WorldWideScience

Sample records for chlorophyll fluorescence signals

  1. Tomato seeds maturity detection system based on chlorophyll fluorescence

    Science.gov (United States)

    Li, Cuiling; Wang, Xiu; Meng, Zhijun

    2016-10-01

    Chlorophyll fluorescence intensity can be used as seed maturity and quality evaluation indicator. Chlorophyll fluorescence intensity of seed coats is tested to judge the level of chlorophyll content in seeds, and further to judge the maturity and quality of seeds. This research developed a detection system of tomato seeds maturity based on chlorophyll fluorescence spectrum technology, the system included an excitation light source unit, a fluorescent signal acquisition unit and a data processing unit. The excitation light source unit consisted of two high power LEDs, two radiators and two constant current power supplies, and it was designed to excite chlorophyll fluorescence of tomato seeds. The fluorescent signal acquisition unit was made up of a fluorescence spectrometer, an optical fiber, an optical fiber scaffolds and a narrowband filter. The data processing unit mainly included a computer. Tomato fruits of green ripe stage, discoloration stage, firm ripe stage and full ripe stage were harvested, and their seeds were collected directly. In this research, the developed tomato seeds maturity testing system was used to collect fluorescence spectrums of tomato seeds of different maturities. Principal component analysis (PCA) method was utilized to reduce the dimension of spectral data and extract principal components, and PCA was combined with linear discriminant analysis (LDA) to establish discriminant model of tomato seeds maturity, the discriminant accuracy was greater than 90%. Research results show that using chlorophyll fluorescence spectrum technology is feasible for seeds maturity detection, and the developed tomato seeds maturity testing system has high detection accuracy.

  2. Detecting crop population growth using chlorophyll fluorescence imaging.

    Science.gov (United States)

    Wang, Heng; Qian, Xiangjie; Zhang, Lan; Xu, Sailong; Li, Haifeng; Xia, Xiaojian; Dai, Liankui; Xu, Liang; Yu, Jingquan; Liu, Xu

    2017-12-10

    For both field and greenhouse crops, it is challenging to evaluate their growth information on a large area over a long time. In this work, we developed a chlorophyll fluorescence imaging-based system for crop population growth information detection. Modular design was used to make the system provide high-intensity uniform illumination. This system can perform modulated chlorophyll fluorescence induction kinetics measurement and chlorophyll fluorescence parameter imaging over a large area of up to 45  cm×34  cm. The system can provide different lighting intensity by modulating the duty cycle of its control signal. Results of continuous monitoring of cucumbers in nitrogen deficiency show the system can reduce the judge error of crop physiological status and improve monitoring efficiency. Meanwhile, the system is promising in high throughput application scenarios.

  3. Spectral and physiological information from chlorophyll fluorescence signals in the detection of pine damage

    Energy Technology Data Exchange (ETDEWEB)

    Meinander, O. [Finnish Meteorological Inst., Helsinki (Finland). Air Quality Dept.; Somersalo, S. [Helsinki Univ., Helsinki (Finland). Dept. of Plant Biology

    1995-12-31

    Photosynthesis is often among the first targets of the air pollution stress of plants. As chlorophyll fluorescence is a process competing with photosynthetic electron transport it can be employed to study the potential photosynthetic capacity and to detect damage to the photosynthetic apparatus. Many previous studies have shown that chlorophyll fluorescence can be a powerful tool in the detection of forest damage. In this preliminary study, singular value analysis of the fluorescence induction curves was used together with the traditional way of analyzing fluorescence measurements. The experimental data were collected from ozone and carbon dioxide fumigated Scots pine saplings. (author)

  4. Spectral and physiological information from chlorophyll fluorescence signals in the detection of pine damage

    Energy Technology Data Exchange (ETDEWEB)

    Meinander, O [Finnish Meteorological Inst., Helsinki (Finland). Air Quality Dept.; Somersalo, S [Helsinki Univ., Helsinki (Finland). Dept. of Plant Biology

    1996-12-31

    Photosynthesis is often among the first targets of the air pollution stress of plants. As chlorophyll fluorescence is a process competing with photosynthetic electron transport it can be employed to study the potential photosynthetic capacity and to detect damage to the photosynthetic apparatus. Many previous studies have shown that chlorophyll fluorescence can be a powerful tool in the detection of forest damage. In this preliminary study, singular value analysis of the fluorescence induction curves was used together with the traditional way of analyzing fluorescence measurements. The experimental data were collected from ozone and carbon dioxide fumigated Scots pine saplings. (author)

  5. An overview of remote sensing of chlorophyll fluorescence

    Science.gov (United States)

    Xing, Xiao-Gang; Zhao, Dong-Zhi; Liu, Yu-Guang; Yang, Jian-Hong; Xiu, Peng; Wang, Lin

    2007-03-01

    Besides empirical algorithms with the blue-green ratio, the algorithms based on fluorescence are also important and valid methods for retrieving chlorophyll-a concentration in the ocean waters, especially for Case II waters and the sea with algal blooming. This study reviews the history of initial cognitions, investigations and detailed approaches towards chlorophyll fluorescence, and then introduces the biological mechanism of fluorescence remote sensing and main spectral characteristics such as the positive correlation between fluorescence and chlorophyll concentration, the red shift phenomena. Meanwhile, there exist many influence factors that increase complexity of fluorescence remote sensing, such as fluorescence quantum yield, physiological status of various algae, substances with related optical property in the ocean, atmospheric absorption etc. Based on these cognitions, scientists have found two ways to calculate the amount of fluorescence detected by ocean color sensors: fluorescence line height and reflectance ratio. These two ways are currently the foundation for retrieval of chlorophyl l - a concentration in the ocean. As the in-situ measurements and synchronous satellite data are continuously being accumulated, the fluorescence remote sensing of chlorophyll-a concentration in Case II waters should be recognized more thoroughly and new algorithms could be expected.

  6. Detection of vegetation LUE based on chlorophyll fluorescence separation algorithm from Fraunhofer line

    Science.gov (United States)

    Liu, Liangyun; Zhang, Bing

    2009-09-01

    Photosynthetic efficiency is very important, and not yet generally assessable by remote sensing. Much research has proved the possibility of the separation of solar-induced chlorophyll fluorescence (ChlF) from the reflected hyperspectral data. As the 'probe' of plant photosynthesis, it is possible to detect photosynthetic light use efficiency (LUE) by the separated solar-induced ChlF. A diurnal experiment was carried out on winter wheat on Apr. 18, 2008, and the canopy radiance spectra and leaf LUE data were measured synchronously. The solar-induced chlorophyll fluorescence signals at 760nm and 688nm were separated from the reflected radiance spectral based on Fraunhofer lines in two oxygen absorption bands. The result showed that LUE was negatively correlated to the separated chlorophyll signals. The statistical models for LUE based on the solar-induced chlorophyll fluorescence values at 688 nm and 760 nm bands had correlation coefficients (R2) of 0.64 and 0.78, respectively. In addition, photochemical reflectance index (PRI) was also linked to LUE, and a statistical model for LUE based on PRI has a correlation coefficient (R2) of 0.66. The presented method provides a novel solution for monitoring LUE from remote sensing data.

  7. Evaluation of Chlorophyll Content and Chlorophyll Fluorescence Parameters and Relationships between Chlorophyll a, b and Chlorophyll Content Index under Water Stress in Olea europaea cv. Dezful

    OpenAIRE

    E. Khaleghi; K. Arzani; N. Moallemi; M. Barzegar

    2012-01-01

    This study was conducted to determine effect of water stress on chlorophyll content and chlorophyll fluorescence parameter in young `Dezful- olive trees. Three irrigation regimes (40% ETcrop, 65% ETcrop and 100% ETcrop) were used. After irrigation treatments were applied, some of biochemical parameters including chlorophyll a, b, total chlorophyll, chlorophyll fluorescence and also chlorophyll content index (C.C.I) were measured. Results of Analysis of variance showed that irrigation treatmen...

  8. The effect of storage temperature of cucumber fruit on chlorophyll fluorescence

    Directory of Open Access Journals (Sweden)

    Ryszard Kosson

    2013-12-01

    Full Text Available The effect of three storage temperature levels: 12,5°C, 20°C, and 1,5°C on basic indexes of chlorophyll fluorescence of cucumber fruits was studied. The greenhouse grown cucumber fruits cv. Wiktor F1 were stored in perforated polyethylene bags or without packages. The minimum chlorophyll fluorescence (Fo, maximum chlorophyll fluorescence (Fm, variable chlorophyll fluorescence (Fv and relative variable fluorescence (Fv/Fm of the cucumber peel were measured. Relative variable fluorescence was decTeasing when cucumbers were stored at temperature lower or higher than optimum level. The chlorophyll fluorescence measurements can be helpful for determination of appropriate temperature parameters of cucumber storage.

  9. Chlorophyll fluorescence, photochemical reflective index and normalized difference vegetative index during plant senescence.

    Science.gov (United States)

    Cordon, Gabriela; Lagorio, M Gabriela; Paruelo, José M

    2016-07-20

    The relationship between the Photochemical Reflectance Index (PRI), Normalized Difference Vegetation Index (NDVI) and chlorophyll fluorescence along senescence was investigated in this work. Reflectance and radiance measurements were performed at canopy level in grass species presenting different photosynthetic metabolism: Avena sativa (C3) and Setaria italica (C4), at different stages of the natural senescence process. Sun induced-chlorophyll fluorescence at 760nm (SIF 760 ) and the apparent fluorescence yield (SIF 760 /a, with a=irradiance at time of measurement) were extracted from the radiance spectra of canopies using the Fraunhofer Line Discrimination-method. The photosynthetic parameters derived from Kautsky kinetics and pigment content were also calculated at leaf level. Whilst stand level NDVI patterns were related to changes in the structure of canopies and not in pigment content, stand level PRI patterns suggested changes both in terms of canopy and of pigment content in leaves. Both SIF 760 /a and Φ PSII decreased progressively along senescence in both species. A strong increment in NPQ was evident in A. sativa while in S. italica NPQ values were lower. Our most important finding was that two chlorophyll fluorescence signals, Φ PSII and SIF 760 /a, correlated with the canopy PRI values in the two grasses assessed, even when tissues at different ontogenic stages were present. Even though significant changes occurred in the Total Chlr/Car ratio along senescence in both studied species, significant correlations between PRI and chlorophyll fluorescence signals might indicate the usefulness of this reflectance index as a proxy of photosynthetic RUE, at least under the conditions of this study. The relationships between stand level PRI and the fluorescence estimators (Φ PSII and SIF 760 /a) were positive in both cases. Therefore, an increase in PRI values as in the fluorescence parameters would indicate higher RUE. Copyright © 2016 Elsevier GmbH. All

  10. Instrumentation in Developing Chlorophyll Fluorescence Biosensing: A Review

    Science.gov (United States)

    Fernandez-Jaramillo, Arturo A.; Duarte-Galvan, Carlos; Contreras-Medina, Luis M.; Torres-Pacheco, Irineo; de J. Romero-Troncoso, Rene; Guevara-Gonzalez, Ramon G.; Millan-Almaraz, Jesus R.

    2012-01-01

    Chlorophyll fluorescence can be defined as the red and far-red light emitted by photosynthetic tissue when it is excited by a light source. This is an important phenomenon which permits investigators to obtain important information about the state of health of a photosynthetic sample. This article reviews the current state of the art knowledge regarding the design of new chlorophyll fluorescence sensing systems, providing appropriate information about processes, instrumentation and electronic devices. These types of systems and applications can be created to determine both comfort conditions and current problems within a given subject. The procedure to measure chlorophyll fluorescence is commonly split into two main parts; the first involves chlorophyll excitation, for which there are passive or active methods. The second part of the procedure is to closely measure the chlorophyll fluorescence response with specialized instrumentation systems. Such systems utilize several methods, each with different characteristics regarding to cost, resolution, ease of processing or portability. These methods for the most part include cameras, photodiodes and satellite images. PMID:23112686

  11. Instrumentation in Developing Chlorophyll Fluorescence Biosensing: A Review

    Directory of Open Access Journals (Sweden)

    Jesus R. Millan-Almaraz

    2012-08-01

    Full Text Available Chlorophyll fluorescence can be defined as the red and far-red light emitted by photosynthetic tissue when it is excited by a light source. This is an important phenomenon which permits investigators to obtain important information about the state of health of a photosynthetic sample. This article reviews the current state of the art knowledge regarding the design of new chlorophyll fluorescence sensing systems, providing appropriate information about processes, instrumentation and electronic devices. These types of systems and applications can be created to determine both comfort conditions and current problems within a given subject. The procedure to measure chlorophyll fluorescence is commonly split into two main parts; the first involves chlorophyll excitation, for which there are passive or active methods. The second part of the procedure is to closely measure the chlorophyll fluorescence response with specialized instrumentation systems. Such systems utilize several methods, each with different characteristics regarding to cost, resolution, ease of processing or portability. These methods for the most part include cameras, photodiodes and satellite images.

  12. Responses of sun-induced chlorophyll fluorescence to biological and environmental variations measured with a versatile Fluorescence Auto-Measurement Equipment (FAME)

    Science.gov (United States)

    Gu, L.

    2017-12-01

    In this study, we examine responses of sun-induced chlorophyll fluorescence to biological and environmental variations measured with a versatile Fluorescence Auto-Measurement Equipment (FAME). FAME was developed to automatically and continuously measure chlorophyll fluorescence (F) of a leaf, plant or canopy in both laboratory and field environments, excited by either artificial light source or sunlight. FAME is controlled by a datalogger and allows simultaneous measurements of environmental variables complementary to the F signals. A built-in communication system allows FAME to be remotely monitored and data-downloaded. Radiance and irradiance calibrations can be done online. FAME has been applied in a variety of environments, allowing an investigation of biological and environmental controls on F emission.

  13. Chlorophyll Fluorescence Imaging Uncovers Photosynthetic Fingerprint of Citrus Huanglongbing

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    Haiyan Cen

    2017-08-01

    Full Text Available Huanglongbing (HLB is one of the most destructive diseases of citrus, which has posed a serious threat to the global citrus production. This research was aimed to explore the use of chlorophyll fluorescence imaging combined with feature selection to characterize and detect the HLB disease. Chlorophyll fluorescence images of citrus leaf samples were measured by an in-house chlorophyll fluorescence imaging system. The commonly used chlorophyll fluorescence parameters provided the first screening of HLB disease. To further explore the photosynthetic fingerprint of HLB infected leaves, three feature selection methods combined with the supervised classifiers were employed to identify the unique fluorescence signature of HLB and perform the three-class classification (i.e., healthy, HLB infected, and nutrient deficient leaves. Unlike the commonly used fluorescence parameters, this novel data-driven approach by using the combination of the mean fluorescence parameters and image features gave the best classification performance with the accuracy of 97%, and presented a better interpretation for the spatial heterogeneity of photochemical and non-photochemical components in HLB infected citrus leaves. These results imply the potential of the proposed approach for the citrus HLB disease diagnosis, and also provide a valuable insight for the photosynthetic response to the HLB disease.

  14. Near infrared fluorescent chlorophyll nanoscale liposomes for sentinel lymph node mapping

    Science.gov (United States)

    Fan, Lina; Wu, Qiang; Chu, Maoquan

    2012-01-01

    Background Sentinel lymph node (SLN) mapping using in vivo near infrared fluorescence imaging has attracted great attention during the past few years. Here we report on the early use of poorly water-soluble chlorophyll with near infrared fluorescence extracted from the leaf of Chimonanthus salicifolius, for mouse axillary SLN mapping. Methods and results To improve the water solubility and SLN targeting of the chlorophyll, we encapsulated the chlorophyll in nanoscale liposomes. The liposome-coated chlorophyll nanocomposites obtained were spherical in shape and had an average diameter of 21.7 ± 6.0 nm. The nanocomposites dispersed well in water, and in aqueous suspension they exhibited brighter near infrared fluorescence than chlorophyll alone. After incubation of the nanocomposites with normal liver cells (QSG-7701) and macrophage cells (Ana-1) for no more than 48 hours, there was no obvious reduction in cell viability. When the nanocomposites were injected intradermally into the paw of a mouse, the axillary SLN was found to be strongly fluorescent and was easily visualized in real time without a requirement for surgery. The intensity of the near infrared fluorescence emitted by the SLN was obviously brighter than that emitted by the SLN of another mouse that had been intradermally injected with chlorophyll alone. Conclusion Our data show that the liposome-coated chlorophyll nanocomposites could have great potential for clinical SLN mapping due to their lack of toxicity, bright near infrared fluorescence, and small diameter. PMID:22787402

  15. A model for chlorophyll fluorescence and photosynthesis at leaf scale

    NARCIS (Netherlands)

    Tol, van der C.; Verhoef, W.; Rosema, A.

    2009-01-01

    This paper presents a leaf biochemical model for steady-state chlorophyll fluorescence and photosynthesis of C3 and C4 vegetation. The model is a tool to study the relationship between passively measured steady-state chlorophyll fluorescence and actual photosynthesis, and its evolution during the

  16. Phenotyping of Arabidopsis Drought Stress Response Using Kinetic Chlorophyll Fluorescence and Multicolor Fluorescence Imaging

    Directory of Open Access Journals (Sweden)

    Jieni Yao

    2018-05-01

    Full Text Available Plant responses to drought stress are complex due to various mechanisms of drought avoidance and tolerance to maintain growth. Traditional plant phenotyping methods are labor-intensive, time-consuming, and subjective. Plant phenotyping by integrating kinetic chlorophyll fluorescence with multicolor fluorescence imaging can acquire plant morphological, physiological, and pathological traits related to photosynthesis as well as its secondary metabolites, which will provide a new means to promote the progress of breeding for drought tolerant accessions and gain economic benefit for global agriculture production. Combination of kinetic chlorophyll fluorescence and multicolor fluorescence imaging proved to be efficient for the early detection of drought stress responses in the Arabidopsis ecotype Col-0 and one of its most affected mutants called reduced hyperosmolality-induced [Ca2+]i increase 1. Kinetic chlorophyll fluorescence curves were useful for understanding the drought tolerance mechanism of Arabidopsis. Conventional fluorescence parameters provided qualitative information related to drought stress responses in different genotypes, and the corresponding images showed spatial heterogeneities of drought stress responses within the leaf and the canopy levels. Fluorescence parameters selected by sequential forward selection presented high correlations with physiological traits but not morphological traits. The optimal fluorescence traits combined with the support vector machine resulted in good classification accuracies of 93.3 and 99.1% for classifying the control plants from the drought-stressed ones with 3 and 7 days treatments, respectively. The results demonstrated that the combination of kinetic chlorophyll fluorescence and multicolor fluorescence imaging with the machine learning technique was capable of providing comprehensive information of drought stress effects on the photosynthesis and the secondary metabolisms. It is a promising

  17. Continuous excitation chlorophyll fluorescence parameters: a review for practitioners.

    Science.gov (United States)

    Banks, Jonathan M

    2017-08-01

    This review introduces, defines and critically reviews a number of chlorophyll fluorescence parameters with specific reference to those derived from continuous excitation chlorophyll fluorescence. A number of common issues and criticisms are addressed. The parameters fluorescence origin (F0) and the performance indices (PI) are discussed as examples. This review attempts to unify definitions for the wide range of parameters available for measuring plant vitality, facilitating their calculation and use. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  18. Towards a merged satellite and in situ fluorescence ocean chlorophyll product

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    H. Lavigne

    2012-06-01

    Full Text Available Understanding the ocean carbon cycle requires a precise assessment of phytoplankton biomass in the oceans. In terms of numbers of observations, satellite data represent the largest available data set. However, as they are limited to surface waters, they have to be merged with in situ observations. Amongst the in situ data, fluorescence profiles constitute the greatest data set available, because fluorometers have operated routinely on oceanographic cruises since the 1970s. Nevertheless, fluorescence is only a proxy of the total chlorophyll a concentration and a data calibration is required. Calibration issues are, however, sources of uncertainty, and they have prevented a systematic and wide range exploitation of the fluorescence data set. In particular, very few attempts to standardize the fluorescence databases have been made. Consequently, merged estimations with other data sources (e.g. satellite are lacking.

    We propose a merging method to fill this gap. It consists firstly in adjusting the fluorescence profile to impose a zero chlorophyll a concentration at depth. Secondly, each point of the fluorescence profile is then multiplied by a correction coefficient, which forces the chlorophyll a integrated content measured on the fluorescence profile to be consistent with the concomitant ocean colour observation. The method is close to the approach proposed by Boss et al. (2008 to correct fluorescence data of a profiling float, although important differences do exist. To develop and test our approach, in situ data from three open ocean stations (BATS, HOT and DYFAMED were used. Comparison of the so-called "satellite-corrected" fluorescence profiles with concomitant bottle-derived estimations of chlorophyll a concentration was performed to evaluate the final error (estimated at 31%. Comparison with the Boss et al. (2008 method, using a subset of the DYFAMED data set, demonstrated that the methods have similar

  19. APPLICATION OF MODULATED CHLOROPHYLL FLUORESCENCE AND MODULATED CHLOROPHYLL FLUORESCENCE IMAGING IN STUDYING ENVIRONMENTAL STRESSES EFFECT

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    L. Guidi

    2016-03-01

    Full Text Available Chlorophyll (Chl a fluorescence is a widely used tool to monitor the photosynthetic process in plants subjected to environmental stresses.this review reports the theoretical bases of Chl fluorescence, and the significance of the most important Chl fluorescence parameters. it also reportshow these parameters can be utilised to estimate changes in photosystem ii (PSII photochemistry, linear electron flux and energy dissipationmechanisms. the relation between actual PSII photochemistry and CO2 assimilation is discussed, as is the role of photochemical andnon-photochemical quenching in inducing changes in PSII activity. the application of Chl fluorescence imaging to study heterogeneity on leaflamina is also considered. this review summarises only some of the results obtained by this methodology to study the effects of differentenvironmental stresses, namely water and nutrients availability, pollutants, temperature and salinity.

  20. Impact of petrochemicals on the photosynthesis of Halophila ovalis using chlorophyll fluorescence

    International Nuclear Information System (INIS)

    Ralph, P.J.; Burchett, M.D.

    1998-01-01

    Laboratory-cultured Halophila ovalis showed tolerance to petrochemical exposure up to 1% (w/v) solution of Bass Strait crude oil, an oil dispersant (Corexit 9527) and a mixture of crude oil and dispersant. Quantum yield, as measured by chlorophyll fluorescence, was the most sensitive measure of the photosynthetic processes affected by petrochemical. The results indicated clearly that chlorophyll fluorescence was effective at monitoring the onset and development of stress and recovery of H. ovalis when exposed to crude oil, dispersant and a mixture of the two compounds. Photosynthetic pigment content generally confirmed the chlorophyll fluorescence response; however, several anomalies occurred. (author)

  1. Correlation of electronic carotenoid-chlorophyll interactions and fluorescence quenching with the aggregation of native LHC II and chlorophyll deficient mutants

    International Nuclear Information System (INIS)

    Liao, Pen-Nan; Bode, Stefan; Wilk, Laura; Hafi, Nour; Walla, Peter J.

    2010-01-01

    The aggregation dependent correlation between fluorescence quenching and the electronic carotenoid-chlorophyll interactions, φ Coupling Car S 1 -Chl , as measured by comparing chlorophyll fluorescence observed after two- and one-photon excitation, has been investigated using native LHC II samples as well as mutants lacking Chl 2 and Chl 13. For native LHC II the same linear correlation between φ Coupling Car S 1 -Chl and the fluorescence quenching was observed as previously reported for the pH and Zea-dependent quenching of LHC II . In order to elucidate which carotenoid-chlorophyll pair might dominate this correlation we also investigated the mutants lacking Chl 2 and Chl 13. However, also with these mutants the same linear correlation as for native LHC II was observed. This provides indication that these two chlorophylls play only a minor role for the observed effects. Nevertheless, we also conclude that this does not exclude that their neighboured carotenoids, lutein 1 and neoxanthin, might interact electronically with other chlorophylls close by.

  2. Hyperspectral solar-induced chlorophyll fluorescence of urban tree leaves: Analyses and applications

    Science.gov (United States)

    Van Wittenberghe, Shari

    Solar energy is the primary energy source for life on Earth which is converted into chemical energy through photosynthesis by plants, algae and cyanobacteria, releasing fuel for the organisms' activities. To dissipate excess of absorbed light energy, plants emit chlorophyll (Chl) fluorescence (650-850 nm) from the same location where photosynthesis takes place. Hence, it provides information on the efficiency of primary energy conversion. From this knowledge, many applications on vegetation and crop stress monitoring could be developed, a necessity for our planet under threat of a changing global climate. Even though the Chl fluorescence signal is weak against the intense reflected radiation background, methods for retrieving the solar-induced Chl fluorescence have been refined over the last years, both at leaf and airborne scale. However, a lack of studies on solar-induced Chl fluorescence gives difficulties for the interpretation of the signal. Within this thesis, hyperspectral upward and downward solar-induced Chl fluorescence is measured at leaf level. Fluorescence yield (FY) is calculated as well as different ratios characterizing the emitted Chl fluorescence shape. The research in this PhD dissertation illustrates the influence of several factors on the solar-induced Chl fluorescence signal. For instance, both the intensity of FY and its spectral shape of urban tree leaves are able to change under influence of stress factors such as traffic air pollution. This shows how solar-induced Chl fluorescence could function as an early stress indicator for vegetation. Further, it is shown that the signal contains information on the ultrastructure of the photosynthetic apparatus. Also, it is proven that the leaf anatomical structure and related light scattering properties play a role in the partitioning between upward and downward Chl fluorescence emission. All these findings indicate how the Chl fluorescence spectrum is influenced by factors which also influence

  3. Movement influences carambola leaflet chlorophyll fluorescence and temperature under sunny conditions

    International Nuclear Information System (INIS)

    Marler, T.E.; Lawton, P.D.

    1995-01-01

    Leaflets of 'Arkin', 'B-10', 'Kary', and 'Sri Kembangan' carambola (Averrhoa carambola L.) trees were restrained in a horizontal position for 3.5 h during midday under full sun conditions to determine the influence of overriding natural leaflet movement on adaxial chlorophyll fluorescence and temperature. Induced chlorophyll fluorescence obtained after 30 minutes of dark adaptation following the period of full sun exposure was affected by leaflet movement. Restrained leaflets exhibited a variable fluorescence (Fv)/peak fluorescence (Fm) of 0.48, while that of unrestrained leaflets was 0.65. Adaxial leaflet temperature of restrained leaflets was 6C higher than that of leaflets that were allowed to move. The influence of leaflet movement on temperature or chlorophyll fluorescence was not different among the four cultivars. However, mean Fv/Fm of 'Kary' and 'Sri Kembangan' was lower than that of 'B-10'. Our results indicate that the ability of carambola to change leaflet angle leads to lower temperature and higher photochemical efficiency than occurs when leaflets are not allowed to move naturally (vertically orient) under full sun conditions

  4. Mahalanobis distance screening of Arabidopsis mutants with chlorophyll fluorescence

    Czech Academy of Sciences Publication Activity Database

    Codrea, C. C.; Hakala-Yatkin, M.; Karlund-Marttila, A.; Nedbal, Ladislav; Aittokallio, T.; Nevalainen, O. S.; Tyystjärvi, E.

    2010-01-01

    Roč. 105, č. 3 (2010), s. 273-283 ISSN 0166-8595 Institutional research plan: CEZ:AV0Z60870520 Keywords : arabidopsis thaliana * chlorophyll fluorescence * fluorescence imaging * mutant detection * outlier detection Subject RIV: EH - Ecology, Behaviour Impact factor: 2.410, year: 2010 http://www.springerlink.com/content/x3586512462pn006/

  5. DAYTIME VARIATIONS OF CHLOROPHYLL A FLUORESCENCE IN PAU D'ALHO SEEDLINGS

    OpenAIRE

    Bacarin, Marcos Antonio; Martinazzo, Emanuela Garbin; Cassol, Daniela; Falqueto, Antelmo Ralph; Silva, Diolina Moura

    2016-01-01

    ABSTRACT Analysis of transient and modulated fluorescence of chlorophyll a were made at one-hour intervals during an eight-hour period starting at 07:30h aiming to study mechanisms of photoprotection against high radiation and temperature in Gallesia integrifolia plants. Seeds were germinated inside plastic pots containing soil as substrate. At 120 days after emergence, chlorophyll fluorescence measurements were performed using Handy-PEA and FMS2 fluorometers. During the course of a day, an i...

  6. Test and Control System for Chlorophyll Fluorescence Parameters Using LED as Excitation Source

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    Zou Qiuying

    2014-05-01

    Full Text Available A new scheme on test and control system for chlorophyll fluorescence is presented in this work, which uses light-emitting diode (LED excitation by means of measuring the fluorescence parameter fpsII. The system takes programmable power supply as LEDs illumination drive power with high sensitivity and signal-to-noise ratio. MINIPAM is used to measure fluorescence parameter fpsII and keeps communication with upper PC by serial port. The upper PC can control the power supply and process the data received from MINIPAM by software which is programmed in VB6. The results show that the system has a lot of advantages such as high accuracy and convenience. The effect of environmental factors on fluorescence parameters is analyzed comprehensively. It will be a practical measurement and control system for photosynthetic ability and have wide application foreground.

  7. Water deficit and salt stress diagnosis through LED induced chlorophyll fluorescence analysis in Jatropha curcas L. oil plants for biodiesel

    Science.gov (United States)

    Gouveia-Neto, Artur S.; Silva, Elias A., Jr.; Oliveira, Ronaldo A.; Cunha, Patrícia C.; Costa, Ernande B.; Câmara, Terezinha J. R.; Willadino, Lilia G.

    2011-02-01

    Light-emitting-diode induced chlorophyll fluorescence analysis is employed to investigate the effect of water and salt stress upon the growth process of physicnut(jatropha curcas) grain oil plants for biofuel. Red(Fr) and far-red (FFr) chlorophyll fluorescence emission signals around 685 nm and 735 nm, respectively, were observed and examined as a function of the stress intensity(salt concentration and water deficit) for a period of time of 30 days. The chlorophyll fluorescence(ChlF) ratio Fr/FFr which is a valuable nondestructive and nonintrusive indicator of the chlorophyll content of leaves was exploited to monitor the level of stress experienced by the jatropha plants. The ChlF technique data indicated that salinity plays a minor role in the chlorophyll concentration of leaves tissues for NaCl concentrations in the 25 to 200 mM range, and results agreed quite well with those obtained using conventional destructive spectrophotometric methods. Nevertheless, for higher NaCl concentrations a noticeable decrease in the Chl content was observed. The Chl fluorescence ratio analysis also permitted detection of damage caused by water deficit in the early stages of the plants growing process. A significant variation of the Fr/FFr ratio was observed sample in the first 10 days of the experiment when one compared control and nonwatered samples. The results suggest that the technique may potentially be applied as an early-warning indicator of stress caused by water deficit.

  8. Salt stress change chlorophyll fluorescence in mango

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    Cicero Cartaxo de Lucena

    2012-12-01

    Full Text Available This study evaluated the tolerance of mango cultivars 'Haden', 'Palmer', 'Tommy Atkins' and 'Uba' grafted on rootstock 'Imbú' to salt stress using chlorophyll fluorescence. Plants were grown in modified Hoagland solution containing 0, 15, 30, and 45 mmol L-1 NaCl. At 97 days the parameters of the chlorophyll fluorescence (F0, Fm, Fv, F0/Fm, Fv/Fm, Fv'/Fm', ΦPSII = [(Fm'-Fs/(Fm'], D = (1- Fv'/Fm' and ETR = (ΦPSII×PPF×0,84×0,5 were determined. At 100 days, the leaf emission and leaf area, toxicity and leaf abscission indexes were determined. In all cultivars evaluated, in different degree, there were decreases in photochemical efficiency of photosystem II, enhanced concentrations from 15 mmol L-1 NaCl. The decreases in the potential quantum yield of photosystem II (Fv/Fm were 27.9, 18.7, 20.5, and 27.4%, for cultivars 'Haden', 'Palmer', 'Tommy Atkins', and 'Uba', respectively, when grown in 45 mmol L-1 NaCl. It was found decreases in leaf emission and mean leaf area in all cultivars from 15 mmol L-1 NaCl. There were increases in leaf toxicity of 33.0, 67.5, 41.6 and 80.8% and in leaf abscission of 71.8, 29.2, 32.5, and 67.9% for the cultivars 'Haden', 'Palmer', 'Tommy Atkins', and 'Uba' respectively, when grown in 45 mmol L-1 NaCl. Leaf toxicity and leaf abscission were not observed in 15 mmol L-1 NaCl. The decrease in Fv/Fm ratio were accompanied by decreasing in leaf emission and increased leaf toxicity index, showing, therefore, the potential of chlorophyll fluorescence in the early detection of salt stress in mango tree.

  9. Chlorophyll fluorescence lifetime imaging provides new insight into the chlorosis induced by plant virus infection.

    Science.gov (United States)

    Lei, Rong; Jiang, Hongshan; Hu, Fan; Yan, Jin; Zhu, Shuifang

    2017-02-01

    Leaf chlorosis induced by plant virus infection has a short fluorescence lifetime, which reflects damaged photosynthetic complexes and degraded chloroplasts. Plant viruses often induce chlorosis and necrosis, which are intimately related to photosynthetic functions. Chlorophyll fluorescence lifetime measurement is a valuable noninvasive tool for analyzing photosynthetic processes and is a sensitive indicator of the environment surrounding the fluorescent molecules. In this study, our central goal was to explore the effect of viral infection on photosynthesis by employing chlorophyll fluorescence lifetime imaging (FLIM), steady-state fluorescence, non-photochemical quenching (NPQ), transmission electron microscopy (TEM), and pigment analysis. The data indicated that the chlorophyll fluorescence lifetime of chlorotic leaves was significantly shorter than that of healthy control leaves, and the fitted short lifetime component of chlorophyll fluorescence of chlorotic leaves was dominant. This dominant short lifetime component may result from damage to the structure of thylakoid, which was confirmed by TEM. The NPQ value of chlorotic leaves was slightly higher than that of healthy green leaves, which can be explained by increased neoxanthin, lutein and violaxanthin content relative to chlorophyll a. The difference in NPQ is slight, but FLIM can provide simple and direct characterization of PSII structure and photosynthetic function. Therefore, this technique shows great potential as a simple and rapid method for studying mechanisms of plant virus infection.

  10. Chlorophyll bleaching by UV-irradiation in vitro and in situ: Absorption and fluorescence studies

    International Nuclear Information System (INIS)

    Zvezdanovic, Jelena; Cvetic, Tijana; Veljovic-Jovanovic, Sonja; Markovic, Dejan

    2009-01-01

    Chlorophyll bleaching by UV-irradiation has been studied by absorbance and fluorescence spectroscopy in extracts containing mixtures of photosynthetic pigments, in acetone and n-hexane solutions, and in aqueous thylakoid suspensions. Chlorophyll undergoes destruction (bleaching) accompanied by fluorescent transient formation obeying first-order kinetics. The bleaching is governed by UV-photon energy input, as well as by different chlorophyll molecular organizations in solvents of different polarities (in vitro), and in thylakoids (in situ). UV-C-induced bleaching of chlorophylls in thylakoids is probably caused by different mechanisms compared to UV-A- and UV-B-induced bleaching

  11. Relationship of intertidal surface sediment chlorophyll concentration to hyper-spectral reflectance and chlorophyll fluorescence

    NARCIS (Netherlands)

    Kromkamp, J.C.; Morris, E.P.; Forster, R.M.; Honeywill, C.; Hagerthey, S.; Paterson, D.M.

    2006-01-01

    Estimating biomass of microphytobenthos (MPB) on intertidal mud flats is extremely difficult due to their patchy occurrence, especially at the scale of an entire mud flat. We tested two optical approaches that can be applied in situ: spectral reflectance and chlorophyll fluorescence. These two

  12. Drought is Coming: Monitoring Vegetation Response to Water Scarcity through Variable Chlorophyll a Fluorescence

    Science.gov (United States)

    Guadagno, C. R.; Beverly, D.; Pleban, J. R.; Speckman, H. N.; Ewers, B. E.; Weinig, C.

    2017-12-01

    Aridity is one of the most pronounced environmental limits to plant survival, and understanding how plants respond to drought and recovery is crucial for predicting impacts on managed and natural ecosystems. Changes in soil moisture conditions induce a suite of physiological responses from the cell to ecosystem scale, complicating the assessment of drought effects. Characterizing early indicators of water scarcity across species can inform biophysical models with improved understanding of plant hydraulics. While indexes exist for drought monitoring across scales, many are unable to identify imminent vegetative drought. We explore a method of early diagnosis using leaf-level and kinetic imaging measures of variable chlorophyll a fluorescence. This is a fast and reliable tool capturing leaf physiological changes in advance of changes in NDVI or passive solar induced fluorescence. Both image and leaf level Pulse Amplitude Method (PAM) measurements illustrate the utility of variable chlorophyll a fluorescence for monitoring vegetative drought. Variable fluorescence was monitored across populations of crops, desert shrubs, montane conifers and riparian deciduous trees under variable water regimes. We found a strong correlation (R = 0.85) between the maximum efficiency of photosystem II measured using variable fluorescence (Fv'Fm') and leaf level electrolyte leakage, a proximal cause of drought stress induced by cellular damage in leaves. This association was confirmed in two gymnosperm species (Picea engelmannii and Pinus contorta) and for diverse varieties of the crop species Brassica rapa. The use of chlorophyll a fluorescence per image also allowed for early detection of drought in aspen (Populus tremuloides). These results provide evidence that variable chlorophyll fluorescence decreases between 25% and 70% in mild and severely droughted twigs with respect to ones collected from trees in wet soil conditions. While current systems for monitoring variable fluorescence

  13. Using chlorophyll fluorescence to determine stress in Eucalyptus ...

    African Journals Online (AJOL)

    Using chlorophyll fluorescence to determine stress in Eucalyptus grandis seedlings: scientific paper. ... Southern Forests: a Journal of Forest Science ... factors affect the functioning of the photosynthetic system, the status of the photosynthetic apparatus is a good indicator of the plant in terms of stress and stress adaptation.

  14. Analysis of Red and Far-Red Sun-Induced Chlorophyll Fluorescence and Their Ratio in Different Canopies Based on Observed and Modeled Data

    Directory of Open Access Journals (Sweden)

    Micol Rossini

    2016-05-01

    Full Text Available Sun-induced canopy chlorophyll fluorescence in both the red (FR and far-red (FFR regions was estimated across a range of temporal scales and a range of species from different plant functional types using high resolution radiance spectra collected on the ground. Field measurements were collected with a state-of-the-art spectrometer setup and standardized methodology. Results showed that different plant species were characterized by different fluorescence magnitude. In general, the highest fluorescence emissions were measured in crops followed by broadleaf and then needleleaf species. Red fluorescence values were generally lower than those measured in the far-red region due to the reabsorption of FR by photosynthetic pigments within the canopy layers. Canopy chlorophyll fluorescence was related to plant photosynthetic capacity, but also varied according to leaf and canopy characteristics, such as leaf chlorophyll concentration and Leaf Area Index (LAI. Results gathered from field measurements were compared to radiative transfer model simulations with the Soil-Canopy Observation of Photochemistry and Energy fluxes (SCOPE model. Overall, simulation results confirmed a major contribution of leaf chlorophyll concentration and LAI to the fluorescence signal. However, some discrepancies between simulated and experimental data were found in broadleaf species. These discrepancies may be explained by uncertainties in individual species LAI estimation in mixed forests or by the effect of other model parameters and/or model representation errors. This is the first study showing sun-induced fluorescence experimental data on the variations in the two emission regions and providing quantitative information about the absolute magnitude of fluorescence emission from a range of vegetation types.

  15. Estimation of photosynthesis in cyanobacteria by pulse-amplitude modulation chlorophyll fluorescence: problems and solutions.

    Science.gov (United States)

    Ogawa, Takako; Misumi, Masahiro; Sonoike, Kintake

    2017-09-01

    Cyanobacteria are photosynthetic prokaryotes and widely used for photosynthetic research as model organisms. Partly due to their prokaryotic nature, however, estimation of photosynthesis by chlorophyll fluorescence measurements is sometimes problematic in cyanobacteria. For example, plastoquinone pool is reduced in the dark-acclimated samples in many cyanobacterial species so that conventional protocol developed for land plants cannot be directly applied for cyanobacteria. Even for the estimation of the simplest chlorophyll fluorescence parameter, F v /F m , some additional protocol such as addition of DCMU or illumination of weak blue light is necessary. In this review, those problems in the measurements of chlorophyll fluorescence in cyanobacteria are introduced, and solutions to those problems are given.

  16. Development of the spectrometric imaging apparatus of laser induced fluorescence from plants and estimation of chlorophyll contents of rice leaves; Laser reiki keiko sokutei sochi no kaihatsu to inehanai no chlorophyll ganryo no suitei

    Energy Technology Data Exchange (ETDEWEB)

    Nakaya, K.; Shoji, K.; Hanyu, H.

    1999-05-01

    Photosynthetic activity of plants is an important factor to assess the micrometeorological effect of plant canopy or to estimate the influence of circumstances such as water stress. Light illumination induces fluorescence from a leaf or suspension of chloroplasts. The red chlorophyll fluorescence had been used to determine the process of the electron transportation in photosynthetic reaction. The fluorescence source other than chlorophyll is not announced sufficiently, but is supposed to be useful to determine the contents of the substance corresponding to physiological response of plants. We developed a fluorescence imaging apparatus to observe spectrum and distribution of laser induced fluorescence from a leaf. Pulsed UV-laser (Nd:YAG) induced blue-green fluorescence and red chlorophyll fluorescence from a green leaf. The pulse modulated measuring light and CCD with image-intensifier (ICCD) enable to detect the fluorescence from plants under illumination. The laser induced fluorescence (LIF) spectra were investigated to estimate the chlorophyll contents in leaves of rice. During the greening course of dark grown etiolated rice leaves, chlorophyll contents were determined using the extraction of leaves and steady state LIF spectra were measured. As a result, the ratio of fluorescent intensity between blue-green and red peaks (F460/F740 and F510/F740) decreased in proportion to alteration of chlorophyll contents respectively. These fluorescence intensity ratios perform more precise estimation of higher chlorophyll contents of leaves than reported red chlorophyll fluorescence intensity ratio (F690/E740). (author)

  17. Photosynthesis and chlorophyll fluorescence reaction to different shade stresses of weak light sensitive maize

    International Nuclear Information System (INIS)

    Wang, J.; Li, F.; Shi, Z.; Huang, H.; Jia, S.

    2017-01-01

    A split-plot experimental study was conducted to evaluate the effect of different shade stresses on photosynthesis and chlorophyll fluorescence of maize leaves.The experiment was designed on the south farm of Special Corn Institute, Shenyang Agricultural University, China.Data was collected from the day maize tasseled (Jul. 21) to the beginning of grouting (Aug.12 ) under 18%, 28%, 38%, 60%, and 75% shade stress to determine indexes such as photosynthesis and chlorophyll fluorescence after 15 days of shade treatment. Pairs of near-isogenic lines (NILs) of Shennong 98A (a barren stalk inbred line) and Shennong 98B (an un-barren stalk inbred line) were used as experimental materials to further reveal photosynthetic mechanisms of weak light sensitive maize when exposed to weak light conditions. Thus, a foundation was established for high density-resistant (shade resistant) corn breeding,while identifying weak light sensitive varieties. After shading treatment, chlorophyll a and total chlorophyll content of both varieties increased, chlorophyll b content first increased, followed by a decrease, while the net photosynthetic rate and stomatal conductance showed a gradually decreasing trend. The changing trends of photochemical quenching coefficient(qp) and effective quantum yield of PSII photochemistry (FPSII)were similar, FPSII and qP increased significantly as shading stress increased from 18% to 38%;however, FPSII and qP declined significantly under 60% and 75% shading stresses. The changing trend of NPQ was opposite to FPSII and qP. A comparison of both inbred lines showed that photosynthesis and chlorophyll fluorescence characteristics of Shennong 98B were superior to Shennong 98A. This study revealed the relationships between weak light sensitive lines and shade intensities by comparing differences in photosynthesis and chlorophyll fluorescence parameters. (author)

  18. Two-photon excited fluorescence from higher electronic states of chlorophylls in photosynthetic antenna complexes a new approach to detect strong excitonic chlorophyll a/b coupling

    CERN Document Server

    Leupold, D; Ehlert, J; Irrgang, K D; Renger, G; Lokstein, H

    2002-01-01

    Stepwise two-photon excitation of chlorophyll a and b in the higher plant main light-harvesting complex (LHC II) and the minor complex CP29 (as well as in organic solution) with 100-fs pulses in the Q/sub y/ region results in a weak blue fluorescence. The dependence of the spectral shape of the blue fluorescence on excitation wavelength offers a new approach to elucidate the long-standing problem of the origin of spectral "chlorophyll forms" in pigment-protein complexes, in particular the characterization of chlorophyll a/b-heterodimers. As a first result we present evidence for the existence of strong chlorophyll a/b-interactions (excitonically coupled transitions at 650 and 680 nm) in LHC II at ambient temperature. In comparison with LHC II, the experiments with CP29 provide further evidence that the lowest energy chlorophyll a transition (at ~680 nm) is not excitonically coupled to chlorophyll b. (22 refs).

  19. Gas exchange and chlorophyll a fluorescence parameters of ornamental bromeliads

    Directory of Open Access Journals (Sweden)

    Karina Gonçalves da Silva

    2017-10-01

    Full Text Available Gas exchange and chlorophyll a fluorescence are widely used in physiological and ecological studies; however, few studies have used these techniques with ornamental plants. This study tested the potential contribution of gas exchange and chlorophyll a fluorescence to evaluate the water and nutrients uptake by the tank and root system of epiphyte bromeliad Guzmania lingulata. For this purpose, we conducted an experiment with different water regime and another with different concentrations of nitrogen. The experiments were: 1 - Watering: Control (application of water into Tank and Root, Tank (watering into Tank, Root (watering Root and Drought (water suspension during the 90 days of experimentation and 2 - Nitrogen: Plants fertilized with Hoagland and Arnon nutrient solution exclusively into Tank or Root with nitrogen concentrations of control and 2.62 or 5.34 mM N applied as urea. The Fv /Fm ratio allowed comparing the treatments between experiments, demonstrating that Root and Tank both have the capacity to maintain G. lingulata photosynthetic activity and growth, while Drought treatment (water suspension was the limiting factor for energy conversion efficiency of PSII. However, gas exchange was more permissive as a parameter for comparing treatments in the nitrogen experiment, providing important information about the general aspects of the photosynthetic process in the watering experiment. Both gas exchange and chlorophyll a fluorescence can support the evaluation of G. lingulata physiological status and can be useful tools in ornamental horticultural studies.

  20. A Label-Free Microfluidic Biosensor for Activity Detection of Single Microalgae Cells Based on Chlorophyll Fluorescence

    Directory of Open Access Journals (Sweden)

    Junsheng Wang

    2013-11-01

    Full Text Available Detection of living microalgae cells is very important for ballast water treatment and analysis. Chlorophyll fluorescence is an indicator of photosynthetic activity and hence the living status of plant cells. In this paper, we developed a novel microfluidic biosensor system that can quickly and accurately detect the viability of single microalgae cells based on chlorophyll fluorescence. The system is composed of a laser diode as an excitation light source, a photodiode detector, a signal analysis circuit, and a microfluidic chip as a microalgae cell transportation platform. To demonstrate the utility of this system, six different living and dead algae samples (Karenia mikimotoi Hansen, Chlorella vulgaris, Nitzschia closterium, Platymonas subcordiformis, Pyramidomonas delicatula and Dunaliella salina were tested. The developed biosensor can distinguish clearly between the living microalgae cells and the dead microalgae cells. The smallest microalgae cells that can be detected by using this biosensor are 3 μm ones. Even smaller microalgae cells could be detected by increasing the excitation light power. The developed microfluidic biosensor has great potential for in situ ballast water analysis.

  1. A Label-Free Microfluidic Biosensor for Activity Detection of Single Microalgae Cells Based on Chlorophyll Fluorescence

    Science.gov (United States)

    Wang, Junsheng; Sun, Jinyang; Song, Yongxin; Xu, Yongyi; Pan, Xinxiang; Sun, Yeqing; Li, Dongqing

    2013-01-01

    Detection of living microalgae cells is very important for ballast water treatment and analysis. Chlorophyll fluorescence is an indicator of photosynthetic activity and hence the living status of plant cells. In this paper, we developed a novel microfluidic biosensor system that can quickly and accurately detect the viability of single microalgae cells based on chlorophyll fluorescence. The system is composed of a laser diode as an excitation light source, a photodiode detector, a signal analysis circuit, and a microfluidic chip as a microalgae cell transportation platform. To demonstrate the utility of this system, six different living and dead algae samples (Karenia mikimotoi Hansen, Chlorella vulgaris, Nitzschia closterium, Platymonas subcordiformis, Pyramidomonas delicatula and Dunaliella salina) were tested. The developed biosensor can distinguish clearly between the living microalgae cells and the dead microalgae cells. The smallest microalgae cells that can be detected by using this biosensor are 3 μm ones. Even smaller microalgae cells could be detected by increasing the excitation light power. The developed microfluidic biosensor has great potential for in situ ballast water analysis. PMID:24287532

  2. Contribution of chlorophyll fluorescence to the apparent vegetation reflectance

    International Nuclear Information System (INIS)

    Campbell, P.K. Entcheva; Middleton, E.M.; Corp, L.A.; Kim, M.S.

    2008-01-01

    Current strategies for monitoring the physiologic status of terrestrial vegetation rely on remote sensing reflectance data, which provide estimates of vigor based primarily on chlorophyll content. Chlorophyll fluorescence (ChlF) measurements offer a non-destructive alternative and a more direct approach for diagnosis of vegetation stress before a significant reduction in chlorophyll content has occurred. Thus, technology based on ChlF may allow more accurate carbon sequestration estimates and earlier stress detection than is possible when using reflectance data alone. However, the observed apparent vegetation reflectance (Ra) in reality includes contributions from both the reflected and fluoresced radiation. The aim of this study is to determine the relative contributions of reflectance and ChlF fractions to Ra in the red to near-infrared region (650-800 nm) of the spectrum. The practical objectives of the study are to: 1) evaluate the relationship between ChlF and reflectance at the foliar level for corn, soybean and maple; and 2) for corn, determine if the relationship established for healthy vegetation changes under nitrogen (N) deficiency. To obtain generally applicable results, experimental measurements were conducted on unrelated crop and tree species (corn, soybean and maple) under controlled conditions and a gradient of inorganic N fertilization levels. Optical reflectance spectra and actively induced ChlF emissions were collected on the same foliar samples, in conjunction with measurements of photosynthetic function, pigment levels, and carbon (C) and N content. The spectral trends were examined for similarities. On average, 10-20% of Ra at 685 nm was actually due to ChlF. The spectral trends in steady state and maximum fluorescence varied significantly, with steady state fluorescence (especially red, 685 nm) showing higher ability for species and treatment separation. The relative contribution of ChlF to Ra varied significantly among species, with maple

  3. Temporal chlorophyll fluorescence signals to track changes in optical properties of maturing rice panicles exposed to high night temperature

    Czech Academy of Sciences Publication Activity Database

    Šebela, David; Quiňones, C.; Olejníčková, Julie; Jagadish, K. S. V.

    2015-01-01

    Roč. 177, jun (2015), s. 75-85 ISSN 0378-4290 R&D Projects: GA MŠk(CZ) LO1415; GA MŠk EE2.3.20.0246 Institutional support: RVO:67179843 Keywords : chlorophyll fluorescence (Chl-F) * grain filling * high night temperature (HNT) * maturing panicle * reflectance * Rice (Oryza sativa) Subject RIV: EH - Ecology, Behaviour Impact factor: 2.927, year: 2015

  4. Probing Contaminant-Induced Alterations in Chlorophyll Fluorescence by AC-Dielectrophoresis-Based 2D-Algal Array

    Directory of Open Access Journals (Sweden)

    Coralie Siebman

    2018-02-01

    Full Text Available The investigation of contaminant impact on algae requires rapid and reliable cell collection and optical detection. The capability of alternative current (AC dielectrophoresis (DEP collection of whole cell arrays with combined fluorescence microscopy detection to follow the alterations of chlorophyll fluorescence during environmental contaminant exposure was explored. The application of an AC-field of 100 V cm−1, 100 Hz for 30 min to capture and immobilize the cells of green alga Chlamydomonas reinhardtii in two-dimensional (2D arrays does not induce changes in chlorophyll fluorescence. The results demonstrate that DEP-based 2D-arrays allow non-invasive detection of chlorophyll fluorescence change upon exposure to high concentrations of copper oxide nanoparticles and ionic copper. These results were in agreement with data obtained by flow cytometry used as a comparative method. The tool was also applied to follow the effect of a number of ubiquitous contaminants such as inorganic mercury, methylmercury, and diuron. However, a statistically significant short-term effect was observed only for mercury. Overall, DEP-based 2D-arrays of algal cells with fluorescence detection appear to be suitable for stain-free probing the effects on the photosynthetic microorganisms in highly polluted environment.

  5. Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications.

    Science.gov (United States)

    Murchie, E H; Lawson, T

    2013-10-01

    Chlorophyll fluorescence is a non-invasive measurement of photosystem II (PSII) activity and is a commonly used technique in plant physiology. The sensitivity of PSII activity to abiotic and biotic factors has made this a key technique not only for understanding the photosynthetic mechanisms but also as a broader indicator of how plants respond to environmental change. This, along with low cost and ease of collecting data, has resulted in the appearance of a large array of instrument types for measurement and calculated parameters which can be bewildering for the new user. Moreover, its accessibility can lead to misuse and misinterpretation when the underlying photosynthetic processes are not fully appreciated. This review is timely because it sits at a point of renewed interest in chlorophyll fluorescence where fast measurements of photosynthetic performance are now required for crop improvement purposes. Here we help the researcher make choices in terms of protocols using the equipment and expertise available, especially for field measurements. We start with a basic overview of the principles of fluorescence analysis and provide advice on best practice for taking pulse amplitude-modulated measurements. We also discuss a number of emerging techniques for contemporary crop and ecology research, where we see continual development and application of analytical techniques to meet the new challenges that have arisen in recent years. We end the review by briefly discussing the emerging area of monitoring fluorescence, chlorophyll fluorescence imaging, field phenotyping, and remote sensing of crops for yield and biomass enhancement.

  6. Behavior of Sethoxydim Alone or in Combination with Turnip Oils on Chlorophyll Fluorescence Parameter

    Directory of Open Access Journals (Sweden)

    Hossein HAMMAMI

    2014-03-01

    Full Text Available Sethoxydim is an acetyl-coenzyme A carboxylase (ACCase inhibitor that changed the shape of the chlorophyll fluorescence curve (kautsky curve in wild oat (Avena ludoviciana Durieu. in greenhouse experiment. This experiment was conducted as completely randomized factorial design with three replications at the College of Agriculture, Ferdowsi University of Mashhad, Iran, during 2012. Results of this study revealed that sethoxydim only and plus emulsifiable turnip oil changed the shape of the chlorophyll fluorescence curve (kautsky curve 7 days after spraying. Sethoxydim plus emulsifiable turnip oil changed the shape of the kautsky curve more than for sethoxydim only. We found that in our study the fv/fm (maximum quantum efficiency was closely linked to the fresh and dry weight dose-response. Sethoxydim plus emulsifiable turnip oil proved more rapidly effect on fv/fm in comparison with sethoxydim only. The fresh and dry weight dose-response relationship with fv/fm showed a similar behavior. This study revealed a good relation between fresh and dry weight according with values of 28 DAS and fv/fm 7 DAS. In general, the findings of this study revealed that Fv/Fm is a good parameter for evaluating effect of sethoxydim little time after spraying. Also, this research showed that 4 folds more time for classical screening methods comparing to chlorophyll fluorescence method. Thereupon, classical screening methods may be replaced by chlorophyll fluorescence method in future.

  7. Concentration Effect on Quenching of Chlorophyll a Fluorescence by All-Trans-β-Carotene in Photosynthesis

    Directory of Open Access Journals (Sweden)

    Chen Chen

    2017-09-01

    Full Text Available Absorption, fluorescence spectra of chlorophyll a (Chl-a and all-trans-β-carotene (β-Car mixing solution are investigated in different polarity and polarizability solvents. The carotenoids regulate the energy flow in photosynthesis by interaction with chlorophyll, leading to an observable reduction of Chl-a fluorescence. The fluorescence red shifts with the increasing solvent polarizability. The energy transfer in the Chl-a and β-Car system is proposed. The electron transfer should be dominant in quenching Chl-a fluorescence rather than the energy transfer in this system. Polar solvent with large polarizability shows high quenching efficiency. When dissolved in carbon tetrachloride, Chl-a presents red shift of absorption and blue shift of fluorescence spectra with increasing β-Car concentration, which implies a Chl-a conformational change.

  8. Chlorophyll fluorescence, Orbital and Photosynthesis: practical activities integrating concepts of Chemistry, Physics and Biology

    Directory of Open Access Journals (Sweden)

    Elgion Lucio da Silva Loreto

    2013-11-01

    Full Text Available These laboratory activities explore the relationship between the reserve of energy that occur during photosynthesis and the chlorophyll fluorescence emission when in solution as opposed to absence of fluorescence when the chlorophyll are in intact chloroplasts. This proposal can be used as short demo or as  activities with longer duration, to show chlorophyll's properties associated with the photosynthesis. The materials proposed for the implementation of the activities are simple, and possible to building it by the students, enabling the development of various skills and experimental proposals. The protocols are based on observations and record key questions to continue the execution. During the activities, questions promotes pauses for moments of reflection and review of concepts. At the end are presented and discussed proposals for development of interdisciplinary projects.

  9. Forest productivity and water stress in Amazonia: observations from GOSAT chlorophyll fluorescence.

    Science.gov (United States)

    Lee, Jung-Eun; Frankenberg, Christian; van der Tol, Christiaan; Berry, Joseph A; Guanter, Luis; Boyce, C Kevin; Fisher, Joshua B; Morrow, Eric; Worden, John R; Asefi, Salvi; Badgley, Grayson; Saatchi, Sassan

    2013-06-22

    It is unclear to what extent seasonal water stress impacts on plant productivity over Amazonia. Using new Greenhouse gases Observing SATellite (GOSAT) satellite measurements of sun-induced chlorophyll fluorescence, we show that midday fluorescence varies with water availability, both of which decrease in the dry season over Amazonian regions with substantial dry season length, suggesting a parallel decrease in gross primary production (GPP). Using additional SeaWinds Scatterometer onboard QuikSCAT satellite measurements of canopy water content, we found a concomitant decrease in daily storage of canopy water content within branches and leaves during the dry season, supporting our conclusion. A large part (r(2) = 0.75) of the variance in observed monthly midday fluorescence from GOSAT is explained by water stress over moderately stressed evergreen forests over Amazonia, which is reproduced by model simulations that include a full physiological representation of photosynthesis and fluorescence. The strong relationship between GOSAT and model fluorescence (r(2) = 0.79) was obtained using a fixed leaf area index, indicating that GPP changes are more related to environmental conditions than chlorophyll contents. When the dry season extended to drought in 2010 over Amazonia, midday basin-wide GPP was reduced by 15 per cent compared with 2009.

  10. The Impact of Different Water Regime on Chlorophyll Fluorescence of Pyrus pyraster L. and Sorbus domestica L

    Directory of Open Access Journals (Sweden)

    Viera Šajbidorová

    2015-01-01

    Full Text Available The water deficit is considered to be significant cause of photosynthesis defects. Measuring of chlorophyll fluorescence is one of the methods revealing defects in the photosynthetic apparatus. The experiment was established with two woody plant (Pyrus pyraster L. and Sorbus domestica L. cultivated in two different regimes of the substrate saturation. The measurement of the modulated fluorescence of chlorophyll a was done by FMS1 fluorometer during three-week period between June and September (2012 and 2013. There were analysed selected parameters of chlorophyll fluorescence: Fv/Fm – maximum quantum efficiency of PSII, ΦPSII – effective quantum yield of PSII and RFD – chlorophyll fluorescence decrease ratio. According to the obtained results, Pyrus pyraster has probably higher potential for adaptation to water deficiency. There were recorded the significant decreases mainly in the values of parameter RFD and ΦPSII for Sorbus domestica within duration of experiment with different water regime in both growing seasons 2012 and 2013. The results document a weak sensitivity of the parameter Fv/Fm on changes in the amount of available water in the substrate in both taxa.

  11. Using violet laser-induced chlorophyll fluorescence emission spectra for crop yield assessment of cowpea (Vigna unguiculata (L) Walp) varieties

    Science.gov (United States)

    Anderson, Benjamin; Buah-Bassuah, Paul K.; Tetteh, Jonathan P.

    2004-07-01

    The use of violet laser-induced chlorophyll fluorescence (LICF) emission spectra to monitor the growth of five varieties of cowpea in the University of Cape Coast Botanical Garden is presented. Radiation from a continuous-wave violet laser diode emitting at 396 nm through a fibre is closely incident on in vivo leaves of cowpea to excite chlorophyll fluorescence, which is detected by an integrated spectrometer with CCD readout. The chlorophyll fluorescence spectra with peaks at 683 and 731 nm were used for growth monitoring of the cowpea plants over three weeks and analysed using Gaussian spectral functions with curve fitted parameters to determine the peak positions, area under the spectral curve and the intensity ratio F683/F731. The variation in the intensity ratio of the chlorophyll bands showed sensitive changes indicating the photosynthetic activity of the cowpea varieties. A discussion of the fluorescence result as compared to conventional assessment is presented with regard to discrimination between the cowpea varieties in terms of crop yield performance.

  12. Biomonitoring chromium III or VI soluble pollution by moss chlorophyll fluorescence.

    Science.gov (United States)

    Chen, Yang-Er; Mao, Hao-Tian; Ma, Jie; Wu, Nan; Zhang, Chao-Ming; Su, Yan-Qiu; Zhang, Zhong-Wei; Yuan, Ming; Zhang, Huai-Yu; Zeng, Xian-Yin; Yuan, Shu

    2018-03-01

    We systematically compared the impacts of four Cr salts (chromic chloride, chromic nitrate, potassium chromate and potassium bichromate) on physiological parameters and chlorophyll fluorescence in indigenous moss Taxiphyllum taxirameum. Among the four Cr salts, K 2 Cr 2 O 7 treatment resulted in the most significant decrease in photosynthetic efficiency and antioxidant enzymes, increase in reactive oxygen species (ROS), and obvious cell death. Different form the higher plants, although hexavalent Cr(VI) salt treatments resulted in higher accumulation levels of Cr and were more toxic than Cr(III) salts, Cr(III) also induced significant changes in moss physiological parameters and chlorophyll fluorescence. Our results showed that Cr(III) and Cr(VI) could be monitored distinguishably according to the non-photochemical quenching (NPQ) fluorescence of sporadic purple and sporadic lavender images respectively. Then, the valence states and concentrations of Cr contaminations could be evaluated according to the image of maximum efficiency of PSII photochemistry (Fv/Fm) and the quantum yield of PSII electron transport (ΦPSII). Therefore, this study provides new ideas of moss's sensibility to Cr(III) and a new method to monitor Chromium contaminations rapidly and non-invasively in water. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Thermotolerance of apple tree leaves probed by chlorophyll a fluorescence and modulated 820 nm reflection during seasonal shift.

    Science.gov (United States)

    Duan, Ying; Zhang, Mengxia; Gao, Jin; Li, Pengmin; Goltsev, Vasilij; Ma, Fengwang

    2015-11-01

    During the seasonal shift from June to August, air temperatures increase. To explore how apple trees improve their thermotolerance during this shift, we examined the photochemical reaction capacity of apple tree leaves by simultaneous measurement of prompt chlorophyll fluorescence, delayed chlorophyll fluorescence, and modulated 820 nm reflection at varying temperatures. It was found that the reaction centers and antennae of photosystem II (PSII) and photosystem I (PSI), the donor side of PSII, the electron transfer capacity from QA to QB, and the reoxidation capacity of plastoquinol were all sensitive to heat stress, particularly in June. As the season shifted, apple tree leaves improved in thermotolerance. Interestingly, the acclimation to seasonal shift enhanced the thermotolerance of PSII and PSI reaction centers more than that of their antennae, and the activity of PSII more than that of PSI. This may be a strategy for plant adaptation to changes in environmental temperatures. In addition, results from prompt and delayed fluorescence, as well as modulated 820 nm reflection corroborate each other. We suggest that the simultaneous measurement of the three independent signals may provide more information on thermal acclimation mechanisms of photochemical reactions in plant leaves. Copyright © 2015 Elsevier B.V. All rights reserved.

  14. Qtl mapping of wheat doubled haploids for chlorophyll content and chlorophyll fluorescence kinetics under drought stress imposed at anthesis stage

    International Nuclear Information System (INIS)

    Ilyas, M.; Ilyas, N.; Arshad, M.; Kazi, A.G.

    2014-01-01

    Drought stress is one of the major environmental constraints to crop plants including wheat worldwide. Synthetic hexaploid can act as a vehicle for improving crop tolerance against biotic and abiotic stresses. Doubled haploid population consisting of one hundred and forty individuals derived from cross of Opata and SH223 was used in the present study to identify genomic regions associated with various quantitative attributes of physiological nature. Doubled haploid mapping population was phenotyped for chlorophyll content and chlorophyll fluorescence kinetics under control and drought stress imposed at anthesis stage. Genotyping of population was accomplished by utilizing two hundred and sixty one polymorphic Gaterslaben wheat microsatellites and Beltsville agriculture research center simple sequence repeats. Linkage map of doubled haploid population comprising of 19 linkage groups and covering map length of two thousands six hundred and twenty six (2626) cM was constructed using map maker software. Major and minor QTLs associated with quantitative traits were identified using QGene software. Major QTL for chlorophyll content (QTc.wwc-1B-S11) of doubled haploid mapping population under anthesis drought stress was mapped on chromosome 1B and explained 10.09 percent of phenotypic variation at LOD score of 5.5. Seven major and minor QTLs for PCFK of doubled haploids were identified on chromosome 1B, 7A and 7D under control and drought stress at anthesis stage. The identified QTLs are of prime importance for high resolution mapping in synthetic hexaploid wheat. Genomic synteny of doubled haploids was observed with rice chromosome 2, 4, 7 and maize chromosome 7 owing to occurrence of orthologous QTLs for chlorophyll content and chlorophyll fluorescence respectively. (author)

  15. Vertical distribution of chlorophyll a concentration and phytoplankton community composition from in situ fluorescence profiles: a first database for the global ocean

    Science.gov (United States)

    Sauzède, R.; Lavigne, H.; Claustre, H.; Uitz, J.; Schmechtig, C.; D'Ortenzio, F.; Guinet, C.; Pesant, S.

    2015-10-01

    In vivo chlorophyll a fluorescence is a proxy of chlorophyll a concentration, and is one of the most frequently measured biogeochemical properties in the ocean. Thousands of profiles are available from historical databases and the integration of fluorescence sensors to autonomous platforms has led to a significant increase of chlorophyll fluorescence profile acquisition. To our knowledge, this important source of environmental data has not yet been included in global analyses. A total of 268 127 chlorophyll fluorescence profiles from several databases as well as published and unpublished individual sources were compiled. Following a robust quality control procedure detailed in the present paper, about 49 000 chlorophyll fluorescence profiles were converted into phytoplankton biomass (i.e., chlorophyll a concentration) and size-based community composition (i.e., microphytoplankton, nanophytoplankton and picophytoplankton), using a method specifically developed to harmonize fluorescence profiles from diverse sources. The data span over 5 decades from 1958 to 2015, including observations from all major oceanic basins and all seasons, and depths ranging from the surface to a median maximum sampling depth of around 700 m. Global maps of chlorophyll a concentration and phytoplankton community composition are presented here for the first time. Monthly climatologies were computed for three of Longhurst's ecological provinces in order to exemplify the potential use of the data product. Original data sets (raw fluorescence profiles) as well as calibrated profiles of phytoplankton biomass and community composition are available on open access at PANGAEA, Data Publisher for Earth and Environmental Science. Raw fluorescence profiles: http://doi.pangaea.de/10.1594/PANGAEA.844212 and Phytoplankton biomass and community composition: http://doi.pangaea.de/10.1594/PANGAEA.844485

  16. Comparison of Sun-Induced Chlorophyll Fluorescence Estimates Obtained from Four Portable Field Spectroradiometers

    Science.gov (United States)

    Julitta, Tommaso; Corp, Lawrence A.; Rossini, Micol; Burkart, Andreas; Cogliati, Sergio; Davies, Neville; Hom, Milton; Mac Arthur, Alasdair; Middleton, Elizabeth M.; Rascher, Uwe; hide

    2016-01-01

    Remote Sensing of Sun-Induced Chlorophyll Fluorescence (SIF) is a research field of growing interest because it offers the potential to quantify actual photosynthesis and to monitor plant status. New satellite missions from the European Space Agency, such as the Earth Explorer 8 FLuorescence EXplorer (FLEX) mission-scheduled to launch in 2022 and aiming at SIF mapping-and from the National Aeronautics and Space Administration (NASA) such as the Orbiting Carbon Observatory-2 (OCO-2) sampling mission launched in July 2014, provide the capability to estimate SIF from space. The detection of the SIF signal from airborne and satellite platform is difficult and reliable ground level data are needed for calibration/validation. Several commercially available spectroradiometers are currently used to retrieve SIF in the field. This study presents a comparison exercise for evaluating the capability of four spectroradiometers to retrieve SIF. The results show that an accurate far-red SIF estimation can be achieved using spectroradiometers with an ultrafine resolution (less than 1 nm), while the red SIF estimation requires even higher spectral resolution (less than 0.5 nm). Moreover, it is shown that the Signal to Noise Ratio (SNR) plays a significant role in the precision of the far-red SIF measurements.

  17. Xanthophyll cycle-dependent quenching of photosystem II chlorophyll a fluorescence: Formation of a quenching complex with a short fluorescence lifetime

    Energy Technology Data Exchange (ETDEWEB)

    Gilmore, A.M.; Hazlett, T.L.; Govindjee [Univ. of Illinois, Urbana, IL (United States)

    1995-03-14

    Excess light triggers protective nonradiative dissipation of excitation energy in photosystem II through the formation of a trans-thylakoid pH gradient that in turn stimulates formation of zeaxanthin and antheraxanthin. These xanthophylls when combined with protonation of antenna pigment-protein complexes may increase nonradiative dissipation and, thus, quench chlorophyll a fluorescence. Here we measured, in parallel, the chlorophyll a fluorescence lifetime and intensity to understand the mechanism of this process. Increasing the xanthophyll concentration in the presence of a pH gradient (quenched conditions) decreases the fractional intensity of a fluorescence lifetime component centered at {approx}2 ns and increases a component at {approx}0.4 ns. Uncoupling the pH gradient (unquenched conditions) eliminates the 0.4-ns component. Changes in the xanthophyll concentration do not significantly affect the fluorescence lifetimes in either the quenched or unquenched sample conditions. However, there are differences in fluorescence lifetimes between the quenched and unquenched states that are due to pH-related, but nonxanthophyll-related, processes. Quenching of the maximal fluorescence intensity correlates with both the xanthophyll concentration and the fractional intensity of the 0.4-ns component. The unchanged fluorescence lifetimes and the proportional quenching of the maximal and dark-level fluorescence intensities indicate that the xanthophyllact on antenna, not reaction center processes. Further, the fluorescence quenching is interpreted as the combined effect of the pH gradient and xanthophyll concentration, resulting in the formation of a quenching complex with a short ({approx}0.4 ns) fluorescence lifetime. 33 refs., 6 figs., 2 tabs.

  18. The effect of UV-B and UV-C radiation on Hibiscus leaves determined by ultraweak luminescence and fluorescence induction [chlorophyll fluorescence induction, ultraweak luminescence

    International Nuclear Information System (INIS)

    Panagopoulos, I.; Bornman, J.F.; Björn, L.O.

    1989-01-01

    The effects of UV-C (254 nm) and UV-B (280-320 nm) on chlorophyll fluorescence induction and ultraweak luminescence (UL) in detached leaves of Hibiscus rosa-sinensis L. were investigated. UL from leaves exposed to UV-B and UV-C radiation reached a maximum 72 h after irradiation. In both cases most of the light was of a wavelength over 600 nm. An increase in the percentage of long wavelength light with time was detected. UV radiation increased peroxidase activity, which also reached a maximum 72 h after irradiation. UV-B and UV-C both reduced variable chlorophyll fluorescence. No effect on the amount of chlorophyll or UV screening pigments was observed with the short-term irradiation used in this investigation. (author)

  19. Measuring of the Chlorophyll a Fluorescence in Calcium Alginate-Encapsulated Algae

    Directory of Open Access Journals (Sweden)

    Ibeth Paola Delgadillo Rodríguez

    2017-05-01

    Full Text Available Immobilization of algae has many applications, such as water bioremediation and production of metabolites. One of the variables that can be determined in the immobilized algae is chlorophyll a fluorescence, because this parameter is related to the physiological response of these organisms. Therefore, the objective of this study was to explore a method for measuring the chlorophyll a fluorescence in calcium alginate-encapsulated algae. To do this, two species of microalgae (Scenedesmus ovalternus LAUN 001 and Parachlorella kessleri LAUN 002 were grown in monocultures in both free culture conditions (10 mL of algae preparation in 250 mL of Basal Bold Medium and encapsulated (250 spheres in 250 mL of Basal Bold Medium. Different measurement protocols of chlorophyll a fluorescence of photosystem II (PSII were performed by varying a the preadaptation time to darkness (10, 15 and 30 min, b the light intensity of the non-modulated fluorometer (between 1000 and 3500 μmoles m-2s-1, and c the time of exposure to actinic light (1, 2 and 5 s. The optimal conditions for the measurement of the maximum quantum yield of PSII (Fv/Fm in encapsulated algae were established as follow: a 30 min of preadaptation time; b 3000 μmoles m-2s-1 of the fluorometer light intensity; and c 1 to 2 s of exposure to actinic light. The following values in the photochemical activity of algae in non-stressful conditions were found: 0.760 – 0.764 for S. ovalternus, and 0.732 – 0.748 for P. kessleri. This methodology allows to observe some changes in the photochemical activity related with variations in the factors under which are the immobilized algae.

  20. Error in interpreting field chlorophyll fluorescence measurements: heat gain from solar radiation

    International Nuclear Information System (INIS)

    Marler, T.E.; Lawton, P.D.

    1994-01-01

    Temperature and chlorophyll fluorescence characteristics were determined on leaves of various horticultural species following a dark adaptation period where dark adaptation cuvettes were shielded from or exposed to solar radiation. In one study, temperature of Swietenia mahagoni (L.) Jacq. leaflets within cuvettes increased from approximately 36C to approximately 50C during a 30-minute exposure to solar radiation. Alternatively, when the leaflets and cuvettes were shielded from solar radiation, leaflet temperature declined to 33C in 10 to 15 minutes. In a second study, 16 horticultural species exhibited a lower variable: maximum fluorescence (F v :F m ) when cuvettes were exposed to solar radiation during the 30-minute dark adaptation than when cuvettes were shielded. In a third study with S. mahagoni, the influence of self-shielding the cuvettes by wrapping them with white tape, white paper, or aluminum foil on temperature and fluorescence was compared to exposing or shielding the entire leaflet and cuvette. All of the shielding methods reduced leaflet temperature and increased the F v :F m ratio compared to leaving cuvettes exposed. These results indicate that heat stress from direct exposure to solar radiation is a potential source of error when interpreting chlorophyll fluorescence measurements on intact leaves. Methods for moderating or minimizing radiation interception during dark adaptation are recommended. (author)

  1. Rapid algal toxicity assay using variable chlorophyll fluorescence for Chlorella kessleri (Chlorophyta)

    Czech Academy of Sciences Publication Activity Database

    Kvíderová, Jana

    2010-01-01

    Roč. 25, č. 6 (2010), s. 554-562 ISSN 1520-4081 R&D Projects: GA MŠk 1M0571 Institutional research plan: CEZ:AV0Z60050516 Keywords : bioassay * variable chlorophyll fluorescence * Chlorella kessleri Subject RIV: EF - Botanics Impact factor: 1.932, year: 2010

  2. A Method of High Throughput Monitoring Crop Physiology Using Chlorophyll Fluorescence and Multispectral Imaging.

    Science.gov (United States)

    Wang, Heng; Qian, Xiangjie; Zhang, Lan; Xu, Sailong; Li, Haifeng; Xia, Xiaojian; Dai, Liankui; Xu, Liang; Yu, Jingquan; Liu, Xu

    2018-01-01

    We present a high throughput crop physiology condition monitoring system and corresponding monitoring method. The monitoring system can perform large-area chlorophyll fluorescence imaging and multispectral imaging. The monitoring method can determine the crop current condition continuously and non-destructively. We choose chlorophyll fluorescence parameters and relative reflectance of multispectral as the indicators of crop physiological status. Using tomato as experiment subject, the typical crop physiological stress, such as drought, nutrition deficiency and plant disease can be distinguished by the monitoring method. Furthermore, we have studied the correlation between the physiological indicators and the degree of stress. Besides realizing the continuous monitoring of crop physiology, the monitoring system and method provide the possibility of machine automatic diagnosis of the plant physiology. Highlights: A newly designed high throughput crop physiology monitoring system and the corresponding monitoring method are described in this study. Different types of stress can induce distinct fluorescence and spectral characteristics, which can be used to evaluate the physiological status of plants.

  3. Spatial heterogeneity in active chlorophyll fluorescence and PSII activity of coral tissues

    DEFF Research Database (Denmark)

    Ralph, P.J.; Gademann, R.; Larkum, A.W.D.

    2002-01-01

    Chlorophyll-a fluorescence was measured in six species of coral, using pulse-amplitude-modulated fluorometers employing fibre-optic probes with diameters of 8 mm, 1 mm and 140 µm. The 8-mm probe integrated responses over a large area, giving more weight to coenosarc than polyp tissue for Acropora...

