WorldWideScience

Sample records for central carbon pathway

  1. Elementary Flux Mode Analysis Revealed Cyclization Pathway as a Powerful Way for NADPH Regeneration of Central Carbon Metabolism.

    Directory of Open Access Journals (Sweden)

    Bin Rui

    Full Text Available NADPH regeneration capacity is attracting growing research attention due to its important role in resisting oxidative stress. Besides, NADPH availability has been regarded as a limiting factor in production of industrially valuable compounds. The central carbon metabolism carries the carbon skeleton flux supporting the operation of NADPH-regenerating enzyme and offers flexibility in coping with NADPH demand for varied intracellular environment. To acquire an insightful understanding of its NADPH regeneration capacity, the elementary mode method was employed to compute all elementary flux modes (EFMs of a network representative of central carbon metabolism. Based on the metabolic flux distributions of these modes, a cluster analysis of EFMs with high NADPH regeneration rate was conducted using the self-organizing map clustering algorithm. The clustering results were used to study the relationship between the flux of total NADPH regeneration and the flux in each NADPH producing enzyme. The results identified several reaction combinations supporting high NADPH regeneration, which are proven to be feasible in cells via thermodynamic analysis and coincident with a great deal of previous experimental report. Meanwhile, the reaction combinations showed some common characteristics: there were one or two decarboxylation oxidation reactions in the combinations that produced NADPH and the combination constitution included certain gluconeogenesis pathways. These findings suggested cyclization pathways as a powerful way for NADPH regeneration capacity of bacterial central carbon metabolism.

  2. Pathways of carbon oxidation in continental margin sediments off central Chile

    DEFF Research Database (Denmark)

    Thamdrup, B; Canfield, Donald Eugene

    1996-01-01

    . Pathways of C oxidation were inferred from the depth distributions of the potential oxidants (O2, NO3-, and oxides of Mn and Fe) and from directly determined rates of SO4(2-) reduction. The study area is characterized by intense seasonal upwelling, and during sampling in late summer the bottom water over...

  3. A fuzzy logic controller based approach to model the switching mechanism of the mammalian central carbon metabolic pathway in normal and cancer cells.

    Science.gov (United States)

    Dasgupta, Abhijit; Paul, Debjyoti; De, Rajat K

    2016-07-19

    Dynamics of large nonlinear complex systems, like metabolic networks, depend on several parameters. A metabolic pathway may switch to another pathway in accordance with the current state of parameters in both normal and cancer cells. Here, most of the parameter values are unknown to us. A fuzzy logic controller (FLC) has been developed here for the purpose of modeling metabolic networks by approximating the reasons for the behaviour of a system and applying expert knowledge to track switching between metabolic pathways. The simulation results can track the switching between glycolysis and gluconeogenesis, as well as glycolysis and pentose phosphate pathways (PPP) in normal cells. Unlike normal cells, pyruvate kinase (M2 isoform) (PKM2) switches alternatively between its two oligomeric forms, i.e. an active tetramer and a relatively low activity dimer, in cancer cells. Besides, there is a coordination among PKM2 switching and enzymes catalyzing PPP. These phenomena help cancer cells to maintain their high energy demand and macromolecular synthesis. However, the reduction of initial adenosine triphosphate (ATP) to a very low concentration, decreasing initial glucose uptake, destroying coordination between glycolysis and PPP, and replacement of PKM2 by its relatively inactive oligomeric form (dimer) or inhibition of the translation of PKM2 may destabilize the mutated control mechanism of the mammalian central carbon metabolic (CCM) pathway in cancer cells. The performance of the model is compared appropriately with some existing ones. PMID:27225801

  4. Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A

    Directory of Open Access Journals (Sweden)

    Gunsalus Robert P

    2010-02-01

    Full Text Available Abstract Background The archaeon, Methanosarcina acetivorans strain C2A forms methane, a potent greenhouse gas, from a variety of one-carbon substrates and acetate. Whereas the biochemical pathways leading to methane formation are well understood, little is known about the expression of the many of the genes that encode proteins needed for carbon flow, electron transfer and/or energy conservation. Quantitative transcript analysis was performed on twenty gene clusters encompassing over one hundred genes in M. acetivorans that encode enzymes/proteins with known or potential roles in substrate conversion to methane. Results The expression of many seemingly "redundant" genes/gene clusters establish substrate dependent control of approximately seventy genes for methane production by the pathways for methanol and acetate utilization. These include genes for soluble-type and membrane-type heterodisulfide reductases (hdr, hydrogenases including genes for a vht-type F420 non-reducing hydrogenase, molybdenum-type (fmd as well as tungsten-type (fwd formylmethanofuran dehydrogenases, genes for rnf and mrp-type electron transfer complexes, for acetate uptake, plus multiple genes for aha- and atp-type ATP synthesis complexes. Analysis of promoters for seven gene clusters reveal UTR leaders of 51-137 nucleotides in length, raising the possibility of both transcriptional and translational levels of control. Conclusions The above findings establish the differential and coordinated expression of two major gene families in M. acetivorans in response to carbon/energy supply. Furthermore, the quantitative mRNA measurements demonstrate the dynamic range for modulating transcript abundance. Since many of these gene clusters in M. acetivorans are also present in other Methanosarcina species including M. mazei, and in M. barkeri, these findings provide a basis for predicting related control in these environmentally significant methanogens.

