. Moreover ... Uniform Roe algebras; fine hyperbolic graph; metric invariant translation approximation property. ..... ate Studies in Mathematics, Volume 88 (2008) (Rhode Island: American Mathematical. Society Providence).

  13. Immobilization of Rocky Flats Graphite Fines Residue

    International Nuclear Information System (INIS)

    Rudisill, T.S.

    1999-01-01

    The development of the immobilization process for graphite fines has proceeded through a series of experimental programs. The experimental procedures and results from each series of experiments are discussed in this report

  14. Ultrasound guided percutaneous fine needle aspiration biopsy ...

    African Journals Online (AJOL)

    2011-06-15

    )-guided percutaneous fine needle aspiration biopsy (PFNAB)/US-guided percutaneous needle core biopsy (PNCB) of abdominal lesions is efficacious in diagnosis, is helpful in treatment choice, to evaluate whether various ...

  15. Ultrasound guided percutaneous fine needle aspiration biopsy ...

    African Journals Online (AJOL)

    )-guided percutaneous fine needle aspiration biopsy (PFNAB)/US-guided percutaneous needle core biopsy (PNCB) of abdominal lesions is efficacious in diagnosis, is helpful in treatment choice, to evaluate whether various other investigations ...

  16. Fine 5 Eesti tantsuväljal / Iiris Viirpalu

    Index Scriptorium Estoniae

    Viirpalu, Iiris, 1992-

    2017-01-01

    Nüüdistantsuteatril Fine 5 täitub tänavu 25. tegutsemisaasta. Fine 5 käekirjast. Vestlusest Fine 5 tantsuteatri ja -kooli kauaaegsete kunstiliste juhtide Renee Nõmmiku ja Tiina Olleskiga Eesti tantsukunstist

  17. Pelletization of fine coals. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Sastry, K.V.S.

    1995-12-31

    Coal is one of the most abundant energy resources in the US with nearly 800 million tons of it being mined annually. Process and environmental demands for low-ash, low-sulfur coals and economic constraints for high productivity are leading the coal industry to use such modern mining methods as longwall mining and such newer coal processing techniques as froth flotation, oil agglomeration, chemical cleaning and synthetic fuel production. All these processes are faced with one common problem area--fine coals. Dealing effectively with these fine coals during handling, storage, transportation, and/or processing continues to be a challenge facing the industry. Agglomeration by the unit operation of pelletization consists of tumbling moist fines in drums or discs. Past experimental work and limited commercial practice have shown that pelletization can alleviate the problems associated with fine coals. However, it was recognized that there exists a serious need for delineating the fundamental principles of fine coal pelletization. Accordingly, a research program has been carried involving four specific topics: (i) experimental investigation of coal pelletization kinetics, (ii) understanding the surface principles of coal pelletization, (iii) modeling of coal pelletization processes, and (iv) simulation of fine coal pelletization circuits. This report summarizes the major findings and provides relevant details of the research effort.

  18. Polygamy and an absence of fine-scale structure in Dendroctonus ponderosae (Hopk.) (Coleoptera: Curcilionidae) confirmed using molecular markers.

    Science.gov (United States)

    Janes, J K; Roe, A D; Rice, A V; Gorrell, J C; Coltman, D W; Langor, D W; Sperling, F A H

    2016-01-01

    An understanding of mating systems and fine-scale spatial genetic structure is required to effectively manage forest pest species such as Dendroctonus ponderosae (mountain pine beetle). Here we used genome-wide single-nucleotide polymorphisms to assess the fine-scale genetic structure and mating system of D. ponderosae collected from a single stand in Alberta, Canada. Fine-scale spatial genetic structure was absent within the stand and the majority of genetic variation was best explained at the individual level. Relatedness estimates support previous reports of pre-emergence mating. Parentage assignment tests indicate that a polygamous mating system better explains the relationships among individuals within a gallery than the previously reported female monogamous/male polygynous system. Furthermore, there is some evidence to suggest that females may exploit the galleries of other females, at least under epidemic conditions. Our results suggest that current management models are likely to be effective across large geographic areas based on the absence of fine-scale genetic structure.

  19. New methods and standards for fine dust

    International Nuclear Information System (INIS)

    Spielvogel, Juergen; Hartstock, Stefan; Grimm, Hans

    2009-01-01

    There seems to be common agreement that PM10 is a suboptimal quantity for the quantification of potential dangers from fine dust due to a number of reasons, notably because the chemical composition of the particles is not considered, because the size distribution is disregarded, and because of sampling artefacts. In a first step for improving the particle measurements, the European Community has published new directives for ambient air in June 2008 (EU 2008), which as a main part included new regulations for PM2.5 measurements, in addition to the further on valid regulations for PM10. The comparison of PM2.5 and PM10 may allow a source apportionment and a better assessment of the influence of fine dust on human health. The source apportionment may allow more effective fine dust reduction strategies.

  20. Towards gloss control in fine art reproduction

    Science.gov (United States)

    Baar, Teun; Brettel, Hans; Ortiz Segovia, Maria V.

    2015-03-01

    The studies regarding fine art reproduction mainly focus on the accuracy of colour and the recreation of surface texture properties. Since reflection properties other than colour are neglected, important details of the artwork are lost. For instance, gloss properties, often characteristic to painters and particular movements in the history of art, are not well reproduced. The inadequate reproduction of the different gloss levels of a piece of fine art leads to a specular reflection mismatch in printed copies with respect to the original works that affects the perceptual quality of the printout. We used different print parameters of a 3D high resolution printing setup to control the gloss level on a printout locally. Our method can be used to control gloss automatically and in crucial applications such as fine art reproduction.

  1. Edge separation using diffraction anomalous fine structure

    International Nuclear Information System (INIS)

    Ravel, B.; Bouldin, C.E.; Renevier, H.; Hodeau, J.L.; Berar, J.F.

    1999-01-01

    We exploit the crystallographic sensitivity of the Diffraction Anomalous Fine-Structure (DAFS) measurement to separate the fine structure contributions of different atomic species with closely spaced resonant energies. In BaTiO 3 the Ti K edge and Ba Lm edges are separated by 281 eV, or about 8.2 Angstrom -1 ), thus severely limiting the information content of the Ti K edge signal. Using the site selectivity of DAFS we can separate the two fine structure spectra using an iterative Kramers-Kronig method, thus extending the range of the Ti K edge spectrum. This technique has application to many rare earth/transition metal compounds, including many magnetic materials of technological significance for which K and L edges overlap in energy. (au)

  2. 28 CFR 571.52 - Procedures-committed fines.

    Science.gov (United States)

    2010-07-01

    ... the inmate's commitment, staff shall inform the inmate that there is a committed fine, or fine and costs on file, as part of the sentence. Staff shall then impound the inmate's trust fund account until the fine, or fine and costs is paid, except— (i) The inmate may spend money from his/her trust fund...

  3. Fine-grained concrete with organomineral additive

    Directory of Open Access Journals (Sweden)

    Solovyov Vitaly

    2016-01-01

    Full Text Available The article deals with the issues concerning the formation of the structure and properties of fine-grained concrete with organomineral additive produced through mechanochemical activation of thermal power plant fly ash together with superplasticizer. The additive is produced in a high-speed activator at the collision particles’ speed of about 80 m/s. The use of the additive in fine-grained concrete in the amounts of 0.5-1% increased the strength by 30-50% and reduced the size and volume of pores. The cement consumption in such concrete is close to the cement consumption in common concrete of equal resistance.

  4. Fine-scale population structure and the era of next-generation sequencing

    OpenAIRE

    Henn, Brenna M.; Gravel, Simon; Moreno-Estrada, Andres; Acevedo-Acevedo, Suehelay; Bustamante, Carlos D.

    2010-01-01

    Fine-scale population structure characterizes most continents and is especially pronounced in non-cosmopolitan populations. Roughly half of the world's population remains non-cosmopolitan and even populations within cities often assort along ethnic and linguistic categories. Barriers to random mating can be ecologically extreme, such as the Sahara Desert, or cultural, such as the Indian caste system. In either case, subpopulations accumulate genetic differences if the barrier is maintained ov...

  5. Multi-ethnic fine-mapping of 14 central adiposity loci

    DEFF Research Database (Denmark)

    Liu, Ching-Ti; Buchkovich, Martin L; Winkler, Thomas W

    2014-01-01

    The Genetic Investigation of Anthropometric Traits (GIANT) consortium identified 14 loci in European Ancestry (EA) individuals associated with waist-to-hip ratio (WHR) adjusted for body mass index. These loci are wide and narrowing the signals remains necessary. Twelve of 14 loci identified in GI......-analysis results and aids in fine-mapping shared variants at these locations. We annotated variants using information from the ENCODE Consortium and Roadmap Epigenomics Project to prioritize variants for possible functionality....

  6. Local Alignments for Fine-Grained Categorization

    NARCIS (Netherlands)

    Gavves, E.; Fernando, B.; Snoek, C.G.M.; Smeulders, A.W.M.; Tuytelaars, T.

    2015-01-01

    The aim of this paper is fine-grained categorization without human interaction. Different from prior work, which relies on detectors for specific object parts, we propose to localize distinctive details by roughly aligning the objects using just the overall shape. Then, one may proceed to the

  7. Field validation of recycled concrete fines usage.

    Science.gov (United States)

    2015-03-01

    The amount of recycled concrete fines permitted in concrete mixing water is limited by ASTM C 1602 to 5.0 percent of the mixing : water, by mass, in order to avoid detrimental effects on concrete properties. Depending upon the exact nature of the rec...

  8. Hydrothermal synthesis of fine oxide powders

    Indian Academy of Sciences (India)

    Unknown

    Tokyo Institute of Technology, and Teikyo University of Science and Technology, 3-7-19 Seijo, Setagaya,. Tokyo 157-0066 ... peratures from 100–10,000°C. Hydrothermal is one of the best methods to produce pure fine oxide powders. The authors ... bombs and gas intensifiers for specialized gases, A, H2,. O2, NH3, etc.

  9. Approximation properties of fine hyperbolic graphs

    Indian Academy of Sciences (India)

    groups have invariant translation approximation property (ITAP, see Definition 2.2). He also pointed out that there was no serious difficulty in extending the main theorem to fine hyperbolic graphs, but he did not outline the proof. So in this paper, we first give a proof for this extension, see Theorem 1.1 below. Then we define ...

  10. Spinodal decomposition in fine grained materials

    Indian Academy of Sciences (India)

    Unknown

    Spinodal decomposition in fine grained materials. H RAMANARAYAN and T A ABINANDANAN*. Department of Metallurgy, Indian Institute of Science, Bangalore 560 012, India. Abstract. We have used a phase field model to study spinodal decomposition in polycrystalline materials in which the grain size is of the same ...

  11. Testing with fine fragrances in eczema patients

    DEFF Research Database (Denmark)

    Johansen, J D; Frosch, Peter J; Rastogi, Suresh Chandra

    2001-01-01

    The frequencies of contact allergic reactions to 2 fine fragrances were studied by patch testing. Further, a comparison was made of test results before and after evaporation of the solvent. A total of 480 consecutive eczema patients were included, 100 in the Dortmund clinic and 380 in the Gentoft...

  12. BIOREMEDIATION OF OIL-CONTAMINATED FINE SEDIMENTS.

    Science.gov (United States)

    Bioremediation of oil contamination has been shown to be effective for cobble and sandy shorelines. To assess the operational limitations of this technology, this project studied its potential to treat buried oil in fine sediments. The effectiveness of bioremediation by nutrient ...

  13. Dutch Alternatives to Imprisonment and Fines

    NARCIS (Netherlands)

    Peters, Laura; Hilgendorf, Eric; Valerius, Brian

    2015-01-01

    The modern Dutch sanctioning system started to develop as from 1886 with the introduction of the Wetboek van Strafrecht (Dutch Penal Code). With its primary focus on imprisonment and fines, this Code only included three principal penalties. However, it has undergone a statutory evolution, both in

  14. Extrapulmonary tuberculosis: Fine needle aspiration cytology ...

    African Journals Online (AJOL)

    Background: The increasing prevalence of extrapulmonary manifestation of tuberculosis with the HIV scourge is a cause for concern. Objective: To determine the role of fine needle aspiration cytology (FNAC) in the diagnosis of extrapulmonary tuberculosis. Patients and Methods: This is a consecutive 9-year analysis of ...

  15. Fine filament NbTi superconductive composite

    International Nuclear Information System (INIS)

    Hong, S.; Grabinsky, G.; Marancik, W.; Pattanayak, D.

    1986-01-01

    The large superconducting magnet for the high energy physics accelerator requires fine filament composite to minimize the field error due to the persistent current in the filaments. New concepts toward the fine filament composite and its cable fabrication are discussed. Two-stage cables of fine wire with intermediate number of filaments were introduced. The first stage was six wires cables around one and in the second stage this was used to produce a Rutherford cable. The advantage of this process is in the ease of billet fabrication since the number of filaments in a single wire is within the range of easy billet fabrication. The disadvantage is in the cable fabrication. One of the major concerns in the fabrication of fine NbTi filaments composite in a copper matrix is the intermetallic compound formation during the extrusion and heat treatment steps. The hard intermetallic particles degrade the uniformity of the filaments and reduce the critical current density. The process of using Nb barrier between the filaments and copper matrix in order to prevent this CuTi intermetallic particle formation is described

  16. Escherichia coli strains with promoter libraries constructed by Red/ET recombination pave the way for transcriptional fine tuning

    DEFF Research Database (Denmark)

    Braatsch, Stephan; Helmark, Søren; Kranz, Harald

    2008-01-01

    System-oriented applications of genetic engineering, such as metabolic engineering, often require the serial optimization of enzymatic reaction steps, which can be achieved by transcriptional, fine-tuning. However, approaches to changing gene expression are usually limited to deletion and/or stro...

  17. Journal of Genetics | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    ... backcross derived line possessing Xa21 + Pi2 and another possessing Xa33 were intercrossed to stack the target resistance genes into the genetic background of RPHR-1005. At ICF4, 10 promising lines possessing three resistance genes in homozygous condition along with fine-grain type, complete fertility restoration, ...

  18. Association genetics in Pinus taeda L. I. wood property traits

    Science.gov (United States)

    Santiago C. Gonzalez-Martinez; Nicholas C. Wheeler; Elhan Ersoz; C. Dana Nelson; David B. Neale

    2007-01-01

    Genetic association is a powerful method for dissecting complex adaptive traits due to (i) fine-scale mapping resulting from historical recombination, (ii) wide coverage of phenotypic and genotypic variation within a single experiment, and (iii) the simultaneous discovery of loci and alleles. In this article, genetic association among single nucleotide polymorphisms (...

  19. Fine root production at drained peatland sites

    Energy Technology Data Exchange (ETDEWEB)

    Finer, L. [Finnish Forest Research Inst. (Finland). Joensuu Research Station; Laine, J. [Helsinki Univ. (Finland). Dept. of Forest Ecology

    1996-12-31

    The preliminary results of the Finnish project `Carbon balance of peatlands and climate change` show that fine roots play an important role in carbon cycling on peat soils. After drainage the roots of mire species are gradually replaced by the roots of trees and other forest species. Pine fine root biomass reaches a maximum level by the time of crown closure, some 20 years after drainage on pine mire. The aim of this study is to compare the results of the sequential coring method and the ingrowth bag method used for estimating fine root production on three drained peatland sites of different fertility. The results are preliminary and continuation to the work done in the study Pine root production on drained peatlands, which is part of the Finnish project `Carbon cycling on peatlands and climate change`. In this study the fine root biomass was greater on the poor site than on the rich sites. Pine fine root production increased with the decrease in fertility. Root turnover and the production of field layer species were greater on the rich sites than on the poor site. The results suggested that the in growth bag method measured more root activity than the magnitude of production. More than two growing seasons would have been needed to balance the root dynamics in the in growth bags with the surrounding soil. That time would probably have been longer on the poor site than on the rich ones and longer for pine and field layer consisting of dwarf shrubs than for field layer consisting of sedge like species and birch. (11 refs.)

  20. Genetic Mapping

    Science.gov (United States)

    ... Links for Patient Care Education All About the Human Genome Project Fact Sheets Genetic Education Resources for Teachers Genomic ... genetic mapping? Among the main goals of the Human Genome Project (HGP) was to develop new, better and cheaper ...

  1. Genetic Disorders

    Science.gov (United States)

    ... This can cause a medical condition called a genetic disorder. You can inherit a gene mutation from ... during your lifetime. There are three types of genetic disorders: Single-gene disorders, where a mutation affects ...

  2. Genetic Testing

    Science.gov (United States)

    ... risk factor for the development of celiac disease, genetic predisposition. Without this factor, it is impossible that the ... with antibody testing in the future. When the genetic predisposition for celiac disease was detected (on Chromosome 6) ...

  3. Genetic counseling

    Science.gov (United States)

    ... have a high risk of having babies with Tay-Sachs or Canavan's disease. African-Americans, who may risk ... yours to make. Images Genetic counseling and prenatal diagnosis References Simpson JL, Holzgreve W, Driscoll DA. Genetic ...

  4. Genetic risk

    OpenAIRE

    ten Kate, Leo P.

    2012-01-01

    In this paper I will review different aspects of genetic risk in the context of preconception care. I restrict myself to the knowledge of risk which is relevant for care and/or enables reproductive choice. The paper deals with chromosomes, genes and the genetic classification of diseases, and it explains why Mendelian disorders frequently do not show the expected pattern of occurrence in families. Factors that amplify genetic risk are also discussed. Of the two methods of genetic risk assessm...

  5. Imaging Genetics

    Science.gov (United States)

    Munoz, Karen E.; Hyde, Luke W.; Hariri, Ahmad R.

    2009-01-01

    Imaging genetics is an experimental strategy that integrates molecular genetics and neuroimaging technology to examine biological mechanisms that mediate differences in behavior and the risks for psychiatric disorder. The basic principles in imaging genetics and the development of the field are discussed.

  6. Incorporation and remobilization of ¹³C within the fine-root systems of individual Abies alba trees in a temperate coniferous stand.

    Science.gov (United States)

    Endrulat, Tina; Saurer, Matthias; Buchmann, Nina; Brunner, Ivano

    2010-12-01

    Forest ecosystems have a large carbon (C) storage capacity, which depends on their productivity and the residence time of C. Therefore, the time interval between C assimilation and its return to the atmosphere is an important parameter for determining C storage. Especially fine roots (≤2 mm in diameter) undergo constant replacement and provide a large biomass input to the soil. In this study, we aimed to determine the residence time of C in living fine roots and the decomposition rates of dead fine roots. Therefore, we pulse-labelled nine 20-year-old individual silver fir trees (Abies alba Miller; ∼70 cm tall) with ¹³CO₂ in situ to trace the assimilated C over time into the fine-root systems. Whole trees were harvested at different time points after labelling in autumn, biomass was determined and cellulose and starch of fine roots were extracted. Moreover, soil cores were taken and ingrowth cores installed, in which fine roots were genetically identified, to assess incorporation and remobilization of ¹³C in the fine roots of silver fir trees; litterbags were used to determine fine-root decomposition rates. The ¹³C label was incorporated in the fine-root system as cellulose within 3 days, with highest values after 30 days, before reaching background levels after 1 year. The highest δ¹³C values were found in starch throughout the experiment. ¹³C recovery and carbon mean residence times did not differ significantly among fine-root diameter classes, indicating size-independent C turnover times in fine roots of A. alba trees of ∼219 days. Furthermore, carbon was remobilized from starch into newly grown fine roots in the next spring after our autumn labelling. One year after installation, litterbags with fine roots revealed a decrease of biomass of ∼40% with relative ¹³C content in fine-root bulk biomass and cellulose of ∼50%, indicating a faster loss of ¹³C-labelled compounds compared with bulk biomass. Our results also suggest that genetic

  7. Increasing the mechanical strength of fine-grained concrete by introducing finely dispersed mineral additives

    Science.gov (United States)

    Khakimullina, Svetlana; Il'ina, Liliia; Mukhina, Irina

    2017-01-01

    The paper investigates the influence of particles size and the quantity of mineral additives, both active and inert, on the strength of fine-grained concrete. Concentrations of fine silica fume and diopside for maximum hardening of fine-grained concrete with a given size of input particles were determined experimentally. The strength properties of fine-grained concrete were detected by testing the sample beams with dimensions of 40×40×160 mm after 28 days of hardening under normal conditions. The results show that adding silica fume in the amount of 12% increases the compressive strength of concrete up to 55%; 7% of diopside with 52.5 microns dispersion - up to 46.7%; 3% of diopside with 8.9 microns dispersion - up to 45.8%. It was found that the greater the dispersion of inert mineral additive is, the less its optimum amount providing maximum hardening of fine-grained concrete is. Thus, the optimum ratio of these two mineral additives was determined to achieve the required strength. Adding 12% of silica fume and 7% of diopside with 52.5 microns dispersion provides the highest efficiency of the concrete strength properties. The fine concrete with such relation of additives has the strength 2.5 times greater compared to the control one.

  8. About Genetic Counselors

    Science.gov (United States)

    ... clinical care in many areas of medicine. Assisted Reproductive Technology/Infertility Genetics Cancer Genetics Cardiovascular Genetics Cystic Fibrosis Genetics Fetal Intervention and Therapy Genetics Hematology Genetics Metabolic Genetics ...

  9. Magnification's effect on endodontic fine motor skills.

    Science.gov (United States)

    Bowers, David J; Glickman, Gerald N; Solomon, Eric S; He, Jianing

    2010-07-01

    The purpose of this study was to quantitatively investigate the effect of magnification on fine motor skills used in endodontics. This study used a novel manual dexterity test that was performed with and without magnification. An 8x operating microscope and 2.5x dental loupes were used for the magnification tests. Forty subjects, 20 with microscope experience and 20 without, participated in the study. Performance on the test was evaluated by using an accuracy scoring system, and the time needed to complete the test was recorded for each subject. A significant increase in accuracy score with each level of magnification was demonstrated (P magnification to enhance fine motor skills was supported in all age groups and experience levels. Published by Elsevier Inc.

  10. Measure theory and fine properties of functions

    CERN Document Server

    Evans, Lawrence Craig

    2015-01-01

    Measure Theory and Fine Properties of Functions, Revised Edition provides a detailed examination of the central assertions of measure theory in n-dimensional Euclidean space. The book emphasizes the roles of Hausdorff measure and capacity in characterizing the fine properties of sets and functions. Topics covered include a quick review of abstract measure theory, theorems and differentiation in ℝn, Hausdorff measures, area and coarea formulas for Lipschitz mappings and related change-of-variable formulas, and Sobolev functions as well as functions of bounded variation.The text provides complete proofs of many key results omitted from other books, including Besicovitch's covering theorem, Rademacher's theorem (on the differentiability a.e. of Lipschitz functions), area and coarea formulas, the precise structure of Sobolev and BV functions, the precise structure of sets of finite perimeter, and Aleksandrov's theorem (on the twice differentiability a.e. of convex functions).This revised edition includes countl...

  11. Customizing digital printing for fine art practice

    Science.gov (United States)

    Parraman, Carinna E.; Thirkell, Paul; Hoskins, Steve; Wang, Hong Qiang; Laidler, Paul

    2005-01-01

    The presentation will demonstrate how through alternative methods of digital print production the Centre for Fine Print Research (CFPR) is developing methodologies for digital printing that attempt to move beyond standard reproductive print methods. Profiling is used for input and output hardware, along with bespoke profiling for fine art printmaking papers. Examples of artist's work, and examples from the Perpetual Portfolio are included - an artist in residence scheme for selected artists wanting to work at the Centre and to make a large-format digital print. Colour is an important issue: colour fidelity, colour density on paper, colour that can be achieved through multiple-pass printing. Research is also underway to test colour shortfalls in the current inkjet ink range, and to extend colour through the use of traditional printing inks.

  12. BepiColombo fine sun sensor

    Science.gov (United States)

    Boslooper, Erik; van der Heiden, Nico; Naron, Daniël.; Schmits, Ruud; van der Velde, Jacob Jan; van Wakeren, Jorrit

    2017-11-01

    Design, development and verification of the passive Fine Sun Sensor (FSS) for the BepiColombo spacecraft is described. Major challenge in the design is to keep the detector at acceptable temperature levels while exposed to a solar flux intensity exceeding 10 times what is experienced in Earth orbit. A mesh type Heat Rejection Filter has been developed. The overall sensor design and its performance verification program is described.

  13. A solution defined by fine vectors

    NARCIS (Netherlands)

    Xu, G.; Sun, H.; Sun, H.; Hoede, C.; Driessen, Theo

    Bumb and Hoede have shown that a cooperative game can be split into two games, the reward game and the fine game, by considering the sign of quantities $c_v^S$ in the c-diagram of the game. One can then define a solution $x$ for the original game as $x = x_r - x_f$ , where $x_r$ is a solution for

  14. Shock fabrics in fine-grained micrometeorites

    Science.gov (United States)

    Suttle, M. D.; Genge, M. J.; Russell, S. S.

    2017-10-01

    The orientations of dehydration cracks and fracture networks in fine-grained, unmelted micrometeorites were analyzed using rose diagrams and entropy calculations. As cracks exploit pre-existing anisotropies, analysis of their orientation provides a mechanism with which to study the subtle petrofabrics preserved within fine-grained and amorphous materials. Both uniaxial and biaxial fabrics are discovered, often with a relatively wide spread in orientations (40°-60°). Brittle deformation cataclasis and rotated olivine grains are reported from a single micrometeorite. This paper provides the first evidence for impact-induced shock deformation in fine-grained micrometeorites. The presence of pervasive, low-grade shock features in CM chondrites and CM-like dust, anomalously low-density measurements for C-type asteroids, and impact experiments which suggest CM chondrites are highly prone to disruption all imply that CM parent bodies are unlikely to have remained intact and instead exist as a collection of loosely aggregated rubble-pile asteroids, composed of primitive shocked clasts.

  15. Specification of the fineness of coal ash

    Energy Technology Data Exchange (ETDEWEB)

    Hughes, B.P. [University of Birmingham, Birmingham (United Kingdom). Dept. of Civil Engineering

    1994-12-31

    Specifications for the size distribution of coal ash usually consider one size, for example the mass retained on a 45{mu}m sieve, and ignore the general particle distribution. This over-simplified approach had tended to persist because alternative parameters, such as specific surface obtained from air permeability tests as used for cements, have been found to be even more unsatisfactory. However, if the size distribution is determined satisfactorily using modern techniques then it can be shown that a suitable parameter for the size distribution can be a valuable aid in characterising the material. The paper reviews the reasons for the deficiencies in the earlier tests for determining the fineness of PFA and then describes a technique for specifying PFA fineness which overcomes the problems associated with the above. The application of a suitable grading parameter for PFA is illustrated by reference to mix design for PFA concrete. Only by reference to the relevant characteristics of all the constituents of the concrete is it possible to design for a required property in the resulting concrete with any reasonable accuracy. A comprehensive method of mix design capable of accommodating different cements and PFAs as well as different fine and coarse aggregates and entrained air contents is outlined and it is seen that similar grading parameters can also be utilised for the aggregates to facilitate proportioning of constituents to achieve a required concrete workability in terms of Vebe time. 12 refs., 4 figs., 5 tabs.

  16. Computer games and fine motor skills.

    Science.gov (United States)

    Borecki, Lukasz; Tolstych, Katarzyna; Pokorski, Mieczyslaw

    2013-01-01

    The study seeks to determine the influence of computer games on fine motor skills in young adults, an area of incomplete understanding and verification. We hypothesized that computer gaming could have a positive influence on basic motor skills, such as precision, aiming, speed, dexterity, or tremor. We examined 30 habitual game users (F/M - 3/27; age range 20-25 years) of the highly interactive game Counter Strike, in which players impersonate soldiers on a battlefield, and 30 age- and gender-matched subjects who declared never to play games. Selected tests from the Vienna Test System were used to assess fine motor skills and tremor. The results demonstrate that the game users scored appreciably better than the control subjects in all tests employed. In particular, the players did significantly better in the precision of arm-hand movements, as expressed by a lower time of errors, 1.6 ± 0.6 vs. 2.8 ± 0.6 s, a lower error rate, 13.6 ± 0.3 vs. 20.4 ± 2.2, and a shorter total time of performing a task, 14.6 ± 2.9 vs. 32.1 ± 4.5 s in non-players, respectively; p < 0.001 all. The findings demonstrate a positive influence of computer games on psychomotor functioning. We submit that playing computer games may be a useful training tool to increase fine motor skills and movement coordination.

  17. RSW Fully Tet Cell-Centered Fine Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This is the RSW dataset for a fine fully tetrahedral grid designed for a cell-centered unstructured solver. UG3 : Grid File Name = rsw_fine_tetcc.b8.ugrid UG3 : Quad...

  18. Ultrasound-Guided Fine Needle Aspiration Biopsy of the Thyroid

    Science.gov (United States)

    ... Physician Resources Professions Site Index A-Z Ultrasound-Guided Fine Needle Aspiration Biopsy of the Thyroid An ... Aspiration Biopsy of the Thyroid? What is Ultrasound-Guided Fine Needle Aspiration Biopsy of the Thyroid? During ...

  19. Flocculation of chromite ore fines suspension using polysaccharide ...

    Indian Academy of Sciences (India)

    Unknown

    liquid separation. Keywords. Flocculation; graft copolymer; mineral industry effluent; chromite ore fines; ... work well as flocculating agent on coal washery effluent, copper and iron ore fines etc (Karmakar et al 1998, 1999;. Tripathy et al 2001).

  20. Identifying fine sediment sources to alleviate flood risk caused by fine sediments through catchment connectivity analysis

    Science.gov (United States)

    Twohig, Sarah; Pattison, Ian; Sander, Graham

    2017-04-01

    Fine sediment poses a significant threat to UK river systems in terms of vegetation, aquatic habitats and morphology. Deposition of fine sediment onto the river bed reduces channel capacity resulting in decreased volume to contain high flow events. Once the in channel problem has been identified managers are under pressure to sustainably mitigate flood risk. With climate change and land use adaptations increasing future pressures on river catchments it is important to consider the connectivity of fine sediment throughout the river catchment and its influence on channel capacity, particularly in systems experiencing long term aggradation. Fine sediment erosion is a continuing concern in the River Eye, Leicestershire. The predominately rural catchment has a history of flooding within the town of Melton Mowbray. Fine sediment from agricultural fields has been identified as a major contributor of sediment delivery into the channel. Current mitigation measures are not sustainable or successful in preventing the continuum of sediment throughout the catchment. Identifying the potential sources and connections of fine sediment would provide insight into targeted catchment management. 'Sensitive Catchment Integrated Modelling Analysis Platforms' (SCIMAP) is a tool often used by UK catchment managers to identify potential sources and routes of sediment within a catchment. SCIMAP is a risk based model that combines hydrological (rainfall) and geomorphic controls (slope, land cover) to identify the risk of fine sediment being transported from source into the channel. A desktop version of SCIMAP was run for the River Eye at a catchment scale using 5m terrain, rainfall and land cover data. A series of SCIMAP model runs were conducted changing individual parameters to determine the sensitivity of the model. Climate Change prediction data for the catchment was used to identify potential areas of future connectivity and erosion risk for catchment managers. The results have been

  1. 76 FR 31307 - Commission of Fine Arts; Notice of Meeting

    Science.gov (United States)

    2011-05-31

    ... COMMISSION OF FINE ARTS Commission of Fine Arts; Notice of Meeting The next meeting of the U.S. Commission of Fine Arts is scheduled for June 16, 2011, at 10 a.m. in the Commission offices at the National Building Museum,Suite 312, Judiciary Square, 401 F Street, NW., Washington, DC, 20001-2728. Items of...

  2. Numerical modeling of fine particle fractal aggregates in turbulent flow

    Directory of Open Access Journals (Sweden)

    Cao Feifeng

    2015-01-01

    Full Text Available A method for prediction of fine particle transport in a turbulent flow is proposed, the interaction between particles and fluid is studied numerically, and fractal agglomerate of fine particles is analyzed using Taylor-expansion moment method. The paper provides a better understanding of fine particle dynamics in the evolved flows.

  3. Genetic barcodes

    Science.gov (United States)

    Weier, Heinz -Ulrich G

    2015-08-04

    Herein are described multicolor FISH probe sets termed "genetic barcodes" targeting several cancer or disease-related loci to assess gene rearrangements and copy number changes in tumor cells. Two, three or more different fluorophores are used to detect the genetic barcode sections thus permitting unique labeling and multilocus analysis in individual cell nuclei. Gene specific barcodes can be generated and combined to provide both numerical and structural genetic information for these and other pertinent disease associated genes.

  4. Hemicellulose fine structure is affected differently during ripening of tomato lines with contrasted texture.

    Science.gov (United States)

    Lahaye, Marc; Quemener, Bernard; Causse, Mathilde; Seymour, Graham B

    2012-11-01

    The impact of genetic and fruit ripening on hemicelluloses fine structure was studied in twelve near isogenic lines of tomato fruits harboring firmness QTL. The sugar composition and the MALDI-TOF MS oligosaccharides profile after glucanase hydrolysis of the cell walls were determined from all green and red fruits pericarp tissue. MS profiles showed two major series of oligomers attributed to xyloglucan (XG) and glucomannan (GM) with minor peaks for xylan and ions attributed to galacto-oligomers. The oligosaccharides MS intensity varied significantly with the fruit genetic and ripening status. Correlations between MS intensity indicated structural regulations of both XG and GM structures with genetics and ripening. These results point to a region on the tomato chromosome 9 controlling cell wall galactose metabolism. Copyright © 2012 Elsevier B.V. All rights reserved.

  5. Genetic modification and genetic determinism

    Directory of Open Access Journals (Sweden)

    Vorhaus Daniel B

    2006-06-01

    Full Text Available Abstract In this article we examine four objections to the genetic modification of human beings: the freedom argument, the giftedness argument, the authenticity argument, and the uniqueness argument. We then demonstrate that each of these arguments against genetic modification assumes a strong version of genetic determinism. Since these strong deterministic assumptions are false, the arguments against genetic modification, which assume and depend upon these assumptions, are therefore unsound. Serious discussion of the morality of genetic modification, and the development of sound science policy, should be driven by arguments that address the actual consequences of genetic modification for individuals and society, not by ones propped up by false or misleading biological assumptions.

  6. Mapping genetic influences on the corticospinal motor system in humans

    DEFF Research Database (Denmark)

    Cheeran, B J; Ritter, C; Rothwell, J C

    2009-01-01

    of the contribution of single nucleotide polymorphisms (SNP) and variable number tandem repeats. In humans, the corticospinal motor system is essential to the acquisition of fine manual motor skills which require a finely tuned coordination of activity in distal forelimb muscles. Here we review recent brain mapping...... degeneration. These studies underscore the potential of non-invasive brain mapping techniques to characterize the genetic influence on the human corticospinal motor system....