  4. Lettuce flavonoids screening and phenotyping by chlorophyll fluorescence excitation ratio.

    Science.gov (United States)

    Zivcak, Marek; Brückova, Klaudia; Sytar, Oksana; Brestic, Marian; Olsovska, Katarina; Allakhverdiev, Suleyman I

    2017-06-01

    Environmentally induced variation and the genotypic differences in flavonoid and phenolic content in lettuce can be reliably detected using the appropriate parameters derived from the records of rapid non-invasive fluorescence technique. The chlorophyll fluorescence excitation ratio method was designed as a rapid and non-invasive tool to estimate the content of UV-absorbing phenolic compounds in plants. Using this technique, we have assessed the dynamics of accumulation of flavonoids related to developmental changes and environmental effects. Moreover, we have tested appropriateness of the method to identify the genotypic differences and fluctuations in total phenolics and flavonoid content in lettuce. Six green and two red genotypes of lettuce (Lactuca sativa L.) grown in pots were exposed to two different environments for 50 days: direct sunlight (UV-exposed) and greenhouse conditions (low UV). The indices based on the measurements of chlorophyll fluorescence after red, green and UV excitation indicated increase of the content of UV-absorbing compounds and anthocyanins in the epidermis of lettuce leaves. In similar, the biochemical analyses performed at the end of the experiment confirmed significantly higher total phenolic and flavonoid content in lettuce plants exposed to direct sun compared to greenhouse conditions and in red compared to green genotypes. As the correlation between the standard fluorescence indices and the biochemical records was negatively influenced by the presence of red genotypes, we proposed the use of a new parameter named Modified Flavonoid Index (MFI) taking into an account both absorbance changes due to flavonol and anthocyanin content, for which the correlation with flavonoid and phenolic content was relatively good. Thus, our results confirmed that the fluorescence excitation ratio method is useful for identifying the major differences in phenolic and flavonoid content in lettuce plants and it can be used for high-throughput pre

  5. Use of in vivo chlorophyll fluorescence to estimate photosynthetic activity and biomass productivity in microalgae grown in different culture systems

    Directory of Open Access Journals (Sweden)

    Félix L Figueroa

    2013-11-01

    Full Text Available In vivo chlorophyll fluorescence associated to Photosystem II is being used to evaluate photosynthetic activity of microalgae grown in different types of photobioreactors; however, controversy on methodology is usual. Several recommendations on the use of chlorophyll fluorescence to estimate electron transport rate and productivity of microalgae grown in thin-layer cascade cultivators and methacrylate cylindrical vessels are included. Different methodologies related to the measure of photosynthetic activity in microalgae are discussed: (1 measurement of light absorption, (2 determination of electron transport rates versus irradiance and (3 use of simplified devices based on pulse amplitude modulated (PAM fluorescence as Junior PAM or Pocket PAM with optical fiber and optical head as measuring units, respectively. Data comparisons of in vivo chlorophyll fluorescence by using these devices and other PAM fluorometers as Water-PAM in the microalga Chlorella sp. (Chlorophyta are presented. Estimations of carbon production and productivity by transforming electron transport rate to gross photosynthetic rate (as oxygen evolution using reported oxygen produced per photons absorbed values and carbon photosynthetic yield based on reported oxygen/carbon ratio are also shown. The limitation of ETR as estimator of photosynthetic and biomass productivity is discussed. Low cost:quality PAMs can promote monitoring of chlorophyll fluorescence in algal biotechnology to estimate the photosynthetic activity and biomass productivity.

  6. Chlorophyll fluorescence imaging accurately quantifies freezing damage and cold acclimation responses in Arabidopsis leaves

    Directory of Open Access Journals (Sweden)

    Hincha Dirk K

    2008-05-01

    Full Text Available Abstract Background Freezing tolerance is an important factor in the geographical distribution of plants and strongly influences crop yield. Many plants increase their freezing tolerance during exposure to low, nonfreezing temperatures in a process termed cold acclimation. There is considerable natural variation in the cold acclimation capacity of Arabidopsis that has been used to study the molecular basis of this trait. Accurate methods for the quantitation of freezing damage in leaves that include spatial information about the distribution of damage and the possibility to screen large populations of plants are necessary, but currently not available. In addition, currently used standard methods such as electrolyte leakage assays are very laborious and therefore not easily applicable for large-scale screening purposes. Results We have performed freezing experiments with the Arabidopsis accessions C24 and Tenela, which differ strongly in their freezing tolerance, both before and after cold acclimation. Freezing tolerance of detached leaves was investigated using the well established electrolyte leakage assay as a reference. Chlorophyll fluorescence imaging was used as an alternative method that provides spatial resolution of freezing damage over the leaf area. With both methods, LT50 values (i.e. temperature where 50% damage occurred could be derived as quantitative measures of leaf freezing tolerance. Both methods revealed the expected differences between acclimated and nonacclimated plants and between the two accessions and LT50 values were tightly correlated. However, electrolyte leakage assays consistently yielded higher LT50 values than chlorophyll fluorescence imaging. This was to a large part due to the incubation of leaves for electrolyte leakage measurements in distilled water, which apparently led to secondary damage, while this pre-incubation was not necessary for the chlorophyll fluorescence measurements. Conclusion Chlorophyll

  7. Early Identification of Herbicide Stress in Soybean (Glycine max (L.) Merr.) Using Chlorophyll Fluorescence Imaging Technology.

    Science.gov (United States)

    Li, Hui; Wang, Pei; Weber, Jonas Felix; Gerhards, Roland

    2017-12-22

    Herbicides may damage soybean in conventional production systems. Chlorophyll fluorescence imaging technology has been applied to identify herbicide stress in weed species a few days after application. In this study, greenhouse experiments followed by field experiments at five sites were conducted to investigate if the chlorophyll fluorescence imaging is capable of identifying herbicide stress in soybean shortly after application. Measurements were carried out from emergence until the three-to-four-leaf stage of the soybean plants. Results showed that maximal photosystem II (PS II) quantum yield and shoot dry biomass was significantly reduced in soybean by herbicides compared to the untreated control plants. The stress of PS II inhibiting herbicides occurred on the cotyledons of soybean and plants recovered after one week. The stress induced by DOXP synthase-, microtubule assembly-, or cell division-inhibitors was measured from the two-leaf stage until four-leaf stage of soybean. We could demonstrate that the chlorophyll fluorescence imaging technology is capable for detecting herbicide stress in soybean. The system can be applied under both greenhouse and field conditions. This helps farmers to select weed control strategies with less phytotoxicity in soybean and avoid yield losses due to herbicide stress.

  8. [Flag leaf photosynthetic characteristics, change in chlorophyll fluorescence parameters, and their relationships with yield of winter wheat sowed in spring].

    Science.gov (United States)

    Xu, Lan; Gao, Zhi-qang; An, Wei; Li, Yan-liang; Jiao, Xiong-fei; Wang, Chuang-yun

    2016-01-01

    With five good winter wheat cultivars selected from the middle and lower reaches of Yangtze River and Southwest China as test materials, a field experiment in Xinding basin area of Shanxi Province was conducted to study the photosynthetic characteristics, chlorophyll content, and chlorophyll fluorescence parameters of flag leaf at different sowing dates, as well as the correlations between these indices and yield for two years (2013-2014). The results showed that the difference in most fluorescence parameters except chlorophyll content among cultivars was significant. The correlations between these fluorescence parameters and yield were significant. The variation coefficient of chlorophyll (Chl) content was low (0.12-0.17), and that of performance index based on absorption (PIabs) was high (0.32-0.39), with the partial correlation coefficients of them with grain yield from 2013 to 2014 ranged in 0.70-0.81. Under the early sowing condition, the grain yield positively correlated with PIabs at flowering and filling stages and chlorophyll content at grain filling stage, but negatively correlated with the relative variable fluorescence at I point (Vi) at grain filling stage. About 81.1%-82.8% of grain yield were determined by the variations of PIabs, Chl, and Vi. Wheat cultivars had various performances in the treatments with different sowing dates and a consistent trend was observed in the two experimental years. Among these 5 cultivars, Yangmai 13 was suitable for early sowing, with the flag leaf photosynthetic rate (Pn), Chl, most fluorescence parame-ters, and grain yield showed obviously high levels. In conclusion, under early sowing condition chlorophyll content at grain filling stages, PIabs at flowering and filling stages, and Pn were important indices for selecting wheat cultivars with high photosynthetic efficiency.

  9. Induction of the 'in vivo' chlorophyll fluorescence excited by CW and pulse-periodical laser radiation

    International Nuclear Information System (INIS)

    Zakhidov, Eh.A.; Zakhidov, M.A.; Kasymdzhanov, M.A.; Khabibullaev, P.K.

    1996-01-01

    Inductional changes of fluorescence of the native chlorophyll molecules in plant leaves excited by CW and pulse-periodical laser radiation are studied. The opportunity of controlling of the photosynthesis efficiency through fluorescence response at different rates of the electron flow in charge transfer chain of the photosynthetic apparatus of plant is shown. (author). 13 refs.; 4 refs

  10. Relationship between photosynthetic pigments and chlorophyll fluorescence in soybean under varying phosphorus nutrition at ambient and elevated CO2

    Science.gov (United States)

    Photosynthetic pigments such as chlorophyll (Chl) a, Chl b and carotenoids concentration, and chlorophyll fluorescence (CF) have widely been used as indicators of stress and photosynthetic performance in plants. Although photosynthetic pigments and CF are partly interdependent due to absorption and ...

  11. Impacts of short-term heatwaves on sun-induced chlorophyll fluorescence(SiF) in temperate tree species

    Science.gov (United States)

    Wang, F.; Gu, L.; Guha, A.; Han, J.; Warren, J.

    2017-12-01

    The current projections for global climate change forecast an increase in the intensity and frequency of extreme climatic events, such as droughts and short-term heat waves. Understanding the effects of short-term heat wave on photosynthesis process is of critical importance to predict global impacts of extreme weather event on vegetation. The diurnal and seasonal characteristics of SIF emitted from natural vegetation, e.g., forest and crop, have been studied at the ecosystem-scale, regional-scale and global-scale. However, the detailed response of SIF from different plant species under extremely weather event, especially short-term heat wave, have not been reported. The purpose of this study was to study the response of solar-induced chlorophyll fluorescence, gas exchange and continuous fluorescence at leaf scale for different temperate tree species. The short-term heatwave experiment was conducted using plant growth chamber (CMP6050, Conviron Inc., Canada). We developed an advanced spectral fitting method to obtain the plant SIF in the plant growth chamber. We compared SIF variation among different wavelength and chlorophyll difference among four temperate tree species. The diurnal variation of SIF signals at leaf-scales for temperate tree species are different under heat stress. The SIF response at leaf-scales and their difference for four temperate tree species are different during a cycle of short-term heatwave stress. We infer that SIF be used as a measure of heat tolerance for temperate tree species.

  12. Portable plant chlorophyll fluorimeter based on blue LED rapid induced technology

    Science.gov (United States)

    Zheng, Yibo; Mi, Ting; Zhang, Lei; Zhao, Jun

    2018-01-01

    Fluorimeter is an effective device for detecting chlorophyll a content in plants. In order to realize real-time nondestructive detection of plant blades, a camera based fluorescence instrument based on two color mirrors has been developed. The blue light LED is used as the excitation light source, and the lens is used for shaping and focusing the excitation light to ensure the excitation intensity and uniform illumination of the light source. The device uses a 45 degree two color mirror to separate the chlorophyll a excited light path and the fluorescence receiving light path. Finally, the fluorescent signal is collected by the silicon photocell, and the signal is processed by the circuit to transmit the digital information to the display. Through the analysis of the experimental data, the device has the advantages of small size, easy to carry, fast induction, etc., and can be widely applied in outdoor teaching and field investigation.

  13. Performance of a two-leaf light use efficiency model for mapping gross primary productivity against remotely sensed sun-induced chlorophyll fluorescence data.

    Science.gov (United States)

    Zan, Mei; Zhou, Yanlian; Ju, Weimin; Zhang, Yongguang; Zhang, Leiming; Liu, Yibo

    2018-02-01

    Estimating terrestrial gross primary production is an important task when studying the carbon cycle. In this study, the ability of a two-leaf light use efficiency model to simulate regional gross primary production in China was validated using satellite Global Ozone Monitoring Instrument - 2 sun-induced chlorophyll fluorescence data. The two-leaf light use efficiency model was used to estimate daily gross primary production in China's terrestrial ecosystems with 500-m resolution for the period from 2007 to 2014. Gross primary production simulated with the two-leaf light use efficiency model was resampled to a spatial resolution of 0.5° and then compared with sun-induced chlorophyll fluorescence. During the study period, sun-induced chlorophyll fluorescence and gross primary production simulated by the two-leaf light use efficiency model exhibited similar spatial and temporal patterns in China. The correlation coefficient between sun-induced chlorophyll fluorescence and monthly gross primary production simulated by the two-leaf light use efficiency model was significant (pproduction simulated by the two-leaf light use efficiency model were similar in spring and autumn in most vegetated regions, but dissimilar in winter and summer. The spatial variability of sun-induced chlorophyll fluorescence and gross primary production simulated by the two-leaf light use efficiency model was similar in spring, summer, and autumn. The proportion of spatial variations of sun-induced chlorophyll fluorescence and annual gross primary production simulated by the two-leaf light use efficiency model explained by ranged from 0.76 (2011) to 0.80 (2013) during the study period. Overall, the two-leaf light use efficiency model was capable of capturing spatial and temporal variations in gross primary production in China. However, the model needs further improvement to better simulate gross primary production in summer. Copyright © 2017 Elsevier B.V. All rights reserved.

  14. Investigation of Leaf Diseases and Estimation of Chlorophyll Concentration in Seven Barley Varieties Using Fluorescence and Hyperspectral Indices

    Directory of Open Access Journals (Sweden)

    Kang Yu

    2013-12-01

    Full Text Available Leaf diseases, such as powdery mildew and leaf rust, frequently infect barley plants and severely affect the economic value of malting barley. Early detection of barley diseases would facilitate the timely application of fungicides. In a field experiment, we investigated the performance of fluorescence and reflectance indices on (1 detecting barley disease risks when no fungicide is applied and (2 estimating leaf chlorophyll concentration (LCC. Leaf fluorescence and canopy reflectance were weekly measured by a portable fluorescence sensor and spectroradiometer, respectively. Results showed that vegetation indices recorded at canopy level performed well for the early detection of slightly-diseased plants. The combined reflectance index, MCARI/TCARI, yielded the best discrimination between healthy and diseased plants across seven barley varieties. The blue to far-red fluorescence ratio (BFRR_UV and OSAVI were the best fluorescence and reflectance indices for estimating LCC, respectively, yielding R2 of 0.72 and 0.79. Partial least squares (PLS and support vector machines (SVM regression models further improved the use of fluorescence signals for the estimation of LCC, yielding R2 of 0.81 and 0.84, respectively. Our results demonstrate that non-destructive spectral measurements are able to detect mild disease symptoms before significant losses in LCC due to diseases under natural conditions.

  15. Effect of anthocyanins, carotenoids, and flavonols on chlorophyll fluorescence excitation spectra in apple fruit: signature analysis, assessment, modelling, and relevance to photoprotection.

    Science.gov (United States)

    Merzlyak, Mark N; Melø, Thor Bernt; Naqvi, K Razi

    2008-01-01

    Whole apple fruit (Malus domestica Borkh.) widely differing in pigment content and composition has been examined by recording its chlorophyll fluorescence excitation and diffuse reflection spectra in the visible and near UV regions. Spectral bands sensitive to the pigment concentration have been identified, and linear models for non-destructive assessment of anthocyanins, carotenoids, and flavonols via chlorophyll fluorescence measurements are put forward. The adaptation of apple fruit to high light stress involves accumulation of these protective pigments, which absorb solar radiation in broad spectral ranges extending from UV to the green and, in anthocyanin-containing cultivars, to the red regions of the spectrum. In ripening apples the protective effect in the blue region could be attributed to extrathylakoid carotenoids. A simple model, which allows the simulation of chlorophyll fluorescence excitation spectra in the visible range and a quantitative evaluation of competitive absorption by anthocyanins, carotenoids, and flavonols, is described. Evidence is presented to support the view that anthocyanins, carotenoids, and flavonols play, in fruit with low-to-moderate pigment content, the role of internal traps (insofar as they compete with chlorophylls for the absorption of incident light in specific spectral bands), affecting thereby the shape of the chlorophyll fluorescence excitation spectrum.

  16. Acute toxicity of excess mercury on the photosynthetic performance of cyanobacterium, S. platensis--assessment by chlorophyll fluorescence analysis.

    Science.gov (United States)

    Lu, C M; Chau, C W; Zhang, J H

    2000-07-01

    Measurement of chlorophyll fluorescence has been shown to be a rapid, non-invasive, and reliable method to assess photosynthetic performance in a changing environment. In this study, acute toxicity of excess Hg on the photosynthetic performance of the cyanobacterium S. platensis, was investigated by use of chlorophyll fluorescence analysis after cells were exposed to excess Hg (up to 20 microM) for 2 h. The results determined from the fast fluorescence kinetics showed that Hg induced a significant increase in the proportion of the Q(B)-non-reducing PSII reaction centers. The fluorescence parameters measured under the steady state of photosynthesis demonstrated that the increase of Hg concentration led to a decrease in the maximal efficiency of PSII photochemistry, the efficiency of excitation energy capture by the open PSII reaction centers, and the quantum yield of PSII electron transport. Mercury also resulted in a decrease in the coefficients of photochemical and non-photochemical quenching. Mercury may have an acute toxicity on cyanobacteria by inhibiting the quantum yield of photosynthesis sensitively and rapidly. Such changes occurred before any other visible damages that may be evaluated by other conventional measurements. Our results also demonstrated that chlorophyll fluorescence analysis can be used as a useful physiological tool to assess early stages of change in photosynthetic performance of algae in response to heavy metal pollution.

  17. [Effects of simulated acid rain on Quercus glauca seedlings photosynthesis and chlorophyll fluorescence].

    Science.gov (United States)

    Li, Jia; Jiang, Hong; Yu, Shu-quan; Jiang, Fu-wei; Yin, Xiu-min; Lu, Mei-juan

    2009-09-01

    Taking the seedlings of Quercus glauca, a dominant evergreen broadleaf tree species in subtropical area, as test materials, this paper studied their photosynthesis, chlorophyll fluorescence, and chlorophyll content under effects of simulated acid rain with pH 2.5, 4.0, and 5.6 (CK). After 2-year acid rain stress, the net photosynthetic rate of Q. glauca increased significantly with decreasing pH of acid rain. The acid rain with pH 2.5 and 4.0 increased the stomatal conductance and transpiration rate, and the effect was more significant under pH 2.5. The intercellular CO2 concentration decreased in the order of pH 2.5 > pH 5.6 > pH 4.0. The maximum photosynthetic rate, light compensation point, light saturation point, and dark respiration rate were significantly higher under pH 2.5 and 4.0 than under pH 5.6, while the apparent quantum yield was not sensitive to acid rain stress. The maximal photochemical efficiency of PS II and the potential activity of PS II under pH 2.5 and 4.0 were significantly higher than those under pH 5.6. The relative chlorophyll content was in the order of pH 2.5 > pH 5.6 > pH 4.0, and there was a significant difference between pH 2.5 and 4.0. All the results suggested that the photosynthesis and chlorophyll fluorescence of Q. glauca increased under the effects of acid rain with pH 2.5 and 4.0, and the acid rain with pH 2.5 had more obvious effects.

  18. Engineered drought tolerance in tomato plants is reflected in chlorophyll fluorescence emission

    Czech Academy of Sciences Publication Activity Database

    Mishra, Kumud; Iannacone, R.; Petrozza, A.; Mishra, Anamika; Armentano, N.; La Vecchia, G.; Trtílek, M.; Cellini, F.; Nedbal, Ladislav

    2012-01-01

    Roč. 182, SI (2012), s. 79-86 ISSN 0168-9452 R&D Projects: GA MŠk OC08055; GA MŠk 2B06068; GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : Chlorophyll fluorescence * Drought * High-throughput screening * Solanum lycopersicum * Transcription factor * Transgenic plant Subject RIV: EH - Ecology, Behaviour Impact factor : 2.922, year: 2012

  19. Spectral effects of LEDs on chlorophyll fluorescence and pigmentation in Phalaenopsis ‘Vivien’ and ‘Purple Star’

    DEFF Research Database (Denmark)

    Ouzounis, Theoharis; Fretté, Xavier; Ottosen, Carl-Otto

    2015-01-01

    We examined the effect of light emitting diode (LED) lighting in greenhouse facilities on growth, chlorophyll fluorescence and pigmentation in Phalaenopsis 'Vivien' and 'Purple Star' under purpose-built LED arrays yielding c. 200μmolm-2s-1 at plant height for 14h per day and 24/18°Cday/night temp......We examined the effect of light emitting diode (LED) lighting in greenhouse facilities on growth, chlorophyll fluorescence and pigmentation in Phalaenopsis 'Vivien' and 'Purple Star' under purpose-built LED arrays yielding c. 200μmolm-2s-1 at plant height for 14h per day and 24/18°Cday...

  20. Light stress effect and by nitrogen deficiency in plants of Petiveria alliacea measured with two-chlorophyll-fluorescence technique

    Science.gov (United States)

    Zuluaga, H.; Oviedo, A.; Solarte, Efrain; Pena, E. J.

    2004-10-01

    The chlorophyll fluorescence was studied in Petiveria alliacea plants exposed to different nitrogen concentrations and light radiation, the response was measured by two different forms; (1) measuring the photosynthetic efficiency with a pulse amplitude modulated fluorometro (PAM) emitted by a 650 nm diode and (2) measuring the fluorescence spectra caused by high power 452 nm diode with a SD2000 spectrometer. It was found out that the photosynthetic efficiency decreased in the plants exposed to high radiance and low nitrogen. Two chlorophyll fluorescence peaks were observed on 684 nm and 739 nm, the intensities in this wavelengths are inversely related with the light radiance. The correlation between the FIR and photosynthetic efficiency was very strong (r2 = -0.809, p Alliacea plants.

  1. Assessment of salt tolerance of some newly developed and candidate wheat (triticum aestivum l.) cultivars using gas exchange and chlorophyll fluorescence attributes

    International Nuclear Information System (INIS)

    Kanwal, H.; Shahbaz, M.; Ashraf, M.

    2011-01-01

    The present study was aimed to assess salt tolerance of some newly developed and candidate cultivars of wheat using gas exchange and chlorophyll fluorescence parameters. Ten wheat cultivars including five newly developed (S-24, Saher-2006, Fsd-2008, Lasani and Inqlab-91) and five candidate (P .B-18, M.P-65, S.H-20, AARI-10 and G.A-20) were grown in sand culture. Salt stress (150 mM NaCl in Hoagland's nutrient solution) was applied at the seedling stage. A significant reduction in plant biomass production was recorded in all wheat cultivars. Cultivars S-24, Saher-2006 and Fsd-2008 showed less reduction in biomass production as compared with the other cultivars. Different gas exchange attributes such as leaf net photosynthetic rate (A), transpiration rate ( E), and stomatal conductance (gs) were also adversely affected due to salt stress and were positively associated with the plant biomass production of the genotypes under saline stress. More negative effects in relation to these gas exchange attributes were recorded in cvs. Lasani, G.A-20 and ARRI-10 than those in the other cultivars. Leaf maximum chlorophyll fluorescence (Fm), maximum fluorescence at steady state (Fms ), and photochemical fluorescence quenching (Qp) increased while maximum quantum yield (Fv/Fm), quantum yield of electron transport (Qp), electron transport rate ( ETR ) and non-photochemical quenching (Qn) decreased due to imposition of salt stress. The adverse effects of salt stress on these chlorophyll fluorescence attributes were minimum in cultivars S-24, Saher-2006 and Fsd-2008. A significant positive correlation was recorded between biomass production, different gas exchange attributes and chlorophyll fluorescence parameters. Overall, cvs. S-24, Saher-2006 and Fsd-2008 were ranked as salt tolerant on the basis of their performance in biomass production, gas exchange attributes and chlorophyll fluorescence parameters. (author)

  2. Chlorophyll a Covalently Bonded to Organo-Modified Translucent Silica Xerogels: Optimizing Fluorescence and Maximum Loading.

    Science.gov (United States)

    García-Sánchez, M A; Serratos, I N; Sosa, R; Tapia-Esquivel, T; González-García, F; Rojas-González, F; Tello-Solís, S R; Palacios-Enriquez, A Y; Esparza Schulz, J M; Arrieta, A

    2016-07-22

    Chlorophyll is a pyrrolic pigment with important optical properties, which is the reason it has been studied for many years. Recently, interest has been rising with respect to this molecule because of its outstanding physicochemical properties, particularly applicable to the design and development of luminescent materials, hybrid sensor systems, and photodynamic therapy devices for the treatment of cancer cells and bacteria. More recently, our research group has been finding evidence for the possibility of preserving these important properties of substrates containing chlorophyll covalently incorporated within solid pore matrices, such as SiO₂, TiO₂ or ZrO₂ synthesized through the sol-gel process. In this work, we study the optical properties of silica xerogels organo-modified on their surface with allyl and phenyl groups and containing different concentrations of chlorophyll bonded to the pore walls, in order to optimize the fluorescence that these macrocyclic species displays in solution. The intention of this investigation was to determine the maximum chlorophyll a concentration at which this molecule can be trapped inside the pores of a given xerogel and to ascertain if this pigment remains trapped as a monomer, a dimer, or aggregate. Allyl and phenyl groups were deposited on the surface of xerogels in view of their important effects on the stability of the molecule, as well as over the fluorescence emission of chlorophyll; however, these organic groups allow the trapping of either chlorophyll a monomers or dimers. The determination of the above parameters allows finding the most adequate systems for subsequent in vitro or in vivo studies. The characterization of the obtained xerogels was performed through spectroscopic absorption, emission and excitation spectra. These hybrid systems can be employed as mimics of natural systems; the entrapment of chlorophyll inside pore matrices indicates that it is possible to exploit some of the most physicochemical

  3. Chlorophyll a Covalently Bonded to Organo-Modified Translucent Silica Xerogels: Optimizing Fluorescence and Maximum Loading

    Directory of Open Access Journals (Sweden)

    M. A. García-Sánchez

    2016-07-01

    Full Text Available Chlorophyll is a pyrrolic pigment with important optical properties, which is the reason it has been studied for many years. Recently, interest has been rising with respect to this molecule because of its outstanding physicochemical properties, particularly applicable to the design and development of luminescent materials, hybrid sensor systems, and photodynamic therapy devices for the treatment of cancer cells and bacteria. More recently, our research group has been finding evidence for the possibility of preserving these important properties of substrates containing chlorophyll covalently incorporated within solid pore matrices, such as SiO2, TiO2 or ZrO2 synthesized through the sol-gel process. In this work, we study the optical properties of silica xerogels organo-modified on their surface with allyl and phenyl groups and containing different concentrations of chlorophyll bonded to the pore walls, in order to optimize the fluorescence that these macrocyclic species displays in solution. The intention of this investigation was to determine the maximum chlorophyll a concentration at which this molecule can be trapped inside the pores of a given xerogel and to ascertain if this pigment remains trapped as a monomer, a dimer, or aggregate. Allyl and phenyl groups were deposited on the surface of xerogels in view of their important effects on the stability of the molecule, as well as over the fluorescence emission of chlorophyll; however, these organic groups allow the trapping of either chlorophyll a monomers or dimers. The determination of the above parameters allows finding the most adequate systems for subsequent in vitro or in vivo studies. The characterization of the obtained xerogels was performed through spectroscopic absorption, emission and excitation spectra. These hybrid systems can be employed as mimics of natural systems; the entrapment of chlorophyll inside pore matrices indicates that it is possible to exploit some of the most

  4. Chlorophyll induced fluorescence retrieved from GOME2 for improving gross primary productivity estimates of vegetation

    Science.gov (United States)

    van Leth, Thomas C.; Verstraeten, Willem W.; Sanders, Abram F. J.

    2014-05-01

    Mapping terrestrial chlorophyll fluorescence is a crucial activity to obtain information on the functional status of vegetation and to improve estimates of light-use efficiency (LUE) and global primary productivity (GPP). GPP quantifies carbon fixation by plant ecosystems and is therefore an important parameter for budgeting terrestrial carbon cycles. Satellite remote sensing offers an excellent tool for investigating GPP in a spatially explicit fashion across different scales of observation. The GPP estimates, however, still remain largely uncertain due to biotic and abiotic factors that influence plant production. Sun-induced fluorescence has the ability to enhance our knowledge on how environmentally induced changes affect the LUE. This can be linked to optical derived remote sensing parameters thereby reducing the uncertainty in GPP estimates. Satellite measurements provide a relatively new perspective on global sun-induced fluorescence, enabling us to quantify spatial distributions and changes over time. Techniques have recently been developed to retrieve fluorescence emissions from hyperspectral satellite measurements. We use data from the Global Ozone Monitoring Instrument 2 (GOME2) to infer terrestrial fluorescence. The spectral signatures of three basic components atmospheric: absorption, surface reflectance, and fluorescence radiance are separated using reference measurements of non-fluorescent surfaces (desserts, deep oceans and ice) to solve for the atmospheric absorption. An empirically based principal component analysis (PCA) approach is applied similar to that of Joiner et al. (2013, ACP). Here we show our first global maps of the GOME2 retrievals of chlorophyll fluorescence. First results indicate fluorescence distributions that are similar with that obtained by GOSAT and GOME2 as reported by Joiner et al. (2013, ACP), although we find slightly higher values. In view of optimizing the fluorescence retrieval, we will show the effect of the references

  5. SmartFluo: A Method and Affordable Adapter to Measure Chlorophyll a Fluorescence with Smartphones

    NARCIS (Netherlands)

    Friedrichs, Anna; Busch, Julia; van der Woerd, H.J.; Zielinski, Oliver

    2017-01-01

    In order to increase the monitoring capabilities of inland and coastal waters, there is a need for new, affordable, sensitive and mobile instruments that could be operated semi-automatically in the field. This paper presents a prototype device to measure chlorophyll a fluorescence: the SmartFluo.

  6. Diurnal Variability in Chlorophyll-a, Carotenoids, CDOM and SO₄(2-) Intensity of Offshore Seawater Detected by an Underwater Fluorescence-Raman Spectral System.

    Science.gov (United States)

    Chen, Jing; Ye, Wangquan; Guo, Jinjia; Luo, Zhao; Li, Ying

    2016-07-13

    A newly developed integrated fluorescence-Raman spectral system (λex = 532 nm) for detecting Chlorophyll-a (chl-a), Chromophoric Dissolved Organic Matter (CDOM), carotenoids and SO₄(2-) in situ was used to successfully investigate the diurnal variability of all above. Simultaneously using the integration of fluorescence spectroscopy and Raman spectroscopy techniques provided comprehensive marine information due to the complementarity between the different excitation mechanisms and different selection rules. The investigation took place in offshore seawater of the Yellow Sea (36°05'40'' N, 120°31'32'' E) in October 2014. To detect chl-a, CDOM, carotenoids and SO₄(2-), the fluorescence-Raman spectral system was deployed. It was found that troughs of chl-a and CDOM fluorescence signal intensity were observed during high tides, while the signal intensity showed high values with larger fluctuations during ebb-tide. Chl-a and carotenoids were influenced by solar radiation within a day cycle by different detection techniques, as well as displaying similar and synchronous tendency. CDOM fluorescence cause interference to the measurement of SO₄(2-). To avoid such interference, the backup Raman spectroscopy system with λex = 785 nm was employed to detect SO₄(2-) concentration on the following day. The results demonstrated that the fluorescence-Raman spectral system has great potential in detection of chl-a, carotenoids, CDOM and SO₄(2-) in the ocean.

  7. Chlorophyll fluorescence emission can screen cold tolerance of cold acclimated Arabidopsis thaliana accessions

    Czech Academy of Sciences Publication Activity Database

    Mishra, Anamika; Heyer, A. G.; Mishra, Kumud

    2014-01-01

    Roč. 10, č. 38 (2014) ISSN 1746-4811 R&D Projects: GA MŠk EE2.3.20.0246; GA MŠk 7E12047 Institutional support: RVO:67179843 Keywords : high-throughput screening * chlorophyll a fluorescence transients * cold tolerance * cold acclimation * whole plant * Arabidopsis thaliana Subject RIV: EH - Ecology, Behaviour Impact factor: 3.102, year: 2014

  8. Chlorophyll fluorescence tracks seasonal variations of photosynthesis from leaf to canopy in a temperate forest.

    Science.gov (United States)

    Yang, Hualei; Yang, Xi; Zhang, Yongguang; Heskel, Mary A; Lu, Xiaoliang; Munger, J William; Sun, Shucun; Tang, Jianwu

    2017-07-01

    Accurate estimation of terrestrial gross primary productivity (GPP) remains a challenge despite its importance in the global carbon cycle. Chlorophyll fluorescence (ChlF) has been recently adopted to understand photosynthesis and its response to the environment, particularly with remote sensing data. However, it remains unclear how ChlF and photosynthesis are linked at different spatial scales across the growing season. We examined seasonal relationships between ChlF and photosynthesis at the leaf, canopy, and ecosystem scales and explored how leaf-level ChlF was linked with canopy-scale solar-induced chlorophyll fluorescence (SIF) in a temperate deciduous forest at Harvard Forest, Massachusetts, USA. Our results show that ChlF captured the seasonal variations of photosynthesis with significant linear relationships between ChlF and photosynthesis across the growing season over different spatial scales (R 2  = 0.73, 0.77, and 0.86 at leaf, canopy, and satellite scales, respectively; P chlorophyll content (R 2  = 0.65 for canopy GPP SIF and chlorophyll content; P < 0.0001), leaf area index (LAI) (R 2  = 0.35 for canopy GPP SIF and LAI; P < 0.0001), and normalized difference vegetation index (NDVI) (R 2  = 0.36 for canopy GPP SIF and NDVI; P < 0.0001). Our results suggest that ChlF can be a powerful tool to track photosynthetic rates at leaf, canopy, and ecosystem scales. © 2016 John Wiley & Sons Ltd.

  9. Interactions between iron and titanium metabolism in spinach: A chlorophyll fluorescence study in hydropony

    Czech Academy of Sciences Publication Activity Database

    Cígler, Petr; Olejníčková, Julie; Hrubý, Martin; Cséfalvay, Ladislav; Peterka, J.; Kužel, S.

    2010-01-01

    Roč. 167, č. 18 (2010), s. 1592-1597 ISSN 0176-1617 Institutional research plan: CEZ:AV0Z40550506; CEZ:AV0Z40500505; CEZ:AV0Z60870520 Keywords : chlorophyll fluorescence * iron * photosynthetic apparatus * spinach * titanium Subject RIV: CC - Organic Chemistry Impact factor: 2.677, year: 2010

  10. FluorWPS: A Monte Carlo ray-tracing model to compute sun-induced chlorophyll fluorescence of three-dimensional canopy

    Science.gov (United States)

    A model to simulate radiative transfer (RT) of sun-induced chlorophyll fluorescence (SIF) of three-dimensional (3-D) canopy, FluorWPS, was proposed and evaluated. The inclusion of fluorescence excitation was implemented with the ‘weight reduction’ and ‘photon spread’ concepts based on Monte Carlo ra...

  11. High-resolution methods for fluorescence retrieval from space

    NARCIS (Netherlands)

    Mazzoni, M.; Falorni, P.; Verhoef, W.

    2010-01-01

    The retrieval from space of a very weak fluorescence signal was studied in the O2A and O2B oxygen atmospheric absorption bands. The accuracy of the method was tested for the retrieval of the chlorophyll fluorescence and reflectance terms contributing to the sensor signal. The radiance at the top of

  12. [Effects of different water potentials on leaf gas exchange and chlorophyll fluorescence parameters of cucumber during post-flowering growth stage].

    Science.gov (United States)

    Lin, Lu; Tang, Yun; Zhang, Ji-tao; Yan, Wan-li; Xiao, Jian-hong; Ding, Chao; Dong, Chuan; Ji, Zeng-shun

    2015-07-01

    Impacts of different substrate water potentials (SWP) on leaf gas exchange and chlorophyll fluorescence parameters of greenhouse cucumber during its post-flowering growth stage were analyzed in this study. The results demonstrated that -10 and -30 kPa were the critical values for initiating stomatal and non-stomatal limitation of drought stress, respectively. During the stage of no drought stress (-10 kPa gas exchange parameters and chlorophyll fluorescence parameters were not different significantly among treatments. During the stage of stomatal limitation of drought stress (-30 kPawater use efficiency (WUEi) and non-photochemical quenching (qN) increased. In this stage, gas exchange parameters changed faster than chlorophyll fluorescence parameters and differed significantly among treatments. During the stage of non-stomatal limitation of drought stress (-45 kPa≤SWP ≤ -30 kPa), with the decrease of SWP, light saturation point (LSP), Rd, CE, Vcmax, VTPU, LS, WUEi, ΦpPSII, Fv/Fm and qp decreased, while CCP, Ci and qN increased. In this stage, chlorophyll fluorescence parameters changed faster than gas exchange parameters and differed significantly among treatments. In production of greenhouse cucumber, -10 and -5 kPa should be the lower and upper limit value of irrigation, respectively. The stomatal limitation of drought stress could be relieved by irrigation before SWP decreased to -30 kPa. While, the non-stomatal injury of drought stress would be unrecoverable once SWP decreased to lower than -30 kPa.

  13. Chlorophyll fluorescence emission as a reporter on cold tolerance in Arabidopsis thaliana accessions

    Czech Academy of Sciences Publication Activity Database

    Mishra, Anamika; Mishra, Kumud; Höermiller, I. I.; Heyer, A. G.; Nedbal, Ladislav

    2011-01-01

    Roč. 6, č. 2 (2011), s. 301-310 ISSN 1559-2316 R&D Projects: GA MŠk(CZ) ED1.1.00/02.0073; GA MŠk OC08055; GA MŠk 2B06068 Institutional research plan: CEZ:AV0Z60870520 Keywords : chlorophyll fluorescence * cold acclimation * electrolyte leakage * high - throughput screening * natural accessions Subject RIV: EH - Ecology, Behaviour

  14. Computer Reconstruction of Plant Growth and Chlorophyll Fluorescence Emission in Three Spatial Dimensions

    Czech Academy of Sciences Publication Activity Database

    Bellasio, Ch.; Olejníčková, Julie; Tesař, R.; Šebela, David; Nedbal, Ladislav

    2012-01-01

    Roč. 12, č. 1 (2012), s. 1052-1071 ISSN 1424-8220 R&D Projects: GA ČR GA522/09/1565; GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : 3D reconstruction * chlorophyll fluorescence imaging * leaf area * leaf angle * plant growth * coded light Subject RIV: EH - Ecology, Behaviour Impact factor: 1.953, year: 2012

  15. On the sub-maximal yield and photo-electric stimulation of chlorophyll a fluorescence in single turnover excitations in plant cells

    NARCIS (Netherlands)

    Vredenberg, W.J.; Rensen, van J.J.S.; Rodrigues, G.C.

    2006-01-01

    A set of expressions is derived which quantifies the chlorophyll fluorescence yield in terms of rate constants of primary light reactions of PSII, the fraction of open and semi-open RCs and of the electric field sensed by the RC in the thylakoid membrane. The decay kinetics of the chlorophyll

  16. UPSCALING OF SOLAR INDUCED CHLOROPHYLL FLUORESCENCE FROM LEAF TO CANOPY USING THE DART MODEL AND A REALISTIC 3D FOREST SCENE

    Directory of Open Access Journals (Sweden)

    W. Liu

    2017-10-01

    Full Text Available Solar induced chlorophyll a fluorescence (SIF has been shown to be an excellent proxy of photosynthesis at multiple scales. However, the mechanical linkages between fluorescence and photosynthesis at the leaf level cannot be directly applied at canopy or field scales, as the larger scale SIF emission depends on canopy structure. This is especially true for the forest canopies characterized by high horizontal and vertical heterogeneity. While most of the current studies on SIF radiative transfer in plant canopies are based on the assumption of a homogeneous canopy, recently codes have been developed capable of simulation of fluorescence signal in explicit 3-D forest canopies. Here we present a canopy SIF upscaling method consisting of the integration of the 3-D radiative transfer model DART and a 3-D object model BLENDER. Our aim was to better understand the effect of boreal forest canopy structure on SIF for a spatially explicit forest canopy.

  17. Variability of sun-induced chlorophyll fluorescence according to stand age-related processes in a managed loblolly pine forest.

    Science.gov (United States)

    Colombo, Roberto; Celesti, Marco; Bianchi, Remo; Campbell, Petya K E; Cogliati, Sergio; Cook, Bruce D; Corp, Lawrence A; Damm, Alexander; Domec, Jean-Christophe; Guanter, Luis; Julitta, Tommaso; Middleton, Elizabeth M; Noormets, Asko; Panigada, Cinzia; Pinto, Francisco; Rascher, Uwe; Rossini, Micol; Schickling, Anke

    2018-02-20

    Leaf fluorescence can be used to track plant development and stress, and is considered the most direct measurement of photosynthetic activity available from remote sensing techniques. Red and far-red sun-induced chlorophyll fluorescence (SIF) maps were generated from high spatial resolution images collected with the HyPlant airborne spectrometer over even-aged loblolly pine plantations in North Carolina (United States). Canopy fluorescence yield (i.e., the fluorescence flux normalized by the light absorbed) in the red and far-red peaks was computed. This quantifies the fluorescence emission efficiencies that are more directly linked to canopy function compared to SIF radiances. Fluorescence fluxes and yields were investigated in relation to tree age to infer new insights on the potential of those measurements in better describing ecosystem processes. The results showed that red fluorescence yield varies with stand age. Young stands exhibited a nearly twofold higher red fluorescence yield than mature forest plantations, while the far-red fluorescence yield remained constant. We interpreted this finding in a context of photosynthetic stomatal limitation in aging loblolly pine stands. Current and future satellite missions provide global datasets of SIF at coarse spatial resolution, resulting in intrapixel mixture effects, which could be a confounding factor for fluorescence signal interpretation. To mitigate this effect, we propose a surrogate of the fluorescence yield, namely the Canopy Cover Fluorescence Index (CCFI) that accounts for the spatial variability in canopy structure by exploiting the vegetation fractional cover. It was found that spatial aggregation tended to mask the effective relationships, while the CCFI was still able to maintain this link. This study is a first attempt in interpreting the fluorescence variability in aging forest stands and it may open new perspectives in understanding long-term forest dynamics in response to future climatic

  18. Effects of Dihydroartemisinin and Artemether on the Growth, Chlorophyll Fluorescence, and Extracellular Alkaline Phosphatase Activity of the Cyanobacterium Microcystis aeruginosa.

    Science.gov (United States)

    Wang, Shoubing; Xu, Ziran

    2016-01-01

    Increased eutrophication in the recent years has resulted in considerable research focus on identification of methods for preventing cyanobacterial blooms that are rapid and efficient. The objectives of this study were to investigate the effects of dihydroartemisinin and artemether on the growth of Microcystis aeruginosa and to elucidate its mode of action. Variations in cell density, chlorophyll a, soluble protein, malondialdehyde, extracellular alkaline phosphatase activity (APA), and chlorophyll fluorescence parameters (Fv/Fm, ΦPSII, ETR, rapid light curves, fast chlorophyll fluorescence curves on fluorescence intensity, and relative variable fluorescence) were evaluated by lab-cultured experiments. Our results demonstrated that both dihydroartemisinin and artemether inhibited the growth of M.aeruginosa by impairing the photosynthetic center in photosystem II and reducing extracellular APA, with a higher sensitivity exhibited toward artemether. The inhibitory effects of dihydroartemisinin on M.aeruginosa increased with concentration, and the maximum growth inhibitory rate was 42.17% at 24 mg·L-1 after 120h exposure, whereas it was 55.72% at 6 mg·L-1 artemetherafter 120h exposure. Moreover, the chlorophyll fluorescence was significantly inhibited (p<0.05) after 120h exposure to 12 and 24 mg·L-1 dihydroartemisinin. Furthermore, after 120h exposure to 6 mg·L-1 artemether, Fv/Fm, ΦPSII, ETR and rETRmax showed a significant decrease (p<0.01) from initial values of 0.490, 0.516, 17.333, and 104.800, respectively, to 0. One-way analysis of variance showed that 6 mg·L-1 artemether and 24 mg·L-1 dihydroartemisinin had significant inhibitory effects on extracellular APA (p<0.01). The results of this study would be useful to further studies to validate the feasibility of dihydroartemisinin and artemether treatment to inhibit overall cyanobacterial growth in water bodies, before this can be put into practice.

  19. Plant Chlorophyll fluorescence: active and passive measurements at canopy and leaf scales with different nitrogen treatments

    Science.gov (United States)

    Most studies assessing chlorophyll fluorescence (ChlF) have examined leaf responses to environmental stress conditions using active techniques. Alternatively, passive techniques are able to measure ChlF at both leaf and canopy scales. However, although the measurement principles of both techniques a...

  20. Study the effect of insecticide dimethoate on photosynthetic pigments and photosynthetic activity of pigeon pea: Laser-induced chlorophyll fluorescence spectroscopy.

    Science.gov (United States)

    Pandey, Jitendra Kumar; Dubey, Gunjan; Gopal, R

    2015-10-01

    Pigeon pea is one of the most important legume crops in India and dimethoate is a widely used insecticide in various crop plants. We studied the effect of dimethoate on growth and photosynthetic activity of pigeon pea plants over a short and long term exposure. Plant growth parameters, photosynthetic pigment content and chlorophyll fluorescence response of pigeon pea (Cajanus cajan L.) plants treated with various concentrations of the insecticide dimethoate (10, 20, 40 and 80 ppm) have been compared for 30 days at regular intervals of 10 days each. Laser induced chlorophyll fluorescence spectra and fluorescence-induction kinetics (FIK) curve of dimethoate treated pigeon pea plants were recorded after 10, 20 and 30 days of treatment. Fluorescence intensity ratio at the two fluorescence maxima (F685/F730) was calculated by evaluating curve-fitted parameters. The variable chlorophyll fluorescence decrease ratio (Rfd) was determined from the FIK curves. Our study revealed that after 10 days of treatment, 10 ppm of dimethoate showed stimulatory response whereas 20, 40 and 80 ppm of dimethoate showed inhibitory response for growth and photosynthetic activity of pigeon pea plants, but after 20 and 30 days of treatment all the tested concentrations of dimethoate became inhibitory. This study clearly shows that dimethoate is highly toxic to the pigeon pea plant, even at very low concentration (10 ppm), if used for a prolonged duration. Our study may thus be helpful in determining the optimal dose of dimethoate in agricultural practices. Copyright © 2014 Elsevier B.V. All rights reserved.

  1. Sun-induced chlorophyll fluorescence, photosynthesis, and light use efficiency of a soybean field from seasonally continuous measurements

    Science.gov (United States)

    Recent development of sun-induced chlorophyll fluorescence (SIF) technology is stimulating studies to remotely approximate canopy photosynthesis (measured as gross primary production, GPP). While multiple applications have advanced the empirical relationship between GPP and SIF, mechanistic understa...

  2. Diurnal Variability in Chlorophyll-a, Carotenoids, CDOM and SO42− Intensity of Offshore Seawater Detected by an Underwater Fluorescence-Raman Spectral System

    Science.gov (United States)

    Chen, Jing; Ye, Wangquan; Guo, Jinjia; Luo, Zhao; Li, Ying

    2016-01-01

    A newly developed integrated fluorescence-Raman spectral system (λex = 532 nm) for detecting Chlorophyll-a (chl-a), Chromophoric Dissolved Organic Matter (CDOM), carotenoids and SO42− in situ was used to successfully investigate the diurnal variability of all above. Simultaneously using the integration of fluorescence spectroscopy and Raman spectroscopy techniques provided comprehensive marine information due to the complementarity between the different excitation mechanisms and different selection rules. The investigation took place in offshore seawater of the Yellow Sea (36°05′40′′ N, 120°31′32′′ E) in October 2014. To detect chl-a, CDOM, carotenoids and SO42−, the fluorescence-Raman spectral system was deployed. It was found that troughs of chl-a and CDOM fluorescence signal intensity were observed during high tides, while the signal intensity showed high values with larger fluctuations during ebb-tide. Chl-a and carotenoids were influenced by solar radiation within a day cycle by different detection techniques, as well as displaying similar and synchronous tendency. CDOM fluorescence cause interference to the measurement of SO42−. To avoid such interference, the backup Raman spectroscopy system with λex = 785 nm was employed to detect SO42− concentration on the following day. The results demonstrated that the fluorescence-Raman spectral system has great potential in detection of chl-a, carotenoids, CDOM and SO42− in the ocean. PMID:27420071

  3. Diurnal Variability in Chlorophyll-a, Carotenoids, CDOM and SO42− Intensity of Offshore Seawater Detected by an Underwater Fluorescence-Raman Spectral System

    Directory of Open Access Journals (Sweden)

    Jing Chen

    2016-07-01

    Full Text Available A newly developed integrated fluorescence-Raman spectral system (λex = 532 nm for detecting Chlorophyll-a (chl-a, Chromophoric Dissolved Organic Matter (CDOM, carotenoids and SO42− in situ was used to successfully investigate the diurnal variability of all above. Simultaneously using the integration of fluorescence spectroscopy and Raman spectroscopy techniques provided comprehensive marine information due to the complementarity between the different excitation mechanisms and different selection rules. The investigation took place in offshore seawater of the Yellow Sea (36°05′40′′ N, 120°31′32′′ E in October 2014. To detect chl-a, CDOM, carotenoids and SO42−, the fluorescence-Raman spectral system was deployed. It was found that troughs of chl-a and CDOM fluorescence signal intensity were observed during high tides, while the signal intensity showed high values with larger fluctuations during ebb-tide. Chl-a and carotenoids were influenced by solar radiation within a day cycle by different detection techniques, as well as displaying similar and synchronous tendency. CDOM fluorescence cause interference to the measurement of SO42−. To avoid such interference, the backup Raman spectroscopy system with λex = 785 nm was employed to detect SO42− concentration on the following day. The results demonstrated that the fluorescence-Raman spectral system has great potential in detection of chl-a, carotenoids, CDOM and SO42− in the ocean.

  4. On Variability in Satellite Terrestrial Chlorophyll Fluorescence Measurements: Relationships with Phenology and Ecosystem-Atmosphere Carbon Exchange, Vegetation Structure, Clouds, and Sun-Satellite Geometry

    Science.gov (United States)

    Joiner, J.; Yoshida, Y.; Guanter, L.; Zhang, Y.; Vasilkov, A. P.; Schaefer, K. M.; Huemmrich, K. F.; Middleton, E.; Koehler, P.; Jung, M.; Tucker, C. J.; Lyapustin, A.; Wang, Y.; Frankenberg, C.; Berry, J. A.; Koster, R. D.; Reichle, R. H.; Lee, J. E.; Kawa, S. R.; Collatz, G. J.; Walker, G. K.; Van der Tol, C.

    2014-12-01

    Over the past several years, there have been several breakthroughs in our ability to detect the very small fluorescence emitted by chlorophyll in vegetation globally from space. There are now multiple instruments in space capable of measuring this signal at varying temporal and spatial resolutions. We will review the state-of-the-art with respect to these relatively new satellite measurements and ongoing studies that examine the relationships with photosynthesis. Now that we have a data record spanning more than seven years, we can examine variations due to seasonal carbon uptake, interannual variability, land-use changes, and water and temperature stress. In addition, we examine how clouds and satellite viewing geometry impact the signal. We compare and contrast these variations with those from popular vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), related to the potential photosynthesis as well as with measurements from flux tower gas exchange measurements and other model-based estimates of Global Primary Productivity (GPP). Vegetation fluorescence can be simulated in global vegetation models as well as with 1D canopy radiative transport models. We will describe how the satellite fluorescence data are being used to evaluate and potentially improve these models.

  5. Uptake of diuron and concomitant loss of photosynthetic activity in leaves as visualized by imaging the red chlorophyll fluorescence.

    Science.gov (United States)

    Lichtenthaler, Hartmut K; Langsdorf, Gabriele; Buschmann, Claus

    2013-10-01

    The principles of the chlorophyll (Chl) fluorescence induction kinetics (known as Kautsky effect) and their change by the photosystem II herbicide diuron are presented together with the Chl fluorescence emission spectra of a normal and diuron-inhibited leaf. By imaging the Chl fluorescence emission of green leaves the successive uptake of diuron and the concomitant loss of photosynthetic quantum conversion from the leaf base to the leaf tip are documented.

  6. Meta-analysis assessing potential of steady-state chlorophyll fluorescence for remote sensing detection of plant water, temperature and nitrogen stress

    Czech Academy of Sciences Publication Activity Database

    Ač, Alexander; Malenovský, Z.; Olejníčková, Julie; Gallé, A.; Rascher, U.; Mohammed, G.

    2015-01-01

    Roč. 168, oct (2015), s. 420-436 ISSN 0034-4257 R&D Projects: GA MŠk(CZ) LO1415 Institutional support: RVO:67179843 Keywords : steady-state chlorophyll fluorescence * passive sun-induced fluorescence * active laser-induced fluorescence * photosynthesis * stress * water * temperature * nitrogen * random-effects meta-analysis * FLEX satellite mission Subject RIV: EH - Ecology, Behaviour Impact factor: 5.881, year: 2015

  7. The chlorophyll a fluorescence induction pattern in chloroplasts upon repetitive single turnover excitations: Accumulation and function of QB-nonreducing centers

    NARCIS (Netherlands)

    Vredenberg, W.J.; Kasalicky, V.; Durchan, M.; Prasil, O.

    2006-01-01

    The increase of chlorophyll fluorescence yield in chloroplasts in a 12.5 Hz train of saturating single turnover flashes and the kinetics of fluorescence yield decay after the last flash have been analyzed. The approximate twofold increase in Fm relative to Fo, reached after 30-40 flashes, is

  8. Study of 660 nm laser-induced photoluminescence of chlorophyll-a and its applications

    International Nuclear Information System (INIS)

    Song, Y; Zhang, D X; Zhang, H J

    2007-01-01

    Based on the phenomenon of chlorophyll a photoluminescence, this paper introduces a new method to measure the chlorophyll a content, using 660nm laser diode as a new kind of light source to stimulate fluorescence as well as combining a fiber and spectrum technique. We analyze the characteristics of laser-induced fluorescence spectrum of chlorophyll a and then put forward the new method using two parameters, the relative fluorescence intensity and fluorescence intensity ratio F685/F735, to measure the chlorophyll a content in the water and green leaves respectively. The experimental results indicate that it is completely feasible to give a visual judgment for chlorophyll a content, according to the fluorescence emission spectrum of chlorophyll a. Subsequently, it is verified by three kinds of typical applications. All of these provide a new kind of light source to develop the chlorophyll a fluorometry and further give a technical foundation of on-spot monitoring the chlorophyll a content in the ocean or in green leaves

  9. Chlorophyll Fluorescence Sorting Method to Improve Quality of Capsicum Pepper Seed Lots Produced from Different Maturity Fruits

    NARCIS (Netherlands)

    Kenanoglu, B.B.; Demir, I.; Jalink, H.

    2013-01-01

    This work was conducted to investigate the efficacy of chlorophyll fluorescence (CF) sorting to improve seed germination, seedling emergence, and vigor of seeds produced from different maturity fruits of four different cultivars. Four harvest dates from each cultivar were evaluated by harvesting

  10. Chlorophyll fluorescence as a parameter for frost hardiness in winter wheat. A comparison with other hardiness parameters.

    NARCIS (Netherlands)

    Clement, JMAM; vanHasselt, PR

    1996-01-01

    Frost hardiness of winter wheat leaves (Triticum aestivum L. cv. Urban) was measured during an eight weeks hardening period using chlorophyll fluorescence. Determination of frost induced damage after freezing, measured as the decrease of photochemical capacity of photosystem II (F-V/F-M =

  11. Effect of carbon and nitrogen assimilation on chlorophyll fluorescence emission by the cyanobacterium Anacystis nidulans

    Energy Technology Data Exchange (ETDEWEB)

    Romero, J.M.; Lara, C. (Instituto de Bioquimica Vegetal y Fotosintesis, Univ. de Sevilla y CSIC, Sevilla (ES)); Sivak, M.N. (Dept. of Biochemistry, Michigan State Univ., East Lansing (US))

    1992-01-01

    O{sub 2} evolution and chlorophyll A fluorescence emission have been monitored in intact cells of the cyanobacterium Anacystis nidulans 1402-1 to study the influence of carbon and nitrogen assimilation on the operation of the photosynthetic apparatus. The pattern of fluorescence induction in dark-adapted cyanobacterial cells was different from that of higher plants. Cyanobacteria undergo large, rapid state transitions upon illumination, which lead to marked changes in the fluorescence yield, complicating the estimation of quenching coefficients. The Kautsky effect was not evident, although it could be masked by a state II-state I transition, upon illumination with actinic light. The use of inhibitors of carbon assimilation such as D,L-glyceraldehyde or iodoacetamide allowed us to relate changes in variable fluorescence to active CO{sub 2} fixation. Ammonium, but not nitrate, induced non-photochemical fluorescence quenching, in agreement with a previous report on green algae, indicative of an ammonium-induced state i transition. (au).

  12. New evidence for primordial action site of Fluazifop-P-butyl on Acanthospermum hispidum seedlings: From the effects on chlorophyll fluorescence characteristics and histological observation.

    Science.gov (United States)

    Shang, Yuhong; Yang, Congjun; Liu, Zhihang; Song, Jiqing; Li, Pingliang; Li, Lingxu; Zhou, Fei; Xin, Hua; Wan, Fanghao; Matsumoto, Hiroshi; Luo, Xiaoyong

    2017-10-01

    Acanthospermum hispidum DC, an Asteraceae weed species, was very susceptible to fluazifop-P-butyl, but tolerant to other aryloxyphenoxypropionate herbicides, such as haloxyfop-P-methyl. However, other Asteraceae weeds including Bidens pilosa were all tolerant to fluazifop-P-butyl. Membrane lipid peroxidation by increasing the levels of reactive oxygen species (ROS) was proposed as an action mechanism of fluazifop-P-butyl in A. hispidum. To further clarify the primordial action site of fluazifop-P-butyl in this species, the effects on chlorophyll fluorescence characteristics and cytohistology of apical meristems were studied. Chlorophyll fluorescence characteristics (CFC) in sensitive A. hispidum seedlings were markedly affected by 10μM fluazifop-P-butyl, with the dark fluorescence yield (Fo), maximal fluorescence yield (Fm), maximal PS II quantum yield (Fv/Fm), effective photosystem II (PS II) quantum yield [Y(II)], and quantum yield of regulated energy dissipation [Y(NPQ)] declining, quantum yield of nonregulated energy dissipation [Y(NO)] rising, but these measures were not affected in Bidens pilosa. The effects of fluazifop-P-butyl on chlorophyll fluorescence properties were observed on the growing point before the mature leaves by about 4-6h. Haloxyfop-P-methyl, a control herbicide, had no effects on CFC of either A. hispidum or B. pilosa. In addition, damage to apical meristem cells of A. hispidum was observed at 6 HAT prior to changes in chlorophyll fluorescence parameters suggesting that the primary action site of fluazifop-P-butyl in this species is in the apical meristem and the effects on CFC may be the results of secondary action. Copyright © 2017 Elsevier Inc. All rights reserved.

  13. DART: Recent Advances in Remote Sensing Data Modeling With Atmosphere, Polarization, and Chlorophyll Fluorescence

    Science.gov (United States)

    Gastellu-Etchegorry, Jean-Phil; Lauret, Nicolas; Yin, Tiangang; Landier, Lucas; Kallel, Abdelaziz; Malenovsky, Zbynek; Bitar, Ahmad Al; Aval, Josselin; Benhmida, Sahar; Qi, Jianbo; hide

    2017-01-01

    To better understand the life-essential cycles and processes of our planet and to further develop remote sensing (RS) technology, there is an increasing need for models that simulate the radiative budget (RB) and RS acquisitions of urban and natural landscapes using physical approaches and considering the three-dimensional (3-D) architecture of Earth surfaces. Discrete anisotropic radiative transfer (DART) is one of the most comprehensive physically based 3-D models of Earth-atmosphere radiative transfer, covering the spectral domain from ultraviolet to thermal infrared wavelengths. It simulates the optical 3-DRB and optical signals of proximal, aerial, and satellite imaging spectrometers and laser scanners, for any urban and/or natural landscapes and for any experimental and instrumental configurations. It is freely available for research and teaching activities. In this paper, we briefly introduce DART theory and present recent advances in simulated sensors (LiDAR and cameras with finite field of view) and modeling mechanisms (atmosphere, specular reflectance with polarization and chlorophyll fluorescence). A case study demonstrating a novel application of DART to investigate urban landscapes is also presented.

  14. Detection of photosynthetic performance of Stipa bungeana seedlings under climatic change using chlorophyll fluorescence imaging

    Directory of Open Access Journals (Sweden)

    Xiliang eSong

    2016-01-01

    Full Text Available In this study, the impact of future climate change on photosynthetic efficiency as well as energy partitioning in the Stipa bungeana was investigated by using chlorophyll fluorescence imaging (CFI technique. Two thermal regimes (room temperature, T0: 23.0/17.0℃; High temperature, T6: 29.0/23.0℃ and three water conditions (Control, W0; Water deficit, W-30; excess precipitation, W+30 were set up in artificial control chambers. The results showed that excess precipitation had no significant effect on chlorophyll fluorescence parameters, while water deficit decreased the maximal quantum yield of photosystem II (PSII photochemistry for the dark-adapted state (Fv/Fm by 16.7%, with no large change in maximal quantum yield of PSII photochemistry for the light-adapted state (FV'/FM' and coefficient of the photochemical quenching (qP at T0 condition. Under T6 condition, high temperature offset the negative effect of water deficit on Fv/Fm and enhanced the positive effect of excess precipitation on Fv/Fm, Fv'/Fm' and qP, the values of which all increased. This indicates that the temperature higher by 6 ℃ will be beneficial to the photosynthetic performance of S. bungeana. Spatial changes of photosynthetic performance were monitored in three areas of interest (AOIs located on the bottom, middle and upper position of leaf. Chlorophyll fluorescence images (Fv/Fm, actual quantum yield of PSII photochemistry for the light-adapted state (ΦPSII, quantum yield of nonregulated energy dissipation for the light-adapted state (ΦNO at T0 condition, and ΦPSII at T6 condition showed a large spatial variation, with greater value of ΦNO and lower values of Fv/Fm and ΦPSII in the upper position of leaves. Moreover, there was a closer relationship between ΦPSII and ΦNO, suggesting that the energy dissipation by non-regulated quenching mechanisms played a dominant role in the yield of PSII photochemistry. It was also found that, among all measured fluorescence

  15. Water relation, leaf gas exchange and chlorophyll a fluorescence imaging of soybean leaves infected with Colletotrichum truncatum.

    Science.gov (United States)

    Dias, Carla Silva; Araujo, Leonardo; Alves Chaves, Joicy Aparecida; DaMatta, Fábio M; Rodrigues, Fabrício A

    2018-06-01

    Considering the potential of anthracnose to decrease soybean yield and the need to gain more information regarding its effect on soybean physiology, the present study performed an in-depth analysis of the photosynthetic performance of soybean leaflets challenged with Colletotrichum truncatum by combining chlorophyll a fluorescence images with gas-exchange measurements and photosynthetic pigment pools. There were no significant differences between non-inoculated and inoculated plants in leaf water potential, apparent hydraulic conductance, net CO 2 assimilation rate, stomatal conductance to water vapor and transpiration rate. For internal CO 2 concentration, significant difference between non-inoculated and inoculated plants occurred only at 36 h after inoculation. Reductions in the values of the chlorophyll a fluorescence parameters [initial fluorescence (F 0 ), maximal fluorescence (F m ), maximal photosystem II quantum yield (F v /F m ), quantum yield of regulated energy dissipation (Y(NPQ))] and increases in effective PS II quantum yield (Y(II)), quantum yield of non-regulated energy dissipation Y(NO) and photochemical quenching coefficient (q P ) were noticed on the necrotic vein tissue in contrast to the surrounding leaf tissue. It appears that the impact of the infection by C. truncatum on the photosynthetic performance of the leaflets was minimal considering the preference of the fungus to colonize the veins. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

  16. Remote sensing of chlorophyll a fluorescence of vegetation canopies. 1. Near and far field measurement techniques

    International Nuclear Information System (INIS)

    Cecchi, G.; Mazzinghi, P.; Pantani, L.; Valentini, R.; Tirelli, D.; De Angelis, P.

    1994-01-01

    This article presents instruments and techniques, used in several vegetation monitoring experiments. Simultaneous monitoring was performed with different approaches, including fluorescence lidar and passive remote sensing, leaf level reflectance, and laser fluorimetry, and compared with physiological measurements. Most of the instrumentation described was designed and built for this application. Experiments were carried out in the laboratory and in the field, to investigate the relationship between chlorophyll fluorescence spectra and plant ecophysiology. Remote sensing, spectroscopy, and ecophysiology data were then collected by an intensive research team, joining different experiences and working in national and international projects

  17. Method 445.0 In Vitro Determination of Chlorophyll a and Pheophytin ain Marine and Freshwater Algae by Fluorescence

    Science.gov (United States)

    This method provides a procedure for low level determination of chlorophyll a (chl a) and its magnesium free derivative, pheophytin a (pheo a), in marine and freshwater phytoplankton using fluorescence detection.(1,2) Phaeophorbides present in the sample are determined collective...

  18. Chlorophyll fluorescence is a rigorous, high throughput tool to analyze the impacts of genotype, species, and stress on plant and ecosystem productivity

    Science.gov (United States)

    Ewers, B. E.; Pleban, J. R.; Aston, T.; Beverly, D.; Speckman, H. N.; Hosseini, A.; Bretfeld, M.; Edwards, C.; Yarkhunova, Y.; Weinig, C.; Mackay, D. S.

    2017-12-01

    Abiotic and biotic stresses reduce plant productivity, yet high-throughput characterization of plant responses across genotypes, species and stress conditions are limited by both instrumentation and data analysis techniques. Recent developments in chlorophyll a fluorescence measurement at leaf to landscape scales could improve our predictive understanding of plants response to stressors. We analyzed the interaction of species and stress across two crop types, five gymnosperm and two angiosperm tree species from boreal and montane forests, grasses, forbs and shrubs from sagebrush steppe, and 30 tree species from seasonally wet tropical forest. We also analyzed chlorophyll fluorescence and gas exchange data from twelve Brassica rapa crop accessions and 120 recombinant inbred lines to investigate phenotypic responses to drought. These data represent more than 10,000 measurements of fluorescence and allow us to answer two questions 1) are the measurements from high-throughput, hand held and drone-mounted instruments quantitatively similar to lower throughput camera and gas exchange mounted instruments and 2) do the measurements find differences in genotypic, species and environmental stress on plants? We found through regression that the high and low throughput instruments agreed across both individual chlorophyll fluorescence components and calculated ratios and were not different from a 1:1 relationship with correlation greater than 0.9. We used hierarchical Bayesian modeling to test the second question. We found a linear relationship between the fluorescence-derived quantum yield of PSII and the quantum yield of CO2 assimilation from gas-exchange, with a slope of ca. 0.1 indicating that the efficiency of the entire photosynthetic process was about 10% of PSII across genotypes, species and drought stress. Posterior estimates of quantum yield revealed that drought-treatment, genotype and species differences were preserved when accounting for measurement uncertainty

  19. THE USE OF CHLOROPHYLL FLUORESCENCE «a» FOR BIOTESTING OF THE AQUATIC ENVIRONMENT

    Directory of Open Access Journals (Sweden)

    V. A. Osipov

    2012-01-01

    Full Text Available The impact on marine algae Thalassiosiraweisflogii, Pseudo-nitzshiadelicatissima of copper sulfate, chloride of mercury, methylmercury were studied. Found a sharp increase sensitivity FS 2 of microalgae cultures and natural phytoplankton to salts of heavy metals in the conditions of the light of the stress that is associated with inhibition of protein synthetic reactions. Conclusions are made about the prospects of the use of fluorescence of chlorophyll "a" for biotesting.

  20. On the polyphasic quenching kinetics of chlorophyll a fluorescence in algae after light pulses of variable length

    Czech Academy of Sciences Publication Activity Database

    Vredenberg, W.; Prášil, Ondřej

    2013-01-01

    Roč. 117, 1-3 (2013), s. 321-337 ISSN 0166-8595 R&D Projects: GA MŠk(CZ) ED2.1.00/03.0110 Institutional support: RVO:61388971 Keywords : Chlorophyll a fluorescence * Photosystem II * Quenching kinetics Subject RIV: EE - Microbiology, Virology Impact factor: 3.185, year: 2013

  1. Characterization of the alterations of the chlorophyll a fluorescence induction curve after addition of Photosystem II inhibiting herbicides

    NARCIS (Netherlands)

    Hiraki, M.; Rensen, van J.J.S.; Vredenberg, W.J.; Wakabayashi, K.

    2003-01-01

    The effects of Photosystem II inhibiting herbicides, 3-(3,4-dichlorophenyl)-1,1-dimethylurea (diuron), atrazine and two novel 2-benzylamino-1,3,5-triazine compounds, on photosynthetic oxygen evolution and chlorophyll a fluorescence induction were measured in thylakoids isolated from Chenopodium

  2. Temporal variability in chlorophyll fluorescence of back-reef corals in Ofu, American Samoa

    Science.gov (United States)

    Piniak, G.A.; Brown, E.K.

    2009-01-01

    Change in the yield of chlorophyll a fluorescence is a common indicator of thermal stress in corals. The present study reports temporal variability in quantum yield measurements for 10 coral species in Ofu, American Samoa - a place known to experience elevated and variable seawater temperatures. In winter, the zooxanthellae generally had higher dark-adapted maximum quantum yield (F v/Fm), higher light- adapted effective quantum yield (??F/F'm), and lower relative electron transport rates (rETR) than in the summer. Temporal changes appeared unrelated to the expected bleaching sensitivity of corals. All species surveyed, with the exception of Montipora grisea, demonstrated significant temporal changes in the three fluorescence parameters. Fluorescence responses were influenced by the microhabitat - temporal differences in fluorescence parameters were usually observed in the habitat with a more variable temperature regime (pool 300), while differences in Fv/Fm between species were observed only in the more environmentally stable habitat (pool 400). Such species-specific responses and microhabitat variability should be considered when attempting to determine whether observed in situ changes are normal seasonal changes or early signs of bleaching. ?? 2009 Marine Biological Laboratory.

  3. CHLOROPHYLL a FLUORESCENCE ANALYSIS IN FORESTS

    Directory of Open Access Journals (Sweden)

    M. Pollastrini

    2016-03-01

    Full Text Available A European-wide assessment of chlorophyll a fluorescence (ChlF, prompt fluorescence on dark-adapted samples parameters in forest ecosystems was carried out in the years 2012-2013, within the 7FP FunDivEUROPE project. A total of 1596 trees growing in 209 stands distributed in six countries, from Mediterranean to boreal sites, were sampled. This paper shows the applicability of the ChlF in forest ecology surveys, the protocols adopted for leaf sampling and ChlF measurements, the variability of the ChlF parameters within and between trees, their dependence to environmental factors and the relationships with other functional leaf traits. The most relevant findings were as follows: (i The least variable ChlF parameter within and between the trees was the maximum quantum yield of primary photochemistry (FV/FM, whereas the performance indices (PIABS and PITOT showed the highest variability; (ii for a given tree, the ChlF parameters measured at two heights of the crown (top and bottom leaves were correlated and, in coniferous species, the ChlF parameters were correlated between different needle age classes (from the current year and previous year; (iii the ChlF parameters showed a geographical pattern, and the photochemical performance of the forest trees was higher in central Europe than in the edge sites (northernmost and southernmost; and (iv ChlF parameters showed different sensitivity to specific environmental factors: FV/FM increased with the increase of the leaf area index of stands and soil fertility; ΔVIP was reduced under high temperature and drought. The photochemical responses of forest tree species, analyzed with ChlF parameters, were influenced by the ecology of the trees (i.e. their functional groups, continental distribution, successional status, etc., tree species’ richness and composition of the stands. Our results support the applicability and usefulness of the ChlF in forest monitoring investigations on a large spatial scale and

  4. Remote sensing vegetation status by laser-induced fluorescence

    International Nuclear Information System (INIS)

    Günther, K.P.; Dahn, H.G.; Lüdeker, W.

    1994-01-01

    In November 1989 the EUREKA project LASFLEUR (EU 380) started as an European research effort to investigate the future application of far-field laser-induced plant fluorescence for synoptic, airborne environmental monitoring of vegetation. This report includes a brief introduction in a theoretically approach for the laser-induced fluorescence signals of leaves and their spectral and radiometric behaviour. In addition, a detailed description of the design and realization of the second generation of the far-field fluorescence lidar (DLidaR-2) is given with special regard to the optical and electronical setup, followed by a short explanation of the data processing. The main objectives of the far field measurements are to demonstrate the link between laser-induced fluorescence data and plant physiology and to show the reliability of remote single shot lidar measurements. The data sets include the typical daily cycles of the fluorescence for different global irradiation. As expected from biophysical models, the remotely sensed chlorophyll fluorescence is highly correlated with the carbon fixation rate, while the fluorescence ratio F685 / F730 is only dependent on the chlorophyll concentration. Drought stress measurement of evergreen oaks Quercus pubescens confirm the findings of healthy plants with regard to the fluorescence ratio F685 / F730 while the fluorescence signals of stressed plants show a different behavior than nonstressed plants. Additionally, the corresponding physiological data (porometer and PAM data) are presented. (author)

  5. Chlorophyll a fluorescence to phenotype wheat genotypes for heat tolerance

    DEFF Research Database (Denmark)

    Sharma, Dew Kumari; Andersen, Sven Bode; Ottosen, Carl-Otto

    In prospects of global climate change, heat stress is a rising constraint for the productivity of wheat (Triticum aestivum L.). It is a heat-susceptible crop beyond 17-23oC temperature throughout its phenological stages, flowering phase being the most sensitive stage. Chlorophyll a fluorescence...... parameter, maximum quantum yield efficiency of PSII (Fv/Fm) is used as a physiological marker for early stress detection in PSII in plants. We established a reproducible protocol to measure response of wheat genotypes to high temperature based on Fv/Fm. The heat treatment of 40°C in 300 µmol m-2s-1 PAR...... enabled the identification of contrasting wheat genotypes that can be used to study the genetic and physiological nature of heat stress tolerance to dissect quantitative traits into simpler and more heritable traits....

  6. High resolution measurements of solar induced chlorophyll fluorescence in the Fraunhofer oxigen bands

    Science.gov (United States)

    Mazzoni, M.; Agati, G.; Cecchi, G.; Toci, G.; Mazzinghi, P.

    2017-11-01

    Spectra of solar radiance reflected by leaves close to the Fraunhofer bands show the net contribution of chlorophyll fluorescence emission which adds to the reflected solar spectra. In a laboratory experiment, a low stray light, high resolution, 0.85 m double monochromator was used to filter radiation living leaves still attached to the plant in correspondence of the 687 nm and 760 nm O2 absorption bands. Reference spectra from a non fluorescent white reference were also acquired. Acquisition was performed by a Microchannel plate (MCP) intensified diode array with 512 elements. A fit of the spectral data outside the absorption lines allowed to retrieve the spectral base-line as a function of wavelength for the reference panel and the leaf. Reflectance functions were determined extending the Plascyck equation system to all the resolved lines of the oxygen absorption bands and using the base-lines for the continuum values. Fluorescence was deduced from the same equation system, using both the measured leaf and reference radiance spectra and the leaf reflectance fitting function.

  7. Improvement of Photosynthesis by Sub1 QTL in Rice Under Submergence: Probed by Chlorophyll Fluorescence OJIP Transients

    Directory of Open Access Journals (Sweden)

    Panda Debabrata

    2011-09-01

    Full Text Available The influence of submergence on the photosynthetic activity in rice plants either possessing or not possessing Sub1 QTL i.e. Swarna and Swarna Sub1 cultivars (cv. were evaluated under simulated complete submergence. The leaf photosynthetic rate and stomatal conductance decreased in both the cv. during the progression of submergence as compared to control plant but significant varietal differences was observed after 1 day (d of submergence. Submergence also alters the photo-system (PS II activity, as reflected in a decrease in the values of Fo, Fm and the Fv/Fm ratio and degradation of chlorophyll, more in Swarna than that of Swarna Sub1. Under complete submergence the shape of the OJIP transient also changed in rice leaves with decrease in maximal fluorescence (P=Fm intensity, resulted lowering of variable fluorescence levels. The decrease was more pronounced in Swarna compared to the Swarna Sub1 cv. Thus, Swarna Sub1 improves photosynthetic activity showing more photosynthetic rate compared to Swarna under submergence because, of less degradation of chlorophyll, higher stomatal conductance, and efficient PS II activity.

  8. [Effects of groundwater level on chlorophyll fluorescence characteristics of Tamarix hispida in lower reaches of Tarim River].

    Science.gov (United States)

    Zhu, Cheng-gang; Li, Wei-hong; Ma, Jian-xin; Ma, Xiao-dong

    2010-07-01

    Based on the monitoring data of groundwater level at the typical sections in lower reaches of Tarim River, three survey plots nearby the ecological monitoring wells with groundwater depths > 6 m were selected to investigate the chlorophyll fluorescence characteristics of Tamarix hispida and its photosynthetic activity of PSII under effects of different groundwater depths. With increasing groundwater depth, the chlorophyll fluorescence parameters such as actual photochemical efficiency of PSII in the light (phi(PSII)), electron transport rate (ETR), and photochemistry quenching (q(p)) of T. hispida decreased, while the non-photochemistry quenching (q(N), NPQ) and the yield for dissipation by down-regulation (Y(NPQ)) increased remarkably, and the maximal photochemical efficiency of PSII (Fv/Fm) maintained an optimum value. All the results suggested that the PSII photosynthetic activity of T. hispida under drought stress declined with increasing groundwater depth, and the greater excess energy could result in more risk of photo-inhibition. However, the good adaptability and drought tolerance of T. hispida could make its PSII not seriously damaged, though the drought stress actually existed.

  9. Delayed chlorophyll a fluorescence, MR 820, and gas exchange changes in perennial ryegrass under salt stress

    Energy Technology Data Exchange (ETDEWEB)

    Dąbrowski, P., E-mail: piotr_dabrowski@sggw.pl [Department of Environmental Improvement, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Kalaji, M.H., E-mail: hazem@kalaji.pl [Department of Plant Physiology, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); SI TECHNOLOGY Sp. z o. o., Górczewska 226C/26, 01-460 Warsaw (Poland); Baczewska, A.H., E-mail: a.baczewska@obpan.pl [Polish Academy of Sciences Botanical Garden-Center for Biological Diversity Conservation in Powsin, 2 Prawdziwka St., 02-973 Warsaw (Poland); Pawluśkiewicz, B. [Department of Environmental Improvement, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Mastalerczuk, G., E-mail: grazyna_mastalerczuk@sggw.pl [Department of Agronomy, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Borawska-Jarmułowicz, B., E-mail: barbara_borawska_jarmulowicz@sggw.pl [Department of Agronomy, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Paunov, M. [Department Biophysics and Radiobiology, St. Kl. Ohridski Sofia University, 8 Dragan Tsankov Blvd., 1164 Sofia (Bulgaria); Goltsev, V., E-mail: goltsev@biofac.uni-sofia.bg [Department Biophysics and Radiobiology, St. Kl. Ohridski Sofia University, 8 Dragan Tsankov Blvd., 1164 Sofia (Bulgaria)

    2017-03-15

    Perennial ryegrass (Lolium perenne L.) is one of the more popular grass species in Europe. It is commonly used for starting lawns in urban areas, where plant growth is limited by many environmental conditions. The contamination of soils by salt is one of the major problems in urban green areas, as well as in natural areas. The basic aim of this study is to provide a detailed in vivo analysis of the changes in the delayed chlorophyll fluorescence and MR 820 signals (induced by salt stress) of two lawn varieties of perennial ryegrass, and to find out if there are correlations between these parameters and gas exchange. Two lawn varieties of Lolium perenne L. were used: Nira and Roadrunner. Salinization was performed at 8 weeks after sowing by adding NaCl in water solution (0, 0.15, and 0.30 M). There were 8 terms of measurement: 0 h, 24 h, 48 h, 96 h, 144 h, 192 h, 240 h, and 288 h after salinization. Our results showed that delayed fluorescence is a tool that can bring completely new opportunities for detecting stress in plants caused by salt. Our work allowed us to identify various limitation patterns in the photosynthetic efficiency of perennial ryegrass lawn varieties grown under salt stress conditions. Significant differences between the two tested varieties in response to salt stress were confirmed.

  10. Impact of 3D Canopy Structure on Remote Sensing Vegetation Index and Solar Induced Chlorophyll Fluorescence

    Science.gov (United States)

    Zeng, Y.; Berry, J. A.; Jing, L.; Qinhuo, L.