  5. Improving Carbon Fixation Pathways

    OpenAIRE

    Ducat, Daniel C.; Silver, Pamela A.

    2012-01-01

    A recent resurgence in basic and applied research on photosynthesis has been driven in part by recognition that fulfilling future food and energy requirements will necessitate improvements in crop carbon-fixation efficiencies. Photosynthesis in traditional terrestrial crops is being reexamined in light of molecular strategies employed by photosynthetic microbes to enhance the activity of the Calvin cycle. Synthetic biology is well-situated to provide original approaches for compartmentalizing...

  6. Niche-specific regulation of central metabolic pathways in a fungal pathogen

    OpenAIRE

    Barelle, Caroline J; Priest, Claire L; MacCallum, Donna M.; Gow, Neil AR; Odds, Frank C; Brown, Alistair JP

    2006-01-01

    Summary To establish an infection, the pathogen Candida albicans must assimilate carbon and grow in its mammalian host. This fungus assimilates six-carbon compounds via the glycolytic pathway, and two-carbon compounds via the glyoxylate cycle and gluconeogenesis. We address a paradox regarding the roles of these central metabolic pathways in C. albicans pathogenesis: the glyoxylate cycle is apparently required for virulence although glyoxylate cycle genes are repressed by glucose at concentra...

  7. Computational protein design enables a novel one-carbon assimilation pathway

    Energy Technology Data Exchange (ETDEWEB)

    Siegel, JB; Smith, AL; Poust, S; Wargacki, AJ; Bar-Even, A; Louw, C; Shen, BW; Eiben, CB; Tran, HM; Noor, E; Gallaher, JL; Bale, J; Yoshikuni, Y; Gelb, MH; Keasling, JD; Stoddard, BL; Lidstrom, ME; Baker, D

    2015-03-09

    We describe a computationally designed enzyme, formolase (FLS), which catalyzes the carboligation of three one-carbon formaldehyde molecules into one three-carbon dihydroxyacetone molecule. The existence of FLS enables the design of a new carbon fixation pathway, the formolase pathway, consisting of a small number of thermodynamically favorable chemical transformations that convert formate into a three-carbon sugar in central metabolism. The formolase pathway is predicted to use carbon more efficiently and with less backward flux than any naturally occurring one-carbon assimilation pathway. When supplemented with enzymes carrying out the other steps in the pathway, FLS converts formate into dihydroxyacetone phosphate and other central metabolites in vitro. These results demonstrate how modern protein engineering and design tools can facilitate the construction of a completely new biosynthetic pathway.

  8. Rewriting central metabolism for carbon conservation

    OpenAIRE

    Bogorad, Igor Walter

    2015-01-01

    The efficient use of carbon sources is a core objective in metabolic engineering and biorefinery. Most approaches have focused on optimizing naturally occurring pathways to improve titer, productivity, and yield. However, certain inherent limitations cannot be surpassed if natural pathways are used. Here we designed two synthetic metabolic pathways, Non-Oxidative Glycolysis (NOG) and Methanol Condensation Cycle (MCC) for the utilization of sugar and methanol, respectively. We also created a ...

  9. Transition pathways for a UK low carbon electricity future

    International Nuclear Information System (INIS)

    Achieving long-term targets for greenhouse gas emissions reductions, such as the UK's legally-binding target of reducing its emissions by 80% by 2050, will require a transition in systems for meeting and shaping energy service demands, involving radical substitution to low-carbon supply technologies and improvements in end-use energy efficiency. This paper describes the development and high-level analysis of a set of transition pathways to a UK low carbon electricity system, explaining key features of the core pathways developed and the distinctiveness and value of the approach. The pathways use an ‘action space’ concept to explore the dynamic interactions between choices made by actors, which are influenced by the competing governance ‘framings’ or ‘logics’ that different actors pursue. The paper sets out three core transition pathways – Market Rules, Central Co-ordination and Thousand Flowers, in which market, government and civil society logics respectively dominate. It summarises the key technological and institutional changes in these pathways, and the roles of actors in bringing these about. This leads to an identification of the key risks to the realisation of each of the pathways, and of the challenges for individuals, businesses, social movements and policy-makers in taking action to bring them about and sustain them. - Highlights: ► Development of a set of transition pathways to a UK low carbon electricity system. ► Action space to explore the dynamic interactions between choices made by actors. ► Three core pathways in which market, government and civil society logics dominate. ► Key technological and institutional changes, and the roles of actors in pathways. ► Challenges for different actors in realising pathways.