  7. Haptic rendering for simulation of fine manipulation

    CERN Document Server

    Wang, Dangxiao; Zhang, Yuru

    2014-01-01

    This book introduces the latest progress in six degrees of freedom (6-DoF) haptic rendering with the focus on a new approach for simulating force/torque feedback in performing tasks that require dexterous manipulation skills. One of the major challenges in 6-DoF haptic rendering is to resolve the conflict between high speed and high fidelity requirements, especially in simulating a tool interacting with both rigid and deformable objects in a narrow space and with fine features. The book presents a configuration-based optimization approach to tackle this challenge. Addressing a key issue in man

  8. Computer Models Simulate Fine Particle Dispersion

    Science.gov (United States)

    2010-01-01

    Through a NASA Seed Fund partnership with DEM Solutions Inc., of Lebanon, New Hampshire, scientists at Kennedy Space Center refined existing software to study the electrostatic phenomena of granular and bulk materials as they apply to planetary surfaces. The software, EDEM, allows users to import particles and obtain accurate representations of their shapes for modeling purposes, such as simulating bulk solids behavior, and was enhanced to be able to more accurately model fine, abrasive, cohesive particles. These new EDEM capabilities can be applied in many industries unrelated to space exploration and have been adopted by several prominent U.S. companies, including John Deere, Pfizer, and Procter & Gamble.

  9. The 1989 progress report: Fine chemistry

    International Nuclear Information System (INIS)

    Laszlo, P.

    1989-01-01

    The 1989 progress report of the laboratory of Fine Chemistry of the Polytechnic School (France) is presented. The investigations are focused on the following subjects: nuclear magnetic resonance study of adsorbates, origin of claid inflating phenomena, models on water-claid thin films interaction, re-orientation of benzene adsorbed on aluminia, oxydation of cyclohexene, kaolinites, obtention of acrylates, recognition of molecules, biological chloration, distribution of addition products of N-benzylidene aniline and end ethers, epistemological reflection about representations in chemistry. The published papers, the conferences and Laboratory staff are listed [fr

  10. Pre - big bang inflation requires fine tuning

    Energy Technology Data Exchange (ETDEWEB)

    Turner, Michael S. [Fermi National Accelerator Laboratory (FNAL), Batavia, IL (United States); Weinberg, Erick J. [Fermi National Accelerator Laboratory (FNAL), Batavia, IL (United States)

    1997-10-01

    The pre-big-bang cosmology inspired by superstring theories has been suggested as an alternative to slow-roll inflation. We analyze, in both the Jordan and Einstein frames, the effect of spatial curvature on this scenario and show that too much curvature --- of either sign --- reduces the duration of the inflationary era to such an extent that the flatness and horizon problems are not solved. Hence, a fine-tuning of initial conditions is required to obtain enough inflation to solve the cosmological problems.

  11. Fine-Grained Concrete of Composite Binder

    Science.gov (United States)

    Fediuk, R.; Pak, A.; Kuzmin, D.

    2017-11-01

    The article is devoted to the application of industrial wastes for the production of high-quality concretes with specified characteristics. The composite binders with low water demand (BLW) have been developed. Their strength is approximately twice the strength of the initial cement, and dilute BLW with 50 - 70% of the ground slag or quartz sand in their composition provide the same strength as the original Portland cement. It was proved that the quartzite sand screening can be used as a filler in the preparation of fine-grained concretes.

  12. Fine structure of oceanic natural radioactivity field

    International Nuclear Information System (INIS)

    Il'ichev, V.I.; Kobylyanskij, V.V.; Myagkikh, A.I.; Ol'shanskij, Yu.I.; Kharlamov, Yu.M.

    1989-01-01

    The precise measurement of the intensity of the natural ocean gamma-radiation in terms of fine thermochaline structure of water masses is carried out by the series of slow vertical probings using a high-sensitivity gamma-spectrometer with the synchronous measurement of hydrological characteristics (temperature, salinity, pressure). The existence of nonhomogeneity in the distribution of natural radioactivity in depth not accompanied by analogous changes in the salinity is shown. It is assumed that the main role in this case is played by the binary diffusion

  13. Genetic Engineering

    Science.gov (United States)

    Phillips, John

    1973-01-01

    Presents a review of genetic engineering, in which the genotypes of plants and animals (including human genotypes) may be manipulated for the benefit of the human species. Discusses associated problems and solutions and provides an extensive bibliography of literature relating to genetic engineering. (JR)

  14. Genetic algorithms

    Energy Technology Data Exchange (ETDEWEB)

    Grefenstette, J.J.

    1994-12-31

    Genetic algorithms solve problems by using principles inspired by natural population genetics: They maintain a population of knowledge structures that represent candidate solutions, and then let that population evolve over time through competition and controlled variation. GAs are being applied to a wide range of optimization and learning problems in many domains.

  15. Genetic Counseling.

    Science.gov (United States)

    Exceptional Parent, 1987

    1987-01-01

    Information is presented on a number of tests used in genetic counseling (e.g., genetic evaluation, chromosome evaluation, consideration of multifactorial conditions, prenatal testing, and chorionic villus sampling) which help parents with one disabled child make family planning decisions. (CB)

  16. Genetic risk

    NARCIS (Netherlands)

    ten Kate, L.P.

    2012-01-01

    In this paper I will review different aspects of genetic risk in the context of preconception care. I restrict myself to the knowledge of risk which is relevant for care and/or enables reproductive choice. The paper deals with chromosomes, genes and the genetic classification of diseases, and it

  17. Genetic Romanticism

    DEFF Research Database (Denmark)

    Tupasela, Aaro

    2016-01-01

    . This article compares and contrasts the work of two doctors in Finland, Elias Lönnrot and Reijo Norio, working over a century and a half apart, to examine the ways in which they have contributed to the formation of national identity and unity. The notion of genetic romanticism is introduced as a term...... to complement the notion of national romanticism that has been used to describe the ways in which nineteenth-century scholars sought to create and deploy common traditions for national-romantic purposes. Unlike national romanticism, however, strategies of genetic romanticism rely on the study of genetic...... inheritance as a way to unify populations within politically and geographically bounded areas. Thus, new genetics have contributed to the development of genetic romanticisms, whereby populations (human, plant, and animal) can be delineated and mobilized through scientific and medical practices to represent...

  18. Method for producing dustless graphite spheres from waste graphite fines

    Science.gov (United States)

    Pappano, Peter J [Oak Ridge, TN; Rogers, Michael R [Clinton, TN

    2012-05-08

    A method for producing graphite spheres from graphite fines by charging a quantity of spherical media into a rotatable cylindrical overcoater, charging a quantity of graphite fines into the overcoater thereby forming a first mixture of spherical media and graphite fines, rotating the overcoater at a speed such that the first mixture climbs the wall of the overcoater before rolling back down to the bottom thereby forming a second mixture of spherical media, graphite fines, and graphite spheres, removing the second mixture from the overcoater, sieving the second mixture to separate graphite spheres, charging the first mixture back into the overcoater, charging an additional quantity of graphite fines into the overcoater, adjusting processing parameters like overcoater dimensions, graphite fines charge, overcoater rotation speed, overcoater angle of rotation, and overcoater time of rotation, before repeating the steps until graphite fines are converted to graphite spheres.

  19. Molecular Eigensolution Symmetry Analysis and Fine Structure

    Directory of Open Access Journals (Sweden)

    William G. Harter

    2013-01-01

    Full Text Available Spectra of high-symmetry molecules contain fine and superfine level cluster structure related to J-tunneling between hills and valleys on rovibronic energy surfaces (RES. Such graphic visualizations help disentangle multi-level dynamics, selection rules, and state mixing effects including widespread violation of nuclear spin symmetry species. A review of RES analysis compares it to that of potential energy surfaces (PES used in Born-Oppenheimer approximations. Both take advantage of adiabatic coupling in order to visualize Hamiltonian eigensolutions. RES of symmetric and D2 asymmetric top rank-2-tensor Hamiltonians are compared with Oh spherical top rank-4-tensor fine-structure clusters of 6-fold and 8-fold tunneling multiplets. Then extreme 12-fold and 24-fold multiplets are analyzed by RES plots of higher rank tensor Hamiltonians. Such extreme clustering is rare in fundamental bands but prevalent in hot bands, and analysis of its superfine structure requires more efficient labeling and a more powerful group theory. This is introduced using elementary examples involving two groups of order-6 (C6 and D3~C3v, then applied to families of Oh clusters in SF6 spectra and to extreme clusters.

  20. Communication Optimizations for Fine-Grained UPCApplications

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Wei-Yu; Iancu, Costin; Yelick, Katherine

    2005-07-08

    Global address space languages like UPC exhibit high performance and portability on a broad class of shared and distributed memory parallel architectures. The most scalable applications use bulk memory copies rather than individual reads and writes to the shared space, but finer-grained sharing can be useful for scenarios such as dynamic load balancing, event signaling, and distributed hash tables. In this paper we present three optimization techniques for global address space programs with fine-grained communication: redundancy elimination, use of split-phase communication, and communication coalescing. Parallel UPC programs are analyzed using static single assignment form and a data flow graph, which are extended to handle the various shared and private pointer types that are available in UPC. The optimizations also take advantage of UPC's relaxed memory consistency model, which reduces the need for cross thread analysis. We demonstrate the effectiveness of the analysis and optimizations using several benchmarks, which were chosen to reflect the kinds of fine-grained, communication-intensive phases that exist in some larger applications. The optimizations show speedups of up to 70 percent on three parallel systems, which represent three different types of cluster network technologies.

  1. Pyrophoric properties of radioactive zircaloy fines

    International Nuclear Information System (INIS)

    Wurtz, R.; Bereznai, T.; Kroebel, R.

    1987-01-01

    Fragmentation of light water reactor fuel rods by chopping with a bundle shear in the head-end of a reprocessing plant is always accompanied by the occurrence of fine zircaloy particles or even dust, which had given rise to concern over safety because of the known pyrophoric behaviour of this alloy. In order to assess the dangers posed by this material to safe operation of the plant, an experimental program was carried out covering standard methods for obtaining safety relevant data for metallic dusts as well as special investigations for determining the oxidation kinetics of zircaloy and the effect of other material, i. e. metallic fission products, on the ignitability. Hazards could arise from zircaloy particles through self-ignition of dust layers accumulating in particular areas of the plant or from dust explosions when particles are raised by air flows. The experiments covered both possibilities. From the operational point of view, three plant areas (shear housing, dissolver and centrifuge or filter) for a potential occurrence of zircaloy fines were taken into consideration and will be discussed below

  2. Revisit to diffraction anomalous fine structure

    International Nuclear Information System (INIS)

    Kawaguchi, T.; Fukuda, K.; Tokuda, K.; Shimada, K.; Ichitsubo, T.; Oishi, M.; Mizuki, J.; Matsubara, E.

    2014-01-01

    The diffraction anomalous fine structure method has been revisited by applying this measurement technique to polycrystalline samples and using an analytical method with the logarithmic dispersion relation. The diffraction anomalous fine structure (DAFS) method that is a spectroscopic analysis combined with resonant X-ray diffraction enables the determination of the valence state and local structure of a selected element at a specific crystalline site and/or phase. This method has been improved by using a polycrystalline sample, channel-cut monochromator optics with an undulator synchrotron radiation source, an area detector and direct determination of resonant terms with a logarithmic dispersion relation. This study makes the DAFS method more convenient and saves a large amount of measurement time in comparison with the conventional DAFS method with a single crystal. The improved DAFS method has been applied to some model samples, Ni foil and Fe 3 O 4 powder, to demonstrate the validity of the measurement and the analysis of the present DAFS method

  3. Fine-scale population structure of blue whale wintering aggregations in the Gulf of California.

    Science.gov (United States)

    Costa-Urrutia, Paula; Sanvito, Simona; Victoria-Cota, Nelva; Enríquez-Paredes, Luis; Gendron, Diane

    2013-01-01

    Population differentiation in environments without well-defined geographical barriers represents a challenge for wildlife management. Based on a comprehensive database of individual sighting records (1988-2009) of blue whales from the winter/calving Gulf of California, we assessed the fine-scale genetic and spatial structure of the population using individual-based approaches. Skin samples of 187 individuals were analyzed for nine microsatellite loci. A single population with no divergence among years and months and no isolation by distance (Rxy = 0.1-0.001, p>0.05) were found. We ran two bayesian clustering methods using Structure and Geneland softwares in two different ways: 1) a general analysis including all individuals in which a single cluster was identified with both softwares; 2) a specific analysis of females only in which two main clusters (Loreto Bay and northern areas, and San Jose-La Paz Bay area) were revealed by Geneland program. This study provides information indicating that blue whales wintering in the Gulf of California are part of a single population unit and showed a fine-scale structure among females, possibly associated with their high site fidelity, particularly when attending calves. It is likely that the loss of genetic variation is minimized by male mediated gene flow, which may reduce the genetic drift effect. Opportunities for kin selection may also influence calf survival and, in consequence, have a positive impact on population demography in this small and endangered population.

  4. Energy efficient reduction of fine and ultra-fine dust in a nursery

    NARCIS (Netherlands)

    Jacobs, P.; Phaff, J.C.; Voogt, M.H.

    2014-01-01

    An intervention study with a decentral electrostatic filter has been carried out in a nursery. The field study shows that it is possible to reach a reduction up to 80% of ultra-fine (<0.1 μm) and up to 68% for the PM1 and PM2,5-PM1 fractions at a relatively low energy consumption. These particle

  5. European invasion of North American Pinus strobus at large and fine scales: high genetic diversity and fine-scale genetic clustering over time in the adventive range

    Czech Academy of Sciences Publication Activity Database

    Mandák, Bohumil; Hadincová, Věroslava; Mahelka, Václav; Wildová, Radka

    2013-01-01

    Roč. 8, č. 7 (2013), no-e68514 E-ISSN 1932-6203 R&D Projects: GA AV ČR IAA600050711; GA ČR(CZ) GAP504/11/0402 Institutional support: RVO:67985939 Keywords : Pinus strobus * invasion * microsatellites Subject RIV: EF - Botanics Impact factor: 3.534, year: 2013

  6. Managing Fine Sediment in Regulated Rivers

    Science.gov (United States)

    Schmidt, J. C.

    2015-12-01

    A paradigm useful in managing dams and diversions is that the combined effects of changing flow regime and sediment supply perturb regulated rivers into sediment deficit or sediment surplus. In the U.S. Southwest, large dams constructed on interregional rivers typically create sediment deficit segments >100 km long. Further downstream, sediment surplus may occur if desert tributaries deliver sufficient amounts of fine sediment, such as parts of the Rio Grande, lower Green River, and Colorado River delta. Sediment surplus also occurs on most smaller regional rivers. The protocols for managing rivers perturbed into sediment deficit have been refined for the Colorado River downstream from Glen Canyon Dam but are nonetheless challenged by externally determined water-supply agreements that require annual water deliveries that sometimes occur when there has been little tributary resupply. Virtually all of the naturally supplied sand to the depleted, 100-km long Marble Canyon comes from the Paria River. The sand delivery rate since 2012 was sufficiently large to trigger short-duration controlled floods under the High Flow Experiment (HFE) Protocol. The sand mass balance of Marble Canyon since 2012 when the HFE Protocol was adopted was positive due to the combination of relatively large sand delivery from the Paria River and average total annual flows. Large total annual flows have the potential to export large amounts of sand and create a negative sand mass balance. Despite the challenge of managing a scarce and highly variable sand supply and occasional years of large reservoir releases, the long-term (2006-2015) sand mass balance for the upstream half of Marble Canyon is indeterminant and is positive for the downstream half of Marble Canyon. The apparent success of managing sand in Grand Canyon under deficit conditions suggests that fine sediment management protocols might be developed for other regulated rivers. Implementation would require establishment of networks of

  7. Genetic Discrimination

    Science.gov (United States)

    Skip to main content Genetic Discrimination Enter Search Term(s): Español Research Funding An Overview Bioinformatics Current Grants Education and Training Funding Extramural Research News Features Funding Divisions ...

  8. Genetic Testing

    Science.gov (United States)

    ... on to their children Screening embryos for disease Testing for genetic diseases in adults before they cause ... provide information about the pros and cons of testing. NIH: National Human Genome Research Institute

  9. Genetic GIScience

    DEFF Research Database (Denmark)

    Jacquez, Geoffrey; Sabel, Clive E; Shi, Chen

    2015-01-01

    The exposome, defined as the totality of an individual's exposures over the life course, is a seminal concept in the environmental health sciences. Although inherently geographic, the exposome as yet is unfamiliar to many geographers. This article proposes a place-based synthesis, genetic geograp....... These methodological developments and exemplar provide the basis for a new synthesis in health geography: genetic GIScience.......The exposome, defined as the totality of an individual's exposures over the life course, is a seminal concept in the environmental health sciences. Although inherently geographic, the exposome as yet is unfamiliar to many geographers. This article proposes a place-based synthesis, genetic...... geographic information science (genetic GIScience), that is founded on the exposome, genome+, and behavome. It provides an improved understanding of human health in relation to biology (the genome+), environmental exposures (the exposome), and their social, societal, and behavioral determinants (the behavome...

  10. Arthropod Genetics.

    Science.gov (United States)

    Zumwalde, Sharon

    2000-01-01

    Introduces an activity on arthropod genetics that involves phenotype and genotype identification of the creature and the construction process. Includes a list of required materials and directions to build a model arthropod. (YDS)

  11. Seed gene flow and fine-scale structure in a Mediterranean pine ( Pinus pinaster Ait.) using nuclear microsatellite markers.

    Science.gov (United States)

    González-Martínez, C.; Gerber, S.; Cervera, T.; Martínez-Zapater, M.; Gil, L.; Alía, R.

    2002-06-01

    The Mediterranean populations of maritime pine ( Pinus pinaster Ait.) are typically small and have a scattered distribution, being threatened by human activities and forest fires. In the framework of the genetic-resources conservation program of this species, a native multi-age stand located in a Mediterranean area (central Spain) was studied using three highly polymorphic nuclear microsatellites (SSRs). Spatial autocorrelation analysis was conducted using Moran's index in order to detect fine-scale structure in both natural regeneration and mature trees. The spatial pattern of seed flow based on dispersed progeny was studied using a highly reliable subset of parent-offspring matches obtained by means of parentage analysis and simulation-based calculation of statistical confidence. Maritime pine showed a fine-scale structure at the seedling stage. In natural regeneration, the autocorrelograms indicated a patch size of approximately 10 m. The fine-scale structure seems to be produced by a restricted seed gene flow. In fact, there was an excess of parent-offspring matches in a radius of 15 m from the parent trees. Pines with a heavy seed, such as P. pinaster, are expected to have a short dispersal distance, thus producing a fine-scale structure. However, the fine-scale structure did not persist in the mature trees. Within-population genetic structure in Mediterranean pines may be affected by a number of post-dispersal events (e.g. mortality due to the severity of the Mediterranean climate and animal-mediated secondary dispersal during the summer period). Thus, great alteration in the pattern produced by the initial seed rain and differences in genetic structure between tree cohorts are expected.

  12. Angle-resolved photoemission extended fine structure

    International Nuclear Information System (INIS)

    Barton, J.J.

    1985-03-01

    Measurements of the Angle-Resolved Photoemission Extended Fine Structure (ARPEFS) from the S(1s) core level of a c(2 x 2)S/Ni(001) are analyzed to determine the spacing between the S overlayer and the first and second Ni layers. ARPEFS is a type of photoelectron diffraction measurement in which the photoelectron kinetic energy is swept typically from 100 to 600 eV. By using this wide range of intermediate energies we add high precision and theoretical simplification to the advantages of the photoelectron diffraction technique for determining surface structures. We report developments in the theory of photoelectron scattering in the intermediate energy range, measurement of the experimental photoemission spectra, their reduction to ARPEFS, and the surface structure determination from the ARPEFS by combined Fourier and multiple-scattering analyses. 202 refs., 67 figs., 2 tabs

  13. Contextual effects in fine spatial discriminations.

    Science.gov (United States)

    Olzak, Lynn A; Laurinen, Pentti I

    2005-10-01

    The context in which a pattern is viewed can greatly affect its apparent contrast, a phenomenon commonly attributed to pooled contrast gain control processes. A low-contrast surround may slightly enhance apparent contrast, whereas increasing the contrast of the surround leads to a monotonic decline in contrast appearance. We ask here how the presence of a patterned surround affects the ability to perform fine, suprathreshold orientation, contrast, and spatial frequency discriminations as a function of surround contrast and phase. Our results revealed an unexpected dip in performance when center and surround were in phase and similar in contrast. These results suggest that additional processes, perhaps those involved in scene segregation, play a role in contextual effects on discrimination.

  14. The composition of fine fragrances is changing

    DEFF Research Database (Denmark)

    Rastogi, Suresh Chandra; Menné, Torkil; Johansen, Jeanne Duus

    2003-01-01

    High frequencies of contact allergy to fragrance ingredients have been reported in recent years. Developments in analytical chemistry have made it possible to measure exposure to well-known fragrance contact allergens. It has been shown that exposure is widespread in different types of products...... material, the fragrance mix (FM). 10 fine fragrances were subjected to chemical analysis: 5 of these had been launched years ago (1921-1990) and 5 were the latest launches by the same companies, introduced 2 months to 4 years before purchase. The analysis revealed that the 5 old perfumes contained a mean...... products on the market, have a different composition from the new perfumes. This may be due to change in fashion or to an effort by the fragrance industry to focus on fragrance contact allergy, especially that to the FM ingredients....

  15. Robust retrieval of fine art paintings

    Science.gov (United States)

    Smolka, Bogdan; Lukac, Rastislav; Plataniotis, Konstantinos N.; Venetsanopoulos, Anastasios N.

    2003-10-01

    The rapid growth of image archives increases the need for efficient and fast tools that can retrieve and search through large amount of visual data. In this paper we propose an efficient method of extracting the image color content, which serves as an image digital signature, allowing to efficiently index and retrieve the content of large, heterogeneous multimedia databases. We apply the proposed method for the retrieval of images from the WEBMUSEUM Internet database, containing the collection of fine art images and show that the new method of image color representation is robust to image distorsions caused by resizing and compression and can be incorporated into existing retrieval systems which exploit the information on color content in digital images.

  16. Register allocation for fine grain threads on

    Directory of Open Access Journals (Sweden)

    D.C. Kiran

    2017-01-01

    Full Text Available A multicore processor has multiple processing cores on the same chip. Unicore and multicore processors are architecturally different. Since individual instructions are needed to be scheduled onto one of the available cores, it effectively decreases the number of instructions executed on the individual core of a multicore processor. As each core of a multicore processor has a private register file, it results in reduced register pressure. To effectively utilize the potential benefits of the multicore processor, the sequential program must be split into small parallel regions to be run on different cores, and the register allocation must be done for each of these cores. This article discusses register allocating heuristics for fine grained threads which can be scheduled on multiple cores. Spills are computed and its effect on speed-up, power consumption and performance per power is compared for a RAW benchmark suite.

  17. Sintering of Fine Particles in Suspension Plasma Sprayed Coatings

    OpenAIRE

    Latka, Leszek; Goryachev, Sergey B.; Kozerski, Stefan; Pawlowski, Lech

    2010-01-01

    Suspension plasma spraying is a process that enables the production of finely grained nanometric or submicrometric coatings. The suspensions are formulated with the use of fine powder particles in water or alcohol with some additives. Subsequently, the suspension is injected into plasma jet and the liquid additives evaporate. The remaining fine solids are molten and subsequently agglomerate or remain solid, depending on their trajectory in the plasma jet. The coating’s microstructure results ...

  18. J. Genet. classic 101

    Indian Academy of Sciences (India)

    Journal of Genetics, Vol. 85, No. 2, August 2006. 101. Page 2. J. Genet. classic. 102. Journal of Genetics, Vol. 85, No. 2, August 2006. Page 3. J. Genet. classic. Journal of Genetics, Vol. 85, No. 2, August 2006. 103. Page 4. J. Genet. classic. 104. Journal of Genetics, Vol. 85, No. 2, August 2006. Page 5. J. Genet. classic.

  19. J. Genet. classic 37

    Indian Academy of Sciences (India)

    Unknown

    Journal of Genetics, Vol. 84, No. 1, April 2005. 37. Page 2. J. Genet. classic. Journal of Genetics, Vol. 84, No. 1, April 2005. 38. Page 3. J. Genet. classic. Journal of Genetics, Vol. 84, No. 1, April 2005. 39. Page 4. J. Genet. classic. Journal of Genetics, Vol. 84, No. 1, April 2005. 40. Page 5. J. Genet. classic. Journal of ...

  20. J. Genet. classic 125

    Indian Academy of Sciences (India)

    Unknown

    Journal of Genetics, Vol. 83, No. 2, August 2004. 125. Page 2. J. Genet. classic. Journal of Genetics, Vol. 83, No. 2, August 2004. 126. Page 3. J. Genet. classic. Journal of Genetics, Vol. 83, No. 2, August 2004. 127. Page 4. J. Genet. classic. Journal of Genetics, Vol. 83, No. 2, August 2004. 128. Page 5. J. Genet. classic.

  1. An Einstein-Cartan Fine Structure Constant Definition

    Directory of Open Access Journals (Sweden)

    Stone R. A. Jr.

    2010-01-01

    Full Text Available The fine structure constant definition given in Stone R.A. Jr. Progress in Physics, 2010, v.1, 11-13 is compared to an Einstein-Cartan fine structure constant definition. It is shown that the Einstein-Cartan definition produces the correct pure theory value, just not the measure value. To produce the measured value, the pure theory Einstein-Cartan fine structure constant requires only the new variables and spin coupling of the fine structure constant definition in [1].

  2. Hydrogen Reduction of Hematite Ore Fines to Magnetite Ore Fines at Low Temperatures

    Directory of Open Access Journals (Sweden)

    Wenguang Du

    2017-01-01

    Full Text Available Surplus coke oven gases (COGs and low grade hematite ores are abundant in Shanxi, China. Our group proposes a new process that could simultaneously enrich CH4 from COG and produce separated magnetite from low grade hematite. In this work, low-temperature hydrogen reduction of hematite ore fines was performed in a fixed-bed reactor with a stirring apparatus, and a laboratory Davis magnetic tube was used for the magnetic separation of the resulting magnetite ore fines. The properties of the raw hematite ore, reduced products, and magnetic concentrate were analyzed and characterized by a chemical analysis method, X-ray diffraction, optical microscopy, and scanning electron microscopy. The experimental results indicated that, at temperatures lower than 400°C, the rate of reduction of the hematite ore fines was controlled by the interfacial reaction on the core surface. However, at temperatures higher than 450°C, the reaction was controlled by product layer diffusion. With increasing reduction temperature, the average utilization of hydrogen initially increased and tended to a constant value thereafter. The conversion of Fe2O3 in the hematite ore played an important role in the total iron recovery and grade of the concentrate. The grade of the concentrate decreased, whereas the total iron recovery increased with the increasing Fe2O3 conversion.

  3. Improving the Fine-Tuning of Metaheuristics: An Approach Combining Design of Experiments and Racing Algorithms

    Directory of Open Access Journals (Sweden)

    Eduardo Batista de Moraes Barbosa

    2017-01-01

    Full Text Available Usually, metaheuristic algorithms are adapted to a large set of problems by applying few modifications on parameters for each specific case. However, this flexibility demands a huge effort to correctly tune such parameters. Therefore, the tuning of metaheuristics arises as one of the most important challenges in the context of research of these algorithms. Thus, this paper aims to present a methodology combining Statistical and Artificial Intelligence methods in the fine-tuning of metaheuristics. The key idea is a heuristic method, called Heuristic Oriented Racing Algorithm (HORA, which explores a search space of parameters looking for candidate configurations close to a promising alternative. To confirm the validity of this approach, we present a case study for fine-tuning two distinct metaheuristics: Simulated Annealing (SA and Genetic Algorithm (GA, in order to solve the classical traveling salesman problem. The results are compared considering the same metaheuristics tuned through a racing method. Broadly, the proposed approach proved to be effective in terms of the overall time of the tuning process. Our results reveal that metaheuristics tuned by means of HORA achieve, with much less computational effort, similar results compared to the case when they are tuned by the other fine-tuning approach.

  4. Skeleton versus fine earth: what information is stored in the mobile extracellular soil DNA fraction?

    Science.gov (United States)

    Ascher, Judith; Ceccherini, Maria Teresa; Agnelli, Alberto; Corti, Guiseppe; Pietramellara, Giacomo

    2010-05-01

    The soil genome consists of an intracellular and an extracellular fraction. Recently, soil extracellular DNA (eDNA) has been shown to be quantitatively relevant, with a high survival capacity and mobility, playing a crucial role in the gene transfer by transformation, in the formation of bacterial biofilm and as a source of nutrients for soil microorganisms. The eDNA fraction can be discriminated and classified by its interaction with clay minerals, humic acids and Al/Fe oxihydroxides, resulting in differently mobile components. The eDNA extractable in water, classified as DNA free in the extracellular soil environment or adsorbed on soil colloids (eDNAfree/adsorbed), is hypothesized to be the most mobile DNA in soil. Challenging to assess the information stored in this DNA fraction, eDNAfree/adsorbed was recovered from fine earth (gel electrophoresis), and qualitative analysis in terms of the composition and distribution of fungal and bacterial communities (Denaturing Gradient Gel Electrophoresis- fingerprinting). The mobile soil eDNA, extracted from each horizon, was characterised by low molecular weight (result of the movement of eDNA along the soil profile and from fine earth to skeleton. The molecular characterization provided information about the autochthonous microflora inhabiting skeleton and fine earth as well as information about the fate of soil DNA in terms of presence, persistence and movement of eDNA and the stored genetic information.

  5. MODELLING FINE SCALE MOVEMENT CORRIDORS FOR THE TRICARINATE HILL TURTLE

    Directory of Open Access Journals (Sweden)

    I. Mondal

    2016-06-01

    Full Text Available Habitat loss and the destruction of habitat connectivity can lead to species extinction by isolation of population. Identifying important habitat corridors to enhance habitat connectivity is imperative for species conservation by preserving dispersal pattern to maintain genetic diversity. Circuit theory is a novel tool to model habitat connectivity as it considers habitat as an electronic circuit board and species movement as a certain amount of current moving around through different resistors in the circuit. Most studies involving circuit theory have been carried out at small scales on large ranging animals like wolves or pumas, and more recently on tigers. This calls for a study that tests circuit theory at a large scale to model micro-scale habitat connectivity. The present study on a small South-Asian geoemydid, the Tricarinate Hill-turtle (Melanochelys tricarinata, focuses on habitat connectivity at a very fine scale. The Tricarinate has a small body size (carapace length: 127–175 mm and home range (8000–15000 m2, with very specific habitat requirements and movement patterns. We used very high resolution Worldview satellite data and extensive field observations to derive a model of landscape permeability at 1 : 2,000 scale to suit the target species. Circuit theory was applied to model potential corridors between core habitat patches for the Tricarinate Hill-turtle. The modelled corridors were validated by extensive ground tracking data collected using thread spool technique and found to be functional. Therefore, circuit theory is a promising tool for accurately identifying corridors, to aid in habitat studies of small species.

  6. Modelling Fine Scale Movement Corridors for the Tricarinate Hill Turtle

    Science.gov (United States)

    Mondal, I.; Kumar, R. S.; Habib, B.; Talukdar, G.

    2016-06-01

    Habitat loss and the destruction of habitat connectivity can lead to species extinction by isolation of population. Identifying important habitat corridors to enhance habitat connectivity is imperative for species conservation by preserving dispersal pattern to maintain genetic diversity. Circuit theory is a novel tool to model habitat connectivity as it considers habitat as an electronic circuit board and species movement as a certain amount of current moving around through different resistors in the circuit. Most studies involving circuit theory have been carried out at small scales on large ranging animals like wolves or pumas, and more recently on tigers. This calls for a study that tests circuit theory at a large scale to model micro-scale habitat connectivity. The present study on a small South-Asian geoemydid, the Tricarinate Hill-turtle (Melanochelys tricarinata), focuses on habitat connectivity at a very fine scale. The Tricarinate has a small body size (carapace length: 127-175 mm) and home range (8000-15000 m2), with very specific habitat requirements and movement patterns. We used very high resolution Worldview satellite data and extensive field observations to derive a model of landscape permeability at 1 : 2,000 scale to suit the target species. Circuit theory was applied to model potential corridors between core habitat patches for the Tricarinate Hill-turtle. The modelled corridors were validated by extensive ground tracking data collected using thread spool technique and found to be functional. Therefore, circuit theory is a promising tool for accurately identifying corridors, to aid in habitat studies of small species.

  7. Desktop Genetics.

    Science.gov (United States)

    Hough, Soren H; Ajetunmobi, Ayokunmi; Brody, Leigh; Humphryes-Kirilov, Neil; Perello, Edward

    2016-11-01

    Desktop Genetics is a bioinformatics company building a gene-editing platform for personalized medicine. The company works with scientists around the world to design and execute state-of-the-art clustered regularly interspaced short palindromic repeats (CRISPR) experiments. Desktop Genetics feeds the lessons learned about experimental intent, single-guide RNA design and data from international genomics projects into a novel CRISPR artificial intelligence system. We believe that machine learning techniques can transform this information into a cognitive therapeutic development tool that will revolutionize medicine.

  8. Fine Sprays for Disinfection within Healthcare

    Directory of Open Access Journals (Sweden)

    G Nasr

    2016-09-01

    Full Text Available Problems exist worldwide with Hospital Acquired Infections (HAI's. The Spray Research Group (SRG have been working with relevant industries in developing a product which can provide a delivery system for treatment chemicals for surfaces, including the design and testing of a novel Spill-Return Atomiser (SRA for this purpose. A comprehensive description of this atomiser has already been given. This paper reports on a new application of this atomiser and discusses the problem of spray coating for disinfection that has been considered very little in previous work. The related spray coating performance tests in developing the product are thus provided. The experimental work includes determining the required spray duration and the coverage area produced by different sprays, including the analysis of the effects of atomiser positions, configurations, and the required number of atomisers. Comparison is made with the efficacy of an ultrasonic gas atomiser that is currently used for this purpose. The investigation has found that the utilisation of fine sprays (10μm>D32>25μm at high liquid pressure (<12MPa and low flow rates (<0.3 l/min is suitable for surface disinfection in healthcare applications (i.e. MRSA, VRSA etc.