    2017-12-01

    Terrestrial ecosystem plays a critical role in removing CO2 from atmosphere by photosynthesis. Remote sensing provides a possible way to monitor the Gross Primary Production (GPP) at the global scale. Vegetation Indices (VI), e.g., NDVI and NIRv, and Solar Induced Fluorescence (SIF) have been widely used as a proxy for GPP, while the impact of 3D canopy structure on VI and SIF has not be comprehensively studied yet. In this research, firstly, a unified radiative transfer model for visible/near-infrared reflectance and solar induced chlorophyll fluorescence has been developed based on recollision probability and directional escape probability. Then, the impact of view angles, solar angles, weather conditions, leaf area index, and multi-layer leaf angle distribution (LAD) on VI and SIF has been studied. Results suggest that canopy structure plays a critical role in distorting pixel-scale remote sensing signal from leaf-scale scattering. In thin canopy, LAD affects both of the remote sensing estimated GPP and real GPP, while in dense canopy, SIF variations are mainly due to canopy structure, instead of just due to physiology. At the microscale, leaf angle reflects the plant strategy to light on the photosynthesis efficiency, and at the macroscale, a priori knowledge of leaf angle distribution for specific species can improve the global GPP estimation by remote sensing.

  11. Delayed chlorophyll a fluorescence, MR 820, and gas exchange changes in perennial ryegrass under salt stress

    International Nuclear Information System (INIS)

    Dąbrowski, P.; Kalaji, M.H.; Baczewska, A.H.; Pawluśkiewicz, B.; Mastalerczuk, G.; Borawska-Jarmułowicz, B.; Paunov, M.; Goltsev, V.

    2017-01-01

    Perennial ryegrass (Lolium perenne L.) is one of the more popular grass species in Europe. It is commonly used for starting lawns in urban areas, where plant growth is limited by many environmental conditions. The contamination of soils by salt is one of the major problems in urban green areas, as well as in natural areas. The basic aim of this study is to provide a detailed in vivo analysis of the changes in the delayed chlorophyll fluorescence and MR 820 signals (induced by salt stress) of two lawn varieties of perennial ryegrass, and to find out if there are correlations between these parameters and gas exchange. Two lawn varieties of Lolium perenne L. were used: Nira and Roadrunner. Salinization was performed at 8 weeks after sowing by adding NaCl in water solution (0, 0.15, and 0.30 M). There were 8 terms of measurement: 0 h, 24 h, 48 h, 96 h, 144 h, 192 h, 240 h, and 288 h after salinization. Our results showed that delayed fluorescence is a tool that can bring completely new opportunities for detecting stress in plants caused by salt. Our work allowed us to identify various limitation patterns in the photosynthetic efficiency of perennial ryegrass lawn varieties grown under salt stress conditions. Significant differences between the two tested varieties in response to salt stress were confirmed.

  12. Oxygen transmittance correction for solar-induced chlorophyll fluorescence measured on proximal sensing: application to the NASA-GSFC fusion tower

    Science.gov (United States)

    Since oxygen (O2) absorption of light becomes more pronounced at higher pressure levels, even a few meters distance between the target and the sensor can strongly affect canopy leaving Solar-Induced chlorophyll Fluorescence (SIF) retrievals. This study was conducted to quantify the consequent error ...

  13. PhotoSpec - Ground-based Remote Sensing of Solar-Induced Chlorophyll Fluorescence: First Results

    Science.gov (United States)

    Grossmann, K.; Magney, T. S.; Frankenberg, C.; Seibt, U.; Pivovaroff, A. L.; Hurlock, S. C.; Stutz, J.

    2016-12-01

    Solar-Induced Chlorophyll Fluorescence (SIF) emitted from vegetation can be used as a proxy for photosynthetic activity and is observable on a global scale from space. However, many issues on a leaf-to-canopy scale remain poorly understood, such as influences on the SIF signal from environmental conditions, water stress, or radiation. We have developed a novel ground-based spectrometer system for measuring SIF from natural ecosystems. The instrumental set-up, requirements, and measurement technique are based on decades of experience using Differential Optical Absorption Spectroscopy (DOAS), an established method to measure atmospheric trace gases. The instrument consists of three thermally stabilized commercial spectrometers that are linked to a 2D scanning telescope unit via optical fiber bundles, and also includes a commercial photosynthetic active radiation (PAR) sensor. The spectrometers cover a SIF retrieval wavelength range at high spectral resolution (670 - 780 nm, 0.1 nm FWHM), and also provide moderate resolution spectra (400 - 800 nm, 1.5 nm FWHM) to retrieve vegetation indices and the photochemical reflectance index (PRI). We report on results of the first continuous field measurements of this novel system at Stunt Ranch Santa Monica Mountains UC Reserve, where the PhotoSpec instrument was monitoring SIF of four native Californian shrubland species with different adaptations to seasonal summer drought. We report on the correlation with CO2 fluxes over both the growing season and the hot summer period in 2016. We also show detailed measurements of the diurnal cycle of the SIF signal of single broad leaves, as well as dark-light transitions, under controlled experimental conditions. In addition to demonstrating the instrumental set-up, retrieval algorithm, and instrument performance, our results illustrate that SIF measurements at the leaf to ecosystem scale are needed to understand and interpret the SIF signals retrieved at larger scales.

  14. Time-resolved interaction investigations of carbocyanine dyes and chlorophyll a in solution

    International Nuclear Information System (INIS)

    Feller, K.H.; Fassler, D.

    1983-01-01

    Using a Nd:YAG laser/streak camera system of 30 ps time resolution the quenching of the fluorescence of the carbocyanine dye ICC by chlorophyll a in methanolic solution was investigated. The fluorescence lifetime of ICC decreased within the chlorophyll concentration range 0 - 9x10 - 5 mol/l from 170 ps to 135 ps. The observed very effective fluorescence quenching process suggests that the formation of heteroaggregates from ICC and chlorophyll is responsible for the rapid energy transfer. (author)

  15. Global Monitoring of Terrestrial Chlorophyll Fluorescence from Moderate-spectral-resolution Near-infrared Satellite Measurements: Methodology, Simulations, and Application to GOME-2

    Science.gov (United States)

    Joiner, J.; Gaunter, L.; Lindstrot, R.; Voigt, M.; Vasilkov, A. P.; Middleton, E. M.; Huemmrich, K. F.; Yoshida, Y.; Frankenberg, C.

    2013-01-01

    Globally mapped terrestrial chlorophyll fluorescence retrievals are of high interest because they can provide information on the functional status of vegetation including light-use efficiency and global primary productivity that can be used for global carbon cycle modeling and agricultural applications. Previous satellite retrievals of fluorescence have relied solely upon the filling-in of solar Fraunhofer lines that are not significantly affected by atmospheric absorption. Although these measurements provide near-global coverage on a monthly basis, they suffer from relatively low precision and sparse spatial sampling. Here, we describe a new methodology to retrieve global far-red fluorescence information; we use hyperspectral data with a simplified radiative transfer model to disentangle the spectral signatures of three basic components: atmospheric absorption, surface reflectance, and fluorescence radiance. An empirically based principal component analysis approach is employed, primarily using cloudy data over ocean, to model and solve for the atmospheric absorption. Through detailed simulations, we demonstrate the feasibility of the approach and show that moderate-spectral-resolution measurements with a relatively high signal-to-noise ratio can be used to retrieve far-red fluorescence information with good precision and accuracy. The method is then applied to data from the Global Ozone Monitoring Instrument 2 (GOME-2). The GOME-2 fluorescence retrievals display similar spatial structure as compared with those from a simpler technique applied to the Greenhouse gases Observing SATellite (GOSAT). GOME-2 enables global mapping of far-red fluorescence with higher precision over smaller spatial and temporal scales than is possible with GOSAT. Near-global coverage is provided within a few days. We are able to show clearly for the first time physically plausible variations in fluorescence over the course of a single month at a spatial resolution of 0.5 deg × 0.5 deg

  16. Generation of fluorescence quenchers from the triplet states of chlorophylls in the major light-harvesting complex II from green plants

    NARCIS (Netherlands)

    Barzda, V.; Vengris, M.; Valkunas, L.; van Amerongen, H.; van Grondelle, R.

    2000-01-01

    Laser flash-induced changes of the fluorescence yield were studied in aggregates of light-harvesting complex II (LHCII) on a time scale ranging from microseconds to seconds. Carotenoid (Car) and chlorophyll (Chl) triplet states, decaying with lifetimes of several microseconds and hundreds of

  17. Effects of space environment on chlorophyll fluorescence and photosynthesis characteristics of wheat

    International Nuclear Information System (INIS)

    Lu Li; Lv Jinyin; Gong Qingzhu; Gao Junfeng

    2006-01-01

    The effects of the space environment on the chlorophyll fluorescence parameters and photosynthesis characteristics of wheat cultivars, Xinong 1043 M1 and Shaan253 M 1 , were studied. The results showed that the decrement of contents of PS II primary photochemical efficiency (F v /F m ), potential activity (F v /F 0 ), photochemical quenching coefficient (qP) and photosynthesis rate (Pn) were less than that of control, increment of non-photochemical quenching coefficient (qN) were more than that of control. The results suggested that photosynthetic apparatus were damaged, photosynthetic electron transport, photosynthetic primary reaction were inhibited, rate of photosynthesis decreased and growth of M 1 plant were retarded, which leading to thousand kernel weights decreased. (authors)

  18. Fluorescência e teores de clorofilas em abacaxizeiro cv. pérola submetido a diferentes concentrações de sulfato de amônio Fluorescence and levels of chlorophyll in pineapple plants cv. perola submitted to different concentration of ammonium sulphate

    Directory of Open Access Journals (Sweden)

    Darlene Ana de Paula Vieira

    2010-06-01

    Full Text Available O presente trabalho teve como objetivo a análise da emissão da fluorescência da clorofila a e dos teores de clorofilas em plantas de Ananas comosus (L. Merril cv pérola, cultivadas em casa de vegetação, submetidas a quatro concentrações de nitrogênio por adição ou não de sulfato de amônio, de acordo com os seguintes tratamentos: Tº= 0 T1/2 = 15; T1 = 30; e T2 = 60 mg/kg solo. As determinações de fluorescência mínima (F0, máxima (Fm, variável (Fv, terminal (Ft e da eficiência fotoquímica máxima (Fv/Fm de folhas adaptadas ao escuro foram realizadas ao longo do dia, aos cinco dias após a segunda aplicação de sulfato de amônio, efetuada 120 dias após o transplantio. A adição de sulfato de amônio afetou a fluorescência variável e a máxima, mas não afetou a fluorescência mínima, a terminal nem a eficiência fotoquímica. Houve diferenças significativas entre os valores das variáveis da fluorescência ao longo do dia em que foram feitas as leituras. Houve diferenças nos teores de clorofilas foliares, em função das concentrações de sulfato de amônio aplicadas, com aumento para clorofila a e para a relação clorofila a/b, mas não para clorofila b.The present research aimed to analyze chlorophyll a fluorescence emission as well as chlorophyll levels in Ananas comosus (L. Merril cv Pérola grown under greenhouse conditions and submitted to four concentration of nitrogen, through addition or not of ammonium sulphate according to the following treatments: Tº= 0.000; T1/2 = 0.015; T1 =0.030; and T2 = 0.060 g/kg soil. Determinations of minimum (F0, maximum (Fm, variable (Fv, and terminal (Ft fluorescence and maximum photochemical efficiency (Fv/Fm of dark-adapted leaves were carried out during the day, five days after the second application of ammonium sulphate, carried out 120 days after the transplant. The results showed that the addition of ammonium sulphate affected variable and maximum fluorescence, but not

  19. Canopy Level Chlorophyll Fluorescence and the PRI in a Cornfield

    Science.gov (United States)

    Middleton, Elizabeth M.; Cheng, Yen-Ben; Corp, Lawrence A.; Campbell, Petya K. E.; Huemmrich, K. Fred; Zhang, Qingyuan; Kustas, William P.

    2012-01-01

    Two bio-indicators, the Photochemical Reflectance Index (PRI) and solar-induced red and far-red Chlorophyll Fluorescence (SIF), were derived from directional hyperspectral observations and studied in a cornfield on two contrasting days in the growing season. Both red and far-red SIF exhibited higher values on the day when the canopy in the early senescent stage, but only the far-red SIF showed sensitivity to viewing geometry. Consequently, the red/far-red SIF ratio varied greatly among azimuth positions while the largest values were obtained for the "hotspot" at both growth stages. This ratio was lower (approx.0.88 +/- 0.4) in early July than in August when the ratio approached equivalence (near approx.1). In concert, the PRI exhibited stronger responses to both zenith and azimuth angles and different values on the two growth stages. The potential of using these indices to monitor photosynthetic activities needs further investigation

  20. Imaging of fast chlorophyll fluorescence induction curve (OJIP) parameters, applied in a screening study with wild barley (Hordeum spontaneum) genotypes under heat stress.

    Science.gov (United States)

    Jedmowski, Christoph; Brüggemann, Wolfgang

    2015-10-01

    We quantified the influence of heat stress (HS) on PSII by imaging of parameters of the fast chlorophyll fluorescence (CF) induction (OJIP) kinetic of 20 genotypes of wild barley (Hordeum spontaneum) covering a broad geographical spectrum. We developed a standardised screening procedure, allowing a repetitive fluorescence measurement of leaf segments. The impact of HS was quantified by calculating a Heat Resistance Index (HRI), derived from the decrease of the Performance Index (PI) caused by HS treatment and following recovery. For the genotype showing the lowest HRI, reduced maximum quantum yield (φP0) and increased relative variable fluorescence of the O-J phase (K-Peak) were detected after HS, whereas the basal fluorescence (F0) remained stable. An additional feature was a lowered fraction of active (QA-reducing) reaction centres (RCs). The disturbances disappeared after one day of recovery. Spatial heterogeneities of fluorescence parameters were detected, as the negative effect of HS was stronger in the leaf areas close to the leaf tip. The results of this study prove that chlorophyll fluorescence imaging (CFI) is suitable for the detection of HS symptoms and that imaging of JIP-Test parameters should be considered in future screening and phenotyping studies aiming for the characterisation of plant genotypes. Copyright © 2015 Elsevier B.V. All rights reserved.

  1. Use of a Novel Rover-mounted Fluorescence Imager and Fluorescent Probes to Detect Biological Material in the Atacama Desert in Daylight

    Science.gov (United States)

    Weinstein, S.; Pane, D.; Warren-Rhodes, K.; Cockell, C.; Ernst, L. A.; Minkley, E.; Fisher, G.; Emani, S.; Wettergreen, D. S.; Wagner, M.

    2005-01-01

    We have developed an imaging system, the Fluorescence Imager (FI), for detecting fluorescence signals from sparse microorganisms and biofilms during autonomous rover exploration. The fluorescence signals arise both from naturally occurring chromophores, such as chlorophyll of cyanobacteria and lichens, and from fluorescent probes applied to soil and rocks. Daylight imaging has been accomplished by a novel use of a high-powered flashlamp synchronized to a CCD camera. The fluorescent probes are cell permanent stains that have extremely low intrinsic fluorescence (quantum yields less than 0.01) and a large fluorescence enhancement (quantum yields greater than 0.4) when bound to the target. Each probe specifically targets either carbohydrates, proteins, nucleic acids or membrane lipids, the four classes of macromolecules found in terrestrial life. The intent of the probes is to interrogate the environment for surface and endolithic life forms.

  2. Effects of water stress and light intensity on chlorophyll fluorescence parameters and pigments of Aloe vera L.

    Science.gov (United States)

    Hazrati, Saeid; Tahmasebi-Sarvestani, Zeinolabedin; Modarres-Sanavy, Seyed Ali Mohammad; Mokhtassi-Bidgoli, Ali; Nicola, Silvana

    2016-09-01

    Aloe vera L. is one of the most important medicinal plants in the world. In order to determine the effects of light intensity and water deficit stress on chlorophyll (Chl) fluorescence and pigments of A. vera, a split-plot in time experiment was laid out in a randomized complete block design with four replications in a research greenhouse. The factorial combination of three light intensities (50, 75 and 100% of sunlight) and four irrigation regimes (irrigation after depleting 20, 40, 60 and 80% of soil water content) were considered as main factors. Sampling time was considered as sub factor. The first, second and third samplings were performed 90, 180 and 270 days after imposing the treatments, respectively. The results demonstrated that the highest light intensity and the severe water stress decreased maximum fluorescence (Fm), variable fluorescence (Fv)/Fm, quantum yield of PSII photochemistry (ФPSII), Chl and photochemical quenching (qP) but increased non-photochemical quenching (NPQ), minimum fluorescence (F0) and Anthocyanin (Anth). Additionally, the highest Fm, Fv/Fm, ФPSII and qP and the lowest NPQ and F0 were observed when 50% of sunlight was blocked and irrigation was done after 40% soil water depletion. Irradiance of full sunlight and water deficit stress let to the photoinhibition of photosynthesis, as indicated by a reduced quantum yield of PSII, ФPSII, and qP, as well as higher NPQ. Thus, chlorophyll florescence measurements provide valuable physiological data. Close to half of total solar radiation and irrigation after depleting 40% of soil water content were selected as the most efficient treatments. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  3. Estimation of the effect of radionuclide contamination on Vicia sativa L. induction of chlorophyll fluorescence parameters using "Floratest" optical biosensor

    Science.gov (United States)

    Ruban, Yu.; Illienko, V.; Nesterova, N.; Pareniuk, O.; Shavanova, K.

    2017-12-01

    The presented research was aimed to determine the parameters of chlorophyll fluorescence (IChH) curve induction for Vicia sativa L. that were grown on radionuclide contaminated soils by using "Floratest" fluorometer. Plants were inoculated with 5 species of bacteria that might potentially block radionuclide uptake (Agrobacterium radiobacter IMBB-7246, Azotobacter chroococcum UKMB-6082, A. chroococcum UKMB-6003, Bacillus megaterium UKMB-5724, Rhizobium leguminosarum bv. viceae) and grown in sod-podzolic, chernozem and peat-bog soils, contaminated with 137Cs (4000±340 Bq/kg). As a result of research, it was determined that the most stressful factors for vetch plants are combination of soil radionuclide and presence of Bacillus megaterium UKM B-5724, as the number of inactive chlorophyll increased. In addition, the vetch plants significantly increased fixed level of fluorescence (Fst) under the influence of radioactive contamination in presence of Bacillus megaterium UKM B-5724, indicating inhibition of photosynthetic reactions. Other bacteria showed radioprotective properties in almost all types of soil.

  4. Chlorophyll in tomato seeds: marker for seed performance?

    NARCIS (Netherlands)

    Suhartanto, M.R.

    2002-01-01

    Using Xe-PAM, laser induced fluorometry and high performance liquid chromatography we found that chlorophyll was present in young tomato (cv. Moneymaker) seeds and was degraded during maturation. Fluorescence microscopy and imaging showed that the majority of chlorophyll is located in the

  5. Experimental assessment of fluorescence microscopy signal enhancement by stimulated emission

    Science.gov (United States)

    Dake, Fumihiro; Yazawa, Hiroki

    2017-10-01

    The quantity of photons generated during fluorescence microscopy is principally determined by the quantum yield of the fluorescence dyes and the optical power of the excitation beam. However, even though low quantum yields can produce poor images, it is challenging to tune this parameter, while increasing the power of the excitation beam often results in photodamage. Here, we propose the use of stimulated emission (SE) as a means of enhancing both the signal intensity and signal-to-noise ratio during confocal fluorescence microscopy. This work experimentally confirmed that both these factors can be enhanced by SE radiation, through generating a greater number of photons than are associated with the standard fluorescence signal. We also propose the concept of stimulated emission enhancing fluorescence (SEEF) microscopy, which employs both the SE and fluorescence signals, and demonstrate that the intensity of an SEEF signal is greater than those of the individual SE and fluorescence signals.

  6. Measuring solar induced chlorophyll fluorescence (SIF) in the Amazon rainforest

    Science.gov (United States)

    Kornfeld, A.; Stutz, J.; Berry, J. A.

    2016-12-01

    Measurement of solar induced chlorophyll fluorescence (SIF) has, in our hands, been fraught with missteps and puzzling problems. Here we describe lessons we have learned and the resulting novel system recently installed in the Amazon rainforest near Manaus, Brazil. The system is designed to measure light from 740 - 780 nm, enabling us to compare SIF computed from Fraunhofer lines in an optically transparent band of the atmosphere (745 - 759 nm) with SIF computed using the telluric O2A band (760 - 770 nm). Fraunhofer line analysis requires high optical resolution (better than 0.2 nm) to detect the relatively narrow lines, but we discovered that fiber-optic diffraction-grating spectrometers are sensitive to very small inhomogeneities in the lighting. Errors resulting from this autocorrelated but random noise were similar in magnitude to the SIF signal itself. Optical diffusers reduce this problem, leading to our final design: a sealed cylinder, dubbed Rotaprism, in which a rotatable prism selects whether light from upward- or downward-looking windows enters an axially-placed optical fiber. Cosine-correcting opal glass covering the windows not only solves the noise issue but also makes the measurements correspond to photon flux. Rotaprism also maximizes the amount of light reaching the spectrometer - maximizing the signal:noise ratio - by avoiding the need for lossy optical switches and fiber splitters. Rotaprism is driven by a pneumatic actuator that is controlled by electronic valves attached to a pressurized N2 source. The gas exhausts into the temperature-controlled spectrometer enclosure to help purge the optics. Finally, custom software provides fault-tolerant control and data acquisition, ensuring that measurements continue with little or no intervention at the remote field site despite unreliable power. Analysis of initial data demonstrates the advantage of Fraunhofer line SIF analysis: due to the atmosphere transparency in this band, the results are more

  7. Chlorophyll b degradation by chlorophyll b reductase under high-light conditions.

    Science.gov (United States)

    Sato, Rei; Ito, Hisashi; Tanaka, Ayumi

    2015-12-01

    The light-harvesting chlorophyll a/b binding protein complex of photosystem II (LHCII) is the main antenna complex of photosystem II (PSII). Plants change their LHCII content depending on the light environment. Under high-light conditions, the content of LHCII should decrease because over-excitation damages the photosystem. Chlorophyll b is indispensable for accumulating LHCII, and chlorophyll b degradation induces LHCII degradation. Chlorophyll b degradation is initiated by chlorophyll b reductase (CBR). In land plants, NON-YELLOW COLORING 1 (NYC1) and NYC1-Like (NOL) are isozymes of CBR. We analyzed these mutants to determine their functions under high-light conditions. During high-light treatment, the chlorophyll a/b ratio was stable in the wild-type (WT) and nol plants, and the LHCII content decreased in WT plants. The chlorophyll a/b ratio decreased in the nyc1 and nyc1/nol plants, and a substantial degree of LHCII was retained in nyc1/nol plants after the high-light treatment. These results demonstrate that NYC1 degrades the chlorophyll b on LHCII under high-light conditions, thus decreasing the LHCII content. After the high-light treatment, the maximum quantum efficiency of the PSII photochemistry was lower in nyc1 and nyc1/nol plants than in WT and nol plants. A larger light-harvesting system would damage PSII in nyc1 and nyc1/nol plants. The fluorescence spectroscopy of the leaves indicated that photosystem I was also damaged by the excess LHCII in nyc1/nol plants. These observations suggest that chlorophyll b degradation by NYC1 is the initial reaction for the optimization of the light-harvesting capacity under high-light conditions.

  8. Differences in pigment composition, photosynthetic rates and chlorophyll fluorescence images of sun and shade leaves of four tree species

    Czech Academy of Sciences Publication Activity Database

    Lichtenthaler, H.K.; Ač, Alexander; Marek, Michal V.; Kalina, J.; Urban, Otmar

    2007-01-01

    Roč. 45, č. 8 (2007), s. 577-588 ISSN 0981-9428 R&D Projects: GA ČR GP522/05/P515; GA MŽP SM/640/18/03 Institutional research plan: CEZ:AV0Z60870520 Keywords : Carbon dioxide assimilation * Chlorophyll fluorescence decrease ratio * Carotenoid level Subject RIV: ED - Physiology Impact factor: 1.669, year: 2007

  9. Changes in chlorophyll fluorescence and photosynthetic activity of French bean leaves induced by gamma radiation

    International Nuclear Information System (INIS)

    Saakov, V.; Lang, M.; Schindler, C.; Stober, F.; Lichtenthaler, H.K.

    1992-01-01

    When exposed to gamma-radiation (12, 8 and 3.5 kGy), the growth of bean seedlings (Phaseolus vulgaris L.) was stopped and after some hours or days the plants began to wilt in a dose-dependent manner, starting from the leaf rim. The rate of the dark respiration (R) of leaves increased and that of net photosynthesis (P(N)) was strongly reduced. The regulation of stomata opening and closure was lost and the stomatal conductance (g(s)) of the gamma-ray exposed plants was strongly reduced. The reduced P(N) was only partly due to either the partial or almost full stomata closure. Chlorophyll (Chl) fluorescence measurements witha two-wavelength fluorometer and a PAM fluorometer showed an increasingly reduced variable fluorescence F(v), lower values of R(fd), of ground fluorescence F0, and of the fluorescence ratios F(v)/F(m) and F(v)/F(o). This indicated a damage to the photosynthetic apparatus. The increasing loss of photosynthetic pigments in the 350 krad exposed plants was also detected via an increase in the fluorescence ratio F690/F730. The performance of the light driven xanthophyll cycle (violaxanthin/zeaxanthin transformation) proceeded in the gamma-ray treated plants only at reduced rates. The gamma-ray damage of plants can best be detected by measurements of stomatal conductance, P(N) and various Chl fluorescence ratios such as R(fd), F(v)/F(o) and F(v)/F(m)

  10. Evaluation the vigour of urban green lawn grown under long-term shade conditions by the use of chlorophyll fluorescence technique

    Directory of Open Access Journals (Sweden)

    Dąbrowski Piotr

    2015-09-01

    Full Text Available Unfavorable light conditions in urban areas are one of the most important cause of inappropriate grass communities condition. The possibility to detect the plant stress caused by shade is an important element in shaping the environment. The answer to following questions: what is the ability to detect the stress caused by shade in chosen lawn varieties of Perennial ryegrass by using the chlorophyll a fluorescence (O-J-I-P test and which of tested varieties has the best properties to create grasslands in reduced light conditions is the aim of this work. Two-factor experimental micro-plot was conducted with three varieties and three different shadowing variants. Chlorophyll a fluorescence measurements were provided and were compared to leaf density. Our results explored significant difference between selected varieties in the terms of their photosynthetic apparatus adaption to light conditions. During May, all tested varieties were characterized by the rise of all fluorescence curve points under lower light intensity. The largest changes under shade conditions were noticed for the variety ‘Taya’. During next months a declining trend of photosynthetic efficiency for this variety was observed. On the basis of our results, we assume that each variety has unique threshold and needs of light intensity.

  11. Global monitoring of terrestrial chlorophyll fluorescence from moderate-spectral-resolution near-infrared satellite measurements: methodology, simulations, and application to GOME-2

    Directory of Open Access Journals (Sweden)

    J. Joiner

    2013-10-01

    Full Text Available Globally mapped terrestrial chlorophyll fluorescence retrievals are of high interest because they can provide information on the functional status of vegetation including light-use efficiency and global primary productivity that can be used for global carbon cycle modeling and agricultural applications. Previous satellite retrievals of fluorescence have relied solely upon the filling-in of solar Fraunhofer lines that are not significantly affected by atmospheric absorption. Although these measurements provide near-global coverage on a monthly basis, they suffer from relatively low precision and sparse spatial sampling. Here, we describe a new methodology to retrieve global far-red fluorescence information; we use hyperspectral data with a simplified radiative transfer model to disentangle the spectral signatures of three basic components: atmospheric absorption, surface reflectance, and fluorescence radiance. An empirically based principal component analysis approach is employed, primarily using cloudy data over ocean, to model and solve for the atmospheric absorption. Through detailed simulations, we demonstrate the feasibility of the approach and show that moderate-spectral-resolution measurements with a relatively high signal-to-noise ratio can be used to retrieve far-red fluorescence information with good precision and accuracy. The method is then applied to data from the Global Ozone Monitoring Instrument 2 (GOME-2. The GOME-2 fluorescence retrievals display similar spatial structure as compared with those from a simpler technique applied to the Greenhouse gases Observing SATellite (GOSAT. GOME-2 enables global mapping of far-red fluorescence with higher precision over smaller spatial and temporal scales than is possible with GOSAT. Near-global coverage is provided within a few days. We are able to show clearly for the first time physically plausible variations in fluorescence over the course of a single month at a spatial resolution of 0

  12. Prospects for Chlorophyll Fluorescence Remote Sensing from the Orbiting Carbon Observatory-2

    Science.gov (United States)

    Frankenberg, Christian; Odell, Chris; Berry, Joseph; Guanter, Luis; Joiner, Joanna; Kohler, Philipp; Pollock, Randy; Taylor, Thomas E.

    2014-01-01

    The Orbiting Carbon Observatory-2 (OCO-2), scheduled to launch in July 2014, is a NASA mission designed to measure atmospheric CO2. Its main purpose is to allow inversions of net flux estimates of CO2 on regional to continental scales using the total column CO2 retrieved using high-resolution spectra in the 0.76, 1.6, and 2.0 nm ranges. Recently, it was shown that solar-induced chlorophyll fluorescence (SIF), a proxy for gross primary production (GPP, carbon uptake through photosynthesis), can be accurately retrieved from space using high spectral resolution radiances in the 750 nm range from the Japanese GOSAT and European GOME-2 instruments. Here, we use real OCO-2 thermal vacuum test data as well as a full repeat cycle (16 days) of simulated OCO-2 spectra under realistic conditions to evaluate the potential of OCO-2 for retrievals of chlorophyll fluorescence and also its dependence on clouds and aerosols. We find that the single-measurement precision is 0.3-0.5 Wm(exp -2)sr(exp -1) nm(exp -1) (15-25% of typical peak values), better than current measurements from space but still difficult to interpret on a single-sounding basis. The most significant advancement will come from smaller ground-pixel sizes and increased measurement frequency, with a 100-fold increase compared to GOSAT (and about 8 times higher than GOME-2). This will largely decrease the need for coarse spatial and temporal averaging in data analysis and pave the way to accurate local studies.We also find that the lack of full global mapping from the OCO-2 only incurs small representativeness errors on regional averages. Eventually, the combination of net ecosystem exchange (NEE) derived from CO2 source/sink inversions and SIF as proxy for GPP from the same satellite will provide a more process-based understanding of the global carbon cycle.

  13. Overview of remote sensing of chlorophyll flourescene in ocean waters

    African Journals Online (AJOL)

    Overview of remote sensing of chlorophyll flourescene in ocean waters. ... Besides empirical algorithms with the blue-green ratio, the algorithms based on ... between fluorescence and chlorophyll concentration and the red shift phenomena.

  14. Recent developments and future directions in the monitoring of terrestrial sun-induced chlorophyll fluorescence from space

    Science.gov (United States)

    Guanter, L.

    2017-12-01

    Sun-induced chlorophyll fluorescence (SIF) is an electromagnetic signal emitted by the chlorophyll-a of assimilating plants in the 650-850 nm spectral range. The SIF emission has a mechanistic link to photosynthesis and responds instantaneously to perturbations in environmental conditions such as light and water stress, which makes it a powerful proxy for plants' photosynthetic activity. Global measurements of SIF from space have been available since late 2011 from four different atmospheric satellite missions (chronologically, GOSAT, SCIAMACHY, GOME-2 and OCO-2). The potential of the derived SIF data sets to represent the photosynthetic activity of different ecosystems, including large crop belts worldwide, the Amazon rainforest and boreal evergreen forests has been demonstrated in the relatively short life-time of global SIF data. Despite the demonstrated potential of SIF data as a proxy for global terrestrial gross primary production, current observations are partly hampered by a coarse spatial resolution or the lack of spatial coverage. For this reason, great expectations are put on the upcoming TROPOMI instrument onboard the Copernicus' Sentinel 5-Precursor mission to be launched by mid-end of 2017. TROPOMI will provide daily global coverage with a spatial resolution between 3 and 7 km and continuous spectral coverage of the visible and near-infrared part of the spectrum. The recent selection of FLEX as the ESA Earth Explorer 8 to be launched around 2022 and several upcoming geostationary missions (TEMPO, Sentinel-4 and GeoCARB, covering Europe and the Americas) with potential for SIF retrievals complete an exciting near-future scenario for the monitoring of SIF from space. In this contribution, we will provide an overview of recent developments in the global monitoring of SIF and will introduce the near-future observational scenario with especial emphasis on TROPOMI and the geostationary missions to be launched in the coming years.

  15. A chlorophyll fluorescence-based method for the integrated characterization of the photophysiological response to light stress.

    Science.gov (United States)

    Serôdio, João; Schmidt, William; Frankenbach, Silja

    2017-02-01

    This work introduces a new experimental method for the comprehensive description of the physiological responses to light of photosynthetic organisms. It allows the integration in a single experiment of the main established manipulative chlorophyll fluorescence-based protocols. It enables the integrated characterization of the photophysiology of samples regarding photoacclimation state (generating non-sequential light-response curves of effective PSII quantum yield, electron transport rate or non-photochemical quenching), photoprotection capacity (running light stress-recovery experiments, quantifying non-photochemical quenching components) and the operation of photoinactivation and photorepair processes (measuring rate constants of photoinactivation and repair for different light levels and the relative quantum yield of photoinactivation). The new method is based on a previously introduced technique, combining the illumination of a set of replicated samples with spatially separated actinic light beams of different intensity, and the simultaneous measurement of the fluorescence emitted by all samples using an imaging fluorometer. The main novelty described here is the independent manipulation of light intensity and duration of exposure for each sample, and the control of the cumulative light dose applied. The results demonstrate the proof of concept for the method, by comparing the responses of cultures of Chlorella vulgaris acclimated to low and high light regimes, highlighting the mapping of light stress responses over a wide range of light intensity and exposure conditions, and the rapid generation of paired light-response curves of photoinactivation and repair rate constants. This approach represents a chlorophyll fluorescence 'protocol of everything', contributing towards the high throughput characterization of the photophysiology of photosynthetic organisms. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental

  16. Chlorophyll Fluorescence and Reflectance-Based Non-Invasive Quantification of Blast, Bacterial Blight and Drought Stresses in Rice

    Czech Academy of Sciences Publication Activity Database

    Šebela, David; Quiňones, C.; Cruz, C.; Ona, I.; Olejníčková, Julie; Jagadish, K. S. V.

    2018-01-01

    Roč. 59, č. 1 (2018), s. 30-43 ISSN 0032-0781 R&D Projects: GA MŠk(CZ) LO1415 EU Projects: European Commission(XE) 284443 - EPPN Institutional support: RVO:86652079 Keywords : marker-assisted selection * oryza-sativa l. * water -stress * magnaporthe-grisea * disease resistance * photosynthetic efficiency * spectral reflectance * carotenoid content * eucalyptus leaves * diurnal changes * Bacterial blight * Chlorophyll fluorescence * Drought stress * Reflectance * Rice bast Subject RIV: EF - Botanics OBOR OECD: Plant sciences, botany Impact factor: 4.760, year: 2016

  17. Differential responses of seven contrasting species to high light using pigment and chlorophyll a fluorescence

    Directory of Open Access Journals (Sweden)

    Mittal S.

    2011-05-01

    Full Text Available High light intensity may induce severe photodamage to chloroplast and consequently cause decreases in the yield capacity of plants and destruction of pigments, causing an overall yellowing of the foliage. Thus, study related to light adaptation becomes necessary to understand adaptation processes in higher plants on the basis of which they are characterized as full sunlight or shade plants. Chlorophyll can be regarded as an intrinsic fluorescent probe of the photosynthetic system. The ecophysiological parameter related to plant performance and fitness i.e. in-situ chlorophyll fluorescence measurements were determined for different plant species in the medicinal plant garden of Banasthali University, Rajasthan. Miniaturized Pulse Amplitude Modulated Photosynthetic Yield Analyzers are primarily designed for measuring effective quantum yield (ΔF/Fm’ of photosystem II under momentary ambient light in the field. Photosynthetic yield measurements and light-response curves suggested a gradation of sun-adapted to shade-adapted behaviour of these plants in following order Withania somnifera> Catharanthus roseus> Datura stamonium> Vasica minora> Vasica adulta> Rauwolfia serpentina. As indicated by light response curves and pigment analysis, Datura stramonium, Withania somnifera and Catharanthus roseus competed well photosynthetically and are favoured while Rauwolfia serpentina, Vasica minora, Vasica adulta and Plumbago zeylanica were observed to be less competent photosynthetically. These light response curves and resultant cardinal points study gave insight into the ecophysiological characterization of the photosynthetic capacity of the plant and provides highly interesting parameters like electron transport rate, photo-inhibition, photosynthetically active photon flux density and yield on the basis of which light adaptability was screened for seven medicinally important plants.

  18. Photosynthesis, chlorophyll fluorescence, light-harvesting system and photoinhibition resistance of a zeaxanthin-accumulating mutant of Arabidopsis thaliana.

    Science.gov (United States)

    Tardy, F; Havaux, M

    1996-06-01

    The abscisic-acid-deficient aba-1 mutant of Arabidopsis thaliana is unable to epoxidize zeaxanthin. As a consequence, it contains large amounts of this carotenoid and lacks epoxy-xanthophylls. HPLC analysis of pigment contents in leaves, isolated thylakoids and preparations of the major light-harvesting complex of photosystem II (PSII) (LHC-II) indicated that zeaxanthin replaced neoxanthin, violaxanthin and antheraxanthin in the light-harvesting system of PSII in aba-1. Non-denaturing electrophoretic fractionation of solubilized thylakoids showed that the xanthophyll imbalance in aba-1 was associated with a pronounced decrease in trimeric LHC-II in favour of monomeric complexes, with a substantial increase in free pigments (mainly zeaxanthin and chlorophyll b), suggesting a decreased stability of LHC-II. The reduced thermostability of PSII in aba-1 was also deduced from in vivo chlorophyll fluorescence measurements. Wild-type and aba-1 leaves could not be distinguished on the basis of their photosynthetic performance: no significant difference was observed between the two types of leaves for light-limited and light-saturated photosynthetic oxygen evolution, PSII photochemistry and PSII to PSI electron flow. When dark-adapted leaves (grown in white light of 80 mumol m-2s-1) were suddenly exposed to red light of 150 mumol m-2s-1, there was a strong nonphotochemical quenching of chlorophyll fluorescence, the amplitude of which was virtually identical (at steady state) in aba-1 and wild-type leaves, despite the fact that the xanthophyll cycle pigment pool was completely in the form of zeaxanthin in aba-1 and almost exclusively in the form of violaxanthin in the wild type. A high concentration of zeaxanthin in aba-1 thylakoids did not, in itself, provide any particular protection against the photoinhibition of PSII. Taken together, the presented results indicate the following: (1) zeaxanthin can replace epoxy-xanthophylls in LHC-II without significantly affecting the

  19. Detection of herbicide effects on pigment composition and PSII photochemistry in Helianthus annuus by Raman spectroscopy and chlorophyll a fluorescence

    Czech Academy of Sciences Publication Activity Database

    Vítek, Petr; Novotná, Kateřina; Hodaňová, Petra; Rapantová, Barbora; Klem, Karel

    2017-01-01

    Roč. 170, Jan (2017), s. 234-241 ISSN 1386-1425 R&D Projects: GA MŠk(CZ) LO1415; GA MZe QJ1530373 Institutional support: RVO:67179843 Keywords : Raman mapping * Chlorophyll fluorescence * Carotenoids * Flavonoids * Photosynthesis * Secondary metabolites Subject RIV: EH - Ecology, Behaviour OBOR OECD: Environmental sciences (social aspects to be 5.7) Impact factor: 2.536, year: 2016

  20. Assessing boreal forest photosynthetic dynamics through space-borne measurements of greenness, chlorophyll fluorescence and model GPP

    Science.gov (United States)

    Walther, Sophia; Guanter, Luis; Voigt, Maximilian; Köhler, Philipp; Jung, Martin; Joiner, Joanna

    2015-04-01

    sophia.walther@gfz-potsdam.de The seasonality of photosynthesis of boreal forests is an essential driver of the terrestrial carbon, water and energy cycles. However, current carbon cycle model results only poorly represent interannual variability and predict very different magnitudes and timings of carbon fluxes between the atmosphere and the land surface (e.g. Jung et al. 2011, Richardson et al. 2012). Reflectance-based satellite measurements, which give an indication of the amount of green biomass on the Earth's surface, have so far been used as input to global carbon cycle simulations, but they have limitations as they are not directly linked to instantaneous photosynthesis. As an alternative, space-borne retrievals of sun-induced chlorophyll fluorescence (SIF) boast the potential to provide a direct indication of the seasonality of boreal forest photosynthetic activity and thus to improve carbon model performances. SIF is a small electromagnetic signal that is re-emitted from the photosystems in the chloroplasts, which results in a direct relationship to photosynthetic efficiency. In this contribution we examine the seasonality of the boreal forests with three different vegetation parameters, namely greenness, SIF and model simulations of gross primary production (gross carbon flux into the plants by photosynthesis, GPP). We use the enhanced vegetation index (EVI) to represent green biomass. EVI is calculated from NBAR MODIS reflectance measurements (0.05deg, 16 days temporal resolution) for the time from January 2007-May 2013. SIF data originate from GOME-2 measurements on board the MetOp-A satellite in a spatial resolution of 0.5deg for the time from 2007-2011 (Joiner et al. (2013), Köhler et al. (2014)). As a third data source, data-driven GPP model results are used for the time from 2006-2012 with 0.5deg spatial resolution. The method to quantify phenology developed by Gonsamo et al. (2013) is applied to infer the main phenological phases (greenup/onset of

  1. Analysis of chlorophyll fluorescence spectra for the monitoring of Cd toxicity in a bio-energy crop (Jatropha curcas).

    Science.gov (United States)

    Marques, Marise Conceição; do Nascimento, Clístenes Williams Araújo

    2013-10-05

    The vegetation of metal-contaminated soils using non-edible crops can be a safe and economical technique for Cd immobilization and the remediation of contaminated sites. Jatropha (Jatropha curcas L.) exhibits a relative tolerance to heavy metals and potential for biofuel production. The study was performed to monitor the Cd-induced alterations in jatropha plants by X-ray chlorophyll fluorescence. The Cd effects on photosynthetic pigments, the mineral composition of plants, defense enzyme activity and soluble proteins were also studied. Plants were grown for 20days in a nutrient solution with five Cd contents: 5, 10, 20, 30 and 40μmolL(-1); a control with no Cd addition was also monitored. The analysis of the chlorophyll fluorescence spectra allowed detecting alterations caused by Cd toxicity in the jatropha plants. The mineral composition of the plants was affected by the Cd doses; however, the Fe and Mg contents were not significantly reduced, which most likely improved the effects on the contents of the photosynthetic pigments. Because of its relative tolerance to Cd, Jatropha curcas may be a promising species to revegetate Cd-contaminated sites. Considering the long period needed to phytoremediate soils, the combination of remediation with bioenergy production could be an attractive option. Copyright © 2013 Elsevier B.V. All rights reserved.

  2. [Effects of simulating acid rain on photosynthesis and chlorophyll fluorescence parameters of Quercus glauca Quercus glauca].

    Science.gov (United States)

    Wang, Sai; Yi, Li-Ta; Yu, Shu-Quan; Zhang, Chao; Shi, Jing-Jing

    2014-08-01

    At three levels of simulated acid rainfall intensities with pH values of 2.5 (severe), 40 (medium) and 5.6 (light) respectively, the responses of chlorophyll fluorescence and photosynthetic parameters of Quercus glauca seedlings were studied in three acid rainfall treatments, i. e. only the aboveground of seedlings exposed to acid rain (T1), both of the seedlings and soil exposed to acid rain (T2), only the soil exposed to acid rain (T3) compared with blank control (CK). Under the severe acid rainfall, T1 significantly inhibited chlorophyll synthesis, and thus reduced the primary photochemical efficiency of PS II ( F(v)/F(m)), potential activity of PS II (F(v)/F(o)) , apparent quantum (Y), net photosynthetic rate (P(n)), and transpiration rate (T(r)), but increased the light compensation point (LCP) and dark respiration rate (R(d)) of Q. glauca seedlings. T2 inhibited, but T3 played a little enhancement on the aforementioned parameters of Q. glauca seedlings. Under the conditions of medium and light acid rainfall intensities, the above parameters in the three treatments were higher than that of CK, except with lower R(d). The chlorophyll fluorescence and photosynthetic parameters showed a similar tendency in the three treatments, i. e. T2>T3 >T1. It indicated that T1 had the strongest inhibition on seedlings in condition of the severe acid rainfall, while T2 had the most dramatic facilitating effect on seedlings under the medium and light acid rainfall. Intensity of acid rainfall had significant influences on SPAD, F(v)/F(m), F(v)/F(o), Y, P(n), T(r), and maximum photosynthetic rate (A(max)), whereas treatments of acid rainfall affected SPAD, F(v)/F(m), Y, P(n), T(r), A(max) and light saturation point (LSP). The interaction of acid rainfall intensities and treatments played significant effects on SPAD, F(v)/F(m), Y, P(n) and A(max).

  3. Phenotyping of wheat cultivars for heat tolerance using chlorophyll a fluorescence

    DEFF Research Database (Denmark)

    Sharma, Dew Kumari; Andersen, Sven Bode; Ottosen, Carl-Otto

    2012-01-01

    Abstract. In view of the global climate change, heat stress is an increasing constraint for the productivity of wheat (Triticum aestivum L.). Our aim was to identify contrasting cultivars in terms of heat tolerance by mass screening of 1274 wheat cultivars of diverse origin, based...... with a milder heat stress of 38Cin 300 mmolm–2 s–1 for 2 h with preheating at 33–35Cfor 19 h in 7–14 mmolm–2 s–1 light showed a genetic determination of 8.52.7%.Aheat treatment of 40Cin 300 mmolm–2 s–1 for 72 h in the second screening with 138 selected cultivars resulted in larger differentiation of cultivars...... with an increased genetic component (15.43.6%), which was further increased to 27.96.8% in the third screening with 41 contrasting cultivars. This contrasting set of cultivars was then used to compare the ability of chlorophyll fluorescence parameters to detect genetic difference in heat tolerance...

  4. Evaluation of Chlorophyll fluorescence and Biochemical traits of lettuce under drought stress and super absorbent or bentonite application

    OpenAIRE

    GHALE BEIG AKRAM VALIZADEH; Neamati, Seyyed; Tehranifar, Ali; Emami, Hojat

    2014-01-01

    The effects of two superabsorbents (natural-bentonite) and (synthetic-A 200) on the chlorophyll fluorescence index, proline accumulation, phenolic compounds, antioxidant activity and total carbohydrate in lettuce ( Lactuca sativa L.) was evaluated. For this purpose, a factorial experiment using completely randomized design with superabsorbents at 3 levels (0, 0.15, 0.30 w/w%), drought stress at 2 levels (60 and 100% of field capacity) and 4 replicates was conducted. Results showed that photos...

  5. ‘Golden Delicious’ and ‘Honeycrisp’ apple response to controlled atmosphere storage with oxygen set point determined in response to fruit chlorophyll fluorescence

    Science.gov (United States)

    Postharvest management of apple fruit ripening using controlled atmosphere (CA) cold storage can be enhanced as CA oxygen concentration is decreased to close to the anaerobic compensation point (ACP). Monitoring fruit chlorophyll fluorescence is one technology available to assess fruit response to ...

  6. The Validity Chlorophyll-a Estimation by Sun Induced Fluorescence in Estuarine Waters: An Analysis of Long-term (2003-2011) Water Quality Data from Tampa Bay, Florida (USA)

    Science.gov (United States)

    Moreno-Madrinan, Max Jacobo; Fischer, Andrew

    2012-01-01

    Satellite observation of phytoplankton concentration or chlorophyll-a is an important characteristic, critically integral to monitoring coastal water quality. However, the optical properties of estuarine and coastal waters are highly variable and complex and pose a great challenge for accurate analysis. Constituents such as suspended solids and dissolved organic matter and the overlapping and uncorrelated absorptions in the blue region of the spectrum renders the blue-green ratio algorithms for estimating chlorophyll-a inaccurate. Measurement of sun-induced chlorophyll fluorescence, on the other hand, which utilizes the near infrared portion of the electromagnetic spectrum, may provide a better estimate of phytoplankton concentrations. While modelling and laboratory studies have illustrated both the utility and limitations of satellite baseline algorithms based on the sun induced chlorophyll fluorescence signal, few have examined the empirical validity of these algorithms using a comprehensive long term in situ data set. In an unprecedented analysis of a long term (2003-2011) in situ monitoring data from Tampa Bay, Florida (USA), we assess the validity of the FLH product from the Moderate Resolution Imaging Spectrometer (MODIS) against chlorophyll ]a and a suite of water quality parameters taken in a variety of conditions throughout a large optically complex estuarine system. A systematic analysis of sampling sites throughout the bay is undertaken to understand how the relationship between FLH and in situ chlorophyll-a responds to varying conditions within the estuary including water depth, distance from shore and structures and eight water quality parameters. From the 39 station for which data was derived, 22 stations showed significant correlations when the FLH product was matched with in situ chlorophyll-alpha data. The correlations (r2) for individual stations within Tampa Bay ranged between 0.67 (n=28, pless than 0.01) and-0.457 (n=12, p=.016), indicating that

  7. Chlorophyll a fluorescence as a tool for a study of the Potato virus Y effects on photosynthesis of nontransgenic and transgenic Pssu-ipt tobacco

    Czech Academy of Sciences Publication Activity Database

    Spoustová, Petra; Synková, Helena; Valcke, R.; Čeřovská, Noemi

    2013-01-01

    Roč. 51, č. 2 (2013), s. 191-201 ISSN 0300-3604 Institutional research plan: CEZ:AV0Z50380511 Keywords : gas- exchange parameters * cytokinins * chlorophyll a fluorescence imaging Subject RIV: EF - Botanics Impact factor: 1.007, year: 2013

  8. Overview of Global Monitoring of Terrestrial Chlorophyll Fluorescence from Space

    Science.gov (United States)

    Guanter, Luis; Zhang, Yongguang; Kohler, Philipp; Walther, Sophia; Frankenberg, Christian; Joiner, Joanna

    2016-01-01

    Despite the critical importance of photosynthesis for the Earth system, understanding how it is influenced by factors such as climate variability, disturbance history, and water or nutrient availability remains a challenge because of the complex interactions and the lack of GPP measurements at various temporal and spatial scales. Space observations of the sun-induced chlorophyll fluorescence (SIF) electromagnetic signal emitted by plants in the 650-850nm spectral range hold the promise of providing a new view of vegetation photosynthesis on a global basis. Global retrievals of SIF from space have recently been achieved from a number of spaceborne spectrometers originally intended for atmospheric research. Despite not having been designed for land applications, such instruments have turned out to provide the necessary spectral and radiometric sensitivity for SIF retrieval from space. The first global measurements of SIF were achieved in 2011 from spectra acquired by the Japanese GOSAT mission launched in 2009. The retrieval takes advantage of the high spectral resolution provided by GOSATs Fourier Transform Spectrometer (FTS) which allows the evaluation of the in-filling of solar Fraunhofer lines by SIF. Unfortunately, GOSAT only provides a sparse spatial sampling with individual soundings separated by several hundred kilometers. Complementary, the Global Ozone Monitoring Experiment-2 (GOME-2) instruments onboard MetOp-A and MetOp-B enable SIF retrievals since 2007 with a continuous and global spatial coverage. GOME-2 measures in the red and near-infrared (NIR) spectral regions with a spectral resolution of 0.5 nm and a pixel size of up to 40x40 km2. Most recently, another global and spatially continuous data set of SIF retrievals at 740 nm spanning the 2003-2012 time frame has been produced from ENVISATSCIAMACHY. This observational scenario has been completed by the first fluorescence data from the NASA-JPL OCO-2 mission (launched in July 2014) and the upcoming

  9. Efficacy of reduced doses of bentazone assessed by instruments based on measurement of chlorophyll fluorescence

    Directory of Open Access Journals (Sweden)

    Vojtěch Kocurek

    2011-01-01

    Full Text Available Chlorophyll fluorescence is a type of radiation emitted by plants as unused part of energy absorbed from sunlight. Its intensity depends on many stress factors, nutrition, weather conditions etc. Methods based on chlorophyll fluorescence measurement have potential to be perspective for the assessment of herbicide efficacy, phytotoxicity or stress influence. Two fluorometers (FluorCam and handy FluorPen were used for measurements in laboratory experiments in 2007–2009. Herbicide Basagran super with active ingredient bentazone (480 g.l−1 was tested using a parameter called ‚Quantum yield of fluorescence‘ (QY in three different doses: the registered dose 2.0 l.ha−1 (100% and lower doses 1.5 l.ha−1 (75% and 1.0 l.ha−1 (50%. Treated experimental plants of redroot pigweed (Amaranthus retroflexus L. were measured in 0, 1, 2, 3, 6, 9 and 15 days after treatment and the results were compared with subjective assessment (estimation and growth parameters. The obtained results showed that the effect of bentazone measured by both devices was statistically significantly different from untreated control. We can also detect herbicide effect earlier by QY measurement than by other methods. Different doses showed significant differences 15 days after treatment for dose 2.0 l.ha−1 in comparison with both reduced doses. The subjective assessment showed significant differences in all terms of measurement (1–15 days after application except of the day of application. Regeneration of plants for which the youngest leaves were not treated by herbicide was observed for all doses. Difference of QY values between used devices was on average 0.119 (higher for FluorCam but statistically insignificant.

  10. Growth and chlorophyll fluorescence under salinity stress in sugar beet (Beta vulgaris L.

    Directory of Open Access Journals (Sweden)

    Fadi Abbas

    2014-02-01

    Full Text Available This study was carried out in the General Commission for Scientific Agricultural Research (GCSAR, Syria, at Der EzZour Agricultural Research Center, from 2008-2010, to examine the effect of salt conditions on some growth attributes and chlorophyll fluorescence in 10 Sugar Beet (Beta vulgaris L. genotypes under salinity stress. Sugar beet plants were irrigated with saline water, having electrical conductivity ranged from 8.6-10 dS.m-1during first year and 8.4-10.4 dS.m-1 during second year. A randomized completely block design with three replicates was used. The results showed that all studied growth attributes, leaf area, leaf number, relative growth rate, and net assimilation rate were decreased in salinity stress conditions compared to the controlled state. The findings indicated that salinity caused a decrement of light utilizing through increased values of fluorescence origin (fo, decreased values of fluorescence maximum (fm, and maximum yield of quantum in photosystem-II (fv/fm. Genotypes differed significantly in all studied attributes except in leaf number. Under salt conditions, Brigitta (monogerm achieved an increase in net assimilation rate, while Kawimera (multigerm achieved the lowest decrement in quantum yield in photosystem-II. Further studies are necessary to correlate the yield with yield components under similar conditions to determine the most tolerant genotype.International Journal of Environment Vol.3(1 2014: 1-9 DOI: http://dx.doi.org/10.3126/ije.v3i1.9937

  11. Dead or Alive? Using Membrane Failure and Chlorophyll a Fluorescence to Predict Plant Mortality from Drought.

    Science.gov (United States)

    Guadagno, Carmela R; Ewers, Brent E; Speckman, Heather N; Aston, Timothy Llewellyn; Huhn, Bridger J; DeVore, Stanley B; Ladwig, Joshua T; Strawn, Rachel N; Weinig, Cynthia

    2017-09-01

    Climate models predict widespread increases in both drought intensity and duration in the next decades. Although water deficiency is a significant determinant of plant survival, limited understanding of plant responses to extreme drought impedes forecasts of both forest and crop productivity under increasing aridity. Drought induces a suite of physiological responses; however, we lack an accurate mechanistic description of plant response to lethal drought that would improve predictive understanding of mortality under altered climate conditions. Here, proxies for leaf cellular damage, chlorophyll a fluorescence, and electrolyte leakage were directly associated with failure to recover from drought upon rewatering in Brassica rapa (genotype R500) and thus define the exact timing of drought-induced death. We validated our results using a second genotype (imb211) that differs substantially in life history traits. Our study demonstrates that whereas changes in carbon dynamics and water transport are critical indicators of drought stress, they can be unrelated to visible metrics of mortality, i.e. lack of meristematic activity and regrowth. In contrast, membrane failure at the cellular scale is the most proximate cause of death. This hypothesis was corroborated in two gymnosperms ( Picea engelmannii and Pinus contorta ) that experienced lethal water stress in the field and in laboratory conditions. We suggest that measurement of chlorophyll a fluorescence can be used to operationally define plant death arising from drought, and improved plant characterization can enhance surface model predictions of drought mortality and its consequences to ecosystem services at a global scale. © 2017 American Society of Plant Biologists. All Rights Reserved.

  12. A statistical analysis of the freshness of postharvest leafy vegetables with application of water based on chlorophyll fluorescence measurement

    Directory of Open Access Journals (Sweden)

    Yichen Qiu

    2017-12-01

    Full Text Available Vegetable freshness is very important for both restaurant and home consumers. In market, sellers frequently apply water to leafy vegetables to make them not lose weight and look fresh; however, these vegetables may not be stored for a long time as they appear. After a time limit, they may be quickly rotten. It is thus meaningful to investigate early and simple detection tools to measure leafy vegetable freshness while they are frequently applied water in selling. In this work, three types of newly harvested leafy vegetables were bought from a local farmer market and stored in the air with room temperature and roots submerging in water. Chlorophyll a fluorescence (ChlF from the vegetables was measured each half a day for three days. The obtained ChlF data were analyzed statistically and the correlation of ChlF parameters and vegetable freshness/storage time was obtained. The k-mean classification was also performed. It is found that Fo, Fj, Fm/Fo, and Fv/Fm can be used as an early detection tool to differentiate the freshness of leafy vegetables on which water is constantly applied in storage without visible difference. Keywords: Vegetable freshness, Chlorophyll fluorescence, Food measurement

  13. Leaf water potential, gas exchange and chlorophyll a fluorescence in acariquara seedlings (Minquartia guianensis Aubl.) under water stress and recovery

    OpenAIRE

    Liberato, Maria Astrid Rocha; Gonçalves, José Francisco de Carvalho; Chevreuil, Larissa Ramos; Nina Junior, Adamir da Rocha; Fernandes, Andreia Varmes; Santos Junior, Ulysses Moreira dos

    2006-01-01

    The physiological performance of acariquara (Minquartia guianensis) seedlings submitted to water deficit and the recovery of physiological parameters during rehydration were investigated in a greenhouse experiment. The analyzed parameters were: leaf water potential, gas exchange and chlorophyll a fluorescence. After thirty-five days, non-irrigated plants exhibited a leaf water potential 70 % lower compared to control plants (irrigated daily) and the stomatal conductance reached values close t...

  14. Spatio-temporal patterns of chlorophyll fluorescence and physiological and structural indices acquired from hyperspectral imagery as compared with carbon fluxes measured with eddy covariance

    NARCIS (Netherlands)

    Zarco-Tejada, P.J.; Morales Sierra, A.; Testi, L.; Villalobos, F.

    2013-01-01

    This study provides insight into the assessment of the spatio-temporal trends of chlorophyll fluorescence, narrow-band physiological indices, and structural indices acquired with a hyperspectral imager flown over a flux tower in a canopy characterized by small seasonal structural changes and a

  15. The Effect of PSII Inhibitors on Kautsky Curve and Chlorophyll Fluorescence in Common Lambsquarters (Chenopodium album L. and Common Purslane (Portulaca oleracea L.

    Directory of Open Access Journals (Sweden)

    A.A. Chitband

    2016-03-01

    Full Text Available Introduction: Desmedipham + phenmedipham + ethofumesate, phenylcarbamates + benzofuranyl alkanesulfonate herbicides, is widely used for post-emergence broad-leaved weed control in sugar beet. Chloridazon, a pyridazinone herbicide, is used as a pre- and post- emergence herbicide in sugar beet. Desmedipham, phenmedipham and chloridazon, are photosystem II (PSII inhibitors, their translocation via xylem are slow, mostly absorbed not only by roots, but also by foliage. Their mode of action is through the blocking of electron transfer between the primary and secondary quinones (QA and QB of PSII by binding to the QB-binding site and accepting electrons from QA in the chloroplasts. Measures of changes to the chlorophyll fluorescence induction curve (Kautsky curve, is a rapid, non-invasive and simple method for monitoring the physiological status of the photosynthetic apparatus in the plant. There are three phases found on the O, J, I and P steps. These phases primarily point out photochemical events relevant to PSII. The three phases are described as follows: at the O-J phase complete reduction of the primary electron acceptor QA of PSII takes place from 50 μs to 2 ms, the J-I phase corresponds to electron transfer from QA to QB happens between 2 to 30 ms and the I-P phase corresponds to the release of fluorescence quenching by the oxidized plastoquinone pool taking place within 30-500 ms. Materials and Methods: In order to determine how exposure affects the fluorescence induction curve (Kautsky curve and its parameters, two dose-response experiments carried out for chlorophyll fluorescence measuring. The treatments involved desmedipham + phenmedipham + ethofumesate at 0, 51.38, 102.75, 205.5, 308.25, 411, 616.5 and 822 g a.i. ha-1 and chloridazon at 0, 81.25, 162.5, 325, 650, 1300, 1950 and 2600 g a.i. ha-1 on common lambsquarters (Chenopodium album L. and common purslane (Portulaca oleracea L. at the research glasshouse of Agricultural Faculty of

  16. Wavelength-dependent ability of solar-induced chlorophyll fluorescence to estimate GPP

    Science.gov (United States)

    Liu, L.

    2017-12-01

    Recent studies have demonstrated that solar-induced chlorophyll fluorescence (SIF) can offer a new way for directly estimating the terrestrial gross primary production (GPP). In this paper, the wavelength-dependent ability of SIF to estimate GPP was investigated using both simulations by SCOPE model (Soil Canopy Observation, Photochemistry and Energy fluxes) and observations at the canopy level. Firstly, the response of the remotely sensed SIF at the canopy level to the absorbed photosynthetically active radiation (APAR ) was investigated. Both the simulations and observations confirm a linear relationship between canopy SIF and APAR, while it is species-specific and affected by biochemical components and canopy structure. The ratio of SIF to APAR varies greatly for different vegetation types, which is significant larger for canopy with horizontal structure than it with vertical structure. At red band, the ratio also decreases noticeable when chlorophyll content increases. Then, the performance of SIF to estimate GPP was investigated using diurnal observations of winter wheat at different grow stages. The results showed that the diurnal GPP could be robustly estimated from the SIF spectra for winter wheat at each growth stage, while the correlation weakened greatly at red band if all the observations made at different growth stages or all simulations with different LAI values were pooled together - a situation which did not occur at the far-red band. Finally, the SIF-based GPP models derived from the 2016 observations on winter wheat were well validated using the dataset from 2015, which give better performance for SIF at far-red band than that at red band. Therefore, it is very important to correct for reabsorption and scattering of the SIF radiative transfer from the photosystem to the canopy level before the remotely sensed SIF is linked to the GPP, especially at red band.

  17. Simple replacement of violaxanthin by zeaxanthin in LHC-II does not cause chlorophyll fluorescence quenching.

    Science.gov (United States)

    Dreuw, Andreas; Wormit, Michael

    2008-03-01

    Recently, a mechanism for the energy-dependent component (qE) of non-photochemical quenching (NPQ), the fundamental photo-protection mechanism in green plants, has been suggested. Replacement of violaxanthin by zeaxanthin in the binding pocket of the major light harvesting complex LHC-II may be sufficient to invoke efficient chlorophyll fluorescence quenching. Our quantum chemical calculations, however, show that the excited state energies of violaxanthin and zeaxanthin are practically identical when their geometry is constrained to the naturally observed structure of violaxanthin in LHC-II. Therefore, since violaxanthin does not quench LHC-II, zeaxanthin should not either. This theoretical finding is nicely in agreement with experimental results obtained by femtosecond spectroscopy on LHC-II complexes containing violaxanthin or zeaxanthin.

  18. [Effects of plastic film mulching and rain harvesting modes on chlorophyll fluorescence characteristics, yield and water use efficiency of dryland maize].

    Science.gov (United States)

    Li, Shang-Zhong; Fan, Ting-Lu; Wang, Yong; Zhao, Gang; Wang, Lei; Tang, Xiao-Ming; Dang, Yi; Zhao, Hui

    2014-02-01

    The differences on chlorophyll fluorescence parameters, yield and water use efficiency of dryland maize were compared among full plastic film mulching on double ridges and planting in catchment furrows (FFDRF), half plastic film mulching on double ridges and planting in catchment furrows (HFDRF), plastic film mulching on ridge and planting in film-side (FS), and flat planting with no plastic film mulching (NM) under field conditions in dry highland of Loess Plateau in 2007-2012. The results showed that fluorescence yield (Fo), the maximum fluorescence yield (Fm), light-adapted fluorescence yield when PS II reaction centers were totally open (F), light-adapted fluorescence yield when PS II reaction centers closed (Fm'), the maximal photochemical efficiency of PS II (Fv/Fm), the actual photochemical efficiency of PS II in the light (Phi PS II), the relative electron transport rate (ETR), photochemical quenching (qP) and non-photochemical quenching (qN) in maize leaves of FFDRF were higher than that of control (NM), and the value of 1-qP was lower than that of control, at 13:00, chlorophyll fluorescence parameters values of FFDRF was significantly higher than control, which were increased by 5.3%, 56.8%, 10.7%, 36.3%, 23.6%, 56.7%, 64.4%, 45.5%, 23.6% and -55.6%, respectively, compared with the control. Yield and water use efficiency of FFDRF were the highest in every year no matter dry year, normal year, humid year and hail disaster year. Average yield and water use efficiency of FFDRF were 12,650 kg x hm(-2) and 40.4 kg x mm(-1) x hm(-2) during 2007-2012, increased by 57.8% and 61.6% compared with the control, respectively, and also significantly higher compared with HFDRF and PS. Therefore, it was concluded that FFDRF had significantly increased the efficiency of light energy conversion and improved the production capacity of dryland maize.

  19. Response of carbon assimilation and chlorophyll fluorescence to soybean leaf phosphorus across CO2: Alternative electron sink, nutrient efficiency and critical phosphorus concentration

    Science.gov (United States)

    To evaluate the response of CO2 assimilation (PN) and various chlorophyll fluorescence (CF) parameters to phosphorus (P) nutrition soybean plants were grown in controlled environment growth chambers with sufficient (0.50 mM) and deficient (0.10 and 0.01 mM) P supply under ambient and elevated CO2 (a...

  20. Toxic Effects of Ethyl Cinnamate on the Photosynthesis and Physiological Characteristics of Chlorella vulgaris Based on Chlorophyll Fluorescence and Flow Cytometry Analysis

    Science.gov (United States)

    Jiao, Yang; Ouyang, Hui-Ling; Jiang, Yu-Jiao; Kong, Xiang-Zhen; He, Wei; Liu, Wen-Xiu; Yang, Bin; Xu, Fu-Liu

    2015-01-01

    The toxic effects of ethyl cinnamate on the photosynthetic and physiological characteristics of Chlorella vulgaris were studied based on chlorophyll fluorescence and flow cytometry analysis. Parameters, including biomass, F v/F m (maximal photochemical efficiency of PSII), ФPSII (actual photochemical efficiency of PSII in the light), FDA, and PI staining fluorescence, were measured. The results showed the following: (1) The inhibition on biomass increased as the exposure concentration increased. 1 mg/L ethyl cinnamate was sufficient to reduce the total biomass of C. vulgaris. The 48-h and 72-h EC50 values were 2.07 mg/L (1.94–2.20) and 1.89 mg/L (1.82–1.97). (2) After 24 h of exposure to 2–4 mg/L ethyl cinnamate, the photosynthesis of C. vulgaris almost ceased, manifesting in ФPSII being close to zero. After 72 h of exposure to 4 mg/L ethyl cinnamate, the F v/F m of C. vulgaris dropped to zero. (3) Ethyl cinnamate also affected the cellular physiology of C. vulgaris, but these effects resulted in the inhibition of cell yield rather than cell death. Exposure to ethyl cinnamate resulted in decreased esterase activities in C. vulgaris, increased average cell size, and altered intensities of chlorophyll a fluorescence. Overall, esterase activity was the most sensitive variable. PMID:26101784

  1. Energy transfer between surface-immobilized light-harvesting chlorophyll a/b complex (LHCII) studied by surface plasmon field-enhanced fluorescence spectroscopy (SPFS).

    Science.gov (United States)

    Lauterbach, Rolf; Liu, Jing; Knoll, Wolfgang; Paulsen, Harald

    2010-11-16

    The major light-harvesting chlorophyll a/b complex (LHCII) of the photosynthetic apparatus in green plants can be viewed as a protein scaffold binding and positioning a large number of pigment molecules that combines rapid and efficient excitation energy transfer with effective protection of its pigments from photobleaching. These properties make LHCII potentially interesting as a light harvester (or a model thereof) in photoelectronic applications. Most of such applications would require the LHCII to be immobilized on a solid surface. In a previous study we showed the immobilization of recombinant LHCII on functionalized gold surfaces via a 6-histidine tag (His tag) in the protein moiety. In this work the occurrence and efficiency of Förster energy transfer between immobilized LHCII on a functionalized surface have been analyzed by surface plasmon field-enhanced fluorescence spectroscopy (SPFS). A near-infrared dye was attached to some but not all of the LHC complexes, serving as an energy acceptor to chlorophylls. Analysis of the energy transfer from chlorophylls to this acceptor dye yielded information about the extent of intercomplex energy transfer between immobilized LHCII.

  2. A micellar model system for the role of zeaxanthin in the non-photochemical quenching process of photosynthesis--chlorophyll fluorescence quenching by the xanthophylls.

    Science.gov (United States)

    Avital, Shlomo; Brumfeld, Vlad; Malkin, Shmuel

    2006-07-01

    To get an insight to the mechanism of the zeaxanthin-dependent non-photochemical quenching in photosystem II of photosynthesis, we probed the interaction of some xanthophylls with excited chlorophyll-a by trapping both pigments in micelles of triton X-100. Optimal distribution of pigments among micelles was obtained by proper control of the micelle concentration, using formamide in the reaction mixture, which varies the micellar aggregation number over three orders of magnitude. The optimal reaction mixture was obtained around 40% (v/v) formamide in 0.2-0.4% (v/v) triton X-100 in water. Zeaxanthin in the micellar solution exhibited initially absorption and circular dichroism spectral features corresponding to a J-type aggregate. The spectrum was transformed over time (half-time values vary-an average characteristic figure is roughly 20 min) to give features representing an H-type aggregate. The isosbestic point in the series of spectral curves favors the supposition of a rather simple reaction between two pure J and H-types dimeric species. Violaxanthin exhibited immediately stable spectral features corresponding to a mixture of J-type and more predominately H-type dimers. Lutein, neoxanthin and beta-carotene did not show any aggregated spectral forms in micelles. The spectral features in micelles were compared to spectra in aqueous acetone, where the assignment to various aggregated types was established previously. The specific tendency of zeaxanthin to form the J-type dimer (or aggregate) could be important for its function in photosynthesis. The abilities of five carotenoids (zeaxanthin, violaxanthin, lutein, neoxanthin and beta-carotene) to quench chlorophyll-a fluorescence were compared. Zeaxanthin, in its two micellar dimeric forms, and beta-carotene were comparable good quenchers of chlorophyll-a fluorescence. Violaxanthin was a much weaker quencher, if at all. Lutein and neoxanthin rather enhanced the fluorescence. The implications to non

  3. Chlorophyll catabolism in olive fruits (var. Arbequina and Hojiblanca) during maturation.

    Science.gov (United States)

    Vergara-Domínguez, Honorio; Ríos, José Julían; Gandul-Rojas, Beatriz; Roca, María

    2016-12-01

    The central reaction of chlorophyll (chl) breakdown pathway occurring during olive fruits maturation is the cleavage of the macrocycle pheophorbide a to a primary fluorescent chl catabolite (pFCC) and it is catalyzed by two enzymes: pheophorbide a oxygenase (PaO) and red chl catabolite reductase (RCCR). In subsequent steps, pFCC is converted to different fluorescent chlorophyll catabolites (FCCs) and nonfluorescent chlorophyll catabolites (NCCs). This work demonstrated that RCCR activity of olive fruits is type II. During the study of evolution of PaO and RCCR activities through the olive fruits maturation in two varieties: Hojiblanca and Arbequina, a significant increase in PaO and RCCR activity was found in ripening stage. In addition, the profile and structure of NCCs present in epicarp of this fruit was studied using HPLC/ESI-TOF-MS. Five different NCCs were defined and for the first time the enzymatic reactions implied in chlorophyll degradations in olive fruits elucidated. Copyright © 2016 Elsevier Ltd. All rights reserved.

  4. Study of improving signal-noise ratio for fluorescence channel

    Science.gov (United States)

    Wang, Guoqing; Li, Xin; Lou, Yue; Chen, Dong; Zhao, Xin; Wang, Ran; Yan, Debao; Zhao, Qi

    2017-10-01

    Laser-induced fluorescence(LIFS), which is one of most effective discrimination methods to identify the material at the molecular level by inducing fluorescence spectrum, has been popularized for its fast and accurate probe's results. According to the research, violet laser or ultraviolet laser is always used as excitation light source. While, There is no atmospheric window for violet laser and ultraviolet laser, causing laser attenuation along its propagation path. What's worse, as the laser reaching sample, part of the light is reflected. That is, excitation laser really react on sample to produce fluorescence is very poor, leading to weak fluorescence mingled with the background light collected by LIFS' processing unit, when it used outdoor. In order to spread LIFS to remote probing under the complex background, study of improving signal-noise ratio for fluorescence channel is a meaningful work. Enhancing the fluorescence intensity and inhibiting background light both can improve fluorescence' signal-noise ratio. In this article, three different approaches of inhibiting background light are discussed to improve the signal-noise ratio of LIFS. The first method is increasing fluorescence excitation area in the proportion of LIFS' collecting field by expanding laser beam, if the collecting filed is fixed. The second one is changing field angle base to accommodate laser divergence angle. The third one is setting a very narrow gating circuit to control acquisition circuit, which is shortly open only when fluorescence arriving. At some level, these methods all can reduce the background light. But after discussion, the third one is best with adding gating acquisition circuit to acquisition circuit instead of changing light path, which is effective and economic.

  5. Use of intrinsic fluorescent signals for characterizing tissue metabolic states in health and disease

    Science.gov (United States)

    Chance, Britton

    1996-04-01

    The large content of mitochondria in metabolizing cells, coupled with intrinsic NADH and flavoprotein signals makes these signals ideal for characterizing tissue metabolic states in health and disease. The first few millimeters of tissue are reached by the fluorescence excitation in the exposed surfaces of the cervix, bladder, rectum and esophagus, etc. Thus, extensive use has been made of fluorescent signals by a large number of investigators for tumor diagnosis from an empirical standpoint where the fluorescent signals are generally diminished in precancerous and cancerous tissue. This article reviews the biochemical basis for the fluorescent signals and points to a 'gold standard' for fluorescent signal examination involving freeze trapping and low temperature two- or three-dimensional high resolution fluorescence spectroscopy.

  6. A method for the rapid generation of nonsequential light-response curves of chlorophyll fluorescence.

    Science.gov (United States)

    Serôdio, João; Ezequiel, João; Frommlet, Jörg; Laviale, Martin; Lavaud, Johann

    2013-11-01

    Light-response curves (LCs) of chlorophyll fluorescence are widely used in plant physiology. Most commonly, LCs are generated sequentially, exposing the same sample to a sequence of distinct actinic light intensities. These measurements are not independent, as the response to each new light level is affected by the light exposure history experienced during previous steps of the LC, an issue particularly relevant in the case of the popular rapid light curves. In this work, we demonstrate the proof of concept of a new method for the rapid generation of LCs from nonsequential, temporally independent fluorescence measurements. The method is based on the combined use of sample illumination with digitally controlled, spatially separated beams of actinic light and a fluorescence imaging system. It allows the generation of a whole LC, including a large number of actinic light steps and adequate replication, within the time required for a single measurement (and therefore named "single-pulse light curve"). This method is illustrated for the generation of LCs of photosystem II quantum yield, relative electron transport rate, and nonphotochemical quenching on intact plant leaves exhibiting distinct light responses. This approach makes it also possible to easily characterize the integrated dynamic light response of a sample by combining the measurement of LCs (actinic light intensity is varied while measuring time is fixed) with induction/relaxation kinetics (actinic light intensity is fixed and the response is followed over time), describing both how the response to light varies with time and how the response kinetics varies with light intensity.

  7. Endolithic chlorophyll d-containing phototrophs

    DEFF Research Database (Denmark)

    Behrendt, Lars; Larkum, Anthony W D; Norman, Anders

    2011-01-01

    hyperspectral and variable chlorophyll fluorescence imaging, scanning electron microscopy, photopigment analysis and DNA sequencing to show that Acaryochloris-like cyanobacteria thrive underneath crustose coralline algae in a widespread endolithic habitat on coral reefs. This finding suggests an important role...

  8. Optical Reflectance and Fluorescence for Detecting Nitrogen Needs in Zea mays L.

    Science.gov (United States)

    McMurtrey, J. E.; Middleton, E. M.; Corp. L. A.; Campbell, P. K. Entcheva; Butcher, L. M.; Daughtry, C. S. T.

    2003-01-01

    Nitrogen (N) status in field grown corn (Zea mays L.) was assessed using spectral techniques. Passive reflectance remote sensing and, both passive and active fluorescence sensing methods were investigated. Reflectance and fluorescence methods are reported to detect changes in the primary plant pigments (chlorophylls a and b; carotenoids) in higher plant species. As a general rule, foliar chlorophyll a (Chl a) and chlorophyll b (Chl b) usually exist in approx.3:l ratio. In plants under stress, Chl b content is affected before Chl a reductions occur. For reflectance, a version of the chlorophyll absorption in reflectance index (CARI) method was tested with narrow bands from the Airborne Imaging Spectroradiometer for Applications (ASIA). CARI minimizes the effects of soil background on the signal from green canopies. A modified CARI (MCARI) was used to track total Chl a levels in the red dip of the spectrum from the corn canopy. A second MCARI was used to track the auxiliary plant pigments (Chl b and the carotenoids) in the yellow/orange/red edge part of the reflectance spectrum. The difference between these two MCARI indices detected variations in N levels across the field plot canopies using ASIA data. At the leaf level, ratios of fluorescence emissions in the blue, green, red and far-red wavelengths sensed responses that were associated with the plant pigments, and were indicative of energy transfer in the photosynthetic process. N stressed corn stands could be distinguish from those with optimally applied N with fluorescence emission spectra obtained from individual corn leaves. Both reflectance and fluorescence methods are sensitive in detecting corn N needs and may be especially powerful in monitoring crop conditions if both types of information can be combined.