  10. Central mechanisms II: pharmacology of brainstem pathways.

    Science.gov (United States)

    Bolser, D C

    2009-01-01

    Following systemic administration, centrally acting antitussive drugs are generally assumed to act in the brainstem to inhibit cough. However, recent work in humans has raised the possibility of suprapontine sites of action for cough suppressants. For drugs that may act in the brainstem, the specific locations, types of neurones affected, and receptor specificities of the compounds represent important issues regarding their cough-suppressant actions. Two medullary areas that have received the most attention regarding the actions of antitussive drugs are the nucleus of the tractus solitarius (NTS) and the caudal ventrolateral respiratory column. Studies that have implicated these two medullary areas have employed both microinjection and in vitro recording methods to control the location of action of the antitussive drugs. Other brainstem regions contain neurones that participate in the production of cough and could represent potential sites of action of antitussive drugs. These regions include the raphe nuclei, pontine nuclei, and rostral ventrolateral medulla. Specific receptor subtypes have been associated with the suppression of cough at central sites, including 5-HT1A, opioid (mu, kappa, and delta), GABA-B, tachykinin neurokinin-1 (NK-1) and neurokinin-2, non-opioid (NOP-1), cannabinoid, dopaminergic, and sigma receptors. Aside from tachykinin NK-1 receptors in the NTS, relatively little is known regarding the receptor specificity of putative antitussive drugs in particular brainstem regions. Our understanding of the mechanisms of action of antitussive drugs would be significantly advanced by further work in this area. PMID:18825342

  11. The Central Carbon and Energy Metabolism of Marine Diatoms

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    Adriano Nunes-Nesi

    2013-05-01

    Full Text Available Diatoms are heterokont algae derived from a secondary symbiotic event in which a eukaryotic host cell acquired an eukaryotic red alga as plastid. The multiple endosymbiosis and horizontal gene transfer processes provide diatoms unusual opportunities for gene mixing to establish distinctive biosynthetic pathways and metabolic control structures. Diatoms are also known to have significant impact on global ecosystems as one of the most dominant phytoplankton species in the contemporary ocean. As such their metabolism and growth regulating factors have been of particular interest for many years. The publication of the genomic sequences of two independent species of diatoms and the advent of an enhanced experimental toolbox for molecular biological investigations have afforded far greater opportunities than were previously apparent for these species and re-invigorated studies regarding the central carbon metabolism of diatoms. In this review we discuss distinctive features of the central carbon metabolism of diatoms and its response to forthcoming environmental changes and recent advances facilitating the possibility of industrial use of diatoms for oil production. Although the operation and importance of several key pathways of diatom metabolism have already been demonstrated and determined, we will also highlight other potentially important pathways wherein this has yet to be achieved.

  12. Afferent diversity and the organization of central vestibular pathways

    OpenAIRE

    Jay M Goldberg

    2000-01-01

    This review considers whether the vestibular system includes separate populations of sensory axons innervating individual organs and giving rise to distinct central pathways. There is a variability in the discharge properties of afferents supplying each organ. Discharge regularity provides a marker for this diversity since fibers which differ in this way also differ in many other properties. Postspike recovery of excitability determines the discharge regularity of an afferent and its sensitiv...

  13. Flux analysis of central metabolic pathways in Geobactermetallireducens during reduction of solubleFe(III)-NTA

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Yinjie J.; Chakraborty, Romy; Garcia-Martin, Hector; Chu,Jeannie; Hazen, Terry C.; Keasling, Jay D.

    2007-01-01

    We analyzed the carbon fluxes in the central metabolism ofGeobacter metallireducens strain GS-15 using 13C isotopomer modeling.Acetate labeled in the 1st or 2nd position was the sole carbon source,and Fe-NTA was the sole terminal electron acceptor. The measured labeledacetate uptake rate was 21 mmol/gdw/h in the exponential growth phase.The resulting isotope labeling pattern of amino acids allowed an accuratedetermination of the in vivo global metabolic reaction rates (fluxes)through the central metabolic pathways using a computational isotopomermodel. The tracer experiments showed that G. metallireducens containedcomplete biosynthesis pathways for essential metabolism, and this strainmight also have an unusual isoleucine biosynthesis route (usingacetyl-CoA and pyruvate as the precursors). The model indicated that over90 percent of the acetate was completely oxidized to CO2 via a completetricarboxylic acid (TCA) cycle while reducing iron. Pyruvate carboxylaseand phosphoenolpyruvate carboxykinase were present under theseconditions, but enzymes in the glyoxylate shunt and malic enzyme wereabsent. Gluconeogenesis and the pentose phosphate pathway were mainlyemployed for biosynthesis and accounted for less than 3 percent of totalcarbon consumption. The model also indicated surprisingly highreversibility in the reaction between oxoglutarate and succinate. Thisstep operates close to the thermodynamic equilibrium possibly becausesuccinate is synthesized via a transferase reaction, and the conversionof oxoglutarate to succinate is a rate limiting step for carbonmetabolism. These findings enable a better understanding of therelationship between genome annotation and extant metabolic pathways inG. metallireducens.