  9. NARSTO fine-particle and ozone assessments

    International Nuclear Information System (INIS)

    Hales, Jeremy M.

    2003-01-01

    The NARSTO ozone and fine-particle assessments compile and present policy-relevant scientific information. - NARSTO, a tri-national North American consortium for applied tropospheric pollution research, conducts periodic assessments of air-pollution behavior to provide an information interface between the research community and individuals working in policy analysis and air-quality management. The first of these, entitled An Assessment of Tropospheric Ozone Pollution-A North American Perspective, appeared in late 2000 and has been circulated widely throughout the United States, Canada, Mexico, Europe, and South America. The second (currently) entitled NARSTO Assessment of the Atmospheric Science on Particulate Matter, is presently in its third-draft phase and is available for general review. A fourth draft, incorporating comments from the current review stage, will be submitted in January 2002 to a tri-national review committee composed of the Canadian Royal Society, the US National Academy of Sciences, and the Mexican Red de Desarrollo e Investigacion de la Calidad del Aire en Grandes Ciudades. Finalization of the document will follow this review, which will conclude in July 2000. Publication is expected in December 2002. These two assessments contain substantial amounts of policy-relevant information, which is of interest to the research community as well as those working in policy analysis and air-quality management. This presentation provides a brief overview of features and findings of the two documents

  10. Probing fine magnetic particles with neutron scattering

    International Nuclear Information System (INIS)

    Pynn, R.

    1991-01-01

    Because thermal neutrons are scattered both by nuclei and by unpaired electrons, they provide an ideal probe for studying the atomic and magnetic structures of fine-grained magnetic materials, including nanocrystalline solids, thin epitaxial layers, and colloidal suspensions of magnetic particles, known as ferrofluids. Diffraction, surface reflection, and small angle neutron scattering (SANS) are the techniques used. With the exception of surface reflection, these methods are described in this article. The combination of SANS with refractive-index matching and neutron polarisation analysis is particularly powerful because it allows the magnetic and atomic structures to be determined independently. This technique has been used to study both dilute and concentrated ferrofluid suspensions of relatively monodisperse cobalt particles, subjected to a series of applied magnetic fields. The size of the cobalt particle core and the surrounding surfactant layer were determined. The measured interparticle structure factor agrees well with a recent theory that allows correlations in binary mixtures of magnetic particles to be calculated in the case of complete magnetic alignment. When one of the species in such a binary mixture is a nonmagnetic, cyclindrical macromolecule, application of a magnetic field leads to some degree of alignment of the nonmagnetic species. This result has been demonstrated with tobacco mosaic virus suspended in a water-based ferrofluid

  11. La fine del mondo. Capitalismo e mutazione

    Directory of Open Access Journals (Sweden)

    Daniele Balicco

    2015-11-01

    Full Text Available Lo scopo di questo articolo è quello di mostrare un modo possibile di studiare la trasformazione radicale della vita quotidiana nelle società occidentali che, a partire da Pasolini, abbiamo iniziato a definire con il termine di mutazione. Proporrò tre ipotesi di ricerca possibili. Possiamo leggere la mutazione come un salto radicale nella storia dell’adattamento della specie umana all’habitat fisico e sociale nel quale vive? Oppure l’attuale trasformazione delle forme elementari della vita quotidiana, di cui tutti siamo testimoni, va interpretata, più semplicemente, come una metamorfosi culturale interna alla storia di lunga durata della “creatività distruttrice” del capitalismo? Infine, esiste un modo per provare a pensare la contemporaneità sovrapponendo queste due diverse logiche temporali? Interpretando il presente come risultato di una lotta fra temporalità a-sincrone, instabili, divergenti e in conflitto, interpreterò la ricorrenza sempre più frequente di rappresentazione estetiche della fine del mondo (in film, romanzi, teorie critiche come sintomo di una più generalizzata crisi della capacità umana di simbolizzare il tempo. In parallelo, l’analisi, in un’ottica antropologica di lungo periodo, di alcuni consumi simbolici di massa – come videogiochi, pornografia, droghe, tatuaggi, etc…. – mostrerà, nel ritorno compulsivo di riti di iniziazione bloccati, la richiesta inconsapevole di un’esperienza qualitativa del tempo che il nuovo presente microelettronico non conosce e non sa ancora pensare.

  12. Handedness effects of imagined fine motor movements.

    Science.gov (United States)

    Donoff, Christopher M; Madan, Christopher R; Singhal, Anthony

    2018-03-01

    Previous studies of movement imagery have found inter-individual differences in the ability to imagine whole-body movements. The majority of these studies have used subjective scales to measure imagery ability, which may be confounded by other factors related to effort. Madan and Singhal [2013. Introducing TAMI: An objective test of ability in movement imagery. Journal of Motor Behavior, 45(2), 153-166. doi: 10.1080/00222895.2013.763764 ] developed the Test of Ability in Movement Imagery (TAMI) to address these confounds by using a multiple-choice format with objectively correct responses. Here we developed a novel movement imagery questionnaire targeted at assessing movement imagery of fine-motor hand movements. This questionnaire included two subscales: Functionally-involved Movement (i.e., tool-related) and Isolated Movement (i.e., hand-only). Hand-dominance effects were observed, such that right-handed participants were significantly better at responding to right-hand questions compared to left-hand questions for both imagery types. A stronger handedness effect was observed for Functionally-involved Movement imagery, and it did not correlate with the Edinburgh Handedness Inventory. We propose that the Functionally-involved Movement imagery subscale provides an objective hand imagery test that induces egocentric spatial processing and a greater involvement of memory processes, potentially providing a better skill-based measure of handedness.

  13. The fine art of ‘sourcery’

    CERN Multimedia

    2009-01-01

    The commissioning of the new Linac4 source – first element of the new acceleration chain for the upgrade of the LHC (sLHC) – started at the beginning of July. After years of preparation but after only a few hours of fine-tuning of the numerous parameters involved, the source has delivered its first negative ions. The civil engineering work for the new Linac4 going on near Restaurant 2.While the LHC is preparing for restart, teams of experts involved in the sLHC project are also working on the new facilities that will allow the LHC to run at higher luminosity. The beginning of the new chain of accelerators is Linac4, whose excavation works started October last year. "The particle source that we are commissioning now will be installed at the beginning of the path", explains Maurizio Vretenar, Linac4 project leader. "It is a critical element of the chain as all protons that will circulate in the CERN accelerators will originate from it." The Linac 4 source is differ...

  14. Acclimation of fine root respiration to soil warming involves starch deposition in very fine and fine roots: a case study in Fagus sylvatica saplings.

    Science.gov (United States)

    Di Iorio, Antonino; Giacomuzzi, Valentino; Chiatante, Donato

    2016-03-01

    Root activities in terms of respiration and non-structural carbohydrates (NSC) storage and mobilization have been suggested as major physiological roles in fine root lifespan. As more frequent heat waves and drought periods within the next decades are expected, to what extent does thermal acclimation in fine roots represent a mechanism to cope with such upcoming climatic conditions? In this study, the possible changes in very fine (diameter root morphology and physiology in terms of respiration rate and NSC [soluble sugars (SS) and starch] concentrations, were investigated on 2-year-old Fagus sylvatica saplings subjected to a simulated long-lasting heat wave event and to co-occurring soil drying. For both very fine and fine roots, soil temperature (ST) resulted inversely correlated with specific root length, respiration rates and SSs concentration, but directly correlated with root mass, root tissue density and starch concentration. In particular, starch concentration increased under 28 °C for successively decreasing under 21 °C ST. These findings showed that thermal acclimation in very fine and fine roots due to 24 days exposure to high ST (∼ 28 °C), induced starch accumulation. Such 'carbon-savings strategy' should bear the maintenance costs associated to the recovery process in case of restored favorable environmental conditions, such as those occurring at the end of a heat wave event. Drought condition seems to affect the fine root vitality much more under moderate than high temperature condition, making the temporary exposure to high ST less threatening to root vitality than expected. © 2015 Scandinavian Plant Physiology Society.

  15. Performance of concrete with partial replacement of fine aggregates ...

    African Journals Online (AJOL)

    The study investigated the level of replacement of fine aggregate with waste glass that will result in optimal compressive strength. A total of 36 cubes were cast. 6 cubes without waste glass (control) and 30 cubes containing waste glass as partial replacement for fine aggregates at 15%, 25%, 35%, 45%, and 50%.

  16. The Careers of Fine Artists and the Embedded Creative

    Science.gov (United States)

    Carey, Charlotte

    2015-01-01

    While there is a growing body of scholarship on the creative industries and on the career trajectories of graduates from creative industries programmes, there has to date only been a limited amount of research that examines in detail, the careers of fine arts graduates. Fine art is arguably the least "vocational" of creative disciplines,…

  17. Fine Arts Standards of Learning for Virginia Public Schools

    Science.gov (United States)

    Virginia Department of Education, 2006

    2006-01-01

    The Fine Arts Standards of Learning in this publication represent a major development in public education in Virginia, emphasizing the importance of instruction in the fine arts (dance arts, music, theatre arts, and visual arts) as an important part of Virginia's efforts to provide challenging educational programs in the public schools. Knowledge…

  18. Deformation of fine-grained synthetic peridotite under wet conditions

    NARCIS (Netherlands)

    McDonnell, R.D.

    1997-01-01

    Fine-grained hydrated peridotite mylonites have been proposed to play an important role in controlling the strength of the continental lithosphere during rifting. For this reason, the deformation behaviour of wet fine-grained forsterite and forsterite-enstatite materials and the underlying

  19. Production and reproduction norms of fine woolled Merino sheep on ...

    African Journals Online (AJOL)

    The objective of this study was to establish a fine woolled Merino flock at the Grootfontein Agricultural Development Institute in order to evaluate the production and reproduction performance of fine woolled animals against a control line on natural pastures in the Karoo. Data collected from 1989 to 1999 were used to ...

  20. RSW Mixed Element Cell-Centered Fine Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This is a RSW mixed-element unstructured fine mesh for cell-centered solvers. UG3 : Grid File Name = rsw_fine_mixedcc.b8.ugrid UG3 : Quad Surface Faces= 28968 UG3 :...

  1. Subjugated in the Creative Industries The Fine Arts in Singapore

    DEFF Research Database (Denmark)

    Ooi, Can-Seng

    2011-01-01

    to economic value. Fine arts practices will not be as lucrative or popular as their counterparts in the other creative businesses; they will remain poor cousins in the creative industries. Essentially, the fine arts are being subjugated in the creative industries and the Singaporean art world is being changed....

  2. Selective separation of fine particles by a new flotation approach

    NARCIS (Netherlands)

    Mulleneers, H.A.E.; Koopal, L.K.; Bruning, H.; Rulkens, W.H.

    2002-01-01

    Fine particles often create problems in flotation applications. In this article a new laboratory flotation system for the selective separation of small particles was designed and tested. The device contains an active counter current sedimentation that should prevent entrainment of the fine

  3. Production and reproduction norms of fine woolled Merino sheep on ...

    African Journals Online (AJOL)

    Willem J Olivier

    Abstract. The objective of this study was to establish a fine woolled Merino flock at the Grootfontein. Agricultural Development Institute in order to evaluate the production and reproduction performance of fine woolled animals against a control line on natural pastures in the Karoo. Data collected from 1989 to 1999 were used ...

  4. Fine Sediment Effects on Brook Trout Eggs in Laboratory Streams

    Science.gov (United States)

    David G. Argent; Patricia A. Flebbe

    1999-01-01

    This study was designed to determine effects of different fine sediments (0.43-0.85 mm in diameter) on survival of brook trout (Salvelinus fontinalis) eggs during early developmental stages under laboratory conditions. Intragravel permeability and dissolved oxygen declined with increasing fine sediment amounts. Survival at each developmental stage...

  5. Relations between Playing Activities and Fine Motor Development

    Science.gov (United States)

    Suggate, Sebastian; Stoeger, Heidrun; Pufke, Eva

    2017-01-01

    Children's fine motor skills (FMS) are being increasingly recognized as an important aspect of preschool development; yet, we know very little about the experiences that foster their development. We utilized a parent-administered children's fine and gross motor activities questionnaire (MAQ) to investigate links with FMS. We recruited a sample of…

  6. Helping Preschoolers Prepare for Writing: Developing Fine Motor Skills

    Science.gov (United States)

    Huffman, J. Michelle; Fortenberry, Callie

    2011-01-01

    Early childhood is the most intensive period for the development of physical skills. Writing progress depends largely on the development of fine motor skills involving small muscle movements of the hand. Young children need to participate in a variety of developmentally appropriate activities intentionally designed to promote fine motor control.…

  7. Discordance Rate between Thyroid Fine Needle Aspiration Cytology ...

    African Journals Online (AJOL)

    Discordance Rate between Thyroid Fine Needle Aspiration Cytology and Histopathologic Diagnosis. Wondwossen Ergete, Daniel Abebe. Abstract. Fine Needle Aspiration (FNA) of the thyroid is a low cost procedure, which can give an accurate diagnosis promptly. The objective of this study was to assess the diagnostic ...

  8. Fine root architecture of nine North American trees

    Science.gov (United States)

    Kurt S. Pregitzer; Jared L. DeForest; Andrew J. Burton; Michael F. Allen; Roger W. Ruess; Ronald L. Hendrick

    2002-01-01

    The fine roots of trees are concentrated on lateral branches that arise from perennial roots. They are important in the acquisition of water and essential nutrients, and at the ecosystem level, they make a significant contribution to biogeochemical cycling. Fine roots have often been studied according to arbitrary size classes, e.g., all roots less than 1 or 2 mm in...

  9. Importance of Fine Needle Aspiration in Evaluation of Single ...

    African Journals Online (AJOL)

    Background: Improvements in the sensitivity and specificity of biochemical thyroid tests, as well as the development of fine needle aspiration biopsy (FNA) and improved cytological techniques, have dramatically impacted clinical strategies for detecting and treating thyroid disorders. Fine needle aspiration is a safe and ...

  10. Usage of Crushed Concrete Fines in Decorative Concrete

    Science.gov (United States)

    Pilipenko, Anton; Bazhenova, Sofia

    2017-10-01

    The article is devoted to the questions of usage of crushed concrete fines from concrete scrap for the production of high-quality decorative composite materials based on mixed binder. The main problem in the application of crushed concrete in the manufacture of decorative concrete products is extremely low decorative properties of crushed concrete fines itself, as well as concrete products based on them. However, crushed concrete fines could have a positive impact on the structure of the concrete matrix and could improve the environmental and economic characteristics of the concrete products. Dust fraction of crushed concrete fines contains non-hydrated cement grains, which can be opened in screening process due to the low strength of the contact zone between the hydrated and non-hydrated cement. In addition, the screening process could increase activity of the crushed concrete fines, so it can be used as a fine aggregate and filler for concrete mixes. Previous studies have shown that the effect of the usage of the crushed concrete fines is small and does not allow to obtain concrete products with high strength. However, it is possible to improve the efficiency of the crushed concrete fines as a filler due to the complex of measures prior to mixing. Such measures may include a preliminary mechanochemical activation of the binder (cement binder, iron oxide pigment, silica fume and crushed concrete fines), as well as the usage of polycarboxylate superplasticizers. The development of specific surface area of activated crushed concrete fines ensures strong adhesion between grains of binder and filler during the formation of cement stone matrix. The particle size distribution of the crushed concrete fines could achieve the densest structure of cement stone matrix and improve its resistance to environmental effects. The authors examined the mechanisms of structure of concrete products with crushed concrete fines as a filler. The results of studies of the properties of

  11. Genetic effects

    International Nuclear Information System (INIS)

    Kato, Hiroo

    1975-01-01

    In 1948-1953 a large scale field survey was conducted to investigate the possible genetic effects of A-bomb radiation on over 70,000 pregnancy terminations in the cities of Hiroshima and Nagasaki. The indices of possible genetic effect including sex ratio, birth weight, frequency of malformation, stillbirth, neonatal death, deaths within 9 months and anthropometric measurements at 9 months of age for these children were investigated in relation to their parent's exposure status to the A-bomb. There were no detectable genetic effects in this sample, except for a slight change in sex ratio which was in the direction to be expected if exposure had induced sex-linked lethal mutations. However, continued study of the sex ratio, based upon birth certificates in Hiroshima and Nagasaki for 1954-1962, did not confirm the earlier trend. Mortality in these children of A-bomb survivors is being followed using a cohort of 54,000 subjects. No clearly significant effect of parental exposure on survival of the children has been demonstrated up to 1972 (age 17 on the average). On the basis of the regression data, the minimal genetic doubling dose of this type of radiation for mutations resulting in death is estimated at 46 rem for the father and 125 rem for the mother. (auth.)

  12. Genetic Recombination

    Science.gov (United States)

    Whitehouse, H. L. K.

    1973-01-01

    Discusses the mechanisms of genetic recombination with particular emphasis on the study of the fungus Sordaria brevicollis. The study of recombination is facilitated by the use of mutants of this fungus in which the color of the ascospores is affected. (JR)

  13. Melanoma genetics

    DEFF Research Database (Denmark)

    Read, Jazlyn; Wadt, Karin A W; Hayward, Nicholas K

    2015-01-01

    Approximately 10% of melanoma cases report a relative affected with melanoma, and a positive family history is associated with an increased risk of developing melanoma. Although the majority of genetic alterations associated with melanoma development are somatic, the underlying presence of herita......Approximately 10% of melanoma cases report a relative affected with melanoma, and a positive family history is associated with an increased risk of developing melanoma. Although the majority of genetic alterations associated with melanoma development are somatic, the underlying presence...... in a combined total of approximately 50% of familial melanoma cases, the underlying genetic basis is unexplained for the remainder of high-density melanoma families. Aside from the possibility of extremely rare mutations in a few additional high penetrance genes yet to be discovered, this suggests a likely...... polygenic component to susceptibility, and a unique level of personal melanoma risk influenced by multiple low-risk alleles and genetic modifiers. In addition to conferring a risk of cutaneous melanoma, some 'melanoma' predisposition genes have been linked to other cancers, with cancer clustering observed...

  14. Studies on fire and explosion hazards of zircaloy fines

    International Nuclear Information System (INIS)

    Andriessen, H.; Kroebel, R.; Bereznai, T.; Wurtz, R.; Hattwig, M.; Hensel, W.; Osswald, R.

    1987-01-01

    To promote the safe handling of the Zry-fines arising in a reprocessing plant, an experimental program was conducted under which the fire and explosion hazards were assessed. In order to evaluate the effect of irradiation on the ignition and explosion properties, irradiated and unirradiated Zry-fines, generated with the same tool, were investigated and compared which each other. Irradiated Zry-fines exhibit a higher fire and explosion hazard than non-irradiated fines passing the same sieve. These differences are caused mainly by the irradiation induced embrittlement and hardening of the Zry-hulls. On account of these different physical properties the generated fines have got a finer grain size due to a more spherical shape resulting in a higher bulk density and a lower mean value. These secondary irradiation effects seem to determine the lower minimum ignition temperatures and the higher values for the maximum explosion pressure and rate of pressure rise

  15. Fines classification based on sensitivity to pore-fluid chemistry

    Science.gov (United States)

    Jang, Junbong; Santamarina, J. Carlos

    2016-01-01

    The 75-μm particle size is used to discriminate between fine and coarse grains. Further analysis of fine grains is typically based on the plasticity chart. Whereas pore-fluid-chemistry-dependent soil response is a salient and distinguishing characteristic of fine grains, pore-fluid chemistry is not addressed in current classification systems. Liquid limits obtained with electrically contrasting pore fluids (deionized water, 2-M NaCl brine, and kerosene) are combined to define the soil “electrical sensitivity.” Liquid limit and electrical sensitivity can be effectively used to classify fine grains according to their fluid-soil response into no-, low-, intermediate-, or high-plasticity fine grains of low, intermediate, or high electrical sensitivity. The proposed methodology benefits from the accumulated experience with liquid limit in the field and addresses the needs of a broader range of geotechnical engineering problems.

  16. Fines Classification Based on Sensitivity to Pore-Fluid Chemistry

    KAUST Repository

    Jang, Junbong

    2015-12-28

    The 75-μm particle size is used to discriminate between fine and coarse grains. Further analysis of fine grains is typically based on the plasticity chart. Whereas pore-fluid-chemistry-dependent soil response is a salient and distinguishing characteristic of fine grains, pore-fluid chemistry is not addressed in current classification systems. Liquid limits obtained with electrically contrasting pore fluids (deionized water, 2-M NaCl brine, and kerosene) are combined to define the soil "electrical sensitivity." Liquid limit and electrical sensitivity can be effectively used to classify fine grains according to their fluid-soil response into no-, low-, intermediate-, or high-plasticity fine grains of low, intermediate, or high electrical sensitivity. The proposed methodology benefits from the accumulated experience with liquid limit in the field and addresses the needs of a broader range of geotechnical engineering problems. © ASCE.

  17. J. Genet. classic 235

    Indian Academy of Sciences (India)

    Unknown

    Journal of Genetics, Vol. 83, No. 3, December 2004. 235. Page 2. J. Genet. classic. Journal of Genetics, Vol. 83, No. 3, December 2004. 236. Page 3. J. Genet. classic. Journal of Genetics, Vol. 83, No. 3, December 2004. 237. Page 4. J. Genet. classic. Journal of Genetics, Vol. 83, No. 3, December 2004. 238. Page 5 ...

  18. Genetic effects

    International Nuclear Information System (INIS)

    Bender, M.A.; Abrahamson, S.; Denniston, C.; Schull, W.J.

    1989-01-01

    In this chapter, we present a comprehensive analysis of the major classes of genetic diseases that would be increased as a result of an increased gonadal radiation exposure to a human population. The risk analysis takes on two major forms: the increase in genetic disease that would be observed in the immediate offspring of the exposed population, and the subsequent transmission of the newly induced mutations through future generations. The major classes of genetic disease will be induced at different frequencies, and will also impact differentially in terms of survivability and fertility on the affected individuals and their descendants. Some classes of disease will be expected to persist for only a few generations at most. Other types of genetic disease will persist through a longer period. The classes of genetic diseases studied are: dominant gene mutation, X-linked gene mutation, chromosome disorders and multifactorial disorders which involve the interaction of many mutant genes and environmental factors. For each of these classes we have derived the general equations of mutation induction for the male and female germ cells of critical importance in the mutation process. The frequency of induced mutations will be determined initially by the dose received, the type of radiation and, to some extent at high dose, by the manner in which the dose is received. We have used the modeling analyses to predict the outcomes for two nuclear power plant accident scenarios, the first in which the population receives a chronic dose of 0.1 Gy (10 rad) over a 50-year period, the second in which an equivalent population receives an acute dose of 2 Gy. In both cases the analyses are projected over a period of five generations

  19. J. Genet. classic 9

    Indian Academy of Sciences (India)

    Journal of Genetics, Vol. 88, No. 1, April 2009. 9. Page 2. J. Genet. classic. 10. Journal of Genetics, Vol. 88, No. 1, April 2009. Page 3. J. Genet. classic. Journal of Genetics, Vol. 88, No. 1, April 2009. 11. Page 4. J. Genet. classic. 12. Journal of Genetics, Vol. 88, No. 1, April 2009. Page 5. J. Genet. classic. Journal of Genetics ...

  20. The Irish DNA Atlas: Revealing Fine-Scale Population Structure and History within Ireland.

    Science.gov (United States)

    Gilbert, Edmund; O'Reilly, Seamus; Merrigan, Michael; McGettigan, Darren; Molloy, Anne M; Brody, Lawrence C; Bodmer, Walter; Hutnik, Katarzyna; Ennis, Sean; Lawson, Daniel J; Wilson, James F; Cavalleri, Gianpiero L

    2017-12-08

    The extent of population structure within Ireland is largely unknown, as is the impact of historical migrations. Here we illustrate fine-scale genetic structure across Ireland that follows geographic boundaries and present evidence of admixture events into Ireland. Utilising the 'Irish DNA Atlas', a cohort (n = 194) of Irish individuals with four generations of ancestry linked to specific regions in Ireland, in combination with 2,039 individuals from the Peoples of the British Isles dataset, we show that the Irish population can be divided in 10 distinct geographically stratified genetic clusters; seven of 'Gaelic' Irish ancestry, and three of shared Irish-British ancestry. In addition we observe a major genetic barrier to the north of Ireland in Ulster. Using a reference of 6,760 European individuals and two ancient Irish genomes, we demonstrate high levels of North-West French-like and West Norwegian-like ancestry within Ireland. We show that that our 'Gaelic' Irish clusters present homogenous levels of ancient Irish ancestries. We additionally detect admixture events that provide evidence of Norse-Viking gene flow into Ireland, and reflect the Ulster Plantations. Our work informs both on Irish history, as well as the study of Mendelian and complex disease genetics involving populations of Irish ancestry.

  1. The Prevalence and Phenomenology of Repetitive Behavior in Genetic Syndromes

    Science.gov (United States)

    Moss, Joanna; Oliver, Chris; Arron, Kate; Burbidge, Cheryl; Berg, Katy

    2009-01-01

    We investigated the prevalence and phenomenology of repetitive behavior in genetic syndromes to detail profiles of behavior. The Repetitive Behaviour Questionnaire (RBQ) provides fine-grained identification of repetitive behaviors. The RBQ was employed to examine repetitive behavior in Angelman (N = 104), Cornelia de Lange (N = 101), Cri-du-Chat…

  2. Stored carbon partly fuels fine-root respiration but is not used for production of new fine roots.

    Science.gov (United States)

    Lynch, Douglas J; Matamala, Roser; Iversen, Colleen M; Norby, Richard J; Gonzalez-Meler, Miquel A

    2013-07-01

    The relative use of new photosynthate compared to stored carbon (C) for the production and maintenance of fine roots, and the rate of C turnover in heterogeneous fine-root populations, are poorly understood. We followed the relaxation of a (13)C tracer in fine roots in a Liquidambar styraciflua plantation at the conclusion of a free-air CO(2) enrichment experiment. Goals included quantifying the relative fractions of new photosynthate vs stored C used in root growth and root respiration, as well as the turnover rate of fine-root C fixed during [CO(2)] fumigation. New fine-root growth was largely from recent photosynthate, while nearly one-quarter of respired C was from a storage pool. Changes in the isotopic composition of the fine-root population over two full growing seasons indicated heterogeneous C pools; 2 yr. Compared to a one-pool model, a two-pool model for C turnover in fine roots (with 5 and 0.37 yr(-1) turnover times) doubles the fine-root contribution to forest NPP (9-13%) and supports the 50% root-to-soil transfer rate often used in models. No claim to original US government works. New Phytologist © 2013 New Phytologist Trust.

  3. Stored carbon partly fuels fine-root respiration but is not used for production of new fine roots

    Energy Technology Data Exchange (ETDEWEB)

    Lynch, Douglas J [ORNL; Matamala-Paradeda, Roser [ORNL; Iversen, Colleen M [ORNL; Norby, Richard J [ORNL; Gonzalez-Meler, Miguel A [ORNL

    2013-01-01

    The relative use of new photosynthate compared to stored C for the production and maintenance of fine roots, and the rate of C turnover in heterogeneous fine-root populations, are poorly understood. We followed the relaxation of a 13C tracer in fine roots in a Liquidambar styraciflua plantation at the conclusion of a free-air CO2 enrichment experiment. Goals included quantifying the relative fractions of new photosynthate versus stored C used in root growth and root respiration, as well as the turnover rate of fine-root C fixed during [CO2] fumigation. New fine-root growth was largely from recent photosynthate, while nearly one-quarter of respired C was from a storage pool. Changes in the isotopic composition of the fine-root population over two full growing seasons indicated heterogeneous C pools; less than 10% of root C had a residence time < 3 months, while a majority of root C had a residence time > 2 years. Compared to a 1-pool model, a 2-pool model for C turnover in fine roots (with 5 and 0.37 yr-1 turnover times) doubles the fine-root contribution to forest NPP (9-13%) and supports the 50% root-to-soil transfer rate often used in models.

  4. Prenatal Genetic Screening Tests

    Science.gov (United States)

    ... FAQs Prenatal Genetic Screening Tests Page Navigation ▼ ACOG Pregnancy Book Prenatal Genetic Screening Tests Patient Education FAQs Prenatal Genetic Screening Tests Patient Education Pamphlets - ...

  5. The fine particle emissions of energy production in Finland

    International Nuclear Information System (INIS)

    Ohlstroem, M.

    1998-01-01

    The main purpose of this master's thesis was to define the fine particle (PM2.5, diameter under 2,5 μm) emissions of the energy production and to compare the calculated emission factors between different energy production concepts. The purpose was also to define what is known about fine particle emissions and what should still be studied/measured. The purpose was also to compare briefly the fine particle emissions of energy production and vehicle traffic, and their correlations to the fine particle concentrations of urban air. In the theory part of this work a literature survey was made about fine particles in energy production, especially how they form and how they are separated from the flue gas. In addition, the health effects caused by fine particles, and different measuring instruments were presented briefly. In the experimental part of this work, the aim was to find out the fine particle emissions of different energy production processes by calculating specific emission factors (mg/MJ fuel ) from powerplants' annual total particulate matter emissions (t/a), which were obtained from VAHTI-database system maintained by the Finnish Environmental Institute, and by evaluating the share of fine particles from total emissions with the help of existing measurement results. Only those energy production processes which produce significantly direct emissions of solid particles have been treated (pulverised combustion and oil burners from burner combustion, fluidized bed combustion processes, grate boilers, recovery boilers and diesel engines). The processes have been classified according to boiler type, size category, main fuel and also according to dust separation devices. To be able to compare different energy production processes, shared specific emission factor have been calculated for the similar subprocesses. The fine particle emissions depend strongest on the boiler size category and dust separation devices used. Spent fuel or combustion technique does not have

  6. Genetic effects

    International Nuclear Information System (INIS)

    Abrahamson, S.; Bender, M.; Denniston, C.; Schull, W.

    1985-01-01

    Modeling analyses are used to predict the outcomes for two nuclear power plant accident scenarios, the first in which the population received a chronic dose of 0.1 Gy (10 rad) over a 50 year period, the second in which an equivalent population receives acute dose of 2 Gy. In both cases the analyses are projected over a period of five generations. The risk analysis takes on two major forms: the increase in genetic disease that would be observed in the immediate offspring of the exposed population, and the subsequent transmission of the newly induced mutations through future generations. The classes of genetic diseases studied are: dominant gene mutation, X-linked gene mutation, chromosome disorders and multifactorial disorders which involve the interaction of many mutant genes and environmental factors. 28 references, 3 figures, 5 tables

  7. Genetic Prediction.

    Science.gov (United States)

    Turkheimer, Eric

    2015-01-01

    The fundamental reason that the genetics of behavior has remained so controversial for so long is that the layer of theory between data and their interpretation is thicker and more opaque than in more established areas of science. The finding that variations in tiny snippets of DNA have small but detectable relations to variation in behavior surprises no one, at least no one who was paying attention to the twin studies. How such snippets of DNA are related to differences in behavior-known as the gene-to-behavior pathway-is the great theoretical problem of modern behavioral genetics. Given that intentional human breeding is a horrific prospect, what kind of technology might we want (or fear) out of human behavioral genetics? One possibility is a technology that could predict important behavioral characteristics of humans based on their genomes alone. A moment's thought suggests significant benefits and risks that might be associated with such a possibility, but for the moment, just consider how convincing it would be if on the day of a baby's birth we could make meaningful predictions about whether he or she would become a concert pianist or an alcoholic. This article will consider where we are right now as regards that possibility, using human height and intelligence as the primary examples. © 2015 The Hastings Center.

  8. FINE-GRAINEDCELLULAR CONCRETE CREEP ANALYSIS TECHNIQUE WITH CONSIDERATION FORCARBONATION

    Directory of Open Access Journals (Sweden)

    M. A. Gaziev

    2015-01-01

    Full Text Available The article considers the creep and creep deformation analysis technique in fine-grainedcellular concrete with consideration for carbonation and assurance requirements for the repairing properties and seismic stability. The procedure for determining the creep of fine-grainedcellular concrete is proposed with account of its carbonationby atmospheric carbon dioxide. It has been found theoretically and experimentally that the proposed technique allows obtaining reproducible results and can be recommended for creep determination of fine-grainedcellular concretes, including repairingones, taking into account their carbonation.

  9. Cancer Genetics Services Directory

    Science.gov (United States)

    ... Services Directory Cancer Prevention Overview Research NCI Cancer Genetics Services Directory This directory lists professionals who provide services related to cancer genetics (cancer risk assessment, genetic counseling, genetic susceptibility testing, ...

  10. Generalization and fine mapping of European ancestry-based central adiposity variants in African ancestry populations.