  9. Predictability and environmental drivers of chlorophyll fluctuations vary across different time scales and regions of the North Sea

    Science.gov (United States)

    Blauw, Anouk N.; Benincà, Elisa; Laane, Remi W. P. M.; Greenwood, Naomi; Huisman, Jef

    2018-02-01

    Phytoplankton concentrations display strong temporal variability at different time scales. Recent advances in automated moorings enable detailed investigation of this variability. In this study, we analyzed phytoplankton fluctuations at four automated mooring stations in the North Sea, which measured phytoplankton abundance (chlorophyll) and several environmental variables at a temporal resolution of 12-30 min for two to nine years. The stations differed in tidal range, water depth and freshwater influence. This allowed comparison of the predictability and environmental drivers of phytoplankton variability across different time scales and geographical regions. We analyzed the time series using wavelet analysis, cross correlations and generalized additive models to quantify the response of chlorophyll fluorescence to various environmental variables (tidal and meteorological variables, salinity, suspended particulate matter, nitrate and sea surface temperature). Hour-to-hour and day-to-day fluctuations in chlorophyll fluorescence were substantial, and mainly driven by sinking and vertical mixing of phytoplankton cells, horizontal transport of different water masses, and non-photochemical quenching of the fluorescence signal. At the macro-tidal stations, these short-term phytoplankton fluctuations were strongly driven by the tides. Along the Dutch coast, variation in salinity associated with the freshwater influence of the river Rhine played an important role, while in the central North Sea variation in weather conditions was a major determinant of phytoplankton variability. At time scales of weeks to months, solar irradiance, nutrient conditions and thermal stratification were the dominant drivers of changes in chlorophyll concentrations. These results show that the dominant drivers of phytoplankton fluctuations differ across marine environments and time scales. Moreover, our findings show that phytoplankton variability on hourly to daily time scales should not be

  10. Chlorophyll a fluorescence, under half of the adaptive growth-irradiance, for high-throughput sensing of leaf-water deficit in Arabidopsis thaliana accessions

    Czech Academy of Sciences Publication Activity Database

    Mishra, Kumud; Mishra, Anamika; Novotná, Kateřina; Rapantová, Barbora; Hodańová, Petra; Urban, Otmar

    2016-01-01

    Roč. 12, č. 1 (2016), č. článku 46. ISSN 1746-4811 R&D Projects: GA MŠk(CZ) LO1415; GA ČR GA13-28093S EU Projects: European Commission(XE) 284443 - EPPN Institutional support: RVO:67179843 Keywords : Chlorophyll fluorescence transients * Drought * Whole plant rosettes * Natural accessions * Non-invasive methods * Plant phenotyping Subject RIV: EH - Ecology, Behaviour Impact factor: 3.510, year: 2016

  11. Geomagnetic and strong static magnetic field effects on growth and chlorophyll a fluorescence in Lemna minor.

    Science.gov (United States)

    Jan, Luka; Fefer, Dušan; Košmelj, Katarina; Gaberščik, Alenka; Jerman, Igor

    2015-04-01

    The geomagnetic field (GMF) varies over Earth's surface and changes over time, but it is generally not considered as a factor that could influence plant growth. The effects of reduced and enhanced GMFs and a strong static magnetic field on growth and chlorophyll a (Chl a) fluorescence of Lemna minor plants were investigated under controlled conditions. A standard 7 day test was conducted in extreme geomagnetic environments of 4 µT and 100 µT as well as in a strong static magnetic field environment of 150 mT. Specific growth rates as well as slow and fast Chl a fluorescence kinetics were measured after 7 days incubation. The results, compared to those of controls, showed that the reduced GMF significantly stimulated growth rate of the total frond area in the magnetically treated plants. However, the enhanced GMF pointed towards inhibition of growth rate in exposed plants in comparison to control, but the difference was not statistically significant. This trend was not observed in the case of treatments with strong static magnetic fields. Our measurements suggest that the efficiency of photosystem II is not affected by variations in GMF. In contrast, the strong static magnetic field seems to have the potential to increase initial Chl a fluorescence and energy dissipation in Lemna minor plants. © 2015 Wiley Periodicals, Inc.

  12. On the origin of the slow M-T chlorophyll a fluorescence decline in cyanobacteria: interplay of short-term light-responses.

    Science.gov (United States)

    Bernát, Gábor; Steinbach, Gábor; Kaňa, Radek; Govindjee; Misra, Amarendra N; Prašil, Ondřej

    2018-05-01

    The slow kinetic phases of the chlorophyll a fluorescence transient (induction) are valuable tools in studying dynamic regulation of light harvesting, light energy distribution between photosystems, and heat dissipation in photosynthetic organisms. However, the origin of these phases are not yet fully understood. This is especially true in the case of prokaryotic oxygenic photoautotrophs, the cyanobacteria. To understand the origin of the slowest (tens of minutes) kinetic phase, the M-T fluorescence decline, in the context of light acclimation of these globally important microorganisms, we have compared spectrally resolved fluorescence induction data from the wild type Synechocystis sp. PCC 6803 cells, using orange (λ = 593 nm) actinic light, with those of mutants, ΔapcD and ΔOCP, that are unable to perform either state transition or fluorescence quenching by orange carotenoid protein (OCP), respectively. Our results suggest a multiple origin of the M-T decline and reveal a complex interplay of various known regulatory processes in maintaining the redox homeostasis of a cyanobacterial cell. In addition, they lead us to suggest that a new type of regulatory process, operating on the timescale of minutes to hours, is involved in dissipating excess light energy in cyanobacteria.

  13. The 2010 Russian Drought Impact on Satellite Measurements of Solar-Induced Chlorophyll Fluorescence: Insights from Modeling and Comparisons with the Normalized Differential Vegetation Index (NDVI)

    Science.gov (United States)

    Yoshida, Y.; Joiner, J.; Tucker, C.; Berry, J.; Lee, J. -E.; Walker, G.; Reichle, R.; Koster, R.; Lyapustin, A.; Wang, Y.

    2015-01-01

    We examine satellite-based measurements of chlorophyll solar-induced fluorescence (SIF) over the region impacted by the Russian drought and heat wave of 2010. Like the popular Normalized Difference Vegetation Index (NDVI) that has been used for decades to measure photosynthetic capacity, SIF measurements are sensitive to the fraction of absorbed photosynthetically-active radiation (fPAR). However, in addition, SIF is sensitive to the fluorescence yield that is related to the photosynthetic yield. Both SIF and NDVI from satellite data show drought-related declines early in the growing season in 2010 as compared to other years between 2007 and 2013 for areas dominated by crops and grasslands. This suggests an early manifestation of the dry conditions on fPAR. We also simulated SIF using a global land surface model driven by observation-based meteorological fields. The model provides a reasonable simulation of the drought and heat impacts on SIF in terms of the timing and spatial extents of anomalies, but there are some differences between modeled and observed SIF. The model may potentially be improved through data assimilation or parameter estimation using satellite observations of SIF (as well as NDVI). The model simulations also offer the opportunity to examine separately the different components of the SIF signal and relationships with Gross Primary Productivity (GPP).

  14. Signal and noise modeling in confocal laser scanning fluorescence microscopy.

    Science.gov (United States)

    Herberich, Gerlind; Windoffer, Reinhard; Leube, Rudolf E; Aach, Til

    2012-01-01

    Fluorescence confocal laser scanning microscopy (CLSM) has revolutionized imaging of subcellular structures in biomedical research by enabling the acquisition of 3D time-series of fluorescently-tagged proteins in living cells, hence forming the basis for an automated quantification of their morphological and dynamic characteristics. Due to the inherently weak fluorescence, CLSM images exhibit a low SNR. We present a novel model for the transfer of signal and noise in CLSM that is both theoretically sound as well as corroborated by a rigorous analysis of the pixel intensity statistics via measurement of the 3D noise power spectra, signal-dependence and distribution. Our model provides a better fit to the data than previously proposed models. Further, it forms the basis for (i) the simulation of the CLSM imaging process indispensable for the quantitative evaluation of CLSM image analysis algorithms, (ii) the application of Poisson denoising algorithms and (iii) the reconstruction of the fluorescence signal.

  15. STAY-GREEN and Chlorophyll Catabolic Enzymes Interact at Light-Harvesting Complex II for Chlorophyll Detoxification during Leaf Senescence in Arabidopsis[C][W

    Science.gov (United States)

    Sakuraba, Yasuhito; Schelbert, Silvia; Park, So-Yon; Han, Su-Hyun; Lee, Byoung-Doo; Andrès, Céline Besagni; Kessler, Felix; Hörtensteiner, Stefan; Paek, Nam-Chon

    2012-01-01

    During leaf senescence, plants degrade chlorophyll to colorless linear tetrapyrroles that are stored in the vacuole of senescing cells. The early steps of chlorophyll breakdown occur in plastids. To date, five chlorophyll catabolic enzymes (CCEs), NONYELLOW COLORING1 (NYC1), NYC1-LIKE, pheophytinase, pheophorbide a oxygenase (PAO), and red chlorophyll catabolite reductase, have been identified; these enzymes catalyze the stepwise degradation of chlorophyll to a fluorescent intermediate, pFCC, which is then exported from the plastid. In addition, STAY-GREEN (SGR), Mendel’s green cotyledon gene encoding a chloroplast protein, is required for the initiation of chlorophyll breakdown in plastids. Senescence-induced SGR binds to light-harvesting complex II (LHCII), but its exact role remains elusive. Here, we show that all five CCEs also specifically interact with LHCII. In addition, SGR and CCEs interact directly or indirectly with each other at LHCII, and SGR is essential for recruiting CCEs in senescing chloroplasts. PAO, which had been attributed to the inner envelope, is found to localize in the thylakoid membrane. These data indicate a predominant role for the SGR-CCE-LHCII protein interaction in the breakdown of LHCII-located chlorophyll, likely to allow metabolic channeling of phototoxic chlorophyll breakdown intermediates upstream of nontoxic pFCC. PMID:22366162

  16. Chlorophyll and its degradation products in the two-spotted spider mite, Tetranychus urticae: observations using epifluorescence and confocal laser scanning microscopy.

    Science.gov (United States)

    Occhipinti, Andrea; Maffei, Massimo E

    2013-10-01

    Chlorophyll and chlorophyll degradation products were observed in the two-spotted spider mite (Tetranychus urticae) using epifluorescence microscopy (EFM) and confocal laser scanning microscopy (CLSM). A clear red fluorescence (EFM) and a fluorescence induced by a laser wavelength of 650 nm (CLSM) were observed. In the lateral caeca, in the ventriculus and in the excretory organ, a bright light blue fluorescence was observed in close association with chlorophyll by using EFM. The same material can be localized with CLSM by using a laser with a wavelength of 488 nm. By comparison with synthetic guanine, this bright fluorescence is supposed to be guanine. The presence of guanine fluorescence in the mite pellets confirms this hypothesis. A possible mechanism for guanine formation is discussed.

  17. Effect of Drought Stress and Methanol on Chlorophyll Parameters, Chlorophyll Content and Relative Water Content of Soybean (Glycine max L., var. L 17

    Directory of Open Access Journals (Sweden)

    M Mirakhori

    2011-01-01

    Full Text Available Abstract In order to investigate the effects of methanol application on some physiological properties of soybean under low water stress, a factorial experiment was conducted at Research Field of Faculty of Agriculture and Natural Resources, Islamic Azad University-Karaj Branch, Karaj, Iran, during 2008, based on a randomized complete block design with three replications. The first factor was consisted of different levels of methanol equal to 0 (control, 7, 14, 21, 28 and 35 volumetric percentage (v/v, which were used as foliar applications at three times during growth season of soybean, with 15 days intervals. The second factor was water stress conditions in two levels, based on depletion of 40 and 70% of available soil moisture. Some traits such as grain yield (GY, relative water content (RWC, chlorophyll fluorescence parameters, and chlorophyll content were measured, one day before and after the third methanol application. Results showed that chlorophyll content (Chl, GY, electrolytes leakage (EL at second sampling, photochemical capacity of PSII (Fv/Fm, maximum and variable fluorescence (Fm and FV, respectively were affected by water stress significantly (p

  18. Quality evaluation of the edible blue-green alga Nostoc flagelliforme using a chlorophyll fluorescence parameter and several biochemical markers.

    Science.gov (United States)

    Gao, Xiang; Yang, Yiwen; Ai, Yufeng; Luo, Hongyi; Qiu, Baosheng

    2014-01-15

    Nostoc flagelliforme is an edible blue-green alga with herbal and dietary values. Due to the diminishing supply of natural N. flagelliforme and the large investment on the development of its cultivation technology, it is anticipated that artificially cultured N. flagelliforme will soon sustain the market supply. Once this change occurs, the storage-associated quality problem will become the focus of attention for future trade. In this paper, we used a chlorophyll fluorescence parameter, maximum quantum efficiency of Photosystem II (Fv/Fm), and several biomarkers to evaluate the quality of several N. flagelliforme samples. It was found that longer storage times resulted in darker coloured solutions (released pigments) and decreased amounts of chlorophyll a (Chl a) and water-soluble sugars (WSS). Additionally, a higher Fv/Fm value suggests better physiological recovery and quality. In actual application, determination of Fv/Fm would be the first step for evaluating the quality of N. flagelliforme, and the biochemical indexes would serve as good secondary markers. Copyright © 2013 Elsevier Ltd. All rights reserved.

  19. Mercury effects on Thalassiosira weissflogii: Applications of two-photon excitation chlorophyll fluorescence lifetime imaging and flow cytometry

    International Nuclear Information System (INIS)

    Wu Yun; Zeng Yan; Qu, Jianan Y.; Wang Wenxiong

    2012-01-01

    The toxic effects of inorganic mercury [Hg(II)] and methylmercury (MeHg) on the photosynthesis and population growth in a marine diatom Thalassiosira weissflogii were investigated using two methods: two-photon excitation fluorescence lifetime imaging (FLIM) and flow cytometry (FCM). For photosynthesis, Hg(II) exposure increased the average chlorophyll fluorescence lifetime, whereas such increment was not found under MeHg stress. This may be caused by the inhibitory effect of Hg(II) instead of MeHg on the electron transport chain. For population growth, modeled specific growth rate data showed that the reduction in population growth by Hg(II) mainly resulted from an increased number of injured cells, while the live cells divided at the normal rates. However, MeHg inhibitory effects on population growth were contributed by the reduced division rates of all cells. Furthermore, the cell images and the FCM data reflected the morphological changes of diatom cells under Hg(II)/MeHg exposure vividly and quantitatively. Our results demonstrated that the toxigenicity mechanisms between Hg(II) and MeHg were different in the algal cells.

  20. Relationship between leaf optical properties, chlorophyll fluorescence and pigment changes in senescing Acer saccharum leaves.

    Science.gov (United States)

    Junker, Laura Verena; Ensminger, Ingo

    2016-06-01

    The ability of plants to sequester carbon is highly variable over the course of the year and reflects seasonal variation in photosynthetic efficiency. This seasonal variation is most prominent during autumn, when leaves of deciduous tree species such as sugar maple (Acer saccharum Marsh.) undergo senescence, which is associated with downregulation of photosynthesis and a change of leaf color. The remote sensing of leaf color by spectral reflectance measurements and digital repeat images is increasingly used to improve models of growing season length and seasonal variation in carbon sequestration. Vegetation indices derived from spectral reflectance measurements and digital repeat images might not adequately reflect photosynthetic efficiency of red-senescing tree species during autumn due to the changes in foliar pigment content associated with autumn phenology. In this study, we aimed to assess how effectively several widely used vegetation indices capture autumn phenology and reflect the changes in physiology and photosynthetic pigments during autumn. Chlorophyll fluorescence and pigment content of green, yellow, orange and red leaves were measured to represent leaf senescence during autumn and used as a reference to validate and compare vegetation indices derived from leaf-level spectral reflectance measurements and color analysis of digital images. Vegetation indices varied in their suitability to track the decrease of photosynthetic efficiency and chlorophyll content despite increasing anthocyanin content. Commonly used spectral reflectance indices such as the normalized difference vegetation index and photochemical reflectance index showed major constraints arising from a limited representation of gradual decreases in chlorophyll content and an influence of high foliar anthocyanin levels. The excess green index and green-red vegetation index were more suitable to assess the process of senescence. Similarly, digital image analysis revealed that vegetation

  1. Response of grapevine leaves to plasmopara viticola infection by means of measurement of reflectance and fluorescence signals

    Czech Academy of Sciences Publication Activity Database

    Šebela, David; Olejníčková, Julie; Župčanová, A.; Sotolář, R.

    2012-01-01

    Roč. 27, č. 8 (2012), s. 229-237 ISSN 1211-8516 R&D Projects: GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : Plasmopara viticola * downy mildew * grapevine * leaf tissue * susceptible varieties * chlorophyll fluorescence imaging * reflectance Subject RIV: GM - Food Processing

  2. Towards a Solid Foundation of Using Remotely Sensed Solar-Induced Chlorophyll Fluorescence for Crop Monitoring and Yield Forecast

    Science.gov (United States)

    Chen, Y.; Sun, Y.; You, L.; Liu, Y.

    2017-12-01

    The growing demand for food production due to population increase coupled with high vulnerability to volatile environmental changes poses a paramount challenge for mankind in the coming century. Real-time crop monitoring and yield forecasting must be a key part of any solution to this challenge as these activities provide vital information needed for effective and efficient crop management and for decision making. However, traditional methods of crop growth monitoring (e.g., remotely sensed vegetation indices) do not directly relate to the most important function of plants - photosynthesis and therefore crop yield. The recent advance in the satellite remote sensing of Solar-Induced chlorophyll Fluorescence (SIF), an integrative photosynthetic signal from molecular origin and a direct measure of plant functions holds great promise for real-time monitoring of crop growth conditions and forecasting yields. In this study, we use satellite measurements of SIF from both the Global Ozone Monitoring Experiment-2 (GOME-2) onboard MetOp-A and the Orbiting Carbon Observatory-2 (OCO-2) satellites to estimate crop yield using both process-based and statistical models. We find that SIF-based crop yield well correlates with the global yield product Spatial Production Allocation Model (SPAM) derived from ground surveys for all major crops including maize, soybean, wheat, sorghum, and rice. The potential and challenges of using upcoming SIF satellite missions for crop monitoring and prediction will also be discussed.

  3. Chlorophyll Fluorescence in Partially Defoliated Grape Plants (Vitis vinifera L. cv. Chardonnay / Fluorescencia de la Clorofila en Plantas de Uva (Vitis vinifera L. cv. Chardonnay Defoliadas Parcialmente

    Directory of Open Access Journals (Sweden)

    Peña Olmos Jaime Ernesto

    2013-08-01

    Full Text Available The chlorophyll content and fluorescence weredetermined in five-year-old grape plants (Vitis vinifera L. cv.Chardonnay that were subjected to early partial defoliation,in Villa de Leyva, Colombia. The experimental design wascompletely randomized, consisting of two treatments (50%defoliation and control, each with four replications of 35 plants. Every two weeks, one of every two recently-emerged leaves was removed from the non-control plants. The determination of total chlorophyll content was carried out on six leaves per plant using a CCM-200 Plus chlorophyll meter, while chlorophyll fluorescence measurements were taken with one darkadapted leaf per plant using a Junior-PAM fluorometer. Initial fluorescence (Fo, maximum fluorescence (Fm, terminal fluorescence (Ft, variable fluorescence (Fv, electron transport rate (ETR, maximum photochemical quantum yield of PSII (Fv/ Fm, effective photochemical quantum yield of photosystem II (Y(II, photochemical fluorescence quenching coefficient (qP, two non-photochemical quenching coefficients (qN and NPQ,quantum yield of light-induced non-photochemical fluorescence quenching (Y(NPQ, and quantum yield of non-light-induced non-photochemical quenching (Y(NO were measured. The chlorophyll concentration index showed higher values in the defoliated plants. There were no significant differences for the values of Fm, Ft and Fv. Fo was higher in the defoliated plants, while ETR, Fv/Fm and Y(II showed higher values in the control plants. It is evident that a reduction in leaf area modifies thepartitioning of excitation energy destined for photochemicaland non-photochemical processes, thus directly influencing the photosynthetic process of the plants evaluated. / Utilizando un diseño completamente aleatorizado,con dos tratamientos (defoliación al 50% y control y cuatrorepeticiones de 35 plantas cada una, se determinó el contenido y la fluorescencia de la clorofila en plantas de uva, sometidas a defoliación parcial

  4. Hyperspectral and Chlorophyll Fluorescence Imaging to Analyse the Impact of Fusarium culmorum on the Photosynthetic Integrity of Infected Wheat Ears

    Directory of Open Access Journals (Sweden)

    Werner B. Herppich

    2011-03-01

    Full Text Available Head blight on wheat, caused by Fusarium spp., is a serious problem for both farmers and food production due to the concomitant production of highly toxic mycotoxins in infected cereals. For selective mycotoxin analyses, information about the on-field status of infestation would be helpful. Early symptom detection directly on ears, together with the corresponding geographic position, would be important for selective harvesting. Hence, the capabilities of various digital imaging methods to detect head blight disease on winter wheat were tested. Time series of images of healthy and artificially Fusarium-infected ears were recorded with a laboratory hyperspectral imaging system (wavelength range: 400 nm to 1,000 nm. Disease-specific spectral signatures were evaluated with an imaging software. Applying the ‘Spectral Angle Mapper’ method, healthy and infected ear tissue could be clearly classified. Simultaneously, chlorophyll fluorescence imaging of healthy and infected ears, and visual rating of the severity of disease was performed. Between six and eleven days after artificial inoculation, photosynthetic efficiency of infected compared to healthy ears decreased. The severity of disease highly correlated with photosynthetic efficiency. Above an infection limit of 5% severity of disease, chlorophyll fluorescence imaging reliably recognised infected ears. With this technique, differentiation of the severity of disease was successful in steps of 10%. Depending on the quality of chosen regions of interests, hyperspectral imaging readily detects head blight 7 d after inoculation up to a severity of disease of 50%. After beginning of ripening, healthy and diseased ears were hardly distinguishable with the evaluated methods.

  5. Fluorescence spectral properties of outer antenna LHC II

    CERN Document Server

    He Jun Fang; Zhang, Shu; He Fang Tao; Ren Zhao You; Li Liang Bi; Kuang Ting Yun

    2002-01-01

    Outer antenna LHC II acts to absorb and transfer energy for photosynthesis. The authors studied the fluorescence properties of LHC II of spinach with scanning imaging fluorescence spectroscopy. After it had been excited by 514.5 nm laser, the integral fluorescence spectrum of LHC II was detected. It was shown that energy transfer existed between carotenoid and chlorophyll. Seven bands of LHC II fluorescence emission were resolved by Gauss combination, viz. 656.7, 664.6, 671.5, 677.2, 683.5, 689.6, 695.3 nm, and the percentages of them were 3.0%, 13.1%,13.3%, 21.1%, 13.2%, 33.3%, 3.0% respectively. The emission of 658.7 nm was attributed to chlorophyll b, the other emission bands were produced by chlorophyll a molecules with the maximum absorption 662, 670/671, 676, 680 nm and over 690 nm. The band 656.7 nm, whose percentage was 3.0%, shows that the most energy was absorbed by chlorophyll a. The percentage of band 689.6 nm was the most, which was possibly correlated with one type of self protective mechanism o...

  6. Changes of the laser-induced blue, green and red fluorescence signatures during greening of etiolated leaves of wheat

    International Nuclear Information System (INIS)

    Stober, F.; Lichtenthaler, H.K.

    1992-01-01

    The UV-laser-induced blue, green and red fluorescence-emission spectra were used to characterize the pigment status of etiolated leaves of wheat (Triticum aestivum L.) during a 48 h greening period under white light conditions. Upon UV-light excitation (337 nm) leaves not only show a fluorescence emission in the red spectral region between 650 and 800nm (chlorophyll fluorescence with maxima near 690nm and 735 nm), but also in the blue and green regions between 400 to 570 nm with maxima or shoulders near 450 nm (blue) and 530 nm (green). During greening of etiolated leaves the chlorophyll-fluorescence ratio F690/F735 strongly correlated with the total chlorophyll content and the ratio of the chlorophylls to the carotenoids (a+b/x+c). The ratio of the blue to the green fluorescence F450/F530 was also correlated with the total chlorophyll content and the ratio of chlorophylls to total carotenoids (a+b/x+c). Consequently, there also existed a correlation between the chlorophyll-fluorescence ratio F690/F735 and the ratio of the blue to green fluorescence F450/F530. In contrast, the ratios of the blue to red fluorescences F450/F690 and F450/F735 did not show clear relations to the pigment content of the investigated plants. The particular shape of the UV-laser-induced-fluorescence emission spectra of wheat leaves as well as the dependencies of the fluorescence ratios on the pigment content are due to a partial and differential reabsorption of the emitted fluorescences by the photosynthetic pigments

  7. A molecular-sized optical logic circuit for digital modulation of a fluorescence signal

    Science.gov (United States)

    Nishimura, Takahiro; Tsuchida, Karin; Ogura, Yusuke; Tanida, Jun

    2018-03-01

    Fluorescence measurement allows simultaneous detection of multiple molecular species by using spectrally distinct fluorescence probes. However, due to the broad spectra of fluorescence emission, the multiplicity of fluorescence measurement is generally limited. To overcome this limitation, we propose a method to digitally modulate fluorescence output signals with a molecular-sized optical logic circuit by using optical control of fluorescence resonance energy transfer (FRET). The circuit receives a set of optical inputs represented with different light wavelengths, and then it switches high and low fluorescence intensity from a reporting molecule according to the result of the logic operation. By using combinational optical inputs in readout of fluorescence signals, the number of biomolecular species that can be identified is increased. To implement the FRET-based circuits, we designed two types of basic elements, YES and NOT switches. An YES switch produces a high-level output intensity when receiving a designated light wavelength input and a low-level intensity without the light irradiation. A NOT switch operates inversely to the YES switch. In experiments, we investigated the operation of the YES and NOT switches that receive a 532-nm light input and modulate the fluorescence intensity of Alexa Fluor 488. The experimental result demonstrates that the switches can modulate fluorescence signals according to the optical input.

  8. Trocas gasosas e fluorescência da clorofila em seis cultivares de cafeeiro sob estresse de alumínio Gas exchange and chlorophyll fluorescence in six coffee cultivars under aluminum stress

    Directory of Open Access Journals (Sweden)

    Maria Luiza Freitas Konrad

    2005-01-01

    Full Text Available Em experimento desenvolvido em casa de vegetação e em câmara de crescimento avaliou-se o efeito do alumínio (Al na fotossíntese de seis cultivares de cafeeiro. As plantas foram cultivadas em solução nutritiva aerada continuamente, contendo duas concentrações de Al, 0 e 0,148 mmol L-1, fornecidas como Al2(SO43. Após 97 dias mediram-se as taxas de assimilação de CO2 (A e transpiração (E, a condutância estomática (gs, a concentração interna de CO2 (Ci, eficiência instantânea de carboxilação (fic e variáveis de fluorescência da clorofila. Em todas as cultivares, a presença de Al causou quedas significantes em A, gs, fic, ocorrendo aumento em Ci. Também se observou aumento significativo na fluorescência basal (Fo e queda na eficiência quântica máxima do fotossistema II (Fv/Fm, sugerindo injúrias na estrutura dos tilacóides causadas pelo Al. Na curva de indução de fotossíntese, observou-se que o Al causou queda no coeficiente de extinção fotoquímica da fluorescência e aumento no coeficiente de extinção não fotoquímico. Os resultados desse estudo indicaram que a queda de A foi devida à queda da condutância estomática, nas atividades bioquímicas e fotoquímicas.Experiments were carried out under greenhouse and growth chamber to evaluate the effects of aluminum (Al on several photosynthetic characteristics in six coffee cultivars. Plants were grown in nutrient solution aerated continuously, containing two Al concentration, 0 and 0.148 mmol L-1, supplied as Al2(SO43. After 97 days of treatament, measurements of CO2 assimilation rate (A, transpiration rate (E, stomatal conductance (gs, internal CO2 concentration (Ci, instantaneous carboxylation efficiency (phic and chlorophyll fluorescence related characteristics were performed. All six cultivars showed decrease in A, gs and phic and increase in Ci. The basal chlorophyll fluorescence yield (Fo increased and the maximum quantum efficiency (Fv/Fm decreased

  9. Stress tolerance and stress-induced injury in crop plants measured by chlorophyll fluorescence in vivo: chilling, freezing, ice cover, heat, and high light.

    Science.gov (United States)

    Smillie, R M; Hetherington, S E

    1983-08-01

    The proposition is examined that measurements of chlorophyll fluorescence in vivo can be used to monitor cellular injury caused by environmental stresses rapidly and nondestructively and to determine the relative stress tolerances of different species. Stress responses of leaf tissue were measured by F(R), the maximal rate of the induced rise in chlorophyll fluorescence. The time taken for F(R) to decrease by 50% in leaves at 0 degrees C was used as a measure of chilling tolerance. This value was 4.3 hours for chilling-sensitive cucumber. In contrast, F(R) decreased very slowly in cucumber leaves at 10 degrees C or in chilling-tolerant cabbage leaves at 0 degrees C. Long-term changes in F(R) of barley, wheat, and rye leaves kept at 0 degrees C were different in frost-hardened and unhardened material and in the latter appeared to be correlated to plant frost tolerance. To simulate damage caused by a thick ice cover, wheat leaves were placed at 0 degrees C under N(2). Kharkov wheat, a variety tolerant of ice encapsulation, showed a slower decrease in F(R) than Gatcher, a spring wheat. Relative heat tolerance was also indicated by the decrease in F(R) in heated leaves while changes in vivo resulting from photoinhibition, ultraviolet radiation, and photobleaching can also be measured.

  10. Spinach seed quality - potential for combining seed size grading and chlorophyll flourescence sorting

    DEFF Research Database (Denmark)

    Deleuran, Lise Christina; Olesen, Merete Halkjær; Boelt, Birte

    2013-01-01

    might therefore improve the establishment of spinach for producers. Spinach seeds were harvested at five different times (H1, H2, H3, H4 and H5) starting 3 weeks before estimated optimum harvest time. The harvested seeds were sorted according to chlorophyll fluorescence (CF) and seed size. Two harvest.......5–3.25 mm size seeds had germinated on day 3 than both their larger and smaller counterparts at the later time of harvest (H4). Seeds with a diameter below 2.5 mm displayed the lowest MGT. Commercially, the use of chlorophyll fluorescence (CF)-sorted seeds, in combination with seed size sorting, may provide...

  11. Relation of Chlorophyll Fluorescence Sensitive Reflectance Ratios to Carbon FluxMeasurements ofMontanne Grassland and Norway Spruce Forest Ecosystems in the Temperate Zone

    Czech Academy of Sciences Publication Activity Database

    Ač, Alexander; Malenovský, Z.; Urban, Otmar; Hanuš, Jan; Zitová, Martina; Navrátil, M.; Vráblová, M.; Olejníčková, Julie; Špunda, V.; Marek, Michal V.

    2012-01-01

    Roč. 2012, č. 2012 (2012), s. 1-13 ISSN 1537-744X R&D Projects: GA MŽP(CZ) SP/2D1/70/08; GA MŽP(CZ) SP/2D1/93/07; GA MŠk(CZ) LM2010007; GA MŠk(CZ) ED1.1.00/02.0073 Institutional research plan: CEZ:AV0Z60870520 Keywords : Chlorophyll fluorescence * carbon flux * forest ecosystems * Norway Spruce * temperate zone Subject RIV: EH - Ecology, Behaviour Impact factor: 1.730, year: 2012

  12. A Method to Reconstruct the Solar-Induced Canopy Fluorescence Spectrum from Hyperspectral Measurements

    Directory of Open Access Journals (Sweden)

    Feng Zhao

    2014-10-01

    Full Text Available A method for canopy Fluorescence Spectrum Reconstruction (FSR is proposed in this study, which can be used to retrieve the solar-induced canopy fluorescence spectrum over the whole chlorophyll fluorescence emission region from 640–850 nm. Firstly, the radiance of the solar-induced chlorophyll fluorescence (Fs at five absorption lines of the solar spectrum was retrieved by a Spectral Fitting Method (SFM. The Singular Vector Decomposition (SVD technique was then used to extract three basis spectra from a training dataset simulated by the model SCOPE (Soil Canopy Observation, Photochemistry and Energy fluxes. Finally, these basis spectra were linearly combined to reconstruct the Fs spectrum, and the coefficients of them were determined by Weighted Linear Least Squares (WLLS fitting with the five retrieved Fs values. Results for simulated datasets indicate that the FSR method could accurately reconstruct the Fs spectra from hyperspectral measurements acquired by instruments of high Spectral Resolution (SR and Signal to Noise Ratio (SNR. The FSR method was also applied to an experimental dataset acquired in a diurnal experiment. The diurnal change of the reconstructed Fs spectra shows that the Fs radiance around noon was higher than that in the morning and afternoon, which is consistent with former studies. Finally, the potential and limitations of this method are discussed.

  13. Gas exchange and chlorophyll fluorescence of pea (Pisum sativum L.) plants in response to ambient ozone at a rural site in Egypt

    International Nuclear Information System (INIS)

    Ismail, I.M.; Basahi, J.M.; Hassan, I.A.

    2014-01-01

    Egyptian pea cultivars (Pisum sativum L. cultivars Little Marvel, Perfection and Victory) grown in open-top chambers were exposed to either charcoal-filtered (FA) or non-filtered air (NF) for five consecutive years (2009–2013) at a rural site in northern Egypt. Net photosynthetic rates (P N ), stomatal conductance (g s ), intercellular CO 2 (C i ) and chlorophyll fluorescence were measured. Ozone (O 3 ) was found to be the most prevalent pollutant common at the rural site and is suspected to be involved in the alteration of the physiological parameters measured in the present investigation. P N of different cultivars were found to respond similarly; decreases of 23, 29 and 39% were observed in the cultivars Perfection, Little Marvel and Victory, respectively (averaged over the five years) due to ambient O 3 . The maximum impairment in P N was recorded in the cultivar Victory (46%) in 2013 when the highest O 3 levels were recorded (90 nL L −1 ). The average stomatal conductance decreased by 20 and 18% in the cultivars Little Marvel and Perfection, respectively, while the average stomatal conductance increased on average by 27% in the cultivar Victory. A significant correlation was found between P N and C i , indicating the importance of non-stomatal limitations of photosynthesis, especially in the cultivar Victory. The P N vs. Ci curves were fitted to a non-rectangular hyperbolic model. The actual quantum yield (Φ PSII ) and photochemical quenching coefficient (qP) were significantly decreased in the leaves of plants exposed to NF air. Non-photochemical quenching (NPQ) was increased in all cultivars. Exposure to NF air caused reductions in chlorophyll (Chl a) of 19, 16 and 30% in the Little Marvel, Perfection and Victory cultivars, respectively. - Highlights: • Ozone (O 3 ) concentrations recorded were within the ranges of phytotoxicity. • O 3 has a clear influence on the physiological parameters. • O 3 decreased Photosynthetic rates, chlorophyll

  14. Global and Time-Resolved Monitoring of Crop Photosynthesis with Chlorophyll Fluorescence

    Science.gov (United States)

    Guanter, Luis; Zhang, Yongguang; Jung, Martin; Joiner, Joanna; Voigt, Maximilian; Berry, Joseph A.; Frankenberg, Christian; Huete, Alfredo R.; Zarco-Tejada, Pablo; Lee, Jung-Eun; hide

    2014-01-01

    Photosynthesis is the process by which plants harvest sunlight to produce sugars from carbon dioxide and water. It is the primary source of energy for all life on Earth; hence it is important to understand how this process responds to climate change and human impact. However, model-based estimates of gross primary production (GPP, output from photosynthesis) are highly uncertain, in particular over heavily managed agricultural areas. Recent advances in spectroscopy enable the space-based monitoring of sun-induced chlorophyll fluorescence (SIF) from terrestrial plants. Here we demonstrate that spaceborne SIF retrievals provide a direct measure of the GPP of cropland and grassland ecosystems. Such a strong link with crop photosynthesis is not evident for traditional remotely sensed vegetation indices, nor for more complex carbon cycle models. We use SIF observations to provide a global perspective on agricultural productivity. Our SIF-based crop GPP estimates are 50-75% higher than results from state-of-the-art carbon cycle models over, for example, the US Corn Belt and the Indo-Gangetic Plain, implying that current models severely underestimate the role of management. Our results indicate that SIF data can help us improve our global models for more accurate projections of agricultural productivity and climate impact on crop yields. Extension of our approach to other ecosystems, along with increased observational capabilities for SIF in the near future, holds the prospect of reducing uncertainties in the modeling of the current and future carbon cycle.

  15. Hydroxymethylated Dioxobilins in Senescent Arabidopsis thaliana Leaves: Sign of a Puzzling Biosynthetic Intermezzo of Chlorophyll Breakdown.

    Science.gov (United States)

    Süssenbacher, Iris; Kreutz, Christoph R; Christ, Bastien; Hörtensteiner, Stefan; Kräutler, Bernhard

    2015-08-10

    1-Formyl-19-oxobilin-type tetrapyrroles are characteristic, abundant products of chlorophyll breakdown in senescent leaves. However, in some leaves, 1,19-dioxobilin-type chlorophyll catabolites (DCCs) lacking the formyl group accumulate instead. A P450 enzyme was identified in in vitro studies that removed the formyl group of a primary fluorescent chlorophyll catabolite (pFCC) and generated fluorescent DCCs. These DCCs are precursors of isomeric nonfluorescent DCCs (NDCCs). Here, we report a structural investigation of the NDCCs in senescent leaves of wild-type Arabidopsis thaliana. Four new NDCCs were characterized, two of which carried a stereoselectively added hydroxymethyl group. Such formal DCC hydroxymethylations were previously found in DCCs in leaves of a mutant of A. thaliana. They are now indicated to be a feature of chlorophyll breakdown in A. thaliana, associated with the specific in vivo deformylation of pFCC en route to NDCCs. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. Steady-state chlorophyll fluorescence (Fs) as a tool to monitor plant heat and drought stress

    Science.gov (United States)

    Cendrero Mateo, M.; Carmo-Silva, A.; Salvucci, M.; Moran, S. M.; Hernandez, M.

    2012-12-01

    Crop yield decreases when photosynthesis is limited by heat or drought conditions. Yet farmers do not monitor crop photosynthesis because it is difficult to measure at the field scale in real time. Steady-state chlorophyll fluorescence (Fs) can be used at the field level as an indirect measure of photosynthetic activity in both healthy and physiologically-perturbed vegetation. In addition, Fs can be measured by satellite-based sensors on a regular basis over large agricultural regions. In this study, plants of Camelina sativa grown under controlled conditions were subjected to heat and drought stress. Gas exchange and Fs were measured simultaneously with a portable photosynthesis system under light limiting and saturating conditions. Results showed that Fs was directly correlated with net CO2 assimilation (A) and inversely correlated with non-photochemical quenching (NPQ). Analysis of the relationship between Fs and Photosynthetically Active Radiation (PAR) revealed significant differences between control and stressed plants that could be used to track the status, resilience, and recovery of photochemical processes. In summary, the results provide evidence that Fs measurements, even without normalization, are an easy means to monitor changes in plant photosynthesis, and therefore, provide a rapid assessment of plant stress to guide farmers in resource applications. Figure1. Net CO2 assimilation rate (A) of Camelina sativa plants under control conditions and after heat stress exposure for 1 or 3 days (1d-HS and 3d-HS, respectively) (right) and control, drought and re-watering conditions (left). Conditions for infra-red gas analysis were: reference CO2 = 380 μmol mol-1, PPFD = 500 μmol m-2 s-1 and Tleaf set to 25°C (control, drought and re-water) or 35°C (HS). Different letters denote significant differences at the α=0.05 level. Values are means±SEM (n=10). Figure 2. Stable chlorophyll fluorescence (Fs) of Camelina sativa plants under control conditions and

  17. Red fluorescence in reef fish: A novel signalling mechanism?

    Directory of Open Access Journals (Sweden)

    Siebeck Ulrike E

    2008-09-01

    Full Text Available Abstract Background At depths below 10 m, reefs are dominated by blue-green light because seawater selectively absorbs the longer, 'red' wavelengths beyond 600 nm from the downwelling sunlight. Consequently, the visual pigments of many reef fish are matched to shorter wavelengths, which are transmitted better by water. Combining the typically poor long-wavelength sensitivity of fish eyes with the presumed lack of ambient red light, red light is currently considered irrelevant for reef fish. However, previous studies ignore the fact that several marine organisms, including deep sea fish, produce their own red luminescence and are capable of seeing it. Results We here report that at least 32 reef fishes from 16 genera and 5 families show pronounced red fluorescence under natural, daytime conditions at depths where downwelling red light is virtually absent. Fluorescence was confirmed by extensive spectrometry in the laboratory. In most cases peak emission was around 600 nm and fluorescence was associated with guanine crystals, which thus far were known for their light reflecting properties only. Our data indicate that red fluorescence may function in a context of intraspecific communication. Fluorescence patterns were typically associated with the eyes or the head, varying substantially even between species of the same genus. Moreover red fluorescence was particularly strong in fins that are involved in intraspecific signalling. Finally, microspectrometry in one fluorescent goby, Eviota pellucida, showed a long-wave sensitivity that overlapped with its own red fluorescence, indicating that this species is capable of seeing its own fluorescence. Conclusion We show that red fluorescence is widespread among marine fishes. Many features indicate that it is used as a private communication mechanism in small, benthic, pair- or group-living fishes. Many of these species show quite cryptic colouration in other parts of the visible spectrum. High inter

  18. Effect of Different Light Qualities on Growth, Pigment Content, Chlorophyll Fluorescence, and Antioxidant Enzyme Activity in the Red Alga Pyropia haitanensis (Bangiales, Rhodophyta).

    Science.gov (United States)

    Wu, Huanyang

    2016-01-01

    Spectral light changes evoke different morphogenetic and photosynthetic responses that can vary among different algae species. The aim of this study is to investigate the photosynthetic characteristics of the red macroalgae grown under different spectrum environments. In this study, Pyropia haitanensis were cultured under blue, red, and green LED and fluorescent tubes light. The growth rate, photopigment composition, chlorophyll fluorescence, and antioxidative enzymes activities in different light spectrums were investigated. The results revealed that growth rate was significantly higher in the thalli grown under blue, green, and fluorescent tubes light. Contents of Chl a and phycobiliprotein in red light were lower among all the growth conditions. Furthermore, a striking increase in SOD and CAT activity was observed in red light treatment along with the NPQ increase. The results revealed that the photosynthetic efficiency and increased growth rate of P. haitanensis benefitted from light spectrums such as blue, green, and fluorescent tubes light by pigment composition and photochemical efficiency manipulation, whereas red light has disadvantageous effects. Accordingly, the results for improving quality and the economic yield of algae species in some extent and the combination of different wavelengths could allow better economic resource exploitation.

  19. Effect of Different Light Qualities on Growth, Pigment Content, Chlorophyll Fluorescence, and Antioxidant Enzyme Activity in the Red Alga Pyropia haitanensis (Bangiales, Rhodophyta

    Directory of Open Access Journals (Sweden)

    Huanyang Wu

    2016-01-01

    Full Text Available Spectral light changes evoke different morphogenetic and photosynthetic responses that can vary among different algae species. The aim of this study is to investigate the photosynthetic characteristics of the red macroalgae grown under different spectrum environments. In this study, Pyropia haitanensis were cultured under blue, red, and green LED and fluorescent tubes light. The growth rate, photopigment composition, chlorophyll fluorescence, and antioxidative enzymes activities in different light spectrums were investigated. The results revealed that growth rate was significantly higher in the thalli grown under blue, green, and fluorescent tubes light. Contents of Chl a and phycobiliprotein in red light were lower among all the growth conditions. Furthermore, a striking increase in SOD and CAT activity was observed in red light treatment along with the NPQ increase. The results revealed that the photosynthetic efficiency and increased growth rate of P. haitanensis benefitted from light spectrums such as blue, green, and fluorescent tubes light by pigment composition and photochemical efficiency manipulation, whereas red light has disadvantageous effects. Accordingly, the results for improving quality and the economic yield of algae species in some extent and the combination of different wavelengths could allow better economic resource exploitation.

  20. Evaluation of diatomea algae Thalassiosira weissflogii sensitivity to chloride mercury and methylmercury by chlorophyll fluorescence analysis

    Science.gov (United States)

    Graevskaya, E. E.; Antal, T. K.; Matorin, D. N.; Voronova, E. N.; Pogosyan, S. I.; Rubin, A. B.

    2003-05-01

    Measurement of chlorophyll fluorescence has been shown to be a rapid, non-invasive, and reliable method to assess photosynthetic performance in a changing environment. In our study, the pulseamplitude-modulation (PAM) - fluorometric method was used to evaluate the sensitivity to chloride mercury and methylmercury chloride of diatomea microalgae Thalassiosira weissflogii. We found that 10^{-6} and 10^{-7} M MeHg led to a slow decrease in the PS II activity following for prolonged lag phase, whereas the algae was not sensitive to the same concentrations of HgCl2. However observed PS II inactivation by methylmercury was not complete and about 10 percents ofthe cells kept the high level of PS II activity as it was shown by microfluorometric analysis. These cells could determine adaptation of algae to methylmercury effect. Both toxicants decreased the rate of PS II reparation, as well as increased a heat pathway of excitation dissipation in PS II antennae complex.

  1. The Seasonal Cycle of Satellite Chlorophyll Fluorescence Observations and its Relationship to Vegetation Phenology and Ecosystem Atmosphere Carbon Exchange

    Science.gov (United States)

    Joiner, J.; Yoshida, Y.; Vasilkov, A. P.; Schaefer, K.; Jung, M.; Guanter, L.; Zhang, Y; Garrity, S.; Middleton, E. M.; Huemmrich, K. F.; hide

    2014-01-01

    Mapping of terrestrial chlorophyll uorescence from space has shown potentialfor providing global measurements related to gross primary productivity(GPP). In particular, space-based fluorescence may provide information onthe length of the carbon uptake period that can be of use for global carboncycle modeling. Here, we examine the seasonal cycle of photosynthesis asestimated from satellite fluorescence retrievals at wavelengths surroundingthe 740nm emission feature. These retrievals are from the Global OzoneMonitoring Experiment 2 (GOME-2) flying on the MetOp A satellite. Wecompare the fluorescence seasonal cycle with that of GPP as estimated froma diverse set of North American tower gas exchange measurements. Because the GOME-2 has a large ground footprint (40 x 80km2) as compared with that of the flux towers and requires averaging to reduce random errors, we additionally compare with seasonal cycles of upscaled GPP in the satellite averaging area surrounding the tower locations estimated from the Max Planck Institute for Biogeochemistry (MPI-BGC) machine learning algorithm. We also examine the seasonality of absorbed photosynthetically-active radiation(APAR) derived with reflectances from the MODerate-resolution Imaging Spectroradiometer (MODIS). Finally, we examine seasonal cycles of GPP as produced from an ensemble of vegetation models. Several of the data-driven models rely on satellite reflectance-based vegetation parameters to derive estimates of APAR that are used to compute GPP. For forested sites(particularly deciduous broadleaf and mixed forests), the GOME-2 fluorescence captures the spring onset and autumn shutoff of photosynthesis as delineated by the tower-based GPP estimates. In contrast, the reflectance-based indicators and many of the models tend to overestimate the length of the photosynthetically-active period for these and other biomes as has been noted previously in the literature. Satellite fluorescence measurements therefore show potential for

  2. Chlorophyll as a biomarker for early disease diagnosis

    Science.gov (United States)

    Manzoor Atta, Babar; Saleem, M.; Ali, Hina; Arshad, Hafiz Muhammad Imran; Ahmed, M.

    2018-06-01

    The current study was designed to identify the stage for the diagnosis of disease before visible symptoms appeared. Fluorescence spectroscopy has been employed to identify disease signatures for its early diagnosis in rice plant leaves. Bacterial leaf blight (BLB) diseased and healthy leaf samples were collected from the rice fields in September, 2017 which were then used to record spectra using an excitation wavelength at 410 nm. The spectral range of emission was set from 420 to 800 nm which covers the blue–green and the chlorophyll bands. It was found that diseased leaves have a narrower ‘chlorophyll a’ band than healthy ones, and furthermore, that the emission band at 730 nm was either declined or depleted in the sample with high infection symptoms. In contrast, the blue–green region was observed to increase due to the emergence of disease. As the band intensity of chlorophyll decreases during infection, this decrease in chlorophyll content and increase in the blue–green spectral region could provide a new approach for predicting BLB at an early stage. The important finding was that the chlorophyll degradation and rise in the blue–green region take place in leaves with BLB or during BLB infection. Principal component analysis has been applied to spectral data which successfully separated diseased samples from healthy ones even with very small spectral variations.

  3. Objective automated quantification of fluorescence signal in histological sections of rat lens.

    Science.gov (United States)

    Talebizadeh, Nooshin; Hagström, Nanna Zhou; Yu, Zhaohua; Kronschläger, Martin; Söderberg, Per; Wählby, Carolina

    2017-08-01

    Visual quantification and classification of fluorescent signals is the gold standard in microscopy. The purpose of this study was to develop an automated method to delineate cells and to quantify expression of fluorescent signal of biomarkers in each nucleus and cytoplasm of lens epithelial cells in a histological section. A region of interest representing the lens epithelium was manually demarcated in each input image. Thereafter, individual cell nuclei within the region of interest were automatically delineated based on watershed segmentation and thresholding with an algorithm developed in Matlab™. Fluorescence signal was quantified within nuclei, cytoplasms and juxtaposed backgrounds. The classification of cells as labelled or not labelled was based on comparison of the fluorescence signal within cells with local background. The classification rule was thereafter optimized as compared with visual classification of a limited dataset. The performance of the automated classification was evaluated by asking 11 independent blinded observers to classify all cells (n = 395) in one lens image. Time consumed by the automatic algorithm and visual classification of cells was recorded. On an average, 77% of the cells were correctly classified as compared with the majority vote of the visual observers. The average agreement among visual observers was 83%. However, variation among visual observers was high, and agreement between two visual observers was as low as 71% in the worst case. Automated classification was on average 10 times faster than visual scoring. The presented method enables objective and fast detection of lens epithelial cells and quantification of expression of fluorescent signal with an accuracy comparable with the variability among visual observers. © 2017 International Society for Advancement of Cytometry. © 2017 International Society for Advancement of Cytometry.

  4. High temperature stress monitoring and detection using chlorophyll a fluorescence and infrared thermography in chrysanthemum (Dendranthema grandiflora)

    DEFF Research Database (Denmark)

    Wakjera, Eshetu Janka; Körner, Oliver; Rosenqvist, Eva

    2013-01-01

    Modern highly insulated greenhouses are more energy efficient than conventional types. Furthermore applying dynamic greenhouse climate control regimes will increase energy efficiency relatively more in modern structures. However, this combination may result in higher air and crop temperatures. Too...... high temperature affects the plant photosynthetic responses, resulting in a lower rate of photosynthesis. To predict and analyse physiological responses as stress indicators, two independent experiments were conducted, to detect the effect of high temperature on photosynthesis: analysing photosystem II...... (PSII) and stomatal conductance (gs). A combination of chlorophyll a fluorescence, gas exchange measurements and infrared thermography was applied using Chrysanthemum (Dendranthema grandiflora Tzvelev) ‘Coral Charm’ as a model species. Increasing temperature had a highly significant effect on PSII when...

  5. Continuous Measurements of Canopy-level Solar-Induced Chlorophyll Fluorescence for Inferring Diurnal and Seasonal Dynamics of Photosynthesis in Crop Fields in the Midwestern USA

    Science.gov (United States)

    Miao, G.; Guan, K.; Yang, X.; Bernacchi, C.; DeLucia, E. H.; Cai, Y.; Masters, M. D.; Peng, B.

    2016-12-01

    Plants emitted photons of red and far-red light, called chlorophyll fluorescence, after sunlight absorption for photosynthesis. This solar-induced fluorescence (SIF) is generated simultaneously while plants actively photosynthesize. The link between photosynthesis and SIF resulting from the competition for the same excitation energy has long been investigated and applied for inferring the rate of photosynthesis. Recent development of continuous SIF observational technology is furthering the inferring potential as well as our understandings of fluctuations of SIF and photosynthesis with changes in environmental conditions. To better understand this photosynthesis-SIF link at multiple time scales and their relationships with environmental drivers, we deployed two newly developed tower-based SIF systems (FluoSpec) in a corn (Zea mays L., C4 plant) field and a soybean (Glycine max L., C3 plant) field at University of Illinois Energy Farm and conducted continuous near-surface SIF measurements at canopy scale from mid-growing season of 2016. Eddy covariance flux towers were installed in parallel at both sites for canopy-scale gas exchange measurements. Relationship between SIF and flux tower photosynthesis will be analyzed to derive the empirical models for photosynthesis retrieval from SIF signals. Preliminary results indicate that canopy SIF can reflect diurnal and seasonal dynamics of photosynthesis. Mechanistic analysis on SIF fluctuations and responses to environmental variations will be conducted as well for a closer look at mechanism of photosynthetic responses. Corn and soybean SIF and photosynthesis-SIF relationship will be compared to investigate the difference between C4 and C3 plants.

  6. Deep two-photon microscopic imaging through brain tissue using the second singlet state from fluorescent agent chlorophyll α in spinach leaf.

    Science.gov (United States)

    Shi, Lingyan; Rodríguez-Contreras, Adrián; Budansky, Yury; Pu, Yang; Nguyen, Thien An; Alfano, Robert R

    2014-06-01

    Two-photon (2P) excitation of the second singlet (S₂) state was studied to achieve deep optical microscopic imaging in brain tissue when both the excitation (800 nm) and emission (685 nm) wavelengths lie in the "tissue optical window" (650 to 950 nm). S₂ state technique was used to investigate chlorophyll α (Chl α) fluorescence inside a spinach leaf under a thick layer of freshly sliced rat brain tissue in combination with 2P microscopic imaging. Strong emission at the peak wavelength of 685 nm under the 2P S₂ state of Chl α enabled the imaging depth up to 450 μm through rat brain tissue.

  7. Cytochrome P450 CYP89A9 Is Involved in the Formation of Major Chlorophyll Catabolites during Leaf Senescence in Arabidopsis[W][OA

    Science.gov (United States)

    Christ, Bastien; Süssenbacher, Iris; Moser, Simone; Bichsel, Nicole; Egert, Aurelie; Müller, Thomas; Hörtensteiner, Stefan

    2013-01-01

    Nonfluorescent chlorophyll catabolites (NCCs) were described as products of chlorophyll breakdown in Arabidopsis thaliana. NCCs are formyloxobilin-type catabolites derived from chlorophyll by oxygenolytic opening of the chlorin macrocycle. These linear tetrapyrroles are generated from their fluorescent chlorophyll catabolite (FCC) precursors by a nonenzymatic isomerization inside the vacuole of senescing cells. Here, we identified a group of distinct dioxobilin-type chlorophyll catabolites (DCCs) as the major breakdown products in wild-type Arabidopsis, representing more than 90% of the chlorophyll of green leaves. The molecular constitution of the most abundant nonfluorescent DCC (NDCC), At-NDCC-1, was determined. We further identified cytochrome P450 monooxygenase CYP89A9 as being responsible for NDCC accumulation in wild-type Arabidopsis; cyp89a9 mutants that are deficient in CYP89A9 function were devoid of NDCCs but accumulated proportionally higher amounts of NCCs. CYP89A9 localized outside the chloroplasts, implying that FCCs occurring in the cytosol might be its natural substrate. Using recombinant CYP89A9, we confirm FCC specificity and show that fluorescent DCCs are the products of the CYP89A9 reaction. Fluorescent DCCs, formed by this enzyme, isomerize to the respective NDCCs in weakly acidic medium, as found in vacuoles. We conclude that CYP89A9 is involved in the formation of dioxobilin-type catabolites of chlorophyll in Arabidopsis. PMID:23723324

  8. A study of the low-lying singlet and triplet electronic states of chlorophyll A and B

    Directory of Open Access Journals (Sweden)

    Etinski Mihajlo

    2013-01-01

    Full Text Available Chlorophylls have been extensively investigated both experimentally and theoretically owing to the fact that they are essential for photosynthesis. We have studied two forms of chlorophyll, chlorophyll a and chlorophyll b, by means of density functional theory. Optimization of S0, S1 and T1 states was performed with the B3-LYP functional. The computed fluorescence lifetimes show good agreement with the available experimental data. The electronic adiabatic energies of S1 and T1 states are 2.09/2.12 and 1.19/1.29 eV for chlorophyll a and chlorophyll b respectively. We discussed the implications of this results on the triplet formation. Also, the calculated vertical ionization potentials shows good agreement with the experimental results. [Projekat Ministarstva nauke Reoublike Srbije, br. 172040

  9. A Comparison between Local and Global Spaceborne Chlorophyll Indices in the St. Lawrence Estuary

    Directory of Open Access Journals (Sweden)

    Martin A. Montes-Hugo

    2012-11-01

    Full Text Available Spaceborne chlorophyll indices based on red fluorescence (wavelength = 680 nm and water leaving radiance (Lw in the visible spectrum (i.e., 400–700 nm were evaluated in the St Lawrence Estuary (SLE during September of 2011. Relationships between chlorophyll concentration (chl and fluorescence were constructed based on fluorescence line height (FLH measurements derived from a compact laser-based spectrofluorometer developed by ENEA (CASPER and using spectral bands corresponding to the satellite sensor MERIS (MEdium Resolution Imaging Spectrometer. Chlorophyll concentration as estimated from CASPER (chlCASPER was relatively high NE of the MTZ (upper Estuary, and nearby areas influenced by fronts or freshwater plumes derived from secondary rivers (lower estuary. These findings agree with historical shipboard measurements. In general, global chl products calculated from Lw had large biases (up to 27-fold overestimation and 50-fold underestimation with respect to chlCASPER values. This was attributed to the smaller interference of detritus (mineral + organic non-living particulates and chromophoric dissolved organic matter on chlCASPER estimates. We encourage the use of spectrofluorometry for developing and validating remote sensing models of chl in SLE waters and other coastal environments characterized by relatively low to moderate (<10 g·m−3 concentrations of detritus.

  10. Gas exchange and chlorophyll fluorescence of pea (Pisum sativum L.) plants in response to ambient ozone at a rural site in Egypt

    Energy Technology Data Exchange (ETDEWEB)

    Ismail, I.M.; Basahi, J.M. [Air Pollution Laboratory (APL), Centre of Excellence in Environmental Studies (CEES), King Abdulaziz University, P. O. Box 80216, Jeddah 21589 (Saudi Arabia); Hassan, I.A., E-mail: ihassan_eg@yahoo.com [Air Pollution Laboratory (APL), Centre of Excellence in Environmental Studies (CEES), King Abdulaziz University, P. O. Box 80216, Jeddah 21589 (Saudi Arabia); Department of Botany, Faculty of Science, Alexandria University, 21526 El Shatby, Alexandria (Egypt)

    2014-11-01

    Egyptian pea cultivars (Pisum sativum L. cultivars Little Marvel, Perfection and Victory) grown in open-top chambers were exposed to either charcoal-filtered (FA) or non-filtered air (NF) for five consecutive years (2009–2013) at a rural site in northern Egypt. Net photosynthetic rates (P{sub N}), stomatal conductance (g{sub s}), intercellular CO{sub 2} (C{sub i}) and chlorophyll fluorescence were measured. Ozone (O{sub 3}) was found to be the most prevalent pollutant common at the rural site and is suspected to be involved in the alteration of the physiological parameters measured in the present investigation. P{sub N} of different cultivars were found to respond similarly; decreases of 23, 29 and 39% were observed in the cultivars Perfection, Little Marvel and Victory, respectively (averaged over the five years) due to ambient O{sub 3}. The maximum impairment in P{sub N} was recorded in the cultivar Victory (46%) in 2013 when the highest O{sub 3} levels were recorded (90 nL L{sup −1}). The average stomatal conductance decreased by 20 and 18% in the cultivars Little Marvel and Perfection, respectively, while the average stomatal conductance increased on average by 27% in the cultivar Victory. A significant correlation was found between P{sub N} and C{sub i}, indicating the importance of non-stomatal limitations of photosynthesis, especially in the cultivar Victory. The P{sub N} vs. Ci curves were fitted to a non-rectangular hyperbolic model. The actual quantum yield (Φ{sub PSII}) and photochemical quenching coefficient (qP) were significantly decreased in the leaves of plants exposed to NF air. Non-photochemical quenching (NPQ) was increased in all cultivars. Exposure to NF air caused reductions in chlorophyll (Chl a) of 19, 16 and 30% in the Little Marvel, Perfection and Victory cultivars, respectively. - Highlights: • Ozone (O{sub 3}) concentrations recorded were within the ranges of phytotoxicity. • O{sub 3} has a clear influence on the physiological

  11. Field trial of a dual-wavelength fluorescent emission (L.I.F.E.) instrument and the Magma White rover during the MARS2013 Mars analog mission.

    Science.gov (United States)

    Groemer, Gernot; Sattler, Birgit; Weisleitner, Klemens; Hunger, Lars; Kohstall, Christoph; Frisch, Albert; Józefowicz, Mateusz; Meszyński, Sebastian; Storrie-Lombardi, Michael; Bothe, Claudia; Boyd, Andrea; Dinkelaker, Aline; Dissertori, Markus; Fasching, David; Fischer, Monika; Föger, Daniel; Foresta, Luca; Frischauf, Norbert; Fritsch, Lukas; Fuchs, Harald; Gautsch, Christoph; Gerard, Stephan; Goetzloff, Linda; Gołebiowska, Izabella; Gorur, Paavan; Groemer, Gerhard; Groll, Petra; Haider, Christian; Haider, Olivia; Hauth, Eva; Hauth, Stefan; Hettrich, Sebastian; Jais, Wolfgang; Jones, Natalie; Taj-Eddine, Kamal; Karl, Alexander; Kauerhoff, Tilo; Khan, Muhammad Shadab; Kjeldsen, Andreas; Klauck, Jan; Losiak, Anna; Luger, Markus; Luger, Thomas; Luger, Ulrich; McArthur, Jane; Moser, Linda; Neuner, Julia; Orgel, Csilla; Ori, Gian Gabriele; Paternesi, Roberta; Peschier, Jarno; Pfeil, Isabella; Prock, Silvia; Radinger, Josef; Ragonig, Christoph; Ramirez, Barbara; Ramo, Wissam; Rampey, Mike; Sams, Arnold; Sams, Elisabeth; Sams, Sebastian; Sandu, Oana; Sans, Alejandra; Sansone, Petra; Scheer, Daniela; Schildhammer, Daniel; Scornet, Quentin; Sejkora, Nina; Soucek, Alexander; Stadler, Andrea; Stummer, Florian; Stumptner, Willibald; Taraba, Michael; Tlustos, Reinhard; Toferer, Ernst; Turetschek, Thomas; Winter, Egon; Zanella-Kux, Katja

    2014-05-01

    Abstract We have developed a portable dual-wavelength laser fluorescence spectrometer as part of a multi-instrument optical probe to characterize mineral, organic, and microbial species in extreme environments. Operating at 405 and 532 nm, the instrument was originally designed for use by human explorers to produce a laser-induced fluorescence emission (L.I.F.E.) spectral database of the mineral and organic molecules found in the microbial communities of Earth's cryosphere. Recently, our team had the opportunity to explore the strengths and limitations of the instrument when it was deployed on a remote-controlled Mars analog rover. In February 2013, the instrument was deployed on board the Magma White rover platform during the MARS2013 Mars analog field mission in the Kess Kess formation near Erfoud, Morocco. During these tests, we followed tele-science work flows pertinent to Mars surface missions in a simulated spaceflight environment. We report on the L.I.F.E. instrument setup, data processing, and performance during field trials. A pilot postmission laboratory analysis determined that rock samples acquired during the field mission exhibited a fluorescence signal from the Sun-exposed side characteristic of chlorophyll a following excitation at 405 nm. A weak fluorescence response to excitation at 532 nm may have originated from another microbial photosynthetic pigment, phycoerythrin, but final assignment awaits development of a comprehensive database of mineral and organic fluorescence spectra. No chlorophyll fluorescence signal was detected from the shaded underside of the samples.

  12. Assimilation of remotely sensed chlorophyll fluorescence data into the land surface model CLM4

    Science.gov (United States)

    Wieneke, S.; Ahrends, H. E.; Rascher, U.; Schween, J.; Schickling, A.; Crewell, S.

    2013-12-01

    Photosynthesis is the most important exchange process of CO2 between the atmosphere and the land-surface. Therefore, the prediction of vegetation response to environmental conditions like increasing CO2 concentrations or plant stress is crucial for a reliable prediction of climate change. Photosynthesis is a complex physiological process that consists of numerous bio-physical sub-processes and chemical reactions. Spatial and temporal patterns of photosynthesis depend on dynamic plant-specific adaptation strategies to highly variable environmental conditions. Photosynthesis can be estimated using land-surface models, but, while state-of-the-art models often rely on Plant Functional Type (PFT) specific constants, they poorly simulate the dynamic adaptation of the physiological status of plant canopies in space and time. Remotely sensed sun-induced chlorophyll fluorescence (SICF) gives us now the possibility to estimate the diurnal dynamic vitality of the photosynthetic apparatus at both, the leaf and canopy levels. We installed within the framework of the Transregio32 project (www.tr32.de) automated hyperspectral fluorescence sensors at an agricultural site (winter wheat) in the Rur catchment area in West Germany at the end of July 2012. End of August, additional measurements of SIFC on nearby temperate grassland site (riparian meadow) and on a sugar beet field were performed. Spatial covering SICF data of the region were obtained during a measurement campaign using the newly developed air-borne hyperspectral sensor HyPlant on the 23 and 27 August 2012. SIFC data and data provided by eddy covariance measurements will be used to update certain model parameters that are normally set as constants. First model results demonstrate that the assimilation of SIFC into the Community Land Model 4 (CLM4) will result in a more realistic simulation of plant-specific adaptation strategies and therefore in a more realistic simulation of photosynthesis in space and time.

  13. Chlorophyll fluorescence response to water and nitrogen deficit

    Science.gov (United States)

    Cendrero Mateo, Maria del Pilar

    The increasing food demand as well as the need to predict the impact of warming climate on vegetation makes it critical to find the best tools to assess crop production and carbon dioxide (CO2) exchange between the land and atmosphere. Photosynthesis is a good indicator of crop production and CO2 exchange. Chlorophyll fluorescence (ChF) is directly related to photosynthesis. ChF can be measured at leaf-scale using active techniques and at field-scales using passive techniques. The measurement principles of both techniques are different. In this study, three overarching questions about ChF were addressed: Q1) How water, nutrient and ambient light conditions determine the relationships between photosynthesis and ChF? Which is the optimum irradiance level for detecting water and nutrient deficit conditions with ChF? ; Q2) which are the limits within which active and passive techniques are comparable?; and Q3) What is the seasonal relationship between photosynthesis and ChF when nitrogen is the limiting factor? To address these questions, two main experiments were conducted: Exp1) Concurrent photosynthesis and ChF light-response curves were measured in camelina and wheat plants growing under (i) intermediate-light and (ii) high-light conditions respectively. Plant stress was induced by (i) withdrawing water, and (ii) applying different nitrogen levels; and Exp2) coincident active and passive ChF measurements were made in a wheat field under different nitrogen treatments. The results indicated ChF has a direct relationship with photosynthesis when water or nitrogen drives the relationship. This study demonstrates that the light level at which plants were grown was optimum for detecting water and nutrient deficit with ChF. Also, the results showed that for leaf-average-values, active measurements can be used to better understand the daily and seasonal behavior of passive ChF. Further, the seasonal relation between photosynthesis and ChF with nitrogen stress was not a

  14. Changes in the fluorescence of the Caribbean coral Montastraea faveolata during heat-induced bleaching

    Science.gov (United States)

    Zawada, David G.; Jaffe, J.S.

    2003-01-01

    In order to evaluate the response of commonly occurring green and orange fluorescent host-based pigments, a thermal stress experiment was performed on specimens of the Caribbean coral Montastraea faveolata. Seven paired samples were collected from a small oceanic reef near Lee Stocking Island in the Bahamas. Seven of the fourteen corals were subjected to elevated temperatures for 28 d, followed by a recovery period lasting 53 d. Throughout the experiment, high-resolution (~400 µm pixel-1) multispectral images of induced fluorescence were recorded at wavelengths corresponding to the green and orange host pigments, plus chlorophyll. These images revealed that the fluorescence of both host pigments was concentrated at polyp centers and declined by 70–90% in regions between polyps. Chlorophyll fluorescence, however, was distributed almost uniformly across the entire coral surface, but with decreases of 10–30% around polyp centers. A normalized difference ratio between the green and orange pigments (GO ratio) was developed to facilitate comparison with chlorophyll fluorescence as a bleaching indicator. Analysis showed a high correspondence between a sustained GO ratio of less than zero and the death of corals. Finally, this ratio was resistant to contamination from other sources of chlorophyll fluorescence, such as filamentous algae.

  15. Comparison of chlorophyll in the Red Sea derived from MODIS-Aqua and in vivo fluorescence

    KAUST Repository

    Brewin, Robert J W

    2013-09-01

    The Red Sea is a unique marine environment but relatively unexplored. The only available long-term biological dataset at large spatial and temporal scales is remotely-sensed chlorophyll observations (an index of phytoplankton biomass) derived using satellite measurements of ocean colour. Yet such observations have rarely been compared with in situ data in the Red Sea. In this paper, satellite chlorophyll estimates in the Red Sea from the MODIS instrument onboard the Aqua satellite are compared with three recent cruises of in vivo fluorometric chlorophyll measurements taken in October 2008, March 2010 and September to October 2011. The performance of the standard NASA chlorophyll algorithm, and that of a new band-difference algorithm, is found to be comparable with other oligotrophic regions in the global ocean, supporting the use of satellite ocean colour in the Red Sea. However, given the unique environmental conditions of the study area, regional algorithms are likely to fare better and this is demonstrated through a simple adjustment to the band-difference algorithm. © 2013 Elsevier Inc.

  16. Strong constraint on modelled global carbon uptake using solar-induced chlorophyll fluorescence data.

    Science.gov (United States)

    MacBean, Natasha; Maignan, Fabienne; Bacour, Cédric; Lewis, Philip; Peylin, Philippe; Guanter, Luis; Köhler, Philipp; Gómez-Dans, Jose; Disney, Mathias

    2018-01-31

    Accurate terrestrial biosphere model (TBM) simulations of gross carbon uptake (gross primary productivity - GPP) are essential for reliable future terrestrial carbon sink projections. However, uncertainties in TBM GPP estimates remain. Newly-available satellite-derived sun-induced chlorophyll fluorescence (SIF) data offer a promising direction for addressing this issue by constraining regional-to-global scale modelled GPP. Here, we use monthly 0.5° GOME-2 SIF data from 2007 to 2011 to optimise GPP parameters of the ORCHIDEE TBM. The optimisation reduces GPP magnitude across all vegetation types except C4 plants. Global mean annual GPP therefore decreases from 194 ± 57 PgCyr -1 to 166 ± 10 PgCyr -1 , bringing the model more in line with an up-scaled flux tower estimate of 133 PgCyr -1 . Strongest reductions in GPP are seen in boreal forests: the result is a shift in global GPP distribution, with a ~50% increase in the tropical to boreal productivity ratio. The optimisation resulted in a greater reduction in GPP than similar ORCHIDEE parameter optimisation studies using satellite-derived NDVI from MODIS and eddy covariance measurements of net CO 2 fluxes from the FLUXNET network. Our study shows that SIF data will be instrumental in constraining TBM GPP estimates, with a consequent improvement in global carbon cycle projections.

  17. [Effects of drought stress on leaf gas exchange and chlorophyll fluorescence of Salvia miltiorrhiza].

    Science.gov (United States)

    Luo, Ming-Hua; Hu, Jin-Yao; Wu, Qing-Gui; Yang, Jing-Tian; Su, Zhi-Xian

    2010-03-01

    Taking the seedlings of Salvia miltiorrhiza cv. Sativa (SA) and S. miltiorrhiza cv. Silcestris (SI) as test materials, this paper studied the effects of drought stress on their leaf gas exchange and chlorophyll fluorescence parameters. After 15 days of drought stress, the net photosynthetic rate (P(n)) and the maximal photochemical efficiency of PS II (F(v)/F(m)) of SA were decreased by 66.42% and 10.98%, whereas those of SI were decreased by 29.32% and 5.47%, respectively, compared with the control, suggesting that drought stress had more obvious effects on the P(n) and F(v)/F(m) of SA than of SI. For SI, the reduction of P, under drought stress was mainly due to stomatal limitation; while for SA, it was mainly due to non-stomatal limitation. Drought led to a decrease of leaf stomatal conductance (G(s)), but induced the increase of water use efficiency (WUE), non-photochemical quenching coefficient (q(N)), and the ratio of photorespiration rate to net photosynthetic rate (P(r)/P(n)), resulting in the enhancement of drought resistance. The increment of WUE, q(N), and P(r)/P(n) was larger for SI than for SA, indicating that SI had a higher drought resistance capacity than SA.

  18. Simulating fluorescence light-canopy interaction in support of laser-induced fluorescence measurements

    International Nuclear Information System (INIS)

    Rosema, A.; Verhoef, W.; Schroote, J.; Snel, J.F.H.

    1991-01-01

    In the Netherlands an operational field instrument for the measurement of laser induced fluorescence of vegetation (LEAF) is developed. In addition, plant physiological and remote sensing research is done to support this new remote sensing instrument. This paper presents a general introduction on the subject of laser-induced fluorescence, including the relation between chlorophyll fluorescence and photosynthesis, spectral characteristics, and previous research. Also the LEAF system is briefly described. Subsequently, the development of a leaf fluorescence model (KMF) and a canopy fluorescence model (FLSAIL) are reported. With these simulation models a sensitivity study is carried out. Fluorescence of 685 nm appears to be most suitable to obtain information on photosynthesis and stress, but is also influenced by canopy structure. Separation of these two effects is studied

  19. Atmospheric CO2 Observations Reveal Strong Correlation Between Regional Net Biospheric Carbon Uptake and Solar-Induced Chlorophyll Fluorescence

    Science.gov (United States)

    Shiga, Yoichi P.; Tadić, Jovan M.; Qiu, Xuemei; Yadav, Vineet; Andrews, Arlyn E.; Berry, Joseph A.; Michalak, Anna M.

    2018-01-01

    Recent studies have shown the promise of remotely sensed solar-induced chlorophyll fluorescence (SIF) in informing terrestrial carbon exchange, but analyses have been limited to either plot level ( 1 km2) or hemispheric/global ( 108 km2) scales due to the lack of a direct measure of carbon exchange at intermediate scales. Here we use a network of atmospheric CO2 observations over North America to explore the value of SIF for informing net ecosystem exchange (NEE) at regional scales. We find that SIF explains space-time NEE patterns at regional ( 100 km2) scales better than a variety of other vegetation and climate indicators. We further show that incorporating SIF into an atmospheric inversion leads to a spatial redistribution of NEE estimates over North America, with more uptake attributed to agricultural regions and less to needleleaf forests. Our results highlight the synergy of ground-based and spaceborne carbon cycle observations.

  20. The Effect of Sugar Beet Broadleaf Herbicides on Fluorescence Induction Curves in Amaranthus retroflexus L. and Portulaca oleracea L.

    Directory of Open Access Journals (Sweden)

    Ali Asghar CHITBAND

    2017-09-01

    Full Text Available Chlorophyll fluorescence analysis is a simple and rapid method for detecting herbicide effects after a short time following their application in photosynthetic apparatus in plants. Chlorophyll fluorescence measurements were carried out against two broad of weeds to describe how the Kautsky curve and its parameters were affected by herbicides. Desmedipham + phenmedipham + ethofumesate changed the chlorophyll fluorescence induction curve at all time intervals except four hours after spring (HAS in Amaranthus retroflexus L. and at all doses of Portulaca oleracea L. 4 HAS. In contrast, chlorophyll fluorescence inhibition was evident by chloridazon at doses of 650 and 325 g a.i. ha-1 in P. oleracea and A. retroflexus respectively, for all time intervals. Furthermore, chlorophyll fluorescence decays only occurred by clopyralid in A. retroflexus at the highest dose. A biomass effective dose (ED50 and/or ED90 based on log-logistic dose-response curves for A. retroflexus were considerably higher than that of P. oleracea. The maximum quantum efficiency (FV/Fm was stable, whereas the relative changes at the J step (Fvj and area (the area between the Kautsky curve and the maximum fluorescence (Fm was more sensitive to all three herbicides. There was a relatively good correlation between fluorescence parameters taken 24 hours after the spraying and the dry matter taken three weeks later, for both species under study.

  1. Larval vision contributes to gregarious settlement in barnacles: adult red fluorescence as a possible visual signal

    KAUST Repository

    Matsumura, K.; Qian, P.-Y.

    2014-01-01

    surfaces. Moreover, we found that shells of adult B. amphitrite emit red auto-fluorescence and the adult extracts with the fluorescence as a visual signal attracted cyprid larvae to settle around it. We propose that the perception of specific visual signals

  2. Energy transfer from carotenoids to chlorophyll in blue-green, red and green algae and greening bean leaves

    NARCIS (Netherlands)

    Goedheer, J.C.

    1969-01-01

    From fluorescence action spectra, fluorescence spectra and absorption spectra measured at room temperature and at 77 °K of light petroleum (b.p. 40–60°)-treated and normal chloroplasts, it is concluded that: 1. 1. In blue-green and red algae energy transfer from β-carotene to chlorophyll occurs

  3. Identification of the 7-Hydroxymethyl Chlorophyll a Reductase of the Chlorophyll Cycle in Arabidopsis[W

    Science.gov (United States)

    Meguro, Miki; Ito, Hisashi; Takabayashi, Atsushi; Tanaka, Ryouichi; Tanaka, Ayumi

    2011-01-01

    The interconversion of chlorophyll a and chlorophyll b, referred to as the chlorophyll cycle, plays a crucial role in the processes of greening, acclimation to light intensity, and senescence. The chlorophyll cycle consists of three reactions: the conversions of chlorophyll a to chlorophyll b by chlorophyllide a oxygenase, chlorophyll b to 7-hydroxymethyl chlorophyll a by chlorophyll b reductase, and 7-hydroxymethyl chlorophyll a to chlorophyll a by 7-hydroxymethyl chlorophyll a reductase. We identified 7-hydroxymethyl chlorophyll a reductase, which is the last remaining unidentified enzyme of the chlorophyll cycle, from Arabidopsis thaliana by genetic and biochemical methods. Recombinant 7-hydroxymethyl chlorophyll a reductase converted 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin. Both sequence and biochemical analyses showed that 7-hydroxymethyl chlorophyll a reductase contains flavin adenine dinucleotide and an iron-sulfur center. In addition, a phylogenetic analysis elucidated the evolution of 7-hydroxymethyl chlorophyll a reductase from divinyl chlorophyllide vinyl reductase. A mutant lacking 7-hydroxymethyl chlorophyll a reductase was found to accumulate 7-hydroxymethyl chlorophyll a and pheophorbide a. Furthermore, this accumulation of pheophorbide a in the mutant was rescued by the inactivation of the chlorophyll b reductase gene. The downregulation of pheophorbide a oxygenase activity is discussed in relation to 7-hydroxymethyl chlorophyll a accumulation. PMID:21934147

  4. Validation of MODIS FLH and In Situ Chlorophyll a from Tampa Bay, Florida (USA)

    Science.gov (United States)

    Fischer, Andrew; MorenoMadrinan, Max J.