  14. Investigation into the flux distribution of central carbon metabolism in Corynebacterium glutamicum using principal component analysis

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    Shang Chuanyu

    2015-01-01

    Full Text Available Central carbon metabolism is the main source of energy required by organisms and it provides precursors for other in vivo metabolic processes. The flux flowing through the pathways involved in central carbon metabolism characterizes its biological function and genetic readout between species or environments. In recent years, using a 13C tracer technique, researchers have measured the flux of central carbon metabolism in Corynebacterium glutamicum under a variety of nutritional and environmental changes or genetic modifications. However, there is no integrated and comparative analysis of these measured flux values. In this study, the flux values of central carbon metabolism in Corynebacterium glutamicum that were obtained in other recent studies were consolidated. A preliminary examination of the distribution characteristics of flux values in each metabolic pathway was conducted and the regression relationship between different fluxes was investigated. The principal components of the flux vector were further extracted and aggregated based on the components, and the general features of flux distribution of central carbon metabolism as well as the influence of environmental and genetic factors on the flux distribution were determined. This study provides a foundation for further investigation into the flux distribution and regulation characteristics of central carbon metabolism.

  15. Pathways to marriage and cohabitation in Central America

    Directory of Open Access Journals (Sweden)

    Kathryn Grace

    2014-01-01

    Full Text Available Background: The notion that increasing prevalence of cohabitation relative to marriage, and increasing age at first marriage are part of a broader shift in societal norms -- a second demographic transition -- is now well supported by studies focused on US and European populations. Recent research points to the similarly high prevalence of cohabitation in Latin America as perhaps signaling the diffusion of modern ideals and norms about union formation. In Central America this is unlikely to be the case given the long history and enduring acceptance of cohabitation that is unrelated to modern ideals. While there are studies that have documented this history and current prevalence, there is no research examining the intersecting life course pathways from adolescence through early adulthood that lead to marriage or cohabitation. This is not surprising given that available data for Central American countries are not ideally suited to studying the process. Methods: We use retrospective questions from large, nationally representative Central American surveys (Guatemala, Honduras, and Nicaragua to establish the timing of marriage or cohabitation and events that are closely tied to union formation. We utilize additive causespecific hazard models, and predicted transition probabilities based on selected covariate pathways, to study the competing risks of exiting from the status of never in union. Results: Our results identify sexual activity and pregnancy as the primary drivers of union formation and indicate that education serves as a protective factor against union formation. We also find distinct differences among countries and a strong indication that cohabitations are less stable unions.

  16. Characterization of physiological responses to 22 gene knockouts in Escherichia coli central carbon metabolism.

    Science.gov (United States)

    Long, Christopher P; Gonzalez, Jacqueline E; Sandoval, Nicholas R; Antoniewicz, Maciek R

    2016-09-01

    Understanding the impact of gene knockouts on cellular physiology, and metabolism in particular, is centrally important to quantitative systems biology and metabolic engineering. Here, we present a comprehensive physiological characterization of wild-type Escherichia coli and 22 knockouts of enzymes in the upper part of central carbon metabolism, including the PTS system, glycolysis, pentose phosphate pathway and Entner-Doudoroff pathway. Our results reveal significant metabolic changes that are affected by specific gene knockouts. Analysis of collective trends and correlations in the data using principal component analysis (PCA) provide new, and sometimes surprising, insights into E. coli physiology. Additionally, by comparing the data-to-model predictions from constraint-based approaches such as FBA, MOMA and RELATCH we demonstrate the important role of less well-understood kinetic and regulatory effects in central carbon metabolism. PMID:27212692

  17. Central metabolic pathways of Aureobasidium pullulans CGMCC1234 for pullulan production.

    Science.gov (United States)

    Sheng, Long; Liu, Chang; Tong, Qunyi; Ma, Meihu

    2015-12-10

    With the purpose of understanding the metabolic network of Aureobasidium pullulans, the central metabolic pathways were confirmed by the activities of the key enzymes involved in different pathways. The effect of different iodoacetic acid concentrations on pullulan fermentation was also investigated in this paper. The activities of phosphofructokinases and glucose-6-phosphate dehydrogenase existed in A. pullulans CGMCC1234, whereas 2-keto-3-deoxy-6-phosphogluconate aldolase activity was not detected. We proposed that the central metabolic pathways of A. pullulans CGMCC1234 included EMP and PPP, but no ED. Pullulan production declined fast as the iodoacetic acid increased, while cell growth offered upgrade firstly than descending latter tendency. Compared to the control group, the ratio of ATP/ADP of 0.60 mM iodoacetic acid group was lower at different stages of pullulan fermentation. The findings revealed that low concentration of iodoacetic acid might impel carbon flux flow toward the PPP, but reduce the flux of the EMP. PMID:26428132