    Science.gov (United States)

    Yoneyama, S; Yao, J; Guo, X; Fernandez-Rhodes, L; Lim, U; Boston, J; Buzková, P; Carlson, C S; Cheng, I; Cochran, B; Cooper, R; Ehret, G; Fornage, M; Gong, J; Gross, M; Gu, C C; Haessler, J; Haiman, C A; Henderson, B; Hindorff, L A; Houston, D; Irvin, M R; Jackson, R; Kuller, L; Leppert, M; Lewis, C E; Li, R; Le Marchand, L; Matise, T C; Nguyen, K-Dh; Chakravarti, A; Pankow, J S; Pankratz, N; Pooler, L; Ritchie, M D; Bien, S A; Wassel, C L; Chen, Y-D I; Taylor, K D; Allison, M; Rotter, J I; Schreiner, P J; Schumacher, F; Wilkens, L; Boerwinkle, E; Kooperberg, C; Peters, U; Buyske, S; Graff, M; North, K E

    2017-02-01

    Central adiposity measures such as waist circumference (WC) and waist-to-hip ratio (WHR) are associated with cardiometabolic disorders independently of body mass index (BMI) and are gaining clinically utility. Several studies report genetic variants associated with central adiposity, but most utilize only European ancestry populations. Understanding whether the genetic associations discovered among mainly European descendants are shared with African ancestry populations will help elucidate the biological underpinnings of abdominal fat deposition. To identify the underlying functional genetic determinants of body fat distribution, we conducted an array-wide association meta-analysis among persons of African ancestry across seven studies/consortia participating in the Population Architecture using Genomics and Epidemiology (PAGE) consortium. We used the Metabochip array, designed for fine-mapping cardiovascular-associated loci, to explore novel array-wide associations with WC and WHR among 15 945 African descendants using all and sex-stratified groups. We further interrogated 17 known WHR regions for African ancestry-specific variants. Of the 17 WHR loci, eight single-nucleotide polymorphisms (SNPs) located in four loci were replicated in the sex-combined or sex-stratified meta-analyses. Two of these eight independently associated with WHR after conditioning on the known variant in European descendants (rs12096179 in TBX15-WARS2 and rs2059092 in ADAMTS9). In the fine-mapping assessment, the putative functional region was reduced across all four loci but to varying degrees (average 40% drop in number of putative SNPs and 20% drop in genomic region). Similar to previous studies, the significant SNPs in the female-stratified analysis were stronger than the significant SNPs from the sex-combined analysis. No novel associations were detected in the array-wide analyses. Of 17 previously identified loci, four loci replicated in the African ancestry populations of this

  11. A genetic atlas of human admixture history

    Science.gov (United States)

    Hellenthal, Garrett; Busby, George B.J.; Band, Gavin; Wilson, James F.; Capelli, Cristian

    2014-01-01

    Modern genetic data combined with appropriate statistical methods have the potential to contribute substantially to our understanding of human history. We have developed an approach that exploits the genomic structure of admixed populations to date and characterize historical mixture events at fine scales. We used this to produce an atlas of worldwide human admixture history, constructed using genetic data alone and encompassing over 100 events occurring over the past 4,000 years. We identify events whose dates and participants suggest they describe genetic impacts of the Mongol Empire, Arab slave trade, Bantu expansion, first millennium CE migrations in eastern Europe, and European colonialism, as well as unrecorded events, revealing admixture to be an almost universal force shaping human populations. PMID:24531965

  12. The genetic and environmental factors for keratoconus.

    Science.gov (United States)

    Gordon-Shaag, Ariela; Millodot, Michel; Shneor, Einat; Liu, Yutao

    2015-01-01

    Keratoconus (KC) is the most common cornea ectatic disorder. It is characterized by a cone-shaped thin cornea leading to myopia, irregular astigmatism, and vision impairment. It affects all ethnic groups and both genders. Both environmental and genetic factors may contribute to its pathogenesis. This review is to summarize the current research development in KC epidemiology and genetic etiology. Environmental factors include but are not limited to eye rubbing, atopy, sun exposure, and geography. Genetic discoveries have been reviewed with evidence from family-based linkage analysis and fine mapping in linkage region, genome-wide association studies, and candidate genes analyses. A number of genes have been discovered at a relatively rapid pace. The detailed molecular mechanism underlying KC pathogenesis will significantly advance our understanding of KC and promote the development of potential therapies.

  13. Fine Particle Matter (PM2.5) Design Value

    Data.gov (United States)

    U.S. Environmental Protection Agency — Fine particulate matter or PM2.5 (total mass of particles below 2.5 micron is diameter) is known to cause adverse health effects in humans.See the following websites...

  14. Vibration-Assisted Handling of Dry Fine Powders

    Directory of Open Access Journals (Sweden)

    Paul Dunst

    2018-04-01

    Full Text Available Since fine powders tend strongly to adhesion and agglomeration, their processing with conventional methods is difficult or impossible. Typically, in order to enable the handling of fine powders, chemicals are added to increase the flowability and reduce adhesion. This contribution shows that instead of additives also vibrations can be used to increase the flowability, to reduce adhesion and cohesion, and thus to enable or improve processes such as precision dosing, mixing, and transport of very fine powders. The methods for manipulating powder properties are described in detail and prototypes for experimental studies are presented. It is shown that the handling of fine powders can be improved by using low-frequency, high-frequency or a combination of low- and high-frequency vibration.

  15. Fine 5 tantsib Bachi järgi

    Index Scriptorium Estoniae

    2016-01-01

    Tantsuteater Fine 5 toob lavale lavastuse "HTK ehk hästi treenitud klaviir". Teos on loodud J.S. Bachi "Hästitempereeritud klaviiri" (HTK) esimese osa muusikale. Koreograafid Tiina Ollesk ja Renee Nõmmik

  16. Two proofs of Fine's theorem

    International Nuclear Information System (INIS)

    Halliwell, J.J.

    2014-01-01

    Fine's theorem concerns the question of determining the conditions under which a certain set of probabilities for pairs of four bivalent quantities may be taken to be the marginals of an underlying probability distribution. The eight CHSH inequalities are well-known to be necessary conditions, but Fine's theorem is the striking result that they are also sufficient conditions. Here two transparent and self-contained proofs of Fine's theorem are presented. The first is a physically motivated proof using an explicit local hidden variables model. The second is an algebraic proof which uses a representation of the probabilities in terms of correlation functions. - Highlights: • A discussion of the various approaches to proving Fine's theorem. • A new physically-motivated proof using a local hidden variables model. • A new algebraic proof. • A new form of the CHSH inequalities

  17. Indirect determination of particle shape of fine aggregate.

    Science.gov (United States)

    1973-01-01

    Three methods developed by various agencies for measuring indirectly the particle shapes of fine aggregates were used along with a visual classification procedure to study aggregates from eight commercial sources along with a reference sand. The meth...

  18. Process for preparing fine grain silicon carbide powder

    Science.gov (United States)

    Wei, G.C.

    Method of producing fine-grain silicon carbide powder comprises combining methyltrimethoxysilane with a solution of phenolic resin, acetone and water or sugar and water, gelling the resulting mixture, and then drying and heating the obtained gel.

  19. Fine 5 segab vett, liiva ja videot / Tiit Tuumalu

    Index Scriptorium Estoniae

    Tuumalu, Tiit, 1971-

    2000-01-01

    Tantsutrupi Five 5 lavastustest (trupp tegutseb 1992. a., on väja kasvanud tantsuteatrist Nordic Star), ka 1992. a. Fine 5 juurde loodud stuudio-koolist, kus on võimalik õppida modern- ja nüüdistantsu

  20. Distortion product otoacoustic emission fine structure of symphony orchestra musicians

    DEFF Research Database (Denmark)

    Reuter, Karen; Hammershøi, Dorte

    2006-01-01

    losses than puretone audiometry. The distortion product otoacoustic emission (DPOAE) fine structure is obtained when the ear is stimulated by dual tone stimuli using a high frequency resolution. It is characterized by quasi-periodic variations across frequency, as it can be observed in the hearing...... threshold microstructure also. In this study DPOAE fine structures and hearing thresholds are obtained for symphony orchestra musicians both for left and right ears and before and after the orchestra rehearsal. DPOAE fine structures are analyzed with an automatic classification algorithm, which describes...... the ripple pattern by parameters. A difference between left and right ears could be detected for the DPOAE level but not for the fine structure parameters. No difference between the measures taken before and after exposure could be observed....

  1. Fine coal processing with dense-medium cyclones

    CSIR Research Space (South Africa)

    De Korte, GJ

    2012-10-01

    Full Text Available . The paper provides a brief overview of past and current application of dense medium cyclones in the processing of fine coal and reviews some of the important considerations for the successful application of the technique....

  2. AQUEOUS BIPHASE EXTRACTION FOR PROCESSING OF FINE COAL

    Energy Technology Data Exchange (ETDEWEB)

    K. Osseo-Asare; X. Zeng

    2002-01-01

    The objective of this research project is to develop an aqueous biphase extraction process for the treatment of fine coals. Aqueous biphase extraction is an advanced separation technology that relies on the ability of an aqueous system consisting of a water-soluble polymer and another component, e.g., another polymer, an inorganic salt, or a nonionic surfactant, to separate into two immiscible aqueous phases. The principle behind the partition of solid particles in aqueous biphase systems is the physicochemical interaction between the solid surface and the surrounding liquid solution. In order to remove sulfur and mineral matter from fine coal with aqueous biphasic extraction, it is necessary to know the partitioning behavior of coal, as well as the inorganic mineral components. Therefore, in this research emphasis was placed on the partitioning behavior of fine coal particles as well as model fine inorganic particles in aqueous biphase systems.

  3. Fine Water Mist Fire Extinguisher for Spacecraft, Phase II

    Data.gov (United States)

    National Aeronautics and Space Administration — This three phase SBIR project from ADA Technologies Inc. (ADA) builds upon the experience of ADA in development of fine water mist (FWM) fire suppression technology....

  4. AQUEOUS BIPHASE EXTRACTION FOR PROCESSING OF FINE COAL; FINAL

    International Nuclear Information System (INIS)

    K. Osseo-Asare; X. Zeng

    2002-01-01

    The objective of this research project is to develop an aqueous biphase extraction process for the treatment of fine coals. Aqueous biphase extraction is an advanced separation technology that relies on the ability of an aqueous system consisting of a water-soluble polymer and another component, e.g., another polymer, an inorganic salt, or a nonionic surfactant, to separate into two immiscible aqueous phases. The principle behind the partition of solid particles in aqueous biphase systems is the physicochemical interaction between the solid surface and the surrounding liquid solution. In order to remove sulfur and mineral matter from fine coal with aqueous biphasic extraction, it is necessary to know the partitioning behavior of coal, as well as the inorganic mineral components. Therefore, in this research emphasis was placed on the partitioning behavior of fine coal particles as well as model fine inorganic particles in aqueous biphase systems

  5. Tests for Plastic Fines in Aggregates Related to Stripping in Asphalt Paving Mixtures

    Science.gov (United States)

    1988-03-01

    This study was undertaken for determining the best aggregate test method that indicates the presence of detrimental plastic fines in the fine aggregate, which may induce stripping in hot mix asphalt (HMA) mixtures. Ten fine aggregates representing a ...

  6. 77 FR 24988 - Manufacturer of Controlled Substances; Notice of Registration; ISP Freetown Fine Chemicals

    Science.gov (United States)

    2012-04-26

    ... Enforcement Administration Manufacturer of Controlled Substances; Notice of Registration; ISP Freetown Fine... 64746, ISP Freetown Fine Chemicals, 238 South Main Street, Assonet, Massachusetts 02702, made...) and determined that the registration of ISP Freetown Fine Chemicals, to manufacture the listed basic...

  7. FINE THERMOHALINE STRUCTURE OF THE COLOMBIAN PACIFIC OCEAN

    Directory of Open Access Journals (Sweden)

    Villegas Nancy

    2004-06-01

    Full Text Available The present document shows strata classification of the Colombian Pacific Ocean - COLUMBIAN PACIFIC OCEAN, done by first time according its fine thermohaline structure, based on temperature and salinity fields analysis. Layers, where different mechanisms of fine structure predominate, were determined and everywhere in the area a stable stratification was observed, although conditions for not stability as a result of the double diffusion were present.

  8. Current status and application of fine screening technology in China

    Science.gov (United States)

    Chernova, E. V.; Chernov, D. V.

    2017-10-01

    The paper presents data on the design and technical parameters of high frequency vibrating screens, which are produced by Chinese manufacturer - company Landsky Tech Ltd. The technology of high frequency vibration is widely used at mining and metallurgical industries to separate fine and ultra-fine particles from the flow of dry material or pulp. The paper contains different types of screening systems, description, advantages and disadvantages of equipment and test results from mineral processing plants.

  9. The fine-structure constant before quantum mechanics

    CERN Document Server

    Kragh, H

    2003-01-01

    This paper focuses on the early history of the fine-structure constant, largely the period until 1925. Contrary to what is generally assumed, speculations concerning the interdependence of the elementary electric charge and Planck's constant predated Arnold Sommerfeld's 1916 discussion of the dimensionless constant. This paper pays particular attention to a little known work from 1914 in which G N Lewis and E Q Adams derived what is effectively a numerical expression for the fine-structure constant.

  10. The potential of space exploration for the fine arts

    Science.gov (United States)

    Mclaughlin, William I.

    1993-01-01

    Art provides an integrating function between the 'upper' and 'lower' centers of the human psyche. The nature of this function can be made more specific through the triune model of the brain. The evolution of the fine arts - painting, drawing, architecture, sculpture, literature, music, dance, and drama, plus cinema and mathematics-as-a-fine-art - are examined in the context of their probable stimulations by space exploration: near term and long term.

  11. Flocculation of fine fluorite particles with Corynebacterium xerosis

    OpenAIRE

    Haas Sandra R.; Nascimento Fábio R.; Schneider Ivo André H.; Gaylarde Christine

    1999-01-01

    The treatment of fine particles dispersed in liquids is common in several industries and especially important in mineral processing. The efficiency of settling operations can be substantially increased by flocculation. The aim of this work was to study the flocculation of fine fluorite particles by the bacterium Corynebacterium xerosis. Flocculation tests, microelectrophoresis measurements and optical microscopy were used to evaluate flocculation. The results showed that C. xerosis cells adhe...

  12. Vilfredo Pareto e la fine del Sociale

    Directory of Open Access Journals (Sweden)

    Francesco Antonelli

    2017-08-01

    Full Text Available Il mondo contemporaneo è profondamente segnato dal declino delle pratiche e delle teorie sulla Società (Busino 1981: lì dove la modernità industriale è stata caratterizzata dal dominio “organicistico” dell’homo sociologicus, inteso come un attore definito dai suoi ruoli, integrato da strutture impersonali e parte di un sistema conflittuale prevalentemente economico (Dahrendorf 2010; Touraine 2008, la seconda modernità post-industriale e globale mette al centro il primato e l’autonomia dell’individuo. Questa fine della Società come fonte della moralità e dell’individuazione, al vertice della quale vi era lo Stato-nazione, ha dato vita a tre discorsi teorici, sospesi tra l’euristico e il normativo: il primo discorso promuove l’idea di una società degli individui che si autogoverna e si autoregola nel quadro del mercato globale, vista come la principale istituzione in grado di realizzare un equilibrio tra efficienza e soggettivazione; questo mercato non può comunque essere lasciato completamente a se stesso ma abbisogna di strumenti regolativi in grado di salvaguardare quel equilibrio: gli ordoliberalisti e, più in generale, i neoliberisti condividono questa posizione (Comisso 2017; Felice 2008; Foucault 2005; Röpke 2004. Il secondo discorso mette al centro l’idea di un soggetto personale, definito in maniera giusnaturalistica, che si oppone ai processi manipolativi e di dominio del sistema globale di potere. Questa idea di soggetto è anche la pietra angolare di ricostruzione possibile di un nuovo mondo caratterizzato dall’“universalismo delle differenze”: tra gli altri, Alain Touraine (2013; 1988, Martha Nussbaum (2013 e Nadia Urbinati (2011 condividono questo orientamento liberal. Il secondo discorso Infine, il terzo discorso ruota intorno ad un’idea di Sé desiderante e creativo che, attraverso idee come quelle di “moltitudine” (in luogo della categoria moderna di “popolo” e di “comune” (al

  13. Simple model for fine particle (dust) clouds in plasmas

    International Nuclear Information System (INIS)

    Totsuji, Hiroo

    2016-01-01

    Highlights: • Simple model of fine particle clouds in plasmas is proposed. • The model enables independent control of the size and the density. • The system with cylindrical or spherical symmetry under microgravity is treated. • The model is based on the enhanced charge neutrality in fine particle clouds. - Abstract: In the cloud of fine particles (dusts) in plasmas, the charge neutrality can be much enhanced due to large charge numbers of fine particles. The required condition is not difficult to satisfy even when their charge density is substantially smaller than electrons or ions. Based on this fact, a simple model of fine particle clouds is proposed and the cloud radius is related to the half-width, the radius where the density of surrounding plasmas drops by half, in cylindrically and spherically symmetric cases under microgravity. When fine particles are gradually introduced with parameters of surrounding plasma especially the half-width being fixed, the size of clouds first increases and then saturates at the value determined by the plasma half-width, giving a possibility to control the size and density of clouds independently.

  14. SHAPE ANALYSIS OF FINE AGGREGATES USED FOR CONCRETE

    Directory of Open Access Journals (Sweden)

    Huan He

    2016-12-01

    Full Text Available Fine aggregate is one of the essential components in concrete and significantly influences the material properties. As parts of natures, physical characteristics of fine aggregate are highly relevant to its behaviors in concrete. The most of previous studies are mainly focused on the physical properties of coarse aggregate due to the equipment limitations. In this paper, two typical fine aggregates, i.e. river sand and crushed rock, are selected for shape characterization. The new developed digital image analysis systems are employed as the main approaches for the purpose. Some other technical methods, e.g. sieve test, laser diffraction method are also used for the comparable references. Shape characteristics of fine aggregates with different origins but in similar size ranges are revealed by this study. Compared with coarse aggregate, fine grains of different origins generally have similar shape differences. These differences are more significant in surface texture properties, which can be easily identified by an advanced shape parameter: bluntness. The new image analysis method is then approved to be efficient for the shape characterization of fine aggregate in concrete.

  15. Simple model for fine particle (dust) clouds in plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Totsuji, Hiroo, E-mail: totsuji-09@t.okadai.jp

    2016-04-01

    Highlights: • Simple model of fine particle clouds in plasmas is proposed. • The model enables independent control of the size and the density. • The system with cylindrical or spherical symmetry under microgravity is treated. • The model is based on the enhanced charge neutrality in fine particle clouds. - Abstract: In the cloud of fine particles (dusts) in plasmas, the charge neutrality can be much enhanced due to large charge numbers of fine particles. The required condition is not difficult to satisfy even when their charge density is substantially smaller than electrons or ions. Based on this fact, a simple model of fine particle clouds is proposed and the cloud radius is related to the half-width, the radius where the density of surrounding plasmas drops by half, in cylindrically and spherically symmetric cases under microgravity. When fine particles are gradually introduced with parameters of surrounding plasma especially the half-width being fixed, the size of clouds first increases and then saturates at the value determined by the plasma half-width, giving a possibility to control the size and density of clouds independently.

  16. Fine genetic mapping of a locus controlling short internode length in melon (Cucumis melo L.)

    Science.gov (United States)

    Compact and dwarfing vining habits in melon (Cucumis melo L.; 2n = 2x = 24) may have commercial importance since they can contribute to the promotion of concentrated fruit set and can be planted in higher plant densities than standard vining types. A diminutive (dwarf) melon mutant line (PNU-D1) wi...

  17. Genetic fine structure analysis of helicobacter pylori isolates before and after treatment

    Directory of Open Access Journals (Sweden)

    Rekha T

    2003-01-01

    Full Text Available BACKGROUND: Eradication of H. pylori infection cures peptic ulcer disease and conversely, relapse is associated with reappearance of H. pylori infection. However, it is not clear whether the recurrence of ulcers following H. pylori eradication is due to recrudescence (identical strain of the previous infection or as a result of exogenous reinfection (different strain by another strain. The aim of the present study was to analyze the FAFLP patterns of pre and post treatment H. pylori samples to check if the recurrence was due to recrudescence or reinfection. MATERIALS AND METHODS: 24 of 30 duodenal ulcer (DU subjects screened for H. pylori infection were positive for H. pylori infection. The treatment regime included pantoprazole, ciprofloxacin and amoxicillin. The patients were called for a repeat endoscopy after one month and screened for H. pylori infection. FAFLP analysis and PCR for the cagA and vacA gene was performed for the pre and post treatment samples. RESULTS: Of the 24 positive H.pylori patients, only 6 were negative after treatment and the remaining 18 were positive for H.pylori infection. The analysis of the pre and post treatment samples of the 18 patients showed that the FAFLP profiles of the initial and follow-up pools were similar to one another. CONCLUSION: It can be concluded that in the present series of patients, reinfection was due to recrudescence of infection due to incomplete eradication. The study also suggests that DNA fingerprinting by FAFLP provides discriminatory and complementary data for identifying strains of H. pylori while monitoring therapy.

  18. Fine-scale genetic structure and social organization in female white-tailed deer

    Science.gov (United States)

    Christopher E. Comer; John C. Kilgo; Gino J. D' Angelo; Travis C. Glenn; Karl V. Miller

    2005-01-01

    Social behavior of white-tailed deer (Odocoileus virginianus) can have important management implications. The formation of matrilineal social groups among female deer has been documented and management strategies have been proposed based on this well-developed social structure. Using radiocollared (n = 17) and hunter or vehicle-killed (n = 21) does, we examined spatial...

  19. Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries.

    Science.gov (United States)

    Uren, Caitlin; Kim, Minju; Martin, Alicia R; Bobo, Dean; Gignoux, Christopher R; van Helden, Paul D; Möller, Marlo; Hoal, Eileen G; Henn, Brenna M

    2016-09-01

    Recent genetic studies have established that the KhoeSan populations of southern Africa are distinct from all other African populations and have remained largely isolated during human prehistory until ∼2000 years ago. Dozens of different KhoeSan groups exist, belonging to three different language families, but very little is known about their population history. We examine new genome-wide polymorphism data and whole mitochondrial genomes for >100 South Africans from the ≠Khomani San and Nama populations of the Northern Cape, analyzed in conjunction with 19 additional southern African populations. Our analyses reveal fine-scale population structure in and around the Kalahari Desert. Surprisingly, this structure does not always correspond to linguistic or subsistence categories as previously suggested, but rather reflects the role of geographic barriers and the ecology of the greater Kalahari Basin. Regardless of subsistence strategy, the indigenous Khoe-speaking Nama pastoralists and the N|u-speaking ≠Khomani (formerly hunter-gatherers) share ancestry with other Khoe-speaking forager populations that form a rim around the Kalahari Desert. We reconstruct earlier migration patterns and estimate that the southern Kalahari populations were among the last to experience gene flow from Bantu speakers, ∼14 generations ago. We conclude that local adoption of pastoralism, at least by the Nama, appears to have been primarily a cultural process with limited genetic impact from eastern Africa. Copyright © 2016 by the Genetics Society of America.

  20. Fine Mapping of the SCN Resistance Locus rhg1-b from PI 88788

    Directory of Open Access Journals (Sweden)

    Myungsik Kim

    2010-09-01

    Full Text Available Soybean cyst nematode (SCN ( Ichinohe is the most economically damaging soybean [ (L. Merr.] pest in the USA and genetic resistance is a key component for its control. Although SCN resistance is quantitative, the locus on chromosome 18 (formerly known as Linkage Group G confers a high level of resistance. The objective of this study was to fine-map the allele that is derived from plant introduction (PI 88788. F and F plants and F lines from crosses between SCN resistant and susceptible genotypes were tested with genetic markers to identify recombination events close to . Lines developed from these recombinant plants were then tested for resistance to the SCN isolate PA3, which originally had an HG type 0 phenotype, and with genetic markers. Analysis of lines carrying key recombination events positioned between the simple sequence repeat (SSR markers BARCSOYSSR_18_0090 and BARCSOYSSR_18_0094. This places to a 67-kb region of the ‘Williams 82’ genome sequence. The receptor-like kinase gene that has been previously identified as a candidate for the ‘Peking’-derived SCN resistant gene is adjacent to, but outside of, the interval defined in the present study.

  1. Martin Boundary of a Fine Domain and a Fatou-Naïm-Doob Theorem for Finely Superharmonic Functions

    DEFF Research Database (Denmark)

    El Kadiri, Mohamed; Fuglede, Bent

    2016-01-01

    We construct the Martin compactification U ¯ ¯ ¯ ¯    of a fine domain U in R n (n = 2) and the Riesz-Martin kernel K on U×U ¯ ¯ ¯ ¯    . We obtain the integral representation of finely superharmonic fonctions ≥ 0 on U in terms of K and establish the Fatou-Naim-Doob theorem in this setting....

  2. Fine-mapping diabetes-related traits, including insulin resistance, in heterogeneous stock rats.

    Science.gov (United States)

    Solberg Woods, Leah C; Holl, Katie L; Oreper, Daniel; Xie, Yuying; Tsaih, Shirng-Wern; Valdar, William

    2012-11-01

    Type 2 diabetes (T2D) is a disease of relative insulin deficiency resulting from both insulin resistance and beta cell failure. We have previously used heterogeneous stock (HS) rats to fine-map a locus for glucose tolerance. We show here that glucose intolerance in the founder strains of the HS colony is mediated by different mechanisms: insulin resistance in WKY and an insulin secretion defect in ACI, and we demonstrate a high degree of variability for measures of insulin resistance and insulin secretion in HS rats. As such, our goal was to use HS rats to fine-map several diabetes-related traits within a region on rat chromosome 1. We measured blood glucose and plasma insulin levels after a glucose tolerance test in 782 male HS rats. Using 97 SSLP markers, we genotyped a 68 Mb region on rat chromosome 1 previously implicated in glucose and insulin regulation. We used linkage disequilibrium mapping by mixed model regression with inferred descent to identify a region from 198.85 to 205.9 that contains one or more quantitative trait loci (QTL) for fasting insulin and a measure of insulin resistance, the quantitative insulin sensitivity check index. This region also encompasses loci identified for fasting glucose and Insulin_AUC (area under the curve). A separate <3 Mb QTL was identified for body weight. Using a novel penalized regression method we then estimated effects of alternative haplotype pairings under each locus. These studies highlight the utility of HS rats for fine-mapping genetic loci involved in the underlying causes of T2D.

  3. Source identification of fine-grained suspended sediment in the Kharaa River basin, northern Mongolia

    Energy Technology Data Exchange (ETDEWEB)

    Theuring, Philipp [Department of Aquatic Ecosystem Analysis and Management — ASAM, Helmholtz Centre for Environmental Research — UFZ, Brückstrasse 3a, D-39114 Magdeburg (Germany); Collins, Adrian L. [Sustainable Soils and Grassland Systems Department, Rothamsted Research, North Wyke, Okehampton, Devon EX20 2SB (United Kingdom); Rode, Michael [Department of Aquatic Ecosystem Analysis and Management — ASAM, Helmholtz Centre for Environmental Research — UFZ, Brückstrasse 3a, D-39114 Magdeburg (Germany)

    2015-09-01

    Fine sediment inputs into river systems can be a major source of nutrients and heavy metals and have a strong impact on water quality and ecosystem functions of rivers and lakes, including those in semiarid regions. However, little is known to date about the spatial distribution of sediment sources in most large scale river basins in Central Asia. Accordingly, a sediment source fingerprinting technique was used to assess the spatial sources of fine-grained (< 10 μm) sediment in the 15 000 km{sup 2} Kharaa River basin in northern Mongolia. Variation in geochemical composition (e.g. in Ti, Sn, Mo, Mn, As, Sr, B, U, Ca and Sb) was used for sediment source discrimination with geochemical composite fingerprints based on Genetic Algorithm (GA)-driven Discriminant Function Analysis, the Kruskal–Wallis H-test and Principal Component Analysis. All composite fingerprints yielded a satisfactory GOF (> 0.97) and were subsequently used for numerical mass balance modelling with uncertainty analysis. The contributions of the individual sub-catchment spatial sediment sources varied from 6.4% (the headwater sub-catchment of Sugnugur Gol) to 36.2% (the Kharaa II sub-catchment in the middle reaches of the study basin), generally showing higher contributions from the sub-catchments in the middle, rather than the upstream, portions of the study area. The importance of river bank erosion is shown to increase from upstream to midstream tributaries. The source tracing procedure provides results in reasonable accordance with previous findings in the study region and demonstrates the applicability and associated uncertainties of the approach for fine-grained sediment source investigation in large scale semi-arid catchments. - Highlights: • Applied statistical approach for selecting composite fingerprints in Mongolia. • Geochemical fingerprinting for the definition of source areas in semiarid catchment. • Test of applicability of sediment sourcing in large scale semi-arid catchments

  4. Source identification of fine-grained suspended sediment in the Kharaa River basin, northern Mongolia

    International Nuclear Information System (INIS)

    Theuring, Philipp; Collins, Adrian L.; Rode, Michael

    2015-01-01

    Fine sediment inputs into river systems can be a major source of nutrients and heavy metals and have a strong impact on water quality and ecosystem functions of rivers and lakes, including those in semiarid regions. However, little is known to date about the spatial distribution of sediment sources in most large scale river basins in Central Asia. Accordingly, a sediment source fingerprinting technique was used to assess the spatial sources of fine-grained (< 10 μm) sediment in the 15 000 km 2 Kharaa River basin in northern Mongolia. Variation in geochemical composition (e.g. in Ti, Sn, Mo, Mn, As, Sr, B, U, Ca and Sb) was used for sediment source discrimination with geochemical composite fingerprints based on Genetic Algorithm (GA)-driven Discriminant Function Analysis, the Kruskal–Wallis H-test and Principal Component Analysis. All composite fingerprints yielded a satisfactory GOF (> 0.97) and were subsequently used for numerical mass balance modelling with uncertainty analysis. The contributions of the individual sub-catchment spatial sediment sources varied from 6.4% (the headwater sub-catchment of Sugnugur Gol) to 36.2% (the Kharaa II sub-catchment in the middle reaches of the study basin), generally showing higher contributions from the sub-catchments in the middle, rather than the upstream, portions of the study area. The importance of river bank erosion is shown to increase from upstream to midstream tributaries. The source tracing procedure provides results in reasonable accordance with previous findings in the study region and demonstrates the applicability and associated uncertainties of the approach for fine-grained sediment source investigation in large scale semi-arid catchments. - Highlights: • Applied statistical approach for selecting composite fingerprints in Mongolia. • Geochemical fingerprinting for the definition of source areas in semiarid catchment. • Test of applicability of sediment sourcing in large scale semi-arid catchments.

  5. Fine mapping of the Asian soybean rust resistance gene Rpp2 from soybean PI 230970.

    Science.gov (United States)

    Yu, Neil; Kim, Myungsik; King, Zachary R; Harris, Donna K; Buck, James W; Li, Zenglu; Diers, Brian W

    2015-03-01

    Asian soybean rust (ASR) resistance gene Rpp2 has been fine mapped into a 188.1 kb interval on Glyma.Wm82.a2, which contains a series of plant resistance ( R ) genes. Asian soybean rust (ASR), caused by the fungus Phakopsora pachyrihizi Syd. & P. Syd., is a serious disease in major soybean [Glycine max (L.) Merr.] production countries worldwide and causes yield losses up to 75 %. Defining the exact chromosomal position of ASR resistance genes is critical for improving the effectiveness of marker-assisted selection (MAS) for resistance and for cloning these genes. The objective of this study was to fine map the ASR resistance gene Rpp2 from the plant introduction (PI) 230970. Rpp2 was previously mapped within a 12.9-cM interval on soybean chromosome 16. The fine mapping was initiated by identifying recombination events in F2 and F3 plants using simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers that flank the gene. Seventeen recombinant plants were identified and then tested with additional genetic markers saturating the gene region to localize the positions of each recombination. The progeny of these selected plants were tested for resistance to ASR and with SSR markers resulting in the mapping of Rpp2 to a 188.1 kb interval on the Williams 82 reference genome (Glyma.Wm82.a2). Twelve genes including ten toll/interleukin-1 receptor (TIR)-nucleotide-binding site (NBS)-leucine-rich repeat (LRR) genes were predicted to exist in this interval on the Glyma.Wm82.a2.v1 gene model map. Eight of these ten genes were homologous to the Arabidopsis TIR-NBS-LRR gene AT5G17680.1. The identified SSR and SNP markers close to Rpp2 and the candidate gene information presented in this study will be significant resources for MAS and gene cloning research.

  6. Molecular genetics

    International Nuclear Information System (INIS)

    Kubitschek, H.E.

    1975-01-01

    Progress is reported on studies on the nature and action of lethal and mutagenic lesions in DNA and the mechanisms by which these are produced in bacteria by ionizing radiation or by decay of radioisotopes incorporated in DNA. Studies of radioisotope decay provide the advantages that the original lesion is localized in the genetic material and the immediate physical and chemical changes that occur at decay are known. Specific types of DNA damage were related to characteristic decay properties of several radioisotopes. Incorporated 125 I, for example, induces a double-stranded break in DNA with almost every decay, but causes remarkably little damage of any other kind to the DNA. (U.S.)

  7. Fine-Mapping of the 1p11.2 Breast Cancer Susceptibility Locus

    DEFF Research Database (Denmark)

    Horne, Hisani N; Chung, Charles C; Zhang, Han

    2016-01-01

    The Cancer Genetic Markers of Susceptibility genome-wide association study (GWAS) originally identified a single nucleotide polymorphism (SNP) rs11249433 at 1p11.2 associated with breast cancer risk. To fine-map this locus, we genotyped 92 SNPs in a 900kb region (120,505,799-121,481,132) flanking...... rs11249433 in 45,276 breast cancer cases and 48,998 controls of European, Asian and African ancestry from 50 studies in the Breast Cancer Association Consortium. Genotyping was done using iCOGS, a custom-built array. Due to the complicated nature of the region on chr1p11.2: 120......,300,000-120,505,798, that lies near the centromere and contains seven duplicated genomic segments, we restricted analyses to 429 SNPs excluding the duplicated regions (42 genotyped and 387 imputed). Per-allelic associations with breast cancer risk were estimated using logistic regression models adjusting for study and ancestry...

  8. Fine particle collecting method upon cutting incore structural material

    International Nuclear Information System (INIS)

    Noie, Akihiko; Karasawa, Hidetoshi

    1998-01-01

    Air bubbles generated upon cutting incore structural materials are passed through a lattice-like metal mesh to be divided finely, and then risen in pool water. The air bubbles are risen in a state where fine metal particles are contained in a carrier gas upon conducting a plasma cutting operation. The fine particles in the air bubbles are moved to the surface of the bubbles by the effect of diffusion, inertia and gravitational precipitation, and transferred to water and removed. Since the diameter of the air bubbles is decreased, the time for the transfer of the particles to the surface of the air bubbles can be shortened to increase the amount of particles transferred per time and improve the collecting efficiency. Since fine particles of radioactive metals generated upon cutting can be collected by dividing air bubbles finely, the ventilation system of an operation chamber can be simplified. In addition, cutting operation at a shallow water depth is enabled to thereby increase the degree of freedom for operations. (N.H.)

  9. Agglomeration of coal fines for premium fuel application

    International Nuclear Information System (INIS)

    Atalay, A.; Zaman, M.D.