    2012-01-01

    Satellite observation of phytoplankton concentration or chlorophyll-a (chla) is an important characteristic, critically integral to monitoring coastal water quality. However, the optical properties of estuarine and coastal waters are highly variable and complex and pose a great challenge for accurate analysis. Constituents such as suspended solids and dissolved organic matter and the overlapping and uncorrelated absorptions in the blue region of the spectrum renders the blue-green ratio algorithms for estimating chl-a inaccurate. Measurement of suninduced chlorophyll fluorescence, on the other hand, which utilizes the near infrared portion of the electromagnetic spectrum may, provide a better estimate of phytoplankton concentrations. While modelling and laboratory studies have illustrated both the utility and limitations of satellite algorithms based on the sun induced chlorophyll fluorescence signal, few have examined the empirical validity of these algorithms or compared their accuracy against bluegreen ratio algorithms . In an unprecedented analysis using a long term (2003-2011) in situ monitoring data set from Tampa Bay, Florida (USA), we assess the validity of the FLH product from the Moderate Resolution Imaging Spectrometer against a suite of water quality parameters taken in a variety of conditions throughout this large optically complex estuarine system. . Overall, the results show a 106% increase in the validity of chla concentration estimation using FLH over the standard chla estimate from the blue-green OC3M algorithm. Additionally, a systematic analysis of sampling sites throughout the bay is undertaken to understand how the FLH product responds to varying conditions in the estuary and correlations are conducted to see how the relationships between satellite FLH and in situ chlorophyll-a change with depth, distance from shore, from structures like bridges, and nutrient concentrations and turbidity. Such analysis illustrates that the correlations between

  5. Effects of Different Metals on Photosynthesis: Cadmium and Zinc Affect Chlorophyll Fluorescence in Durum Wheat

    Directory of Open Access Journals (Sweden)

    Momchil Paunov

    2018-03-01

    Full Text Available A comparative study of the effects of exposure to high Cd2+ (50 µM and excess Zn2+ (600 µM on photosynthetic performance of hydroponically-grown durum wheat seedlings was performed. At day 8, Cd and Zn were added to the nutrient solution. After 7-days exposure, the chosen concentrations of both metals resulted in similar relative growth rate (RGR inhibitions of about 50% and comparable retardations of the CO2 assimilation rates (about 30% in the second developed leaf of wheat seedlings. Analysis of chlorophyll a fluorescence indicated that both metals disturbed photosynthetic electron transport processes which led to a 4- to 5-fold suppression of the efficiency of energy transformation in Photosystem II. Non-specific toxic effects of Cd and Zn, which prevailed, were an inactivation of part of Photosystem II reaction centres and their transformation into excitation quenching forms as well as disturbed electron transport in the oxygen-evolving complex. The specificity of the Cd and Zn modes of action was mainly expressed in the intensity of the toxicity effects: despite the similar inhibitions of the CO2 assimilation rates, the wheat photochemistry showed much more sensitivity to Cd than to Zn exposure.

  6. Analysis of chlorophyll fluorescence reveals stage specific patterns of chloroplast-containing cells during Arabidopsis embryogenesis

    Directory of Open Access Journals (Sweden)

    RICARDO I TEJOS

    2010-01-01

    Full Text Available The basic body plan of a plant is established early in embryogenesis when cells differentiate, giving rise to the apical and basal regions of the embryo. Using chlorophyll fluorescence as a marker for chloroplasts, we have detected specific patterns of chloroplast-containing cells at specific stages of embryogenesis. Non-randomly distributed chloroplast-containing cells are seen as early as the globular stage of embryogenesis in Arabidopsis. In the heart stage of embryogenesis, chloroplast containing cells are detected in epidermal cells as well as a central region of the heart stage embryo, forming a triangular septum of chloroplast-containing cells that divides the embryo into three equal sectors. Torpedo stage embryos have chloroplast-containing epidermal cells and a central band of chloroplast-containing cells in the cortex layer, just below the shoot apical meristem. In the walking-stick stage of embryogenesis, chloroplasts are present in the epidermal, cortex and endodermal cells. The chloroplasts appear reduced or absent from the provascular and columella cells of walking-stick stage embryos. These results suggest that there is a tight regulation of plastid differentiation during embryogenesis that generates specific patterns of chloroplast-containing cells in specific cell layers at specific stages of embryogenesis.

  7. Teaching laser-induced fluorescence of plant leaves

    Science.gov (United States)

    Lenk, Sándor; Gádoros, Patrik; Kocsányi, László; Barócsi, Attila

    2016-11-01

    Plants convert carbon dioxide into sugars using the energy of sunlight. Absorbed light unused for conversion is dissipated primarily as heat with a small fraction re-emitted as fluorescence at longer wavelengths. One can use the latter to estimate photosynthetic activity. The illumination of intact leaves with strong light after keeping them in dark for tens of minutes results in a rapid increase followed by a slow decay of fluorescence emission from the fluorophore chlorophyll-a, called the Kautsky effect. This paper describes a laboratory practice that introduces students of physics or engineering into this research field. It begins with the spectral measurement of the fluorescence emitted by a plant leaf upon UV excitation. Then it focuses on the red and far-red components of the fluorescence emission spectrum characteristic to the chlorophyll-a molecule and presents an inexpensive demonstration of the Kautsky effect. As researchers use more complex measurement techniques and tools, the practice ends up with the demonstration of an intelligent fluorosensor, a compact tool developed for plant physiological research and horticulture applications together with a brief interpretation of some important fluorescence parameters.

  8. Teaching laser-induced fluorescence of plant leaves

    International Nuclear Information System (INIS)

    Lenk, Sándor; Gádoros, Patrik; Kocsányi, László; Barócsi, Attila

    2016-01-01

    Plants convert carbon dioxide into sugars using the energy of sunlight. Absorbed light unused for conversion is dissipated primarily as heat with a small fraction re-emitted as fluorescence at longer wavelengths. One can use the latter to estimate photosynthetic activity. The illumination of intact leaves with strong light after keeping them in dark for tens of minutes results in a rapid increase followed by a slow decay of fluorescence emission from the fluorophore chlorophyll -a , called the Kautsky effect. This paper describes a laboratory practice that introduces students of physics or engineering into this research field. It begins with the spectral measurement of the fluorescence emitted by a plant leaf upon UV excitation. Then it focuses on the red and far-red components of the fluorescence emission spectrum characteristic to the chlorophyll -a molecule and presents an inexpensive demonstration of the Kautsky effect. As researchers use more complex measurement techniques and tools, the practice ends up with the demonstration of an intelligent fluorosensor, a compact tool developed for plant physiological research and horticulture applications together with a brief interpretation of some important fluorescence parameters. (paper)

  9. Studies on liposomes with Chlorophyll for monitoring the electromagnetic influence at molecular level

    International Nuclear Information System (INIS)

    Tugulea, Laura; Miclaus, Simona; Iacovache, Ioan

    2001-01-01

    The liposomes with Chlorophyll are excellent model membranes and could be successfully used to study the electromagnetic influence at molecular level. The strong visible absorption and fluorescence of Chlorophyll allow its use as sensor for the interactions at molecular level and as a fluorescence marker; it reflects certain aspects of the supramolecular structure of the lipid phase: fluidity, lipid and liposomes aggregation. The objective of our work was to evidence athermal effect of low level, pulsed microwave (MW) fields on liposomes and to evidence the possible mechanism of interaction at molecular level. Unilamellar liposomes were obtained from multilamellar vesicles by the hand-shaken method and sonication for 30 minutes. The multilamellar vesicles were prepared using Chla /lipid films with specific molar ratio (lipid/Chla 1/10 and 1/100) and different lipids (Dipalmitoyl phosphatidylcholine, Dimirystoyl Phosphatidylcholine and Dioleoyl Phosphatidylcholine-Sigma). The films were dispersed in buffer solutions of different pH (6.2 - 7.6). The Chlorophyll was freshly extracted from spinach leaves and separated by the chromatographic method. Portions of liposome suspension (0.6 ml) were inserted into Teflon cuvettes. The samples were irradiated in series, for periods of 5-30 minutes. The exposure system was: MW generator + adapted load (shortened rectangular waveguide) + Teflon cuvette filled with sample liquid. The effect of MW irradiation is not observable on multilamellar vesicles, but only on small unilamellar vesicles. The MW effect is athermal, verified by conventional heating in the same range of temperatures and results in enlarging the size of vesicles. The enlarging effect of MW is opposed to the effect of ultrasounds exposure. It is not clear if effects due to MW are proportional with exposure duration; it seems that this mostly depends on the type of lipid in vesicles. The UV and VIS spectra were recorded to observe the oxidation state of the

  10. Indicators: Chlorophyll a

    Science.gov (United States)

    Chlorophyll allows plants (including algae) to photosynthesize, i.e., use sunlight to convert simple molecules into organic compounds. Chlorophyll a is the predominant type of chlorophyll found in green plants and algae.

  11. RNA signal amplifier circuit with integrated fluorescence output.

    Science.gov (United States)

    Akter, Farhima; Yokobayashi, Yohei

    2015-05-15

    We designed an in vitro signal amplification circuit that takes a short RNA input that catalytically activates the Spinach RNA aptamer to produce a fluorescent output. The circuit consists of three RNA strands: an internally blocked Spinach aptamer, a fuel strand, and an input strand (catalyst), as well as the Spinach aptamer ligand 3,5-difluoro-4-hydroxylbenzylidene imidazolinone (DFHBI). The input strand initially displaces the internal inhibitory strand to activate the fluorescent aptamer while exposing a toehold to which the fuel strand can bind to further displace and recycle the input strand. Under a favorable condition, one input strand was able to activate up to five molecules of the internally blocked Spinach aptamer in 185 min at 30 °C. The simple RNA circuit reported here serves as a model for catalytic activation of arbitrary RNA effectors by chemical triggers.

  12. Instability of chlorophyll in yellow lupin seedlings grown in soil contaminated with ciprofloxacin and tetracycline.

    Science.gov (United States)

    Rydzyński, Dariusz; Piotrowicz-Cieślak, Agnieszka I; Grajek, Hanna; Michalczyk, Dariusz J

    2017-10-01

    With increasing soil concentrations of ciprofloxacin and tetracycline a decrease of leaf chlorophyll content was observed. Tetracycline was more detrimental than ciprofloxacin. The chlorophyll content in plants growing for ten days on a tetracycline containing soil decreased by 68%. The decrease of chlorophyll concentration was even sharper in new leaves that formed after application of the antibiotic (up to 81% drop). The comparison of absorption spectra of commercial, reagent grade chlorophyll, alone and incubated with antibiotics, has shown that ciprofloxacin and tetracycline can react directly with chlorophyll and decrease its concentration by 47.7% and 48.5%, respectively. The changes in fluorescence spectra confirmed the formation of chlorophyll degradation product. The chlorophyll decay was a second order reaction and depended on antibiotic concentration and duration of exposure. Reaction rate constants differed with antibiotics and their soil concentrations. With increasing contents of antibiotics in soil the constant of chlorophyll degradation rate in lupin plants increased from k = 870 M -1 day -1 for 3 mg ciprofloxacin to k = 2490 M -1 day -1 for 90 mg ciprofloxacin, and in the case of tetracycline the reaction rate constant increased from k = 1330 M -1 day -1 to k = 2910 M -1 day -1 . The sensitivity of chlorophyll to ciprofloxacin and tetracycline was confirmed by determining EC and TU indices. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Effect of Drought Stress on Leaf Water Status, Electrolyte Leakage, Photosynthesis Parameters and Chlorophyll Fluorescence of Two Kochia Ecotypes (Kochia scoparia Irrigated With Saline Water

    Directory of Open Access Journals (Sweden)

    A Masoumi

    2012-12-01

    Full Text Available Rainfall deficiency and the development of salinity in Iran are the most important factors for using new salt and drought-resistant plants instead of conventional crops. Kochia species have recently attracted the attention of researchers as a forage and fodder crop in marginal lands worldwide due to its drought and salt tolerant characteristics. This field experiment was performed at the Salinity Research Station of Ferdowsi University of Mashhad, Iran, in a split plot based on randomized complete block design with three replications in 2008. Drought stress, including four levels (control, no irrigation in vegetative stage, no irrigation at reproductive stage and no irrigation at maturity stage for four weeks, and two Kochia ecotypes (Birjand and Borujerd were allocated as main and sub plots, respectively. Relative water content, electrolyte leakage, photosynthesis parameters and chlorophyll fluorescence were assayed every two week from late vegetative stage. Results showed that drought stress decreased significantly measured parameters in plants under stress, in all stages. Plants completely recovered after eliminating stress and rewatering and recovered plants did not show significant difference with control. Electrolyte leaking and chlorophyll fluorescence showed the lowest change among the measured parameters. It can emphasize that resistant to stress conditions in this plant and cell wall is not damaged at this level of stress situation. Birjand ecotype from the arid region, revealed a better response than Borujerd ecotype to drought stress. Probably it returns to initial adaptation of Birjand. In general this plant can recover after severe drought stress well. It is possible to introduce this plant as a new fodder in arid and saline conditions.

  14. Seasonal and spatial variability of surface seawater fluorescence properties in the Baltic and Nordic Seas: results of lidar experiments Oceanologia 2007, no 49(1, pp. 59-69

    Directory of Open Access Journals (Sweden)

    Violetta Drozdowska

    2007-03-01

    Full Text Available The paper analyses experimental measurements of laser-induced fluorescence (LIF spectra in different seawaters. The fluorescence parameters, calculated from LIF spectra as the ratio of the integrals of fluorescence and Raman signal intensities, provide information about the relative changes in the concentrations of fluorescing molecules. Gathered during several cruises in 1994-2004 in the Baltic and Nordic Seas, all the data are presented as scatter plots of the fluorescence parameters of chlorophyll a (Chl a and coloured dissolved organic matter (CDOM. Satisfactory correlations between these two parameters were found a for open Nordic Seas waters, b for the southern Baltic in blooming periods only, and c for the Gulf of Gdańnsk in non-blooming periods only.

  15. Dynamic Response of Plant Chlorophyll Fluorescence to Light, Water and Nutrient Availability

    Science.gov (United States)

    Cendrero Mateo, M. D. P.; Moran, S. M.; Porcar-Castell, A.; Carmo-Silva, A. E.; Papuga, S. A.; Matveeva, M.; Wieneke, S.; Rascher, U.

    2014-12-01

    Photosynthesis is the most important exchange process of CO2 between the atmosphere and the land-surface. Spatial and temporal patterns of photosynthesis depend on dynamic plant-specific adaptation strategies to highly variable environmental conditions e.g. light, water, and nutrient availability. Chlorophyll fluorescence (ChF) has been proposed as a direct indicator of photosynthesis, and several studies have demonstrated its relationship with vegetation functioning at leaf and canopy level. In this study, two overarching questions about ChF were addressed: Q1) How water, nutrient and ambient light conditions determine the relationships between photosynthesis and ChF? Which is the optimum irradiance level for detecting water and nutrient deficit conditions with ChF?; Q2) What is the seasonal relationship between photosynthesis and ChF when nitrogen is the limiting factor? The results of this study indicated that when the differences between treatments (water or nitrogen) drive the relationship between photosynthesis and ChF, ChF has a direct relationship with photosynthesis. This study demonstrates that the light level at which plants were grown was optimum for detecting water and nutrient deficit with ChF. Further, the seasonal relation between photosynthesis and ChF with nitrogen stress was not a simple linear function due to the complex physiological relation between photosynthesis and ChF. Our study showed that at times in the season when nitrogen was sufficient and photosynthesis was highest, ChF decreased because these two processes compete for available energy. The results from this study demonstrated that ChF is a reliable indicator of plant stress and has great potential as a tool for better understand where, when, and how CO2 is exchanged between the land and atmosphere.

  16. Effet de la salinité sur la fluorescence chlorophyllienne, la teneur en proline et la production florale de trois espèces ornementales

    Directory of Open Access Journals (Sweden)

    Mathlouthi, M.

    2005-01-01

    Full Text Available Effect of Chloride Sodium on Chlorophyll Fluorescence, Plant Proline Content and Flowers Production of Three Ornamental Species. Three ornamental species (Zinnia elegans, Tagetes patula and Petunia hybrida were used to test sodium chloride effect on chlorophyll fluorescence, plant proline content and flowers production. Three treatments were used in this trial: 0, 2 and 4 g of Nacl.l-1 of irrigation water. The results showed that chlorophyll fluorescence was not affected by sodium chloride treatment but plant proline content increased and flowers production decreased as NaCl doses increase.

  17. Acclimation of shade-tolerant and light-resistant Tradescantia species to growth light: chlorophyll a fluorescence, electron transport, and xanthophyll content.

    Science.gov (United States)

    Mishanin, Vladimir I; Trubitsin, Boris V; Patsaeva, Svetlana V; Ptushenko, Vasily V; Solovchenko, Alexei E; Tikhonov, Alexander N

    2017-09-01

    In this study, we have compared the photosynthetic characteristics of two contrasting species of Tradescantia plants, T. fluminensis (shade-tolerant species), and T. sillamontana (light-resistant species), grown under the low light (LL, 50-125 µmol photons m -2  s -1 ) or high light (HL, 875-1000 µmol photons m -2  s -1 ) conditions during their entire growth period. For monitoring the functional state of photosynthetic apparatus (PSA), we measured chlorophyll (Chl) a emission fluorescence spectra and kinetics of light-induced changes in the heights of fluorescence peaks at 685 and 740 nm (F 685 and F 740 ). We also compared the light-induced oxidation of P 700 and assayed the composition of carotenoids in Tradescantia leaves grown under the LL and HL conditions. The analyses of slow induction of Chl a fluorescence (SIF) uncovered different traits in the LL- and HL-grown plants of ecologically contrasting Tradescantia species, which may have potential ecophysiological significance with respect to their tolerance to HL stress. The fluorometry and EPR studies of induction events in chloroplasts in situ demonstrated that acclimation of both Tradescantia species to HL conditions promoted faster responses of their PSA as compared to LL-grown plants. Acclimation of both species to HL also caused marked changes in the leaf anatomy and carotenoid composition (an increase in Violaxanthin + Antheraxantin + Zeaxanthin and Lutein pools), suggesting enhanced photoprotective capacity of the carotenoids in the plants grown in nature under high irradiance. Collectively, the results of the present work suggest that the mechanisms of long-term PSA photoprotection in Tradescantia are based predominantly on the light-induced remodeling of pigment-protein complexes in chloroplasts.

  18. Measurements of excited-state-to-excited-state transition probabilities and photoionization cross-sections using laser-induced fluorescence and photoionization signals

    International Nuclear Information System (INIS)

    Shah, M.L.; Sahoo, A.C.; Pulhani, A.K.; Gupta, G.P.; Dikshit, B.; Bhatia, M.S.; Suri, B.M.

    2014-01-01

    Laser-induced photoionization and fluorescence signals were simultaneously observed in atomic samarium using Nd:YAG-pumped dye lasers. Two-color, three-photon photoionization and two-color fluorescence signals were recorded simultaneously as a function of the second-step laser power for two photoionization pathways. The density matrix formalism has been employed to analyze these signals. Two-color laser-induced fluorescence signal depends on the laser powers used for the first and second-step transitions as well as the first and second-step transition probability whereas two-color, three-photon photoionization signal depends on the third-step transition cross-section at the second-step laser wavelength along with the laser powers and transition probability for the first and second-step transitions. Two-color laser-induced fluorescence was used to measure the second-step transition probability. The second-step transition probability obtained was used to infer the photoionization cross-section. Thus, the methodology combining two-color, three-photon photoionization and two-color fluorescence signals in a single experiment has been established for the first time to measure the second-step transition probability as well as the photoionization cross-section. - Highlights: • Laser-induced photoionization and fluorescence signals have been simultaneously observed. • The density matrix formalism has been employed to analyze these signals. • Two-color laser-induced fluorescence was used to measure the second-step transition probability. • The second-step transition probability obtained was used to infer the photoionization cross-section. • Transition probability and photoionization cross-section have been measured in a single experiment

  19. Evaluation of furocoumarins as photosynthetic inhibitor by chlorophyll a fluorescence assay

    OpenAIRE

    Sampaio, Olívia Moreira; Silva, Maria Fátima das Graças Fernandes da; Veiga, Thiago Andre Moura [UNIFESP; King-Díaz, Beatriz; Lotina-Hennsen, Blas

    2012-01-01

    The evaluations of Chorophyll a fluorescence emitted by superior plants carry structural information and photosynthetic apparatus function. Quantitative analysis apparatus of fluorescence kinetic were measured by energy flows (ABS), (TR), (ET) and (DI), known as phenomenological phenomena of OJIP test. Four furocoumarins were isolated from Ruta graveolens (Rutaceae), and chorophyll a (Chl a) fluorescence assays were performed with these compounds to evaluate the photosynthesis inhibition pote...

  20. CHANGES IN CHLOROPHYLL A FLOURESCENCE AND PIGMENT RATIOS DURING DIFFERENT GROWTH PHASES OF A UNICELLULAR MARINE CHAETOCEROS (BACILLAROPHYCEAE) IN BATCH CULTURE

    Science.gov (United States)

    Interpretations of chlorophyll a fluorescence data are based largely on application with green algae and higher plants. This study evaluated the interpretation of fluorescence data for a unicellular marine diatom. Chaetoceros sp. was grown in 4-liter batch cultures on a 16:8, L:D...

  1. The effects of particles and dissolved materials on in situ algal pigment fluorescence sensors

    Science.gov (United States)

    Saraceno, J.; Bergamaschi, B. A.; Downing, B. D.

    2013-12-01

    Field deployable sensors that measure algal pigment fluorescence (APF), such as chlorophyll-a (excitation/emission ca. 470/685 nm), and phycocyanin (ca. 590/685 nm), have been used to estimate algal biomass and study food-web dynamics in coastal and oceanic waters for many years. There is also widespread use of these sensors in real time river-observing networks. However, freshwater systems often possess elevated levels of suspended solids and dissolved organic material that can interfere with optical measurements. Data collected under conditions that result in interferences may not be comparable across time and between sites unless the data are appropriately corrected. Using standard reference materials and a surrogate for algal fluorescence (Rhodamine WT), lab experiments were conducted on several commercially available sensors to quantify sensitivity to interferences over a range of naturally occurring surface water conditions (DOC : 0-30 mg/L and turbidity: 0- 1000 FNU ). Chlorophyll-a sensors exhibited a slight but significant positive bias (2 mg/L, with signal quenching reaching a maximum of 15% at 30 mg/L DOC. All phycocyanin sensors displayed a positive non-linear bias with DOC concentration, reaching a maximum of 40% difference at 30 mg/L DOC. Both chlorophyll-a and phycocyanin sensors showed a positive linear relationship with suspended solids concentration (as indicated by turbidity).The effect of suspended solids on APF output can be explained by the detection of scattered excitation light (leaking through emission filters). Similar qualitative effects were observed for the sensors tested, though the magnitude of the effect varied among sensor type. This indicates that differences in sensor designs such as geometry, wavelength and signal post processing techniques is related to its sensitivity to interferences. Although sensors exhibited significant cross sensitivity to interferences, our results indicate that simple corrections can largely remove

  2. A Monte Carlo Ray Tracing Model to Improve Simulations of Solar-Induced Chlorophyll Fluorescence Radiative Transfer

    Science.gov (United States)

    Halubok, M.; Gu, L.; Yang, Z. L.

    2017-12-01

    A model of light transport in a three-dimensional vegetation canopy is being designed and evaluated. The model employs Monte Carlo ray tracing technique which offers simple yet rigorous approach of quantifying the photon transport in a plant canopy. This method involves simulation of a chain of scattering and absorption events incurred by a photon on its path from the light source. Implementation of weighting mechanism helps avoid `all-or-nothing' type of interaction between a photon packet and a canopy element, i.e. at each interaction a photon packet is split into three parts, namely, reflected, transmitted and absorbed, instead of assuming complete absorption, reflection or transmission. Canopy scenes in the model are represented by a number of polygons with specified set of reflectances and transmittances. The performance of the model is being evaluated through comparison against established plant canopy reflectance models, such as 3D Radiosity-Graphics combined model which calculates bidirectional reflectance distribution function of a 3D canopy scene. This photon transport model is to be coupled to a leaf level solar-induced chlorophyll fluorescence (SIF) model with the aim of further advancing of accuracy of the modeled SIF, which, in its turn, has a potential of improving our predictive capability of terrestrial carbon uptake.

  3. Comparison of Measurements and FluorMOD Simulations for Solar Induced Chlorophyll Fluorescence and Reflectance of a Corn Crop under Nitrogen Treatments [SIF and Reflectance for Corn

    Science.gov (United States)

    Middleton, Elizabeth M.; Corp, Lawrence A.; Campbell, Petya K. E.

    2007-01-01

    The FLuorescence Explorer (FLEX) satellite concept is one of six semifinalist mission proposals selected in 2006 for pre-Phase studies by the European Space Agency (ESA). The FLEX concept proposes to measure passive solar induced chlorophyll fluorescence (SIF) of terrestrial ecosystems. A new spectral vegetation Fluorescence Model (FluorMOD) was developed to include the effects of steady state SIF on canopy reflectance. We used our laboratory and field measurements previously acquired from foliage and canopies of corn (Zea mays L.) under controlled nitrogen (N) fertilization to parameterize and evaluate FluorMOD. Our data included biophysical properties, fluorescence (F) and reflectance spectra for leaves; reflectance spectra of canopies and soil; solar irradiance; plot-level leaf area index; and canopy SIF emissions determined using the Fraunhofer Line Depth principal for the atmospheric telluric oxygen absorption features at 688 nm (O2-beta) and 760 nm (O2-alpha). FluorMOD simulations implemented in the default "look-up-table" mode did not reproduce the observed magnitudes of leaf F, canopy SIF, or canopy reflectance. However, simulations for all of these parameters agreed with observations when the default FluorMOD information was replaced with measurements, although N treatment responses were underestimated. Recommendations were provided to enhance FluorMOD's potential utility in support of SIF field experiments and studies of agriculture and ecosystems.

  4. Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.

    Science.gov (United States)

    Ghandchi, Frederick P; Caetano-Anolles, Gustavo; Clough, Steven J; Ort, Donald R

    2016-01-01

    Chlorophyll degradation is an intricate process that is critical in a variety of plant tissues at different times during the plant life cycle. Many of the photoactive chlorophyll degradation intermediates are exceptionally cytotoxic necessitating that the pathway be carefully coordinated and regulated. The primary regulatory step in the chlorophyll degradation pathway involves the enzyme pheophorbide a oxygenase (PAO), which oxidizes the chlorophyll intermediate pheophorbide a, that is eventually converted to non-fluorescent chlorophyll catabolites. There is evidence that PAO is differentially regulated across different environmental and developmental conditions with both transcriptional and post-transcriptional components, but the involved regulatory elements are uncertain or unknown. We hypothesized that transcription factors modulate PAO expression across different environmental conditions, such as cold and drought, as well as during developmental transitions to leaf senescence and maturation of green seeds. To test these hypotheses, several sets of Arabidopsis genomic and bioinformatic experiments were investigated and re-analyzed using computational approaches. PAO expression was compared across varied environmental conditions in the three separate datasets using regression modeling and correlation mining to identify gene elements co-expressed with PAO. Their functions were investigated as candidate upstream transcription factors or other regulatory elements that may regulate PAO expression. PAO transcript expression was found to be significantly up-regulated in warm conditions, during leaf senescence, and in drought conditions, and in all three conditions significantly positively correlated with expression of transcription factor Arabidopsis thaliana activating factor 1 (ATAF1), suggesting that ATAF1 is triggered in the plant response to these processes or abiotic stresses and in result up-regulates PAO expression. The proposed regulatory network includes the

  5. Mapping cropland GPP in the north temperate region with space measurements of chlorophyll fluorescence

    Science.gov (United States)

    Guanter, L.; Zhang, Y.; Jung, M.; Joiner, J.; Voigt, M.; Huete, A. R.; Zarco-Tejada, P.; Frankenberg, C.; Lee, J.; Berry, J. A.; Moran, S. M.; Ponce-Campos, G.; Beer, C.; Camps-Valls, G.; Buchmann, N. C.; Gianelle, D.; Klumpp, K.; Cescatti, A.; Baker, J. M.; Griffis, T.

    2013-12-01

    Monitoring agricultural productivity is important for optimizing management practices in a world under a continuous increase of food and biofuel demand. We used new space measurements of sun-induced chlorophyll fluorescence (SIF), a vegetation parameter intrinsically linked to photosynthesis, to capture photosynthetic uptake of the crop belts in the north temperate region. The following data streams and procedures have been used in this analysis: (1) SIF retrievals have been derived from measurements of the MetOp-A / GOME-2 instrument in the 2007-2011 time period; (2) ensembles of process-based and data-driven biogeochemistry models have been analyzed in order to assess the capability of global models to represent crop gross primary production (GPP); (3) flux tower-based GPP estimates covering the 2007-2011 time period have been extracted over 18 cropland and grassland sites in the Midwest US and Western Europe from the Ameriflux and the European Fluxes Database networks; (4) large-scale NPP estimates have been derived by the agricultural inventory data sets developed by USDA-NASS and Monfreda et al. The strong linear correlation between the SIF space retrievals and the flux tower-based GPP, found to be significantly higher than that between reflectance-based vegetation indices (EVI, NDVI and MTCI) and GPP, has enabled the direct upscaling of SIF to cropland GPP maps at the synoptic scale. The new crop GPP estimates we derive from the scaling of SIF space retrievals are consistent with both flux tower GPP estimates and agricultural inventory data. These new GPP estimates show that crop productivity in the US Western Corn Belt, and most likely also in the rice production areas in the Indo-Gangetic plain and China, is up to 50-75% higher than estimates by state-of-the-art data-driven and process-oriented biogeochemistry models. From our analysis we conclude that current carbon models have difficulties in reproducing the special conditions of those highly productive

  6. New Methods for Retrieval of Chlorophyll Red Fluorescence from Hyperspectral Satellite Instruments: Simulations and Application to GOME-2 and SCIAMACHY

    Science.gov (United States)

    Joiner, Joanna; Yoshida, Yasuko; Guanter, Luis; Middleton, Elizabeth M.

    2016-01-01

    Global satellite measurements of solar-induced fluorescence (SIF) from chlorophyll over land and ocean have proven useful for a number of different applications related to physiology, phenology, and productivity of plants and phytoplankton. Terrestrial chlorophyll fluorescence is emitted throughout the red and far-red spectrum, producing two broad peaks near 683 and 736nm. From ocean surfaces, phytoplankton fluorescence emissions are entirely from the red region (683nm peak). Studies using satellite-derived SIF over land have focused almost exclusively on measurements in the far red (wavelengths greater than 712nm), since those are the most easily obtained with existing instrumentation. Here, we examine new ways to use existing hyperspectral satellite data sets to retrieve red SIF (wavelengths less than 712nm) over both land and ocean. Red SIF is thought to provide complementary information to that from the far red for terrestrial vegetation. The satellite instruments that we use were designed to make atmospheric trace-gas measurements and are therefore not optimal for observing SIF; they have coarse spatial resolution and only moderate spectral resolution (0.5nm). Nevertheless, these instruments, the Global Ozone Monitoring Instrument 2 (GOME-2) and the SCanning Imaging Absorption spectroMeter for Atmospheric CHartographY (SCIAMACHY), offer a unique opportunity to compare red and far-red terrestrial SIF at regional spatial scales. Terrestrial SIF has been estimated with ground-, aircraft-, or satellite-based instruments by measuring the filling-in of atmospheric andor solar absorption spectral features by SIF. Our approach makes use of the oxygen (O2) gamma band that is not affected by SIF. The SIF-free O2 gamma band helps to estimate absorption within the spectrally variable O2 B band, which is filled in by red SIF. SIF also fills in the spectrally stable solar Fraunhofer lines (SFLs) at wavelengths both inside and just outside the O2 B band, which further helps

  7. Fluorescência da clorofila a em folhas de tangerineira 'Ponkan' e limeira ácida 'Tahiti' submetidas ao estresse hídrico Chlorophyll a fluorescence in leaves of 'Ponkan' mandarin and the 'Tahiti' acid lime submitted to water stress

    Directory of Open Access Journals (Sweden)

    Maria do Céu Monteiro da Cruz

    2009-09-01

    Full Text Available O trabalho foi realizado com o objetivo de avaliar o estresse causado por deficiência hídrica para induzir o florescimento sobre a fluorescência da clorofila a em tangerineira 'Ponkan' e limeira ácida 'Tahiti'. As plantas foram enxertadas sobre o limoeiro 'Cravo', conduzidas em câmara de crescimento sob condições controladas. O estresse causado pela deficiência hídrica submetido à tangerineira 'Ponkan' e à limeira ácida 'Tahiti' reduziu a eficiência quântica potencial do fotossistema II (Fv/Fm. Após a irrigação, as plantas apresentaram valores dos parâmetros de fluorescência similares àqueles verificados antes do estresse submetido por deficiência hídrica.The research was carried out with the aim to evaluate the stress caused by water deficiency on a chlorophyll a fluorescence in 'Ponkan' mandarin and 'Tahiti' acid lime plants. The plants were grafted on Rangpur lime submitted to water stress in growth chamber under controlled conditions for induce the flowering. the stress caused by water deficiency submitted in plants of mandarin 'Ponkan' and 'Tahiti' lime decreased the potential quantum efficiency of photosystem II (Fv/Fm. After the irrigation the plants showed fluorescence parameters values similar to those prior to stress submitted by water deficiency.

  8. Herbicide impact on Hormosira banksii gametes measured by fluorescence and germination bioassays

    International Nuclear Information System (INIS)

    Seery, Cliff R.; Gunthorpe, Leanne; Ralph, Peter J.

    2006-01-01

    The innovative bioassay described here involves chlorophyll a fluorescence measurements of gametes from the macroalgae, Hormosira banksii, where gametes (eggs) were exposed to Diuron, Irgarol and Bromacil. Response was assessed as percent inhibition from control of effective quantum yield (ΔF/Fm') of photosystem II, herein referred to as % PSII Inhibition. This was measured with the dual-channelled pulse amplitude modulated (PAM) fluorometer, ToxY-PAM. The fluorescence bioassay was run simultaneously with an established H. banksii germination bioassay to compare sensitivity, precision, and time-to-result. The fluorescence bioassay gave highly sensitive results evidenced by EC 5 s (% PSII Inhibition) for Diuron, Irgarol and Bromacil being three, four and three orders of magnitude (respectively) lower than EC 5 s generated from the germination bioassays. Precision of the fluorescence bioassay was demonstrated with low coefficient of variations (<30%) for all three toxicants. With regard to time, the fluorescence bioassay gave results within 6 h, as opposed to more than 50 h for the germination bioassay. - Chlorophyll a fluorescence measurements form the basis of a macroalgal bioassay with many advantages over germination-based methods

  9. Identification of a Chlorophyll Dephytylase Involved in Chlorophyll Turnover in Arabidopsis.

    Science.gov (United States)

    Lin, Yao-Pin; Wu, Meng-Chen; Charng, Yee-Yung

    2016-12-01

    Chlorophyll turns over in green organs during photosystem repair and is salvaged via de- and rephytylation, but the enzyme involved in dephytylation is unknown. We have identified an Arabidopsis thaliana thylakoid protein with a putative hydrolase domain that can dephytylate chlorophyll in vitro and in vivo. The corresponding locus, CHLOROPHYLL DEPHYTYLASE1 (CLD1), was identified by mapping a semidominant, heat-sensitive, missense allele (cld1-1). CLD1 is conserved in oxygenic photosynthetic organisms, sharing structural similarity with pheophytinase, which functions in chlorophyll breakdown during leaf senescence. Unlike pheophytinase, CLD1 is predominantly expressed in green organs and can dephytylate chlorophyll in vitro. The specific activity is significantly higher for the mutant protein encoded by cld1-1 than the wild-type enzyme, consistent with the semidominant nature of the cld1-1 mutation. Supraoptimal CLD1 activities in cld1-1 mutants and transgenic seedlings led to the proportional accumulation of chlorophyllides derived from chlorophyll dephytylation after heat shock, which resulted in light-dependent cotyledon bleaching. Reducing CLD1 expression diminished thermotolerance and the photochemical efficiency of photosystem II under prolonged moderate heat stress. Taken together, our results suggest that CLD1 is the long-sought enzyme for removing the phytol chain from chlorophyll during its turnover at steady state within the chloroplast. © 2016 American Society of Plant Biologists. All rights reserved.

  10. Differential effects of glyphosate and aminomethylphosphonic acid (AMPA) on photosynthesis and chlorophyll metabolism in willow plants.

    Science.gov (United States)

    Gomes, Marcelo Pedrosa; Le Manac'h, Sarah Gingras; Maccario, Sophie; Labrecque, Michel; Lucotte, Marc; Juneau, Philippe

    2016-06-01

    We used a willow species (Salix miyabeana cultivar SX64) to examine the differential secondary-effects of glyphosate and aminomethylphosphonic acid (AMPA), the principal glyphosate by-product, on chlorophyll metabolism and photosynthesis. Willow plants were treated with different concentrations of glyphosate (equivalent to 0, 1.4, 2.1 and 2.8kgha(-1)) and AMPA (equivalent to 0, 0.28, 1.4 and 2.8kgha(-1)) and evaluations of pigment contents, chlorophyll fluorescence, and oxidative stress markers (hydrogen peroxide content and antioxidant enzyme activities) in leaves were performed after 12h of exposure. We observed that AMPA and glyphosate trigger different mechanisms leading to decreases in chlorophyll content and photosynthesis rates in willow plants. Both chemicals induced ROS accumulation in willow leaves although only glyphosate-induced oxidative damage through lipid peroxidation. By disturbing chlorophyll biosynthesis, AMPA induced decreases in chlorophyll contents, with consequent effects on photosynthesis. With glyphosate, ROS increases were higher than the ROS-sensitive threshold, provoking chlorophyll degradation (as seen by pheophytin accumulation) and invariable decreases in photosynthesis. Peroxide accumulation in both AMPA and glyphosate-treated plants was due to the inhibition of antioxidant enzyme activities. The different effects of glyphosate on chlorophyll contents and photosynthesis as described in the literature may be due to various glyphosate:AMPA ratios in those plants. Copyright © 2015 Elsevier Inc. All rights reserved.

  11. On the origins of 718 nm fluorescence from Porphyridium cruentum at 77 K.

    Science.gov (United States)

    Wang, R T; Graham, J R; Myers, J

    1980-09-05

    Emission spectra and transient behavior of fluorescence in Porphyridium cruentum have been studied in search of the pathway of excitation energy from the phycobilisome to Photosystem I (PS I) of photosynthesis. For activating light at 436 nm, absorbed almost entirely by chlorophyll, fluorescence is dominated by the 718 nm band generally attributed to chlorophyll of PS I. Activating light at 550 nm, absorbed mostly by the phycobilisome, gives rise to the distinctive fluorescence band of PS II chlorophyll at 696 nm but also gives a large component at 718 nm. Analysis depends critically upon the source of emission at 718 nm under 550 nm activation: does it arise from PS I or PS IIC0 Ley and Butler (Ley, A.C. and Butler, W.L. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 3956-3960) have proposed that the 718 nm arises mostly from PS I, to which it is transferred by spillover from PS II. We suggest a different proposition: that under 550 nm activation most of the 718 emission arises from PS II. Analysis shows that this proposition provides an alternative explanation. Using the small change in fluorescence yield observed under 436 nm activation as a monitor of excitation in PS I, we provide evidence that under 550 activation most of the 718 nm fluorescence arises from PS II.

  12. Rapid assessment of different oxygenic phototrophs and single-cell photosynthesis with multicolour variable chlorophyll fluorescence imaging

    DEFF Research Database (Denmark)

    Trampe, Erik Christian Løvbjerg; Kolbowski, J.; Schreiber, U.

    2011-01-01

    , red or white light. Automated sequential exposure of microscopic samples to the three excitation colours enables subsequent deconvolution of the resulting fluorescence signals and colour marking of cells with different photopigmentation, i.e., cyanobacteria, green algae, red algae and diatoms....... The photosynthetic activity in complex mixtures of phototrophs and natural samples can thus be assigned to different types of phototrophs, which can be quantified simultaneously. Here, we describe the composition and performance of the new imaging system and present applications with both natural phytoplankton...

  13. Satellite-detected fluorescence reveals global physiology of ocean phytoplankton

    Directory of Open Access Journals (Sweden)

    M. J. Behrenfeld

    2009-05-01

    Full Text Available Phytoplankton photosynthesis links global ocean biology and climate-driven fluctuations in the physical environment. These interactions are largely expressed through changes in phytoplankton physiology, but physiological status has proven extremely challenging to characterize globally. Phytoplankton fluorescence does provide a rich source of physiological information long exploited in laboratory and field studies, and is now observed from space. Here we evaluate the physiological underpinnings of global variations in satellite-based phytoplankton chlorophyll fluorescence. The three dominant factors influencing fluorescence distributions are chlorophyll concentration, pigment packaging effects on light absorption, and light-dependent energy-quenching processes. After accounting for these three factors, resultant global distributions of quenching-corrected fluorescence quantum yields reveal a striking consistency with anticipated patterns of iron availability. High fluorescence quantum yields are typically found in low iron waters, while low quantum yields dominate regions where other environmental factors are most limiting to phytoplankton growth. Specific properties of photosynthetic membranes are discussed that provide a mechanistic view linking iron stress to satellite-detected fluorescence. Our results present satellite-based fluorescence as a valuable tool for evaluating nutrient stress predictions in ocean ecosystem models and give the first synoptic observational evidence that iron plays an important role in seasonal phytoplankton dynamics of the Indian Ocean. Satellite fluorescence may also provide a path for monitoring climate-phytoplankton physiology interactions and improving descriptions of phytoplankton light use efficiencies in ocean productivity models.

  14. Thylakoid redox signals are integrated into organellar-gene-expression-dependent retrograde signalling in the prors1-1 mutant

    Directory of Open Access Journals (Sweden)

    Luca eTadini

    2012-12-01

    Full Text Available Perturbations in organellar gene expression (OGE and the thylakoid redox state (TRS activate retrograde signalling pathways that adaptively modify nuclear gene expression (NGE, according to developmental and metabolic needs. The prors1-1 mutation in Arabidopsis down-regulates the expression of the nuclear gene Prolyl-tRNA Synthetase1 (PRORS1 which acts in both plastids and mitochondria, thereby impairing protein synthesis in both organelles and triggering OGE-dependent retrograde signalling. Because the mutation also affects thylakoid electron transport, TRS-dependent signals may likewise have an impact on the changes in NGE observed in this genotype. In this study, we have investigated whether signals related to TRS are actually integrated into the OGE-dependent retrograde signalling pathway. To this end, the chaos mutation (for chlorophyll a/b binding protein harvesting-organelle specific, which shows a partial loss of PSII antennae proteins and thus a reduction in PSII light absorption capability, was introduced into the prors1-1 mutant background. The resulting double mutant displayed a prors1-1-like reduction in plastid translation rate and a chaos-like decrease in PSII antenna size, whereas the hyper-reduction of the thylakoid electron transport chain, caused by the prors1-1 mutation, was alleviated, as determined by monitoring chlorophyll (Chl fluorescence and thylakoid phosphorylation. Interestingly, a substantial fraction of the nucleus-encoded photosynthesis genes down-regulated in the prors1-1 mutant are expressed at nearly wild-type rates in prors1-1 chaos leaves, and this recovery is reflected in the steady-state levels of their protein products in the chloroplast. We therefore conclude that signals related to photosynthetic electron transport and TRS, and indirectly to carbohydrate metabolism and energy balance, are indeed fed into the OGE-dependent retrograde pathway to modulate NGE and adjust the abundance of chloroplast proteins.

  15. Effect of molecular surrounding to spectral characteristics of chlorophylls - the perspective photodynamic therapy photosensitizers

    International Nuclear Information System (INIS)

    Zakhidov, E. A.; Kokhkharov, A. M.; Nematov, Sh. Q.

    2011-01-01

    In the paper the absorption and fluorescence spectra of biomolecules of natural origin a chlorophyll and bacteriochlorophyll have been analysed. The possibility of gigantic (up to several thousand sm -1 ) frequency shifts of the maxima of absorption and fluorescence bands of these molecules depending on physical characteristics their molecular surrounding is shown. Expressions describing dependence of the frequency shift from electron polarizability and ionization potentials of the molecules are discussed. The molecules studied are considered as effective photosensitizers for photodynamic therapy in long wavelength range of the spectra. (authors)

  16. Relationship between chlorophyll density and SPAD chlorophyll meter reading for Jerusalem artichoke (Helianthus tuberosus L.)

    Science.gov (United States)

    Chlorophyll is an indicator of crop health and productivity. Measuring chlorophyll is usually done directly and requires significant time and resources. Indirect measurement of chlorophyll density using a handheld portable chlorophyll meter can reduce time. However, this information is very limit...

  17. Fluorescence, Aqua MODIS, NPP, 0.125 degrees, West US

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS measures chlorophyll fluorescence, which gives insight into the physiology of phytoplankton in the ocean. When phytoplankton are under stress, the rate at...

  18. Fluorescence, Aqua MODIS, NPP, 0.125 degrees, East US

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS measures chlorophyll fluorescence, which gives insight into the physiology of phytoplankton in the ocean. When phytoplankton are under stress, the rate at...

  19. Toxic effects of amoxicillin on the photosystem II of Synechocystis sp. characterized by a variety of in vivo chlorophyll fluorescence tests

    International Nuclear Information System (INIS)

    Pan Xiangliang; Deng Chunnuan; Zhang Daoyong; Wang Jianlong; Mu Guijin; Chen Ying

    2008-01-01

    Amoxicillin is one of the widely used antibiotics of environmental concern. This study shows that amoxicillin has toxic effects on the photosynthesis of Synechocystis sp. Its inhibitory effects on photosystem II (PSII) of Synechocystis sp. were investigated by using a variety of in vivo chlorophyll fluorescence tests. The inhibitory effects of amoxicillin on PSII activity of Synechocystis sp. are concentration-dependent. Amoxicillin exposure leads to slowing down of electron transport on both donor side and acceptor side and causes accumulation of P680 + . Q A - reoxidation test revealed that amoxicillin hinders electron transfer from Q A - to Q B /Q B - and more Q A - is oxidized through S 2 (Q A Q B ) - charge recombination. Analysis of PSII heterogeneity demonstrated that an exposure to amoxicillin increases the proportion of inactive PSII (PSII X ) centers and the proportion of PSII centers with small antenna (PSIIβ). These changes finally result in deterioration of full photosynthesis performance

  20. Determination of phytoplankton abundances (Chlorophyll-a) in the optically complex inland water - The Baltic Sea.

    Science.gov (United States)

    Zhang, Daoxi; Lavender, Samantha; Muller, Jan-Peter; Walton, David; Karlson, Bengt; Kronsell, Johan

    2017-12-01

    A novel approach, termed Summed Positive Peaks (SPP), is proposed for determining phytoplankton abundances (Chlorophyll-a or Chl-a) and surface phytoplankton bloom extent in the optically complex Baltic Sea. The SPP approach is established on the basis of a baseline subtraction method using Rayleigh corrected top-of-atmosphere data from the Medium Resolution Imaging Spectrometer (MERIS) measurements. It calculates the reflectance differences between phytoplankton related signals observed in the MERIS red and near infrared (NIR) bands, such as sun-induced chlorophyll fluorescence (SICF) and the backscattering at 709nm, and considers the summation of the positive line heights for estimating Chl-a concentrations. The SPP algorithm is calibrated against near coincident in situ data collected from three types of phytoplankton dominant waters encountered in the Baltic Sea during 2010 (N=379). The validation results show that the algorithm is capable of retrieving Chl-a concentrations ranging from 0.5 to 3mgm -3 , with an RMSE of 0.24mgm -3 (R 2 =0.69, N=264). Additionally, the comparison results with several Chl-a algorithms demonstrates the robustness of the SPP approach and its sensitivity to low to medium biomass waters. Based on the red and NIR reflectance features, a flagging method is also proposed to distinguish intensive surface phytoplankton blooms from the background water. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. Enhancement of single-molecule fluorescence signals by colloidal silver nanoparticles in studies of protein translation.

    Science.gov (United States)

    Bharill, Shashank; Chen, Chunlai; Stevens, Benjamin; Kaur, Jaskiran; Smilansky, Zeev; Mandecki, Wlodek; Gryczynski, Ignacy; Gryczynski, Zygmunt; Cooperman, Barry S; Goldman, Yale E

    2011-01-25

    Metal-enhanced fluorescence (MEF) increased total photon emission of Cy3- and Cy5-labeled ribosomal initiation complexes near 50 nm silver particles 4- and 5.5-fold, respectively. Fluorescence intensity fluctuations above shot noise, at 0.1-5 Hz, were greater on silver particles. Overall signal-to-noise ratio was similar or slightly improved near the particles. Proximity to silver particles did not compromise ribosome function, as measured by codon-dependent binding of fluorescent tRNA, dynamics of fluorescence resonance energy transfer between adjacent tRNAs in the ribosome, and tRNA translocation induced by elongation factor G.

  2. Enhancement of Single Molecule Fluorescence Signals by Colloidal Silver Nanoparticles in Studies of Protein Translation

    Science.gov (United States)

    Bharill, Shashank; Chen, Chunlai; Stevens, Benjamin; Kaur, Jaskiran; Smilansky, Zeev; Mandecki, Wlodek; Gryczynski, Ignacy; Gryczynski, Zygmunt; Cooperman, Barry S.; Goldman, Yale E.

    2011-01-01

    Metal enhanced fluorescence (MEF) increased total photon emission of Cy3- and Cy5-labeled ribosomal initiation complexes near 50 nm silver particles 4- and 5.5-fold respectively. Fluorescence intensity fluctuations above shot noise, at 0.1 – 5 Hz, were greater on silver particles. Overall signal to noise ratio was similar or slightly improved near the particles. Proximity to silver particles did not compromise ribosome function, as measured by codon-dependent binding of fluorescent tRNA, dynamics of fluorescence resonance energy transfer between adjacent tRNAs in the ribosome, and tRNA translocation induced by elongation factor G. PMID:21158483

  3. Amplification of the Signal Intensity of Fluorescence-Based Fiber-Optic Biosensors Using a Fabry-Perot Resonator Structure

    Directory of Open Access Journals (Sweden)

    Meng-Chang Hsieh

    2015-02-01

    Full Text Available Fluorescent biosensors have been widely used in biomedical applications. To amplify the intensity of fluorescence signals, this study developed a novel structure for an evanescent wave fiber-optic biosensor by using a Fabry-Perot resonator structure. An excitation light was coupled into the optical fiber through a laser-drilled hole on the proximal end of the resonator. After entering the resonator, the excitation light was reflected back and forth inside the resonator, thereby amplifying the intensity of the light in the fiber. Subsequently, the light was used to excite the fluorescent molecules in the reactive region of the sensor. The experimental results showed that the biosensor signal was amplified eight-fold when the resonator reflector was formed using a 92% reflective coating. Furthermore, in a simulation, the biosensor signal could be amplified 20-fold by using a 99% reflector.

  4. Chloroplast to chromoplast transition in tomato fruit: spectral confocal microscopy analyses of carotenoids and chlorophylls in isolated plastids and time-lapse recording on intact live tissue.

    Science.gov (United States)

    Egea, Isabel; Bian, Wanping; Barsan, Cristina; Jauneau, Alain; Pech, Jean-Claude; Latché, Alain; Li, Zhengguo; Chervin, Christian

    2011-08-01

    There are several studies suggesting that tomato (Solanum lycopersicum) chromoplasts arise from chloroplasts, but there is still no report showing the fluorescence of both chlorophylls and carotenoids in an intermediate plastid, and no video showing this transition phase. Pigment fluorescence within individual plastids, isolated from tomato fruit using sucrose gradients, was observed at different ripening stages, and an in situ real-time recording of pigment fluorescence was performed on live tomato fruit slices. At the mature green and red stages, homogenous fractions of chloroplasts and chromoplasts were obtained, respectively. At the breaker stage, spectral confocal microscopy showed that intermediate plastids contained both chlorophylls and carotenoids. Furthermore, an in situ real-time recording (a) showed that the chloroplast to chromoplast transition was synchronous for all plastids of a single cell; and (b) confirmed that all chromoplasts derived from pre-existing chloroplasts. These results give details of the early steps of tomato chromoplast biogenesis from chloroplasts, with the formation of intermediate plastids containing both carotenoids and chlorophylls. They provide information at the sub-cellular level on the synchronism of plastid transition and pigment changes.

  5. Theoretical analysis of fluorescence signals in filamentation of femtosecond laser pulses in nitrogen molecular gas

    International Nuclear Information System (INIS)

    Arevalo, E.; Becker, A.

    2005-01-01

    We study numerically and analytically the role of the combined effect of self-focusing, geometrical focusing, and the plasma defocusing in the formation of the fluorescence signal during the filamentation of a Ti:sapphire laser pulse in nitrogen molecular gas. Results of numerical simulations are used to estimate the number of excited ions in the focal volume, which is proportional to the fluorescence signal. We find good agreement between the theoretical results and the experimental data, showing that such data can be used to get further insight into the effective focal volume during filamentation of femtosecond laser pulses in transparent media

  6. Control of quantum interference of an excitonic wave in a chlorophyll chain with a chlorophyll ring

    International Nuclear Information System (INIS)

    Hong, Suc-Kyoung; Nam, Seog-Woo; Yeon, Kyu-Hwang

    2010-01-01

    The quantum interference of an excitonic wave and its coherent control in a nanochain with a nanoring are studied. The nanochain is comprised of six chlorophylls, where four chlorophylls compose the nanoring and two chlorophylls are attached at two opposite sites on the nanoring. The exciton dynamics and the correlation of the excitation between chlorophylls are analyzed for a given configurational arrangement and dipolar orientation of the chlorophylls. The results of this study show that the excitation at specified chlorophylls is suppressed or enhanced by destructive or constructive interference of the excitonic wave in the chlorophyll nanochain.

  7. Identification of a Chlorophyll Dephytylase Involved in Chlorophyll Turnover in Arabidopsis[OPEN

    Science.gov (United States)

    2016-01-01

    Chlorophyll turns over in green organs during photosystem repair and is salvaged via de- and rephytylation, but the enzyme involved in dephytylation is unknown. We have identified an Arabidopsis thaliana thylakoid protein with a putative hydrolase domain that can dephytylate chlorophyll in vitro and in vivo. The corresponding locus, CHLOROPHYLL DEPHYTYLASE1 (CLD1), was identified by mapping a semidominant, heat-sensitive, missense allele (cld1-1). CLD1 is conserved in oxygenic photosynthetic organisms, sharing structural similarity with pheophytinase, which functions in chlorophyll breakdown during leaf senescence. Unlike pheophytinase, CLD1 is predominantly expressed in green organs and can dephytylate chlorophyll in vitro. The specific activity is significantly higher for the mutant protein encoded by cld1-1 than the wild-type enzyme, consistent with the semidominant nature of the cld1-1 mutation. Supraoptimal CLD1 activities in cld1-1 mutants and transgenic seedlings led to the proportional accumulation of chlorophyllides derived from chlorophyll dephytylation after heat shock, which resulted in light-dependent cotyledon bleaching. Reducing CLD1 expression diminished thermotolerance and the photochemical efficiency of photosystem II under prolonged moderate heat stress. Taken together, our results suggest that CLD1 is the long-sought enzyme for removing the phytol chain from chlorophyll during its turnover at steady state within the chloroplast. PMID:27920339

  8. Chlorophyll Catabolites in Senescent Leaves of the Plum Tree (Prunus domestica).

    Science.gov (United States)

    Erhart, Theresia; Mittelberger, Cecilia; Vergeiner, Clemens; Scherzer, Gerhard; Holzner, Barbara; Robatscher, Peter; Oberhuber, Michael; Kräutler, Bernhard

    2016-11-01

    In cold extracts of senescent leaves of the plum tree (Prunus domestica ssp. domestica), six colorless non-fluorescent chlorophyll catabolites (NCCs) were characterized, named Pd-NCCs. In addition, several minor NCC fractions were tentatively classified. The structure of the most polar one of the NCCs, named Pd-NCC-32, featured an unprecedented twofold glycosidation pattern. Three of the NCCs are also functionalized at their 3 2 -position by a glucopyranosyl group. In addition, two of these glycosidated NCCs carry a dihydroxyethyl group at their 18-position. In the polar Pd-NCC-32, the latter group is further glycosidated at the terminal 18 2 -position. Four other major Pd-NCCs and one minor Pd-NCC were identified with five NCCs from higher plants known to belong to the 'epi'-series. In addition, tentative structures were derived for two minor fractions, classified as yellow chlorophyll catabolites, which represented (formal) oxidation products of two of the observed Pd-NCCs. The chlorophyll catabolites in leaves of plum feature the same basic structural pattern as those found in leaves of apple and pear trees. © 2016 The Authors. Chemistry & Biodiversity Published by Wiley-VHCA AG, Zurich, Switzerland.

  9. Larval vision contributes to gregarious settlement in barnacles: adult red fluorescence as a possible visual signal

    KAUST Repository

    Matsumura, K.

    2014-02-26

    Gregarious settlement, an essential behavior for many barnacle species that can only reproduce by mating with a nearby barnacle, has long been thought to rely on larval ability to recognize chemical signals from conspecifics during settlement. However, the cyprid, the settlement stage larva in barnacles, has one pair of compound eyes that appear only at the late nauplius VI and cyprid stages, but the function(s) of these eyes remains unknown. Here we show that cyprids of the intertidal barnacle Balanus (=Amphibalanus) amphitrite can locate adult barnacles even in the absence of chemical cues, and prefer to settle around them probably via larval sense of vision. We also show that the cyprids can discriminate color and preferred to settle on red surfaces. Moreover, we found that shells of adult B. amphitrite emit red auto-fluorescence and the adult extracts with the fluorescence as a visual signal attracted cyprid larvae to settle around it. We propose that the perception of specific visual signals can be involved in behavior of zooplankton including marine invertebrate larvae, and that barnacle auto-fluorescence may be a specific signal involved in gregarious larval settlement.

  10. Detection of vegetation stress from laser-induced fluorescence signatures

    International Nuclear Information System (INIS)

    Subhash, N.

    1995-01-01

    The in vivo laser-induced fluorescence (LIF) signatures of UV irradiated Salvia splendens plants were measured using an Optical Multichannel Analyser (OMA) system with Nitrogen laser excitation. The LIF spectra which consisted of the blue-green and the red chlorophyll bands were analysed with a non-linear interactive procedure using Gaussian spectral functions. The fluorescence intensity ratios of the various bands obtained from curve fitted parameters were found to be more sensitive to changes in the photosynthetic activity of the plant. The variation in the intensity ratio for the chlorophyll bands for nutrient stressed sunflower, cotton and groundnut plants as well as the nutrient and water stressed rice plants are also presented. It is observed that vegetation stress not only changes the fluorescence intensity ratios and the vitality index of the plant but also changes the peak position of the emission bands, in some cases. It is also seen that analysis of the fluorescence spectra in vegetation remote sensing applications would require a deconvolution procedure to evaluate the exact contribution of each band in the total spectra. (author). 23 refs, 8 figs, 5 tabs

  11. Herbicide impact on Hormosira banksii gametes measured by fluorescence and germination bioassays

    Energy Technology Data Exchange (ETDEWEB)

    Seery, Cliff R. [Institute for Water and Environmental Resource Management, Department of Environmental Sciences, University of Technology, Sydney, Westbourne Street, Gore Hill, 2065 NSW (Australia); Gunthorpe, Leanne [Primary Industries Research Victoria (PIRVic), VIC (Australia); Ralph, Peter J. [Institute for Water and Environmental Resource Management, Department of Environmental Sciences, University of Technology, Sydney, Westbourne Street, Gore Hill, 2065 NSW (Australia)]. E-mail: peter.ralph@uts.edu.au

    2006-03-15

    The innovative bioassay described here involves chlorophyll a fluorescence measurements of gametes from the macroalgae, Hormosira banksii, where gametes (eggs) were exposed to Diuron, Irgarol and Bromacil. Response was assessed as percent inhibition from control of effective quantum yield ({delta}F/Fm') of photosystem II, herein referred to as % PSII Inhibition. This was measured with the dual-channelled pulse amplitude modulated (PAM) fluorometer, ToxY-PAM. The fluorescence bioassay was run simultaneously with an established H. banksii germination bioassay to compare sensitivity, precision, and time-to-result. The fluorescence bioassay gave highly sensitive results evidenced by EC{sub 5}s (% PSII Inhibition) for Diuron, Irgarol and Bromacil being three, four and three orders of magnitude (respectively) lower than EC{sub 5}s generated from the germination bioassays. Precision of the fluorescence bioassay was demonstrated with low coefficient of variations (<30%) for all three toxicants. With regard to time, the fluorescence bioassay gave results within 6 h, as opposed to more than 50 h for the germination bioassay. - Chlorophyll a fluorescence measurements form the basis of a macroalgal bioassay with many advantages over germination-based methods.

  12. Comparison of chlorophyll in the Red Sea derived from MODIS-Aqua and in vivo fluorescence

    KAUST Repository

    Brewin, Robert J W; Raitsos, Dionysios E.; Pradhan, Yaswant; Hoteit, Ibrahim

    2013-01-01

    The Red Sea is a unique marine environment but relatively unexplored. The only available long-term biological dataset at large spatial and temporal scales is remotely-sensed chlorophyll observations (an index of phytoplankton biomass) derived using

  13. Monitoring of Fluorescence Characteristics of Satsuma Mandarin (Citrus unshiu Marc. during the Maturation Period

    Directory of Open Access Journals (Sweden)

    Muharfiza

    2017-10-01

    Full Text Available Monitoring the maturation process of Satsuma mandarin (Citrus unshiu Marc. by determining the soluble solids (SS and acid content non-destructively is needed. Fluorescence components potentially offer such means of accessing fruit maturity characteristics in the orchard. The aim of this study was to determine the potential of fluorescence spectroscopy for monitoring the stage of citrus maturity. Four major fluorescent components in peel and/or flesh were found including chlorophyll-a (excitation (Ex 410 nm, emission (Em 675 nm and chlorophyll-b (Ex 460 nm, Em 650 nm,polymethoxyflavones (PMFs (Ex 260 nm and 370 nm, Em 540 nm, coumarin (Ex 330 nm, Em 400 nm, and a tryptophan-like compound (Ex 260 nm, Em 330 nm. Our results indicated a significant (R2 = 0.9554 logarithmic ratio between tryptophan-like compoundsExEm and chlorophyll-aExEm with the SS:acid ratio. Also, the log of the ratio of PMFs from the peel (ExExEm was significantly correlated with the SS:acid ratio (R2 = 0.8207. While the latter correlation was not as strong as the former, it does demonstrate the opportunity to develop a non-destructive field measurement of fluorescent peel compounds as an indirect index of fruit maturity.

  14. Revisiting chlorophyll extraction methods in biological soil crusts - methodology for determination of chlorophyll a and chlorophyll a + b as compared to previous methods

    Science.gov (United States)

    Caesar, Jennifer; Tamm, Alexandra; Ruckteschler, Nina; Lena Leifke, Anna; Weber, Bettina

    2018-03-01

    Chlorophyll concentrations of biological soil crust (biocrust) samples are commonly determined to quantify the relevance of photosynthetically active organisms within these surface soil communities. Whereas chlorophyll extraction methods for freshwater algae and leaf tissues of vascular plants are well established, there is still some uncertainty regarding the optimal extraction method for biocrusts, where organism composition is highly variable and samples comprise major amounts of soil. In this study we analyzed the efficiency of two different chlorophyll extraction solvents, the effect of grinding the soil samples prior to the extraction procedure, and the impact of shaking as an intermediate step during extraction. The analyses were conducted on four different types of biocrusts. Our results show that for all biocrust types chlorophyll contents obtained with ethanol were significantly lower than those obtained using dimethyl sulfoxide (DMSO) as a solvent. Grinding of biocrust samples prior to analysis caused a highly significant decrease in chlorophyll content for green algal lichen- and cyanolichen-dominated biocrusts, and a tendency towards lower values for moss- and algae-dominated biocrusts. Shaking of the samples after each extraction step had a significant positive effect on the chlorophyll content of green algal lichen- and cyanolichen-dominated biocrusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest the addition of an intermediate shaking step for complete chlorophyll extraction (see Supplement S6 for detailed manual). Determination of a universal chlorophyll extraction method for biocrusts is essential for the inter-comparability of publications conducted across all continents.

  15. Fluorescence In Situ Hybridization (FISH Signal Analysis Using Automated Generated Projection Images

    Directory of Open Access Journals (Sweden)

    Xingwei Wang

    2012-01-01

    Full Text Available Fluorescence in situ hybridization (FISH tests provide promising molecular imaging biomarkers to more accurately and reliably detect and diagnose cancers and genetic disorders. Since current manual FISH signal analysis is low-efficient and inconsistent, which limits its clinical utility, developing automated FISH image scanning systems and computer-aided detection (CAD schemes has been attracting research interests. To acquire high-resolution FISH images in a multi-spectral scanning mode, a huge amount of image data with the stack of the multiple three-dimensional (3-D image slices is generated from a single specimen. Automated preprocessing these scanned images to eliminate the non-useful and redundant data is important to make the automated FISH tests acceptable in clinical applications. In this study, a dual-detector fluorescence image scanning system was applied to scan four specimen slides with FISH-probed chromosome X. A CAD scheme was developed to detect analyzable interphase cells and map the multiple imaging slices recorded FISH-probed signals into the 2-D projection images. CAD scheme was then applied to each projection image to detect analyzable interphase cells using an adaptive multiple-threshold algorithm, identify FISH-probed signals using a top-hat transform, and compute the ratios between the normal and abnormal cells. To assess CAD performance, the FISH-probed signals were also independently visually detected by an observer. The Kappa coefficients for agreement between CAD and observer ranged from 0.69 to 1.0 in detecting/counting FISH signal spots in four testing samples. The study demonstrated the feasibility of automated FISH signal analysis that applying a CAD scheme to the automated generated 2-D projection images.

  16. Fluorescence, Aqua MODIS, NPP, 0.125 degrees, Gulf of Mexico

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS measures chlorophyll fluorescence, which gives insight into the physiology of phytoplankton in the ocean. When phytoplankton are under stress, the rate at...

  17. Pulse amplitude modulated chlorophyll fluorometer

    Science.gov (United States)

    Greenbaum, Elias; Wu, Jie

    2015-12-29

    Chlorophyll fluorometry may be used for detecting toxins in a sample because of changes in micro algae. A portable lab on a chip ("LOAC") based chlorophyll fluorometer may be used for toxin detection and environmental monitoring. In particular, the system may include a microfluidic pulse amplitude modulated ("PAM") chlorophyll fluorometer. The LOAC PAM chlorophyll fluorometer may analyze microalgae and cyanobacteria that grow naturally in source drinking water.

  18. Estresse salino em duas variedades de cana-de-açúcar: enzimas do sistema antioxidativo e fluorescência da clorofila Salinity stress in two varieties of sugar cane: enzymes of the antioxidant system and chlorophyll fluorescence

    Directory of Open Access Journals (Sweden)

    Lilia Willadino

    2011-06-01

    Full Text Available O Brasil destaca-se por ser o maior produtor de cana-de-açúcar (Saccharum officinarum L. e por dominar todos os estágios da tecnologia de produção de açúcar e etanol. Atualmente se observa a expansão dessa cultura para a região semiárida brasileira, a qual apresenta solos propensos à salinização. O presente trabalho objetivou avaliar a resposta à salinidade de duas variedades de cana-de-açúcar. O ensaio foi implantado em casa de vegetação, em delineamento inteiramente casualizado, em esquema fatorial 2 x 8 com cinco repetições, correspondendo a duas variedades de cana-de-açúcar (RB867515 e RB863129 e oito níveis de NaCl (0; 25; 50; 75; 100; 125; 150; 200 mM de NaCl. A salinidade induziu aumento na fluorescência e diminuição na concentração de clorofila em ambas as variedades. A redução da clorofila, entretanto, foi maior na variedade RB867515. Observou-se, nesta mesma variedade, aumento da atividade da peroxidase do ascorbato (APX e da catalase (CAT, enquanto na variedade RB863129 ocorreu redução na atividade dessas enzimas. Esses resultados indicam que a variedade RB867515 apresenta um mecanismo mais eficiente na proteção da planta contra danos no aparato fotoquímico e contra a ação de espécies reativas de oxigênio, em particular o H2O2.Brazil is seen as being the largest producer of sugarcane (Saccharum officinarum L. and of mastering all stages in the production of sugar and ethanol. Currently this production is being expanded into the semi-arid regions of Brazil, where there are soil-types prone to salinity. This study aimed to evaluate the response to salinity in two sugarcane genotypes, RB867515 and RB863129. Salinity caused an increase in chlorophyll fluorescence and a reduction of chlorophyll concentration in both varieties. The reduction of chlorophyll however was higher in RB867515. In this same type, an increase in the activity of ascorbate peroxidase (APX and catalase (CAT was observed, while in

  19. Measuring chlorophyll a and 14C-labeled photosynthate in aquatic angiosperms by the use of a tissue solubilizer

    International Nuclear Information System (INIS)

    Beer, S.; Stewart, A.J.; Wetzel, R.G.

    1982-01-01

    A compound that quantitatively correlated with chlorophyll a could be measured fluorometrically in the extracts of leaves of three aquatic angiosperms (Myriophyllum heterophyllum Michx., Potamogeton crispus L., Elodea canadensis Michx.) treated with the tissue solubilizer BTS-450. Fluorescent characteristics of the solubilized plant tissues were stable for several weeks in the dark at temperatures up to 60 0 C but rapidly degraded in sunlight or when acidified. 14 C-Labeled photosynthate, which had been fixed by leaf discs during 1- to 10-hour exposure to H 14 CO 3 , was also readily extracted by the tissue solubilizer. Solubilizer extraction can, therefore, be use to determine both chlorophyll a content and 14 C incorporation rates in the same leaf sample. The method is practical, because no grinding is required, the fluorescent characteristics of the extracts are stable, and analyses can be performed with very little plant material

  20. Discrete redox signaling pathways regulate photosynthetic light-harvesting and chloroplast gene transcription.

    Directory of Open Access Journals (Sweden)

    John F Allen

    Full Text Available In photosynthesis in chloroplasts, two related regulatory processes balance the actions of photosystems I and II. These processes are short-term, post-translational redistribution of light-harvesting capacity, and long-term adjustment of photosystem stoichiometry initiated by control of chloroplast DNA transcription. Both responses are initiated by changes in the redox state of the electron carrier, plastoquinone, which connects the two photosystems. Chloroplast Sensor Kinase (CSK is a regulator of transcription of chloroplast genes for reaction centres of the two photosystems, and a sensor of plastoquinone redox state. We asked whether CSK is also involved in regulation of absorbed light energy distribution by phosphorylation of light-harvesting complex II (LHC II. Chloroplast thylakoid membranes isolated from a CSK T-DNA insertion mutant and from wild-type Arabidopsis thaliana exhibit similar light- and redox-induced (32P-labelling of LHC II and changes in 77 K chlorophyll fluorescence emission spectra, while room-temperature chlorophyll fluorescence emission transients from Arabidopsis leaves are perturbed by inactivation of CSK. The results indicate indirect, pleiotropic effects of reaction centre gene transcription on regulation of photosynthetic light-harvesting in vivo. A single, direct redox signal is transmitted separately to discrete transcriptional and post-translational branches of an integrated cytoplasmic regulatory system.

  1. Comparative assessment of single and joint effects of diuron and Irgarol 1051 on Arctic and temperate microalgae using chlorophyll a fluorescence imaging

    KAUST Repository

    Kottuparambil, Sreejith

    2017-02-06

    Ship groundings and ice-breakers can cause pollution of the polar environment with antifouling biocides such as diuron and Irgarol 1051. The present study used pulse amplitude modulated fluorometry to compare single and joint toxicities of diuron and Irgarol 1051 on two freshwater taxa of microalgae (Chlorella and Chlamydomonas) originating from Arctic and temperate regions. 30min acute toxicity tests using chlorophyll a (Chl a) fluorescence revealed that Arctic strains of microalgae were more sensitive to herbicides than their temperate counterparts. Diuron and Irgarol 1051 had equal toxicities in the Arctic species, while Irgarol 1051 was more toxic (EC50=5.55–14.70μgL−1) than diuron (EC50=12.90–>40μgL−1) in the temperate species. Toxicity assessment of various mixtures of diuron and Irgarol 1051 revealed antagonistic, additive, and synergistic effects. Our data suggest that herbicides can adversely affect photosynthesis in Arctic microalgae at relatively low levels, and their impact can increase under complex mixture conditions.

  2. Comparative assessment of single and joint effects of diuron and Irgarol 1051 on Arctic and temperate microalgae using chlorophyll a fluorescence imaging

    KAUST Repository

    Kottuparambil, Sreejith; Brown, Murray T.; Park, Jihae; Choi, Soyeon; Lee, Hojun; Choi, Han-Gu; Depuydt, Stephen; Han, Taejun

    2017-01-01

    Ship groundings and ice-breakers can cause pollution of the polar environment with antifouling biocides such as diuron and Irgarol 1051. The present study used pulse amplitude modulated fluorometry to compare single and joint toxicities of diuron and Irgarol 1051 on two freshwater taxa of microalgae (Chlorella and Chlamydomonas) originating from Arctic and temperate regions. 30min acute toxicity tests using chlorophyll a (Chl a) fluorescence revealed that Arctic strains of microalgae were more sensitive to herbicides than their temperate counterparts. Diuron and Irgarol 1051 had equal toxicities in the Arctic species, while Irgarol 1051 was more toxic (EC50=5.55–14.70μgL−1) than diuron (EC50=12.90–>40μgL−1) in the temperate species. Toxicity assessment of various mixtures of diuron and Irgarol 1051 revealed antagonistic, additive, and synergistic effects. Our data suggest that herbicides can adversely affect photosynthesis in Arctic microalgae at relatively low levels, and their impact can increase under complex mixture conditions.

  3. Osmotic adjustment, gas exchanges and chlorophyll fluorescence of a hexaploid triticale and its parental species under salt stress.

    Science.gov (United States)

    Morant-Manceau, Annick; Pradier, Elisabeth; Tremblin, Gérard

    2004-01-01

    The effect of salt stress (NaCl 85.7 or 110 mmol/L) was investigated in the triticale T300 and its parental species, Triticum dicoccum farrum (Triticum df) and Secale cereale cv. Petkus. Triticum df and T300 were more salt-tolerant than the rye (110 mmol/L NaCl was the highest concentration allowing rye growth to the three-leaf stage). Na+, K+ and Cl- ions accounted for almost half of the osmotic adjustment in Triticum df and T300, and up to 90% in rye. Salinity decreased the net photosynthesis and transpiration rates of the three cereals as compared to control plants, but induced no significant change in chlorophyll a fluorescence parameters. Water-use efficiency (WUE) increased with salinity. In the presence of 110 mmol/L NaCl, the K+/Na+ ratio decreased markedly in rye as compared to the other two cereals. Proline concentration, which increased in Triticum df and T300, could have protected membrane selectivity in favour of K+. Proline content remained low in rye, and increasing soluble sugar content did not appear to prevent competition between Na+ and K+. The salt sensitivity of rye could be due to low K+ uptake in the presence of a high NaCl concentration.

  4. Detection and Interpretation of Fluorescence Signals Generated by Excitable Cells and Tissues

    Science.gov (United States)

    Costantino, Anthony J.

    Part 1: High-Sensitivity Amplifiers for Detecting Fluorescence . Monitoring electrical activity and Cai 2+ transients in biological tissues and individual cells increasingly utilizes optical sensors based on voltage-dependent and Cai 2+-dependent fluorescent dyes. However, achieving satisfactory signal-to-noise ratios (SNR) often requires increased illumination intensities and/or dye concentrations, which results in photo-toxicity, photo-bleaching and other adverse effects limiting the utility of optical recordings. The most challenging are the recordings from individual cardiac myocytes and neurons. Here we demonstrate that by optimizing a conventional transimpedance topology one can achieve a 10-20 fold increase of sensitivity with photodiode-based recording systems (dependent on application). We provide a detailed comparative analysis of the dynamic and noise characteristics of different transimpedance amplifier topologies as well as the example(s) of their practical implementation. Part 2: Light-Scattering Models for Interpretation of Fluorescence Data. Current interest in understanding light transport in cardiac tissue has been motivated in part by increased use of voltage-sensitive and Ca i2+-sensitive fluorescent probes to map electrical impulse propagation and Cai2+-transients in the heart. The fluorescent signals are recorded using such probes represent contributions from different layers of myocardial tissue and are greatly affected by light scattering. The interpretation of these signals thus requires deconvolution which would not be possible without detailed models of light transport in the respective tissue. Which involves the experimental measurements of the absorption, scattering, and anisotropy coefficients, mua, mu s, and g respectively. The aim of the second part of our thesis was to derive a new method for deriving these parameters from high spatial resolution measurements of forward-directed flux (FDF). To this end, we carried out high spatial

  5. Performance of spectral fitting methods for vegetation fluorescence quantification

    NARCIS (Netherlands)

    Meroni, M.; Busetto, D.; Colombo, R.; Guanter, L.; Moreno, J.; Verhoef, W.

    2010-01-01

    The Fraunhofer Line Discriminator (FLD) principle has long been considered as the reference method to quantify solar-induced chlorophyll fluorescence (F) from passive remote sensing measurements. Recently, alternative retrieval algorithms based on the spectral fitting of hyperspectral radiance

  6. Photosynthesis monitoring to optimize growth of microalgal mass cultures: application of chlorophyll fluorescence techniques

    Czech Academy of Sciences Publication Activity Database

    Malapascua, José R.F.; Jerez, Celia G.; Sergejevova, Magda; Figueroa, Felix L.; Masojídek, Jiří

    2014-01-01

    Roč. 22, č. 2014 (2014), s. 123-140 ISSN 1864-7790 R&D Projects: GA MŠk ED2.1.00/03.0110; GA MŠk EE2.3.30.0059 Grant - others:ACTION(AT) CTM2011-15659-E Institutional support: RVO:61388971 Keywords : chlorophyll * biomass * photosynthesis Subject RIV: EE - Microbiology, Virology Impact factor: 1.258, year: 2014

  7. Photosynthetic bark: use of chlorophyll absorption continuum index to estimate Boswellia papyrifera bark chlorophyll content

    NARCIS (Netherlands)

    Girma, A.; Skidmore, A.K.; Bie, de C.A.J.M.; Bongers, F.; Schlerf, M.

    2013-01-01

    Quantification of chlorophyll content provides useful insight into the physiological performance of plants. Several leaf chlorophyll estimation techniques, using hyperspectral instruments, are available. However, to our knowledge, a non-destructive bark chlorophyll estimation technique is not

  8. Photosynthetic bark : use of chlorophyll absorption continuum index to estimate Boswellia papyrifera bark chlorophyll content

    NARCIS (Netherlands)

    Girma Gebrekidan, A.; Skidmore, A.K.; de Bie, C.A.J.M.; Bongers, Frans; Schlerf, Martin; Schlerf, M.

    2013-01-01

    Quantification of chlorophyll content provides useful insight into the physiological performance of plants. Several leaf chlorophyll estimation techniques, using hyperspectral instruments, are available. However, to our knowledge, a non-destructive bark chlorophyll estimation technique is not

  9. Fluorescent protein pair emit intracellular FRET signal suitable for FACS screening

    International Nuclear Information System (INIS)

    Johansson, Daniel X.; Brismar, Hjalmar; Persson, Mats A.A.