  18. Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications

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    Kuo-HsiangTang

    2011-08-01

    Full Text Available Photosynthesis is the biological process that converts solar energy to biomass, bio-products and biofuel. It is the only major natural solar energy storage mechanism on Earth. To satisfy the increased demand for sustainable energy sources and identify the mechanism of photosynthetic carbon assimilation, which is one of the bottlenecks in photosynthesis, it is essential to understand the process of solar energy storage and associated carbon metabolism in photosynthetic organisms. Researchers have employed physiological studies, microbiological chemistry, enzyme assays, genome sequencing, transcriptomics, and 13C-based metabolomics/fluxomics to investigate central carbon metabolism and enzymes that operate in phototrophs. In this report, we review diverse CO2 assimilation pathways, acetate assimilation, carbohydrate catabolism, the TCA cycle and some key and/or unconventional enzymes in central carbon metabolism of phototrophic microorganisms. We also discuss the reducing equivalent flow during photoautotrophic and photoheterotrophic growth, evolutionary links in the central carbon metabolic network, and correlations between photosynthetic and non-photosynthetic organisms. Considering the metabolic versatility in these fascinating and diverse photosynthetic bacteria, many essential questions in their central carbon metabolism still remain to be addressed.

  19. Carbon pathways in the Seine river system

    Science.gov (United States)

    Marescaux, Audrey; Garnier, Josette; Thieu, Vincent

    2016-04-01

    Many papers have recently suggested that the anthropogenic perturbations of the carbon cycle have led to a significant increase in carbon export from terrestrial ecosystems to inland waters. The quantification of the carbon cascade (including fate of CO2 emissions) in highly anthropized river systems is thus essential to understand the response of aquatic systems. The Seine Basin where Paris and its environs represent 2/3 of its population, and agriculture is particularly intensive, is a eutrophic system. The main aim of this research is to understand and quantify how an excess of anthropogenic nutrients entering the Seine River system may locally enhance primary production, C sequestration, C respiration and CO2 emissions. The development of a new CO2 module in the pre-existing biogeochemical Riverstrahler model (Billen et al., 2007) should enable a refined calculation of the carbon budget. Besides calculation of the Respiration and Production activities along the entire river continuum, it will directly associate CO2 emissions. The CO2 modelling results will be confronted to (i) direct (in-situ) measurements with a non-dispersive infrared gas analyzer and (ii) indirect measurements based on total alkalinity, carbonate and pH along the Seine river system during the last decades, and (iii) calculations of a C metabolism budget. Billen, G., Garnier, J., Némery, J., Sebilo, M., Sferratore, A., Barles, S., Benoit P., Benoît, M. (2007). A long-term view of nutrient transfers through the Seine river continuum. Science of the Total Environment, 375(1-3), 80-97. http://doi.org/10.1016/j.scitotenv.2006.12.005

  20. Phosphoketolase Pathway Engineering for Carbon-Efficient Biocatalysis

    Energy Technology Data Exchange (ETDEWEB)

    Henard, Calvin Andrew [National Renewable Energy Lab. (NREL), Golden, CO (United States); Freed, Emily Frances [National Renewable Energy Lab. (NREL), Golden, CO (United States); Guarnieri, Michael Thomas [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2015-09-08

    Recent advances in metabolic engineering have facilitated the development of microbial biocatalysts capable of producing an array of bio-products, ranging from fuels to drug molecules. These bio-products are commonly generated through an acetyl-CoA intermediate, which serves as a key precursor in the biological conversion of carbon substrates. Moreover, conventional biocatalytic upgrading strategies proceeding through this route are limited by low carbon efficiencies, in large part due to carbon losses associated with pyruvate decarboxylation to acetyl-CoA. Bypass of pyruvate decarboxylation offers a means to dramatically enhance carbon yields and, in turn, bioprocess economics. Here, we discuss recent advances and prospects for employing the phosphoketolase pathway for direct biosynthesis of acetyl-CoA from carbon substrates, and phosphoketolase-based metabolic engineering strategies for carbon efficient biocatalysis.

  1. Transitions in pathways of human development and carbon emissions

    International Nuclear Information System (INIS)

    Countries are known to follow diverse pathways of life expectancy and carbon emissions, but little is known about factors driving these dynamics. In this letter we estimate the cross-sectional economic, demographic and geographic drivers of consumption-based carbon emissions. Using clustering techniques, countries are grouped according to their drivers, and analysed with respect to a criteria of one tonne of carbon emissions per capita and a life expectancy over 70 years (Goldemberg’s Corner). Five clusters of countries are identified with distinct drivers and highly differentiated outcomes of life expectancy and carbon emissions. Representatives from four clusters intersect within Goldemberg’s Corner, suggesting diverse combinations of drivers may still lead to sustainable outcomes, presenting many countries with an opportunity to follow a pathway towards low-carbon human development. By contrast, within Goldemberg’s Corner, there are no countries from the core, wealthy consuming nations. These results reaffirm the need to address economic inequalities within international agreements for climate mitigation, but acknowledge plausible and accessible examples of low-carbon human development for countries that share similar underlying drivers of carbon emissions. In addition, we note differences in drivers between models of territorial and consumption-based carbon emissions, and discuss interesting exceptions to the drivers-based cluster analysis. (paper)