    1992-01-01

    This paper reports on fine coal in liquid suspension, which can be agglomerated in a number of ways. One of the oldest procedures involves the addition of electrolyte to the suspension to cause a reduction in the zeta potential and allow colliding particles to agglomerate. A second method involves the use of polymeric flocculants to bridge between particles. Both of these technologies are being used in the wastewater treatment plants for removal of fine waste particles from contaminated water. A third method involves the addition of a second immiscible liquid preferentially to wet the particles and cause adhesion by capillary interfacial forces. While the bonding forces in the first two methods are small and result in rather weak and voluminous agglomerates, the third method is postulated to produce more dense and much stronger agglomerates. In the case of fine coals, the carbonaceous constituents can be agglomerated and recovered from the aqueous suspension with many different coagulants. Inorganic or ash-forming constituents are also agglomerated along with the fine coal particles. As the froth floatation, agglomeration using coal and colloidal dust to effect a separation. Froth floatation, however, becomes less effective where extremely fine particles of cal must be treated or if there is considerable clay-size particle present. In contrast, there appears to be virtually no lower limit on the particle size suitable for agglomeration uses

  10. Fine Mapping Major Histocompatibility Complex Associations in Psoriasis and Its Clinical Subtypes

    Science.gov (United States)

    Okada, Yukinori; Han, Buhm; Tsoi, Lam C.; Stuart, Philip E.; Ellinghaus, Eva; Tejasvi, Trilokraj; Chandran, Vinod; Pellett, Fawnda; Pollock, Remy; Bowcock, Anne M.; Krueger, Gerald G.; Weichenthal, Michael; Voorhees, John J.; Rahman, Proton; Gregersen, Peter K.; Franke, Andre; Nair, Rajan P.; Abecasis, Gonçalo R.; Gladman, Dafna D.; Elder, James T.; de Bakker, Paul I.W.; Raychaudhuri, Soumya

    2014-01-01

    Psoriasis vulgaris (PsV) risk is strongly associated with variation within the major histocompatibility complex (MHC) region, but its genetic architecture has yet to be fully elucidated. Here, we conducted a large-scale fine-mapping study of PsV risk in the MHC region in 9,247 PsV-affected individuals and 13,589 controls of European descent by imputing class I and II human leukocyte antigen (HLA) genes from SNP genotype data. In addition, we imputed sequence variants for MICA, an MHC HLA-like gene that has been associated with PsV, to evaluate association at that locus as well. We observed that HLA-C∗06:02 demonstrated the lowest p value for overall PsV risk (p = 1.7 × 10−364). Stepwise analysis revealed multiple HLA-C∗06:02-independent risk variants in both class I and class II HLA genes for PsV susceptibility (HLA-C∗12:03, HLA-B amino acid positions 67 and 9, HLA-A amino acid position 95, and HLA-DQα1 amino acid position 53; p psoriasis (PsC; n = 3,098). We found that risk heterogeneity between PsA and PsC might be driven by HLA-B amino acid position 45 (pomnibus = 2.2 × 10−11), indicating that different genetic factors underlie the overall risk of PsV and the risk of specific PsV subphenotypes. Our study illustrates the value of high-resolution HLA and MICA imputation for fine mapping causal variants in the MHC. PMID:25087609

  11. Discovery and Fine Mapping of Serum Protein Loci through Transethnic Meta-analysis

    Science.gov (United States)

    Franceschini, Nora; van Rooij, Frank J.A.; Prins, Bram P.; Feitosa, Mary F.; Karakas, Mahir; Eckfeldt, John H.; Folsom, Aaron R.; Kopp, Jeffrey; Vaez, Ahmad; Andrews, Jeanette S.; Baumert, Jens; Boraska, Vesna; Broer, Linda; Hayward, Caroline; Ngwa, Julius S.; Okada, Yukinori; Polasek, Ozren; Westra, Harm-Jan; Wang, Ying A.; Del Greco M., Fabiola; Glazer, Nicole L.; Kapur, Karen; Kema, Ido P.; Lopez, Lorna M.; Schillert, Arne; Smith, Albert V.; Winkler, Cheryl A.; Zgaga, Lina; Bandinelli, Stefania; Bergmann, Sven; Boban, Mladen; Bochud, Murielle; Chen, Y.D.; Davies, Gail; Dehghan, Abbas; Ding, Jingzhong; Doering, Angela; Durda, J. Peter; Ferrucci, Luigi; Franco, Oscar H.; Franke, Lude; Gunjaca, Grog; Hofman, Albert; Hsu, Fang-Chi; Kolcic, Ivana; Kraja, Aldi; Kubo, Michiaki; Lackner, Karl J.; Launer, Lenore; Loehr, Laura R.; Li, Guo; Meisinger, Christa; Nakamura, Yusuke; Schwienbacher, Christine; Starr, John M.; Takahashi, Atsushi; Torlak, Vesela; Uitterlinden, André G.; Vitart, Veronique; Waldenberger, Melanie; Wild, Philipp S.; Kirin, Mirna; Zeller, Tanja; Zemunik, Tatijana; Zhang, Qunyuan; Ziegler, Andreas; Blankenberg, Stefan; Boerwinkle, Eric; Borecki, Ingrid B.; Campbell, Harry; Deary, Ian J.; Frayling, Timothy M.; Gieger, Christian; Harris, Tamara B.; Hicks, Andrew A.; Koenig, Wolfgang; O’Donnell, Christopher J.; Fox, Caroline S.; Pramstaller, Peter P.; Psaty, Bruce M.; Reiner, Alex P.; Rotter, Jerome I.; Rudan, Igor; Snieder, Harold; Tanaka, Toshihiro; van Duijn, Cornelia M.; Vollenweider, Peter; Waeber, Gerard; Wilson, James F.; Witteman, Jacqueline C.M.; Wolffenbuttel, Bruce H.R.; Wright, Alan F.; Wu, Qingyu; Liu, Yongmei; Jenny, Nancy S.; North, Kari E.; Felix, Janine F.; Alizadeh, Behrooz Z.; Cupples, L. Adrienne; Perry, John R.B.; Morris, Andrew P.

    2012-01-01

    Many disorders are associated with altered serum protein concentrations, including malnutrition, cancer, and cardiovascular, kidney, and inflammatory diseases. Although these protein concentrations are highly heritable, relatively little is known about their underlying genetic determinants. Through transethnic meta-analysis of European-ancestry and Japanese genome-wide association studies, we identified six loci at genome-wide significance (p < 5 × 10−8) for serum albumin (HPN-SCN1B, GCKR-FNDC4, SERPINF2-WDR81, TNFRSF11A-ZCCHC2, FRMD5-WDR76, and RPS11-FCGRT, in up to 53,190 European-ancestry and 9,380 Japanese individuals) and three loci for total protein (TNFRS13B, 6q21.3, and ELL2, in up to 25,539 European-ancestry and 10,168 Japanese individuals). We observed little evidence of heterogeneity in allelic effects at these loci between groups of European and Japanese ancestry but obtained substantial improvements in the resolution of fine mapping of potential causal variants by leveraging transethnic differences in the distribution of linkage disequilibrium. We demonstrated a functional role for the most strongly associated serum albumin locus, HPN, for which Hpn knockout mice manifest low plasma albumin concentrations. Other loci associated with serum albumin harbor genes related to ribosome function, protein translation, and proteasomal degradation, whereas those associated with serum total protein include genes related to immune function. Our results highlight the advantages of transethnic meta-analysis for the discovery and fine mapping of complex trait loci and have provided initial insights into the underlying genetic architecture of serum protein concentrations and their association with human disease. PMID:23022100

  12. New algorithm improves fine structure of the barley consensus SNP map

    Directory of Open Access Journals (Sweden)

    Endelman Jeffrey B

    2011-08-01

    Full Text Available Abstract Background The need to integrate information from multiple linkage maps is a long-standing problem in genetics. One way to visualize the complex ordinal relationships is with a directed graph, where each vertex in the graph is a bin of markers. When there are no ordering conflicts between the linkage maps, the result is a directed acyclic graph, or DAG, which can then be linearized to produce a consensus map. Results New algorithms for the simplification and linearization of consensus graphs have been implemented as a package for the R computing environment called DAGGER. The simplified consensus graphs produced by DAGGER exactly capture the ordinal relationships present in a series of linkage maps. Using either linear or quadratic programming, DAGGER generates a consensus map with minimum error relative to the linkage maps while remaining ordinally consistent with them. Both linearization methods produce consensus maps that are compressed relative to the mean of the linkage maps. After rescaling, however, the consensus maps had higher accuracy (and higher marker density than the individual linkage maps in genetic simulations. When applied to four barley linkage maps genotyped at nearly 3000 SNP markers, DAGGER produced a consensus map with improved fine structure compared to the existing barley consensus SNP map. The root-mean-squared error between the linkage maps and the DAGGER map was 0.82 cM per marker interval compared to 2.28 cM for the existing consensus map. Examination of the barley hardness locus at the 5HS telomere, for which there is a physical map, confirmed that the DAGGER output was more accurate for fine structure analysis. Conclusions The R package DAGGER is an effective, freely available resource for integrating the information from a set of consistent linkage maps.

  13. Fine mapping major histocompatibility complex associations in psoriasis and its clinical subtypes.

    Science.gov (United States)

    Okada, Yukinori; Han, Buhm; Tsoi, Lam C; Stuart, Philip E; Ellinghaus, Eva; Tejasvi, Trilokraj; Chandran, Vinod; Pellett, Fawnda; Pollock, Remy; Bowcock, Anne M; Krueger, Gerald G; Weichenthal, Michael; Voorhees, John J; Rahman, Proton; Gregersen, Peter K; Franke, Andre; Nair, Rajan P; Abecasis, Gonçalo R; Gladman, Dafna D; Elder, James T; de Bakker, Paul I W; Raychaudhuri, Soumya

    2014-08-07

    Psoriasis vulgaris (PsV) risk is strongly associated with variation within the major histocompatibility complex (MHC) region, but its genetic architecture has yet to be fully elucidated. Here, we conducted a large-scale fine-mapping study of PsV risk in the MHC region in 9,247 PsV-affected individuals and 13,589 controls of European descent by imputing class I and II human leukocyte antigen (HLA) genes from SNP genotype data. In addition, we imputed sequence variants for MICA, an MHC HLA-like gene that has been associated with PsV, to evaluate association at that locus as well. We observed that HLA-C(∗)06:02 demonstrated the lowest p value for overall PsV risk (p = 1.7 × 10(-364)). Stepwise analysis revealed multiple HLA-C(∗)06:02-independent risk variants in both class I and class II HLA genes for PsV susceptibility (HLA-C(∗)12:03, HLA-B amino acid positions 67 and 9, HLA-A amino acid position 95, and HLA-DQα1 amino acid position 53; p major clinical subtypes of PsV, psoriatic arthritis (PsA; n = 3,038) and cutaneous psoriasis (PsC; n = 3,098). We found that risk heterogeneity between PsA and PsC might be driven by HLA-B amino acid position 45 (Pomnibus = 2.2 × 10(-11)), indicating that different genetic factors underlie the overall risk of PsV and the risk of specific PsV subphenotypes. Our study illustrates the value of high-resolution HLA and MICA imputation for fine mapping causal variants in the MHC. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

  14. Recycling of PET bottles as fine aggregate in concrete.

    Science.gov (United States)

    Frigione, Mariaenrica

    2010-06-01

    An attempt to substitute in concrete the 5% by weight of fine aggregate (natural sand) with an equal weight of PET aggregates manufactured from the waste un-washed PET bottles (WPET), is presented. The WPET particles possessed a granulometry similar to that of the substituted sand. Specimens with different cement content and water/cement ratio were manufactured. Rheological characterization on fresh concrete and mechanical tests at the ages of 28 and 365days were performed on the WPET/concretes as well as on reference concretes containing only natural fine aggregate in order to investigate the influence of the substitution of WPET to the fine aggregate in concrete. It was found that the WPET concretes display similar workability characteristics, compressive strength and splitting tensile strength slightly lower that the reference concrete and a moderately higher ductility. Copyright 2010 Elsevier Ltd. All rights reserved.

  15. Properties of Industrial Slag as Fine Aggregate in Concrete

    Directory of Open Access Journals (Sweden)

    A. Ananthi

    2015-04-01

    Full Text Available The main objective of this paper is to use the industrial waste such as bottom ash and Weld Slag (WS as the partial replacement for fine aggregates in concrete. This paper presents the chemical analysis and strength properties of industrial solid waste such as bottom ash, weld slag 1 (WS 1 and weld slag 2 (WS 2. Their chemical compositions were identified by X-ray powder diffraction (XRD analysis. The qualitative and quantitative elemental analysis of the bottom ash and weld slag was recognized by energy dispersive X-ray analysis and their morphology were studied by Scanning Electron Microscope (SEM. The compressive strength of concrete with 10% replacement of fine aggregate to the industrial waste shows higher strength than the normal concrete and hence this industrial waste can be used as fine aggregate in concrete.

  16. Function spaces with uniform, fine and graph topologies

    CERN Document Server

    McCoy, Robert A; Jindal, Varun

    2018-01-01

    This book presents a comprehensive account of the theory of spaces of continuous functions under uniform, fine and graph topologies. Besides giving full details of known results, an attempt is made to give generalizations wherever possible, enriching the existing literature. The goal of this monograph is to provide an extensive study of the uniform, fine and graph topologies on the space C(X,Y) of all continuous functions from a Tychonoff space X to a metric space (Y,d); and the uniform and fine topologies on the space H(X) of all self-homeomorphisms on a metric space (X,d). The subject matter of this monograph is significant from the theoretical viewpoint, but also has applications in areas such as analysis, approximation theory and differential topology. Written in an accessible style, this book will be of interest to researchers as well as graduate students in this vibrant research area.

  17. Superior Properties of Ultra-fine-grained Steels

    Directory of Open Access Journals (Sweden)

    J. I. Leinonen

    2004-01-01

    Full Text Available A description of the improved mechanical properties obtained in ultra-fine-grained steels up to now will be presented in this paper, and some potential applications of these new generation steels will be described. In addition, the principle and implementation of a novel hot rolling process developed by the author will be introduced. This novel Thermomechanical Nonrecrystallisation Control Process (TNCP has been shown to give an ultra-fine ferrite (uff structure with grain sizes of 2 to 3mm in various test steels, thus resulting in super-toughness. Charpy V impact test results suggest that some of these steels could still be tough at temperatures lower than -100 °C. This novel process, TNCP, is one potential candidate for the commercial production of superior ultra-fine-grained steels in the future.

  18. Research on rheological properties of micro-fine grouting cement

    Energy Technology Data Exchange (ETDEWEB)

    Guan, X.; Wang, Y.; Yang, L. [Jiaozuo Institute of Technology, Jiaozuo (China). Dept. of Resource and Material Engineering

    2003-06-01

    This article studies the influence of the fineness of cement, fly ash (FA), its composite admixture and the amount and method by which they are mixed with superplasticizer on the rheological properties of micro-fine cement. By means of modern instruments and technologies (such as XRDF, SEM, laser granulometer and superficial-potential apparatus etc.), the article studies the mineral compositions, the appearance character of the grains, particle size distribution and superficial potential of FA and its composite materials. The reducing mechanism of FA is thoroughly analysed. The study shows that FA and its composite admixture are excellent components which can effectively improve the rheological properties of micro-fine cement, and that the superplasticizer has a saturation point and the mixing method has a great influence on the rheological properties. 8 refs., 7 figs., 6 tabs.

  19. Beyond Fine Tuning: Adding capacity to leverage few labels

    Energy Technology Data Exchange (ETDEWEB)

    Hodas, Nathan O.; Shaffer, Kyle J.; Yankov, Artem; Corley, Courtney D.; Anderson, Aryk L.

    2017-12-09

    In this paper we present a technique to train neural network models on small amounts of data. Current methods for training neural networks on small amounts of rich data typically rely on strategies such as fine-tuning a pre-trained neural networks or the use of domain-specific hand-engineered features. Here we take the approach of treating network layers, or entire networks, as modules and combine pre-trained modules with untrained modules, to learn the shift in distributions between data sets. The central impact of using a modular approach comes from adding new representations to a network, as opposed to replacing representations via fine-tuning. Using this technique, we are able surpass results using standard fine-tuning transfer learning approaches, and we are also able to significantly increase performance over such approaches when using smaller amounts of data.

  20. Exploratory analysis of fines for water pollution in Bangladesh

    Directory of Open Access Journals (Sweden)

    Nabil Haque

    2017-12-01

    Full Text Available As a consequence of rapid industrialization, the waterbodies of Bangladesh have transformed into seasonal dead zones from the ensuing pollution. Despite having environmental regulations to control industrial pollution, lack of effective enforcement has jeopardized environmental quality. Evaluation of enforcement mechanisms have not gained attention from researchers until recently. This qualitative and descriptive analysis illustrates the current enforcement regime for environmental compliance in Bangladesh focusing on fines levied on polluters. Although there are no official guidelines for fines based on type of violation, this paper identified that there are differences of fines among violation based on historical data. It was also found that textile factories are not penalized heavily compared to non-textile factories. Repeat offenders were found to be penalized at the same rate. This study can be used to design appropriate penalty structure based on violation types, and reform the enforcement system so that polluters pay principle is actually implemented.

  1. Recycling of PET bottles as fine aggregate in concrete

    International Nuclear Information System (INIS)

    Frigione, Mariaenrica

    2010-01-01

    An attempt to substitute in concrete the 5% by weight of fine aggregate (natural sand) with an equal weight of PET aggregates manufactured from the waste un-washed PET bottles (WPET), is presented. The WPET particles possessed a granulometry similar to that of the substituted sand. Specimens with different cement content and water/cement ratio were manufactured. Rheological characterization on fresh concrete and mechanical tests at the ages of 28 and 365 days were performed on the WPET/concretes as well as on reference concretes containing only natural fine aggregate in order to investigate the influence of the substitution of WPET to the fine aggregate in concrete. It was found that the WPET concretes display similar workability characteristics, compressive strength and splitting tensile strength slightly lower that the reference concrete and a moderately higher ductility.

  2. Fine Tuning Mission to reach those influenced by Darwinism

    Directory of Open Access Journals (Sweden)

    Roger Tucker

    2014-01-01

    Full Text Available The scientifically aware section of the South African population is increasing. Many are being exposed to the concept of Darwinian evolution. Exposure has generated a religious sub �people group� who have problems with Christianity because they have been influenced by the naturalistic element in Darwinian philosophy. Christian antagonism towards evolution has often prejudiced them unfavourably towards the gospel. Recent discoveries concerning the fine-tuning of the universe have now presented a window of opportunity for overcoming this. It may enable the church to �fine-tune� its missionary approach to present them with the gospel in a more acceptable manner. It is suggested that Paul�s Areopagus speech provides a model for such cross-cultural evangelism. A section is included at the end, describing some objections that have been raised against the cosmological fine-tuning apologetic.

  3. Development of High Sensitivity Nuclear Emulsion and Fine Grained Emulsion

    Science.gov (United States)

    Kawahara, H.; Asada, T.; Naka, T.; Naganawa, N.; Kuwabara, K.; Nakamura, M.

    2014-08-01

    Nuclear emulsion is a particle detector having high spacial resolution and angular resolution. It became useful for large statistics experiment thanks to the development of automatic scanning system. In 2010, a facility for emulsion production was introduced and R&D of nuclear emulsion began at Nagoya university. In this paper, we present results of development of the high sensitivity emulsion and fine grained emulsion for dark matter search experiment. Improvement of sensitivity is achieved by raising density of silver halide crystals and doping well-adjusted amount of chemicals. Production of fine grained emulsion was difficult because of unexpected crystal condensation. By mixing polyvinyl alcohol (PVA) to gelatin as a binder, we succeeded in making a stable fine grained emulsion.

  4. Development of High Sensitivity Nuclear Emulsion and Fine Grained Emulsion

    Energy Technology Data Exchange (ETDEWEB)

    Kawahara, H.; Asada, T. [Department of Physics, Nagoya University, Nagoya 464-8602 (Japan); Naka, T. [Institute of Advanced Research, Nagoya University (Japan); Naganawa, N.; Kuwabara, K.; Nakamura, M. [Department of Physics, Nagoya University, Nagoya 464-8602 (Japan)

    2014-08-15

    Nuclear emulsion is a particle detector having high spacial resolution and angular resolution. It became useful for large statistics experiment thanks to the development of automatic scanning system. In 2010, a facility for emulsion production was introduced and R and D of nuclear emulsion began at Nagoya university. In this paper, we present results of development of the high sensitivity emulsion and fine grained emulsion for dark matter search experiment. Improvement of sensitivity is achieved by raising density of silver halide crystals and doping well-adjusted amount of chemicals. Production of fine grained emulsion was difficult because of unexpected crystal condensation. By mixing polyvinyl alcohol (PVA) to gelatin as a binder, we succeeded in making a stable fine grained emulsion.

  5. Is IRAS cirrus cloud emission largely fine-structure radiation

    International Nuclear Information System (INIS)

    Harwit, M.; Houck, J.R.; Stacey, G.J.

    1986-01-01

    One of the more interesting observations made by the infrared astronomical satellite (IRAS) mission is the discovery of a diffuse 'cirrus' component seen at 60 and 100μm. It straddles the galactic plane and extends, in patches, to latitudes of +-80 0 . Comparison of the observed brightness from these clouds with [0 I] 63-μm and [O III] 88-μm fine-structure line emission, calculated on the basis of observed [C II] emission from the galactic plane, shows the flux levels observed by IRAS to be of the same order as the expected fine-structure line emission. The authors propose that fine-structure line emission, from neutral gas at 63 μm and from diffuse ionized clouds at 88μm, is a significant component and some clouds perhaps the prime source of the cirrus radiation. (author)

  6. Genetics and Rheumatic Disease

    Science.gov (United States)

    ... Well with Rheumatic Disease Genetics and Rheumatic Disease Genetics and Rheumatic Disease Fast Facts Studying twins has ... 70%, and for non-identical pairs, even lower. Genetics and ankylosing spondylitis Each rheumatic disease has its ...

  7. Spectral fine structure effects on material and doppler reactivity worth

    International Nuclear Information System (INIS)

    Greenspan, E.; Karni, Y.

    1975-01-01

    New formulations concerning the fine structure effects on the reactivity worth of resonances are developed and conclusions are derived following the extension to more general types of perturbations which include: the removal of resonance material at finite temperatures and the temperature variation of part of the resonance material. It is concluded that the flux method can overpredict the reactivity worth of resonance materials more than anticipated. Calculations on the Doppler worth were carried out; the results can be useful for asessing the contribution of the fine structure effects to the large discrepancy that exists between the calculated and measured small sample Doppler worths. (B.G.)

  8. Le strutture ecclesiastiche a Firenze a fine Settecento

    Directory of Open Access Journals (Sweden)

    Pietro Domenico Giovannoni

    2014-04-01

    Full Text Available Il saggio ricostruisce il quadro generale delle strutture ecclesiastiche della città di Firenze alla fine del XVIII secolo: la rete parrocchiale, il ruolo del Capitolo del Duomo e quello della Basilica di San Lorenzo, la presenza di monasteri e conventi di regolari maschili e femminili ed infine le numerose compagnie laicali. Dall’analisi emerge come ancora a fine Settecento le istituzioni ecclesiastiche cittadine fossero fortemente legate alla struttura sociale della città, agli interessi ed alle strategie economiche e di prestigio sociale messe in opera dai diversi ceti, dalla aristocazia ai ceti produttivi degli artigiani.

  9. Dynamic classifiers: a fine way to help achieve lower emissions

    Energy Technology Data Exchange (ETDEWEB)

    Landers, A.; Dugdale, K.L.; Leppak, T. [Powergen, Ratcliffe-on-Soar (United Kingdom)

    2004-04-01

    There have been very few conversions of UK coal mills from static to dynamic classifiers. But test experience with a dynamic classifier at Powergen's Ratcliffe-on-Soar power station has demonstrated significant fineness gain, especially at the coarse end of the particle size distribution curve, and minimal effect on mill coal throughput and operability, with greatly reduced in vibration levels. All mills at unit 1 are to be converted. The increased fineness will help offset the lower combustion efficiency to be expected when a boosted overfire air system is fitted to the plant to reduce NOx. 4 figs., 4 tabs.

  10. A hazard to health? Fine particles arouse worldwide interest

    Energy Technology Data Exchange (ETDEWEB)

    Karas, J.; Oesch, P.

    1998-07-01

    The most recent studies show that particles contained in the air that we breathe may have harmful effects on the health of asthmatics, children and old people in particular. Particle material found in ambient air is formed by emissions resulting from traffic, industry and other use of fuels. Nature`s own sources also have a significant effect on particle concentrations. The mechanisms by which fine particles may produce negative health effects are so far unknown. At present it is therefore impossible to assess the effects of emissions of fine particles resulting, for instance, from the use of fossil fuels

  11. Fine-art gifted pupils in art classes

    OpenAIRE

    Vogrin, Oto

    2011-01-01

    Fine arts gift is an inborn quality yet the potential can easily be wasted if not developed. The development of a child’s gift is affected by his/her surroundings and conditions, adapted to an individual’s needs. Among the individual capabilities of fine arts gifted student our special attention goes to the ones which an individual uses to assimilate his/her experience and reactions to it, to visual memory, manual skills and aesthetic intelligence. They all enable us to determine aesthetic va...

  12. Fine structure of fields in 2D photonic crystal waveguides

    DEFF Research Database (Denmark)

    Lavrinenko, Andrei; Volkov, V. S.; Bozhevolnyi, S. I.

    2006-01-01

    We resolve fine structure of fields in a single-row missing photonic crystal waveguide by finite-difference time-domain modelling and SNOM measurements. Both linear dispersion and slow-light regimes in proximity of the cutoff are addressed in the analysis.......We resolve fine structure of fields in a single-row missing photonic crystal waveguide by finite-difference time-domain modelling and SNOM measurements. Both linear dispersion and slow-light regimes in proximity of the cutoff are addressed in the analysis....

  13. On the MSSM Higgsino mass and fine tuning

    CERN Document Server

    Ross, Graham G.

    2016-08-10

    It is often argued that low fine tuning in the MSSM necessarily requires a rather light Higgsino. In this note we show that this need not be the case when a more complete set of soft SUSY breaking mass terms are included. In particular an Higgsino mass term, that correlates the $\\mu-$term contribution with the soft SUSY-breaking Higgsino masses, significantly reduces the fine tuning even for Higgsinos in the TeV mass range where its relic abundance means it can make up all the dark matter.

  14. The genetic architecture of leaf number and its genetic relationship to flowering time in maize.

    Science.gov (United States)

    Li, Dan; Wang, Xufeng; Zhang, Xiangbo; Chen, Qiuyue; Xu, Guanghui; Xu, Dingyi; Wang, Chenglong; Liang, Yameng; Wu, Lishuan; Huang, Cheng; Tian, Jinge; Wu, Yaoyao; Tian, Feng

    2016-04-01

    The number of leaves and their distributions on plants are critical factors determining plant architecture in maize (Zea mays), and leaf number is frequently used as a measure of flowering time, a trait that is key to local environmental adaptation. Here, using a large set of 866 maize-teosinte BC2 S3 recombinant inbred lines genotyped by using 19,838 single nucleotide polymorphism markers, we conducted a comprehensive genetic dissection to assess the genetic architecture of leaf number and its genetic relationship to flowering time. We demonstrated that the two components of total leaf number, the number of leaves above (LA) and below (LB) the primary ear, were under relatively independent genetic control and might be subject to differential directional selection during maize domestication and improvement. Furthermore, we revealed that flowering time and leaf number are commonly regulated at a moderate level. The pleiotropy of the genes ZCN8, dlf1 and ZmCCT on leaf number and flowering time were validated by near-isogenic line analysis. Through fine mapping, qLA1-1, a major-effect locus that specifically affects LA, was delimited to a region with severe recombination suppression derived from teosinte. This study provides important insights into the genetic basis of traits affecting plant architecture and adaptation. The genetic independence of LA from LB enables the optimization of leaf number for ideal plant architecture breeding in maize. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

  15. Magnetic properties of lanthanum orthoferrite fine powders prepared ...

    Indian Academy of Sciences (India)

    Unknown

    Abstract. Fine powders of lanthanum iron oxide, LaFeO3, have been prepared by solid state reaction as well as sol–gel synthesis and nebulized spray pyrolysis. Struc- tures, morphologies and magnetic susceptibility measurements of these powders have been examined. The powders prepared by all the three ...

  16. Hydrological modelling of fine sediments in the Odzi River, Zimbabwe

    African Journals Online (AJOL)

    The required length of data for calibration purposes was evaluated and model validation through split sample and proxy basin comparison was performed. Furthermore, since the empirical model was dependent on monitored runoff and fine sediment concentrations for calibration purposes, a field measurement campaign ...

  17. Fine 5 sõidab ühelt festivalilt teisele

    Index Scriptorium Estoniae

    2004-01-01

    Tantsuteatri Fine 5 lavastus "Püha kevad" on kutsutud kolmele rahvusvahelisele festivalile. Läinud nädalal osaleti Riias Balti balletifestivalil, täna astutakse üles Kaliningradis festivalil "Tants-transiit" ja juuni algul sõidetakse Moskvasse vene teatri festivalile

  18. Facilitating Fine Grained Data Provenance using Temporal Data Model

    NARCIS (Netherlands)

    Huq, M.R.; Wombacher, Andreas; Apers, Peter M.G.

    2010-01-01

    E-science applications use fine grained data provenance to maintain the reproducibility of scientific results, i.e., for each processed data tuple, the source data used to process the tuple as well as the used approach is documented. Since most of the e-science applications perform on-line

  19. Autonomous patterning of cells on microstructured fine particles

    International Nuclear Information System (INIS)

    Takeda, Iwori; Kawanabe, Masato; Kaneko, Arata

    2015-01-01

    Regularly patterned cells can clarify cellular function and are required in some biochip applications. This study examines cell patterning along microstructures and the effect of microstructural geometry on selective cellular adhesion. Particles can be autonomously assembled on a soda-lime glass substrate that is chemically patterned by immersion in a suspension of fine particles. By adopting various sizes of fine particles, we can control the geometry of the microstructure. Cells adhere more readily to microstructured fine particles than to flat glass substrate. Silica particles hexagonally packed in 5–40 μm line and space microstructures provide an effective cell scaffold on the glass substrate. Cultured cells tend to attach and proliferate along the microstructured region while avoiding the flat region. The difference in cell adhesion is attributed to their geometries, as both of the silica particles and soda-lime glass are hydrophilic related with cell adhesiveness. After cell seeding, cells adhered to the flat region migrated toward the microstructured region. For most of the cells to assemble on the scaffold, the scaffolding microstructures must be spaced by at most 65 μm. - Highlights: • PS and SiO 2 particles provide effective scaffolds for cells. • Cells that adhere to microstructured particles successfully proliferate and differentiate. • Selective adhesion and growth along the scaffold can be achieved by patterning the fine particle microstructure. • Cells adhered to flat regions migrate toward microstructured regions. • Selective adhesion by cells depends on the microstructural geometry; specifically, on the inter-line spacing

  20. Thymidine kinase 1 regulatory fine-tuning through tetramer formation

    DEFF Research Database (Denmark)

    Mutahir, Zeeshan; Clausen, Anders R.; Andersson, Karl-Magnus

    2013-01-01

    concentration-dependent transition of TK1 from a dimer with low catalytic efficiency to a tetramer with high catalytic efficiency. This regulatory fine-tuning serves as an additional control to provide a balanced pool of nucleic acid precursors in the cell. We subcloned and over-expressed 10 different TK1s...

  1. Diagnostic accuracy of fine needle aspiration cytology in patients ...

    African Journals Online (AJOL)

    thyroid carcinoma being the most predominant type and colloid goiter was the most predominant benign thyroid disease. The sensitivity was 61.5% and specificity 89.5% . Conclusion: This study revealed high specificity and low sensitivity of Fine Needle Aspiration Cytology (FNAC) at detecting malignancy in thyroid nodules.

  2. Children's Talent in Fine Art and Music--England.

    Science.gov (United States)

    Freeman, Joan

    2000-01-01

    A British study that compared 12 musically gifted children (ages 8- 11) and 12 children gifted in fine arts with controls, found environmental circumstances, especially at home, were of vital importance for exceptionally high-level performance, even when there was provision at schools for developing talent. (Contains references.) (Author/CR)

  3. Late Quaternary fine silt deposits of Jammu, NW Himalaya: Genesis ...

    Indian Academy of Sciences (India)

    The deposits termed as 'Potwar loessic silt' comprising sandy silt are essentially of late Quaternary age (75–18 ka) and are re-looked herein from the point of view of genesis and climatic significance. The sorting, skewness and kurtosis parameters of fine silts of Jammu suggest fluvial environment of the deposits wherein the ...

  4. Fine particle deposition at Vainguinim tourist beach, Goa, India

    Digital Repository Service at National Institute of Oceanography (India)

    Chandramohan, P.; Jayakumar, S.; SanilKumar, V.; Ilangovan, D

    . The beach sediments consist primarily shell fragments and quartz, with heavy mineral composed of ilmenits, magnetite and manganese. The black stain of the fine-grained heavy minerals deposited on the beach face reduces the aesthetics of the beach. This paper...

  5. Fining of Red Wine Monitored by Multiple Light Scattering.

    Science.gov (United States)

    Ferrentino, Giovanna; Ramezani, Mohsen; Morozova, Ksenia; Hafner, Daniela; Pedri, Ulrich; Pixner, Konrad; Scampicchio, Matteo

    2017-07-12

    This work describes a new approach based on multiple light scattering to study red wine clarification processes. The whole spectral signal (1933 backscattering points along the length of each sample vial) were fitted by a multivariate kinetic model that was built with a three-step mechanism, implying (1) adsorption of wine colloids to fining agents, (2) aggregation into larger particles, and (3) sedimentation. Each step is characterized by a reaction rate constant. According to the first reaction, the results showed that gelatin was the most efficient fining agent, concerning the main objective, which was the clarification of the wine, and consequently the increase in its limpidity. Such a trend was also discussed in relation to the results achieved by nephelometry, total phenols, ζ-potential, color, sensory, and electronic nose analyses. Also, higher concentrations of the fining agent (from 5 to 30 g/100 L) or higher temperatures (from 10 to 20 °C) sped up the process. Finally, the advantage of using the whole spectral signal vs classical univariate approaches was demonstrated by comparing the uncertainty associated with the rate constants of the proposed kinetic model. Overall, multiple light scattering technique showed a great potential for studying fining processes compared to classical univariate approaches.

  6. Fine Needle Aspiration: A simple and convenient alternative for ...

    African Journals Online (AJOL)

    Nine patients followed up to hospital for other medical problems unrelated to ganglion cysts and only one patient had to undergo surgical excision due to the large size of the cyst. No patient returned with a recurrence. Conclusion: Fine needle aspiration is a simple, non traumatic, inexpensive and low risk alternative method ...

  7. Deposition of a fine powder in horizontal pipelines and bends

    NARCIS (Netherlands)

    Reuvekamp, RJ; Ray, MB; Hoffmann, AC

    The deposition of a very fine powder in a horizontal, lean-phase pneumatic conveying conduit containing a 90degrees bend has been studied experimentally. The total deposition and the deposition pattern were studied as a function of superficial gas velocity, solids loading and bend geometry: one

  8. Use of Unprocessed Coal Bottom Ash as Partial Fine Aggregate ...

    African Journals Online (AJOL)

    The research also shows that 20% is the optimum percentage replacement to achieve favorable strength and good strength development pattern as a normal concrete mix with time. Unprocessed bottom ash from FUEL power station can thus be used as fine aggregate replacement in concrete for that specific percentage ...