    2007-01-01

    The fluorescent proteins ECFP and HcRed were shown to give an easily resolved FRET-signal when expressed as a fusion inside mammalian cells. HeLa-tat cells expressing ECFP, pHcRed, or the fusion protein pHcRed-ECFP were analyzed by flow cytometry after excitation of ECFP. Cells expressing HcRed-ECFP, or ECFP and HcRed, were mixed and FACS-sorted for FRET positive cells: HcRed-ECFP cells were greatly enriched (72 times). Next, cloned human antibodies were fused with ECFP and expressed anchored to the ER membrane. Their cognate antigens (HIV-1 gp120 or gp41) were fused to HcRed and co-expressed in the ER. An increase of 13.5 ± 1.5% (mean ± SEM) and 8.0 ± 0.7% in ECFP fluorescence for the specific antibodies reacting with gp120 or gp41, respectively, was noted after photobleaching. A positive control (HcRed-ECFP) gave a 14.8 ± 2.6% increase. Surprisingly, the unspecific antibody (anti-TT) showed 12.1 ± 1.1% increase, possibly because overexpression in the limited ER compartment gave false FRET signals

  10. Chlorophyll a and chlorophyllide a inside liposomes made of saturated and unsaturated lipids: A possible impact of the lipids microenvironment

    Directory of Open Access Journals (Sweden)

    Petrović Sanja M.

    2014-01-01

    Full Text Available The aim of this work was to examine a possible impact of liposomes lipids microenvironment, dictated by a chemical composition of the fatty acid branches, on incorporation and spectral behaviour of chlorophyll a, and its derivative, chlorophyllide a inside small liposomes. The liposomes with the incorporated chlorophylls were made of dimirystoyl phosphatidylcholine (DMPC, and unsaturated phosphatidylcholine (PC, containing significant fractions of unsaturated fatty acid moieties. In order to achieve the goal, both absorption and fluorescence polarization spectroscopy were applied, and the obtained data for the two incorporated pigments, which play a role of molecular sensors, were compared. In addition, quercetin, a well-known antioxidant, was used as the (chlorophylls emission quencher, in order to estimate the type of environment sensed by the two pigments for the two liposomes that differ in chemical composition. The results, based primarily on fluorescence polarization data have shown that the emissions as well as the emission quenching were notably affected by a change in the lipids’ chemical composition. That is an indirect proof of the impact of the liposomes microenvironment on the incorporated pigments’ spectral behaviour.[ Projekat Ministarstva nauke Republike Srbije, br. TR-34012 i br. OI-172044

  11. Classifying apples by the means of fluorescence imaging

    OpenAIRE

    Codrea, Marius C.; Nevalainen, Olli S.; Tyystjärvi, Esa; VAN DE VEN, Martin; VALCKE, Roland

    2004-01-01

    Classification of harvested apples when predicting their storage potential is an important task. This paper describes how chlorophyll a fluorescence images taken in blue light through a red filter, can be used to classify apples. In such an image, fluorescence appears as a relatively homogenous area broken by a number of small nonfluorescing spots, corresponding to normal corky tissue patches, lenticells, and to damaged areas that lower the quality of the apple. The damaged regions appear mor...

  12. Chlorophyll d: the puzzle resolved

    DEFF Research Database (Denmark)

    Larkum, Anthony W D; Kühl, Michael

    2005-01-01

    Chlorophyll a (Chl a) has always been regarded as the sole chlorophyll with a role in photochemical conversion in oxygen-evolving phototrophs, whereas chlorophyll d (Chl d), discovered in small quantities in red algae in 1943, was often regarded as an artefact of isolation. Now, as a result...... of discoveries over the past year, it has become clear that Chl d is the major chlorophyll of a free-living and widely distributed cyanobacterium that lives in light environments depleted in visible light and enhanced in infrared radiation. Moreover, Chl d not only has a light-harvesting role but might also...... replace Chl a in the special pair of chlorophylls in both reactions centers of photosynthesis. Udgivelsesdato: 2005-Aug...

  13. PsbS-specific zeaxanthin-independent changes in fluorescence emission spectrum as a signature of energy-dependent non-photochemical quenching in higher plants.

    Science.gov (United States)

    Zulfugarov, Ismayil S; Tovuu, Altanzaya; Dogsom, Bolormaa; Lee, Chung Yeol; Lee, Choon-Hwan

    2010-05-01

    The PsbS protein of photosystem II is necessary for the development of energy-dependent quenching of chlorophyll (Chl) fluorescence (qE), and PsbS-deficient Arabidopsis plant leaves failed to show qE-specific changes in the steady-state 77 K fluorescence emission spectra observed in wild-type leaves. The difference spectrum between the quenched and un-quenched states showed a negative peak at 682 nm. Although the level of qE development in the zeaxanthin-less npq1-2 mutant plants, which lacked violaxanthin de-epoxidase enzyme, was only half that of wild type, there were no noticeable changes in this qE-dependent difference spectrum. This zeaxanthin-independent DeltaF682 signal was not dependent on state transition, and the signal was not due to photobleaching of pigments either. These results suggest that DeltaF682 signal is formed due to PsbS-specific conformational changes in the quenching site of qE and is a new signature of qE generation in higher plants.

  14. Fluorescence, Aqua MODIS, NPP, 0.05 degrees, West US, Science Quality

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — MODIS measures chlorophyll fluorescence, which gives insight into the physiology of phytoplankton in the ocean. When phytoplankton are under stress, the rate at...

  15. Liquid scintillation counting of chlorophyll

    International Nuclear Information System (INIS)

    Fric, F.; Horickova, B.; Haspel-Horvatovic, E.

    1975-01-01

    A precise and reproducible method of liquid scintillation counting was worked out for measuring the radioactivity of 14 C-labelled chlorophyll a and chlorophyll b solutions without previous bleaching. The spurious count rate caused by luminescence of the scintillant-chlorophyll system is eliminated by using a suitable scintillant and by measuring the radioactivity at 4 to 8 0 C after an appropriate time of dark adaptation. Bleaching of the chlorophyll solutions is necessary only for measuring of very low radioactivity. (author)

  16. Interactions and competition processes among tree species in young experimental mixed forests, assessed with chlorophyll fluorescence and leaf morphology.

    Science.gov (United States)

    Pollastrini, M; Holland, V; Brüggemann, W; Koricheva, J; Jussila, I; Scherer-Lorenzen, M; Berger, S; Bussotti, F

    2014-03-01

    Chlorophyll a fluorescence (ChlF) and leaf morphology were assessed in two sites in Europe (Kaltenborn, Germany, and Satakunta, Finland) within a forest diversity experiment. Trees at Satakunta, planted in 1999, form a stratified canopy, while in Kaltenborn the trees are 7 years old, with no apparent canopy connection among broadleaf species. The following ChlF parameters from measured OJIP transient curves were examined: F(V)/F(M) (a proxy for maximum quantum yield); ΨEo (a proxy for efficiency in transferring an electron from reduced QA to the electron transport chain); I-P phase (a proxy for efficiency of reducing final acceptors beyond PSI); and PItot (total performance index for potential energy conservation from photons absorbed by PSII to reduction of PSI end acceptors). At Satakunta F(V)/F(M) and ΨEo in Betula pendula were higher in monocultures and lower in mixed plots, perhaps due to increasing light availability in mixed plots, which can induce photoinhibition. The opposite trend was observed in Picea abies, which was shaded in mixed plots. At Kaltenborn F(V)/F(M) decreased in Fagus sylvatica and P. abies in mixed plots due to competition both above- and belowground. At Satakunta LMA increased in B. pendula leaves with increasing species richness. Leaf area of ten leaves was reduced in F. sylvatica in mixed plots at Kaltenborn. By up-scaling the overall fluorescence response to plot level (PItot_plot ), a significant positive correlation with tree diversity was found at Kaltenborn, but not at Satakunta. This could suggest that competition/facilitation processes in mixed stands play a significant role in the early stages of forest establishment, but then tend to be compensated in more mature stands. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

  17. Optimization and effects of different culture conditions on growth of Halomicronema hongdechloris – a filamentous cyanobacterium containing chlorophyll f

    Directory of Open Access Journals (Sweden)

    Yaqiong eLi

    2014-02-01

    Full Text Available A chlorophyll f containing cyanobacterium, Halomicronema hongdechloris (H. hongdechloris was isolated from a stromatolite cyanobacterial community. However, the extremely slower growth rate of H. hongdechloris culture became a critical factor, hindering the research on this newly isolated cyanobacterium and the investigation of chlorophyll f-photosynthesis. Therefore, optimizing H. hongdechloris culture conditions has become an essential requirement for future research. This work investigated the effects of various culture conditions, essential nutrients and light environments to determine the optimal growth conditions for H. hongdechloris and the biosynthetic rate of chlorophyll f. Based on the total chlorophyll concentration, an optimal growth rate of 0.22 ± 0.02 day-1 (doubling time: 3.1 ± 0.3 days was observed when cells were grown under continuous illumination with far-red light with an intensity of 20 µE at 32°C in modified K+ES seawater (pH 8.0 with additional supplements of 11.75 mM NaNO3 and 0.15 mM K2HPO4. High performance liquid chromatography on H. hongdechloris pigments confirmed that chlorophyll a is the major chlorophyll and chlorophyll f constitutes approximately 10% of the total chlorophyll from cells grown under far-red light. Fluorescence confocal image analysis demonstrated changes of photosynthetic membranes and the distribution of photopigments in response to different light conditions. The total photosynthetic oxygen evolution yield per cell showed no changes under different light conditions, which confirms the involvement of chlorophyll f in oxygenic photosynthesis. The implications of the presence of chlorophyll f in H. hongdechloris and its relationship to light environment are discussed.

  18. Induction of chlorophyll chimeras and chlorophyll mutations in mungbean (Vigna radiata) cv. T44

    International Nuclear Information System (INIS)

    Singh, V.P.; Yadav, R.D.S.

    1993-01-01

    Uniform and healthy seeds of mungbean (Vigna radiata) cv. T44 were exposed to varying doses of gamma rays, ethyl methane sulphonate (EMS) and combination treatment of gamma rays with EMS. The data were recorded for seed germination, plant survival, frequency and spectrum of chlorophyll chimeras in M 1 and chlorophyll mutations in M 2 generation. Among all, the combination treatments were found most effective for inducing chlorophyll chimeras and chlorophyll mutations than the gamma rays or EMS alone. Of the mutants under reference, the albino, xantha and chlorina showed monogenic recessive while viridis exhibited digenic recessive inheritance. (author). 8 refs., 2 tabs

  19. Autonomous observations of in vivo fluorescence and particle backscatteringin an oceanic oxygen minimum zone.

    Science.gov (United States)

    Whitmire, A L; Letelier, R M; Villagrán, V; Ulloa, O

    2009-11-23

    The eastern South Pacific (ESP) oxygen minimum zone (OMZ) is a permanent hydrographic feature located directly off the coasts of northern Chile and Peru. The ESP OMZ reaches from coastal waters out to thousands of kilometers offshore, and can extend from the near surface to depths greater than 700 m. Oxygen minimum zones support unique microbial assemblages and play an important role in marine elemental cycles. We present results from two autonomous profiling floats that provide nine months of time-series data on temperature, salinity, dissolved oxygen, chlorophyll a, and particulate backscattering in the ESP OMZ. We observed consistently elevated backscattering signals within low-oxygen waters, which appear to be the result of enhanced microbial biomass in the OMZ intermediate waters. We also observed secondary chlorophyll a fluorescence maxima within low-oxygen waters when the upper limit of the OMZ penetrated the base of the photic zone. We suggest that autonomous profiling floats are useful tools for monitoring physical dynamics of OMZs and the microbial response to perturbations in these areas.

  20. Double-staining chromogenic in situ hybridization as a useful alternative to split-signal fluorescence in situ hybridization in lymphoma diagnostics

    DEFF Research Database (Denmark)

    van Rijk, A.; Svenstroup-Poulsen, T.; Jones, M.

    2010-01-01

    within the reach of every pathology laboratory. Design and Methods Our study was initiated to determine the consistency between chromogenic in situ hybridization and fluorescence in situ hybridization, both using split-signal probes developed for the detection of chromosomal breaks. Five hundred...... and actual signal were compared to the original fluorescence hybridization results. In addition, hematoxylin background staining intensity and signal intensity of the double-staining chromogenic in situ hybridization procedure were analyzed. Results With respect to the presence or absence of chromosomal...

  1. Let's Exploit Available Knowledge on Vegetation Fluorescence

    Science.gov (United States)

    Magnani, Federico; Raddi, Sabrina; Mohammed, Gina; Middleton, Elizabeth M.

    2014-01-01

    The potential to measure vegetation fluorescence from space (1) and to derive from it direct information on the gross primary productivity (GPP) of terrestrial ecosystems is probably the most thrilling development in remote sensing and global ecology of recent years, as it moves Earth observation techniques from the detection of canopy biophysics (e.g., fraction of absorbed radiation) and biochemistry (chlorophyll and nitrogen content) to the realm of ecosystem function. The existence of a functional relationship between fluorescence and photosynthesis has been elucidated over the last decade by several laboratories, notably as part of the preliminary studies of the European Space Agency Fluorescence Explorer (FLEX) Earth Explorer Mission. The empirical observation presented by Guanter et al. (2) of a linear relationship between fluorescence radiance and GPP, however, provides the first experimental confirmation of the feasibility of the approach— already thoroughly tested at leaf level—at the desired scale, despite the confounding effects associated with the satellite detection of such a faint signal. A word of clarification is needed here. The use of fluorescence as a probe of leaf photochemistry has been a staple of plant ecophysiology for decades, rooted in a sound understanding of photosynthetic energy dissipation. However, most past studies had to rely for the interpretation of results on active (pulse-saturated) techniques, making them unsuitable for remote-sensing applications. Over recent years, however, novel process based models have been developed for the interpretation of steady-state, solar-induced fluorescence at the leaf to canopy scale (3). We are therefore in a position to move beyond the mere empirical observation of an association between GPP and fluorescence radiance. In particular, Guanter et al. (2) base their analysis on the assumption of a constant ratio between photosynthetic and fluorescence light use efficiencies (equation 3 in ref

  2. Spatio-Temporal Convergence of Maximum Daily Light-Use Efficiency Based on Radiation Absorption by Canopy Chlorophyll

    Science.gov (United States)

    Zhang, Yao; Xiao, Xiangming; Wolf, Sebastian; Wu, Jin; Wu, Xiaocui; Gioli, Beniamino; Wohlfahrt, Georg; Cescatti, Alessandro; van der Tol, Christiaan; Zhou, Sha; Gough, Christopher M.; Gentine, Pierre; Zhang, Yongguang; Steinbrecher, Rainer; Ardö, Jonas

    2018-04-01

    Light-use efficiency (LUE), which quantifies the plants' efficiency in utilizing solar radiation for photosynthetic carbon fixation, is an important factor for gross primary production estimation. Here we use satellite-based solar-induced chlorophyll fluorescence as a proxy for photosynthetically active radiation absorbed by chlorophyll (APARchl) and derive an estimation of the fraction of APARchl (fPARchl) from four remotely sensed vegetation indicators. By comparing maximum LUE estimated at different scales from 127 eddy flux sites, we found that the maximum daily LUE based on PAR absorption by canopy chlorophyll (ɛmaxchl), unlike other expressions of LUE, tends to converge across biome types. The photosynthetic seasonality in tropical forests can also be tracked by the change of fPARchl, suggesting the corresponding ɛmaxchl to have less seasonal variation. This spatio-temporal convergence of LUE derived from fPARchl can be used to build simple but robust gross primary production models and to better constrain process-based models.

  3. Characterization of chlorophyll binding to LIL3.

    Science.gov (United States)

    Mork-Jansson, Astrid Elisabeth; Eichacker, Lutz Andreas

    2018-01-01

    The light harvesting like protein 3 (LIL 3) from higher plants, has been linked to functions in chlorophyll and tocopherol biosynthesis, photo-protection and chlorophyll transfer. However, the binding of chlorophyll to LIL3 is unclear. We present a reconstitution protocol for chlorophyll binding to LIL3 in DDM micelles. It is shown in the absence of lipids and carotenoids that reconstitution of chlorophyll binding to in vitro expressed LIL3 requires pre-incubation of reaction partners at room temperature. We show chlorophyll a but not chlorophyll b binding to LIL3 at a molar ratio of 1:1. Neither dynamic light scattering nor native PAGE, enabled a discrimination between binding of chlorophyll a and/or b to LIL3.

  4. Phytohormone and Light Regulation of Chlorophyll Degradation

    Directory of Open Access Journals (Sweden)

    Xiaoyu Zhu

    2017-11-01

    Full Text Available Degreening, due to the net loss of chlorophyll (Chl, is the most prominent symptom during the processes of leaf senescence, fruit ripening, and seed maturation. Over the last decade or so, extensive identifications of Chl catabolic genes (CCGs have led to the revelation of the biochemical pathway of Chl degradation. As such, exploration of the regulatory mechanism of the degreening process is greatly facilitated. During the past few years, substantial progress has been made in elucidating the regulation of Chl degradation, particularly via the mediation of major phytohormones' signaling. Intriguingly, ethylene and abscisic acid's signaling have been demonstrated to interweave with light signaling in mediating the regulation of Chl degradation. In this review, we briefly summarize this progress, with an effort on providing a framework for further investigation of multifaceted and hierarchical regulations of Chl degradation.

  5. Diurnal and Seasonal Responses of High Frequency Chlorophyll Fluorescence and PRI Measurements to Abiotic Stress in Almonds

    Science.gov (United States)

    Bambach-Ortiz, N. E.; Paw U, K. T.

    2016-12-01

    Plants have evolved to efficiently utilize light to synthesize energy-rich carbon compounds, and at the same time, dissipate absorbed but excessive photon that would otherwise transfer excitation energy to potentially toxic reactive oxygen species (ROS). Nevertheless, even the most rapidly growing plants with the highest rates of photosynthesis only utilize about half of the light their leaves absorb during the hours of peak irradiance in sun-exposed habitats. Usually, that daily peak of irradiance coincides with high temperature and a high vapor pressure deficit, which are conditions related to plant stomata closure. Consequently, specially in water stressed environments, plants need to have mechanisms to dissipate most of absorbed photons. Plants avoid photo-oxidative damage of the photosynthetic apparatus due to the formation of ROS under excess light using different mechanisms in order to either lower the amount of ROS formation or detoxify already formed ROS. Photoinhibition is defined as a reduction in photosynthetic activity due largely to a sustained reduction in the photochemical efficiency of Photosystem II (PSII), which can be assessed by monitoring Chlorophyll a fluorescence (ChlF). Alternatively, monitoring abiotic stress effects upon photosynthetic activity and photoinhibition may be possible using high frequency spectral reflectance sensors. We aim to find the potential relationships between high frequency PRI and ChlF as indicators of photoinhibition and permanent photodamage at a seasonal scale. Preliminary results show that PRI responses are sensitive to photoinhibition, but provide a poor representation of permanent photodamage observed at a seasonal scale.

  6. Revisiting chlorophyll extraction methods in biological soil crusts – methodology for determination of chlorophyll a and chlorophyll a + b as compared to previous methods

    Directory of Open Access Journals (Sweden)

    J. Caesar

    2018-03-01

    Full Text Available Chlorophyll concentrations of biological soil crust (biocrust samples are commonly determined to quantify the relevance of photosynthetically active organisms within these surface soil communities. Whereas chlorophyll extraction methods for freshwater algae and leaf tissues of vascular plants are well established, there is still some uncertainty regarding the optimal extraction method for biocrusts, where organism composition is highly variable and samples comprise major amounts of soil. In this study we analyzed the efficiency of two different chlorophyll extraction solvents, the effect of grinding the soil samples prior to the extraction procedure, and the impact of shaking as an intermediate step during extraction. The analyses were conducted on four different types of biocrusts. Our results show that for all biocrust types chlorophyll contents obtained with ethanol were significantly lower than those obtained using dimethyl sulfoxide (DMSO as a solvent. Grinding of biocrust samples prior to analysis caused a highly significant decrease in chlorophyll content for green algal lichen- and cyanolichen-dominated biocrusts, and a tendency towards lower values for moss- and algae-dominated biocrusts. Shaking of the samples after each extraction step had a significant positive effect on the chlorophyll content of green algal lichen- and cyanolichen-dominated biocrusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest the addition of an intermediate shaking step for complete chlorophyll extraction (see Supplement S6 for detailed manual. Determination of a universal chlorophyll extraction method for biocrusts is essential for the inter-comparability of publications conducted across all continents.

  7. Chlorophyll: The wonder pigment

    Digital Repository Service at National Institute of Oceanography (India)

    Bhat, S.R.

    Chlorophyll, the green plant pigment, a 'real life force' of living beings, besides synthesizing food, is a great source of vitamins, minerals and other phytochemicals. Adding chlorophyll rich food to our diet fortifies our body against health...

  8. Sun-induced fluorescence - a new probe of photosynthesis: First maps from the imaging spectrometer HyPlant

    Czech Academy of Sciences Publication Activity Database

    Rascher, U.; Alonso, A.; Burkart, A.; Cilia, C.; Cogliati, S.; Colombo, R.; Damm, A.; Drusch, M.; Guanter, L.; Hanuš, Jan; Hyvarinen, T.; Jullita, T.; Jussila, J.; Kataja, K.; Kokkalis, P.; Kraft, S.; Kraska, T.; Matveeva, M.; Moreno, J.; Müller, O.; Panigada, C.; Pikl, Miroslav; Pinto, F.; Prey, L.; Pude, F.; Rossini, M.; Schickling, A.; Schurr, E.; Schüttemeyer, D.; Verrlest, J.; Zemek, František

    2015-01-01

    Roč. 21, č. 12 (2015), s. 4673-4684 ISSN 1354-1013 Institutional support: RVO:67179843 Keywords : airborne measurements * chlorophyll fluorescence * FLEX * HyPlant * imaging spectroscopy * photosynthesis * remote sensing * sun-induced fluorescence * vegetation monitoring Subject RIV: EH - Ecology, Behaviour Impact factor: 8.444, year: 2015

  9. An extended PROSPECT: Advance in the leaf optical properties model separating total chlorophylls into chlorophyll a and b.

    Science.gov (United States)

    Zhang, Yao; Huang, Jingfeng; Wang, Fumin; Blackburn, George Alan; Zhang, Hankui K; Wang, Xiuzhen; Wei, Chuanwen; Zhang, Kangyu; Wei, Chen

    2017-07-25

    The PROSPECT leaf optical model has, to date, well-separated the effects of total chlorophyll and carotenoids on leaf reflectance and transmittance in the 400-800 nm. Considering variations in chlorophyll a:b ratio with leaf age and physiological stress, a further separation of total plant-based chlorophylls into chlorophyll a and chlorophyll b is necessary for advanced monitoring of plant growth. In this study, we present an extended version of PROSPECT model (hereafter referred to as PROSPECT-MP) that can combine the effects of chlorophyll a, chlorophyll b and carotenoids on leaf directional hemispherical reflectance and transmittance (DHR and DHT) in the 400-800 nm. The LOPEX93 dataset was used to evaluate the capabilities of PROSPECT-MP for spectra modelling and pigment retrieval. The results show that PROSPECT-MP can both simultaneously retrieve leaf chlorophyll a and b, and also performs better than PROSPECT-5 in retrieving carotenoids concentrations. As for the simulation of DHR and DHT, the performances of PROSPECT-MP are similar to that of PROSPECT-5. This study demonstrates the potential of PROSPECT-MP for improving capabilities of remote sensing of leaf photosynthetic pigments (chlorophyll a, chlorophyll b and carotenoids) and for providing a framework for future refinements in the modelling of leaf optical properties.

  10. Double-labeled donor probe can enhance the signal of fluorescence resonance energy transfer (FRET) in detection of nucleic acid hybridization

    Science.gov (United States)

    Okamura, Yukio; Kondo, Satoshi; Sase, Ichiro; Suga, Takayuki; Mise, Kazuyuki; Furusawa, Iwao; Kawakami, Shigeki; Watanabe, Yuichiro

    2000-01-01

    A set of fluorescently-labeled DNA probes that hybridize with the target RNA and produce fluorescence resonance energy transfer (FRET) signals can be utilized for the detection of specific RNA. We have developed probe sets to detect and discriminate single-strand RNA molecules of plant viral genome, and sought a method to improve the FRET signals to handle in vivo applications. Consequently, we found that a double-labeled donor probe labeled with Bodipy dye yielded a remarkable increase in fluorescence intensity compared to a single-labeled donor probe used in an ordinary FRET. This double-labeled donor system can be easily applied to improve various FRET probes since the dependence upon sequence and label position in enhancement is not as strict. Furthermore this method could be applied to other nucleic acid substances, such as oligo RNA and phosphorothioate oligonucleotides (S-oligos) to enhance FRET signal. Although the double-labeled donor probes labeled with a variety of fluorophores had unexpected properties (strange UV-visible absorption spectra, decrease of intensity and decay of donor fluorescence) compared with single-labeled ones, they had no relation to FRET enhancement. This signal amplification mechanism cannot be explained simply based on our current results and knowledge of FRET. Yet it is possible to utilize this double-labeled donor system in various applications of FRET as a simple signal-enhancement method. PMID:11121494

  11. One-electron oxidation of photosynthetic pigments in micelles. Bacteriochlorophyll a, chlorophyll a, chlorophyll b, and pheophytin a

    International Nuclear Information System (INIS)

    Chauvet, J.P.

    1981-01-01

    Chlorophyll a, chlorophyll b, and bacteriochlorophyll a in aqueous micellar solutions of Trition X 100 (2%) are readily oxidized by pulse-radiolytically generated N 3 ., Br 2 - ., and (SCN) 2 - . radicals at nearly diffusion-controlled rates. The kinetic study suggests that pigment molecules occupy multiple sites in the micelle. Pheophytin a is only oxidized by N 3 . and Br 2 - . radicals. The absolute spectra and the molar extinction coefficients of chlorophyll a, bacteriochlorophyll a, chlorophyll b, and pheophytin a cations have been determined. The chlorophyll a cation has been observed in the presence of pigment aggregates

  12. Arabidopsis chlorophyll biosynthesis: an essential balance between the methylerythritol phosphate and tetrapyrrole pathways.

    Science.gov (United States)

    Kim, Se; Schlicke, Hagen; Van Ree, Kalie; Karvonen, Kristine; Subramaniam, Anant; Richter, Andreas; Grimm, Bernhard; Braam, Janet

    2013-12-01

    Chlorophyll, essential for photosynthesis, is composed of a chlorin ring and a geranylgeranyl diphosphate (GGPP)-derived isoprenoid, which are generated by the tetrapyrrole and methylerythritol phosphate (MEP) biosynthesis pathways, respectively. Although a functional MEP pathway is essential for plant viability, the underlying basis of the requirement has been unclear. We hypothesized that MEP pathway inhibition is lethal because a reduction in GGPP availability results in a stoichiometric imbalance in tetrapyrrolic chlorophyll precursors, which can cause deadly photooxidative stress. Consistent with this hypothesis, lethality of MEP pathway inhibition in Arabidopsis thaliana by fosmidomycin (FSM) is light dependent, and toxicity of MEP pathway inhibition is reduced by genetic and chemical impairment of the tetrapyrrole pathway. In addition, FSM treatment causes a transient accumulation of chlorophyllide and transcripts associated with singlet oxygen-induced stress. Furthermore, exogenous provision of the phytol molecule reduces FSM toxicity when the phytol can be modified for chlorophyll incorporation. These data provide an explanation for FSM toxicity and thereby provide enhanced understanding of the mechanisms of FSM resistance. This insight into MEP pathway inhibition consequences underlines the risk plants undertake to synthesize chlorophyll and suggests the existence of regulation, possibly involving chloroplast-to-nucleus retrograde signaling, that may monitor and maintain balance of chlorophyll precursor synthesis.

  13. A novel approach for phytotoxicity assessment by CCD fluorescence imaging

    Czech Academy of Sciences Publication Activity Database

    Gavel, Alan; Maršálek, Blahoslav

    2004-01-01

    Roč. 19, - (2004), s. 429-432 ISSN 1520-4081 R&D Projects: GA AV ČR KSK6005114 Institutional research plan: CEZ:AV0Z6005908 Keywords : phytotoxicity * chlorophyll fluorescence * algal bioassay Subject RIV: EF - Botanics Impact factor: 1.373, year: 2004

  14. Synthesis of chlorophyll b: Localization of chlorophyllide a oxygenase and discovery of a stable radical in the catalytic subunit

    Science.gov (United States)

    Eggink, Laura L; LoBrutto, Russell; Brune, Daniel C; Brusslan, Judy; Yamasato, Akihiro; Tanaka, Ayumi; Hoober, J Kenneth

    2004-01-01

    Background Assembly of stable light-harvesting complexes (LHCs) in the chloroplast of green algae and plants requires synthesis of chlorophyll (Chl) b, a reaction that involves oxygenation of the 7-methyl group of Chl a to a formyl group. This reaction uses molecular oxygen and is catalyzed by chlorophyllide a oxygenase (CAO). The amino acid sequence of CAO predicts mononuclear iron and Rieske iron-sulfur centers in the protein. The mechanism of synthesis of Chl b and localization of this reaction in the chloroplast are essential steps toward understanding LHC assembly. Results Fluorescence of a CAO-GFP fusion protein, transiently expressed in young pea leaves, was found at the periphery of mature chloroplasts and on thylakoid membranes by confocal fluorescence microscopy. However, when membranes from partially degreened cells of Chlamydomonas reinhardtii cw15 were resolved on sucrose gradients, full-length CAO was detected by immunoblot analysis only on the chloroplast envelope inner membrane. The electron paramagnetic resonance spectrum of CAO included a resonance at g = 4.3, assigned to the predicted mononuclear iron center. Instead of a spectrum of the predicted Rieske iron-sulfur center, a nearly symmetrical, approximately 100 Gauss peak-to-trough signal was observed at g = 2.057, with a sensitivity to temperature characteristic of an iron-sulfur center. A remarkably stable radical in the protein was revealed by an isotropic, 9 Gauss peak-to-trough signal at g = 2.0042. Fragmentation of the protein after incorporation of 125I- identified a conserved tyrosine residue (Tyr-422 in Chlamydomonas and Tyr-518 in Arabidopsis) as the radical species. The radical was quenched by chlorophyll a, an indication that it may be involved in the enzymatic reaction. Conclusion CAO was found on the chloroplast envelope and thylakoid membranes in mature chloroplasts but only on the envelope inner membrane in dark-grown C. reinhardtii cells. Such localization provides further

  15. Photochemical and photoelectrochemical quenching of chlorophyll fluorescence in photosystem II

    NARCIS (Netherlands)

    Vredenberg, W.J.; Durchan, M.; Prasil, O.

    2009-01-01

    This paper deals with kinetics and properties of variable fluorescence in leaves and thylakoids upon excitation with low intensity multi-turnover actinic light pulses corresponding with an excitation rate of about 10 Hz. These show a relatively small and amply documented rise in the sub-s time range

  16. Biosynthesis of Chlorophyll a in a Purple Bacterial Phototroph and Assembly into a Plant Chlorophyll-Protein Complex.

    Science.gov (United States)

    Hitchcock, Andrew; Jackson, Philip J; Chidgey, Jack W; Dickman, Mark J; Hunter, C Neil; Canniffe, Daniel P

    2016-09-16

    Improvements to photosynthetic efficiency could be achieved by manipulating pigment biosynthetic pathways of photosynthetic organisms in order to increase the spectral coverage for light absorption. The development of organisms that can produce both bacteriochlorophylls and chlorophylls is one way to achieve this aim, and accordingly we have engineered the bacteriochlorophyll-utilizing anoxygenic phototroph Rhodobacter sphaeroides to make chlorophyll a. Bacteriochlorophyll and chlorophyll share a common biosynthetic pathway up to the precursor chlorophyllide. Deletion of genes responsible for the bacteriochlorophyll-specific modifications of chlorophyllide and replacement of the native bacteriochlorophyll synthase with a cyanobacterial chlorophyll synthase resulted in the production of chlorophyll a. This pigment could be assembled in vivo into the plant water-soluble chlorophyll protein, heterologously produced in Rhodobacter sphaeroides, which represents a proof-of-principle for the engineering of novel antenna complexes that enhance the spectral range of photosynthesis.

  17. Effects of Depilation-Induced Skin Pigmentation and Diet-Induced Fluorescence on In Vivo Fluorescence Imaging

    OpenAIRE

    Kwon, Sunkuk; Sevick-Muraca, Eva M.

    2017-01-01

    Near-infrared fluorescence imaging (NIRFI) and far-red fluorescence imaging (FRFI) were used to investigate effects of depilation-induced skin pigmentation and diet-induced background fluorescence on fluorescent signal amplitude and lymphatic contraction frequency in C57BL6 mice. Far-red fluorescent signal amplitude, but not frequency, was affected by diet-induced fluorescence, which was removed by feeding the mice an alfalfa-free diet, and skin pigmentation further impacted the amplitude mea...

  18. Prooxidative and antioxidative properties of β-carotene in chlorophyll and riboflavin photosensitized oil-in-water emulsions.

    Science.gov (United States)

    Park, JungWoo; Kim, Tae Soo; Kim, Mi-Ja; Lee, JaeHwan

    2013-09-01

    Effects of β-carotene on the oxidative stability of chlorophyll or riboflavin photosensitized oil-in-water (O/W) emulsions were determined by analysing the depleted headspace oxygen content, lipid hydroperoxides, fluorescence intensity, and headspace volatiles. As the concentration of β-carotene increased from 0 to 10, 100, and 1000 μM, the oxidative stability of samples containing chlorophylls decreased in a concentration-dependent manner under light, indicating that β-carotene acted as a prooxidant. However, in riboflavin photosensitized O/W emulsions, 100 and 1000 μM β-carotene inhibited lipid oxidation. Although β-carotene protected both photosensitisers in O/W emulsions, β-carotene displayed antioxidative or prooxidative properties, which depended on the polarity of the photosensitisers. The development of t-2-heptenal and 1-octen-3-ol increased greatly in chlorophyll sensitised O/W emulsions with an increase in β-carotene concentration, implying that more singlet oxygen oxidation occurred due to the higher levels of remaining chlorophylls. However, the content of t-2-heptenal and 1-octen-3-ol in the riboflavin sensitised O/W emulsions was not significantly correlated with the β-carotene concentration, which indicates that β-carotene in the lipid particles effectively quenched singlet oxygen. Copyright © 2013 Elsevier Ltd. All rights reserved.

  19. Angular Normalization of Ground and Satellite Observations of Sun-induced Chlorophyll Fluorescence for Assessing Vegetation Productivity

    Science.gov (United States)

    Chen, J. M.; He, L.; Chou, S.; Ju, W.; Zhang, Y.; Joiner, J.; Liu, J.; Mo, G.

    2017-12-01

    Sun-induced chlorophyll fluorescence (SIF) measured from plant canopies originates mostly from sunlit leaves. Observations of SIF by satellite sensors, such as GOME-2 and GOSAT, are often made over large view zenith angle ranges, causing large changes in the viewed sunlit leaf fraction across the scanning swath. Although observations made by OCO-2 are near nadir, the observed sunlit leaf fraction could still vary greatly due to changes in the solar zenith angle with latitude and time of overpass. To demonstrate the importance of considering the satellite-target-view geometry in using SIF for assessing vegetation productivity, we conducted multi-angle measurements of SIF using a hyperspectral sensor mounted on an automated rotating system over a rice field near Nanjing, China. A method is developed to separate SIF measurements at each angle into sunlit and shaded leaf components, and an angularly normalized canopy-level SIF is obtained as the weighted sum of sunlit and shaded SIF. This normalized SIF is shown to be a much better proxy of GPP of the rice field measured by an eddy covariance system than the unnormalized SIF observations. The same normalization scheme is also applied to the far-red GOME-2 SIF observations on sunny days, and we found that the normalized SIF is better correlated with model-simulated GPP than the original SIF observations. The coefficient of determination (R2) is improved by 0.07±0.04 on global average using the normalization scheme. The most significant improvement in R2 by 0.09±0.04 is found in deciduous broadleaf forests, where the observed sunlit leaf fraction is highly sensitive to solar zenith angle.

  20. Simultaneous recording of fluorescence and electrical signals by photometric patch electrode in deep brain regions in vivo.

    Science.gov (United States)

    Hirai, Yasuharu; Nishino, Eri; Ohmori, Harunori

    2015-06-01

    Despite its widespread use, high-resolution imaging with multiphoton microscopy to record neuronal signals in vivo is limited to the surface of brain tissue because of limited light penetration. Moreover, most imaging studies do not simultaneously record electrical neural activity, which is, however, crucial to understanding brain function. Accordingly, we developed a photometric patch electrode (PME) to overcome the depth limitation of optical measurements and also enable the simultaneous recording of neural electrical responses in deep brain regions. The PME recoding system uses a patch electrode to excite a fluorescent dye and to measure the fluorescence signal as a light guide, to record electrical signal, and to apply chemicals to the recorded cells locally. The optical signal was analyzed by either a spectrometer of high light sensitivity or a photomultiplier tube depending on the kinetics of the responses. We used the PME in Oregon Green BAPTA-1 AM-loaded avian auditory nuclei in vivo to monitor calcium signals and electrical responses. We demonstrated distinct response patterns in three different nuclei of the ascending auditory pathway. On acoustic stimulation, a robust calcium fluorescence response occurred in auditory cortex (field L) neurons that outlasted the electrical response. In the auditory midbrain (inferior colliculus), both responses were transient. In the brain-stem cochlear nucleus magnocellularis, calcium response seemed to be effectively suppressed by the activity of metabotropic glutamate receptors. In conclusion, the PME provides a powerful tool to study brain function in vivo at a tissue depth inaccessible to conventional imaging devices. Copyright © 2015 the American Physiological Society.

  1. Assimilating solar-induced chlorophyll fluorescence into the terrestrial biosphere model BETHY-SCOPE v1.0: model description and information content

    Science.gov (United States)

    Norton, Alexander J.; Rayner, Peter J.; Koffi, Ernest N.; Scholze, Marko

    2018-04-01

    The synthesis of model and observational information using data assimilation can improve our understanding of the terrestrial carbon cycle, a key component of the Earth's climate-carbon system. Here we provide a data assimilation framework for combining observations of solar-induced chlorophyll fluorescence (SIF) and a process-based model to improve estimates of terrestrial carbon uptake or gross primary production (GPP). We then quantify and assess the constraint SIF provides on the uncertainty in global GPP through model process parameters in an error propagation study. By incorporating 1 year of SIF observations from the GOSAT satellite, we find that the parametric uncertainty in global annual GPP is reduced by 73 % from ±19.0 to ±5.2 Pg C yr-1. This improvement is achieved through strong constraint of leaf growth processes and weak to moderate constraint of physiological parameters. We also find that the inclusion of uncertainty in shortwave down-radiation forcing has a net-zero effect on uncertainty in GPP when incorporated into the SIF assimilation framework. This study demonstrates the powerful capacity of SIF to reduce uncertainties in process-based model estimates of GPP and the potential for improving our predictive capability of this uncertain carbon flux.

  2. Measuring and sorting cell populations expressing isospectral fluorescent proteins with different fluorescence lifetimes.

    Directory of Open Access Journals (Sweden)

    Bryan Sands

    Full Text Available Study of signal transduction in live cells benefits from the ability to visualize and quantify light emitted by fluorescent proteins (XFPs fused to different signaling proteins. However, because cell signaling proteins are often present in small numbers, and because the XFPs themselves are poor fluorophores, the amount of emitted light, and the observable signal in these studies, is often small. An XFP's fluorescence lifetime contains additional information about the immediate environment of the fluorophore that can augment the information from its weak light signal. Here, we constructed and expressed in Saccharomyces cerevisiae variants of Teal Fluorescent Protein (TFP and Citrine that were isospectral but had shorter fluorescence lifetimes, ∼ 1.5 ns vs ∼ 3 ns. We modified microscopic and flow cytometric instruments to measure fluorescence lifetimes in live cells. We developed digital hardware and a measure of lifetime called a "pseudophasor" that we could compute quickly enough to permit sorting by lifetime in flow. We used these abilities to sort mixtures of cells expressing TFP and the short-lifetime TFP variant into subpopulations that were respectively 97% and 94% pure. This work demonstrates the feasibility of using information about fluorescence lifetime to help quantify cell signaling in living cells at the high throughput provided by flow cytometry. Moreover, it demonstrates the feasibility of isolating and recovering subpopulations of cells with different XFP lifetimes for subsequent experimentation.

  3. Evaluation of Chlorophyll Fluorescence and Biochemical Traits of Lettuce under Drought Stress and Super Absorbent or Bentonite Application

    Directory of Open Access Journals (Sweden)

    Akram Valizadeh Ghale Beig

    2014-03-01

    Full Text Available The effects of two superabsorbents (natural-bentonite and (synthetic-A 200 on the chlorophyll fluorescence index, proline accumulation, phenolic compounds, antioxidant activity and total carbohydrate in lettuce (Lactuca sativa L. was evaluated. For this purpose, a factorial experiment using completely randomized design with superabsorbents at 3 levels (0, 0.15, 0.30 w/w%, drought stress at 2 levels (60 and 100% of field capacity and 4 replicates was conducted. Results showed that photosystem photochemical efficiency (Fv/Fm II under drought stress (60% FC as well as lower levels of bentonite superabsorbent polymer reduced. The minimum and maximum proline content were obtained in 0.3% bentonite, 100% FC and 0 benetonite, 60% FC, respectively. The lowest and highest phenolic compounds was corresponded to the highest levels in both super absorbents and control respectively, so that the super absorbent and bentonite, reduced phenolic compounds by 62.65 and 66.21% compared to control. 0 and 0.15 wt % bentonite in high drought stress (60% FC showed the highest and 0.3 wt % bentonite and 100% FC attained the lowest level of antioxidant activity. Control bentonite treatment beds at 60% FC and beds containing 0.3 wt. % bentonite in 100% FC, showed the lowest and the highest total carbohydrate content respectively. Results of this study indicate that bentonite can reduce the negative effects of drought stress similar to artificial super absorbent.

  4. Physiological responses of Brassica napus to fulvic acid under water stress: Chlorophyll a fluorescence and antioxidant enzyme activity

    Directory of Open Access Journals (Sweden)

    Ramin Lotfi

    2015-10-01

    Full Text Available The ameliorative effect of fulvic acid (0, 300, and 600 mg L− 1 on photosystem II and antioxidant enzyme activity of the rapeseed (Brassica napus L. plant under water stress (60, 100, and 140 mm evaporation from class A pan was studied using split plots in a randomized complete block design with three replications. Results indicated that application of fulvic acid (FA improved the maximum quantum efficiency of PSII (Fv/Fm and performance index (PI of plants under both well-watered and limited-water conditions. The time span from Fo to Fm and the energy necessary for the closure of all reaction centers was significantly increased, but the size of the plastoquinone pool was reduced with increasing water stress levels. Plants treated with FA had higher peroxidase and catalase activities under all irrigation conditions. Activities of ascorbate peroxidase and superoxide dismutase in plants increased with increasing water stress. Malondialdehyde increased under severe water stress, but application of FA significantly decreased lipid peroxidation. Production of reactive oxygen species (ROS is a common phenomenon in plants under stress. Under this condition, the balance between the production of ROS and the quenching activity of antioxidants is upset, often resulting in oxidative damage. In this study, application of FA significantly increased fluorescence of chlorophyll a, inhibiting ROS production and enhancing antioxidant enzymes activity that destroyed ROS. Thus, ROS in plant cells was reduced under water stress by application of FA and consequently lipid peroxidation was reduced.

  5. Comprehensive chlorophyll composition in the main edible seaweeds.

    Science.gov (United States)

    Chen, Kewei; Ríos, José Julián; Pérez-Gálvez, Antonio; Roca, María

    2017-08-01

    Natural chlorophylls present in seaweeds have been studied regarding their biological activities and health benefit effects. However, detailed studies regarding characterization of the complete chlorophyll profile either qualitatively and quantitatively are scarce. This work deals with the comprehensive spectrometric study of the chlorophyll derivatives present in the five main coloured edible seaweeds. The novel complete MS 2 characterization of five chlorophyll derivatives: chlorophyll c 2 , chlorophyll c 1 , purpurin-18 a, pheophytin d and phytyl-purpurin-18 a has allowed to obtain fragmentation patterns associated with their different structural features. New chlorophyll derivatives have been identified and quantified by first time in red, green and brown seaweeds, including some oxidative structures. Quantitative data of the chlorophyll content comes to achieve significant information for food composition databases in bioactive compounds. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Vegetation Function and Physiology: Photosynthesis, Fluorescence and Non-photochemical Quenching (NPQ)

    Science.gov (United States)

    Zhang, Q.; Yao, T.

    2017-12-01

    Photosynthesis is a basic physiological function of vegetation that relies on PAR provided through photosynthetic pigments (mainly chlorophyll) for plant growth and biomass accumulation. Vegetation chlorophyll (chl) content and non-chlorophyll (non-chl) components vary with plant functional types (PFTs) and growing stages. The PAR absorbed by canopy chlorophyll (APARchl) is associated with photosynthesis (i.e., gross primary production, GPP) while the PAR absorbed by canopy non-chl components (APARnon-chl) is not associated with photosynthesis. Under non-optimal environmental conditions, vegetation is "stressed" and both photosynthesis (GPP) and light use efficiency are reduced, therefore, excess portions of APARchl are discarded as fluorescence or non-photochemical quenching (NPQ). The photochemical reflectance index (PRI) is a measurement related to NPQ. Both PRI and yield of solar induced chlorophyll fluorescence (SIFyield = SIF/APARchl) have been proposed as possible bio-indicators of LUEchl. We have successfully developed an algorithm to distinguish between chlorophyll and non-chl components of vegetation, and to retrieve fractional absorptions of PAR by chlorophyll (fAPARchl) and by non-chl components (fAPARnon-chl) with surface reflectance of MODIS bands 1 - 7. A method originally pioneered by Hanan et al. (2002) has been used to retrieve fAPAR for vegetation photosynthesis (fAPARPSN) at flux tower sites based on the light response curve of tower net ecosystem exchange (NEE) and incident PAR at low light intensity. We have also retrieved the PRI from MODIS data (bands 11 and 1) and have derived SIFyield with the Global Ozone Monitoring Experiment - 2 (GOME-2) SIF data. We find that fAPARPSN at flux tower sites matches well with site fAPARchl, and ratio fAPARnon-chl/fAPARchl varies largely. APARchl can explain >=78% variation in seasonal GPP . We disentangle the possible impact of fAPARchl on PRI from physiological stress response, disentangle the possible

  7. Chlorophyllase in Piper betle L. has a role in chlorophyll homeostasis and senescence dependent chlorophyll breakdown.

    Science.gov (United States)

    Gupta, Supriya; Gupta, Sanjay Mohan; Sane, Aniruddha P; Kumar, Nikhil

    2012-06-01

    Total chlorophyll content and chlorophyllase (chlorophyll-chlorophyllido hydrolase EC 3.1.1.14) activity in fresh leaves of Piper betle L. landrace KS was, respectively, twofold higher and eight fold lower than KV, showing negative correlation between chlorophyll and chlorophyllase activity. Specific chlorophyllase activity was nearly eightfold more in KV than KS. ORF of 918 nt was found in cloned putative chlorophyllase cDNAs from KV and KS. The gene was present as single copy in both the landraces. The encoded polypeptide of 306 amino acids differed only at two positions between the KV and KS; 203 (cysteine to tyrosine) and 301 (glutamine to glycine). Difference in chlorophyllase gene expression between KV and KS was evident in fresh and excised leaves. Up regulation of chlorophyllase gene by ABA and down regulation by BAP was observed in both the landraces; however, there was quantitative difference between KV and KS. Data suggests that chlorophyllase in P. betle is involved in chlorophyll homeostasis and chlorophyll loss during post harvest senescence.

  8. Led induced chlorophyll fluorescence transient imager for measurements of health and stress status of whole plants

    NARCIS (Netherlands)

    Jalink, H.; Schoor, van der R.

    2011-01-01

    We have developed LED (light emitting diode) induced fluorescence transient imaging instrumentation to image the plant health/stress status by calculation of two images: Fv/Fm (variable fluorescence over saturation level of fluorescence) and the time response, tTR, of the fluorescence time curve.

  9. The Use of a Chlorophyll Meter (SPAD-502) for Field Determinations of Red Mangrove (Rhizophora Mangle L.) Leaf Chlorophyll Amount

    Science.gov (United States)

    Connelly, Xana M.

    1997-01-01

    The red mangrove Rhizophora mangle L., is a halophytic woody spermatophyte common to the land-sea interface of tropical and subtropical intertidal zones. It has been reported that 60 to 75% of the coastline of the earth's tropical regions are lined with mangroves. Mangroves help prevent shoreline erosion, provide breeding, nesting and feeding areas for many marine animals and birds. Mangroves are important contributors of primary production in the coastal environment, and this is largely proportional to the standing crop of leaf chlorophylls. Higher intensities of ultraviolet radiation, resulting from stratospheric ozone depletion, can lead to a reduction of chlorophyll in terrestrial plants. Since the most common method for determining chlorophyll concentration is by extraction and this is labor intensive and time consuming, few studies on photosynthetic pigments of mangroves have been reported. Chlorophyll meter readings have been related to leaf chlorophyll content in apples and maples. It has also been correlated to nitrogen status in corn and cotton. Peterson et al., (1993) used a chlorophyll meter to detect nitrogen deficiency in crops and in determining the need for additional nitrogen fertilizer. Efforts to correlate chlorophyll meter measurements to chlorophyll content of mangroves have not been reported. This paper describes the use of a hand-held chlorophyll meter (Minolta SPAD-502) to determine the amount of red mangrove foliar chlorophyll present in the field.

  10. Assessing the Effects of Water Deficit on Photosynthesis Using Parameters Derived from Measurements of Leaf Gas Exchange and of Chlorophyll a Fluorescence.

    Science.gov (United States)

    Urban, Laurent; Aarrouf, Jawad; Bidel, Luc P R

    2017-01-01

    Water deficit (WD) is expected to increase in intensity, frequency and duration in many parts of the world as a consequence of global change, with potential negative effects on plant gas exchange and growth. We review here the parameters that can be derived from measurements made on leaves, in the field, and that can be used to assess the effects of WD on the components of plant photosynthetic rate, including stomatal conductance, mesophyll conductance, photosynthetic capacity, light absorbance, and efficiency of absorbed light conversion into photosynthetic electron transport. We also review some of the parameters related to dissipation of excess energy and to rerouting of electron fluxes. Our focus is mainly on the techniques of gas exchange measurements and of measurements of chlorophyll a fluorescence (ChlF), either alone or combined. But we put also emphasis on some of the parameters derived from analysis of the induction phase of maximal ChlF, notably because they could be used to assess damage to photosystem II. Eventually we briefly present the non-destructive methods based on the ChlF excitation ratio method which can be used to evaluate non-destructively leaf contents in anthocyanins and flavonols.

  11. Assessing the Effects of Water Deficit on Photosynthesis Using Parameters Derived from Measurements of Leaf Gas Exchange and of Chlorophyll a Fluorescence

    Directory of Open Access Journals (Sweden)

    Laurent Urban

    2017-12-01

    Full Text Available Water deficit (WD is expected to increase in intensity, frequency and duration in many parts of the world as a consequence of global change, with potential negative effects on plant gas exchange and growth. We review here the parameters that can be derived from measurements made on leaves, in the field, and that can be used to assess the effects of WD on the components of plant photosynthetic rate, including stomatal conductance, mesophyll conductance, photosynthetic capacity, light absorbance, and efficiency of absorbed light conversion into photosynthetic electron transport. We also review some of the parameters related to dissipation of excess energy and to rerouting of electron fluxes. Our focus is mainly on the techniques of gas exchange measurements and of measurements of chlorophyll a fluorescence (ChlF, either alone or combined. But we put also emphasis on some of the parameters derived from analysis of the induction phase of maximal ChlF, notably because they could be used to assess damage to photosystem II. Eventually we briefly present the non-destructive methods based on the ChlF excitation ratio method which can be used to evaluate non-destructively leaf contents in anthocyanins and flavonols.

  12. Temporal variability of chlorophyll distribution in the Gulf of Mexico: bio-optical data from profiling floats

    Science.gov (United States)

    Pasqueron de Fommervault, Orens; Perez-Brunius, Paula; Damien, Pierre; Camacho-Ibar, Victor F.; Sheinbaum, Julio

    2017-12-01

    Chlorophyll concentration is a key oceanic biogeochemical variable. In the Gulf of Mexico (GOM), its distribution, which is mainly obtained from satellite surface observations and scarce in situ experiments, is still poorly understood. In 2011-2012, eight profiling floats equipped with biogeochemical sensors were deployed for the first time in the GOM and generated an unprecedented dataset that significantly increased the number of chlorophyll vertical distribution measurements in the region. The analysis of these data, once calibrated, permits us to reconsider the spatial and temporal variability of the chlorophyll concentration in the water column. At a seasonal scale, results confirm the surface signal seen by satellites, presenting maximum concentrations in winter and low values in summer. It is shown that the deepening of the mixed layer is the primary factor triggering the chlorophyll surface increase in winter. In the GOM, a possible interpretation is that this surface increase corresponds to a biomass increase. However, the present dataset suggests that the basin-scale climatological surface increase in chlorophyll content results from a vertical redistribution of subsurface chlorophyll and/or photoacclimation processes, rather than a net increase of biomass. One plausible explanation for this is the decoupling between the mixed-layer depth and the deep nutrient reservoir since mixed-layer depth only reaches the nitracline in sporadic events in the observations. Float measurements also provide evidence that the depth and the magnitude of the deep chlorophyll maximum is strongly controlled by the mesoscale variability, with higher chlorophyll biomass generally observed in cyclones rather than anticyclones.

  13. Analysis of sublethal arsenic toxicity to Ceratophyllum demersum: subcellular distribution of arsenic and inhibition of chlorophyll biosynthesis

    Czech Academy of Sciences Publication Activity Database

    Mishra, S.; Alfred, M.; Sobotka, Roman; Andresen, E.; Falkenberg, G.; Küpper, Hendrik

    2016-01-01

    Roč. 67, č. 15 (2016), s. 4639-4646 ISSN 0022-0957 R&D Projects: GA ČR GBP501/12/G055; GA MŠk(CZ) LO1416 Institutional support: RVO:61388971 ; RVO:60077344 Keywords : arsenic toxicity * chlorophyll biosynthesis * subcellular distribution of arsenic * synchrotron micro-X-ray fluorescence Subject RIV: EE - Microbiology, Virology; CE - Biochemistry (BC-A) Impact factor: 5.830, year: 2016

  14. Characterisation of estuarine intertidal macroalgae by laser-induced fluorescence

    DEFF Research Database (Denmark)

    Gameiro, Carla; Utkin, Andrei B.; Sousa Dias Cartaxana, Paulo Jorge

    2015-01-01

    The article reports the application of laser-induced fluorescence (LIF) for the assessment of macroalgae communities of estuarine intertidal areas. The method was applied for the characterisation of fifteen intertidal macroalgae species of the Tagus estuary, Portugal, and adjacent coastal area...... spectra were determined by differences in the main fluorescing pigments: phycoerythrin, phycocyanin and chlorophyll a (Chl a). In the green and brown macroalgae groups, the relative significance of the two emission maxima seems to be related to the thickness of the photosynthetic layer. In thick...... macroalgae, like Codium tomentosum or Fucus vesiculosus, the contribution of the far-red emission fluorescence peak was more significant, most probably due to re-absorption of the emitted red Chl a fluorescence within the dense photosynthetic layer. Similarly, an increase in the number of layers of the thin...

  15. The AtCAO gene, encoding chlorophyll a oxygenase, is required for chlorophyll b synthesis in Arabidopsis thaliana

    Science.gov (United States)

    Espineda, Cromwell E.; Linford, Alicia S.; Devine, Domenica; Brusslan, Judy A.

    1999-01-01

    Chlorophyll b is synthesized from chlorophyll a and is found in the light-harvesting complexes of prochlorophytes, green algae, and both nonvascular and vascular plants. We have used conserved motifs from the chlorophyll a oxygenase (CAO) gene from Chlamydomonas reinhardtii to isolate a homologue from Arabidopsis thaliana. This gene, AtCAO, is mutated in both leaky and null chlorina1 alleles, and DNA sequence changes cosegregate with the mutant phenotype. AtCAO mRNA levels are higher in three different mutants that have reduced levels of chlorophyll b, suggesting that plants that do not have sufficient chlorophyll b up-regulate AtCAO gene expression. Additionally, AtCAO mRNA levels decrease in plants that are grown under dim-light conditions. We have also found that the six major Lhcb proteins do not accumulate in the null ch1-3 allele. PMID:10468639

  16. Fluorescence resonance energy transfer (FRET-based subcellular visualization of pathogen-induced host receptor signaling

    Directory of Open Access Journals (Sweden)

    Zimmermann Timo

    2009-11-01

    Full Text Available Abstract Background Bacteria-triggered signaling events in infected host cells are key elements in shaping the host response to pathogens. Within the eukaryotic cell, signaling complexes are spatially organized. However, the investigation of protein-protein interactions triggered by bacterial infection in the cellular context is technically challenging. Here, we provide a methodological approach to exploit fluorescence resonance energy transfer (FRET to visualize pathogen-initiated signaling events in human cells. Results Live-cell microscopy revealed the transient recruitment of the Src family tyrosine kinase Hck upon bacterial engagement of the receptor carcinoembryonic antigen-related cell adhesion molecule 3 (CEACAM3. In cells expressing a CEACAM3 variant lacking the cytoplasmic domain, the Src homology 2 (SH2 domain of Hck (Hck-SH2 was not recruited, even though bacteria still bound to the receptor. FRET measurements on the basis of whole cell lysates revealed intimate binding between Hck-SH2 (using enhanced yellow fluorescent protein (YPet-Hck-SH2 and the tyrosine-phosphorylated enhanced cyan fluorescent protein-labeled cytoplasmic domain of wild-type CEACAM3 (CEACAM3 WT-CyPet and a flow cytometry-based FRET approach verified this association in intact cells. Using confocal microscopy and acceptor photobleaching, FRET between Hck-SH2 and CEACAM3 was localized to the sites of bacteria-host cell contact. Conclusion These data demonstrate not only the intimate binding of the SH2 domain of Hck to the tyrosine-phosphorylated cytoplasmic domain of CEACAM3 in intact cells, but furthermore, FRET measurements allow the subcellular localization of this process during bacterial infection. FRET-based assays are valuable tools to resolve bacteria-induced protein-protein interactions in the context of the intact host cell.

  17. Assessment of in vivo fluorescence method for chlorophyll-a estimation in optically complex waters (Curuai floodplain, Pará - Brazil Avaliação do método de fluorescência in vivo para a estimativa da concentração de clorofila-a em águas opticamente complexas (planície de inundação do Curuai, Pará - Brasil

    Directory of Open Access Journals (Sweden)

    Rafael Damiati Ferreira

    2012-12-01

    Full Text Available AIM: This paper describes an experiment carried out to evaluate in vivo fluorescence (IVF as an alternative method for chlorophyll-a estimation in optically complex aquatic environment (Amazon floodplain lakes METHODS: The experiment consisted of collecting in situ measurements at 26 sampling stations distributed throughout Curuai floodplain lakes. For each sampling station the following parameters were measured: temperature, turbidity, depth, Secchi depth, chlorophyll-a (Chl-a concentration, total suspended solids (TSS and dissolved organic carbon (DOC, concurrently with several transects of IVF. Two methods were tested for quantifying the fluorescence measurement to be used as input for the chlorophyll-a estimates: instantaneous IFV and average IVF. Global and regional models were tested and assessed by analyzing optically active components (Chl-a, DOC and TSS of the water. RESULTS: Regardless of fluorescence estimating method, the results indicate that it was not possible to fit a global model for estimating Chl-a from IVF for all the lakes in the Curuai floodplain. Regional models provided contrasting results according to the concentration of optically active components. The best results were observed for aquatic systems with a single dominant component homogenously distributed throughout the lake. The results highlight the influence of the ratios Chl-a/TSS, Chl-a/DOC and Phaephytin/Chl-a in the relationship between IVF and chlorophyll concentration. CONCLUSIONS: It was not possible to develop a global model to account for the entire region of Curuai floodplain. The search for regional models provided insights on the main factors affecting the relationship between IVF and Chl-a concentration. Nevertheless this work reinforces the great potential of fluorometry technique, since even with a small number of samples it was possible to set a good model in the main lake of the Curuai floodplain. In spite the fact that this is not an accurate

  18. Cleavable DNA-protein hybrid molecular beacon: A novel efficient signal translator for sensitive fluorescence anisotropy bioassay.

    Science.gov (United States)

    Hu, Pan; Yang, Bin

    2016-01-15

    Due to its unique features such as high sensitivity, homogeneous format, and independence on fluorescent intensity, fluorescence anisotropy (FA) assay has become a hotspot of study in oligonucleotide-based bioassays. However, until now most FA probes require carefully customized structure designs, and thus are neither generalizable for different sensing systems nor effective to obtain sufficient signal response. To address this issue, a cleavable DNA-protein hybrid molecular beacon was successfully engineered for signal amplified FA bioassay, via combining the unique stable structure of molecular beacon and the large molecular mass of streptavidin. Compared with single DNA strand probe or conventional molecular beacon, the DNA-protein hybrid molecular beacon exhibited a much higher FA value, which was potential to obtain high signal-background ratio in sensing process. As proof-of-principle, this novel DNA-protein hybrid molecular beacon was further applied for FA bioassay using DNAzyme-Pb(2+) as a model sensing system. This FA assay approach could selectively detect as low as 0.5nM Pb(2+) in buffer solution, and also be successful for real samples analysis with good recovery values. Compatible with most of oligonucleotide probes' designs and enzyme-based signal amplification strategies, the molecular beacon can serve as a novel signal translator to expand the application prospect of FA technology in various bioassays. Copyright © 2015 Elsevier B.V. All rights reserved.

  19. Photoactive nanocomplex formed from chlorophyll assembly on TMA-coated iron oxide nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Barbaros, Sibel; Meray, Zeynep; Tecim, Tuğba; Genç, Rükan, E-mail: rukangnc@gmail.com [Mersin University, Functional Nanomaterials Laboratory, Chemical Engineering Department, Engineering Faculty (Turkey)

    2016-07-15

    In this study, hierarchical self-assembly of photocatalytic nanodisks through non-covalent interactions between spinach-extracted chlorophyll molecules and trimethylammonium hydroxide-coated magnetic iron oxide nanoparticles was discussed. Combination of chlorophyll molecules with iron oxide nanoparticles generated an alteration in light absorption at both visible and near-IR region with accompanying enhancement in fluorescence emission. Further, photocatalytic role of resulting molecular assembly was studied by means of the photoinduced degradation of methylene blue dye under UV light and direct sun irradiation at neutral pH. In order to enhance the long-term stability of the hybrid nanocatalyst, commercially available cellulose membrane was used as a support and magnetic recovery and reusability was achieved where the nanocatalyst retained more than 90 % of its efficiency even after four cycles. This simple strategy could initiate the development of new materials for wastewater treatment including membrane-based technologies. On the other hand, their sunlight-induced photocatalytic activity could easily be conducted to dye-synthesized solar cells or their enhanced photoluminescence can provide a strong basis for future bioimaging tools.Graphical Abstract.

  20. OCO-2 chlorophyll fluorescence tracks late-summer photosynthesis decrease due to water stress at Missouri Ozark site

    Science.gov (United States)

    He, L.; Frankenberg, C.; Wood, J. D.; Sun, Y.

    2017-12-01

    Accurate estimate of the photosynthetic uptake of CO2, denoted gross primary productivity (GPP), is important to understand and quantify the carbon cycles at regional to global scales, and has implications in crop and forest management. Solar-induced chlorophyll fluorescence (SIF) retrieved from space was found to be strongly correlated with GPP and is now being used as a potential new technique to estimate photosynthetic rates at large scale. We selected the Missouri Ozark Site as a test bed, a well-characterized Eddy Covariance site in deciduous broadleaf forests, to explore the relationships of vegetation indices (VIs) and SIF with GPP and their response to environmental conditions. We find that both GPP fluxes and OCO-2 SIF decreased in late summer at the Ozark Site, directly related to water stress, evidenced by a progressive decrease in soil moisture and concomitant changer in leaf water potential. However, VIs (both NDVI and EVI) stayed stable during the same period. With a focus on this wet-dry transition period, we analyze driving factors of changes in GPP and SIF, which appear to be linearly related even in this period with little reflectance changes. We also used the Soil Canopy Observation, Photochemistry and Energy fluxes (SCOPE) model to compare observations of SIF and GPP against measurement. The primary motivation is not only to quantify the expected correlations between the GPP and SIF but also to validate performance of SCOPE in reproducing such correlations, which have not been tested against independent observations. This study clearly underlines the potential of SIF measurements to study moderate water stress and its impact on photosynthesis.

  1. Consistency Between Sun-Induced Chlorophyll Fluorescence and Gross Primary Production of Vegetation in North America

    Science.gov (United States)

    Zhang, Yao; Xiao, Xiangming; Jin, Cui; Dong, Jinwei; Zhou, Sha; Wagle, Pradeep; Joiner, Joanna; Guanter, Luis; Zhang, Yongguang; Zhang , Geli; hide

    2016-01-01

    Accurate estimation of the gross primary production (GPP) of terrestrial ecosystems is vital for a better understanding of the spatial-temporal patterns of the global carbon cycle. In this study,we estimate GPP in North America (NA) using the satellite-based Vegetation Photosynthesis Model (VPM), MODIS (Moderate Resolution Imaging Spectrometer) images at 8-day temporal and 500 meter spatial resolutions, and NCEP-NARR (National Center for Environmental Prediction-North America Regional Reanalysis) climate data. The simulated GPP (GPP (sub VPM)) agrees well with the flux tower derived GPP (GPPEC) at 39 AmeriFlux sites (155 site-years). The GPP (sub VPM) in 2010 is spatially aggregated to 0.5 by 0.5-degree grid cells and then compared with sun-induced chlorophyll fluorescence (SIF) data from Global Ozone Monitoring Instrument 2 (GOME-2), which is directly related to vegetation photosynthesis. Spatial distribution and seasonal dynamics of GPP (sub VPM) and GOME-2 SIF show good consistency. At the biome scale, GPP (sub VPM) and SIF shows strong linear relationships (R (sup 2) is greater than 0.95) and small variations in regression slopes ((4.60-5.55 grams Carbon per square meter per day) divided by (milliwatts per square meter per nanometer per square radian)). The total annual GPP (sub VPM) in NA in 2010 is approximately 13.53 petagrams Carbon per year, which accounts for approximately 11.0 percent of the global terrestrial GPP and is within the range of annual GPP estimates from six other process-based and data-driven models (11.35-22.23 petagrams Carbon per year). Among the seven models, some models did not capture the spatial pattern of GOME-2 SIF data at annual scale, especially in Midwest cropland region. The results from this study demonstrate the reliable performance of VPM at the continental scale, and the potential of SIF data being used as a benchmark to compare with GPP models.

  2. Fluorescence methods for analysis of interactions between Ca(2+) signaling, lysosomes, and endoplasmic reticulum.

    Science.gov (United States)

    Prole, David L; López-Sanjurjo, Cristina I; Tovey, Stephen C; Taylor, Colin W

    2015-01-01

    The endoplasmic reticulum (ER) is both the major source of intracellular Ca(2+) for cell signaling and the organelle that forms the most extensive contacts with the plasma membrane and other organelles. Lysosomes fulfill important roles in degrading cellular materials and in cholesterol handling, but they also contribute to Ca(2+) signaling by both releasing and sequestering Ca(2+). Interactions between ER and other Ca(2+)-transporting membranes, notably mitochondria and the plasma membrane, often occur at sites where the two membranes are closely apposed, allowing local Ca(2+) signaling between them. These interactions are often facilitated by scaffold proteins. Recent evidence suggests similar local interactions between ER and lysosomes. We describe simple fluorescence-based methods that allow the interplay between Ca(2+) signals, the ER, and lysosomes to be examined. Copyright © 2015 Elsevier Inc. All rights reserved.

  3. Fiber optical assembly for fluorescence spectrometry

    Science.gov (United States)

    Carpenter, II, Robert W.; Rubenstein, Richard; Piltch, Martin; Gray, Perry

    2010-12-07

    A system for analyzing a sample for the presence of an analyte in a sample. The system includes a sample holder for containing the sample; an excitation source, such as a laser, and at least one linear array radially disposed about the sample holder. Radiation from the excitation source is directed to the sample, and the radiation induces fluorescent light in the sample. Each linear array includes a plurality of fused silica optical fibers that receive the fluorescent light and transmits a fluorescent light signal from the first end to an optical end port of the linear array. An end port assembly having a photo-detector is optically coupled to the optical end port. The photo-detector detects the fluorescent light signal and converts the fluorescent light signal into an electrical signal.

  4. Investigations on gamma ray induced chlorophyll variegated mutants

    International Nuclear Information System (INIS)

    Datta, S.K.; Dwivedi, A.K.; Banerji, B.K.

    1995-01-01

    Considering economic importance of chlorophyll variegation in floriculture trade an attempt was made for cytological, anatomical and biochemical analysis of four Bougainvillea and Lantana depressa chlorophyll variegated mutants for better and clear understanding of origin of chlorophyll variegation. No cytological evidence could be detected for their origin. Anatomical and biochemical examinations revealed that chlorophyll variegation in these mutants were due to changes in biosynthesis pathways and time of chlorophyll synthesis in palisade and spongy mesophyll cells. (author). 7 refs., 3 figs., 3 tabs

  5. Sun-induced fluorescence - a new probe of photosynthesis: First maps from the imaging spectrometer HyPlant.

    Science.gov (United States)

    Rascher, U; Alonso, L; Burkart, A; Cilia, C; Cogliati, S; Colombo, R; Damm, A; Drusch, M; Guanter, L; Hanus, J; Hyvärinen, T; Julitta, T; Jussila, J; Kataja, K; Kokkalis, P; Kraft, S; Kraska, T; Matveeva, M; Moreno, J; Muller, O; Panigada, C; Pikl, M; Pinto, F; Prey, L; Pude, R; Rossini, M; Schickling, A; Schurr, U; Schüttemeyer, D; Verrelst, J; Zemek, F

    2015-12-01

    Variations in photosynthesis still cause substantial uncertainties in predicting photosynthetic CO2 uptake rates and monitoring plant stress. Changes in actual photosynthesis that are not related to greenness of vegetation are difficult to measure by reflectance based optical remote sensing techniques. Several activities are underway to evaluate the sun-induced fluorescence signal on the ground and on a coarse spatial scale using space-borne imaging spectrometers. Intermediate-scale observations using airborne-based imaging spectroscopy, which are critical to bridge the existing gap between small-scale field studies and global observations, are still insufficient. Here we present the first validated maps of sun-induced fluorescence in that critical, intermediate spatial resolution, employing the novel airborne imaging spectrometer HyPlant. HyPlant has an unprecedented spectral resolution, which allows for the first time quantifying sun-induced fluorescence fluxes in physical units according to the Fraunhofer Line Depth Principle that exploits solar and atmospheric absorption bands. Maps of sun-induced fluorescence show a large spatial variability between different vegetation types, which complement classical remote sensing approaches. Different crop types largely differ in emitting fluorescence that additionally changes within the seasonal cycle and thus may be related to the seasonal activation and deactivation of the photosynthetic machinery. We argue that sun-induced fluorescence emission is related to two processes: (i) the total absorbed radiation by photosynthetically active chlorophyll; and (ii) the functional status of actual photosynthesis and vegetation stress. © 2015 John Wiley & Sons Ltd.

  6. A Novel Mechanism for Chemical Sensing Based on Solvent-Fluorophore-Substrate Interaction: Highly Selective Alcohol and Water Sensor with Large Fluorescence Signal Contrast.

    Science.gov (United States)

    Chung, Kyeongwoon; Yang, Da Seul; Jung, Jaehun; Seo, Deokwon; Kwon, Min Sang; Kim, Jinsang

    2016-10-06

    Differentiation of solvents having similar physicochemical properties, such as ethanol and methanol, is an important issue of interest. However, without performing chemical analyses, discrimination between methanol and ethanol is highly challenging due to their similarity in chemical structure as well as properties. Here, we present a novel type of alcohol and water sensor based on the subtle differences in interaction among solvent analytes, fluorescent organic molecules, and a mesoporous silica gel substrate. A gradual change in the chemical structure of the fluorescent diketopyrrolopyrrole (DPP) derivatives alters their interaction with the substrate and solvent analyte, which creates a distinct intermolecular aggregation of the DPP derivatives on the silica gel substrate depending on the solvent environment and produces a change in the fluorescence color and intensity as a sensory signal. The devised sensor device, which is fabricated with simple drop-casting of the DPP derivative solutions onto a silica gel substrate, exhibited a completely reversible fluorescence signal change with large fluorescence signal contrast, which allows selective solvent detection by simple optical observation with the naked eye under UV light. Superior selectivity of the alcohol and water sensor system, which can clearly distinguish among ethanol, methanol, ethylene glycol, and water, is demonstrated.

  7. Spatial-temporal consistency between gross primary productivity and solar-induced chlorophyll fluorescence of vegetation in China during 2007-2014

    Science.gov (United States)

    Ma, J.; Xiao, X.; Zhang, Y.; Chen, B.; Zhao, B.

    2017-12-01

    Great significance exists in accurately estimating spatial-temporal patterns of gross primary production (GPP) because of its important role in global carbon cycle. Satellite-based light use efficiency (LUE) models are regarded as an efficient tool in simulating spatially time-sires GPP. However, the estimation of the accuracy of GPP simulations from LUE at both spatial and temporal scales is still a challenging work. In this study, we simulated GPP of vegetation in China during 2007-2014 using a LUE model (Vegetation Photosynthesis Model, VPM) based on MODIS (moderate-resolution imaging spectroradiometer) images of 8-day temporal and 500-m spatial resolutions and NCEP (National Center for Environmental Prediction) climate data. Global Ozone Monitoring Instrument 2 (GOME-2) solar-induced chlorophyll fluorescence (SIF) data were used to compare with VPM simulated GPP (GPPVPM) temporally and spatially using linear correlation analysis. Significant positive linear correlations exist between monthly GPPVPM and SIF data over both single year (2010) and multiple years (2007-2014) in China. Annual GPPVPM is significantly positive correlated with SIF (R2>0.43) spatially for all years during 2007-2014 and all seasons in 2010 (R2>0.37). GPP dynamic trends is high spatial-temporal heterogeneous in China during 2007-2014. The results of this study indicate that GPPVPM is temporally and spatially in line with SIF data, and space-borne SIF data have great potential in validating and parameterizing GPP estimation of LUE-based models.

  8. Identification of Genes Associated with Chlorophyll Accumulation in Flower Petals

    Science.gov (United States)

    Ohmiya, Akemi; Hirashima, Masumi; Yagi, Masafumi; Tanase, Koji; Yamamizo, Chihiro

    2014-01-01

    Plants have an ability to prevent chlorophyll accumulation, which would mask the bright flower color, in their petals. In contrast, leaves contain substantial amounts of chlorophyll, as it is essential for photosynthesis. The mechanisms of organ-specific chlorophyll accumulation are unknown. To identify factors that determine the chlorophyll content in petals, we compared the expression of genes related to chlorophyll metabolism in different stages of non-green (red and white) petals (very low chlorophyll content), pale-green petals (low chlorophyll content), and leaves (high chlorophyll content) of carnation (Dianthus caryophyllus L.). The expression of many genes encoding chlorophyll biosynthesis enzymes, in particular Mg-chelatase, was lower in non-green petals than in leaves. Non-green petals also showed higher expression of genes involved in chlorophyll degradation, including STAY-GREEN gene and pheophytinase. These data suggest that the absence of chlorophylls in carnation petals may be caused by the low rate of chlorophyll biosynthesis and high rate of degradation. Similar results were obtained by the analysis of Arabidopsis microarray data. In carnation, most genes related to chlorophyll biosynthesis were expressed at similar levels in pale-green petals and leaves, whereas the expression of chlorophyll catabolic genes was higher in pale-green petals than in leaves. Therefore, we hypothesize that the difference in chlorophyll content between non-green and pale-green petals is due to different levels of chlorophyll biosynthesis. Our study provides a basis for future molecular and genetic studies on organ-specific chlorophyll accumulation. PMID:25470367

  9. Subcellular pigment distribution is altered under far-red light acclimation in cyanobacteria that contain chlorophyll f.

    Science.gov (United States)

    Majumder, Erica L-W; Wolf, Benjamin M; Liu, Haijun; Berg, R Howard; Timlin, Jerilyn A; Chen, Min; Blankenship, Robert E

    2017-11-01

    Far-Red Light (FRL) acclimation is a process that has been observed in cyanobacteria and algae that can grow solely on light above 700 nm. The acclimation to FRL results in rearrangement and synthesis of new pigments and pigment-protein complexes. In this study, cyanobacteria containing chlorophyll f, Synechococcus sp. PCC 7335 and Halomicronema hongdechloris, were imaged as live cells with confocal microscopy. H. hongdechloris was further studied with hyperspectral confocal fluorescence microscopy (HCFM) and freeze-substituted thin-section transmission electron microscopy (TEM). Under FRL, phycocyanin-containing complexes and chlorophyll-containing complexes were determined to be physically separated and the synthesis of red-form phycobilisome and Chl f was increased. The timing of these responses was observed. The heterogeneity and eco-physiological response of the cells was noted. Additionally, a gliding motility for H. hongdechloris is reported.

  10. Early quantitative method for measuring germination in non-green spores of Dryopteris paleacea using an epifluorescence-microscope technique

    Science.gov (United States)

    Scheuerlein, R.; Wayne, R.; Roux, S. J.

    1988-01-01

    A method is described to determine germination by blue-light excited red fluorescence in the positively photoblastic spores of Dryopteris paleacea Sw. This fluorescence is due to chlorophyll as evidenced from 1) a fluorescence-emission spectrum in vivo, where a bright fluorescence around 675 nm is obtained only in red light (R)-irradiated spores and 2) in vitro measurements with acetone extracts prepared from homogenized spores. Significant amounts of chlorophyll can be found only in R-treated spores; this chlorophyll exhibits an emission band around 668 nm, when irradiated with 430 nm light at 21 degrees C. Compared to other criteria for germination, such as swelling of the cell, coat splitting, greening, and rhizoid formation, which require longer periods after induction for their expression, chlorophyll fluorescence can be used to quantify germination after two days. This result is confirmed by fluence-response curves for R-induced spore germination; the same relationship between applied R and germination is obtained by the evaluation with the epifluorescence method 2 days after the light treatment as compared with the evaluation with bright-field microscopy 5 days after the inducing R. Using this technique we show for the first time that Ca2+ contributes to the signal-transduction chain in phytochrome-mediated chlorophyll synthesis in spores of Dryopteris paleacea.

  11. High-contrast fluorescence imaging based on the polarization dependence of the fluorescence enhancement using an optical interference mirror slide.

    Science.gov (United States)

    Yasuda, Mitsuru; Akimoto, Takuo

    2015-01-01

    High-contrast fluorescence imaging using an optical interference mirror (OIM) slide that enhances the fluorescence from a fluorophore located on top of the OIM surface is reported. To enhance the fluorescence and reduce the background light of the OIM, transverse-electric-polarized excitation light was used as incident light, and the transverse-magnetic-polarized fluorescence signal was detected. As a result, an approximate 100-fold improvement in the signal-to-noise ratio was achieved through a 13-fold enhancement of the fluorescence signal and an 8-fold reduction of the background light.