  2. Neural-metabolic coupling in the central visual pathway.

    Science.gov (United States)

    Freeman, Ralph D; Li, Baowang

    2016-10-01

    Studies are described which are intended to improve our understanding of the primary measurements made in non-invasive neural imaging. The blood oxygenation level-dependent signal used in functional magnetic resonance imaging (fMRI) reflects changes in deoxygenated haemoglobin. Tissue oxygen concentration, along with blood flow, changes during neural activation. Therefore, measurements of tissue oxygen together with the use of a neural sensor can provide direct estimates of neural-metabolic interactions. We have used this relationship in a series of studies in which a neural microelectrode is combined with an oxygen micro-sensor to make simultaneous co-localized measurements in the central visual pathway. Oxygen responses are typically biphasic with small initial dips followed by large secondary peaks during neural activation. By the use of established visual response characteristics, we have determined that the oxygen initial dip provides a better estimate of local neural function than the positive peak. This contrasts sharply with fMRI for which the initial dip is unreliable. To extend these studies, we have examined the relationship between the primary metabolic agents, glucose and lactate, and associated neural activity. For this work, we also use a Doppler technique to measure cerebral blood flow (CBF) together with neural activity. Results show consistent synchronously timed changes such that increases in neural activity are accompanied by decreases in glucose and simultaneous increases in lactate. Measurements of CBF show clear delays with respect to neural response. This is consistent with a slight delay in blood flow with respect to oxygen delivery during neural activation.This article is part of the themed issue 'Interpreting BOLD: a dialogue between cognitive and cellular neuroscience'. PMID:27574310

  3. Pathways for implementing REDD+. Experiences from carbon markets and communities

    Energy Technology Data Exchange (ETDEWEB)

    Zhu, X.; Ravnkilde Moeller, L.; Lopez, T. De; Romero, M.Z.

    2011-07-01

    This issue of Carbon Market Perspectives on 'Pathways for implementing REDD+: Experience from carbon markets and communities' discusses the role of carbon markets in scaling up investments for REDD+ in developing countries. Nine articles authored by experienced negotiators on REDD+, carbon market actors, project developers and other leading experts share experiences and make suggestions on the key elements of a future international REDD+ regime: Architecture and underlying principles, measuring, reporting and verification (MRV), private-sector involvement, the rights of indigenous people and local communities, biodiversity conservation and environmental integrity. The articles are grouped under three main topics: the lessons of existing REDD+ projects; the future REDD+ regime and the role of carbon markets; and experiences and ideas about the involvement of indigenous people and local communities. (LN)

  4. Carbonate platform growth and demise offshore Central Vietnam

    DEFF Research Database (Denmark)

    Fyhn, Michael B.W.; Boldreel, Lars Ole; Nielsen, Lars H.;

    2013-01-01

    . East of the fault zone, the Triton Carbonate Platform was also initiated during the Early Miocene. Carbonate growth thrived during Early and part of Middle Miocene time and a thick, clean Lower and Middle Miocene carbonate succession cover the Triton Horst and the Qui Nhon Ridge. During the Middle......Miocene carbonate platforms cover a large part of the Central Vietnamese South China Sea margin. Early carbonate deposition took place on two regional platforms separated by a narrow depression developed along the trace of the East Vietnam Boundary Fault Zone. West of the East Vietnam Boundary...... Fault Zone, the Tuy Hoa Carbonate Platform fringes the continental margin between Da Nang and Nha Trang. Here, platform growth initiated during the Early Miocene and continued until Middle Miocene time when regional uplift led to subaerial exposure, termination of platform growth and karstification...

  5. Pathways of organic carbon oxidation in three continental margin sediments

    DEFF Research Database (Denmark)

    Canfield, Donald Eugene; Jørgensen, Bo Barker; Fossing, Henrik;

    1993-01-01

    important and of a similar magnitude. Overall, most of the measured O2 flux into the sediment was used to oxidized reduced inorganic species and not organic carbon. We suspect that the importance of O2 respiration in many coastal sediments has been overestimated, whereas metal oxide reduction (both Fe and......We have combined several different methodologies to quantify rates of organic carbon mineralization by the various electron acceptors in sediments from the coast of Denmark and Norway. Rates of NH4+ and Sigma CO2 liberation sediment incubations were used with O2 penetration depths to conclude that...... O2 respiration accounted for only between 3.6-17.4% of the total organic carbon oxidation. Dentrification was limited to a narrow zone just below the depth of O2 penetration, and was not a major carbon oxidation pathway. The processes of Fe reduction, Mn reduction and sulfate reduction dominated...

  6. The effects of centrally injected arachidonic acid on respiratory system: Involvement of cyclooxygenase to thromboxane signaling pathway.