  9. Fine Needle Aspiration Cytology In Tumour Diagnosis | Obaseki ...

    African Journals Online (AJOL)

    Fine needle aspiration cytology (FNAC), a technique for obtaining cellular material for cytological examination and diagnosis using a 21- gauge or smaller needle, is performed using a 5, 10, or 20ml syringe either freehand or using special syringe holders. It allows a minimally invasive, rapid diagnosis of tissue samples but

  10. Diagnosis Of Thyroid Enlargement: Use Of Fine Needle Aspiration ...

    African Journals Online (AJOL)

    One hundred and ten Fine Needle Aspiration Biopsies (FNAC) obtained from 87 patients with thyroid enlargement or nodules were retrospectively reviewed. Aspiration biopsy was accomplished using 21-gauge needle attached with 20-ml plastic syringe. There were 14 males and 73 females involved in the study. Sixty- four ...

  11. Fine and coarse components in surface sediments from Bikini Lagoon

    Energy Technology Data Exchange (ETDEWEB)

    Noshkin, V. E., LLNL

    1997-01-01

    In 1979, 21 years after the moratorium on nuclear testing in the Marshall Islands, surface sediment samples (to depths of 2 and 4 cm) were collected from 87 locations in the lagoon of Bikini Atoll, one of the two sites in the Marshall Islands used by the United States to test nuclear devices from 1946 through 1958. The main purpose for the collections was to map the distribution of long-lived man-made radionuclides associated with the bottom material. In addition the samples were processed to estimate the fraction of fine and coarse components to show, by comparison, what modifications occurred in the composition since the sediments were first described in samples collected before testing in 1946. Nuclear testing produced more finely divided material that is now found in the surface sediment layer over large areas of the lagoon and especially in regions of the lagoon and reef adjacent to test sites. The 5 cratering events alone at Bikini Atoll redistributed sufficient material to account for the higher inventory of fine material found over the surface 4 cm of the sediment of the lagoon. Although the fraction of fine material in the bottom sediments was altered by the nuclear events, the combined processes of formation, transport and deposition were not sufficiently dynamic to greatly change the general geographical features of the major sedimentary components over most of the lagoon floor.

  12. The Heck reaction in the production of fine chemicals

    NARCIS (Netherlands)

    Vries, Johannes G. de

    2001-01-01

    An overview is given of the use of the Heck reaction for the production of fine chemicals. Five commercial products have been identified that are produced on a scale in excess of 1 ton/year. The herbicide Prosulfuron™ is produced via a Matsuda reaction of 2-sulfonatobenzenediazonium on

  13. Envisioning the Future: Working toward Sustainability in Fine Art Education

    Science.gov (United States)

    Clarke, Angela; Hulbert, Shane

    2016-01-01

    Fine art education provides students with opportunities to acquire knowledge and skills to respond creatively to their experience of society and culture. Fostering creative ways of knowing, thinking and doing requires studio learning conditions that promote the exploration of embodied perceptions, material sensibilities and conceptual ideas that…

  14. Creative and Aesthetic Responses to Picturebooks and Fine Art

    Science.gov (United States)

    Evans, Janet

    2009-01-01

    It has long been accepted that one can respond to fine art in a variety of different ways. However, it is only in the last decade or so that picturebooks have been attracting the kind of recognition that they have long deserved as art forms to be considered and responded to both creatively and aesthetically. There is a growing body of research…

  15. Revisioning Premodern Fine Art as Popular Visual Culture

    Science.gov (United States)

    Duncum, Paul

    2014-01-01

    Employing the concept of a rhetoric of emotions, European Premodern fine art is revisioned as popular culture. From ancient times, the rhetoric of emotion was one of the principle concepts informing the theory and practice of all forms of European cultural production, including the visual arts, until it was gradually displaced during the 1700s and…

  16. The Appropriation of Fine Art into Contemporary Narrative Picturebooks

    Science.gov (United States)

    Serafini, Frank

    2015-01-01

    Many picturebook artists have been formally trained in specific artistic styles, movements, and techniques. These artists appropriate and transform works of fine art to varying degrees to fit the themes and designs of the stories they illustrate and publish, and to increase the significance and impact of their illustrations. The…

  17. Fine Needle Aspiration Cytology [FNAC] Technique As A Diagnostic ...

    African Journals Online (AJOL)

    Background: The Fine needle aspiration technique is frequently done in the University of Maiduguri Teaching Hospital for swellings from any anatomical site of the body. Objective: This paper is aimed at highlighting the importance of the technique in the diagnosis of tumours in any health care institution. Methods: A ...

  18. Diagnostic accuracy of fine needle aspiration cytology in patients ...

    African Journals Online (AJOL)

    Background: Thyroid disease affects about 5% of the World's population. Fine Needle Aspiration Cytology (FNAC) helps in planning extent of surgery. In some studies, FNAC has been found to have a low accuracy for malignancy. Objective: To estimate the sensitivity and specificity of FNAC in detecting malignancy for ...

  19. Fine needle aspiration cytology of breast lumps with histopathologic ...

    African Journals Online (AJOL)

    Objective: To determine the histopathologic correlation of fine needle aspiration cytology FNAC of breast masses seen in the department of histopathology of the Federal Medical Center Owo, Southwestern Nigeria. Design: This is a 5-year retrospective study of breast lumps seen at Department of Histopathology, Federal ...

  20. Comparing Aspiration and Non-aspiration Fine Needle Techniques ...

    African Journals Online (AJOL)

    Background: Nodular goitre remains a problem of enormous magnitude with an estimated prevalence of 19 to 35% worldwide. Of all thyroid nodules 5-10% are cancerous and require surgery. By identifying the benign ones unnecessary surgery, the associated morbidity and associated costs could be avoided. Fine needle ...

  1. Fine sand in motion: the influence of interstitial air

    NARCIS (Netherlands)

    Homan, T.A.M.

    2013-01-01

    Sand is a granular material, and therefore it consists of individual grains arranged in a packing. The pores in-between the grains are usually filled with a fluid, in this case air. Now, is this interstitial air able to influence the behavior of the sand bed as a whole? When a ball impacts on fine,

  2. Technical fine-tuning problem in renormalized perturbation theory

    International Nuclear Information System (INIS)

    Foda, O.E.

    1983-01-01

    The technical - as opposed to physical - fine tuning problem, i.e. the stability of tree-level gauge hierarchies at higher orders in renormalized perturbation theory, in a number of different models is studied. These include softly-broken supersymmetric models, and non-supersymmetric ones with a hierarchy of spontaneously-broken gauge symmetries. The models are renormalized using the BPHZ prescription, with momentum subtractions. Explicit calculations indicate that the tree-level hierarchy is not upset by the radiative corrections, and consequently no further fine-tuning is required to maintain it. Furthermore, this result is shown to run counter to that obtained via Dimensional Renormalization, (the only scheme used in previous literature on the subject). The discrepancy originates in the inherent local ambiguity in the finite parts of subtracted Feynman integrals. Within fully-renormalized perturbation theory the answer to the technical fine-tuning question (in the sense of whether the radiative corrections will ''readily'' respect the tree level gauge hierarchy or not) is contingent on the renormalization scheme used to define the model at the quantum level, rather than on the model itself. In other words, the need for fine-tuning, when it arises, is an artifact of the application of a certain class of renormalization schemes

  3. Process for the preparation of fine grain metal carbide powders

    International Nuclear Information System (INIS)

    Gortsema, F.P.

    1976-01-01

    Fine grain metal carbide powders are conveniently prepared from the corresponding metal oxide by heating in an atmosphere of methane in hydrogen. Sintered articles having a density approaching the theoretical density of the metal carbide itself can be fabricated from the powders by cold pressing, hot pressing or other techniques. 8 claims, no drawings

  4. Microstructure and mechanical properties of fine-grained thin ...

    Indian Academy of Sciences (India)

    29

    Microstructure and mechanical properties of fine-grained thin- walled AZ91 tubes processed by a novel combined SPD process. H. Abdolvanda, G. Farajia,*, J. Shahbazi Karamib, M. Baniasadia. aSchool of Mechanical Engineering, College of Engineering, University of Tehran, Tehran, 11155-4563,. Iran. bFaculty of ...

  5. Fine-motor skills testing and prediction of endovascular performance

    DEFF Research Database (Denmark)

    Bech, Bo; Lönn, Lars; Schroeder, Torben V

    2013-01-01

    Performing endovascular procedures requires good control of fine-motor digital movements and hand-eye coordination. Objective assessment of such skills is difficult. Trainees acquire control of catheter/wire movements at various paces. However, little is known to what extent talent plays for novice...

  6. Technical fine-tuning problem in renormalized perturbation theory

    Energy Technology Data Exchange (ETDEWEB)

    Foda, O.E.

    1983-01-01

    The technical - as opposed to physical - fine tuning problem, i.e. the stability of tree-level gauge hierarchies at higher orders in renormalized perturbation theory, in a number of different models is studied. These include softly-broken supersymmetric models, and non-supersymmetric ones with a hierarchy of spontaneously-broken gauge symmetries. The models are renormalized using the BPHZ prescription, with momentum subtractions. Explicit calculations indicate that the tree-level hierarchy is not upset by the radiative corrections, and consequently no further fine-tuning is required to maintain it. Furthermore, this result is shown to run counter to that obtained via Dimensional Renormalization, (the only scheme used in previous literature on the subject). The discrepancy originates in the inherent local ambiguity in the finite parts of subtracted Feynman integrals. Within fully-renormalized perturbation theory the answer to the technical fine-tuning question (in the sense of whether the radiative corrections will ''readily'' respect the tree level gauge hierarchy or not) is contingent on the renormalization scheme used to define the model at the quantum level, rather than on the model itself. In other words, the need for fine-tuning, when it arises, is an artifact of the application of a certain class of renormalization schemes.

  7. Fine5 tantsuteater võitis Vitebskis teise preemia

    Index Scriptorium Estoniae

    2006-01-01

    22. - 26. XI Valgevenes toimunud kaasaegse koreograafia konkursil "International Festival of Modern Choreography" võitsid Laura Kvelstein ja Dmitri Kruus lühiteostega "1 spot, 2 shadows" teise preemia. Konkursi raames toimunud meistriklasse juhendas Fine5 koreograaf Tiina Ollesk

  8. Longing for Clouds - Does Beautiful Weather have to be Fine?

    Directory of Open Access Journals (Sweden)

    Mădălina Diaconu

    2016-01-01

    Full Text Available Any attempt to outline a meteorological aesthetics centered on so-called beautiful weather has to overcome several difficulties: In everyday life, the appreciation of the weather is mostly related to practical interests or reduced to the ideal of stereotypical fine weather that is conceived according to blue-sky thinking irrespective of climate diversity. Also, an aesthetics of fine weather seems, strictly speaking, to be impossible given that such weather conditions usually allow humans to focus on aspects other than weather, which contradicts the autotelic character of beauty. The unreflective equation of beautiful weather with moderately sunny weather and a cloudless sky also collides with the psychological need for variation: even living in a “paradisal” climate would be condemned to end in monotony. Finally, whereas fine weather is related in modern realistic literature to cosmic harmony and a universal natural order, contemporary literary examples show that in the age of the climate change, fine weather may be deceitful and its passive contemplation, irresponsible. This implies the necessity of a reflective aesthetic attitude on weather, as influenced by art, literature, and science, which discovers the poetics of bad weather and the wonder that underlies average weather conditions.

  9. Fine population structure analysis method for genomes of many.

    Science.gov (United States)

    Pan, Xuedong; Wang, Yi; Wong, Emily H M; Telenti, Amalio; Venter, J Craig; Jin, Li

    2017-10-03

    Fine population structure can be examined through the clustering of individuals into subpopulations. The clustering of individuals in large sequence datasets into subpopulations makes the calculation of subpopulation specific allele frequency possible, which may shed light on selection of candidate variants for rare diseases. However, as the magnitude of the data increases, computational burden becomes a challenge in fine population structure analysis. To address this issue, we propose fine population structure analysis (FIPSA), which is an individual-based non-parametric method for dissecting fine population structure. FIPSA maximizes the likelihood ratio of the contingency table of the allele counts multiplied by the group. We demonstrated that its speed and accuracy were superior to existing non-parametric methods when the simulated sample size was up to 5,000 individuals. When applied to real data, the method showed high resolution on the Human Genome Diversity Project (HGDP) East Asian dataset. FIPSA was independently validated on 11,257 human genomes. The group assignment given by FIPSA was 99.1% similar to those assigned based on supervised learning. Thus, FIPSA provides high resolution and is compatible with a real dataset of more than ten thousand individuals.

  10. Systems of pneumatic transportation of cement and other fine ...

    African Journals Online (AJOL)

    Transportation of fine construction materials during the manufacturing of concrete mixes is carried out by systems of pneumatic transportation. The expense and pressure of air in the systems are overstated during their design to avoid the blockage of pipelines. As a result, the energy consumption of the equipment increases.

  11. effect of fines content on the engineering properties of reconstituted

    African Journals Online (AJOL)

    2012-11-03

    Nov 3, 2012 ... ISSN 1115-8443. EFFECT OF FINES CONTENT ON THE ENGINEERING. PROPERTIES OF RECONSTITUTED LATERITIC SOILS IN. WASTE CONTAINMENT APPLICATION. K.J. Osinubia, A.O. Eberemub, A.O. Belloc, A. Adzegah. Department of Civil Engineering, Ahmadu Bello University Zaria, Nigeria.

  12. Assessment of Fine Aggregates from Different Sources in Ibadan ...

    African Journals Online (AJOL)

    OLUWASOGO

    friable particles, amount of materials passing 75μm and organic impurities adopting ASTM standard procedures. Results revealed that sand ... sand are majorly used as fine aggregate materials for concrete production ... 2Department of Civil Engineering, Faculty of Engineering, Adeleke University, P.M.B. 250, Ede, Nigeria.

  13. performance of concrete with partial replacement of fine aggregates

    African Journals Online (AJOL)

    user

    The use of river sand as fine aggregates leads to exploitation of natural resources, lowering of water table, sinking of bridge piers and erosion of river bed [1]. There is a general increase in researches for the use of waste materials in place of natural resources in order to make the concrete industry more sustainable, in terms ...

  14. Mitotic Stress in Cancer: Tipping the Fine Balance

    Indian Academy of Sciences (India)

    Acer

    SUSANTA ROYCHOUDHURY. Saroj Gupta Cancer Center and Research Institute. Former, CSIR-Indian Institute of Chemical Biology. Kolkata. Mitotic Stress in Cancer: Tipping the Fine Balance. 81st Annual Meeting,. Indian Academy of Sciences. 6-8 November 2015. IISER, Pune ...

  15. Do Fine Motor Skills Contribute to Early Reading Development?

    Science.gov (United States)

    Suggate, Sebastian; Pufke, Eva; Stoeger, Heidrun

    2018-01-01

    Background: Little is known about how fine motor skills (FMS) relate to early literacy skills, especially over and above cognitive variables. Moreover, a lack of distinction between FMS, grapho-motor and writing skills may have hampered previous work. Method: In Germany, kindergartners (n = 144, aged 6;1) were recruited before beginning formal…

  16. [Starting with camphor--the progress of Nippon Fine Chemical].

    Science.gov (United States)

    Kimura, Osamu

    2010-01-01

    In 1918, Nippon Fine Chemical Co., Ltd. (NFC) was founded under the name, Nippon Camphor Co., Ltd. for the purpose of unifying the camphor business throughout Japan. The company manufactured purified camphor as a government-monopolized good. Camphor was used as a plasticizer for nitrocellulose, as a moth repellent, as an antimicrobial substance, as a rust inhibitor, and as an active ingredient in medicine. It was also a very important good exported in order to obtain foreign currency. Later on, after World War II and the abolition of the camphor monopoly, the company started manufacturing products related to oils and fats, including higher fatty acids, and expanded its business by developing a new field of chemical industry. In 1971 the company changed its name to Nippon Fine Chemical Co., Ltd., and made a new start as a diversified fine chemicals company. Recently, the fine chemicals division of NFC has concentrated on rather complex molecules, such as active pharmaceutical ingredients, and other chemicals. Since 2000, NFC have started to supply "Presome", precursors of liposome DDS drugs. NFC is strengthening marketing strategies in foreign countries with unique technologies and products.

  17. A TEM Study on the Microstructure of Fine Flaky Graphite

    DEFF Research Database (Denmark)

    Moumeni, Elham; Tiedje, Niels Skat; Horsewell, Andy

    In this investigation the microstructure of the graphite flakes in titanium alloyed cast iron is studied using electron microscopy techniques. Based on this information, growth models for the platelets in the fine graphite flakes in cast iron are considered. Detailed crystallographic analysis...

  18. The cheeseboard in Dutch fine dining restaurants, II: Integration of ...

    African Journals Online (AJOL)

    In Dutch fine dining restaurants, the customer who orders a cheeseboard as part of the dessert is served an assortment of cheeses without regard to the dishes that preceded the cheese. The present paper tries to contribute to a more logical order of main dish and cheeseboard. A panel of 12 tasters judged the order of 6 ...

  19. Fine Coining of Bulk Metal Formed Parts in Digital Environment

    International Nuclear Information System (INIS)

    Pepelnjak, T.; Kuzman, K.; Krusic, V.

    2007-01-01

    At present the production of bulk metal formed parts in the automotive industry must increasingly fulfil demands for narrow tolerance fields. The final goal of the million parts production series is oriented towards zero defect production. This is possible by achieving production tolerances which are even tighter than the prescribed ones. Different approaches are used to meet this demanding objective affected by many process parameters. Fine coining as a final forming operation is one of the processes which enables the production of good manufacturing tolerances and high process stability. The paper presents the analyses of the production of the inner race and a digital evaluation of manufacturing tolerances caused by different material parameters of the workpiece. Digital optimisation of the fine coining with FEM simulations was performed in two phases. Firstly, fine coining of the inner racer in a digital environment was comparatively analysed with the experimental work in order to verify the accuracy and reliability of digitally calculated data. Secondly, based on the geometrical data of a digitally fine coined part, tool redesign was proposed in order to tighten production tolerances and increase the process stability of the near-net-shaped cold formed part

  20. Fine and Gross Motor Ability in Males with ADHD

    Directory of Open Access Journals (Sweden)

    J Gordon Millichap

    2003-09-01

    Full Text Available Both fine and gross motor abilities were evaluated in 10-year-old males with attention deficit hyperactivity disorder (ADHD and compared to a group of control children at the School of Psychology, Curtin University of Technology, Perth, Australia.

  1. Late Quaternary fine silt deposits of Jammu, NW Himalaya: Genesis ...

    Indian Academy of Sciences (India)

    pedal surfaces and rootlets cementing the silt mate- rial. The kankerisation and presence of rootlets suggest in situ soil formation, though incipient in nature. In sections exposed to the northwest. (Aknoor), fine silt deposits are strongly pedo- genised and bioturbated with both horizontal as well as vertical burrows. Thin lenses ...

  2. Fine needle aspiration cytology of breast lumps with histopathologic ...

    African Journals Online (AJOL)

    E-mail: tunjiomotayo@yahoo.co.uk. Conflict of interest: None declared. SUMMARY. Objective: To determine the histopathologic correlation of fine needle aspiration cytology FNAC of breast masses seen in the department of histopathology of the Federal Medical Center Owo, Southwestern Nigeria. Design: This is a 5-year ...

  3. Efficacy of Fine Needle Aspiration Cytology in the Diagnosis of ...

    African Journals Online (AJOL)

    Background: Fine needle aspiration cytology (FNAC) is a safe, easy to perform, cost effective and an accurate procedure used in the diagnosis of thyroid lesions. Objective: In this study we aimed to demonstrate the effectiveness of FNAC in the diagnosis of thyroid swellings in Red Sea State, Sudan. Methods: FNAC from ...

  4. Dynamics of fine structure in the solar chromosphere

    NARCIS (Netherlands)

    Wijn, A.G. de

    2006-01-01

    This thesis is concerned with the dynamics of fine structure of the solar chromosphere and transition region, in both quiet sun and active regions. It contains six chapters of observational studies. It presents a study on the spatial structure and temporal dynamics of reversed granulation; a study

  5. Multiscale physical processes of fine sediment in an estuary

    NARCIS (Netherlands)

    Wan, Y.

    2015-01-01

    This study presented in this book investigates micro- and macro- scale physical processes of a large-scale fine sediment estuarine system with a moderate tidal range as well as a highly seasonal-varying freshwater inflow. Based on a series measured, experimented and modeled results, the research

  6. Fine roots and ectomycorrhizas as indicators of environmental change.

    NARCIS (Netherlands)

    Cudlin, P.; Kieliszewska-Rokicka, B.; Rudawska, M.; Grebenc, T.; Alberton, O.; Lehto, T.; Bakker, M.R.; Borja, I.; Konopka, B.; Leski, T.; Kraigher, H.; Kuyper, T.W.

    2007-01-01

    Human-induced and natural stress factors can affect fine roots and ectomycorrhizas. Therefore they have potential utility as indicators of environmental change. We evaluated, through meta-analysis, the magnitude of the effects of acidic deposition, nitrogen deposition, increased ozone levels,

  7. [Fine root nitrogen contents and morphological adaptations of alpine plants].

    NARCIS (Netherlands)

    Salpagarova, F.S.; van Logtestijn, R. S.; Onipchenko, Vladimir G.; Akhmetzhanova, A.A.; Agafonov, V. A.

    Nitrogen and carbon contents of fine roots were studied for 92 alpine plant species in the Northwest Caucasus. Nitrogen content ranged from 0.43% (Bromus variegatus) to 3.75% (Corydalis conorhiza) with mean value 1.3%. Carbon content ranged from 40.3% (Corydalis conorhiza) to 51.7% (Empetrum nigrum)

  8. Flotation mechanisms of molybdenite fines by neutral oils

    Science.gov (United States)

    Lin, Qing-quan; Gu, Guo-hua; Wang, Hui; Liu, You-cai; Fu, Jian-gang; Wang, Chong-qing

    2018-01-01

    The flotation mechanisms of molybdenite fines by neutral oils were investigated through microflotation test, turbidity measurements, infrared spectroscopy, and interfacial interaction calculations. The results of the flotation test show that at pH 2-11, the floatability of molybdenite fines in the presence of transformer oil is markedly better than that in the presence of kerosene and diesel oil. The addition of transformer oil, which enhances the floatability of molybdenite fines, promotes the aggregation of molybdenite particles. Fourier transform infrared measurements illustrate that physical interaction dominates the adsorption mechanism of neutral oil on molybdenite. Interfacial interaction calculations indicate that hydrophobic attraction is the crucial force that acts among the oil collector, water, and molybdenite. Strong hydrophobic attraction between the oily collector and water provides the strong dispersion capability of the collector in water. Furthermore, the dispersion capability of the collector, not the interaction strength between the oily collectors and molybdenite, has a highly significant role in the flotation system of molybdenite fines. Our findings provide insights into the mechanism of molybdenite flotation.

  9. An Artistic Approach to Fine Arts Interpretation in Higher Education

    Science.gov (United States)

    Selan, Jurij

    2013-01-01

    Art criticism was introduced into art education to help students understand works of art. However, art interpretation methods differ according to the educational goals specified for various types of art students. The fine arts interpretation procedures established in education are usually purely theoretical and exclusively verbal, and are thus…

  10. Short-term genetic consequences of habitat loss and fragmentation for the neotropical palm Oenocarpus bataua.

    Science.gov (United States)

    Browne, L; Ottewell, K; Karubian, J

    2015-11-01

    Habitat loss and fragmentation may impact animal-mediated dispersal of seed and pollen, and a key question is how the genetic attributes of plant populations respond to these changes. Theory predicts that genetic diversity may be less sensitive to such disruptions in the short term, whereas inbreeding and genetic structure may respond more strongly. However, results from studies to date vary in relation to species, context and the parameter being assessed, triggering calls for more empirical studies, especially from the tropics, where plant-animal dispersal mutualisms are both disproportionately common and at risk. We compared the genetic characteristics of adults and recruits in a long-lived palm Oenocarpus bataua in a recently fragmented landscape (fragments and one nearby continuous forest. Our goal was to assess short-term consequences of fragmentation, with a focus on how well empirical data from this system follow theoretical expectations. Mostly congruent with predictions, we found stronger genetic differentiation and fine-scale spatial genetic structure among recruits in fragments compared with recruits in continuous forest, but we did not record differences in genetic diversity or inbreeding, nor did we record any differences between adults in fragments and adults in continuous forest. Our findings suggest that genetic characteristics of populations vary in their sensitivity to change in response to habitat loss and fragmentation, and that fine-scale spatial genetic structure may be a particularly useful indicator of genetic change in recently fragmented landscapes.

  11. Cross-Population Joint Analysis of eQTLs: Fine Mapping and Functional Annotation

    Science.gov (United States)

    Wen, Xiaoquan; Luca, Francesca; Pique-Regi, Roger

    2015-01-01

    Mapping expression quantitative trait loci (eQTLs) has been shown as a powerful tool to uncover the genetic underpinnings of many complex traits at molecular level. In this paper, we present an integrative analysis approach that leverages eQTL data collected from multiple population groups. In particular, our approach effectively identifies multiple independent cis-eQTL signals that are consistent across populations, accounting for population heterogeneity in allele frequencies and linkage disequilibrium patterns. Furthermore, by integrating genomic annotations, our analysis framework enables high-resolution functional analysis of eQTLs. We applied our statistical approach to analyze the GEUVADIS data consisting of samples from five population groups. From this analysis, we concluded that i) jointly analysis across population groups greatly improves the power of eQTL discovery and the resolution of fine mapping of causal eQTL ii) many genes harbor multiple independent eQTLs in their cis regions iii) genetic variants that disrupt transcription factor binding are significantly enriched in eQTLs (p-value = 4.93 × 10-22). PMID:25906321

  12. Restricted gene flow and fine-scale population structuring in tool using New Caledonian crows

    Science.gov (United States)

    Rutz, C.; Ryder, T. B.; Fleischer, R. C.

    2012-04-01

    New Caledonian crows Corvus moneduloides are the most prolific avian tool users. It has been suggested that some aspects of their complex tool use behaviour are under the influence of cultural processes, involving the social transmission—and perhaps even progressive refinement—of tool designs. Using microsatellite and mt-haplotype profiling of crows from three distinct habitats (dry forest, farmland and beachside habitat), we show that New Caledonian crow populations can exhibit significant fine-scale genetic structuring. Our finding that some sites of cultural isolation of crow groups. Restricted movement of birds between local populations at such small spatial scales, especially across habitat boundaries, illustrates how specific tool designs could be preserved over time, and how tool technologies of different crow groups could diverge due to drift and local selection pressures. Young New Caledonian crows have an unusually long juvenile dependency period, during which they acquire complex tool-related foraging skills. We suggest that the resulting delayed natal dispersal drives population-divergence patterns in this species. Our work provides essential context for future studies that examine the genetic makeup of crow populations across larger geographic areas, including localities with suspected cultural differences in crow tool technologies.

  13. Fine Mapping of QUICK ROOTING 1 and 2, Quantitative Trait Loci Increasing Root Length in Rice

    Directory of Open Access Journals (Sweden)

    Yuka Kitomi

    2018-02-01

    Full Text Available The volume that the root system can occupy is associated with the efficiency of water and nutrient uptake from soil. Genetic improvement of root length, which is a limiting factor for root distribution, is necessary for increasing crop production. In this report, we describe identification of two quantitative trait loci (QTLs for maximal root length, QUICK ROOTING 1 (QRO1 on chromosome 2 and QRO2 on chromosome 6, in cultivated rice (Oryza sativa L.. We measured the maximal root length in 26 lines carrying chromosome segments from the long-rooted upland rice cultivar Kinandang Patong in the genetic background of the short-rooted lowland cultivar IR64. Five lines had longer roots than IR64. By rough mapping of the target regions in BC4F2 populations, we detected putative QTLs for maximal root length on chromosomes 2, 6, and 8. To fine-map these QTLs, we used BC4F3 recombinant homozygous lines. QRO1 was mapped between markers RM5651 and RM6107, which delimit a 1.7-Mb interval on chromosome 2, and QRO2 was mapped between markers RM20495 and RM3430-1, which delimit an 884-kb interval on chromosome 6. Both QTLs may be promising gene resources for improving root system architecture in rice.

  14. Sintering of Fine Particles in Suspension Plasma Sprayed Coatings.

    Science.gov (United States)

    Latka, Leszek; Goryachev, Sergey B; Kozerski, Stefan; Pawlowski, Lech

    2010-07-01

    Suspension plasma spraying is a process that enables the production of finely grained nanometric or submicrometric coatings. The suspensions are formulated with the use of fine powder particles in water or alcohol with some additives. Subsequently, the suspension is injected into plasma jet and the liquid additives evaporate. The remaining fine solids are molten and subsequently agglomerate or remain solid, depending on their trajectory in the plasma jet. The coating's microstructure results from these two groups of particles arriving on a substrate or previously deposited coating. Previous experimental studies carried out for plasma sprayed titanium oxide and hydroxyapatite coatings enabled us to observe either a finely grained microstructure or, when a different suspension injection mode was used, to distinguish two zones in the microstructure. These two zones correspond to the dense zone formed from well molten particles, and the agglomerated zone formed from fine solid particles that arrive on the substrate in a solid state. The present paper focuses on the experimental and theoretical analysis of the formation process of the agglomerated zone. The experimental section establishes the heat flux supplied to the coating during deposition. In order to achieve this, calorimetric measurements were made by applying experimental conditions simulating the real coatings' growth. The heat flux was measured to be in the range from 0.08 to 0.5 MW/m²,depending on the experimental conditions. The theoretical section analyzes the sintering during the coating's growth, which concerns the fine particles arriving on the substrate in the solid state. The models of volume, grain boundary and surface diffusion were analyzed and adapted to the size and chemistry of the grains, temperature and time scales corresponding to the suspension plasma spraying conditions. The model of surface diffusion was found to best describe the sintering during suspension plasma spraying. The formation

  15. Sintering of Fine Particles in Suspension Plasma Sprayed Coatings

    Directory of Open Access Journals (Sweden)

    Leszek Latka

    2010-07-01

    Full Text Available Suspension plasma spraying is a process that enables the production of finely grained nanometric or submicrometric coatings. The suspensions are formulated with the use of fine powder particles in water or alcohol with some additives. Subsequently, the suspension is injected into plasma jet and the liquid additives evaporate. The remaining fine solids are molten and subsequently agglomerate or remain solid, depending on their trajectory in the plasma jet. The coating’s microstructure results from these two groups of particles arriving on a substrate or previously deposited coating. Previous experimental studies carried out for plasma sprayed titanium oxide and hydroxyapatite coatings enabled us to observe either a finely grained microstructure or, when a different suspension injection mode was used, to distinguish two zones in the microstructure. These two zones correspond to the dense zone formed from well molten particles, and the agglomerated zone formed from fine solid particles that arrive on the substrate in a solid state. The present paper focuses on the experimental and theoretical analysis of the formation process of the agglomerated zone. The experimental section establishes the heat flux supplied to the coating during deposition. In order to achieve this, calorimetric measurements were made by applying experimental conditions simulating the real coatings’ growth. The heat flux was measured to be in the range from 0.08 to 0.5 MW/m2,depending on the experimental conditions. The theoretical section analyzes the sintering during the coating’s growth, which concerns the fine particles arriving on the substrate in the solid state. The models of volume, grain boundary and surface diffusion were analyzed and adapted to the size and chemistry of the grains, temperature and time scales corresponding to the suspension plasma spraying conditions. The model of surface diffusion was found to best describe the sintering during suspension

  16. Genetic and Linguistic Coevolution in Northern Island Melanesia

    Science.gov (United States)

    Hunley, Keith; Dunn, Michael; Lindström, Eva; Reesink, Ger; Terrill, Angela; Healy, Meghan E.; Koki, George; Friedlaender, Françoise R.; Friedlaender, Jonathan S.

    2008-01-01

    Recent studies have detailed a remarkable degree of genetic and linguistic diversity in Northern Island Melanesia. Here we utilize that diversity to examine two models of genetic and linguistic coevolution. The first model predicts that genetic and linguistic correspondences formed following population splits and isolation at the time of early range expansions into the region. The second is analogous to the genetic model of isolation by distance, and it predicts that genetic and linguistic correspondences formed through continuing genetic and linguistic exchange between neighboring populations. We tested the predictions of the two models by comparing observed and simulated patterns of genetic variation, genetic and linguistic trees, and matrices of genetic, linguistic, and geographic distances. The data consist of 751 autosomal microsatellites and 108 structural linguistic features collected from 33 Northern Island Melanesian populations. The results of the tests indicate that linguistic and genetic exchange have erased any evidence of a splitting and isolation process that might have occurred early in the settlement history of the region. The correlation patterns are also inconsistent with the predictions of the isolation by distance coevolutionary process in the larger Northern Island Melanesian region, but there is strong evidence for the process in the rugged interior of the largest island in the region (New Britain). There we found some of the strongest recorded correlations between genetic, linguistic, and geographic distances. We also found that, throughout the region, linguistic features have generally been less likely to diffuse across population boundaries than genes. The results from our study, based on exceptionally fine-grained data, show that local genetic and linguistic exchange are likely to obscure evidence of the early history of a region, and that language barriers do not particularly hinder genetic exchange. In contrast, global patterns may

  17. Fine motor ability and psychiatric disorders in youth.

    Science.gov (United States)

    Mendes, Lorenna Sena Teixeira; Manfro, Gisele Gus; Gadelha, Ary; Pan, Pedro Mario; Bressan, Rodrigo Affonseca; Rohde, Luis Augusto; Salum, Giovanni Abrahão

    2017-12-05

    Impaired fine motor ability has been linked to several domains of psychopathology. However, studies validating the specificity of this association among several categorical psychiatric disorders are still needed. The aim of this study was to assess differences in fine motor ability performance among four non-overlapping groups of psychiatric disorders and a group of typical developing comparisons (TDC). Our sample consisted of 2035 subjects aged 6-14-year-old. Diagnoses of psychiatric disorders were performed with the Development and Well-Being Assessment (DAWBA). Five non-overlapping groups without comorbidity were formed: phobic disorders (n = 101), distress disorders (n = 82), attention deficit hyperactivity disorder (ADHD) (n = 133), oppositional defiant disorder/conduct disorder (ODD/CD) (n = 52) and one group of typical developing comparisons (TDC) (n = 1667). Fine motor ability was evaluated by three tasks: sequential finger-thumb opposition, Oseretsky, and pronation/supination tests. Each task was assessed by total time to perform the movement and levels of accuracy, fluency, symmetry, precision, and coordination. We found that, when compared to TDC, the ADHD group performed more poorly in total fine motor ability (mean difference = - 0.28; p = 0.014), time to complete the task (mean difference = 0.36; p coordination (mean difference = - 0.25; p = 0.042). The ADHD group also took more time to complete the task than the ODD/CD group (mean difference = 0.45; p = 0.037). No other significant between-group differences were found. Additional analyses showed those differences were statistically significant for all ADHD dimensions. Our results suggest that children with ADHD present impairments in all aspects of fine motor abilities compared to TDC, a difference not found in other psychiatric disorders.