  12. The dependence of the fluorescent parameters of the Caspiy microseaweed from the anthropogenous pollution

    Directory of Open Access Journals (Sweden)

    M. Yu. Aliyeva

    2008-01-01

    Full Text Available Anthropogenic pollution becomes the essential factor, reducing photosynthetic efficiency of microalgae of Caspian sea. Methods of registration of chlorophyll fluorescence can be used for detection of toxic action of heavy metals on microalgae.

  13. Indian Ocean Dipole and El Niño/Southern Oscillation impacts on regional chlorophyll anomalies in the Indian Ocean

    Directory of Open Access Journals (Sweden)

    J. C. Currie

    2013-10-01

    Full Text Available The Indian Ocean Dipole (IOD and the El Niño/Southern Oscillation (ENSO are independent climate modes, which frequently co-occur, driving significant interannual changes within the Indian Ocean. We use a four-decade hindcast from a coupled biophysical ocean general circulation model, to disentangle patterns of chlorophyll anomalies driven by these two climate modes. Comparisons with remotely sensed records show that the simulation competently reproduces the chlorophyll seasonal cycle, as well as open-ocean anomalies during the 1997/1998 ENSO and IOD event. Results suggest that anomalous surface and euphotic-layer chlorophyll blooms in the eastern equatorial Indian Ocean in fall, and southern Bay of Bengal in winter, are primarily related to IOD forcing. A negative influence of IOD on chlorophyll concentrations is shown in a region around the southern tip of India in fall. IOD also depresses depth-integrated chlorophyll in the 5–10° S thermocline ridge region, yet the signal is negligible in surface chlorophyll. The only investigated region where ENSO has a greater influence on chlorophyll than does IOD, is in the Somalia upwelling region, where it causes a decrease in fall and winter chlorophyll by reducing local upwelling winds. Yet unlike most other regions examined, the combined explanatory power of IOD and ENSO in predicting depth-integrated chlorophyll anomalies is relatively low in this region, suggestive that other drivers are important there. We show that the chlorophyll impact of climate indices is frequently asymmetric, with a general tendency for larger positive than negative chlorophyll anomalies. Our results suggest that ENSO and IOD cause significant and predictable regional re-organisation of chlorophyll via their influence on near-surface oceanography. Resolving the details of these effects should improve our understanding, and eventually gain predictability, of interannual changes in Indian Ocean productivity, fisheries

  14. Sun-induced Chlorophyll fluorescence and PRI improve remote sensing GPP estimates under varying nutrient availability in a typical Mediterranean savanna ecosystem

    Science.gov (United States)

    Perez-Priego, O.; Guan, J.; Rossini, M.; Fava, F.; Wutzler, T.; Moreno, G.; Carvalhais, N.; Carrara, A.; Kolle, O.; Julitta, T.; Schrumpf, M.; Reichstein, M.; Migliavacca, M.

    2015-07-01

    This study investigates the performances of different optical indices to estimate gross primary production (GPP) of herbaceous stratum in a Mediterranean savanna with different Nitrogen (N) and Phosphorous (P) availability. Sun-induced chlorophyll Fluorescence yield computed at 760 nm (Fy760), scaled-photochemical reflectance index (sPRI), MERIS terrestrial-chlorophyll index (MTCI) and Normalized difference vegetation index (NDVI) were computed from near-surface field spectroscopy measurements collected using high spectral resolution spectrometers covering the visible near-infrared regions. GPP was measured using canopy-chambers on the same locations sampled by the spectrometers. We hypothesized that light-use efficiency (LUE) models driven by remote sensing quantities (RSM) can better track changes in GPP caused by nutrient supplies compared to those driven exclusively by meteorological data (MM). Particularly, we compared the performances of different RSM formulations - relying on the use of Fy760 or sPRI as proxy for LUE and NDVI or MTCI as fraction of absorbed photosynthetically active radiation (fAPAR) - with those of classical MM. Results showed significantly higher GPP in the N fertilized experimental plots during the growing period. These differences in GPP disappeared in the drying period when senescence effects masked out potential differences due to plant N content. Consequently, although MTCI was tightly related to plant N content (r2 = 0.86, p < 0.01), it was poorly related to GPP (r2 = 0.45, p < 0.05). On the contrary sPRI and Fy760 correlated well with GPP during the whole measurement period. Results revealed that the relationship between GPP and Fy760 is not unique across treatments but it is affected by N availability. Results from a cross validation analysis showed that MM (AICcv = 127, MEcv = 0.879) outperformed RSM (AICcv = 140, MEcv = 0.8737) when soil moisture was used to constrain the seasonal dynamic of LUE. However, residual analyses

  15. Chlorophyll_Master

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set included chlorophyll for each subregion in the study (Georges Bank, Gulf of Maine, Southern New England, Middle Atlantic Bight) . The data came from...

  16. Chlorophyll loss associated with heat-induced senescence in bentgrass.

    Science.gov (United States)

    Jespersen, David; Zhang, Jing; Huang, Bingru

    2016-08-01

    Heat stress-induced leaf senescence is characterized by the loss of chlorophyll from leaf tissues. The objectives of this study were to examine genetic variations in the level of heat-induced leaf senescence in hybrids of colonial (Agrostis capillaris)×creeping bentgrass (Agrostis stolonifera) contrasting in heat tolerance, and determine whether loss of leaf chlorophyll during heat-induced leaf senescence was due to suppressed chlorophyll synthesis and/or accelerated chlorophyll degradation in the cool-season perennial grass species. Plants of two hybrid backcross genotypes ('ColxCB169' and 'ColxCB190') were exposed to heat stress (38/33°C, day/night) for 28 d in growth chambers. The analysis of turf quality, membrane stability, photochemical efficiency, and chlorophyll content demonstrated significant variations in the level of leaf senescence induced by heat stress between the two genotypes, with ColXCB169 exhibiting a lesser degree of decline in chlorophyll content, photochemical efficiency and membrane stability than ColXCB190. The assays of enzymatic activity or gene expression of several major chlorophyll-synthesizing (porphobilinogen deaminase, Mg-chelatase, protochlorophyllide-reductase) and chlorophyll-degrading enzymes (chlorophyllase, pheophytinase, and chlorophyll-degrading peroxidase) indicated heat-induced decline in leaf chlorophyll content was mainly due to accelerated chlorophyll degradation, as manifested by increased gene expression levels of chlorophyllase and pheophytinase, and the activity of pheophytinase (PPH), while chlorophyll-synthesizing genes and enzymatic activities were not differentially altered by heat stress in the two genotypes. The analysis of heat-induced leaf senescence of pph mutants of Arabidopsis further confirmed that PPH could be one enzymes that plays key roles in regulating heat-accelerated chlorophyll degradation. Further research on enzymes responsible in part for the loss of chlorophyll during heat

  17. A set of enhanced green fluorescent protein concatemers for quantitative determination of nuclear localization signal strength.

    Science.gov (United States)

    Böhm, Jennifer; Thavaraja, Ramya; Giehler, Susanne; Nalaskowski, Marcus M

    2017-09-15

    Regulated transport of proteins between nucleus and cytoplasm is an important process in the eukaryotic cell. In most cases, active nucleo-cytoplasmic protein transport is mediated by nuclear localization signal (NLS) and/or nuclear export signal (NES) motifs. In this study, we developed a set of vectors expressing enhanced GFP (EGFP) concatemers ranging from 2 to 12 subunits (2xEGFP to 12xEGFP) for analysis of NLS strength. As shown by in gel GFP fluorescence analysis and αGFP Western blotting, EGFP concatemers are expressed as fluorescent full-length proteins in eukaryotic cells. As expected, nuclear localization of concatemeric EGFPs decreases with increasing molecular weight. By oligonucleotide ligation this set of EGFP concatemers can be easily fused to NLS motifs. After determination of intracellular localization of EGFP concatemers alone and fused to different NLS motifs we calculated the size of a hypothetic EGFP concatemer showing a defined distribution of EGFP fluorescence between nucleus and cytoplasm (n/c ratio = 2). Clear differences of the size of the hypothetic EGFP concatemer depending on the fused NLS motif were observed. Therefore, we propose to use the size of this hypothetic concatemer as quantitative indicator for comparing strength of different NLS motifs. Copyright © 2017 Elsevier Inc. All rights reserved.

  18. A novel polymer probe for Zn(II) detection with ratiometric fluorescence signal

    Science.gov (United States)

    Diao, Haipeng; Guo, Lixia; Liu, Wen; Feng, Liheng

    2018-05-01

    A conjugated polymer probe comprised of fluorene, quinolone and benzothiazole units was designed and synthesized by the Suzuki coupling reaction. Through the studies of photophysical and thermal properties, the polymer displays blue-emitting feature and good thermal stability. A ratiometric fluorescence signal of the probe for Zn(II) was observed in ethanol with a new emission peak at 555 nm. The probe possesses a high selectivity and sensitivity for Zn(II) during familiar metal ions in ethanol. The detection limit of the probe for Zn (II) is up to 10-8 mol/L. The electron distributions of the polymer before and after bonding with Zn (II) were investigated by the Gaussian 09 software, which agreed with the experimental results. Noticeably, based on the color property of the probe with Zn(II), a series of color test paper were developed for visual detecting Zn(II) ions. This work helps to provide a platform or pattern for the development of polymer fluorescence probe in the chemosensor field.

  19. Laser induced fluorescence technique for detecting organic matter in East China Sea

    Science.gov (United States)

    Chen, Peng; Wang, Tianyu; Pan, Delu; Huang, Haiqing

    2017-10-01

    A laser induced fluorescence (LIF) technique for fast diagnosing chromophoric dissolved organic matter (CDOM) in water is discussed. We have developed a new field-portable laser fluorometer for rapid fluorescence measurements. In addtion, the fluorescence spectral characteristics of fluorescent constituents (e.g., CDOM, chlorophyll-a) were analyzed with a spectral deconvolution method of bi-Gaussian peak function. In situ measurements by the LIF technique compared well with values measured by conventional spectrophotometer method in laboratory. A significant correlation (R2 = 0.93) was observed between fluorescence by the technique and absorption by laboratory spectrophotometer. Influence of temperature variation on LIF measurement was investigated in lab and a temperature coefficient was deduced for fluorescence correction. Distributions of CDOM fluorescence measured using this technique in the East China Sea coast were presented. The in situ result demonstrated the utility of the LIF technique for rapid detecting dissolved organic matter.

  20. Isolation of chlorophyll a from spinach leaves

    Directory of Open Access Journals (Sweden)

    E.D. Dikio

    2008-08-01

    Full Text Available An efficient method for separating chlorophyll a from spinach leaves by column chromatography and solvent extraction techniques has been developed. The purity and identity of the chlorophyll a have been confirmed by UV-Vis, IR and mass spectrometry. Yields from 100 g of freeze-dried spinach were 23 – 24 mg of chlorophyll a.

  1. Quantifying mangrove chlorophyll from high spatial resolution imagery

    NARCIS (Netherlands)

    Heenkenda, M.K.; Joyce, K.E.; Maier, S.W.; Bruin, de S.

    2015-01-01

    Lower than expected chlorophyll concentration of a plant can directly limit photosynthetic activity, and resultant primary production. Low chlorophyll concentration may also indicate plant physiological stress. Compared to other terrestrial vegetation, mangrove chlorophyll variations are poorly

  2. Multispectral open-air intraoperative fluorescence imaging.

    Science.gov (United States)

    Behrooz, Ali; Waterman, Peter; Vasquez, Kristine O; Meganck, Jeff; Peterson, Jeffrey D; Faqir, Ilias; Kempner, Joshua

    2017-08-01

    Intraoperative fluorescence imaging informs decisions regarding surgical margins by detecting and localizing signals from fluorescent reporters, labeling targets such as malignant tissues. This guidance reduces the likelihood of undetected malignant tissue remaining after resection, eliminating the need for additional treatment or surgery. The primary challenges in performing open-air intraoperative fluorescence imaging come from the weak intensity of the fluorescence signal in the presence of strong surgical and ambient illumination, and the auto-fluorescence of non-target components, such as tissue, especially in the visible spectral window (400-650 nm). In this work, a multispectral open-air fluorescence imaging system is presented for translational image-guided intraoperative applications, which overcomes these challenges. The system is capable of imaging weak fluorescence signals with nanomolar sensitivity in the presence of surgical illumination. This is done using synchronized fluorescence excitation and image acquisition with real-time background subtraction. Additionally, the system uses a liquid crystal tunable filter for acquisition of multispectral images that are used to spectrally unmix target fluorescence from non-target auto-fluorescence. Results are validated by preclinical studies on murine models and translational canine oncology models.

  3. On the chlorophill a fluorescence yield in chloroplasts upon excitation with twin turnover flashes (TTF) and high frequency flash trains

    NARCIS (Netherlands)

    Vredenberg, W.J.; Prasil, O.; Durchan, M.

    2007-01-01

    Chlorophyll fluorescence is routinely taken as a quantifiable measure of the redox state of the primary quinone acceptor QA of PSII. The variable fluorescence in thylakoids increases in a single turnover flash (STF) from its low dark level F o towards a maximum F mSTF when QA becomes reduced. We

  4. Red and Far-Red Solar-Induced Chlorophyll Fluorescence Observations in the Tropical Rain Forest of Costa Rica

    Science.gov (United States)

    Stutz, J.; Grossmann, K.; Seibt, U.; Dierick, D.; Magney, T. S.; Frankenberg, C.

    2017-12-01

    Solar-Induced Chlorophyll Fluorescence (SIF) is a powerful proxy for photosynthetic activity. SIF can be measured using remote sensing from the leaf to the global scale. However, the relationship between SIF, photosynthetic efficiencies, Gross Primary Productivity (GPP), and their response to environmental stress conditions remain poorly constrained. The impact of canopy radiative transfer and viewing geometry at the canopy scale also requires further study. In addition, there is an urgent need for the validation of space-borne SIF measurements, especially above the tropical rain forest where ground observations at the canopy scale are sparse. Here we present observations of SIF in the red and far-red wavelength range, as well various vegetation indices (NDVI, PRI, EVI), made by a novel ground-based spectrometer system, PhotoSpec, at La Selva Biological Station, Costa Rica. Measurements began in March 2017 and have continued ever since. PhotoSpec uses a narrow (0.7 degrees) field-of-view for the simultaneous co-aligned observations of all parameters at a time resolution of 30 seconds. The 2D scanning telescope unit of PhotoSpec was used for regular surveys of around 20 tree species, 2D-raster on canopies of individual trees, as well as elevation survey scans. SIF retrievals were performed using the in-filling of Fraunhofer lines, which allows the accurate observation of SIF under sunny as well as frequent cloudy conditions. The seasonal changes of SIF at La Selva, as well as the red / far-red SIF ratio, for different tree species are presented. 2D-raster scans allow an assessment of the representativeness of narrow field-of-view observations. We will also compare the PhotoSpec data with coincident satellite observations.

  5. Radiation induced chlorophyll mutations in rice

    International Nuclear Information System (INIS)

    Bari, G.; Mustafa, G.; Soomro, A.M.; Baloch, A.W.

    1985-01-01

    Air dried grains of four local varieties of rice were treated with gamma-rays and fast neutrons for determining their mutagenic effectiveness through the occurence of chlorophyll mutations. Fast neutrons were more effective in inducing chlorophyll mutations and the rice variety Basmati 370 produced maximum number of mutations followed by varieties Sonahri Sugdasi, Jajai 77 and Sada Gulab. The highest frequency of chlorophyll mutations was that of albina types followed by striata types. The xantha, viridis and tigrina types of mutations were less frequent. (authors)

  6. Quantitative analysis of phosphoinositide 3-kinase (PI3K) signaling using live-cell total internal reflection fluorescence (TIRF) microscopy.

    Science.gov (United States)

    Johnson, Heath E; Haugh, Jason M

    2013-12-02

    This unit focuses on the use of total internal reflection fluorescence (TIRF) microscopy and image analysis methods to study the dynamics of signal transduction mediated by class I phosphoinositide 3-kinases (PI3Ks) in mammalian cells. The first four protocols cover live-cell imaging experiments, image acquisition parameters, and basic image processing and segmentation. These methods are generally applicable to live-cell TIRF experiments. The remaining protocols outline more advanced image analysis methods, which were developed in our laboratory for the purpose of characterizing the spatiotemporal dynamics of PI3K signaling. These methods may be extended to analyze other cellular processes monitored using fluorescent biosensors. Copyright © 2013 John Wiley & Sons, Inc.

  7. New approaches to the measurement of chlorophyll, related pigments and productivity in the sea

    Science.gov (United States)

    Booth, C. R.; Keifer, D. A.

    1989-01-01

    In the 1984 SBIR Call for Proposals, NASA solicited new methods to measure primary production and chlorophyll in the ocean. Biospherical Instruments Inc. responded to this call with a proposal first to study a variety of approaches to this problem. A second phase of research was then funded to pursue instrumentation to measure the sunlight stimulated naturally occurring fluorescence of chlorophyll in marine phytoplankton. The monitoring of global productivity, global fisheries resources, application of above surface-to-underwater optical communications systems, submarine detection applications, correlation, and calibration of remote sensing systems are but some of the reasons for developing inexpensive sensors to measure chlorophyll and productivity. Normally, productivity measurements are manpower and cost intensive and, with the exception of a very few expensive multiship research experiments, provide no contemporaneous data. We feel that the patented, simple sensors that we have designed will provide a cost effective method for large scale, synoptic, optical measurements in the ocean. This document is the final project report for a NASA sponsored SBIR Phase 2 effort to develop new methods for the measurements of primary production in the ocean. This project has been successfully completed, a U.S. patent was issued covering the methodology and sensors, and the first production run of instrumentation developed under this contract has sold out and been delivered.

  8. Phytoplankton chlorophyll

    NARCIS (Netherlands)

    van de Poll, W.H.; Kulk, G.; Timmermans, K.R.; Brussaard, C.P.D.; van der Woerd, H.J.; Kehoe, M.J.; Mojica, K.D.A.; Visser, R.J.W.; Rozema, P.D.; Buma, A.G.J.

    2013-01-01

    Relationships between sea surface temperature (SST, > 10 m) and vertical density stratification, nutrient concentrations, and phytoplankton biomass, composition, and chlorophyll a (Chl a) specific absorption were assessed in spring and summer from latitudes 29 to 63 degrees N in the northeast

  9. Detection of mechanical and disease stresses in citrus plants by fluorescence spectroscopy

    Science.gov (United States)

    Belasque, J., Jr.; Gasparoto, M. C. G.; Marcassa, L. G.

    2008-04-01

    We have investigated the detection of mechanical and disease stresses in citrus plants (Citrus limonia [L.] Osbeck) using laser-induced fluorescence spectroscopy. Due to its economic importance we have chosen to investigate the citrus canker disease, which is caused by the Xanthomonas axonopodis pv. citri bacteria. Mechanical stress was also studied because it plays an important role in the plant's infection by such bacteria. A laser-induced fluorescence spectroscopy system, composed of a spectrometer and a 532 nm10 mW excitation laser was used to perform fluorescence spectroscopy. The ratio of two chlorophyll fluorescence bands allows us to detect and discriminate between mechanical and disease stresses. This ability to discriminate may have an important application in the field to detect citrus canker infected trees.

  10. Diurnal and Directional Responses of Chlorophyll Fluorescence and the PRI in a Cornfield

    Science.gov (United States)

    Middleton, Elizabeth; Cheng, Y. B.; Corp, L.; Campbell, P.; Kustas, W.

    2010-01-01

    Determining the health and vigor of vegetation using high spectral resolution remote sensing is an important goal which has application to monitoring agriculture and ecosystem productivity and carbon exchange. Two spectral indices used to assess whether vegetation is performing near-optimally or exhibiting symptoms of environmental stress (e.g., drought or nutrient deficiency, non-optimal temperatures, etc.) are the Photochemical Reflectance Index (PRI) and solar-induced red and far-red Chlorophyll Fluorescence (Fs). Both the PRI and Fs capture the dynamics of photoprotection mechanisms within green foliage: the PRI is based on the association of the reflected radiation in the green spectrum with the xanthophyll cycle, whereas Fs measures the emitted radiation in the red and far-red spectrum. Fs was determined from retrievals in the atmospheric oxygen absorption features centered at 688 and 760 nm using a modified Fraunhofer Line Depth (FLD) method. We previously demonstrated diurnal and seasonal PRI differences for sunlit vs. shaded foliage in a conifer forest canopy, as expressed in the hotspot and darkspot of the Bidirectional Reflectance Function (BRF). In a USDA-ARS experimental field site located in Beltsville, MD, USA, measurements were acquired over a corn crop from a nadir view in 2008 with an ASD FieldSpec Pro (Analytical Spectral Devices, Inc., Boulder, CO, USA) to study the behavior of the PRI for sunlit and shaded foliage as captured in reflectance variations associated with the BRF, in a I m tall canopy in the vegetative growth stage. Those observations were compared to simulations obtained from two radiative transfer models. Measurements were then acquired to examine whether the PRI and Fs were influenced by view zenith and azimuth geometries at different times of day. Those measurements were made in 2010 with the Ocean Optics USB4000 Miniature Fiber Optic Spectrometer (Ocean Optics Inc., Dunedin, Florida, USA) at several times during the day on

  11. Estimation of vegetation photosynthetic capacity from space-based measurements of chlorophyll fluorescence for terrestrial biosphere models.

    Science.gov (United States)

    Zhang, Yongguang; Guanter, Luis; Berry, Joseph A; Joiner, Joanna; van der Tol, Christiaan; Huete, Alfredo; Gitelson, Anatoly; Voigt, Maximilian; Köhler, Philipp

    2014-12-01

    Photosynthesis simulations by terrestrial biosphere models are usually based on the Farquhar's model, in which the maximum rate of carboxylation (Vcmax ) is a key control parameter of photosynthetic capacity. Even though Vcmax is known to vary substantially in space and time in response to environmental controls, it is typically parameterized in models with tabulated values associated to plant functional types. Remote sensing can be used to produce a spatially continuous and temporally resolved view on photosynthetic efficiency, but traditional vegetation observations based on spectral reflectance lack a direct link to plant photochemical processes. Alternatively, recent space-borne measurements of sun-induced chlorophyll fluorescence (SIF) can offer an observational constraint on photosynthesis simulations. Here, we show that top-of-canopy SIF measurements from space are sensitive to Vcmax at the ecosystem level, and present an approach to invert Vcmax from SIF data. We use the Soil-Canopy Observation of Photosynthesis and Energy (SCOPE) balance model to derive empirical relationships between seasonal Vcmax and SIF which are used to solve the inverse problem. We evaluate our Vcmax estimation method at six agricultural flux tower sites in the midwestern US using spaced-based SIF retrievals. Our Vcmax estimates agree well with literature values for corn and soybean plants (average values of 37 and 101 μmol m(-2)  s(-1) , respectively) and show plausible seasonal patterns. The effect of the updated seasonally varying Vcmax parameterization on simulated gross primary productivity (GPP) is tested by comparing to simulations with fixed Vcmax values. Validation against flux tower observations demonstrate that simulations of GPP and light use efficiency improve significantly when our time-resolved Vcmax estimates from SIF are used, with R(2) for GPP comparisons increasing from 0.85 to 0.93, and for light use efficiency from 0.44 to 0.83. Our results support the use of

  12. Tracking diurnal changes of photosynthesis and evapotranspiration using fluorescence, gas exchange and hyperspectral remote sensing measurements

    Science.gov (United States)

    Wang, S.; Zhang, L.; Guanter, L.; Huang, C.

    2017-12-01

    Photosynthesis and evapotranspiration (ET) are the two most important activities of vegetation and make a great contribution to carbon, water and energy exchanges. Remote sensing provides opportunities for monitoring these processes across time and space. This study focuses on tracking diurnal changes of photosynthesis and evapotranspiration over soybean using multiple measurement techniques. Diurnal changes of both remote sensing-based indicators, including active and passive chlorophyll fluorescence and biophysical-related parameters, including photosynthesis rate (photo) and leaf stomatal conductance (cond), were observed. Results showed that both leaf-level steady-state fluorescence (Fs) and canopy-level solar-induced chlorophyll fluorescence were linearly correlated to photosynthetically active radiation (PAR) during the daytime. A double-peak diurnal change curve was observed for leaf-level photo and cond but not for Fs or SIF. Photo and cond showed a strong nonlinear (second-order) correlation, indicating that photosynthesis, which might be remotely sensed by SIF, has the opportunity to track short-term changes of ET. Results presented in this report will be helpful for better understanding the relationship between remote-sensing-based indices and vegetation's biophysical processes.

  13. Leaf gas exchange, chlorophyll fluorescence and pigment indexes of Eugenia uniflora L. in response to changes in light intensity and soil flooding.

    Science.gov (United States)

    Mielke, Marcelo S; Schaffer, Bruce

    2010-01-01

    The interactive effects of changing light intensity and soil flooding on the photosynthetic performance of Eugenia uniflora L. (Myrtaceae) seedlings in containers were examined. Two hypotheses were tested: (i) the photosynthetic apparatus of shade-adapted leaves can be rapidly acclimated to high light after transfer from shade to full sun, and (ii) photosynthetic acclimation to changing light intensity may be influenced by soil flooding. Seedlings cultivated in a shade house (40% of full sun, approximately 12 mol m(-)(2) day(-)(1)) for 6 months were transferred to full sun (20-40 mol m(-2) day(-1)) or shade (30% of full sun, approximately 8 mol m(-2) day(-1)) and subjected to soil flooding for 23 days or not flooded. Chlorophyll content index (CCI), chlorophyll fluorescence, leaf weight per area (LWA), photosynthetic light-response curves and leaf reflectance indexes were measured during soil flooding and after plants were unflooded. The CCI values increased throughout the experiment in leaves of shaded plants and decreased in leaves of plants transferred to full sun. There were no significant interactions between light intensity and flooding treatments for most of the variables analyzed, with the exception of Fv/Fm 22 days after plants were flooded and 5 days after flooded plants were unflooded. The light environment significantly affected LWA, and light environment and soil flooding significantly affected the light-saturated gross CO(2) assimilation rate expressed on area and dry weight bases (A(max-area) and A(max-wt), respectively), stomatal conductance of water vapor (g(ssat)) and intrinsic water use efficiency (A/g(s)). Five days after flooded plants were unflooded, the normalized difference vegetation index (NDVI) and the scaled photochemical reflectance index (sPRI) were significantly higher in shade than in sun leaves. Thirty days after transferring plants from the shade house to the light treatment, LWA was 30% higher in sun than in shade leaves, and A

  14. Screening by coral green fluorescent protein (GFP)-like chromoproteins supports a role in photoprotection of zooxanthellae

    Science.gov (United States)

    Smith, E. G.; D'Angelo, C.; Salih, A.; Wiedenmann, J.

    2013-06-01

    Green fluorescent protein (GFP)-like pigments are responsible for the vivid colouration of many reef-building corals and have been proposed to act as photoprotectants. Their role remains controversial because the functional mechanism has not been elucidated. We provide direct evidence to support a photoprotective role of the non-fluorescent chromoproteins (CPs) that form a biochemically and photophysically distinct group of GFP-like proteins. Based on observations of Acropora nobilis from the Great Barrier Reef, we explored the photoprotective role of CPs by analysing five coral species under controlled conditions. In vitro and in hospite analyses of chlorophyll excitation demonstrate that screening by CPs leads to a reduction in chlorophyll excitation corresponding to the spectral properties of the specific CPs present in the coral tissues. Between 562 and 586 nm, the CPs maximal absorption range, there was an up to 50 % reduction of chlorophyll excitation. The screening was consistent for established and regenerating tissue and amongst symbiont clades A, C and D. Moreover, among two differently pigmented morphs of Acropora valida grown under identical light conditions and hosting subclade type C3 symbionts, high CP expression correlated with reduced photodamage under acute light stress.

  15. Calibrations between chlorophyll meter values and chlorophyll contents vary as the result of differences in leaf structure

    Science.gov (United States)

    In order to relate leaf chlorophyll meter values with total leaf chlorophyll contents (µg cm-2), calibration equations are established with measured data on leaves. Many studies have documented differences in calibration equations using different species and using different growing conditions for th...

  16. Chlorophyll degradation in the gut of generalist and specialist Lepidopteran caterpillars.

    Science.gov (United States)

    Badgaa, Amarsanaa; Jia, Aiqun; Ploss, Kerstin; Boland, Wilhelm

    2014-12-01

    Plant feeding herbivores excrete most of the ingested chlorophyll (Chl) as partly degraded derivatives lacking the phytol side chain and the central magnesium ion. An ecological role of digested and degraded Chls in the interactions between insects, their food plant and other insects has been described recently. To gain more information on common degradation patterns in plant-feeding insects, the orals secretions and frass of five Lepidopteran caterpillars covering generalists and specialists, namely Spodoptera littoralis, Spodoptera eridania, Heliothis virescens, Helicoverpa armigera, Manduca sexta, and, for comparison, of the leaf beetle larva Chrysomela lapponica were analyzed for chlorophyll catabolites. The major degradation products were determined as pheohorbide a/b and pyropheophorbide a/b by using LC-MS, LC-NMR, UV, and fluorescence spectrometry. The compounds were not present in fresh leaves of the food plants (Phaseolus lunatus, Nicotiana tabacum). The catabolite spectrum in generalists and specialists was qualitatively similar and could be attributed to the action of gut proteins and the strongly alkaline milieu in the digestive tract. Due to the anaerobic environment of the larval gut, the tetrapyrrole core of the Chl catabolites was not cleaved. Substantial amounts of Chl a/b metabolites were strongly complexed by a protein in the mid-gut.

  17. Utilização de fluorescência de clorofila na separação de sementes esverdeadas de soja

    OpenAIRE

    CICERO, Silvio Moure; SCHOOR, Rob Van Der; JALINK, Henk

    2009-01-01

    The occurrence of green seeded soybeans [Glycine max (L.) Merrill] is a problem closely related to unfavorable climatic conditions, mainly drought, that occurs during the final stages of seed maturation. This problem causes serious losses to soybean seed quality in Brazil. In these seeds, chlorophyll is not properly degraded during maturation, drastically reducing seed quality. Using the chlorophyll fluorescence technique, it is possible to remove green seeds from the seed lot, improving seed...

  18. Spectroscopic evidence of xanthine compounds fluorescence quenching effect on water-soluble porphyrins

    Science.gov (United States)

    Makarska-Bialokoz, Magdalena

    2015-02-01

    The formation of π-stacked complexes between water-soluble porphyrins: 4,4‧,4″,4″‧-(21H,23H-porphine-5,10,15,20-tetrayl)tetrakis-(benzoic acid) (H2TCPP), 5,10,15,20-tetrakis(4-sulfonatophenyl)-21H,23H-porphine (H2TPPS4), 5,10,15,20-tetrakis[4-(trimethylammonio)phenyl]-21H,23H-porphine tetra-p-tosylate (H2TTMePP), 5,10,15,20-tetrakis(1-methyl-4-pyridyl)-21H,23H-porphine tetra-p-tosylate (H2TMePyP), the Cu(II) complexes of H2TTMePP and H2TMePyP, as well as chlorophyll a with xanthine, theophylline (1,3-dimethylxanthine) and theobromine (3,7-dimethylxanthine) has been studied analysing their absorption and steady-state fluorescence spectra in aqueous (or acetone in case of chlorophyll a) solution. During titration by the compounds from xanthine group the bathochromic effect in the porphyrin absorption spectra as well as the hypochromicity of the porphyrin Soret maximum can be noticed. The fluorescence quenching effect observed during interactions in the systems examined suggests the process of static quenching. The association and fluorescence quenching constants are of the order of magnitude of 103 - 102 mol-1. The results obtained show that xanthine and its derivatives can quench the fluorescence of the porphyrins according to the number of methyl groups in the molecule of quencher.

  19. Towards a merged satellite and in situ fluorescence ocean chlorophyll product

    OpenAIRE

    Lavigne, H.; D'Ortenzio, F.; Claustre, H.; Poteau, A.

    2012-01-01

    Understanding the ocean carbon cycle requires a precise assessment of phytoplankton biomass in the oceans. In terms of numbers of observations, satellite data represents the largest available data set. However, as they are limited to surface waters, they have to be merged with in situ observations. Amongst the in situ data, fluorescence profiles constitute the greatest data set available, because fluorometers operate routinely on oceanographic cruise since the seventies. Nevertheless,...

  20. Toward autonomous measurements of photosynthetic electron transport rates: An evaluation of active fluorescence-based measurements of photochemistry

    Czech Academy of Sciences Publication Activity Database

    Silsbe, G.; Oxborough, K.; Suggett, D. J.; Forster, R. M.; Ihnken, S.; Komárek, Ondřej; Lawrenz, Evelyn; Prášil, Ondřej; Roettgers, R.; Šicner, M.; Simis, S. G. H.; Van Dijk, M. A.; Kromkamp, J. C.

    2015-01-01

    Roč. 13, MAR 2015 (2015), s. 138-155 ISSN 1541-5856 Institutional support: RVO:61388971 Keywords : REPETITION-RATE FLUOROMETRY * CAVITY ABSORPTION METER * CHLOROPHYLL FLUORESCENCE Subject RIV: EE - Microbiology, Virology Impact factor: 2.008, year: 2015

  1. Analysis of signal to background ratio in synchrotron radiation X-ray fluorescence

    International Nuclear Information System (INIS)

    Sakurai, Kenji; Gohshi, Yohichi; Iida, Atsuo.

    1988-01-01

    The signal to background (S/B) ratio in energy dispersive X-ray fluorescence using synchrotron radiation (SR) was quantitatively analyzed. The S/B ratio, which has been significantly improved by taking advantage of the polarized nature of SR, was found to be strongly dependent on geometrical factors of the measurement system. From the analysis on the origin of the scattered background, the dependence of the S/B ratio on the geometry was quantitatively explained, mainly by the polarization properties of SR. Experimental conditions could be optimized by adjusting the degree of polarization of the incident beam and the detector solid angle. (author)

  2. The compositional change of Fluorescent Dissolved Organic Matter across Fram Strait assessed with use of a multi channel in situ fluorometer.

    Science.gov (United States)

    Raczkowska, A.; Kowalczuk, P.; Sagan, S.; Zabłocka, M.; Pavlov, A. K.; Granskog, M. A.; Stedmon, C. A.

    2016-02-01

    Observations of Colored Dissolved Organic Matter absorption (CDOM) and fluorescence (FDOM) from water samples and an in situ fluorometer and of Inherent Optical Properties (IOP; light absorption and scattering) were carried out along a section across Fram Strait at 79°N. A 3 channel Wetlabs Wetstar fluorometer was deployed, with channels for humic- and protein-like DOM and used to assess distribution of different FDOM fractions. A relationship between fluorescence intensity of the protein-like fraction of FDOM and chlorophyll a fluorescence was found and indicated the importance of phytoplankton biomass in West Spitsbergen Current waters as a significant source of protein-like FDOM. East Greenland Current waters has low concentration of chlorophyll a, and were characterized by high humic-like FDOM fluorescence. An empirical relationship between humic-like FDOM fluorescence intensity and CDOM absorption was derived and confirms the dominance of terrigenous like CDOM on the composition of DOM in the East Greenland Current. These high resolution profile data offer a simple approach to fractionate the contribution of these two DOM source to DOM across the Fram Strait and may help refine estimates of DOC fluxes in and out of the Arctic through this region.

  3. Lil3 dimerization and chlorophyll binding in Arabidopsis thaliana.

    Science.gov (United States)

    Mork-Jansson, Astrid Elisabeth; Gargano, Daniela; Kmiec, Karol; Furnes, Clemens; Shevela, Dmitriy; Eichacker, Lutz Andreas

    2015-10-07

    The two-helix light harvesting like (Lil) protein Lil3 belongs to the family of chlorophyll binding light harvesting proteins of photosynthetic membranes. A function in tetrapyrrol synthesis and stabilization of geranylgeraniol reductase has been shown. Lil proteins contain the chlorophyll a/b-binding motif; however, binding of chlorophyll has not been demonstrated. We find that Lil3.2 from Arabidopsis thaliana forms heterodimers with Lil3.1 and binds chlorophyll. Lil3.2 heterodimerization (25±7.8 nM) is favored relative to homodimerization (431±59 nM). Interaction of Lil3.2 with chlorophyll a (231±49 nM) suggests that heterodimerization precedes binding of chlorophyll in Arabidopsis thaliana. Copyright © 2015 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

  4. Prospects for detecting oxygen, water, and chlorophyll on an exo-Earth.

    Science.gov (United States)

    Brandt, Timothy D; Spiegel, David S

    2014-09-16

    The goal of finding and characterizing nearby Earth-like planets is driving many NASA high-contrast flagship mission concepts, the latest of which is known as the Advanced Technology Large-Aperture Space Telescope (ATLAST). In this article, we calculate the optimal spectral resolution R = λ/δλ and minimum signal-to-noise ratio per spectral bin (SNR), two central design requirements for a high-contrast space mission, to detect signatures of water, oxygen, and chlorophyll on an Earth twin. We first develop a minimally parametric model and demonstrate its ability to fit synthetic and observed Earth spectra; this allows us to measure the statistical evidence for each component's presence. We find that water is the easiest to detect, requiring a resolution R ≳ 20, while the optimal resolution for oxygen is likely to be closer to R = 150, somewhat higher than the canonical value in the literature. At these resolutions, detecting oxygen will require approximately two times the SNR as water. Chlorophyll requires approximately six times the SNR as oxygen for an Earth twin, only falling to oxygen-like levels of detectability for a low cloud cover and/or a large vegetation covering fraction. This suggests designing a mission for sensitivity to oxygen and adopting a multitiered observing strategy, first targeting water, then oxygen on the more favorable planets, and finally chlorophyll on only the most promising worlds.

  5. Evaluation of nitrogen status and total chlorophyll in longkong (Aglaia dookkoo Griff. leaves under water stress using a chlorophyll meter

    Directory of Open Access Journals (Sweden)

    Sdoodee, S.

    2005-07-01

    Full Text Available A chlorophyll meter (SPAD-502 was used to assess nitrogen status and total chlorophyll in longkong leaves, leaves from twelve of 10-year-old trees grown in the experimental plot at Prince of Songkla University, Songkhla province. The relationship between SPAD-502 meter reading and nitrogen status and total chlorophyll content analyzed in the laboratory was evaluated during 8 months (May-December 2003. It was found that the trend of the relationships in each month was similar. There was no significant differenceamong regression linears of all months. The data of 8 months showed that SPAD-reading and nitrogen content, and SPAD-reading and total chlorophyll content were related in a positive manner. They were Y = 0.19X+10.10, r = 0.76** (n = 240, and Y = 0.43X-7.89, r = 0.79** (n = 400, respectively. The SPAD-502 was then used to assess total nitrogen and total chlorophyll content during imposed water stress. Fifteen 4-yearold plants were grown in pots (each pot containing 50 kg soil volume. The experiment was arranged in acompletely randomized design with 3 treatments: (1 daily watering (2 once watering on day 7 (3 no watering with 5 replications during 14 days of the experimental period. Measurements showed a continuous decrease of SPAD-reading in the treatment of no watering. On day 14, a significant difference of SPAD- reading values between the treatment of daily watering and no watering was found. Then, the values of nitrogen content and total chlorophyll were assessed by using the linear regression equations. From the result, it is suggested that the measurement by chlorophyll meter is a rapid technique for the evaluation of total chlorophyll and nitrogen status in longkong leaves during water stress.

  6. Stink Bug Feeding Induces Fluorescence in Developing Cotton Bolls

    Directory of Open Access Journals (Sweden)

    Toews Michael D

    2011-08-01

    Full Text Available Abstract Background Stink bugs (Hemiptera: Pentatomidae comprise a critically important insect pest complex affecting 12 major crops worldwide including cotton. In the US, stink bug damage to developing cotton bolls causes boll abscission, lint staining, reduced fiber quality, and reduced yields with estimated losses ranging from 10 to 60 million dollars annually. Unfortunately, scouting for stink bug damage in the field is laborious and excessively time consuming. To improve scouting accuracy and efficiency, we investigated fluorescence changes in cotton boll tissues as a result of stink bug feeding. Results Fluorescent imaging under long-wave ultraviolet light showed that stink bug-damaged lint, the inner carpal wall, and the outside of the boll emitted strong blue-green fluorescence in a circular region near the puncture wound, whereas undamaged tissue emissions occurred at different wavelengths; the much weaker emission of undamaged tissue was dominated by chlorophyll fluorescence. We further characterized the optimum emission and excitation spectra to distinguish between stink bug damaged bolls from undamaged bolls. Conclusions The observed characteristic fluorescence peaks associated with stink bug damage give rise to a fluorescence-based method to rapidly distinguish between undamaged and stink bug damaged cotton bolls. Based on the fluorescent fingerprint, we envision a fluorescence reflectance imaging or a fluorescence ratiometric device to assist pest management professionals with rapidly determining the extent of stink bug damage in a cotton field.

  7. A modern robust approach to remotely estimate chlorophyll in coastal and inland zones

    Science.gov (United States)

    Shanmugam, Palanisamy; He, Xianqiang; Singh, Rakesh Kumar; Varunan, Theenathayalan

    2018-05-01

    The chlorophyll concentration of a water body is an important proxy for representing the phytoplankton biomass. Its estimation from multi or hyper-spectral remote sensing data in natural waters is generally achieved by using (i) the waveband ratioing in two or more bands in the blue-green or (ii) by using a combination of the radiance peak position and magnitude in the red-near-infrared (NIR) spectrum. The blue-green ratio algorithms have been extensively used with satellite ocean color data to investigate chlorophyll distributions in open ocean and clear waters and the application of red-NIR algorithms is often restricted to turbid productive water bodies. These issues present the greatest obstacles to our ability to formulate a modern robust method suitable for quantitative assessments of the chlorophyll concentration in a diverse range of water types. The present study is focused to investigate the normalized water-leaving radiance spectra in the visible and NIR region and propose a robust algorithm (Generalized ABI, GABI algorithm) for chlorophyll concentration retrieval based on Algal Bloom index (ABI) which separates phytoplankton signals from other constituents in the water column. The GABI algorithm is validated using independent in-situ data from various regional to global waters and its performance is further evaluated by comparison with the blue-green waveband ratios and red-NIR algorithms. The results revealed that GABI yields significantly more accurate chlorophyll concentrations (with uncertainties less than 13.5%) and remains more stable in different waters types when compared with the blue-green waveband ratios and red-NIR algorithms. The performance of GABI is further demonstrated using HICO images from nearshore turbid productive waters and MERIS and MODIS-Aqua images from coastal and offshore waters of the Arabian Sea, Bay of Bengal and East China Sea.

  8. Biomolecule-to-fluorescent-color encoder: modulation of fluorescence emission via DNA structural changes

    Science.gov (United States)

    Nishimura, Takahiro; Ogura, Yusuke; Yamada, Kenji; Ohno, Yuko; Tanida, Jun

    2014-01-01

    A biomolecule-to-fluorescent-color (B/F) encoder for optical readout of biomolecular information is proposed. In the B/F encoder, a set of fluorescence wavelengths and their intensity levels are used for coding of a biomolecular signal. A hybridization chain reaction of hairpin DNAs labeled with fluorescent reporters was performed to generate the fluorescence color codes. The fluorescence is modulated via fluorescence resonance energy transfer, which is controlled by DNA structural changes. The results demonstrate that fluorescent color codes can be configured based on two wavelengths and five intensities using the B/F encoder, and the assigned codes can be retrieved via fluorescence measurements. PMID:25071950

  9. Preparation of a chlorophyll derivative and investigation of its photodynamic activities against cholangiocarcinoma.

    Science.gov (United States)

    Wu, Zhong-Ming; Wang, Li; Zhu, Wei; Gao, Ying-Hua; Wu, Hai-Ming; Wang, Mi; Hu, Tai-Shan; Yan, Yi-Jia; Chen, Zhi-Long

    2017-08-01

    Photodynamic therapy (PDT) is emerging as a promising method for the treatment of various cancer diseases. However, the clinical application of PDT is limited due to the lack of effective photosensitizers. In this study, a novel chlorophyll derivative, N,N-bis(2-carboxyethyl)pyropheophorbide a (BPPA), had been synthesized and characterized. BPPA had a characteristic long wavelength absorption peak at 669nm and a singlet oxygen quantum yield of 0.54. To investigate the photodynamic ability of BPPA against cholangiocarcinoma (CCA), cellular uptake, subcellular location and bio-distribution, in vitro and in vivo PDT efficacy of BPPA were studied. The results showed that BPPA could rapidly accumulate in QBC-939 cells and localize in the cytoplasm. BPPA- PDT was effective in reducing the cell viability in a drug dose- and light dose-dependent manner in vitro. In CCA xenograft nude mouse model, the concentration of BPPA in the plasma lowered rapidly, and the fluorescence signal peaked at 0.5h and 2h after injection in the skin and tumor, respectively. Significant quantities could be observed in the tumor. BPPA followed by irradiation could significantly inhibit growth of tumors, and histological examination revealed necrotic damage in PDT-treated tumors. These results suggested that BPPA could be a promising drug candidate for photodynamic therapy in cholangiocarcinoma. Published by Elsevier Masson SAS.

  10. Chlorophyll-a specific volume scattering function of phytoplankton.

    Science.gov (United States)

    Tan, Hiroyuki; Oishi, Tomohiko; Tanaka, Akihiko; Doerffer, Roland; Tan, Yasuhiro

    2017-06-12

    Chlorophyll-a specific light volume scattering functions (VSFs) by cultured phytoplankton in visible spectrum range is presented. Chlorophyll-a specific VSFs were determined based on the linear least squares method using a measured VSFs with different chlorophyll-a concentrations. We found obvious variability of it in terms of spectral and angular shapes of VSF between cultures. It was also presented that chlorophyll-a specific scattering significantly affected on spectral variation of the remote sensing reflectance, depending on spectral shape of b. This result is useful for developing an advance algorithm of ocean color remote sensing and for deep understanding of light in the sea.

  11. Effect of automobile pollution on chlorophyll content of roadside urban trees

    Directory of Open Access Journals (Sweden)

    M. Iqbal

    2015-09-01

    Full Text Available The effect of automobile pollution was determined on chlorophyll content of four different tree species viz. Azadirachta indica L., Conocarpus erectus L., Guiacum officinale L.and Eucalyptus sp. growing along the roads of the city.  Significant changes in the level of chlorophyll “a”, chlorophyll “b” and total chlorophyll “a+b” were found in the leaves of four tree species (A. indica, C. erectus, G.officinale and Eucalyptus sp. collected from polluted sites (Airport, Malir Halt, Quaidabad as compared to control site (Karachi University Campus. Lowest concentration of chlorophyll “a”, chlorophyll “b” and chlorophyll “a+b” was recorded in the leaf samples of all tree species collected from Quaidabad site when compared with the leaf samples collected from control site. The highest levels of chlorophyll pigment were recorded in all tree species leave samples collected from Karachi University Campus.  Similarly, better levels of chlorophyll “a”, chlorophyll “b” and total chlorophyll “a+b” was observed in all tree species growing at Airport site as compared to plants growing at Malir Halt and Quaidabad sites.  This study clearly indicated that the vehicular activities induced air pollution problem and affected on the level of chlorophyll pigments in trees which were exposed to road side pollution.

  12. Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study.

    Science.gov (United States)

    Wang, Quanxiu; Xie, Weibo; Xing, Hongkun; Yan, Ju; Meng, Xiangzhou; Li, Xinglei; Fu, Xiangkui; Xu, Jiuyue; Lian, Xingming; Yu, Sibin; Xing, Yongzhong; Wang, Gongwei

    2015-06-01

    Chlorophyll content is one of the most important physiological traits as it is closely related to leaf photosynthesis and crop yield potential. So far, few genes have been reported to be involved in natural variation of chlorophyll content in rice (Oryza sativa) and the extent of variations explored is very limited. We conducted a genome-wide association study (GWAS) using a diverse worldwide collection of 529 O. sativa accessions. A total of 46 significant association loci were identified. Three F2 mapping populations with parents selected from the association panel were tested for validation of GWAS signals. We clearly demonstrated that Grain number, plant height, and heading date7 (Ghd7) was a major locus for natural variation of chlorophyll content at the heading stage by combining evidence from near-isogenic lines and transgenic plants. The enhanced expression of Ghd7 decreased the chlorophyll content, mainly through down-regulating the expression of genes involved in the biosynthesis of chlorophyll and chloroplast. In addition, Narrow leaf1 (NAL1) corresponded to one significant association region repeatedly detected over two years. We revealed a high degree of polymorphism in the 5' UTR and four non-synonymous SNPs in the coding region of NAL1, and observed diverse effects of the major haplotypes. The loci or candidate genes identified would help to fine-tune and optimize the antenna size of canopies in rice breeding. Copyright © 2015 The Author. Published by Elsevier Inc. All rights reserved.

  13. Chlorophyll-derived fatty acids regulate expression of lipid metabolizing enzymes in liver - a nutritional opportunity

    Directory of Open Access Journals (Sweden)

    Wolfrum Christian

    2001-01-01

    Full Text Available Nutritional values of fatty acid classes are normally discussed on the basis of their saturated, monounsaturated and polyunsaturated structures with implicit understanding that they are straight-chain. Here we focus on chlorophyll-derived phytanic and pristanic acids that are minor isoprenoid branched-chain lipid constituents in food, but of unknown nutritional value. After describing the enzyme machinery that degrades these nutrient fatty acids in the peroxisome, we show by the criteria of a mouse model and of a human cell culture model that they induce with high potency expression of enzymes responsible for beta-oxidation of straight-chain fatty acids in the peroxisome. We summarize present mechanistic knowledge on fatty acid signaling to the nucleus, which involves protein/protein contacts between peroxisome proliferator activated receptor (PPAR and fatty acid binding protein (FABP. In this signaling event the branched-chain fatty acids are the most effective ones. Finally, on the basis of this nutrient-gene interaction we discuss nutritional opportunities and therapeutic aspects of the chlorophyll-derived fatty acids.

  14. Cylindrical aggregates of chlorophylls studied by small-angle neutron scatter

    Energy Technology Data Exchange (ETDEWEB)

    Worcester, D.L. [Univ. of Missouri, Columbus, MO (United States); Katz, J.J. [Argonne National Laboratory, IL (United States)

    1994-12-31

    Neutron small-angle scattering has demonstrated tubular chlorophyll aggregates formed by self-assembly of a variety of chlorophyll types in nonpolar solvents. The size and other properties of the tubular aggregates can be accounted for by stereochemical properties of the chlorophyll molecules. Features of some of the structures are remarkably similar to light harvesting chlorophyll complexes in vivo, particularly for photosynthetic bacteria. These nanotube chlorophyll structures may have applications as light harvesting biomaterials where efficient energy transfer occurs from an excited state which is highly delocalized.

  15. A dual-color fluorescence-based platform to identify selective inhibitors of Akt signaling.

    Directory of Open Access Journals (Sweden)

    Aranzazú Rosado

    Full Text Available BACKGROUND: Inhibition of Akt signaling is considered one of the most promising therapeutic strategies for many cancers. However, rational target-orientated approaches to cell based drug screens for anti-cancer agents have historically been compromised by the notorious absence of suitable control cells. METHODOLOGY/PRINCIPAL FINDINGS: In order to address this fundamental problem, we have developed BaFiso, a live-cell screening platform to identify specific inhibitors of this pathway. BaFiso relies on the co-culture of isogenic cell lines that have been engineered to sustain interleukin-3 independent survival of the parental Ba/F3 cells, and that are individually tagged with different fluorescent proteins. Whilst in the first of these two lines cell survival in the absence of IL-3 is dependent on the expression of activated Akt, the cells expressing constitutively-activated Stat5 signaling display IL-3 independent growth and survival in an Akt-independent manner. Small molecules can then be screened in these lines to identify inhibitors that rescue IL-3 dependence. CONCLUSIONS/SIGNIFICANCE: BaFiso measures differential cell survival using multiparametric live cell imaging and permits selective inhibitors of Akt signaling to be identified. BaFiso is a platform technology suitable for the identification of small molecule inhibitors of IL-3 mediated survival signaling.

  16. SENSITIVITY TO ENVIRONMENTAL STRESS OF PRATA,JAPIRA AND VITÓRIA BANANA CULTIVARS PROVEN BY CHLOROPHYLL a FLUORESCENCE

    Directory of Open Access Journals (Sweden)

    PRISCILA NOBRES DOS SANTOS

    Full Text Available ABSTRACT This study aimed to evaluate the physiological responses to environmental stress during pre- and post-harvest of the following banana cultivars: Prata (AAB, Japira (AAAB and Vitoria (AAAB. Analyses were carried out on young plants at vegetative stage (daughter-plant and adult plants at reproductive stage (motherplant. The experimental design was completely randomized. In the in vivo pre-harvest analysis were used seven replications, in a factorial scheme (3x2x2, three cultivars and two stages (vegetative and reproductive and two collection periods (March and June. For the analysis of post-harvest quality were used five replications in a factorial design (3x2x5, corresponding to three cultivars, two development stages and five periods of post-harvest analysis, carried out every two days from stage 4 of fruit ripening. The chlorophyll a fluorescence emission kinetics showed low photochemical performance of the three cultivars in June, a period characterized by lower temperatures and water deficit. Prata was the cultivar with the lowest tolerance to abiotic physiological behavior changes, which also reflected in fruit quality, because there was a change in physical and physicochemical parameters. Japira and Vitoria cultivars showed similar physiological responses in the pre- and post-harvest periods, according to their phylogenetic proximity. The total performance index, i.e., the conservation of energy absorbed by PSII up to the reduction of the final PSI acceptors (PItotal and the di-malonic aldehyde (MDA content were significantly higher in Japira and Vitoria cultivars compared to Prata cultivar in the reproductive phase. There was no significant change in the potential quantum efficiency of PSII (FV / FM = jP0 among the three cultivars. It was concluded that Japira and Vitoria cultivars showed greater plasticity to tolerate or even adapt to abiotic variations keeping higher fruit yield. PItotal is the most sensitive parameter during

  17. Recent Trends in Global Ocean Chlorophyll

    Science.gov (United States)

    Gregg, Watson; Casey, Nancy

    2004-01-01

    Recent analyses of SeaWiFS data have shown that global ocean chlorophyll has increased more than 5% since 1998. The North Pacific ocean basin has increased nearly 19%. To understand the causes of these trends we have applied the newly developed NASA Ocean Biogeochemical Assimilation Model (OBAM), which is driven in mechanistic fashion by surface winds, sea surface temperature, atmospheric iron deposition, sea ice, and surface irradiance. The mode1 utilizes chlorophyll from SeaWiFS in a daily assimilation. The model has in place many of the climatic variables that can be expected to produce the changes observed in SeaWiFS data. Ths enables us to diagnose the model performance, the assimilation performance, and possible causes for the increase in chlorophyll.

  18. Pithy brown core in ‘d’Anjou’ pear (Pyrus communis L.) fruit developing during controlled atmosphere storage at pO2 determined by monitoring chlorophyll fluorescense

    Science.gov (United States)

    Physiological responses and fruit quality of ‘d’Anjou’ pear fruit from five orchard lots were evaluated after cold storage in air or controlled atmospheres (CA) with the oxygen (O2) concentration based on assessment of fruit chlorophyll fluorescence (CF) or standard conditions (1.5 kPa O2). The pCO2...

  19. Time-resolved spectroscopic imaging reveals the fundamentals of cellular NADH fluorescence.

    Science.gov (United States)

    Li, Dong; Zheng, Wei; Qu, Jianan Y

    2008-10-15

    A time-resolved spectroscopic imaging system is built to study the fluorescence characteristics of nicotinamide adenine dinucleotide (NADH), an important metabolic coenzyme and endogenous fluorophore in cells. The system provides a unique approach to measure fluorescence signals in different cellular organelles and cytoplasm. The ratios of free over protein-bound NADH signals in cytosol and nucleus are slightly higher than those in mitochondria. The mitochondrial fluorescence contributes about 70% of overall cellular fluorescence and is not a completely dominant signal. Furthermore, NADH signals in mitochondria, cytosol, and the nucleus respond to the changes of cellular activity differently, suggesting that cytosolic and nuclear fluorescence may complicate the well-known relationship between mitochondrial fluorescence and cellular metabolism.

  20. Distribution of nutrients, chlorophyll and phytoplankton primary ...

    African Journals Online (AJOL)

    Distribution of nutrients, chlorophyll and phytoplankton primary production in ... Two cruises were undertaken in the vicinity of the Cape Frio upwelling cell ... and concentrations of nitrate, phosphate, silicate, oxygen and chlorophyll a. ... Estimates of the annual primary production for each of the water bodies were calculated.

  1. Regional ocean-colour chlorophyll algorithms for the Red Sea

    KAUST Repository

    Brewin, Robert J.W.

    2015-05-18

    The Red Sea is a semi-enclosed tropical marine ecosystem that stretches from the Gulf of Suez and Gulf of Aqaba in the north, to the Gulf of Aden in the south. Despite its ecological and economic importance, its biological environment is relatively unexplored. Satellite ocean-colour estimates of chlorophyll concentration (an index of phytoplankton biomass) offer an observational platform to monitor the health of the Red Sea. However, little is known about the optical properties of the region. In this paper, we investigate the optical properties of the Red Sea in the context of satellite ocean-colour estimates of chlorophyll concentration. Making use of a new merged ocean-colour product, from the European Space Agency (ESA) Climate Change Initiative, and in situ data in the region, we test the performance of a series of ocean-colour chlorophyll algorithms. We find that standard algorithms systematically overestimate chlorophyll when compared with the in situ data. To investigate this bias we develop an ocean-colour model for the Red Sea, parameterised to data collected during the Tara Oceans expedition, that estimates remote-sensing reflectance as a function of chlorophyll concentration. We used the Red Sea model to tune the standard chlorophyll algorithms and the overestimation in chlorophyll originally observed was corrected. Results suggest that the overestimation was likely due to an excess of CDOM absorption per unit chlorophyll in the Red Sea when compared with average global conditions. However, we recognise that additional information is required to test the influence of other potential sources of the overestimation, such as aeolian dust, and we discuss uncertainties in the datasets used. We present a series of regional chlorophyll algorithms for the Red Sea, designed for a suite of ocean-colour sensors, that may be used for further testing.

  2. An evanescent wave biosensor--Part I: Fluorescent signal acquisition from step-etched fiber optic probes.

    Science.gov (United States)

    Anderson, G P; Golden, J P; Ligler, F S

    1994-06-01

    A fiber-optic biosensor capable of remote continuous monitoring has recently been designed. To permit sensing at locations separate from the optoelectronic instrumentation, long optical fibers are utilized. An evanescent wave immuno-probe is prepared by removing the cladding near the distal end of the fiber and covalently attaching antibodies to the core. Probes with a radius unaltered from that of the original core inefficiently returned the signal produced upon binding the fluorescent-labelled antigen. To elucidate the limiting factors in signal acquisition, a series of fibers with increasingly reduced probe core radius was examined. The results were consistent with the V-number mismatch, the difference in mode carrying capacity between the clad and unclad fiber, being a critical factor in limiting signal coupling from the fiber probe. However, it was also delineated that conditions which conserve excitation power, such that power in the evanescent wave is optimized, must also be met to obtain a maximal signal. The threshold sensitivity for the optimal step-etched fiber probe was improved by over 20-fold in an immunoassay, although, it was demonstrated that signal acquisition decreased along the probe length, suggesting that a sensor region of uniform radius is not ideal.

  3. Modulation of photosystem II chlorophyll fluorescence by electrogenic events generated by photosystem I

    NARCIS (Netherlands)

    Bulychev, A.A.; Vredenberg, W.J.

    2001-01-01

    In an attempt to uncover electric field interactions between PS I and PS II during their functioning, fluorescence induction curves were measured on hydroxylamine-treated thylakoids of Chenopodium album under conditions ensuring low and high levels of photogenerated membrane potentials. In parallel

  4. Fluorescence detection of natural RNA using rationally designed "clickable" oligonucleotide probes

    DEFF Research Database (Denmark)

    Okholm, Anders; Kjems, Jørgen; Astakhova, Kira

    2014-01-01

    Herein a reliable approach to the design of effective fluorescent probes for RNA detection is described. The fluorescence signalling of hybridization by internally positioned polyaromatic hydrocarbons and rhodamine dyes was achieved with a low fluorescence background signal, high fluorescence qua...... quantum yields at ambient and elevated temperature, high selectivity and signal specificity of the probes when binding to miR-7 and circRNA targets....

  5. Self-interference fluorescence microscopy with three-phase detection for depth-resolved confocal epi-fluorescence imaging.

    Science.gov (United States)

    Braaf, Boy; de Boer, Johannes F

    2017-03-20

    Three-dimensional confocal fluorescence imaging of in vivo tissues is challenging due to sample motion and limited imaging speeds. In this paper a novel method is therefore presented for scanning confocal epi-fluorescence microscopy with instantaneous depth-sensing based on self-interference fluorescence microscopy (SIFM). A tabletop epi-fluorescence SIFM setup was constructed with an annular phase plate in the emission path to create a spectral self-interference signal that is phase-dependent on the axial position of a fluorescent sample. A Mach-Zehnder interferometer based on a 3 × 3 fiber-coupler was developed for a sensitive phase analysis of the SIFM signal with three photon-counter detectors instead of a spectrometer. The Mach-Zehnder interferometer created three intensity signals that alternately oscillated as a function of the SIFM spectral phase and therefore encoded directly for the axial sample position. Controlled axial translation of fluorescent microsphere layers showed a linear dependence of the SIFM spectral phase with sample depth over axial image ranges of 500 µm and 80 µm (3.9 × Rayleigh range) for 4 × and 10 × microscope objectives respectively. In addition, SIFM was in good agreement with optical coherence tomography depth measurements on a sample with indocyanine green dye filled capillaries placed at multiple depths. High-resolution SIFM imaging applications are demonstrated for fluorescence angiography on a dye-filled capillary blood vessel phantom and for autofluorescence imaging on an ex vivo fly eye.

  6. Spatial-temporal consistency between gross primary productivity and solar-induced chlorophyll fluorescence of vegetation in China during 2007-2014.

    Science.gov (United States)

    Ma, Jun; Xiao, Xiangming; Zhang, Yao; Doughty, Russell; Chen, Bangqian; Zhao, Bin

    2018-10-15

    Accurately estimating spatial-temporal patterns of gross primary production (GPP) is important for the global carbon cycle. Satellite-based light use efficiency (LUE) models are regarded as an efficient tool in simulating spatial-temporal dynamics of GPP. However, the accuracy assessment of GPP simulations from LUE models at both spatial and temporal scales remains a challenge. In this study, we simulated GPP of vegetation in China during 2007-2014 using a LUE model (Vegetation Photosynthesis Model, VPM) based on MODIS (moderate-resolution imaging spectroradiometer) images with 8-day temporal and 500-m spatial resolutions and NCEP (National Center for Environmental Prediction) climate data. Global Ozone Monitoring Instrument 2 (GOME-2) solar-induced chlorophyll fluorescence (SIF) data were used to compare with VPM simulated GPP (GPP VPM ) temporally and spatially using linear correlation analysis. Significant positive linear correlations exist between monthly GPP VPM and SIF data over a single year (2010) and multiple years (2007-2014) in most areas of China. GPP VPM is also significantly positive correlated with GOME-2 SIF (R 2  > 0.43) spatially for seasonal scales. However, poor consistency was detected between GPP VPM and SIF data at yearly scale. GPP dynamic trends have high spatial-temporal variation in China during 2007-2014. Temperature, leaf area index (LAI), and precipitation are the most important factors influence GPP VPM in the regions of East Qinghai-Tibet Plateau, Loss Plateau, and Southwestern China, respectively. The results of this study indicate that GPP VPM is temporally and spatially in line with GOME-2 SIF data, and space-borne SIF data have great potential for evaluating LUE-based GPP models. Copyright © 2018 Elsevier B.V. All rights reserved.

  7. Effects of biocides on chlorophyll contents of detached basil leaves

    Directory of Open Access Journals (Sweden)

    Titima Arunrangsi

    2013-06-01

    Full Text Available Herbicides and insecticides have been widely and intensively used in agricultural areas worldwide to enhance crop yield. However, many biocides cause serious environmental problems. In addition, the biocides may also have some effects on the treated agricultural crops. To study effects of biocides on chlorophyll content in detached basil leaves, 2,4-D dimethylamine salt (2,4 D-Amine, paraquat, carbosulfan, and azadirachtin, were chosen as representatives of biocide. After applying the chemicals to detached basil leaves overnight in darkness, chlorophyll contents were determined. Only treatment with 2,4 D-Amine resulted in reduction of chlorophyll contents significantly compared to treatment with deionized (DI water. In the case of paraquat and carbosulfan, chlorophyll contents were not significantly changed, while slightly higher chlorophyll contents, compared to DI water, after the treatment with azadirachtin, were observed. The results indicated that 2,4 D-Amine shows an ability to accelerate chlorophyll degradation, but azadirachtin helps to retard chlorophyll degradation, when each biocide is used at the concentration recommended by the manufacturer.

  8. The spontaneous chlorophyll mutation frequency in barley

    DEFF Research Database (Denmark)

    Jørgensen, Jørgen Helms; Jensen, Hans Peter

    1986-01-01

    A total of 1866 barley plants were progeny tested in the greenhouse. Twenty-five plants segregated for newly arisen, spontaneous chlorophyll mutant genes. Among the total of 470,129 seedlings screened there were 79 mutants (1.7 .+-. 0.6 .times. 10-4). The data are added to data from three similar...... materials and the resulting estimate of the chlorophyll mutant frequency is 1.6 .times. 10-4 in about 1.43 million seedlings. The estimate of the chlorophyll mutation rate per generation is close to 67.3 .times. 10-4 per diploid genome or in the order of 6 .times. 10-7 per locus and haploid genome....

  9. Nondestructive Optical Sensing of Flavonols and Chlorophyll in White Head Cabbage (Brassica oleracea L. var. capitata subvar. alba) Grown under Different Nitrogen Regimens.

    Science.gov (United States)

    Agati, Giovanni; Tuccio, Lorenza; Kusznierewicz, Barbara; Chmiel, Tomasz; Bartoszek, Agnieszka; Kowalski, Artur; Grzegorzewska, Maria; Kosson, Ryszard; Kaniszewski, Stanislaw

    2016-01-13

    A multiparametric optical sensor was used to nondestructively estimate phytochemical compounds in white cabbage leaves directly in the field. An experimental site of 1980 white cabbages (Brassica oleracea L. var. capitata subvar. alba), under different nitrogen (N) treatments, was mapped by measuring leaf transmittance and chlorophyll fluorescence screening in one leaf/cabbage head. The provided indices of flavonols (FLAV) and chlorophyll (CHL) displayed the opposite response to applied N rates, decreasing and increasing, respectively. The combined nitrogen balance index (NBI = CHL/FLAV) calculated was able to discriminate all of the plots under four N regimens (0, 100, 200, and 400 kg/ha) and was correlated with the leaf N content determined destructively. CHL and FLAV were properly calibrated against chlorophyll (R(2) = 0.945) and flavonol (R(2) = 0.932) leaf contents, respectively, by using a homographic fit function. The proposed optical sensing of cabbage crops can be used to estimate the N status of plants and perform precision fertilization to maintain acceptable crop yield levels and, additionally, to rapidly detect health-promoting flavonol antioxidants in Brassica plants.

  10. HPLC Analysis of Chlorophyll a, Chlorophyll b, and Beta-Carotene in Collard Greens: A Project for a Problem-Oriented Laboratory Course.

    Science.gov (United States)

    Silveira, Augustine, Jr.; And Others

    1984-01-01

    High performance liquid chromatography (HPLC) is used to separate and quantitate beta-carotene, chlorophyll a, and chlorophyll b originating from collard greens. Experimental procedures used and typical results obtained are discussed. (JN)

  11. Enhanced speed in fluorescence imaging using beat frequency multiplexing

    Science.gov (United States)

    Mikami, Hideharu; Kobayashi, Hirofumi; Wang, Yisen; Hamad, Syed; Ozeki, Yasuyuki; Goda, Keisuke

    2016-03-01

    Fluorescence imaging using radiofrequency-tagged emission (FIRE) is an emerging technique that enables higher imaging speed (namely, temporal resolution) in fluorescence microscopy compared to conventional fluorescence imaging techniques such as confocal microscopy and wide-field microscopy. It works based on the principle that it uses multiple intensity-modulated fields in an interferometric setup as excitation fields and applies frequency-division multiplexing to fluorescence signals. Unfortunately, despite its high potential, FIRE has limited imaging speed due to two practical limitations: signal bandwidth and signal detection efficiency. The signal bandwidth is limited by that of an acousto-optic deflector (AOD) employed in the setup, which is typically 100-200 MHz for the spectral range of fluorescence excitation (400-600 nm). The signal detection efficiency is limited by poor spatial mode-matching between two interfering fields to produce a modulated excitation field. Here we present a method to overcome these limitations and thus to achieve higher imaging speed than the prior version of FIRE. Our method achieves an increase in signal bandwidth by a factor of two and nearly optimal mode matching, which enables the imaging speed limited by the lifetime of the target fluorophore rather than the imaging system itself. The higher bandwidth and better signal detection efficiency work synergistically because higher bandwidth requires higher signal levels to avoid the contribution of shot noise and amplifier noise to the fluorescence signal. Due to its unprecedentedly high-speed performance, our method has a wide variety of applications in cancer detection, drug discovery, and regenerative medicine.

  12. [Estimation of forest canopy chlorophyll content based on PROSPECT and SAIL models].

    Science.gov (United States)

    Yang, Xi-guang; Fan, Wen-yi; Yu, Ying

    2010-11-01

    The forest canopy chlorophyll content directly reflects the health and stress of forest. The accurate estimation of the forest canopy chlorophyll content is a significant foundation for researching forest ecosystem cycle models. In the present paper, the inversion of the forest canopy chlorophyll content was based on PROSPECT and SAIL models from the physical mechanism angle. First, leaf spectrum and canopy spectrum were simulated by PROSPECT and SAIL models respectively. And leaf chlorophyll content look-up-table was established for leaf chlorophyll content retrieval. Then leaf chlorophyll content was converted into canopy chlorophyll content by Leaf Area Index (LAD). Finally, canopy chlorophyll content was estimated from Hyperion image. The results indicated that the main effect bands of chlorophyll content were 400-900 nm, the simulation of leaf and canopy spectrum by PROSPECT and SAIL models fit better with the measured spectrum with 7.06% and 16.49% relative error respectively, the RMSE of LAI inversion was 0. 542 6 and the forest canopy chlorophyll content was estimated better by PROSPECT and SAIL models with precision = 77.02%.

  13. The application of anti-ESAT-6 monoclonal antibody fluorescent probe in ex vivo near-infrared fluorescence imaging in mice with pulmonary tuberculosis.

    Science.gov (United States)

    Feng, Feng; Zhang, Haoling; Zhu, Zhaoqin; Li, Cong; Shi, Yuxin; Zhang, Zhiyong

    2014-09-01

    Here, we aimed to assess the feasibility of anti-ESAT-6 monoclonal antibody (mAb) coupling with IR783 and rhodamine fluorescent probe in the detection of ESAT-6 expression in tuberculosis tissue of mice using near-infrared fluorescence imaging. IR783 and rhodamine were conjugated to the anti-ESAT-6 mAb or IgG. Mice in the experimental group were injected with fluorescence-labeled mAb probe, and mice in the control group were injected with fluorescence-labeled non-specific IgG antibody. Twenty-four hours later, the lung tissue of mice was examined using ex vivo near-infrared fluorescence imaging. In addition, the contrast-to-noise ratio (CNR) was calculated by measuring the signal intensities of the pulmonary lesions, normal lung tissue and background noise. The frozen lung tissue section was examined under fluorescence microscopy and compared with hemoxylin and eosin (HE) staining. The ex vivo near-infrared fluorescence imaging showed that the fluorescence signal in the lung tuberculosis lesions in the experimental group was significantly enhanced, whereas there was only a weak fluorescence signal or even no fluorescence signal in the control group. CNR values were 64.40 ± 7.02 (n = 6) and 8.75 ± 3.87 (n = 6), respectively (t = 17.01, p fluorescence accumulation distribution detected under fluorescence microscopy was consistent with HE staining of the tuberculosis region. In conclusion, anti-ESAT-6 mAb fluorescent probe could target and be applied in specific ex vivo imaging of mice tuberculosis, and may be of further use in tuberculosis in living mice. Copyright © 2013 John Wiley & Sons, Ltd.

  14. [Nature of the electron excited state in pigment redox reactions. II. Analysis of the scheme of primary processes in the photooxidation reaction of chlorophylls a and b and pheophytin a ].

    Science.gov (United States)

    Andreeva, N E; Barashkov, B I; Zakharova, G V; Shubin, V V; Chibisov, A K

    1978-01-01

    A scheme of primary reactions in photooxidation of pigments was considered assuming that electron transfer processes can occur via singlet excited as well as triplet states. The results of analysis are compared with the experimental data on relative yield values of chlorophylls a, b, and pheophytin a cation-radicals, as well as with the data on fluorescence quenching. A conclusion has been drawn that photooxidation of pigments proceeds exclusively via the triplet state. The dependence of rate constant quenching values of chlorophyll a triplet state by certain electron acceptors on values of half cell potentials was given.

  15. Filling-in of Near-infrared Solar Lines by Terrestrial Fluorescence and Other Geophysical Effects: Simulations and Space-based Observations from SCIAMACHY and GOSAT

    Science.gov (United States)

    Joiner, Joanna (Editor); Yoshida, Yasuko; Vasilkov, A. P.; Middleton, E. M. (Editor); Campbell, P. K. E.; Yoshida, Y.; Huze, A.; Corp, L. A.

    2012-01-01

    spatial variations of SCIAMACHY additive signals with those of GOSAT and the Enhanced Vegetation Index (EVI) from the MODerate-resolution Imaging Spectroradiometer (MODIS). Although the derived additive signals from SCIAMACHY are extremely weak at 866 nm, their spatial and temporal variations are consistent with chlorophyll a fluorescence or another vegetation-related source. We also show that fillingin occurs at 866 nm over some barren areas, possibly originating from luminescent minerals in rock and soil.

  16. Creating infinite contrast in fluorescence microscopy by using lanthanide centered emission

    DEFF Research Database (Denmark)

    R. Carro-Temboury, Miguel; Arppe, Riikka Matleena; Hempel, Casper

    2017-01-01

    The popularity of fluorescence microscopy arises from the inherent mode of action, where the fluorescence emission from probes is used to visualize selected features on a presumed dark background. However, the background is rarely truly dark, and image processing and analysis is needed to enhance...... the fluorescent signal that is ascribed to the selected feature. The image acquisition is facilitated by using considerable illumination, bright probes at a relatively high concentration in order to make the fluorescent signal significantly more intense than the background signal. Here, we present two methods......, while method II resolves the fluorescent signal by subtracting a background calculated via the gradient. Both methods improve signal-to-background ratio significantly and we suggest that spectral imaging of lanthanide-centered emission can be used as a tool to obtain absolute contrast in bioimaging....

  17. Uphill energy transfer in photosystem I from Chlamydomonas reinhardtii. Time-resolved fluorescence measurements at 77 K.

    Science.gov (United States)

    Giera, Wojciech; Szewczyk, Sebastian; McConnell, Michael D; Redding, Kevin E; van Grondelle, Rienk; Gibasiewicz, Krzysztof

    2018-04-04

    Energetic properties of chlorophylls in photosynthetic complexes are strongly modulated by their interaction with the protein matrix and by inter-pigment coupling. This spectral tuning is especially striking in photosystem I (PSI) complexes that contain low-energy chlorophylls emitting above 700 nm. Such low-energy chlorophylls have been observed in cyanobacterial PSI, algal and plant PSI-LHCI complexes, and individual light-harvesting complex I (LHCI) proteins. However, there has been no direct evidence of their presence in algal PSI core complexes lacking LHCI. In order to determine the lowest-energy states of chlorophylls and their dynamics in algal PSI antenna systems, we performed time-resolved fluorescence measurements at 77 K for PSI core and PSI-LHCI complexes isolated from the green alga Chlamydomonas reinhardtii. The pool of low-energy chlorophylls observed in PSI cores is generally smaller and less red-shifted than that observed in PSI-LHCI complexes. Excitation energy equilibration between bulk and low-energy chlorophylls in the PSI-LHCI complexes at 77 K leads to population of excited states that are less red-shifted (by ~ 12 nm) than at room temperature. On the other hand, analysis of the detection wavelength dependence of the effective trapping time of bulk excitations in the PSI core at 77 K provided evidence for an energy threshold at ~ 675 nm, above which trapping slows down. Based on these observations, we postulate that excitation energy transfer from bulk to low-energy chlorophylls and from bulk to reaction center chlorophylls are thermally activated uphill processes that likely occur via higher excitonic states of energy accepting chlorophylls.

  18. Dual-detection confocal fluorescence microscopy: fluorescence axial imaging without axial scanning.

    Science.gov (United States)

    Lee, Dong-Ryoung; Kim, Young-Duk; Gweon, Dae-Gab; Yoo, Hongki

    2013-07-29

    We propose a new method for high-speed, three-dimensional (3-D) fluorescence imaging, which we refer to as dual-detection confocal fluorescence microscopy (DDCFM). In contrast to conventional beam-scanning confocal fluorescence microscopy, where the focal spot must be scanned either optically or mechanically over a sample volume to reconstruct a 3-D image, DDCFM can obtain the depth of a fluorescent emitter without depth scanning. DDCFM comprises two photodetectors, each with a pinhole of different size, in the confocal detection system. Axial information on fluorescent emitters can be measured by the axial response curve through the ratio of intensity signals. DDCFM can rapidly acquire a 3-D fluorescent image from a single two-dimensional scan with less phototoxicity and photobleaching than confocal fluorescence microscopy because no mechanical depth scans are needed. We demonstrated the feasibility of the proposed method by phantom studies.

  19. Practical lesson of Photosynthesis: A demonstration of Hill reaction in chloroplasts with energy dissipation by fluorescence upon photosystems uncoupling or inhibition by Diuron herbicide

    Directory of Open Access Journals (Sweden)

    Vadim Ravara Viviani

    2016-05-01

    Full Text Available During photosynthesis, the photochemical electron transfer process is easily demonstrated by the Hill reaction, where artificial electron acceptors are reduced by active chloroplasts suspensions in the presence of light.  However, the destiny of luminous energy absorbed by chlorophyll molecules in uncoupled or damaged photosystems is not usually demonstrated. Here we provide an adaptation of the classical Hill reaction using intact spinach chloroplasts, which includes the visualization of energy dissipation by fluorescence in lysed chloroplasts, and a dose/effect response in photosystems inhibited by the herbicide DCMU. This laboratory lesson, which is aimed to biochemistry and biophysics for undergraduate courses of Chemistry, Biological, Environmental and Agricultural Sciences, provides the basic photochemical principles using the classical Hill reaction, and photophysical principles through the visualization of energy dissipation by chlorophyll fluorescence,  improving the understanding of the photosynthetic process, and introducing the concept of fluorescence and its applications as bioanalytical tool to monitor photosynthesis in plants and vegetal ecosystems.

  20. Nanosecond fluorescence spectroscopy

    International Nuclear Information System (INIS)

    Leskovar, B.