    Science.gov (United States)

    Erkan, Leman Gizem; Guvenc, Gokcen; Altinbas, Burcin; Niaz, Nasir; Yalcin, Murat

    2016-05-01

    Arachidonic acid (AA) is a polyunsaturated fatty acid that is present in the phospholipids of the cell membranes of the body and is abundant in the brain. Exogenously administered AA has been shown to affect brain metabolism and to exhibit cardiovascular and neuroendocrine actions. However, little is known regarding its respiratory actions and/or central mechanism of its respiratory effects. Therefore, the present study was designed to investigate the possible effects of centrally injected AA on respiratory system and the mediation of the central cyclooxygenase (COX) to thromboxane A2 (TXA2) signaling pathway on AA-induced respiratory effects in anaesthetized rats. Intracerebroventricular (i.c.v.) administration of AA induced dose- and time-dependent increase in tidal volume, respiratory rates and respiratory minute ventilation and also caused an increase in partial oxygen pressure (pO2) and decrease in partial carbon dioxide pressure (pCO2) in male anaesthetized Spraque Dawley rats. I.c.v. pretreatment with ibuprofen, a non-selective COX inhibitor, completely blocked the hyperventilation and blood gases changes induced by AA. In addition, central pretreatment with different doses of furegrelate, a TXA2 synthesis inhibitor, also partially prevented AA-evoked hyperventilation and blood gases effects. These data explicitly show that centrally administered AA induces hyperventilation with increasing pO2 and decreasing pCO2 levels which are mediated by the activation of central COX to TXA2 signaling pathway. PMID:26767978

  7. The structure of uncertainty in future low carbon pathways

    International Nuclear Information System (INIS)

    Low carbon scenario and transition pathway analysis involves the consideration of uncertainties around future technological and social changes. This paper argues that uncertainty can be better understood, and the strategic and policy effectiveness of scenarios or pathways thereby improved, through a systematic categorisation of the different kinds of certain and uncertain elements of which the future is comprised. To achieve this, this paper makes two novel methodological contributions. First it proposes a system conceptualisation which is based on a detailed description of the dynamics of the actors and institutions relevant to the system under study, iteratively linked to a detailed representation of the technological system. Second, it argues that as a result of developing this actor-based low carbon scenarios approach it is possible to characterise future elements of the system as either pre-determined, actor contingent or non-actor contingent. An outline scenario approach is presented, based on these two contributions. It emerges that the different categories of future element are associated with different types of uncertainty and each prompt different strategic policy responses. This categorisation of future elements therefore clarifies the relationship of scenario content to specific types of policy response, and thus improves the policy tractability of resulting scenarios. - Highlights: ► Aims, uncertainties and challenges of low carbon scenarios/pathways summarized. ► Importance of defining actors and describing sociotechnical evolution emphasised. ► Categorisation of different kinds of future uncertainties explained. ► A framework combining actors, institutions and co-evolving systems presented. ► Process for strategically effective low carbon scenarios/pathways presented.

  8. Dispersal limitation drives successional pathways in Central Siberian forests under current and intensified fire regimes.

    Science.gov (United States)

    Tautenhahn, Susanne; Lichstein, Jeremy W; Jung, Martin; Kattge, Jens; Bohlman, Stephanie A; Heilmeier, Hermann; Prokushkin, Anatoly; Kahl, Anja; Wirth, Christian

    2016-06-01

    Fire is a primary driver of boreal forest dynamics. Intensifying fire regimes due to climate change may cause a shift in boreal forest composition toward reduced dominance of conifers and greater abundance of deciduous hardwoods, with potential biogeochemical and biophysical feedbacks to regional and global climate. This shift has already been observed in some North American boreal forests and has been attributed to changes in site conditions. However, it is unknown if the mechanisms controlling fire-induced changes in deciduous hardwood cover are similar among different boreal forests, which differ in the ecological traits of the dominant tree species. To better understand the consequences of intensifying fire regimes in boreal forests, we studied postfire regeneration in five burns in the Central Siberian dark taiga, a vast but poorly studied boreal region. We combined field measurements, dendrochronological analysis, and seed-source maps derived from high-resolution satellite images to quantify the importance of site conditions (e.g., organic layer depth) vs. seed availability in shaping postfire regeneration. We show that dispersal limitation of evergreen conifers was the main factor determining postfire regeneration composition and density. Site conditions had significant but weaker effects. We used information on postfire regeneration to develop a classification scheme for successional pathways, representing the dominance of deciduous hardwoods vs. evergreen conifers at different successional stages. We estimated the spatial distribution of different successional pathways under alternative fire regime scenarios. Under intensified fire regimes, dispersal limitation of evergreen conifers is predicted to become more severe, primarily due to reduced abundance of surviving seed sources within burned areas. Increased dispersal limitation of evergreen conifers, in turn, is predicted to increase the prevalence of successional pathways dominated by deciduous hardwoods

  9. Metabolic pathway engineering using the central signal processor PII

    OpenAIRE

    Watzer, Björn; Engelbrecht, Alicia; Hauf, Waldemar; Stahl, Mark; Maldener, Iris; Forchhammer, Karl

    2015-01-01

    Background PII signal processor proteins are wide spread in prokaryotes and plants where they control a multitude of anabolic reactions. Efficient overproduction of metabolites requires relaxing the tight cellular control circuits. Here we demonstrate that a single point mutation in the PII signaling protein from the cyanobacterium Synechocystis sp. PCC 6803 is sufficient to unlock the arginine pathway causing over accumulation of the biopolymer cyanophycin (multi-l-arginyl-poly-l-aspartate)....