  18. ChemCam analysis of Martian fine dust

    Science.gov (United States)

    Lasue, Jeremie; Mangold, Nicolas; Cousin, Agnes; Meslin, Pierre-Yves; Wiens, Roger; Gasnault, Olivier; Rapin, William; Schroder, Susanne; Ollila, Ann; Fabre, Cécile; Berger, Gilles; Le Mouélic, Stéphane; Dehouck, Erwin; Forni, Olivier; Maurice, Sylvestre; Anderson, Ryan; Bridges, Nathan; Clark, Benton; Clegg, Samuel; d'Uston, Claude; Goetz, Walter; Johnson, Jeffrey R.; Lanza, Nina; Madsen, Morten; Melikechi, Noureddine; Newsom, Horton; Sautter, Violaine; Martin-Torres, Javier; Zorzano, Maria-Paz; MSL Science Team

    2016-10-01

    In this work, we examine the chemical composition of dust observed by the Chemistry Camera (ChemCam) instrument onboard the Mars Science Laboratory (MSL) rover at Gale Crater. The Laser Induced Breakdown Spectroscopy technique analyses samples without preparation, which allows detection of the elemental composition of surface deposits. Mars aeolian fine dust (planet and contributes to the local geology analyzed by MSL. Its composition can also be retrieved on the ChemCam Calibration Targets (CCCT) by subtraction of the well characterized CCCT spectra. The CCCT include eight glasses and ceramics that have been generated to simulate Martian rocks of interest and two targets of a single element (graphite for carbon and an alloy of titanium). ChemCam passive spectroscopy also indicates varying deposition of the dust cover on the CCCT.Major elements are quantified and shown to be very similar to the fine soils encountered at Gale crater. The composition is also similar to the soils and fine dust measured by APXS for the elements common to both instruments. The minor elements quantified by ChemCam (Ba, Sr, Rb, Li, Mn, Cr) are within the range of soil surveys, but we see a higher concentration of Li than in other types of remotely characterized targets. Sulfur is possibly detected at the ChemCam limit of detection. Hydrogen is clearly identified, indicating that this fine dust is a contributor to the H content of the martian soils, as also detected by the SAM and CheMin instruments, and provides constraints as to which fraction of the Martian surface is hydrated and altered. In conclusion, the finest fraction of dust particles on the surface of Mars contains hydrated components mixed intimately within the fine aeolian dust fraction, suggesting that this dust likely originates from mechanical weathering of altered grains.

  19. Ultra-Fine Grained Dual-Phase Steels

    Directory of Open Access Journals (Sweden)

    Matthias Militzer

    2012-10-01

    Full Text Available This paper provides an overview on obtaining low-carbon ultra-fine grained dual-phase steels through rapid intercritical annealing of cold-rolled sheet as improved materials for automotive applications. A laboratory processing route was designed that involves cold-rolling of a tempered martensite structure followed by a second tempering step to produce a fine grained aggregate of ferrite and carbides as the initial microstructure for rapid intercritical annealing. The intercritical annealing step was performed with heating and cooling rates of at least 100 °C/s and a holding time of 30 s. The intercritical temperature was selected to result in 20- 35% martensite in the final microstructures for C-Mn steels with carbon contents of 0.06, 0.12 and 0.17 wt%, respectively. The proposed processing routes produced an ultra-fine grained ferrite-martensite structure withgrain sizes of approximately 1 ?m for all three steels. The tensile strength of these ultra-fine grained dualphase steels can be increased by up to 200 MPa as compared to coarse-grained dual-phase steels while maintaining uniform elongation values. The rather narrow processing window necessary to obtain these properties was evaluated by determining the effect of intercritical annealing conditions on microstructure evolution. Further, the experimental results were confirmed with phase field simulations of austenite formation indicating that rapid heat treatment cycles are essential to obtain fine grained intercritical austenite that leads to martensite islands with sizes of 1 ?m and below in the final microstructure.

  20. Factor analysis of the contextual fine motor questionnaire in children.

    Science.gov (United States)

    Lin, Chin-Kai; Meng, Ling-Fu; Yu, Ya-Wen; Chen, Che-Kuo; Li, Kuan-Hua

    2014-02-01

    Most studies treat fine motor as one subscale in a developmental test, hence, further factor analysis of fine motor has not been conducted. In fact, fine motor has been treated as a multi-dimensional domain from both clinical and theoretical perspectives, and therefore to know its factors would be valuable. The aim of this study is to analyze the internal consistency and factor validity of the Contextual Fine Motor Questionnaire (CFMQ). Based on the ecological observation and literature, the Contextual Fine Motor Questionnaire (CFMQ) was developed and includes 5 subscales: Pen Control, Tool Use During Handicraft Activities, the Use of Dining Utensils, Connecting and Separating during Dressing and Undressing, and Opening Containers. The main purpose of this study is to establish the factorial validity of the CFMQ through conducting this factor analysis study. Among 1208 questionnaires, 904 were successfully completed. Data from the children's CFMQ submitted by primary care providers was analyzed, including 485 females (53.6%) and 419 males (46.4%) from grades 1 to 5, ranging in age from 82 to 167 months (M=113.9, SD=16.3). Cronbach's alpha was used to measure internal consistency and explorative factor analysis was applied to test the five factor structures within the CFMQ. Results showed that Cronbach's alpha coefficient of the CFMQ for 5 subscales ranged from .77 to .92 and all item-total correlations with corresponding subscales were larger than .4 except one item. The factor loading of almost all items classified to their factor was larger than .5 except 3 items. There were five factors, explaining a total of 62.59% variance for the CFMQ. In conclusion, the remaining 24 items in the 5 subscales of the CFMQ had appropriate internal consistency, test-retest reliability and construct validity. Copyright © 2013 Elsevier Ltd. All rights reserved.

  1. Physicians' knowledge of genetics and genetic tests.

    Science.gov (United States)

    Hofman, K J; Tambor, E S; Chase, G A; Geller, G; Faden, R R; Holtzman, N A

    1993-08-01

    To assess primary care physicians' and psychiatrists' knowledge of genetics and genetic tests and the factors associated with differences in these physicians' knowledge. Questionnaires were mailed in 1991 to 1,795 primary care physicians (family physicians, internists, pediatricians, obstetrician-gynecologists) and psychiatrists who had graduated from medical school between 1950 and 1985 (67.6% of the sample had graduated after 1970) and who were members of professional societies. The questions elicited demographic and practice characteristics as well as knowledge of genetics concepts and facts and awareness of the availability of genetic tests. To validate the questionnaire, 360 medical geneticists and genetic counselors received questionnaires. Statistical analysis involved arc-sine function transformation, t-tests, analyses of variance, F-tests, Tukey's HSD, and stepwise multiple regression. A total of 1,140 (64.8%) of the non-geneticist physicians responded. They correctly answered an average of 73.9%, SD, 13.9%, of the knowledge items, compared with 94.6%, SD, 4.2%, for the genetics professionals (p < .001). The most significant predictors of knowledge were recency of graduation from medical school and practicing in primary care specialties in which exposure to genetics problems is likely. Other significant predictors (from most to least important) were graduation from a U.S. medical school, willingness to adopt a new predictive test before it becomes standard practice, not using pharmaceutical companies as a source of information about new medical practices, and taking a required genetics course in medical school. The results suggest that knowledge of genetics and genetic tests is increasing among physicians, particularly among more recent graduates and physicians who are exposed to genetics problems in their practices, but deficiencies remain. Although a medical school course in genetics may improve knowledge, it is not sufficient. Greater emphasis is needed

  2. What Is Genetic Ancestry Testing?

    Science.gov (United States)

    ... What is genetic ancestry testing? What is genetic ancestry testing? Genetic ancestry testing, or genetic genealogy, is ... with other groups. For more information about genetic ancestry testing: The University of Utah provides video tutorials ...

  3. Interplay between genetic and epigenetic mechanisms in rheumatoid arthritis.

    Science.gov (United States)

    Frank-Bertoncelj, Mojca; Klein, Kerstin; Gay, Steffen

    2017-04-01

    Genetic and environmental factors contribute to the risk for rheumatoid arthritis (RA), with epigenetics serving as a possible interface through which risk factors contribute to RA. High-throughput technologies for interrogating genome and epigenome, and the availability of genetic and epigenetic datasets across a diversity of cell types, enable the identification of candidate causal genetic variants for RA to study their function in core RA processes. To date, RA risk variants were studied in the immune cells but not joint resident cells, for example, synovial fibroblasts. Synovial fibroblasts from different joints are distinct, anatomically specialized cells, defined by joint-specific transcriptomes, epigenomes and phenotypes. Cell type-specific analysis of epigenetic changes, together with genetic fine mapping and interrogation of chromatin 3D interactions may identify new disease relevant pathways, potential therapeutic targets and biomarkers for RA progression or therapy response.

  4. Fine-tuning of the setting of critical day length by two casein kinases in rice photoperiodic flowering.

    Science.gov (United States)

    Nemoto, Yasue; Hori, Kiyosumi; Izawa, Takeshi

    2018-01-23

    Many short-day plants have a critical day length that fixes the schedule for flowering time, limiting the range of natural growth habitats (or growth and cultivation areas). Thus, fine-tuning of the critical day-length setting in photoperiodic flowering determines ecological niches within latitudinal clines; however, little is known about the molecular mechanisms controlling the fine-tuning of the critical day-length setting in plants. Previously, we determined that florigen genes are regulated by day length, and identified several key genes involved in setting the critical day length in rice. Using a set of chromosomal segment substitution lines with the genetic background of an elite temperate japonica cultivar, we performed a series of expression analyses of flowering-time genes to identify those responsible for setting the critical day-length in rice. Here, we identified two casein kinase genes, Hd16 and Hd6, which modulate the expression of florigen genes within certain restricted ranges of photoperiod, thereby fine-tuning the critical day length. In addition, we determined that Hd16 functions as an enhancer of the bifunctional action of Hd1 (the Arabidopsis CONSTANS ortholog) in rice. Utilization of the natural variation in Hd16 and Hd6 was only found among temperate japonica cultivars adapted to northern areas. Therefore, this fine-tuning of the setting of the critical day length may contribute to the potential northward expansion of rice cultivation areas. © The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  5. Constraints on eQTL Fine Mapping in the Presence of Multisite Local Regulation of Gene Expression

    Directory of Open Access Journals (Sweden)

    Biao Zeng

    2017-08-01

    Full Text Available Expression quantitative trait locus (eQTL detection has emerged as an important tool for unraveling of the relationship between genetic risk factors and disease or clinical phenotypes. Most studies use single marker linear regression to discover primary signals, followed by sequential conditional modeling to detect secondary genetic variants affecting gene expression. However, this approach assumes that functional variants are sparsely distributed and that close linkage between them has little impact on estimation of their precise location and the magnitude of effects. We describe a series of simulation studies designed to evaluate the impact of linkage disequilibrium (LD on the fine mapping of causal variants with typical eQTL effect sizes. In the presence of multisite regulation, even though between 80 and 90% of modeled eSNPs associate with normally distributed traits, up to 10% of all secondary signals could be statistical artifacts, and at least 5% but up to one-quarter of credible intervals of SNPs within r2 > 0.8 of the peak may not even include a causal site. The Bayesian methods eCAVIAR and DAP (Deterministic Approximation of Posteriors provide only modest improvement in resolution. Given the strong empirical evidence that gene expression is commonly regulated by more than one variant, we conclude that the fine mapping of causal variants needs to be adjusted for multisite influences, as conditional estimates can be highly biased by interference among linked sites, but ultimately experimental verification of individual effects is needed. Presumably similar conclusions apply not just to eQTL mapping, but to multisite influences on fine mapping of most types of quantitative trait.

  6. Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon.

    Directory of Open Access Journals (Sweden)

    Yu Cui

    Full Text Available The ND18 strain of Barley stripe mosaic virus (BSMV infects several lines of Brachypodium distachyon, a recently developed model system for genomics research in cereals. Among the inbred lines tested, Bd3-1 is highly resistant at 20 to 25 °C, whereas Bd21 is susceptible and infection results in an intense mosaic phenotype accompanied by high levels of replicating virus. We generated an F(6:7 recombinant inbred line (RIL population from a cross between Bd3-1 and Bd21 and used the RILs, and an F(2 population of a second Bd21 × Bd3-1 cross to evaluate the inheritance of resistance. The results indicate that resistance segregates as expected for a single dominant gene, which we have designated Barley stripe mosaic virus resistance 1 (Bsr1. We constructed a genetic linkage map of the RIL population using SNP markers to map this gene to within 705 Kb of the distal end of the top of chromosome 3. Additional CAPS and Indel markers were used to fine map Bsr1 to a 23 Kb interval containing five putative genes. Our study demonstrates the power of using RILs to rapidly map the genetic determinants of BSMV resistance in Brachypodium. Moreover, the RILs and their associated genetic map, when combined with the complete genomic sequence of Brachypodium, provide new resources for genetic analyses of many other traits.

  7. Fine-grained hodoscopes based on scintillating optical fibers

    International Nuclear Information System (INIS)

    Borenstein, S.R.; Strand, R.C.

    1981-01-01

    In order to exploit the high event rates at ISABELLE, it will be necessary to have fast detection with fine spatial resolution. The authors are currently constructing a prototype fine-grained hodoscope, the elements of which are scintillating optical fibers. The fibers have been drawn from commercially available plastic scintillator which has been clad with a thin layer of silicone. So far it has been demonstrated with one mm diameter fibers, that with a photodetector at each end, the fibers are more than 99% efficient for lengths of about 60 cm. The readout will be accomplished either with small diameter photomultiplier tubes or avalanche photodiodes used either in the linear or Geiger mode. The program of fiber development and evaluation is described. The status of the APD as a readout element is discussed, and an optical encoding readout scheme is described for events of low multiplicity

  8. Motion Simulation Analysis of Rail Weld CNC Fine Milling Machine

    Science.gov (United States)

    Mao, Huajie; Shu, Min; Li, Chao; Zhang, Baojun

    CNC fine milling machine is a new advanced equipment of rail weld precision machining with high precision, high efficiency, low environmental pollution and other technical advantages. The motion performance of this machine directly affects its machining accuracy and stability, which makes it an important consideration for its design. Based on the design drawings, this article completed 3D modeling of 60mm/kg rail weld CNC fine milling machine by using Solidworks. After that, the geometry was imported into Adams to finish the motion simulation analysis. The displacement, velocity, angular velocity and some other kinematical parameters curves of the main components were obtained in the post-processing and these are the scientific basis for the design and development for this machine.

  9. The fine structure of the Saturnian ring system

    International Nuclear Information System (INIS)

    Houpis, H.L.F.; Mendis, D.A.

    1983-01-01

    A dust disc within a planetary magnetosphere constitutes a novel type of dust-ring current. Such an azimuthal current carrying dust disc is subject to the dusty plasma analog of the well known finite-resistivity 'tearing' mode instability in regular plasma current sheets, at long wavelengths. It is proposed that the presently observed fine ringlet structure of the Saturnian ring system is a relic of this process operating at cosmogonic times and breaking up the initial proto-ring (which may be regarded as an admixture of fine dust and plasma) into an ensemble of thin ringlets. It is shown that this instability developes at a rate that is many orders of magnitude faster than any other known instability, when the disc thickness reaches a value that is comparable to its present observed value. (Auth.)

  10. Vortex Filaments in Grids for Scalable, Fine Smoke Simulation.

    Science.gov (United States)

    Meng, Zhang; Weixin, Si; Yinling, Qian; Hanqiu, Sun; Jing, Qin; Heng, Pheng-Ann

    2015-01-01

    Vortex modeling can produce attractive visual effects of dynamic fluids, which are widely applicable for dynamic media, computer games, special effects, and virtual reality systems. However, it is challenging to effectively simulate intensive and fine detailed fluids such as smoke with fast increasing vortex filaments and smoke particles. The authors propose a novel vortex filaments in grids scheme in which the uniform grids dynamically bridge the vortex filaments and smoke particles for scalable, fine smoke simulation with macroscopic vortex structures. Using the vortex model, their approach supports the trade-off between simulation speed and scale of details. After computing the whole velocity, external control can be easily exerted on the embedded grid to guide the vortex-based smoke motion. The experimental results demonstrate the efficiency of using the proposed scheme for a visually plausible smoke simulation with macroscopic vortex structures.

  11. A Case Study of I’ll Be Fine

    Directory of Open Access Journals (Sweden)

    Angela Ferraiolo

    2017-04-01

    Full Text Available This case study of I’ll Be Fine describes my creation of a passively interactive, “playable” movie for networked screens, and outlines reasons why this story is an instance of a new genre of storytelling that might be called “playable narrative”. Although the piece is interactive, and while it seems to satisfy certain features of the activity of play, I’ll Be Fine does not offer opportunities for strategy, competition, or closure, and does not proceed towards goals or outcomes, but seeks to construct meaning cinematically, proceeding sequentially across planes or layers, and using a spatial design much like the cinematic compositional scheme of background, middle ground, and foreground. While a general model for the spatial construction of playable movies is outside the scope of this writing, the following description of my design concepts are meant to delineate certain aspects of working with spatiality and playability while constructing an interactive story.

  12. Visual imaging capacity and imagery control in Fine Arts students.

    Science.gov (United States)

    Pérez-Fabello, Maria José; Campos, Alfredo; Gómez-Juncal, Rocío

    2007-06-01

    This study investigated relationships between visual imaging abilities (imaging capacity and imagery control) and academic performance in 146 Fine Arts students (31 men, 115 women). Mean age was 22.3 yr. (SD= 1.9; range 20-26 yr.). All of the participants who volunteered for the experiment regularly attended classes and were first, second, or third year students. For evaluation of imaging abilities, the Spanish versions of the Gordon Test of Visual Imagery Control, the Vividness of Visual Imagery Questionnaire, the Verbalizer-Visualizer Questionnaire, and Betts' Questionnaire Upon Mental Imagery were used. Academic performance was assessed in four areas, Drawing, Painting, Sculpture, and Complementary Subjects, over a three-year period. The results indicate that imagery control was associated with academic performance in Fine Arts. These findings are discussed in the context of previous studies, and new lines of research are proposed.

  13. NMC and the Fine-Tuning Problem on the Brane

    Directory of Open Access Journals (Sweden)

    A. Safsafi

    2014-01-01

    Full Text Available We propose a new solution to the fine-tuning problem related to coupling constant λ of the potential. We study a quartic potential of the form λϕ4 in the framework of the Randall-Sundrum type II braneworld model in the presence of a Higgs field which interacts nonminimally with gravity via a possible interaction term of the form -(ξ/2ϕ2R. Using the conformal transformation techniques, the slow-roll parameters in high energy limit are reformulated in the case of a nonminimally coupled scalar field. We show that, for some value of a coupling parameter ξ and brane tension T, we can eliminate the fine-tuning problem. Finally, we present graphically the solutions of several values of the free parameters of the model.

  14. Coarse-to-fine region selection and matching

    KAUST Repository

    Yang, Yanchao

    2015-10-15

    We present a new approach to wide baseline matching. We propose to use a hierarchical decomposition of the image domain and coarse-to-fine selection of regions to match. In contrast to interest point matching methods, which sample salient regions to reduce the cost of comparing all regions in two images, our method eliminates regions systematically to achieve efficiency. One advantage of our approach is that it is not restricted to covariant salient regions, which is too restrictive under large viewpoint and leads to few corresponding regions. Affine invariant matching of regions in the hierarchy is achieved efficiently by a coarse-to-fine search of the affine space. Experiments on two benchmark datasets shows that our method finds more correct correspondence of the image (with fewer false alarms) than other wide baseline methods on large viewpoint change. © 2015 IEEE.

  15. Subjugated in the Creative Industries The Fine Arts in Singapore

    DEFF Research Database (Denmark)

    Ooi, Can-Seng

    2011-01-01

    and enthuse many people into the creative industries. Such notions of creativity contrast against the fine arts. Regardless, as this paper examines the situation in Singapore, shows that fine artists in the city-state are finding themselves internalizing a market logic and have tied their art practices......The arts and culture are considered core in a creative industries strategy. But the promotion of the creative industries brings about revised notions of creativity. These revised notions are being applied to the arts. Creativity is now seen to be largely manageable. All individuals are made...... to believe that they can be creative. Not only that, creativity is seen to be a money spinner. Workers should tap into their creativity and bring about innovations in the work place. Pupils are taught to tap into their creativity and to think outside the box. Such views on creativity galvanize the public...

  16. Frictionless Demonstration Using Fine Plastic Beads For Teaching Mechanics

    International Nuclear Information System (INIS)

    Ishii, K.; Kagawa, K.; Khumaeni, A.; Kurniawan, K. H.

    2010-01-01

    New equipment for demonstrating laws of mechanics have successfully been constructed utilizing fine sphere plastic beads (0.3 mm in diameter). Fine plastic beads function as ball bearings to reduce the friction between the object and the plate surface. By this method, a quantitative measurement of energy conservation law has successfully been carried out with a small error of less 3%. The strong advantage of this frictionless method is that we can always use the same objects like Petri dishes for demonstrating many kinds of mechanics laws, such as the first, second, and the third laws of motion, momentum conservation law, and energy conservation law. This demonstration method surely has a beneficial effect for students, who can then understand mechanics laws systematically with a unified concept and no confusion.

  17. Graphene directed architecture of fine engineered nanostructures with electrochemical applications

    DEFF Research Database (Denmark)

    Hou, Chengyi; Zhang, Minwei; Halder, Arnab

    2017-01-01

    . In this review, we aim to highlight some recent efforts devoted to rational design, assembly and fine engineering of electrochemically active nanostructures using graphene or/and its derivatives as soft templates for controlled synthesis and directed growth. We organize the contents according to the chemically...... classified nanostructures, including metallic nanostructures, self-assembled organic and supramolecular structures, and fine engineered metal oxides. In these cases, graphene templates either sacrificed during templating synthesis or retained as support for final products. We also discuss remained challenges...... and future perspective in the graphene-templating design and synthesis of various materials. Overall, this review could offer crucial insights into the nanoscale engineering of new nanostructures using graphene as a soft template and their potential applications in electrochemical science and technology. We...

  18. The dispersion of fine chitosan particles by beads-milling

    Science.gov (United States)

    Rochima, Emma; Utami, Safira; Hamdani, Herman; Azhary, Sundoro Yoga; Praseptiangga, Danar; Joni, I. Made; Panatarani, Camellia

    2018-02-01

    This research aimed to produce fine chitosan particles from a crab shell waste by beads-milling method by two different concentration of PEG as dispersing agent (150 and 300 wt. %). The characterization was performed to obtain the size and size distribution, the characteristics of functional groups and the degree of deacetylation. The results showed that the chitosan fine particles was obtained with a milling time 120 minutes with the best concentration of PEG 400 150 wt. %. The average particle size of the as-prepared suspension is 584 nm after addition of acetic acid solution (1%, v/v). Beads milling process did not change the glucosamine and N-acetylglucosamine content on chitosan structure which is indicated by degree of deacetylation higher than 70%. It was concluded that beads milling process can be applied to prepare chitosan fineparticles by proper adjustment in the milling time, pH and dosage of dispersing agent.

  19. Cosmologically safe QCD axion without fine-tuning

    International Nuclear Information System (INIS)

    Yamada, Masaki; Yanagida, Tsutomu T.; Yonekura, Kazuya

    2015-10-01

    Although QCD axion models are widely studied as solutions to the strong CP problem, they generically confront severe fine-tuning problems to guarantee the anomalous PQ symmetry. In this letter, we propose a simple QCD axion model without any fine-tunings. We introduce an extra dimension and a pair of extra quarks living on two branes separately, which is also charged under a bulk Abelian gauge symmetry. We assume a monopole condensation on our brane at an intermediate scale, which implies that the extra quarks develop the chiral symmetry breaking and the PQ symmetry is broken. In contrast to the original Kim's model, our model explains the origin of the PQ symmetry thanks to the extra dimension and avoids the cosmological domain wall problem because of the chiral symmetry breaking in the Abelian gauge theory.

  20. Flocculation of fine fluorite particles with Corynebacterium xerosis

    Directory of Open Access Journals (Sweden)

    Haas Sandra R.

    1999-01-01

    Full Text Available The treatment of fine particles dispersed in liquids is common in several industries and especially important in mineral processing. The efficiency of settling operations can be substantially increased by flocculation. The aim of this work was to study the flocculation of fine fluorite particles by the bacterium Corynebacterium xerosis. Flocculation tests, microelectrophoresis measurements and optical microscopy were used to evaluate flocculation. The results showed that C. xerosis cells adhere to the fluorite surfaces promoting the aggregation of the particles. High quality flocs can be obtained rapidly at pH 7.0 using a cell concentration of 40 mg/l, considerably lower than previously reported in the literature. The results are discussed with reference to the surface characteristics of the mineral and of the microorganism.

  1. Two-Locus Likelihoods Under Variable Population Size and Fine-Scale Recombination Rate Estimation.

    Science.gov (United States)

    Kamm, John A; Spence, Jeffrey P; Chan, Jeffrey; Song, Yun S

    2016-07-01

    Two-locus sampling probabilities have played a central role in devising an efficient composite-likelihood method for estimating fine-scale recombination rates. Due to mathematical and computational challenges, these sampling probabilities are typically computed under the unrealistic assumption of a constant population size, and simulation studies have shown that resulting recombination rate estimates can be severely biased in certain cases of historical population size changes. To alleviate this problem, we develop here new methods to compute the sampling probability for variable population size functions that are piecewise constant. Our main theoretical result, implemented in a new software package called LDpop, is a novel formula for the sampling probability that can be evaluated by numerically exponentiating a large but sparse matrix. This formula can handle moderate sample sizes ([Formula: see text]) and demographic size histories with a large number of epochs ([Formula: see text]). In addition, LDpop implements an approximate formula for the sampling probability that is reasonably accurate and scales to hundreds in sample size ([Formula: see text]). Finally, LDpop includes an importance sampler for the posterior distribution of two-locus genealogies, based on a new result for the optimal proposal distribution in the variable-size setting. Using our methods, we study how a sharp population bottleneck followed by rapid growth affects the correlation between partially linked sites. Then, through an extensive simulation study, we show that accounting for population size changes under such a demographic model leads to substantial improvements in fine-scale recombination rate estimation. Copyright © 2016 by the Genetics Society of America.

  2. Interactions Between Pinus taeda (loblolly) Fine Roots and Soil Fungi: Impacts of Elevated CO2, N Availability, and Spatial Distribution of Fungi on Fine Root Persistence and Turnover

    Science.gov (United States)

    Strand, A.; Beidler, K.; McGlinn, D.; Pritchard, S. G.

    2016-12-01

    Fine root turnover represents the most significant mode of flux from plants into soil C pools. Unfortunately fine root senescence and decomposition, processes critical in turnover, are particularly understudied. For example, little is known about either the factors that influence fine-root decomposition or the fate of compounds they contain during root death. Better understanding fine root senescence and decomposition should reduce uncertainty associated with global climate models; including re-uptake of materials in dying leaves into these models has already been shown to increase their accuracy. Over 4400 individual fine-roots and 4734 rhizomorphs were tracked from initiation until disintegration over 12 years using minirhizotrons at the Duke FACE site. Image-based approaches such as minirhizotrons cannot directly assess fine-root physiological status. To assess fine-root function directly, we are now conducting manipulative experiments in P. taeda in which fine-root senescence is induced through two treatments, steam- and direct hand-girdling. Physiological status is then assessed by examining gene-expression, root anatomy and chemical composition of manipulated roots. Changing [CO2] did not change persistence times for roots, but did impact rhizomorph persistence. Both roots and rhizomorphs showed interactions between effects of N and CO2 on persistence. Most interesting is the interaction between fine-roots and rhizomorphs: fine root persistence times are reduced in the presence of rhizomorphs, but this effect depends on the amount of N available. Finally, we found experimentally inducing senescence via steam girdling to be very effective relative to hand-girdling. These results provide evidence of the importance of priming on function of soil fungi and the role of N availability on fine-root turnover. The ability to stimulate fine-root senescence provides a powerful experimental tool to examine the fates of resources contained in fine-root pools as these

  3. Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information

    Directory of Open Access Journals (Sweden)

    Wang S Alex

    2010-01-01

    Full Text Available Abstract Background The genetic contributions to human common disorders and mouse genetic models of disease are complex and often overlapping. In common human diseases, unlike classical Mendelian disorders, genetic factors generally have small effect sizes, are multifactorial, and are highly pleiotropic. Likewise, mouse genetic models of disease often have pleiotropic and overlapping phenotypes. Moreover, phenotypic descriptions in the literature in both human and mouse are often poorly characterized and difficult to compare directly. Methods In this report, human genetic association results from the literature are summarized with regard to replication, disease phenotype, and gene specific results; and organized in the context of a systematic disease ontology. Similarly summarized mouse genetic disease models are organized within the Mammalian Phenotype ontology. Human and mouse disease and phenotype based gene sets are identified. These disease gene sets are then compared individually and in large groups through dendrogram analysis and hierarchical clustering analysis. Results Human disease and mouse phenotype gene sets are shown to group into disease and phenotypically relevant groups at both a coarse and fine level based on gene sharing. Conclusion This analysis provides a systematic and global perspective on the genetics of common human disease as compared to itself and in the context of mouse genetic models of disease.

  4. Hand/Eye Coordination For Fine Robotic Motion

    Science.gov (United States)

    Lokshin, Anatole M.

    1992-01-01

    Fine motions of robotic manipulator controlled with help of visual feedback by new method reducing position errors by order of magnitude. Robotic vision subsystem includes five cameras: three stationary ones providing wide-angle views of workspace and two mounted on wrist of auxiliary robot arm. Stereoscopic cameras on arm give close-up views of object and end effector. Cameras measure errors between commanded and actual positions and/or provide data for mapping between visual and manipulator-joint-angle coordinates.

  5. Fine-grained LTE Radio Link Estimation for Mobile Phones

    OpenAIRE

    Bui, Nicola; Michelinakis, Foivos; Widmer, Joerg

    2017-01-01

    Recently, spectrum optimization solutions require mobile phones to obtain precise, accurate and fine-grained estimates of the radio link data rate. In particular, the effectiveness of anticipatory schemes depends on the granularity of these measurements. In this paper we use a reliable LTE control channel sniffer (OWL) to extensively compare mobile phone measurements against exact LTE radio link data rates. We also provide a detailed study of latencies measured on mobile phones, the sniffer, ...

  6. Assessment of fine aggregates from different sources in Ibadan and ...

    African Journals Online (AJOL)

    Assessment of natural sand being used as fine aggregate for concrete production in Ibadan and its environs was carried out. Ten sources (F1 – F10) were selected for the study; four (F5, F6, F7, F8) were river sand sources while six (F1, F2, F3, F4, F9, F10) were burrow pit sand sources. Samples from each source were ...

  7. Revised Soil Classification System for Coarse-Fine Mixtures

    KAUST Repository

    Park, Junghee

    2017-04-17

    Soil classification systems worldwide capture great physical insight and enable geotechnical engineers to anticipate the properties and behavior of soils by grouping them into similar response categories based on their index properties. Yet gravimetric analysis and data trends summarized from published papers reveal critical limitations in soil group boundaries adopted in current systems. In particular, current classification systems fail to capture the dominant role of fines on the mechanical and hydraulic properties of soils. A revised soil classification system (RSCS) for coarse-fine mixtures is proposed herein. Definitions of classification boundaries use low and high void ratios that gravel, sand, and fines may attain. This research adopts emax and emin for gravels and sands, and three distinctive void ratio values for fines: soft eF|10  kPa and stiff eF|1  MPa for mechanical response (at effective stress 10 kPa and 1 MPa, respectively), and viscous λ⋅eF|LL for fluid flow control, where λ=2log(LL−25) and eF|LL is the void ratio at the liquid limit. For classification purposes, these void ratios can be estimated from index properties such as particle shape, the coefficient of uniformity, and the liquid limit. Analytically computed and data-adjusted boundaries are soil-specific, in contrast with the Unified Soil Classification System (USCS). Threshold fractions for mechanical control and for flow control are quite distinct in the proposed system. Therefore, the RSCS uses a two-name nomenclature whereby the first letters identify the component(s) that controls mechanical properties, followed by a letter (shown in parenthesis) that identifies the component that controls fluid flow. Sample charts in this paper and a Microsoft Excel facilitate the implementation of this revised classification system.

  8. Double fine structure in the cluster radioactivity of 252Cf

    International Nuclear Information System (INIS)

    Dumitrescu, O.; Bulboaca, I.; Carstoiu, F.; Sandulescu, A.

    1995-07-01

    Within the one level R - matrix approach the relative intensities in the double fine structure of several radioactive decays of 252 Cf → 146 Ba + 106 Mo fission channel are calculated and compared with the experimental data. The internal wave functions are supposed to be given by the Wigner D -functions. The relative motion wave functions are calculated from a nucleus -nucleus double - folding model potential obtained with the M3Y interaction. (author). 83 refs, 3 figs

  9. 26 CFR 1.162-21 - Fines and penalties.

    Science.gov (United States)

    2010-04-01

    ... (including damages under section 4A of the Clayton Act (15 U.S.C. 15a), as amended) paid to a government do... and was fined $50,000. The United States sued M Corp. under section 4A of the Clayton Act (15 U.S.C... chapter 68 of the Internal Revenue Code of 1954; (iii) Paid in settlement of the taxpayer's actual or...

  10. Potential Applications of Peroxidases in the Fine Chemical Industries

    Science.gov (United States)

    Casella, Luigi; Monzani, Enrico; Nicolis, Stefania

    A description of selected types of reactions catalyzed by heme peroxidases is given. In particular, the discussion is focused mainly on those of potential interest for fine chemical synthesis. The division into subsections has been done fromthe point of view of the enzyme action, i.e., giving emphasis to themechanismof the enzymatic reaction, and from that of the substrate, i.e., analyzing the type of transformation promoted by the enzyme. These two approaches have several points in common.

  11. Processing a fine slit by means of electric discharge

    International Nuclear Information System (INIS)

    Kasahara, S.; Inoue, H.; Hongo, T.