    1985-03-01

    This article is a summary of a short course lecture given in conjunction with the 1984 Nuclear Science Symposium. Measuring systems for nanosecond fluorescence spectroscopy using single-photon counting techniques are presented. These involve systems based on relaxation-type spark gap light pulser and synchronously pumped mode-locked dye lasers. Furthermore, typical characteristics and optimization of operating conditions of the critical components responsible for the system time resolution are discussed. A short comparison of the most important deconvolution methods for numerical analysis of experimental data is given particularly with respect to the signal-to-noise ratio of the fluorescence signal. 22 refs., 8 figs

  1. In vivo measurements of the seasonal photosynthetic fluorescence of the Mediterranean coral Cladocora caespitosa (L.

    Directory of Open Access Journals (Sweden)

    Andrea Peirano

    2007-12-01

    Full Text Available In situ photosynthetic fluorescence of the zooxanthellate Mediterranean coral Cladocora caespitosa (L. was measured seasonally on colonies from 5 to 27 m depth using an INF-300 Integrating Natural Fluorometer (Biospherical Instrument Inc.. This oceanographic instrument, used to measure the in vivo phytoplankton chlorophyll a (Chl a fluorescence, was adapted to record the natural fluorescence of C. caespitosa by SCUBA divers. The resulting curves of natural fluorescence of Chl a vs photosynthetically active radiation (PAR 400-700 nm showed that: (1 natural fluorescence was limited by light availability in both deep and shallow colonies in all seasons; (2 photosynthesis occurred in C. caespitosa also in winter, when temperature is low and seawater turbidity contributes significantly to PAR attenuation; and (3 the efficiency of the Chl a fluorescence increased from summer to winter. This last finding outlines the winter coupling between zooxanthellae activity and calcification processes and is consistent with the formation of the high density band in the coral skeleton.

  2. Fluorescence spectroscopy of dental calculus

    International Nuclear Information System (INIS)

    Bakhmutov, D; Gonchukov, S; Sukhinina, A

    2010-01-01

    The aim of the present study was to investigate the fluorescence properties of dental calculus in comparison with the properties of adjacent unaffected tooth structure using both lasers and LEDs in the UV-visible range for fluorescence excitation. The influence of calculus color on the informative signal is demonstrated. The optimal spectral bands of excitation and registration of the fluorescence are determined

  3. Fluorescence spectroscopy of dental calculus

    Science.gov (United States)

    Bakhmutov, D.; Gonchukov, S.; Sukhinina, A.

    2010-05-01

    The aim of the present study was to investigate the fluorescence properties of dental calculus in comparison with the properties of adjacent unaffected tooth structure using both lasers and LEDs in the UV-visible range for fluorescence excitation. The influence of calculus color on the informative signal is demonstrated. The optimal spectral bands of excitation and registration of the fluorescence are determined.

  4. A database of chlorophyll a in Australian waters

    Science.gov (United States)

    Davies, Claire H.; Ajani, Penelope; Armbrecht, Linda; Atkins, Natalia; Baird, Mark E.; Beard, Jason; Bonham, Pru; Burford, Michele; Clementson, Lesley; Coad, Peter; Crawford, Christine; Dela-Cruz, Jocelyn; Doblin, Martina A.; Edgar, Steven; Eriksen, Ruth; Everett, Jason D.; Furnas, Miles; Harrison, Daniel P.; Hassler, Christel; Henschke, Natasha; Hoenner, Xavier; Ingleton, Tim; Jameson, Ian; Keesing, John; Leterme, Sophie C.; James McLaughlin, M.; Miller, Margaret; Moffatt, David; Moss, Andrew; Nayar, Sasi; Patten, Nicole L.; Patten, Renee; Pausina, Sarah A.; Proctor, Roger; Raes, Eric; Robb, Malcolm; Rothlisberg, Peter; Saeck, Emily A.; Scanes, Peter; Suthers, Iain M.; Swadling, Kerrie M.; Talbot, Samantha; Thompson, Peter; Thomson, Paul G.; Uribe-Palomino, Julian; van Ruth, Paul; Waite, Anya M.; Wright, Simon; Richardson, Anthony J.

    2018-02-01

    Chlorophyll a is the most commonly used indicator of phytoplankton biomass in the marine environment. It is relatively simple and cost effective to measure when compared to phytoplankton abundance and is thus routinely included in many surveys. Here we collate 173, 333 records of chlorophyll a collected since 1965 from Australian waters gathered from researchers on regular coastal monitoring surveys and ocean voyages into a single repository. This dataset includes the chlorophyll a values as measured from samples analysed using spectrophotometry, fluorometry and high performance liquid chromatography (HPLC). The Australian Chlorophyll a database is freely available through the Australian Ocean Data Network portal (https://portal.aodn.org.au/). These data can be used in isolation as an index of phytoplankton biomass or in combination with other data to provide insight into water quality, ecosystem state, and relationships with other trophic levels such as zooplankton or fish.

  5. Fluorescence molecular tomography in the presence of background fluorescence

    International Nuclear Information System (INIS)

    Soubret, Antoine; Ntziachristos, Vasilis

    2006-01-01

    Fluorescence molecular tomography is an emerging imaging technique that resolves the bio-distribution of engineered fluorescent probes developed for in vivo reporting of specific cellular and sub-cellular targets. The method can detect fluorochromes in picomole amounts or less, imaged through entire animals, but the detection sensitivity and imaging performance drop in the presence of background, non-specific fluorescence. In this study, we carried out a theoretical and an experimental investigation on the effect of background fluorescence on the measured signal and on the tomographic reconstruction. We further examined the performance of three subtraction methods based on physical models of photon propagation, using experimental data on phantoms and small animals. We show that the data pre-processing with subtraction schemes can improve image quality and quantification when non-specific background florescence is present

  6. A review of ocean chlorophyll algorithms and primary production models

    Science.gov (United States)

    Li, Jingwen; Zhou, Song; Lv, Nan

    2015-12-01

    This paper mainly introduces the five ocean chlorophyll concentration inversion algorithm and 3 main models for computing ocean primary production based on ocean chlorophyll concentration. Through the comparison of five ocean chlorophyll inversion algorithm, sums up the advantages and disadvantages of these algorithm,and briefly analyzes the trend of ocean primary production model.

  7. Ocean Chlorophyll as a Precursor of ENSO: An Earth System Modeling Study

    Science.gov (United States)

    Park, Jong-Yeon; Dunne, John P.; Stock, Charles A.

    2018-02-01

    Ocean chlorophyll concentration, a proxy for phytoplankton, is strongly influenced by internal ocean dynamics such as those associated with El Niño-Southern Oscillation (ENSO). Observations show that ocean chlorophyll responses to ENSO generally lead sea surface temperature (SST) responses in the equatorial Pacific. A long-term global Earth system model simulation incorporating marine biogeochemical processes also exhibits a preceding chlorophyll response. In contrast to simulated SST anomalies, which significantly lag the wind-driven subsurface heat response to ENSO, chlorophyll anomalies respond rapidly. Iron was found to be the key factor connecting the simulated surface chlorophyll anomalies to the subsurface ocean response. Westerly wind bursts decrease central Pacific chlorophyll by reducing iron supply through wind-driven thermocline deepening but increase western Pacific chlorophyll by enhancing the influx of coastal iron from the maritime continent. Our results mechanistically support the potential for chlorophyll-based indices to inform seasonal ENSO forecasts beyond previously identified SST-based indices.

  8. [Vegetation index estimation by chlorophyll content of grassland based on spectral analysis].

    Science.gov (United States)

    Xiao, Han; Chen, Xiu-Wan; Yang, Zhen-Yu; Li, Huai-Yu; Zhu, Han

    2014-11-01

    Comparing the methods of existing remote sensing research on the estimation of chlorophyll content, the present paper confirms that the vegetation index is one of the most practical and popular research methods. In recent years, the increasingly serious problem of grassland degradation. This paper, firstly, analyzes the measured reflectance spectral curve and its first derivative curve in the grasslands of Songpan, Sichuan and Gongger, Inner Mongolia, conducts correlation analysis between these two spectral curves and chlorophyll content, and finds out the regulation between REP (red edge position) and grassland chlorophyll content, that is, the higher the chlorophyll content is, the higher the REIP (red-edge inflection point) value would be. Then, this paper constructs GCI (grassland chlorophyll index) and selects the most suitable band for retrieval. Finally, this paper calculates the GCI by the use of satellite hyperspectral image, conducts the verification and accuracy analysis of the calculation results compared with chlorophyll content data collected from field of twice experiments. The result shows that for grassland chlorophyll content, GCI has stronger sensitivity than other indices of chlorophyll, and has higher estimation accuracy. GCI is the first proposed to estimate the grassland chlorophyll content, and has wide application potential for the remote sensing retrieval of grassland chlorophyll content. In addition, the grassland chlorophyll content estimation method based on remote sensing retrieval in this paper provides new research ideas for other vegetation biochemical parameters' estimation, vegetation growth status' evaluation and grassland ecological environment change's monitoring.

  9. OSU Chlorophyll Bloom Product

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This product was developed for the Oregon coast based on the observed change between running 8-day composite chlorophyll-a (CHL) data obtained by the MODerate...

  10. Resolving the contribution of the uncoupled phycobilisomes to cyanobacterial pulse-amplitude modulated (PAM) fluorometry signals.

    Science.gov (United States)

    Acuña, Alonso M; Snellenburg, Joris J; Gwizdala, Michal; Kirilovsky, Diana; van Grondelle, Rienk; van Stokkum, Ivo H M

    2016-01-01

    Pulse-amplitude modulated (PAM) fluorometry is extensively used to characterize photosynthetic organisms on the slow time-scale (1-1000 s). The saturation pulse method allows determination of the quantum yields of maximal (F(M)) and minimal fluorescence (F(0)), parameters related to the activity of the photosynthetic apparatus. Also, when the sample undergoes a certain light treatment during the measurement, the fluorescence quantum yields of the unquenched and the quenched states can be determined. In the case of cyanobacteria, however, the recorded fluorescence does not exclusively stem from the chlorophyll a in photosystem II (PSII). The phycobilins, the pigments of the cyanobacterial light-harvesting complexes, the phycobilisomes (PB), also contribute to the PAM signal, and therefore, F(0) and F(M) are no longer related to PSII only. We present a functional model that takes into account the presence of several fluorescent species whose concentrations can be resolved provided their fluorescence quantum yields are known. Data analysis of PAM measurements on in vivo cells of our model organism Synechocystis PCC6803 is discussed. Three different components are found necessary to fit the data: uncoupled PB (PB(free)), PB-PSII complexes, and free PSI. The free PSII contribution was negligible. The PB(free) contribution substantially increased in the mutants that lack the core terminal emitter subunits allophycocyanin D or allophycocyanin F. A positive correlation was found between the amount of PB(free) and the rate constants describing the binding of the activated orange carotenoid protein to PB, responsible for non-photochemical quenching.

  11. Foliar Reflectance and Fluorescence Responses for Corn and Soybean Plants Under Nitrogen Stress

    Science.gov (United States)

    Middleton, E. M.; Campbell, P. K. Entcheva; Corp, L. A.; Butcher, L. M.; McMurtrey, J. E.

    2003-01-01

    We are investigating the use of spectral indices derived from actively induced fluorescence spectra and passive optical spectra. We examined the influence of photosynthetic pigment, carbon (C) and nitrogen (N) content on the spectral fluorescence and passive optical property characteristics of mature, upper leaves from plants provided different N fertilizer application rates: 20%, 50%, 100% and 150% of recommended N levels. A suite of optical, fluorescence, and biophysical measurements were collected on leaves from field grown corn (Zea mays L.) and soybean plants (Glycine max L.) grown in pots (greenhouse + ambient sunlight. Steady state laser-induced fluorescence emission spectra (5 nm resolution) were obtained from adaxial and abaxial surfaces resulting from excitation at single wavelengths (280, 380 or 360, and 532 nm). For emission spectra produced by each of these excitation wavelengths, ratios of emission peaks were calculated, including the red far-red chlorophyll fluorescence (ChlF) ratio (F685/F740) and the far-red/green (F740/F525) ratio. High resolution (< 3 nm) optical spectra (350-2500 nm) of reflectance, transmittance, and absorptance were also acquired for both adaxial and abaxial leaf surfaces. Species differences were demonstrated for several optical parameters. A 'red edge' derivative ratio determined from transmittance spectra [as the maximum first deivative, between 650-750 nm, normalized to the value at 744 nm, or Dmax/D744], was strongly associated with the C/N ratio (r(exp 2) = 0.90, P +/- 0.001). This ratio, calculated from reflectance spectra, was inversely related to chlorophyll b content (r(exp 2) = 0.91, P +/- 0.001) as was the ChlF (F685/F740) ratio obtained with 532 nm excitation (r(exp 2) = 0.76, P +/- 0.01). Discrimination of N treatment groups was possible with specific fluorescence band ratios (e.g., F740/F525 obtained with 380 nm excitation). Higher ChlF and blue-green emissions were measured from the abaxial leaf surfaces

  12. Sun-induced chlorophyll fluorescence and photochemical reflectance index improve remote-sensing gross primary production estimates under varying nutrient availability in a typical Mediterranean savanna ecosystem

    Science.gov (United States)

    Perez-Priego, O.; Guan, J.; Rossini, M.; Fava, F.; Wutzler, T.; Moreno, G.; Carvalhais, N.; Carrara, A.; Kolle, O.; Julitta, T.; Schrumpf, M.; Reichstein, M.; Migliavacca, M.

    2015-11-01

    This study investigates the performances of different optical indices to estimate gross primary production (GPP) of herbaceous stratum in a Mediterranean savanna with different nitrogen (N) and phosphorous (P) availability. Sun-induced chlorophyll fluorescence yield computed at 760 nm (Fy760), scaled photochemical reflectance index (sPRI), MERIS terrestrial-chlorophyll index (MTCI) and normalized difference vegetation index (NDVI) were computed from near-surface field spectroscopy measurements collected using high spectral resolution spectrometers covering the visible near-infrared regions. GPP was measured using canopy chambers on the same locations sampled by the spectrometers. We tested whether light-use efficiency (LUE) models driven by remote-sensing quantities (RSMs) can better track changes in GPP caused by nutrient supplies compared to those driven exclusively by meteorological data (MM). Particularly, we compared the performances of different RSM formulations - relying on the use of Fy760 or sPRI as a proxy for LUE and NDVI or MTCI as a fraction of absorbed photosynthetically active radiation (fAPAR) - with those of classical MM. Results showed higher GPP in the N-fertilized experimental plots during the growing period. These differences in GPP disappeared in the drying period when senescence effects masked out potential differences due to plant N content. Consequently, although MTCI was closely related to the mean of plant N content across treatments (r2 = 0.86, p < 0.01), it was poorly related to GPP (r2 = 0.45, p < 0.05). On the contrary sPRI and Fy760 correlated well with GPP during the whole measurement period. Results revealed that the relationship between GPP and Fy760 is not unique across treatments, but it is affected by N availability. Results from a cross-validation analysis showed that MM (AICcv = 127, MEcv = 0.879) outperformed RSM (AICcv =140, MEcv = 0.8737) when soil moisture was used to constrain the seasonal dynamic of LUE. However

  13. Chlorophyll a is a favorable substrate for Chlamydomonas Mg-dechelatase encoded by STAY-GREEN.

    Science.gov (United States)

    Matsuda, Kaori; Shimoda, Yousuke; Tanaka, Ayumi; Ito, Hisashi

    2016-12-01

    Mg removal from chlorophyll by Mg-dechelatase is the first step of chlorophyll degradation. Recent studies showed that in Arabidopsis, Stay Green (SGR) encodes Mg-dechelatase. Though the Escherichia coli expression system is advantageous for investigating the properties of Mg-dechelatase, Arabidopsis Mg-dechelatase is not successfully expressed in E. coli. Chlamydomonas reinhardtii SGR (CrSGR) has a long, hydrophilic tail, suggesting that active CrSGR can be expressed in E. coli. After the incubation of chlorophyll a with CrSGR expressed in E. coli, pheophytin a accumulated, indicating that active CrSGR was expressed in E. coli. Substrate specificity of CrSGR against chlorophyll b and an intermediate molecule of the chlorophyll b degradation pathway was examined. CrSGR exhibited no activity against chlorophyll b and low activity against 7-hydroxymethyl chlorophyll a, consistent with the fact that chlorophyll b is degraded only after conversion to chlorophyll a. CrSGR exhibited low activity against divinyl chlorophyll a and chlorophyll a', and no activity against chlorophyllide a, protochlorophyll a, chlorophyll c 2 , and Zn-chlorophyll a. These observations indicate that chlorophyll a is the most favorable substrate for CrSGR. When CrSGR was expressed in Arabidopsis cells, the chlorophyll content decreased, further confirming that SGR has Mg-dechelating activity in chloroplasts. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  14. The interrelationship between the lower oxygen limit, chlorophyll fluorescence and the xanthophyll cycle in plants.

    Science.gov (United States)

    Wright, A Harrison; DeLong, John M; Gunawardena, Arunika H L A N; Prange, Robert K

    2011-03-01

    The lower oxygen limit (LOL) in plants may be identified through the measure of respiratory gases [i.e. the anaerobic compensation point (ACP) or the respiratory quotient breakpoint (RQB)], but recent work shows it may also be identified by a sudden rise in dark minimum fluorescence (F(o)). The interrelationship between aerobic respiration and fermentative metabolism, which occur in the mitochondria and cytosol, respectively, and fluorescence, which emanates from the chloroplasts, is not well documented in the literature. Using spinach (Spinacia oleracea), this study showed that F(o) and photochemical quenching (q(P)) remained relatively unchanged until O(2) levels dropped below the LOL. An over-reduction of the plastoquinone (PQ) pool is believed to increase F(o) under dark + anoxic conditions. It is proposed that excess cytosolic reductant due to inhibition of the mitochondria's cytochrome oxidase under low-O(2), may be the primary reductant source. The maximum fluorescence (F(m)) is largely unaffected by low-O(2) in the dark, but was severely quenched, mirroring changes to the xanthophyll de-epoxidation state (DEPS), under even low-intensity light (≈4 μmol m(-2) s(-1)). In low light, the low-O(2)-induced increase in F(o) was also quenched, likely by non-photochemical and photochemical means. The degree of quenching in the light was negatively correlated with the level of ethanol fermentation in the dark. A discussion detailing the possible roles of cyclic electron flow, the xanthophyll cycle, chlororespiration and a pathway we termed 'chlorofermentation' were used to interpret fluorescence phenomena of both spinach and apple (Malus domestica) over a range of atmospheric conditions under both dark and low-light.

  15. Integrating multiple vegetation indices via an artificial neural network model for estimating the leaf chlorophyll content of Spartina alterniflora under interspecies competition.

    Science.gov (United States)

    Liu, Pudong; Shi, Runhe; Zhang, Chao; Zeng, Yuyan; Wang, Jiapeng; Tao, Zhu; Gao, Wei

    2017-10-31

    The invasive species Spartina alterniflora and native species Phragmites australis display a significant co-occurrence zonation pattern and this co-exist region exerts most competitive situations between these two species, competing for the limited space, directly influencing the co-exist distribution in the future. However, these two species have different growth ratios in this area, which increase the difficulty to detect the distribution situation directly by remote sensing. As chlorophyll content is a key indicator of plant growth and physiological status, the objective of this study was to reduce the effect of interspecies competition when estimating Cab content; we evaluated 79 published representative indices to determine the optimal indices for estimating the chlorophyll a and b (Cab) content. After performing a sensitivity analysis for all 79 spectral indices, five spectral indices were selected and integrated using an artificial neural network (ANN) to estimate the Cab content of different competition ratios: the Gitelson ratio green index, the transformed chlorophyll absorption ratio index/optimized soil-adjusted vegetation index, the modified normalized difference vegetation index, the chlorophyll fluorescence index, and the Vogelmann chlorophyll index. The ANN method yielded better results (R 2  = 0.7110 and RMSE = 8.3829 μg cm -2 ) on average than the best single spectral index (R 2  = 0.6319 and RMSE = 9.3535 μg cm -2 ), representing an increase of 10.78% in R 2 and a decrease of 10.38% in RMSE. Our results indicated that integrating multiple vegetation indices with an ANN can alleviate the impact of interspecies competition and achieve higher estimation accuracy than the traditional approach using a single index.

  16. Fluorescence Indices for the Proximal Sensing of Powdery Mildew, Nitrogen Supply and Water Deficit in Sugar Beet Leaves

    Directory of Open Access Journals (Sweden)

    Georg Leufen

    2014-03-01

    Full Text Available Using potted sugar beet plants we aimed to investigate the suitability of four fluorescence indices to detect and differentiate the impact of nitrogen supply, water deficit and powdery mildew in two sugar beet cultivars (Beta vulgaris L.. Plants were grown inside a polytunnel under two nitrogen levels combined with water deficit or full irrigation. Changes in plant physiology were recorded at two physiological stages with a multiparametric handheld fluorescence sensor and a fluorescence imaging system. The analysis of chlorophyll content and osmotic potential served as reference. Based on our results, the fluorescence indices “Nitrogen Balance Index” and “Simple Fluorescence Ratio” responded quite sensitively to drought stress and mildew infection. Moreover, the blue-to-far-red fluorescence ratio revealed significant stress-induced alterations in the plant physiology. In all, fluorescence indices might be used as single or combined indices for successful stress sensing. However, a robust stress differentiation by using only one fluorescence ratio could not be accomplished.

  17. Red and far red Sun-induced chlorophyll fluorescence as a measure of plant photosynthesis

    Czech Academy of Sciences Publication Activity Database

    Rossini, P. M.; Nedbal, L.; Guanter, L.; Ač, Alexander; Alonso, L.; Burkart, A.; Cogliati, S.; Colombo, R.; Damm, A.; Drusch, M.; Hanuš, Jan; Janoutová, Růžena; Julitta, T.; Kokkalis, P.; Moreno, J.; Novotný, Jan; Panigada, C.; Pinto, F.; Schickling, A.; Schuettemeyer, D.; Zemek, František; Rascher, U.

    2015-01-01

    Roč. 42, č. 6 (2015), s. 1632-1639 ISSN 0094-8276 Institutional support: RVO:67179843 Keywords : sun-induced fluorescence * remote sensing * stress detection * airborne images * HyPlant Subject RIV: EH - Ecology, Behaviour Impact factor: 4.212, year: 2015

  18. Application of Satellite Solar-Induced Chlorophyll Fluorescence to Understanding Large-Scale Variations in Vegetation Phenology and Function Over Northern High Latitude Forests

    Science.gov (United States)

    Jeong, Su-Jong; Schimel, David; Frankenberg, Christian; Drewry, Darren T.; Fisher, Joshua B.; Verma, Manish; Berry, Joseph A.; Lee, Jung-Eun; Joiner, Joanna

    2016-01-01

    This study evaluates the large-scale seasonal phenology and physiology of vegetation over northern high latitude forests (40 deg - 55 deg N) during spring and fall by using remote sensing of solar-induced chlorophyll fluorescence (SIF), normalized difference vegetation index (NDVI) and observation-based estimate of gross primary productivity (GPP) from 2009 to 2011. Based on GPP phenology estimation in GPP, the growing season determined by SIF time-series is shorter in length than the growing season length determined solely using NDVI. This is mainly due to the extended period of high NDVI values, as compared to SIF, by about 46 days (+/-11 days), indicating a large-scale seasonal decoupling of physiological activity and changes in greenness in the fall. In addition to phenological timing, mean seasonal NDVI and SIF have different responses to temperature changes throughout the growing season. We observed that both NDVI and SIF linearly increased with temperature increases throughout the spring. However, in the fall, although NDVI linearly responded to temperature increases, SIF and GPP did not linearly increase with temperature increases, implying a seasonal hysteresis of SIF and GPP in response to temperature changes across boreal ecosystems throughout their growing season. Seasonal hysteresis of vegetation at large-scales is consistent with the known phenomena that light limits boreal forest ecosystem productivity in the fall. Our results suggest that continuing measurements from satellite remote sensing of both SIF and NDVI can help to understand the differences between, and information carried by, seasonal variations vegetation structure and greenness and physiology at large-scales across the critical boreal regions.

  19. Release of proteins from intact chloroplasts induced by reactive oxygen species during biotic and abiotic stress.

    Science.gov (United States)

    Kwon, Kwang-Chul; Verma, Dheeraj; Jin, Shuangxia; Singh, Nameirakpam D; Daniell, Henry

    2013-01-01

    Plastids sustain life on this planet by providing food, feed, essential biomolecules and oxygen. Such diverse metabolic and biosynthetic functions require efficient communication between plastids and the nucleus. However, specific factors, especially large molecules, released from plastids that regulate nuclear genes have not yet been fully elucidated. When tobacco and lettuce transplastomic plants expressing GFP within chloroplasts, were challenged with Erwinia carotovora (biotic stress) or paraquat (abiotic stress), GFP was released into the cytoplasm. During this process GFP moves gradually towards the envelope, creating a central red zone of chlorophyll fluorescence. GFP was then gradually released from intact chloroplasts into the cytoplasm with an intact vacuole and no other visible cellular damage. Different stages of GFP release were observed inside the same cell with a few chloroplasts completely releasing GFP with detection of only red chlorophyll fluorescence or with no reduction in GFP fluorescence or transitional steps between these two phases. Time lapse imaging by confocal microscopy clearly identified sequence of these events. Intactness of chloroplasts during this process was evident from chlorophyll fluorescence emanated from thylakoid membranes and in vivo Chla fluorescence measurements (maximum quantum yield of photosystem II) made before or after infection with pathogens to evaluate their photosynthetic competence. Hydrogen peroxide and superoxide anion serve as signal molecules for generation of reactive oxygen species and Tiron, scavenger of superoxide anion, blocked release of GFP from chloroplasts. Significant increase in ion leakage in the presence of paraquat and light suggests changes in the chloroplast envelope to facilitate protein release. Release of GFP-RC101 (an antimicrobial peptide), which was triggered by Erwinia infection, ceased after conferring protection, further confirming this export phenomenon. These results suggest a

  20. Release of proteins from intact chloroplasts induced by reactive oxygen species during biotic and abiotic stress.

    Directory of Open Access Journals (Sweden)

    Kwang-Chul Kwon

    Full Text Available Plastids sustain life on this planet by providing food, feed, essential biomolecules and oxygen. Such diverse metabolic and biosynthetic functions require efficient communication between plastids and the nucleus. However, specific factors, especially large molecules, released from plastids that regulate nuclear genes have not yet been fully elucidated. When tobacco and lettuce transplastomic plants expressing GFP within chloroplasts, were challenged with Erwinia carotovora (biotic stress or paraquat (abiotic stress, GFP was released into the cytoplasm. During this process GFP moves gradually towards the envelope, creating a central red zone of chlorophyll fluorescence. GFP was then gradually released from intact chloroplasts into the cytoplasm with an intact vacuole and no other visible cellular damage. Different stages of GFP release were observed inside the same cell with a few chloroplasts completely releasing GFP with detection of only red chlorophyll fluorescence or with no reduction in GFP fluorescence or transitional steps between these two phases. Time lapse imaging by confocal microscopy clearly identified sequence of these events. Intactness of chloroplasts during this process was evident from chlorophyll fluorescence emanated from thylakoid membranes and in vivo Chla fluorescence measurements (maximum quantum yield of photosystem II made before or after infection with pathogens to evaluate their photosynthetic competence. Hydrogen peroxide and superoxide anion serve as signal molecules for generation of reactive oxygen species and Tiron, scavenger of superoxide anion, blocked release of GFP from chloroplasts. Significant increase in ion leakage in the presence of paraquat and light suggests changes in the chloroplast envelope to facilitate protein release. Release of GFP-RC101 (an antimicrobial peptide, which was triggered by Erwinia infection, ceased after conferring protection, further confirming this export phenomenon. These

  1. Distinct roles of the photosystem II protein PsbS and zeaxanthin in the regulation of light harvesting in plants revealed by fluorescence lifetime snapshots.

    Science.gov (United States)

    Sylak-Glassman, Emily J; Malnoë, Alizée; De Re, Eleonora; Brooks, Matthew D; Fischer, Alexandra Lee; Niyogi, Krishna K; Fleming, Graham R

    2014-12-09

    The photosystem II (PSII) protein PsbS and the enzyme violaxanthin deepoxidase (VDE) are known to influence the dynamics of energy-dependent quenching (qE), the component of nonphotochemical quenching (NPQ) that allows plants to respond to fast fluctuations in light intensity. Although the absence of PsbS and VDE has been shown to change the amount of quenching, there have not been any measurements that can detect whether the presence of these proteins alters the type of quenching that occurs. The chlorophyll fluorescence lifetime probes the excited-state chlorophyll relaxation dynamics and can be used to determine the amount of quenching as well as whether two different genotypes with the same amount of NPQ have similar dynamics of excited-state chlorophyll relaxation. We measured the fluorescence lifetimes on whole leaves of Arabidopsis thaliana throughout the induction and relaxation of NPQ for wild type and the qE mutants, npq4, which lacks PsbS; npq1, which lacks VDE and cannot convert violaxanthin to zeaxanthin; and npq1 npq4, which lacks both VDE and PsbS. These measurements show that although PsbS changes the amount of quenching and the rate at which quenching turns on, it does not affect the relaxation dynamics of excited chlorophyll during quenching. In addition, the data suggest that PsbS responds not only to ΔpH but also to the Δψ across the thylakoid membrane. In contrast, the presence of VDE, which is necessary for the accumulation of zeaxanthin, affects the excited-state chlorophyll relaxation dynamics.

  2. Optical Method for Estimating the Chlorophyll Contents in Plant Leaves.

    Science.gov (United States)

    Pérez-Patricio, Madaín; Camas-Anzueto, Jorge Luis; Sanchez-Alegría, Avisaí; Aguilar-González, Abiel; Gutiérrez-Miceli, Federico; Escobar-Gómez, Elías; Voisin, Yvon; Rios-Rojas, Carlos; Grajales-Coutiño, Ruben

    2018-02-22

    This work introduces a new vision-based approach for estimating chlorophyll contents in a plant leaf using reflectance and transmittance as base parameters. Images of the top and underside of the leaf are captured. To estimate the base parameters (reflectance/transmittance), a novel optical arrangement is proposed. The chlorophyll content is then estimated by using linear regression where the inputs are the reflectance and transmittance of the leaf. Performance of the proposed method for chlorophyll content estimation was compared with a spectrophotometer and a Soil Plant Analysis Development (SPAD) meter. Chlorophyll content estimation was realized for Lactuca sativa L., Azadirachta indica , Canavalia ensiforme , and Lycopersicon esculentum . Experimental results showed that-in terms of accuracy and processing speed-the proposed algorithm outperformed many of the previous vision-based approach methods that have used SPAD as a reference device. On the other hand, the accuracy reached is 91% for crops such as Azadirachta indica , where the chlorophyll value was obtained using the spectrophotometer. Additionally, it was possible to achieve an estimation of the chlorophyll content in the leaf every 200 ms with a low-cost camera and a simple optical arrangement. This non-destructive method increased accuracy in the chlorophyll content estimation by using an optical arrangement that yielded both the reflectance and transmittance information, while the required hardware is cheap.

  3. Optical Method for Estimating the Chlorophyll Contents in Plant Leaves

    Directory of Open Access Journals (Sweden)

    Madaín Pérez-Patricio

    2018-02-01

    Full Text Available This work introduces a new vision-based approach for estimating chlorophyll contents in a plant leaf using reflectance and transmittance as base parameters. Images of the top and underside of the leaf are captured. To estimate the base parameters (reflectance/transmittance, a novel optical arrangement is proposed. The chlorophyll content is then estimated by using linear regression where the inputs are the reflectance and transmittance of the leaf. Performance of the proposed method for chlorophyll content estimation was compared with a spectrophotometer and a Soil Plant Analysis Development (SPAD meter. Chlorophyll content estimation was realized for Lactuca sativa L., Azadirachta indica, Canavalia ensiforme, and Lycopersicon esculentum. Experimental results showed that—in terms of accuracy and processing speed—the proposed algorithm outperformed many of the previous vision-based approach methods that have used SPAD as a reference device. On the other hand, the accuracy reached is 91% for crops such as Azadirachta indica, where the chlorophyll value was obtained using the spectrophotometer. Additionally, it was possible to achieve an estimation of the chlorophyll content in the leaf every 200 ms with a low-cost camera and a simple optical arrangement. This non-destructive method increased accuracy in the chlorophyll content estimation by using an optical arrangement that yielded both the reflectance and transmittance information, while the required hardware is cheap.

  4. Chlorophyll metabolism in pollinated vs. parthenocarpic fig fruits throughout development and ripening.

    Science.gov (United States)

    Rosianskey, Yogev; Dahan, Yardena; Yadav, Sharawan; Freiman, Zohar E; Milo-Cochavi, Shira; Kerem, Zohar; Eyal, Yoram; Flaishman, Moshe A

    2016-08-01

    Expression of 13 genes encoding chlorophyll biosynthesis and degradation was evaluated. Chlorophyll degradation was differentially regulated in pollinated and parthenocarpic fig fruits, leading to earlier chlorophyll degradation in parthenocarpic fruits. Varieties of the common fig typically yield a commercial summer crop that requires no pollination, although it can be pollinated. Fig fruit pollination results in larger fruit size, greener skin and darker interior inflorescence color, and slows the ripening process compared to non-pollinated fruits. We evaluated the effect of pollination on chlorophyll content and levels of transcripts encoding enzymes of the chlorophyll metabolism in fruits of the common fig 'Brown Turkey'. We cloned and evaluated the expression of 13 different genes. All 13 genes showed high expression in the fruit skin, inflorescences and leaves, but extremely low expression in roots. Pollination delayed chlorophyll breakdown in the ripening fruit skin and inflorescences. This was correlated with the expression of genes encoding enzymes in the chlorophyll biosynthesis and degradation pathways. Expression of pheophorbide a oxygenase (PAO) was strongly negatively correlated with chlorophyll levels during ripening in pollinated fruits; along with its high expression levels in yellow leaves, this supports a pivotal role for PAO in chlorophyll degradation in figs. Normalizing expression levels of all chlorophyll metabolism genes in the pollinated and parthenocarpic fruit skin and inflorescences showed three synthesis (FcGluTR1, FcGluTR2 and FcCLS1) and three degradation (FcCLH1, FcCLH2 and FcRCCR1) genes with different temporal expression in the pollinated vs. parthenocarpic fruit skin and inflorescences. FcCAO also showed different expressions in the parthenocarpic fruit skin. Thus, chlorophyll degradation is differentially regulated in the pollinated and parthenocarpic fruit skin and inflorescences, leading to earlier and more sustained

  5. Drivers and variability of the Chl fluorescence emission spectrum from the leaf through the canopy

    Science.gov (United States)

    Magney, T. S.; Frankenberg, C.; Grossman, K.; Koehler, P.; North, G.; Porcar-Castell, A.; Stutz, J.; Fisher, J.

    2017-12-01

    Recent advances in the retrieval of solar induced chlorophyll fluorescence (SIF) from remote sensing platforms provide a significant step towards mapping instantaneous plant photosynthesis across space and time. However, our current understanding of the variability and controls on the shape of the chlorophyll fluorescence (ChlF) spectrum is limited. To address these uncertainties, we have developed instrumentation to make highly resolved spectral measurements of SIF from both leaf and canopy scales. At the leaf scale, we simultaneously collected active (PAM) and passive (675-850 nm) fluorescence with photosynthesis across a range of species and conditions; and at the canopy scale, diurnal and seasonal Fraunhofer-based SIF retrievals across the red and far-red spectrum are made at four different flux tower sites (Costa Rica, Iowa (2), and Colorado). From both of these scales we are able to determine (1) the variability in steady-state spectra across species and individuals; and (2) the environmental, functional, and structural controls on SIF. Here we report on the sensitivity of SIF spectra from a singular value decomposition analysis; and present on the mechanisms - pigment concentration, species, non-photochemical and photochemical quenching, and environmental conditions - controlling SIF variability. Further, we will discuss how an improved understanding of leaf-level variability can inform canopy level SIF, and ultimately how such information may enable proper interpretation of satellite retrievals.

  6. Chlorophyll Extraction from Microalgae: A Review on the Process Engineering Aspects

    Directory of Open Access Journals (Sweden)

    Aris Hosikian

    2010-01-01

    Full Text Available Chlorophyll is an essential compound in many everyday products. It is used not only as an additive in pharmaceutical and cosmetic products but also as a natural food colouring agent. Additionally, it has antioxidant and antimutagenic properties. This review discusses the process engineering of chlorophyll extraction from microalgae. Different chlorophyll extraction methods and chlorophyll purification techniques are evaluated. Our preliminary analysis suggests supercritical fluid extraction to be superior to organic solvent extraction. When compared to spectroscopic technique, high performance liquid chromatography was shown to be more accurate and sensitive for chlorophyll analysis. Finally, through CO2 capture and wastewater treatment, microalgae cultivation process was shown to have strong potential for mitigation of environmental impacts.

  7. Dual turn-on fluorescence signal-based controlled release system for real-time monitoring of drug release dynamics in living cells and tumor tissues.

    Science.gov (United States)

    Kong, Xiuqi; Dong, Baoli; Song, Xuezhen; Wang, Chao; Zhang, Nan; Lin, Weiying

    2018-01-01

    Controlled release systems with capabilities for direct and real-time monitoring of the release and dynamics of drugs in living systems are of great value for cancer chemotherapy. Herein, we describe a novel dual turn-on fluorescence signal-based controlled release system ( CDox ), in which the chemotherapy drug doxorubicin ( Dox ) and the fluorescent dye ( CH ) are conjugated by a hydrazone moiety, a pH-responsive cleavable linker. CDox itself shows nearly no fluorescence as the fluorescence of CH and Dox is essentially quenched by the C=N isomerization and N-N free rotation. However, when activated under acidic conditions, CDox could be hydrolyzed to afford Dox and CH , resulting in dual turn-on signals with emission peaks at 595 nm and 488 nm, respectively. Notably, CDox exhibits a desirable controlled release feature as the hydrolysis rate is limited by the steric hindrance effect from both the Dox and CH moieties. Cytotoxicity assays indicate that CDox shows much lower cytotoxicity relative to Dox , and displays higher cell inhibition rate to cancer than normal cells. With the aid of the dual turn-on fluorescence at different wavelengths, the drug release dynamics of CDox in living HepG2 and 4T-1 cells was monitored in double channels in a real-time fashion. Importantly, two-photon fluorescence imaging of CDox in living tumor tissues was also successfully performed by high-definition 3D imaging. We expect that the unique controlled release system illustrated herein could provide a powerful means to investigate modes of action of drugs, which is critical for development of much more robust and effective chemotherapy drugs.

  8. Ratiometric, visual, dual-signal fluorescent sensing and imaging of pH/copper ions in real samples based on carbon dots-fluorescein isothiocyanate composites.

    Science.gov (United States)

    Zhu, Xinxin; Jin, Hui; Gao, Cuili; Gui, Rijun; Wang, Zonghua

    2017-01-01

    In this article, a facile aqueous synthesis of carbon dots (CDs) was developed by using natural kelp as a new carbon source. Through hydrothermal carbonization of kelp juice, fluorescent CDs were prepared and the CDs' surface was modified with polyethylenimine (PEI). The PEI-modified CDs were conjugated with fluorescein isothiocyanate (FITC) to fabricate CDs-FITC composites. To exploit broad applications, the CDs-FITC composites were developed as fluorescent sensing or imaging platforms of pH and Cu 2+ . Analytical performances of the composites-based fluorescence (FL) sensors were evaluated, including visual FL imaging of pH in glass bottle, ratiometric FL sensing of pH in yogurt samples, visual FL latent fingerprint and leaf imaging detection of [Cu 2+ ], dual-signal FL sensing of [Cu 2+ ] in yogurt and human serum samples. Experimental results from ratiometric, visual, dual-signal FL sensing and imaging applications confirmed the high feasibility, accuracy, stabilization and simplicity of CDs-FITC composites-based FL sensors for the detection of pH and Cu 2+ ions in real samples. Copyright © 2016 Elsevier B.V. All rights reserved.

  9. A study on a portable fluorescence imaging system

    Science.gov (United States)

    Chang, Han-Chao; Wu, Wen-Hong; Chang, Chun-Li; Huang, Kuo-Cheng; Chang, Chung-Hsing; Chiu, Shang-Chen

    2011-09-01

    The fluorescent reaction is that an organism or dye, excited by UV light (200-405 nm), emits a specific frequency of light; the light is usually a visible or near infrared light (405-900 nm). During the UV light irradiation, the photosensitive agent will be induced to start the photochemical reaction. In addition, the fluorescence image can be used for fluorescence diagnosis and then photodynamic therapy can be given to dental diseases and skin cancer, which has become a useful tool to provide scientific evidence in many biomedical researches. However, most of the methods on acquiring fluorescence biology traces are still stay in primitive stage, catching by naked eyes and researcher's subjective judgment. This article presents a portable camera to obtain the fluorescence image and to make up a deficit from observer competence and subjective judgment. Furthermore, the portable camera offers the 375nm UV-LED exciting light source for user to record fluorescence image and makes the recorded image become persuasive scientific evidence. In addition, when the raising the rate between signal and noise, the signal processing module will not only amplify the fluorescence signal up to 70 %, but also decrease the noise significantly from environmental light on bill and nude mouse testing.

  10. Frequency division multiplexed multi-color fluorescence microscope system

    Science.gov (United States)

    Le, Vu Nam; Yang, Huai Dong; Zhang, Si Chun; Zhang, Xin Rong; Jin, Guo Fan

    2017-10-01

    Grayscale camera can only obtain gray scale image of object, while the multicolor imaging technology can obtain the color information to distinguish the sample structures which have the same shapes but in different colors. In fluorescence microscopy, the current method of multicolor imaging are flawed. Problem of these method is affecting the efficiency of fluorescence imaging, reducing the sampling rate of CCD etc. In this paper, we propose a novel multiple color fluorescence microscopy imaging method which based on the Frequency division multiplexing (FDM) technology, by modulating the excitation lights and demodulating the fluorescence signal in frequency domain. This method uses periodic functions with different frequency to modulate amplitude of each excitation lights, and then combine these beams for illumination in a fluorescence microscopy imaging system. The imaging system will detect a multicolor fluorescence image by a grayscale camera. During the data processing, the signal obtained by each pixel of the camera will be processed with discrete Fourier transform, decomposed by color in the frequency domain and then used inverse discrete Fourier transform. After using this process for signals from all of the pixels, monochrome images of each color on the image plane can be obtained and multicolor image is also acquired. Based on this method, this paper has constructed and set up a two-color fluorescence microscope system with two excitation wavelengths of 488 nm and 639 nm. By using this system to observe the linearly movement of two kinds of fluorescent microspheres, after the data processing, we obtain a two-color fluorescence dynamic video which is consistent with the original image. This experiment shows that the dynamic phenomenon of multicolor fluorescent biological samples can be generally observed by this method. Compared with the current methods, this method can obtain the image signals of each color at the same time, and the color video's frame

  11. An optimal thermal condition for maximal chlorophyll extraction

    Directory of Open Access Journals (Sweden)

    Fu Jia-Jia

    2017-01-01

    Full Text Available This work describes an environmentally friendly process for chlorophyll extraction from bamboo leaves. Shaking water bath and ultrasound cleaner are adopted in this technology, and the influence of temperature of the water bath and ultrasonic cleaner is evaluated. Results indicated that there is an optimal condition for maximal yield of chlorophyll.

  12. Regional ocean-colour chlorophyll algorithms for the Red Sea

    KAUST Repository

    Brewin, Robert J.W.; Raitsos, Dionysios E.; Dall'Olmo, Giorgio; Zarokanellos, Nikolaos; Jackson, Thomas; Racault, Marie-Fanny; Boss, Emmanuel S.; Sathyendranath, Shubha; Jones, Burton; Hoteit, Ibrahim

    2015-01-01

    an ocean-colour model for the Red Sea, parameterised to data collected during the Tara Oceans expedition, that estimates remote-sensing reflectance as a function of chlorophyll concentration. We used the Red Sea model to tune the standard chlorophyll

  13. Efficiency of portable chlorophyll meters in assessing the nutritional status of wheat plants

    Directory of Open Access Journals (Sweden)

    Alessana F. Schlichting

    2015-12-01

    Full Text Available ABSTRACT The objective of this study was to verify the efficiency of two portable chlorophyll meters (Minolta SPAD® 502 and Falker ClorofiLOG® 1030 in assessing the nutritional status of wheat plants, correlating the indices from the devices and the direct determination of chlorophyll content with the concentration of nitrogen (N in the plant. The experiment was conducted in a greenhouse, in pots with 5 dm3 of Oxisol, in a completely randomized design, with six N doses (0, 80, 160, 240, 320 and 400 mg dm-3 and five replicates. At 47 days after emergence, the readings of SPAD and Falker indices and the quantification of chlorophyll content and N concentration in wheat plants were performed, as well as analysis of variance and correlation test, both at 0.05 probability level. The chlorophyll meters Minolta SPAD® 502 and Falker ClorofiLOG® 1030 do not differ with respect to the indirect determination of chlorophyll in wheat plants. The Falker chlorophyll index was statistically equal to the chlorophyll content. Indirect chlorophyll indices and chlorophyll content showed a high correlation with the N concentration in the plant.

  14. [Analysis of fluorescence spectrum of petroleum-polluted water].

    Science.gov (United States)

    Huang, Miao-Fen; Song, Qing-Jun; Xing, Xu-Feng; Jian, Wei-Jun; Liu, Yuan; Zhao, Zu-Long

    2014-09-01

    In four ratio experiments, natural waters, sampled from the mountain reservoir and the sea water around Dalian city, were mixed with the sewage from petroleum refinery and petroleum exploitation plants. The fluorescence spectra of water samples containing only chromophoric dissolved organic matters(CDOM), samples containing only petroleum, and samples containing a mixture of petroleum and CDOM were analyzed, respectively. The purpose of this analysis is to provide a basis for determining the contribution of petroleum substances and CDOM to the total absorption coefficient of the petroleum-contaminated water by using fluorescence technique. The results showed that firstly, CDOM in seawater had three main fluorescence peaks at Ex: 225-230 nm/Em: 320-330 nm, Ex: 280 nm/Em: 340 nm and Ex: 225-240 nm/Em: 430-470 nm, respectively, and these may arise from the oceanic chlorophyll. CDOM in natural reservoir water had two main fluorescence peaks at EX: 240- 260 nm/Em: 420-450 nm and Ex: 310~350 nm/Em: 420--440 nm, respectively, and these may arise from the terrestrial sources; secondly, the water samples containing only petroleum extracted with n-hexane had one to three fluorescence spectral peaksat Ex: 220-240 nm/Em: 320-340 nm, Ex: 270-290 nm/Em: 310-340 nm and Ex: 220-235 nm/Em: 280-310 nm, respectively, caused by their hydrocarbon component; finally, the water samples containing both petroleum and CDOM showed a very strong fluorescence peak at Ex: 230-250 nm/Em: 320-370 nm, caused by the combined effect of CDOM and petroleum hydrocarbons.

  15. Piriformospora indica inoculation alleviates the adverse effect of NaCl stress on growth, gas exchange and chlorophyll fluorescence in tomato (Solanum lycopersicum L.).

    Science.gov (United States)

    Ghorbani, A; Razavi, S M; Ghasemi Omran, V O; Pirdashti, H

    2018-03-25

    Salinity is now an increasingly serious environmental issue that affects the growth and yield of many plants. In the present work, the influence of inoculation with the symbiotic fungus, Piriformospora indica, on gas exchange, water potential, osmolyte content, Na/K ratio and chlorophyll fluorescence of tomato plants under three salinity levels (0, 50, 100 and 150 mm NaCl) and three time periods (5, 10 and 15 days after exposure to salt) was investigated. Results indicate that P. indica inoculation improved growth parameters of tomato under salinity stress. This symbiotic fungus significantly increased photosynthetic pigment content under salinity, and more proline and glycine betaine accumulated in inoculated roots than in non-inoculated roots. P. indica further significantly improved K + content and reduced Na + level under salinity treatment. After inoculation with the endophytic fungus, leaf physiological parameters, such as water potential, net photosynthesis, stomatal conductance and transpiration, were all higher under the salt concentrations and durations compared with controls without P. indica. With increasing salt level and salt treatment duration, values of F 0 and qP increased but F m , F v /F m , F' v /F' m and NPQ declined in the controls, while inoculation with P. indica improved these values. The results indicate that the negative effects of NaCl on tomato plants were alleviated after P. indica inoculation, probably by improving physiological parameters such as water status and photosynthesis. © 2018 German Society for Plant Sciences and The Royal Botanical Society of the Netherlands.

  16. Monitoring and Assessing the 2012 Drought in the Great Plains: Analyzing Satellite-Retrieved Solar-Induced Chlorophyll Fluorescence, Drought Indices, and Gross Primary Production

    Directory of Open Access Journals (Sweden)

    Siheng Wang

    2016-01-01

    Full Text Available We examined the relationship between satellite measurements of solar-induced chlorophyll fluorescence (SIF and several meteorological drought indices, including the multi-time-scale standard precipitation index (SPI and the Palmer drought severity index (PDSI, to evaluate the potential of using SIF to monitor and assess drought. We found significant positive relationships between SIF and drought indices during the growing season (from June to September. SIF was found to be more sensitive to short-term SPIs (one or two months and less sensitive to long-term SPI (three months than were the normalized difference vegetation index (NDVI or the normalized difference water index (NDWI. Significant correlations were found between SIF and PDSI during the growing season for the Great Plains. We found good consistency between SIF and flux-estimated gross primary production (GPP for the years studied, and synchronous declines of SIF and GPP in an extreme drought year (2012. We used SIF to monitor and assess the drought that occurred in the Great Plains during the summer of 2012, and found that although a meteorological drought was experienced throughout the Great Plains from June to September, the western area experienced more agricultural drought than the eastern area. Meanwhile, SIF declined more significantly than NDVI during the peak growing season. Yet for senescence, during which time the reduction of NDVI still went on, the reduction of SIF was eased. Our work provides an alternative to traditional reflectance-based vegetation or drought indices for monitoring and assessing agricultural drought.

  17. Chlorophyll formation and phytochrome

    NARCIS (Netherlands)

    Raven, C.W.

    1973-01-01

    The rôle of phytochrome in the regeneration of protochlorophyll (Pchl) in darkness following short exposures to light, as well as in the accumulation of chlorophyll- a (Chl- a ) in continuous light in previously dark-grown seedlings of pea, bean,

  18. The humic acid-induced changes in the water status, chlorophyll fluorescence and antioxidant defense systems of wheat leaves with cadmium stress.

    Science.gov (United States)

    Ozfidan-Konakci, Ceyda; Yildiztugay, Evren; Bahtiyar, Mustafa; Kucukoduk, Mustafa

    2018-07-15

    The using of bio-stimulant in plants grown under stress conditions for enhancing nutrition efficiency and crop quality traits is an effective approach. One of the bio-stimulants, humus material, is defined as humic acid (HA). HA application as a promotion of plant growth to plants grown in the heavy metals-contaminated soils has promised hope in terms of effects on plants but the its limiting effect is the application dose. Therefore, the wheat seedlings were grown in hydroponic culture for 21 d and the various concentrations of humic acid (HA; 750 or 1500 mg L -1 ) were treated alone or in combination with cadmium (Cd) stress (100 or 200 μM) for 7 d. The results showed that after Cd stress treatment, water content (RWC), osmotic potential (Ψ Π ) and chlorophyll fluorescence parameters decreased and proline content (Pro) increased for 7 d. In spite of activated peroxidase (POX) and ascorbate peroxidase (APX), stress induced the toxic levels of hydrogen peroxide (H 2 O 2 ) accumulation. Cd stress triggered lipid peroxidation (TBARS content). HA application successfully eliminated the negative effects of stress on RWC, Ψ Π and photosynthetic parameters. In the presence of HA under stress, the increased activation of superoxide dismutase (SOD), catalase (CAT) and NADPH-oxidase (NOX) enzymes and ascorbate, glutathione and GSH/GSSG ratio observed. Only 750 mg L -1 HA under stress conditions induced the activities of monodehydroascorbate reductase (MDHAR) and dehydroascorbate reductase (DHAR), and dehydroascorbate (DHA) content. After the combined application of HA and Cd stress, the low contents of H 2 O 2 and TBARS maintained in wheat leaves. Hence, HA successfully eliminated the toxicity of Cd stress by modulating the water status, photosynthetic apparatus and antioxidant activity in wheat leaves. Copyright © 2018 Elsevier Inc. All rights reserved.

  19. Modeling the influence of the BRDF characteristics of vegetation on the retrieval of solar-induced chlorophyll fluorescence under different illumination conditions

    Science.gov (United States)

    Liu, Xinjie; Liu, Liangyun

    2017-04-01

    The Fraunhofer Line Discrimination (FLD) principle is the main approach used for the retrieval of solar-induced chlorophyll fluorescence (SIF). The basic assumption of the FLD principle is that the apparent reflectance spectra without SIF in-filling are smooth in the region of the absorption bands. However, in fact, this assumption is not valid due to the so-called "direct radiation in-filling" effect caused by the non-linear contribution of direct and diffuse radiation at the oxygen absorption bands, which are widely used for ground-based SIF retrieval. In this study, we first analyzed the physical mechanism of the direct radiation in-filling effect on the oxygen absorption bands and found that the bias in the SIF retrieval caused by the direct radiation in-filling effect at the O2-A band was less than 20% based on the use of a simulated dataset. Secondly, we established a simple correction model of the direct radiation in-filling effect. We found that the direct radiation in-filling effect at the O2-A band was directly proportional to the difference between the reflectance of the direct and diffuse radiation, and that the coefficient of proportionality was well correlated with the diffuse-to-global radiation ratio in the form of a quadratic function. The coefficient of determination (R-squared) for this correlation was 0.97. Finally, the model was validated using both simulated and field datasets. The validation results show that the bias in the SIF retrieval caused by the direct radiation in-filling effect can be efficiently corrected using the model proposed in this paper. This study thus provides a possible approach to estimating and correcting for the direct radiation-infilling effect using prior knowledge of the BRDF characteristics of direct and diffuse radiation for specific targets.

  20. Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium

    NARCIS (Netherlands)

    Pfreundt, U.; Stal, L.J.; Voss, B.; Hess, W.R.

    2012-01-01

    Marine cyanobacteria of the genus Acaryochloris are the only known organisms that use chlorophyll d as a photosynthetic pigment. However, based on chemical sediment analyses, chlorophyll d has been recognized to be widespread in oceanic and lacustrine environments. Therefore it is highly relevant to

  1. Relationship between chlorophyll a concentration, light attenuation and diving depth of the Southern elephant seal Mirounga leonina.

    Directory of Open Access Journals (Sweden)

    Thomas Jaud

    Full Text Available Recently, a number of Antarctic marine environmental studies have used oceanographic parameters collected from instrumented top predators for ecological and physical information. Phytoplankton concentration is generally quantified through active measurement of chlorophyll fluorescence. In this study, light absorption coefficient (K(0.75 was used as an indicator of phytoplankton concentration. This measurement, easy to obtain and requiring low electric power, allows for assessing of the fine scale horizontal structuring of phytoplankton. As part of this study, Southern elephant seals (SES were simultaneously equipped with a fluorometer and a light logger. Along the SES tracks, variations in K(0.75 were strongly correlated with chlorophyll, a concentration measured by the fluorometer within the euphotic layer. With regards to SES foraging behaviour, bottom depth of the seal's dive was highly dependent on light intensity at 150 m, indicating that the vertical distribution of SES's prey such as myctophids is tightly related to light level. Therefore, change in phytoplankton concentration may not only have a direct effect on SES's prey abundance but may also determine their vertical accessibility with likely consequences on SES foraging efficiency.

  2. Gamma ray induced chlorophyll and morphological mutants in grasspea

    International Nuclear Information System (INIS)

    Das, P.K.; Kundagrami, S.

    2000-01-01

    Higher dose of gamma ray treatment such as 30 kR promoted larger chlorophyll as well as morphological mutation frequency and spectrum. In both M 1 and M 2 generation marginata significantly out numbered other types of chlorophyll mutations. On the other hand, along morphological mutations stunted growth types were recovered more frequently. Both the genotypes Nirmal and P-24 differed greatly for their mutagenic specificity. In both M 1 and M 2 generation Nirmal recorded higher chlorophyll and morphological mutation frequency and spectrum indicating differential genotype response to different dosages of gamma ray treatment. (author)

  3. Applications of optical fiber to the remote fluorescence analysis

    International Nuclear Information System (INIS)

    Shin, Jang Soo; Kim, Duck Hueon; Lee, Soo Ho

    1992-12-01

    The laser fluorometer developed in 1987 has been used in real circumstances for trace uranium analysis. And, we have been trying to improve the instrument to be able to apply in analytical circumstances of remote measurement using optical fiber. The N 2 laser beam and the resulting fluorescence light could be successfully transmitted through a quartz-made optical fiber. The wavelength resolution and the fluorescence decay time resolution induced by pulsed N 2 laser were used to the uranium fluorescence analyses. The fluorescence of uranium in nitric acid medium was measured successfully using the system. The fluorescence signal was analysed using simplex method which is useful to deconvolute the mixed signals. An analytical method using thermal lens effect was developed. The method will be a complementary one for the fluorescence measurement. (Author)

  4. Improving x-ray fluorescence signal for benchtop polychromatic cone-beam x-ray fluorescence computed tomography by incident x-ray spectrum optimization: a Monte Carlo study.

    Science.gov (United States)

    Manohar, Nivedh; Jones, Bernard L; Cho, Sang Hyun

    2014-10-01

    To develop an accurate and comprehensive Monte Carlo (MC) model of an experimental benchtop polychromatic cone-beam x-ray fluorescence computed tomography (XFCT) setup and apply this MC model to optimize incident x-ray spectrum for improving production/detection of x-ray fluorescence photons from gold nanoparticles (GNPs). A detailed MC model, based on an experimental XFCT system, was created using the Monte Carlo N-Particle (MCNP) transport code. The model was validated by comparing MC results including x-ray fluorescence (XRF) and scatter photon spectra with measured data obtained under identical conditions using 105 kVp cone-beam x-rays filtered by either 1 mm of lead (Pb) or 0.9 mm of tin (Sn). After validation, the model was used to investigate the effects of additional filtration of the incident beam with Pb and Sn. Supplementary incident x-ray spectra, representing heavier filtration (Pb: 2 and 3 mm; Sn: 1, 2, and 3 mm) were computationally generated and used with the model to obtain XRF/scatter spectra. Quasimonochromatic incident x-ray spectra (81, 85, 90, 95, and 100 keV with 10 keV full width at half maximum) were also investigated to determine the ideal energy for distinguishing gold XRF signal from the scatter background. Fluorescence signal-to-dose ratio (FSDR) and fluorescence-normalized scan time (FNST) were used as metrics to assess results. Calculated XRF/scatter spectra for 1-mm Pb and 0.9-mm Sn filters matched (r ≥ 0.996) experimental measurements. Calculated spectra representing additional filtration for both filter materials showed that the spectral hardening improved the FSDR at the expense of requiring a much longer FNST. In general, using Sn instead of Pb, at a given filter thickness, allowed an increase of up to 20% in FSDR, more prominent gold XRF peaks, and up to an order of magnitude decrease in FNST. Simulations using quasimonochromatic spectra suggested that increasing source x-ray energy, in the investigated range of 81-100 ke

  5. Hyperspectral small animal fluorescence imaging: spectral selection imaging

    Science.gov (United States)

    Leavesley, Silas; Jiang, Yanan; Patsekin, Valery; Hall, Heidi; Vizard, Douglas; Robinson, J. Paul

    2008-02-01

    Molecular imaging is a rapidly growing area of research, fueled by needs in pharmaceutical drug-development for methods for high-throughput screening, pre-clinical and clinical screening for visualizing tumor growth and drug targeting, and a growing number of applications in the molecular biology fields. Small animal fluorescence imaging employs fluorescent probes to target molecular events in vivo, with a large number of molecular targeting probes readily available. The ease at which new targeting compounds can be developed, the short acquisition times, and the low cost (compared to microCT, MRI, or PET) makes fluorescence imaging attractive. However, small animal fluorescence imaging suffers from high optical scattering, absorption, and autofluorescence. Much of these problems can be overcome through multispectral imaging techniques, which collect images at different fluorescence emission wavelengths, followed by analysis, classification, and spectral deconvolution methods to isolate signals from fluorescence emission. We present an alternative to the current method, using hyperspectral excitation scanning (spectral selection imaging), a technique that allows excitation at any wavelength in the visible and near-infrared wavelength range. In many cases, excitation imaging may be more effective at identifying specific fluorescence signals because of the higher complexity of the fluorophore excitation spectrum. Because the excitation is filtered and not the emission, the resolution limit and image shift imposed by acousto-optic tunable filters have no effect on imager performance. We will discuss design of the imager, optimizing the imager for use in small animal fluorescence imaging, and application of spectral analysis and classification methods for identifying specific fluorescence signals.

  6. S - and N-alkylating agents diminish the fluorescence of fluorescent dye-stained DNA.

    Science.gov (United States)

    Giesche, Robert; John, Harald; Kehe, Kai; Schmidt, Annette; Popp, Tanja; Balzuweit, Frank; Thiermann, Horst; Gudermann, Thomas; Steinritz, Dirk

    2017-01-25

    Sulfur mustard (SM), a chemical warfare agent, causes DNA alkylation, which is believed to be the main cause of its toxicity. SM DNA adducts are commonly used to verify exposure to this vesicant. However, the required analytical state-of-the-art mass-spectrometry methods are complex, use delicate instruments, are not mobile, and require laboratory infrastructure that is most likely not available in conflict zones. Attempts have thus been made to develop rapid detection methods that can be used in the field. The analysis of SM DNA adducts (HETE-G) by immunodetection is a convenient and suitable method. For a diagnostic assessment, HETE-G levels must be determined in relation to the total DNA in the sample. Total DNA can be easily visualized by the use of fluorescent DNA dyes. This study examines whether SM and related compounds affect total DNA staining, an issue that has not been investigated before. After pure DNA was extracted from human keratinocytes (HaCaT cells), DNA was exposed to different S- and N-alkylating agents. Our experiments revealed a significant, dose-dependent decrease in the fluorescence signal of fluorescent dye-stained DNA after exposure to alkylating agents. After mass spectrometry and additional fluorescence measurements ruled out covalent modifications of ethidium bromide (EthBr) by SM, we assumed that DNA crosslinks caused DNA condensation and thereby impaired access of the fluorescent dyes to the DNA. DNA digestion by restriction enzymes restored fluorescence, a fact that strengthened our hypothesis. However, monofunctional agents, which are unable to crosslink DNA, also decreased the fluorescence signal. In subsequent experiments, we demonstrated that protons produced during DNA alkylation caused a pH decrease that was found responsible for the reduction in fluorescence. The use of an appropriate buffer system eliminated the adverse effect of alkylating agents on DNA staining with fluorescent dyes. An appropriate buffer system is thus

  7. Culture of a high-chlorophyll-producing and halotolerant Chlorella vulgaris.

    Science.gov (United States)

    Nakanishi, Koichi; Deuchi, Keiji

    2014-05-01

    In order to increase the value of freshwater algae as raw ingredients for health foods and feed for seawater-based farmed fish, we sought to breed high-chlorophyll halotolerant Chlorella with the objective of generating strains with both high chlorophyll concentrations (≥ 5%) and halotolerance (up to 1% NaCl). We used the Chlorella vulgaris K strain in our research institute culture collection and induced mutations with UV irradiation and acriflavine which is known to effect mutations of mitochondrial DNA that are associated with chlorophyll production. Screenings were conducted on seawater-based "For Chlorella spp." (FC) agar medium, and dark-green-colored colonies were visually selected by macroscopic inspection. We obtained a high-chlorophyll halotolerant strain (designated C. vulgaris M-207A7) that had a chlorophyll concentration of 6.7% (d.m.), a level at least three-fold higher than that of K strain. This isolate also exhibited a greater survival rate in seawater that of K strain. Copyright © 2013 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  8. Correlated cryo-fluorescence and cryo-electron microscopy with high spatial precision and improved sensitivity

    International Nuclear Information System (INIS)

    Schorb, Martin; Briggs, John A.G.

    2014-01-01

    Performing fluorescence microscopy and electron microscopy on the same sample allows fluorescent signals to be used to identify and locate features of interest for subsequent imaging by electron microscopy. To carry out such correlative microscopy on vitrified samples appropriate for structural cryo-electron microscopy it is necessary to perform fluorescence microscopy at liquid-nitrogen temperatures. Here we describe an adaptation of a cryo-light microscopy stage to permit use of high-numerical aperture objectives. This allows high-sensitivity and high-resolution fluorescence microscopy of vitrified samples. We describe and apply a correlative cryo-fluorescence and cryo-electron microscopy workflow together with a fiducial bead-based image correlation procedure. This procedure allows us to locate fluorescent bacteriophages in cryo-electron microscopy images with an accuracy on the order of 50 nm, based on their fluorescent signal. It will allow the user to precisely and unambiguously identify and locate objects and events for subsequent high-resolution structural study, based on fluorescent signals. - Highlights: • Workflow for correlated cryo-fluorescence and cryo-electron microscopy. • Cryo-fluorescence microscopy setup incorporating a high numerical aperture objective. • Fluorescent signals located in cryo-electron micrographs with 50 nm spatial precision

  9. Correlated cryo-fluorescence and cryo-electron microscopy with high spatial precision and improved sensitivity

    Energy Technology Data Exchange (ETDEWEB)

    Schorb, Martin [Structural and Computational Biology Unit, European Molecular Biology Laboratory, D-69117 Heidelberg (Germany); Briggs, John A.G., E-mail: john.briggs@embl.de [Structural and Computational Biology Unit, European Molecular Biology Laboratory, D-69117 Heidelberg (Germany); Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, D-69117 Heidelberg (Germany)

    2014-08-01

    Performing fluorescence microscopy and electron microscopy on the same sample allows fluorescent signals to be used to identify and locate features of interest for subsequent imaging by electron microscopy. To carry out such correlative microscopy on vitrified samples appropriate for structural cryo-electron microscopy it is necessary to perform fluorescence microscopy at liquid-nitrogen temperatures. Here we describe an adaptation of a cryo-light microscopy stage to permit use of high-numerical aperture objectives. This allows high-sensitivity and high-resolution fluorescence microscopy of vitrified samples. We describe and apply a correlative cryo-fluorescence and cryo-electron microscopy workflow together with a fiducial bead-based image correlation procedure. This procedure allows us to locate fluorescent bacteriophages in cryo-electron microscopy images with an accuracy on the order of 50 nm, based on their fluorescent signal. It will allow the user to precisely and unambiguously identify and locate objects and events for subsequent high-resolution structural study, based on fluorescent signals. - Highlights: • Workflow for correlated cryo-fluorescence and cryo-electron microscopy. • Cryo-fluorescence microscopy setup incorporating a high numerical aperture objective. • Fluorescent signals located in cryo-electron micrographs with 50 nm spatial precision.

  10. Estimating chlorophyll content from Eucalyptus dunnii leaves by reflectance values

    Directory of Open Access Journals (Sweden)

    João Alexandre Lopes Dranski

    2016-06-01

    Full Text Available This study aimed to estimate photosynthetic pigments contents from leaves of Eucalyptus dunni Maiden based on values of reflectance spectra of red, green and blue colors obtained with a digital color analyzer. We collected fifty leaves from the lower third of the crown of twenty trees including young as well as mature leaves. From each leaf an area of 14 cm2 of the leaf blade was cut in which we measured reflectance values on the red, green and blue spectra with a portable digital colorimeter, obtained relative index of chlorophyll with a SPAD – 502 and determined the content of the chlorophyll a, b, and a + b by classic method of solvent extraction. We submitted the data to multiple linear regression and nonlinear analysis at 5% of error probability. It was evaluated the occurrence of multicollinearity. The negative exponential model resulted in good fit when data from red spectrum was used for chlorophyll a, green spectrum for chlorophyll b and a + b, making possible correlation coefficients between the estimated values and the extracted above 0.85. Except for the chlorophyll a content, the accuracy in estimates of photosynthetic pigments were higher than estimated by the chlorophyll meter, even with linearity between methods. Therefore, it is possible to estimate photosynthetic pigments on E. dunni leaves through values of red and green wavelengths from a digital color analyser.

  11. Enzyme-assisted extraction of stabilized chlorophyll from spinach.

    Science.gov (United States)

    Özkan, Gülay; Ersus Bilek, Seda

    2015-06-01

    Zinc complex formation with chlorophyll derivatives in spinach pulp was studied by adding 300ppm Zn(2+) for production of stable food colorant, followed by the heating at 110°C for 15min. Zinc complex formation increased at pH values of 7.0 or greater. Pectinex Ultra SP-L was selected for enzyme-assisted release of zinc-chlorophyll derivatives from spinach pulp. Effect of enzyme concentration (1-9%), treatment temperature (30-60°C), and time (30-210min) on total chlorophyll content (TCC) were optimized using response surface methodology. A quadratic regression model (R(2)=0.9486) was obtained from the experimental design. Optimum treatment conditions were 8% enzyme concentration, 45°C, and 30min, which yielded a 50.747mgTCC/100g spinach pulp. Enzymatic treatment was followed by solvent extraction with ethanol at a solvent-to-sample ratio of 2.5:1 at 60°C for 45min for the highest TCC recovery. Pretreatment with enzyme and extraction in ethanol resulted in 39% increase in Zn-chlorophyll derivative yield. Copyright © 2014 Elsevier Ltd. All rights reserved.

  12. Integrating Biology into the General Chemistry Laboratory: Fluorometric Analysis of Chlorophyll "a"

    Science.gov (United States)

    Wesolowski, Meredith C.

    2014-01-01

    A laboratory experiment that introduces fluorometry of chlorophyll "a" at the general chemistry level is described. The use of thin-layer chromatography to isolate chlorophyll "a" from spirulina and leaf matter enables quantification of small amounts of chlorophyll "a" via fluorometry. Student results were reasonably…

  13. EmpiricalValues_Chlorophyll_GrandComposite

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This personal geodatabase contains raster images of chlorophyll concentrations in the Gulf of Maine. These raster images are a composite of several years (1997-2005)...

  14. Ultrasensitive fluorescence immunoassay for detection of ochratoxin A using catalase-mediated fluorescence quenching of CdTe QDs

    Science.gov (United States)

    Huang, Xiaolin; Zhan, Shengnan; Xu, Hengyi; Meng, Xianwei; Xiong, Yonghua; Chen, Xiaoyuan

    2016-04-01

    Herein, for the first time we report an improved competitive fluorescent enzyme linked immunosorbent assay (ELISA) for the ultrasensitive detection of ochratoxin A (OTA) by using hydrogen peroxide (H2O2)-induced fluorescence quenching of mercaptopropionic acid-modified CdTe quantum dots (QDs). In this immunoassay, catalase (CAT) was labeled with OTA as a competitive antigen to connect the fluorescence signals of the QDs with the concentration of the target. Through the combinatorial use of H2O2-induced fluorescence quenching of CdTe QDs as a fluorescence signal output and the ultrahigh catalytic activity of CAT to H2O2, our proposed method could be used to perform a dynamic linear detection of OTA ranging from 0.05 pg mL-1 to 10 pg mL-1. The half maximal inhibitory concentration was 0.53 pg mL-1 and the limit of detection was 0.05 pg mL-1. These values were approximately 283- and 300-folds lower than those of horseradish peroxidase (HRP)-based conventional ELISA, respectively. The reported method is accurate, highly reproducible, and specific against other mycotoxins in agricultural products as well. In summary, the developed fluorescence immunoassay based on H2O2-induced fluorescence quenching of CdTe QDs can be used for the rapid and highly sensitive detection of mycotoxins or haptens in food safety monitoring.Herein, for the first time we report an improved competitive fluorescent enzyme linked immunosorbent assay (ELISA) for the ultrasensitive detection of ochratoxin A (OTA) by using hydrogen peroxide (H2O2)-induced fluorescence quenching of mercaptopropionic acid-modified CdTe quantum dots (QDs). In this immunoassay, catalase (CAT) was labeled with OTA as a competitive antigen to connect the fluorescence signals of the QDs with the concentration of the target. Through the combinatorial use of H2O2-induced fluorescence quenching of CdTe QDs as a fluorescence signal output and the ultrahigh catalytic activity of CAT to H2O2, our proposed method could be used to

  15. Particle Image Velocimetry Applications Using Fluorescent Dye-Doped Particles

    Science.gov (United States)

    Petrosky, Brian J.; Maisto, Pietro; Lowe, K. Todd; Andre, Matthieu A.; Bardet, Philippe M.; Tiemsin, Patsy I.; Wohl, Christopher J.; Danehy, Paul M.

    2015-01-01

    Polystyrene latex sphere particles are widely used to seed flows for velocimetry techniques such as Particle Image Velocimetry (PIV) and Laser Doppler Velocimetry (LDV). These particles may be doped with fluorescent dyes such that signals spectrally shifted from the incident laser wavelength may be detected via Laser Induced Fluorescence (LIF). An attractive application of the LIF signal is achieving velocimetry in the presence of strong interference from laser scatter, opening up new research possibilities very near solid surfaces or at liquid/gas interfaces. Additionally, LIF signals can be used to tag different fluid streams to study mixing. While fluorescence-based PIV has been performed by many researchers for particles dispersed in water flows, the current work is among the first in applying the technique to micron-scale particles dispersed in a gas. A key requirement for such an application is addressing potential health hazards from fluorescent dyes; successful doping of Kiton Red 620 (KR620) has enabled the use of this relatively safe dye for fluorescence PIV for the first time. In this paper, basic applications proving the concept of PIV using the LIF signal from KR620-doped particles are exhibited for a free jet and a twophase flow apparatus. Results indicate that while the fluorescence PIV techniques are roughly 2 orders of magnitude weaker than Mie scattering, they provide a viable method for obtaining data in flow regions previously inaccessible via standard PIV. These techniques have the potential to also complement Mie scattering signals, for example in multi-stream and/or multi-phase experiments.

  16. Heme Gazing: Illuminating Eukaryotic Heme Trafficking, Dynamics, and Signaling with Fluorescent Heme Sensors.

    Science.gov (United States)

    Hanna, David A; Martinez-Guzman, Osiris; Reddi, Amit R

    2017-04-04

    Heme (iron protoporphyrin IX) is an essential protein prosthetic group and signaling molecule required for most life on Earth. All heme-dependent processes require the dynamic and rapid mobilization of heme from sites of synthesis or uptake to hemoproteins present in virtually every subcellular compartment. The cytotoxicity and hydrophobicity of heme necessitate that heme mobilization be carefully controlled to mitigate the deleterious effects of this essential toxin. Indeed, a number of disorders, including certain cancers, cardiovascular diseases, and aging and age-related neurodegenerative diseases, are tied to defects in heme homeostasis. However, the molecules and mechanisms that mediate heme transport and trafficking, and the dynamics of these processes, are poorly understood. This is in large part due to the lack of physical tools for probing cellular heme. Herein, we discuss the recent development of fluorescent probes that can monitor and image kinetically labile heme with respect to its mobilization and role in signaling. In particular, we will highlight how heme gazing with these tools can uncover new heme trafficking factors upon being integrated with genetic screens and illuminate the concentration, subcellular distribution, and dynamics of labile heme in various physiological contexts. Altogether, the monitoring of labile heme, along with recent biochemical and cell biological studies demonstrating the reversible regulation of certain cellular processes by heme, is challenging us to reconceptualize heme from being a static cofactor buried in protein active sites to a dynamic and mobile signaling molecule.

  17. A Saponification Method for Chlorophyll Removal from Microalgae Biomass as Oil Feedstock

    Directory of Open Access Journals (Sweden)

    Tao Li

    2016-09-01

    Full Text Available Microalgae oil is an optimal feedstock for nutraceutical, pharmaceutical and biodiesel production, but its high levels of chlorophyll limit its large-scale application. To date, few effective approaches have been developed to remove chlorophyll from microalgae oil. The main purpose of this study was to present a preprocessing method of algae oil feedstock (Scenedesmus to remove chlorophyll by saponification. The results showed that 96% of chlorophyll in biomass was removed. High quality orange transparent oil could be extracted from the chlorophyll reduced biomass. Specifically, the proportion of neutral lipids and saturation levels of fatty acids increased, and the pigments composition became carotenoids-based. The critical parameters of chlorophyll reduced biodiesel conformed to the standards of the USA, China and EU. Sodium copper chlorophyllin could be prepared from the bleaching effluent. The results presented herein offer a useful pathway to improve the quality of microalgae oil and reduce the cost of microalgae biodiesel.

  18. A Saponification Method for Chlorophyll Removal from Microalgae Biomass as Oil Feedstock

    Science.gov (United States)

    Li, Tao; Xu, Jin; Wu, Hualian; Wang, Guanghua; Dai, Shikun; Fan, Jiewei; He, Hui; Xiang, Wenzhou

    2016-01-01

    Microalgae oil is an optimal feedstock for nutraceutical, pharmaceutical and biodiesel production, but its high levels of chlorophyll limit its large-scale application. To date, few effective approaches have been developed to remove chlorophyll from microalgae oil. The main purpose of this study was to present a preprocessing method of algae oil feedstock (Scenedesmus) to remove chlorophyll by saponification. The results showed that 96% of chlorophyll in biomass was removed. High quality orange transparent oil could be extracted from the chlorophyll reduced biomass. Specifically, the proportion of neutral lipids and saturation levels of fatty acids increased, and the pigments composition became carotenoids-based. The critical parameters of chlorophyll reduced biodiesel conformed to the standards of the USA, China and EU. Sodium copper chlorophyllin could be prepared from the bleaching effluent. The results presented herein offer a useful pathway to improve the quality of microalgae oil and reduce the cost of microalgae biodiesel. PMID:27618070

  19. A Saponification Method for Chlorophyll Removal from Microalgae Biomass as Oil Feedstock.

    Science.gov (United States)

    Li, Tao; Xu, Jin; Wu, Hualian; Wang, Guanghua; Dai, Shikun; Fan, Jiewei; He, Hui; Xiang, Wenzhou

    2016-09-07

    Microalgae oil is an optimal feedstock for nutraceutical, pharmaceutical and biodiesel production, but its high levels of chlorophyll limit its large-scale application. To date, few effective approaches have been developed to remove chlorophyll from microalgae oil. The main purpose of this study was to present a preprocessing method of algae oil feedstock (Scenedesmus) to remove chlorophyll by saponification. The results showed that 96% of chlorophyll in biomass was removed. High quality orange transparent oil could be extracted from the chlorophyll reduced biomass. Specifically, the proportion of neutral lipids and saturation levels of fatty acids increased, and the pigments composition became carotenoids-based. The critical parameters of chlorophyll reduced biodiesel conformed to the standards of the USA, China and EU. Sodium copper chlorophyllin could be prepared from the bleaching effluent. The results presented herein offer a useful pathway to improve the quality of microalgae oil and reduce the cost of microalgae biodiesel.

  20. Rapid assessment of water pollution by airborne measurement of chlorophyll content.

    Science.gov (United States)

    Arvesen, J. C.; Weaver, E. C.; Millard, J. P.

    1971-01-01

    Present techniques of airborne chlorophyll measurement are discussed as an approach to water pollution assessment. The differential radiometer, the chlorophyll correlation radiometer, and an infrared radiometer for water temperature measurements are described as the key components of the equipment. Also covered are flight missions carried out to evaluate the capability of the chlorophyll correlation radiometer in measuring the chlorophyll content in water bodies with widely different levels of nutrients, such as fresh-water lakes of high and low eutrophic levels, marine waters of high and low productivity, and an estuary with a high sediment content. The feasibility and usefulness of these techniques are indicated.