    1979-03-01

    Among fabrication methods using electricity, the electric discharge processing is widely used for fabrication of forms and dies. If one notes however features proper to the electric discharge processors and minds their effective utilization, it is possible to fabricate pieces of very special shapes or of high precision as such. This paper reports on our trial to process a fine slit by means of electric discharge, whose fabrication is impossible by the conventional methods. (author)

  12. Fine-grained recognition of plants from images

    OpenAIRE

    Šulc, Milan; Matas, Jiří

    2017-01-01

    Background Fine-grained recognition of plants from images is a challenging computer vision task, due to the diverse appearance and complex structure of plants, high intra-class variability and small inter-class differences. We review the state-of-the-art and discuss plant recognition tasks, from identification of plants from specific plant organs to general plant recognition “in the wild”. Results We propose texture analysis and deep learning methods for different plant recognition tasks. The...

  13. Constructions of Professional Subjectivity at the Fine Arts College

    OpenAIRE

    Lindström, Sofia

    2015-01-01

    Higher education can function as an important marker of seriousness in fields characterized by diffuse professional standards. Using the case of a fine arts institute, the article outlines the role of higher education in promoting the interconnection of a professional and individual subjectivity; being an artist is not merely something one does but something one is. By primarily examining interview material, it explores how an ideal position of individual self-reliance relates to the alumni o...

  14. Calibration of the CHARM fine-grained calorimeter

    International Nuclear Information System (INIS)

    Dorenbosch, J.; Udo, F.; Allaby, J.V.; Amaldi, U.; Barbiellini, G.; Bergsma, F.; Capone, A.; Flegel, W.; Lanceri, L.; Metcalf, M.; Nieuwenhuis, C.; Panman, J.; Santoni, C.; Winter, K.; Abt, I.; Aspiazu, J.; Buengener, A.; Buesser, F.W.; Daumann, H.; Gall, P.D.; Hebbeker, T.; Niebergall, F.; Schuett, P.; Staehelin, P.; Baroncelli, A.; Bosio, C.; Tortora, L.; Barone, L.; Borgia, B.; Diemoz, M.; Dore, U.; Ferroni, F.; Longo, E.; Luminari, L.; Monacelli, P.; Morganti, S.; De Notaristefani, F.; Valente, V.

    1987-01-01

    Calorimeters have been used extensively for the study of neutrino interactions in the last decade. This paper describes the need for calibration of such calorimeters and how this was realized for the case of the CHARM fine-grained calorimeter. The energy and spatial response of the calorimeter to both hadronic and electromagnetic showers was measured in π and electron beams from 5 to 140 GeV. The results and resolutions are presented. (orig.)

  15. Fine-particle characterization — An important recycling tool

    Science.gov (United States)

    Lindblom, Bo; Samuelsson, Caisa; Sandström, Åke; Ye, Guozhu

    2002-12-01

    This paper summarizes the results from different research projects on fine-particle characterization of metallurgical residues, such as hydroxide sludge, electric-arc furnace dust, and copper-converter dust. These studies demonstrated that characterization is essential for developing new recycling strategies. The basic knowledge of the chemical and physical properties of the residues obtained by the characterizations also provides necessary information on potential problems that could be encountered during the processing of such materials.

  16. Dewatering of coal fines using a super absorbent polymer

    Energy Technology Data Exchange (ETDEWEB)

    Peer, F.; Venter, T. [Sasol Technology for Research & Development, Sasolburg (South Africa)

    2003-08-01

    In most coal preparation processes, water is a necessary medium, but the presence of water in coal after it has been cleaned has a negative impact on transportation costs, handling and specific energy values. The concept of utilizing super absorbent polymers (SAP) was investigated for the purposes of dewatering coal and other fines, generated by preparation processes such as flotation. SAPs are granular highly cross-linked synthetic copolymers with excellent water-absorbing properties. The dewatering process is characterized by three main stages: (a) contact of super absorbent polymer with high-moisture fine coal; (b) separation of dewatered fine coal from super absorbent polymer; and (c) regeneration of used super absorbent polymer, by exploiting its response to changes in conditions such as pH or temperature. The novel idea of encasing a given amount of polymer in a water permeable cloth solved the problem of separating the swollen polymer from the dewatered coal. Preliminary tests investigating the effectiveness of the sachets of polymer showed a drastic decrease in the moisture contents of slurries. Furthermore, it was shown that it was possible to regenerate the polymer (still within the sachets) through thermal drying. A full-scale experimental programme was then followed to accurately determine the feasibility of using sachets of SAP. Thermal regeneration at 70{sup o}C seemed to work successfully. Although the cost of using thermal energy is still a problem, the safety aspect (fire hazards) has been addressed since the polymer does not ignite when heated, unlike fine coal particles that may do so. The alternative method of regeneration, which exploits the pH-sensitivity of the polymer, was less successful, and further work needs to be conducted.

  17. Alleviating Merge Conflicts with Fine-grained Visual Awareness

    OpenAIRE

    Levin, Stanislav; Yehudai, Amiram

    2015-01-01

    Merge conflicts created by software team members working on the same code can be costly to resolve, and adversely affect productivity. In this work, we suggest the approach of fine-grained merge conflict awareness, where software team members are notified of potential merge conflicts via graphical decoration of the relevant semantic elements, in near real-time. The novelty of this approach is that it allows software developers to pinpoint the element in conflict, such as a method's body, para...

  18. Catalytic upgrading of butyric acid towards fine chemicals and biofuels.

    Science.gov (United States)

    Sjöblom, Magnus; Matsakas, Leonidas; Christakopoulos, Paul; Rova, Ulrika

    2016-04-01

    Fermentation-based production of butyric acid is robust and efficient. Modern catalytic technologies make it possible to convert butyric acid to important fine chemicals and biofuels. Here, current chemocatalytic and biocatalytic conversion methods are reviewed with a focus on upgrading butyric acid to 1-butanol or butyl-butyrate. Supported Ruthenium- and Platinum-based catalyst and lipase exhibit important activities which can pave the way for more sustainable process concepts for the production of green fuels and chemicals. © FEMS 2016.

  19. MRL and SuperFine+MRL: new supertree methods

    Science.gov (United States)

    2012-01-01

    Background Supertree methods combine trees on subsets of the full taxon set together to produce a tree on the entire set of taxa. Of the many supertree methods, the most popular is MRP (Matrix Representation with Parsimony), a method that operates by first encoding the input set of source trees by a large matrix (the "MRP matrix") over {0,1, ?}, and then running maximum parsimony heuristics on the MRP matrix. Experimental studies evaluating MRP in comparison to other supertree methods have established that for large datasets, MRP generally produces trees of equal or greater accuracy than other methods, and can run on larger datasets. A recent development in supertree methods is SuperFine+MRP, a method that combines MRP with a divide-and-conquer approach, and produces more accurate trees in less time than MRP. In this paper we consider a new approach for supertree estimation, called MRL (Matrix Representation with Likelihood). MRL begins with the same MRP matrix, but then analyzes the MRP matrix using heuristics (such as RAxML) for 2-state Maximum Likelihood. Results We compared MRP and SuperFine+MRP with MRL and SuperFine+MRL on simulated and biological datasets. We examined the MRP and MRL scores of each method on a wide range of datasets, as well as the resulting topological accuracy of the trees. Our experimental results show that MRL, coupled with a very good ML heuristic such as RAxML, produced more accurate trees than MRP, and MRL scores were more strongly correlated with topological accuracy than MRP scores. Conclusions SuperFine+MRP, when based upon a good MP heuristic, such as TNT, produces among the best scores for both MRP and MRL, and is generally faster and more topologically accurate than other supertree methods we tested. PMID:22280525

  20. Catalytic upgrading of butyric acid towards fine chemicals and biofuels

    OpenAIRE

    Sj?blom, Magnus; Matsakas, Leonidas; Christakopoulos, Paul; Rova, Ulrika

    2016-01-01

    Fermentation-based production of butyric acid is robust and efficient. Modern catalytic technologies make it possible to convert butyric acid to important fine chemicals and biofuels. Here, current chemocatalytic and biocatalytic conversion methods are reviewed with a focus on upgrading butyric acid to 1-butanol or butyl-butyrate. Supported Ruthenium- and Platinum-based catalyst and lipase exhibit important activities which can pave the way for more sustainable process concepts for the produc...

  1. Weldability investigation of fine-grained S1100QL steel

    Directory of Open Access Journals (Sweden)

    I. Samardžić

    2016-07-01

    Full Text Available This paper presents the results of weldability investigation on welded joints made of fine - grained high-strength S1100QL steel. The investigations are performed on two welded plates by HV 10 hardness measuring and by Charpy V notch testing at different test temperatures. Mechanical properties of welded joints are overviewed, along with welded parameters, all of which enable obtaining of high-quality welded joints.

  2. Basic genetics for dermatologists

    Directory of Open Access Journals (Sweden)

    Muthu Sendhil Kumaran

    2013-01-01

    Full Text Available During the past few decades, advances in the field of molecular genetics have enriched us in understanding the pathogenesis of diseases, their identification, and appropriate therapeutic interventions. In the last 20 years, genetic basis of more than 350 monogenic skin diseases have been elucidated and is counting. The widespread use of molecular genetics as a tool in diagnosis is not practiced routinely due to genetic heterogenicity, limited access and low sensitivity. In this review, we have presented the very basics of genetics so as to enable dermatologists to have working understanding of medical genetics.

  3. Radiological and microanalytical studies of fine Melnik wines

    International Nuclear Information System (INIS)

    Tonev, Dimiter; Geleva, Elena; Damianova, Anna; Grigorov, Todor; Goutev, Nikolai; Protohristov, Hristo; Stoyanov, Chavdar; Bashev, Vladimir; Popov, Evgeni; Tringovska, Ivanka; Kostova, Dimitrina

    2016-01-01

    Nuclear methods and chemical fingerprinting can help in the process of determination of the year of production (vintage) and the geographical provenance or designation of origin of high quality wines. For the first time we report results obtained for fine Bulgarian wines from Melnik region, as well as, vineyard soil, vine stems and grape leaves. The gamma-ray activity of the radioisotope 137 Cs has been measured also for the first time in wines from different vintages using low background, high resolution gamma-ray spectrometry. The specific concentrations of 16 elements have been measured in samples from soil, vine stems, grape leaves and fine wines from the type Shiroka Melnishka, which are grown in typical Melnik vineyard by means of Inductively Coupled Plasma-Optical Emission Spectrometry (ICP-OES). The obtained radiological and chemical correlations can be used as initial data base in order to determinate the wine vintage back to 1986 and, eventually, as tool to establish the designation of origin of the Melnik fine wine and the quality of the wine

  4. Measuring the gypsum content of C&D debris fines.

    Science.gov (United States)

    Musson, Stephen E; Xu, Qiyong; Townsend, Timothy G

    2008-11-01

    Construction and demolition (C&D) debris recycling facilities often produce a screened material intended for use as alternative daily cover (ADC) at active landfills or for shaping and grading at closed landfills. This product contains soil and small pieces of wood, concrete, gypsum drywall, shingles and other components of C&D debris. Concerns have been raised over the contribution of gypsum drywall in C&D debris fines to odor problems at landfills where the product is used. To address such concerns, limitations may be placed on the percentage of gypsum (or sulfate) that can occur, and standardized testing procedures are required to permit valid compliance testing. A test procedure was developed for measuring the gypsum content in C&D debris fines. The concentration of sulfate leached in an aqueous solution was used to estimate the initial gypsum content of the sample. The impact of sample size and leaching time were evaluated. Precision and accuracy increased with increasing gypsum content. Results from replicate samples had an average relative standard deviation of 9%. The gypsum content of fines obtained from different facilities in the US varied widely from 1% to over 25%. These variations not only occurred between differing facilities, but within batches produced within a single facility.

  5. Analysis of Thomsen parameters for finely layered VTI media

    International Nuclear Information System (INIS)

    Berryman, J.G.; Berge, P.A.

    1997-01-01

    The range of Thomsen's anisotropy parameters ε and δ for vertical transversely isotropic (VTI) media when the anisotropy is due to fine layering of isotropic elas-tic materials is considered. We show that ε lies in the range -3/8 ≤ ε ≤ 1/2 v p 2 > p-2 >-1 for finely layered media having constant density; smaller positive and all negative values of ε occur for media with large fluctuations in the Lamacute e parameter λ We show that sign(δ) = sign ( p -2 > - s -2 > s 2 /v p 2 >) for constant density media, so δ can be either positive or negative. Among all theoretically possible random media, posi-tive and negative δ are equally likely in finely layered media limited to two types of constituent layers. Lay-ered media having large fluctuations in Lamacute e λ are the ones most likely to have positive δ. Since Gassmann's results for fluid-saturated porous media show that the effects of fluids influence only the λ Lamacute e constant, not the shear modulus μ, these results suggest that positive δ occurring together with positive but small ε may be indicative of changing fluid content in layered earth

  6. A closed-loop neurobotic system for fine touch sensing

    Science.gov (United States)

    Bologna, L. L.; Pinoteau, J.; Passot, J.-B.; Garrido, J. A.; Vogel, J.; Ros Vidal, E.; Arleo, A.

    2013-08-01

    Objective. Fine touch sensing relies on peripheral-to-central neurotransmission of somesthetic percepts, as well as on active motion policies shaping tactile exploration. This paper presents a novel neuroengineering framework for robotic applications based on the multistage processing of fine tactile information in the closed action-perception loop. Approach. The integrated system modules focus on (i) neural coding principles of spatiotemporal spiking patterns at the periphery of the somatosensory pathway, (ii) probabilistic decoding mechanisms mediating cortical-like tactile recognition and (iii) decision-making and low-level motor adaptation underlying active touch sensing. We probed the resulting neural architecture through a Braille reading task. Main results. Our results on the peripheral encoding of primary contact features are consistent with experimental data on human slow-adapting type I mechanoreceptors. They also suggest second-order processing by cuneate neurons may resolve perceptual ambiguities, contributing to a fast and highly performing online discrimination of Braille inputs by a downstream probabilistic decoder. The implemented multilevel adaptive control provides robustness to motion inaccuracy, while making the number of finger accelerations covariate with Braille character complexity. The resulting modulation of fingertip kinematics is coherent with that observed in human Braille readers. Significance. This work provides a basis for the design and implementation of modular neuromimetic systems for fine touch discrimination in robotics.

  7. Blasted copper slag as fine aggregate in Portland cement concrete.

    Science.gov (United States)

    Dos Anjos, M A G; Sales, A T C; Andrade, N

    2017-07-01

    The present work focuses on assessing the viability of applying blasted copper slag, produced during abrasive blasting, as fine aggregate for Portland cement concrete manufacturing, resulting in an alternative and safe disposal method. Leaching assays showed no toxicity for this material. Concrete mixtures were produced, with high aggregate replacement ratios, varying from 0% to 100%. Axial compressive strength, diametrical compressive strength, elastic modulus, physical indexes and durability were evaluated. Assays showed a significant improvement in workability, with the increase in substitution of fine aggregate. With 80% of replacement, the concrete presented lower levels of water absorption capacity. Axial compressive strength and diametrical compressive strength decreased, with the increase of residue replacement content. The greatest reductions of compressive strength were found when the replacement was over 40%. For tensile strength by diametrical compression, the greatest reduction occurred for the concrete with 80% of replacement. After the accelerated aging, results of mechanic properties showed a small reduction of the concrete with blasted copper slag performance, when compared with the reference mixture. Results indicated that the blasted copper slag is a technically viable material for application as fine aggregate for concrete mixtures. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Effect of Filament Fineness on Composite Yarn Residual Torque

    Directory of Open Access Journals (Sweden)

    Sarıoğlu Esin

    2018-03-01

    Full Text Available Yarn residual torque or twist liveliness occurs when the twist is imparted to spin the fibers during yarn formation. It causes yarn snarling, which is an undesirable property and can lead the problems for further processes such as weaving and knitting. It affects the spirality of knitted fabrics and skewness of woven fabrics. Generally, yarn residual torque depends on yarn twist, yarn linear density, and fiber properties used. Composite yarns are widely produced to exploit two yarns with different properties such on optimum way at the same time and these yarns can be produced by wrapping sheath fibers around filament core fiber with a certain twist. In this study, the effect of filament fineness used as core component of composite yarn on residual torque was analyzed. Thus, the false twist textured polyester filament yarns with different filament fineness were used to produce composite yarns with different yarn count. The variance analysis was performed to determine the significance of twist liveliness of filament yarns and yarn count on yarn twist liveliness. Results showed that there is a statistically significant differences at significance level of α=0.05 between filament fineness and yarn residual torque of composite yarns.

  9. Feature Importance in Nonlinear Embeddings (FINE): Applications in Digital Pathology.

    Science.gov (United States)

    Ginsburg, Shoshana B; Lee, George; Ali, Sahirzeeshan; Madabhushi, Anant

    2016-01-01

    Quantitative histomorphometry (QH) refers to the process of computationally modeling disease appearance on digital pathology images by extracting hundreds of image features and using them to predict disease presence or outcome. Since constructing a robust and interpretable classifier is challenging in a high dimensional feature space, dimensionality reduction (DR) is often implemented prior to classifier construction. However, when DR is performed it can be challenging to quantify the contribution of each of the original features to the final classification result. We have previously presented a method for scoring features based on their importance for classification on an embedding derived via principal components analysis (PCA). However, nonlinear DR involves the eigen-decomposition of a kernel matrix rather than the data itself, compounding the issue of classifier interpretability. In this paper we present feature importance in nonlinear embeddings (FINE), an extension of our PCA-based feature scoring method to kernel PCA (KPCA), as well as several NLDR algorithms that can be cast as variants of KPCA. FINE is applied to four digital pathology datasets to identify key QH features for predicting the risk of breast and prostate cancer recurrence. Measures of nuclear and glandular architecture and clusteredness were found to play an important role in predicting the likelihood of recurrence of both breast and prostate cancers. Compared to the t-test, Fisher score, and Gini index, FINE was able to identify a stable set of features that provide good classification accuracy on four publicly available datasets from the NIPS 2003 Feature Selection Challenge.

  10. Source contributions to atmospheric fine carbon particle concentrations

    Science.gov (United States)

    Andrew Gray, H.; Cass, Glen R.

    A Lagrangian particle-in-cell air quality model has been developed that facilitates the study of source contributions to atmospheric fine elemental carbon and fine primary total carbon particle concentrations. Model performance was tested using spatially and temporally resolved emissions and air quality data gathered for this purpose in the Los Angeles area for the year 1982. It was shown that black elemental carbon (EC) particle concentrations in that city were dominated by emissions from diesel engines including both on-highway and off-highway applications. Fine primary total carbon particle concentrations (TC=EC+organic carbon) resulted from the accumulation of small increments from a great variety of emission source types including both gasoline and diesel powered highway vehicles, stationary source fuel oil and gas combustion, industrial processes, paved road dust, fireplaces, cigarettes and food cooking (e.g. charbroilers). Strategies for black elemental carbon particle concentration control will of necessity need to focus on diesel engines, while controls directed at total carbon particle concentrations will have to be diversified over a great many source types.

  11. Genetic engineering compared to natural genetic variations.

    Science.gov (United States)

    Arber, Werner

    2010-11-30

    By comparing strategies of genetic alterations introduced in genetic engineering with spontaneously occurring genetic variation, we have come to conclude that both processes depend on several distinct and specific molecular mechanisms. These mechanisms can be attributed, with regard to their evolutionary impact, to three different strategies of genetic variation. These are local nucleotide sequence changes, intragenomic rearrangement of DNA segments and the acquisition of a foreign DNA segment by horizontal gene transfer. Both the strategies followed in genetic engineering and the amounts of DNA sequences thereby involved are identical to, or at least very comparable with, those involved in natural genetic variation. Therefore, conjectural risks of genetic engineering must be of the same order as those for natural biological evolution and for conventional breeding methods. These risks are known to be quite low. There is no scientific reason to assume special long-term risks for GM crops. For future agricultural developments, a road map is designed that can be expected to lead, by a combination of genetic engineering and conventional plant breeding, to crops that can insure food security and eliminate malnutrition and hunger for the entire human population on our planet. Public-private partnerships should be formed with the mission to reach the set goals in the coming decades. Copyright © 2010 Elsevier B.V. All rights reserved.

  12. 77 FR 76302 - Importer of Controlled Substances; Notice of Application; ISP Freetown Fine Chemicals

    Science.gov (United States)

    2012-12-27

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF JUSTICE Drug Enforcement Administration Importer of Controlled Substances; Notice of Application; ISP Freetown Fine..., 2012, ISP Freetown Fine Chemicals, 238 South Main Street, Assonet, Massachusetts 02702, made...

  13. 77 FR 40910 - Importer of Controlled Substances Notice of Application; ISP Freetown Fine Chemicals

    Science.gov (United States)

    2012-07-11

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF JUSTICE Drug Enforcement Administration Importer of Controlled Substances Notice of Application; ISP Freetown Fine..., ISP Freetown Fine Chemicals, 238 South Main Street, Assonet, Massachusetts 02702, made application by...

  14. Development of new test procedures for measuring fine and coarse aggregates specific gravity.

    Science.gov (United States)

    2009-09-01

    The objective of the research is to develop and evaluate new test methods at determining the specific gravity and absorption of both fine and coarse aggregates. Current methods at determining the specific gravity and absorption of fine and coarse agg...

  15. A FRAMEWORK FOR FINE-SCALE COMPUTATIONAL FLUID DYNAMICS AIR QUALITY MODELING AND ANALYSIS

    Science.gov (United States)

    Fine-scale Computational Fluid Dynamics (CFD) simulation of pollutant concentrations within roadway and building microenvironments is feasible using high performance computing. Unlike currently used regulatory air quality models, fine-scale CFD simulations are able to account rig...

  16. Monitoring Fine Sediment; Grande Ronde and John Day Rivers, 1999 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Rhodes, Jonathan J.; Greene, M. Jonas; Purser, Michael D. (Columbia River Inter-Tribal Fish Commission, Portland, OR)

    2000-01-01

    This project was initiated to monitor surface fine sediment levels and overwinter intrusion of fine sediment in spring chinook salmon spawning habitat in the North Folk John Day and Grande Ronde Rivers, for five years.

  17. Evaluation of fine fescue grasses identifies resources for improved ecological function under rangeland stress environments

    Science.gov (United States)

    Fine-leaved fescue (Festuca ssp.) grasses have potential for contributing to increased rangeland productivity given their comparatively high drought and heat tolerance. Therefore, plant performance trials were developed to evaluate geographically diverse fine fescue materials for their application ...

  18. A quantitative analysis of fine scale distribution of intertidal meiofauna in response to food resources

    Digital Repository Service at National Institute of Oceanography (India)

    Ansari, Z.A.; Gauns, M.

    Fine scale vertical and spatial distribution of meiofauna in relation to food abundance was studied in the intertidal sediment at Dias Beach. The major abiotic factors showed significant changes and progressive fine scale decrease in vertical...

  19. Discovery and Fine-Mapping of Glycaemic and Obesity-Related Trait Loci Using High-Density Imputation.

    Directory of Open Access Journals (Sweden)

    Momoko Horikoshi

    2015-07-01

    Full Text Available Reference panels from the 1000 Genomes (1000G Project Consortium provide near complete coverage of common and low-frequency genetic variation with minor allele frequency ≥0.5% across European ancestry populations. Within the European Network for Genetic and Genomic Epidemiology (ENGAGE Consortium, we have undertaken the first large-scale meta-analysis of genome-wide association studies (GWAS, supplemented by 1000G imputation, for four quantitative glycaemic and obesity-related traits, in up to 87,048 individuals of European ancestry. We identified two loci for body mass index (BMI at genome-wide significance, and two for fasting glucose (FG, none of which has been previously reported in larger meta-analysis efforts to combine GWAS of European ancestry. Through conditional analysis, we also detected multiple distinct signals of association mapping to established loci for waist-hip ratio adjusted for BMI (RSPO3 and FG (GCK and G6PC2. The index variant for one association signal at the G6PC2 locus is a low-frequency coding allele, H177Y, which has recently been demonstrated to have a functional role in glucose regulation. Fine-mapping analyses revealed that the non-coding variants most likely to drive association signals at established and novel loci were enriched for overlap with enhancer elements, which for FG mapped to promoter and transcription factor binding sites in pancreatic islets, in particular. Our study demonstrates that 1000G imputation and genetic fine-mapping of common and low-frequency variant association signals at GWAS loci, integrated with genomic annotation in relevant tissues, can provide insight into the functional and regulatory mechanisms through which their effects on glycaemic and obesity-related traits are mediated.

  20. Genetic Testing for ALS

    Science.gov (United States)

    ... In Your Community Advocate Get Involved Donate Familial Amyotrophic Lateral Sclerosis (FALS) and Genetic Testing By Deborah Hartzfeld, MS, CGC, Certified Genetic Counselor Familial ALS Most of the time ALS is not inherited. ...

  1. Prenatal Genetic Testing Chart

    Science.gov (United States)

    ... Management Education & Events Advocacy For Patients About ACOG Prenatal Genetic Testing Chart (Infographic) Home For Patients Search FAQs Prenatal Genetic Testing Chart (Infographic) PFSI010 ››› Weeks 1–4 ...

  2. Genetics Home Reference: trimethylaminuria

    Science.gov (United States)

    ... life, and career. Some people with trimethylaminuria experience depression and social isolation as a result of ... information about a genetic condition can statistics provide? Why are some genetic conditions more common ...

  3. Regulation of Genetic Tests

    Science.gov (United States)

    ... Links for Patient Care Education All About the Human Genome Project Fact Sheets Genetic Education Resources for Teachers Genomic Careers National DNA Day Online Education Kit Online Genetics Education ... Subjects Research Informed Consent for Genomics Research Intellectual ...

  4. Genetics and Man

    Science.gov (United States)

    Carter, C. O.

    1973-01-01

    Can genetic evolution be controlled by man in a manner which does not violate a civilized, humane, and democratic ethos? The genetics of health and illhealth and of normal variation are discussed with respect to this question. (PEB)

  5. Genetics Home Reference: SADDAN

    Science.gov (United States)

    ... view the expand/collapse boxes. Description SADDAN (severe achondroplasia with developmental delay and acanthosis nigricans) is a ... Genetic Testing (1 link) Genetic Testing Registry: Severe achondroplasia with developmental delay and acanthosis nigricans Other Diagnosis ...

  6. Genetic Science Learning Center

    Science.gov (United States)

    Genetic Science Learning Center Making science and health easy for everyone to understand Home News Our Team What We Do ... Collaboration Conferences Current Projects Publications Contact The Genetic Science Learning Center at The University of Utah is a ...

  7. Prenatal screening and genetics

    DEFF Research Database (Denmark)

    Alderson, P; Aro, A R; Dragonas, T

    2001-01-01

    Although the term 'genetic screening' has been used for decades, this paper discusses how, in its most precise meaning, genetic screening has not yet been widely introduced. 'Prenatal screening' is often confused with 'genetic screening'. As we show, these terms have different meanings, and we...... examine definitions of the relevant concepts in order to illustrate this point. The concepts are i) prenatal, ii) genetic screening, iii) screening, scanning and testing, iv) maternal and foetal tests, v) test techniques and vi) genetic conditions. So far, prenatal screening has little connection...... with precisely defined genetics. There are benefits but also disadvantages in overstating current links between them in the term genetic screening. Policy making and professional and public understandings about screening could be clarified if the distinct meanings of prenatal screening and genetic screening were...

  8. Genetics and the Brain

    Science.gov (United States)

    ... Find us on YouTube Follow us on Instagram Genetics and the Brain by Carl Sherman September 10, ... effects that may be responsible. How Much Is Genetic? [x] , [xi] , [xii] , [xiii] A basic question in ...

  9. Genetically engineered foods

    Science.gov (United States)

    Bioengineered foods; GMOs; Genetically modified foods ... helps speed up the process of creating new foods with desired traits. The possible benefits of genetic engineering include: More nutritious food Tastier food Disease- and ...

  10. Genetic Disease Foundation

    Science.gov (United States)

    ... has partnered with the Department of Genetics and Genomic Sciences at Mount Sinai in New York City, one ... affiliation with Mount Sinai’s Department of Genetics and Genomic Sciences, we can help connect you with world-class ...

  11. Genetic Brain Disorders

    Science.gov (United States)

    A genetic brain disorder is caused by a variation or a mutation in a gene. A variation is a different form ... mutation is a change in a gene. Genetic brain disorders affect the development and function of the ...

  12. Evaluating human genetic diversity

    National Research Council Canada - National Science Library

    This book assesses the scientific value and merit of research on human genetic differences--including a collection of DNA samples that represents the whole of human genetic diversity--and the ethical...

  13. Genetics Home Reference: preeclampsia

    Science.gov (United States)

    ... the mother can cause bleeding in the brain ( hemorrhagic stroke ). The effects of high blood pressure on the ... Diagnostic Tests Drug Therapy Genetic Counseling Palliative Care Surgery and Rehabilitation Related Information How are genetic conditions ...

  14. Comparison of Fine Needle Aspiration and Fine Needle Nonaspiration Cytology of Thyroid Nodules: A Meta-Analysis

    Directory of Open Access Journals (Sweden)

    Hongming Song

    2015-01-01

    Full Text Available Background. Fine needle aspiration cytology (FNAC and fine needle nonaspiration cytology (FNNAC are useful cost-effective techniques for preoperatively assessing thyroid lesions. Both techniques have advantages and disadvantages, and there is controversy over which method is superior. This meta-analysis was performed to evaluate the differences between FNAC and FNNAC for diagnosis of thyroid nodules. Methods. Primary publications were independently collected by two reviewers from PubMed, Web of Science, Google Scholar, EBSCO, OALib, and the Cochrane Library databases. The following search terms were used: fine needle, aspiration, capillary, nonaspiration, sampling without aspiration, thyroid, and cytology. The last search was performed on February 1, 2015. Results. Sixteen studies comprising 1,842 patients and 2,221 samples were included in this study. No statistically significant difference was observed between FNAC and FNNAC groups with respect to diagnostically inadequate smears, diagnostically superior smears, diagnostic performance (accuracy, sensitivity, specificity, negative predictive value, and positive predictive value, area under the summary receiver operating characteristic curve, average score of each parameter (background blood or clot, amount of cellular material, degree of cellular degeneration, degree of cellular trauma, and retention of appropriate architecture, and total score of five parameters. Conclusion. FNAC and FNNAC are equally useful in assessing thyroid nodules.

  15. Calculation procedures to estimate fine root production rates in forests using two-dimensional fine root data obtained by the net sheet method.

    Science.gov (United States)

    Noguchi, Kyotaro; Tanikawa, Toko; Inagaki, Yoshiyuki; Ishizuka, Shigehiro

    2017-06-01

    Several recent studies have used the net sheet method to estimate fine root production rates in forest ecosystems, wherein net sheets are inserted into the soil and fine roots growing through them are observed. Although this method has advantages in terms of its easy handling and low cost, there are uncertainties in the estimates per unit soil volume or unit stand area, because the net sheet is a two-dimensional material. Therefore, this study aimed to establish calculation procedures for estimating fine root production rates from two-dimensional fine root data on net sheets. This study was conducted in a hinoki cypress (Chamaecyparis obtusa (Sieb. & Zucc.) Endl.) stand in western Japan. We estimated fine root production rates in length and volume from the number (RN) and cross-sectional area (RCSA) densities, respectively, for fine roots crossing the net sheets, which were then converted to dry mass values. For these calculations, we used empirical regression equations or theoretical equations between the RN or RCSA densities on the vertical walls of soil pits and fine root densities in length or volume, respectively, in the soil, wherein the theoretical equations assumed random orientation of the growing fine roots. The estimates of mean fine root (diameter root orientation was not random in our study site. In light of these results, we concluded that fine root production rates were successfully estimated from two-dimensional fine root data on the net sheets using these calculation procedures, with the empirical regression equations reflecting fine root orientation in the study site. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  16. Fine root dynamics and trace gas fluxes in two lowland tropical forest soils.

    Science.gov (United States)

    WHENDEE L. SILVER; ANDREW W. THOMPSON; MEGAN E . MCGRODDY; RUTH K. VARNER; JADSON D. DIAS; HUDSON SILVA; CRILL PATRICK M.; MICHAEL KELLER

    2005-01-01

    Fine root dynamics have the potential to contribute significantly to ecosystem-scale biogeochemical cycling, including the production and emission of greenhouse gases. This is particularly true in tropical forests which are often characterized as having large fine root biomass and rapid rates of root production and decomposition. We examined patterns in fine root...

  17. Numerical simulation of fine oil sand tailings drying in test cells

    NARCIS (Netherlands)

    Vardon, P.J.; Nijssen, T.; Yao, Y.; Van Tol, A.F.

    2014-01-01

    As a promising technology in disposal of mature fine tailings (MFT), atmospheric fines drying (AFD) is currently being implemented on a commercial scale at Shell Canada’s Muskeg River Mine near Fort McMurray, Alberta. AFD involves the use of a polymer flocculent to bind fine particles in MFT

  18. Modeling moisture content of fine dead wildland fuels: Input to the BEHAVE fire prediction system

    Science.gov (United States)

    Richard C. Rothermel; Ralph A. Wilson; Glen A. Morris; Stephen S. Sackett

    1986-01-01

    Describes a model for predicting moisture content of fine fuels for use with the BEHAVE fire behavior and fuel modeling system. The model is intended to meet the need for more accurate predictions of fine fuel moisture, particularly in northern conifer stands and on days following rain. The model is based on the Canadian Fine Fuel Moisture Code (FFMC), modified to...

  19. 36 CFR 401.6 - Approval by National Commission of Fine Arts.

    Science.gov (United States)

    2010-07-01

    ... Commission of Fine Arts. 401.6 Section 401.6 Parks, Forests, and Public Property AMERICAN BATTLE MONUMENTS COMMISSION MONUMENTS AND MEMORIALS § 401.6 Approval by National Commission of Fine Arts. A design for a... Commission of Fine Arts before the Commission can accept it. ...

  20. Behavioral genetics and taste

    Directory of Open Access Journals (Sweden)

    Bachmanov Alexander A

    2007-09-01

    Full Text Available Abstract This review focuses on behavioral genetic studies of sweet, umami, bitter and salt taste responses in mammals. Studies involving mouse inbred strain comparisons and genetic analyses, and their impact on elucidation of taste receptors and transduction mechanisms are discussed. Finally, the effect of genetic variation in taste responsiveness on complex traits such as drug intake is considered. Recent advances in development of genomic resources make behavioral genetics a powerful approach for understanding mechanisms of taste.