  10. Pathways of organic carbon oxidation in three continental margin sediments

    Science.gov (United States)

    Canfield, D. E.; Jorgensen, B. B.; Fossing, H.; Glud, R.; Gundersen, J.; Ramsing, N. B.; Thamdrup, B.; Hansen, J. W.; Nielsen, L. P.; Hall, P. O.

    1993-01-01

    We have combined several different methodologies to quantify rates of organic carbon mineralization by the various electron acceptors in sediments from the coast of Denmark and Norway. Rates of NH4+ and Sigma CO2 liberation sediment incubations were used with O2 penetration depths to conclude that O2 respiration accounted for only between 3.6-17.4% of the total organic carbon oxidation. Dentrification was limited to a narrow zone just below the depth of O2 penetration, and was not a major carbon oxidation pathway. The processes of Fe reduction, Mn reduction and sulfate reduction dominated organic carbon mineralization, but their relative significance varied depending on the sediment. Where high concentrations of Mn-oxide were found (3-4 wt% Mn), only Mn reduction occurred. With lower Mn oxide concentrations more typical of coastal sediments, Fe reduction and sulfate reduction were most important and of a similar magnitude. Overall, most of the measured O2 flux into the sediment was used to oxidized reduced inorganic species and not organic carbon. We suspect that the importance of O2 respiration in many coastal sediments has been overestimated, whereas metal oxide reduction (both Fe and Mn reduction) has probably been well underestimated.

  11. Flux analysis of central metabolic pathways in the Fe(III)-reducing organism Geobacter metallireducens via 13C isotopiclabeling

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Yinjie J.; Chakraborty, Romy; Martin, Hector Garcia; Chu,Jeannie; Hazen, Terry C.; Keasling, Jay D.

    2007-08-13

    We analyzed the carbon fluxes in the central metabolism ofGeobacter metallireducens strain GS-15 using 13C isotopomer modeling.Acetate labeled in the 1st or 2nd position was the sole carbon source,and Fe-NTA was the sole terminal electron acceptor. The measured labeledacetate uptake rate was 21 mmol/gdw/h in the exponential growth phase.The resulting isotope labeling pattern of amino acids allowed an accuratedetermination of the in vivo global metabolic reaction rates (fluxes)through the central metabolic pathways using a computational isotopomermodel. The model indicated that over 90 percent of the acetate wascompletely oxidized to CO2 via a complete tricarboxylic acid (TCA) cyclewhile reducing iron. Pyruvate carboxylase and phosphoenolpyruvatecarboxykinase were present under these conditions, but enzymes in theglyoxylate shunt and malic enzyme were absent. Gluconeogenesis and thepentose phosphate pathway were mainly employed for biosynthesis andaccounted for less than 3 percent of total carbon consumption. The modelalso indicated surprisingly high reversibility in the reaction betweenoxoglutarate and succinate. This step operates close to the thermodynamicequilibrium possibly because succinate is synthesized via a transferasereaction, and its product, acetyl-CoA, inhibits the conversion ofoxoglutarate to succinate. These findings enable a better understandingof the relationship between genome annotation and extant metabolicpathways in G. metallireducens.

  12. Pathways to marriage and cohabitation in Central America

    OpenAIRE

    Kathryn Grace; Stuart Sweeney

    2014-01-01

    Background: The notion that increasing prevalence of cohabitation relative to marriage, and increasing age at first marriage are part of a broader shift in societal norms -- a second demographic transition -- is now well supported by studies focused on US and European populations. Recent research points to the similarly high prevalence of cohabitation in Latin America as perhaps signaling the diffusion of modern ideals and norms about union formation. In Central America this is unlikely to be...

  13. Windthrows increase soil carbon stocks in a central Amazon forest

    Science.gov (United States)

    dos Santos, Leandro T.; Magnabosco Marra, Daniel; Trumbore, Susan; de Camargo, Plínio B.; Negrón-Juárez, Robinson I.; Lima, Adriano J. N.; Ribeiro, Gabriel H. P. M.; dos Santos, Joaquim; Higuchi, Niro

    2016-03-01

    Windthrows change forest structure and species composition in central Amazon forests. However, the effects of widespread tree mortality associated with wind disturbances on soil properties have not yet been described in this vast region. We investigated short-term effects (7 years after disturbance) of widespread tree mortality caused by a squall line event from mid-January of 2005 on soil carbon stocks and concentrations in a central Amazon terra firme forest. The soil carbon stock (averaged over a 0-30 cm depth profile) in disturbed plots (61.4 ± 8.2 Mg ha-1, mean ±95 % confidence interval) was marginally higher (p = 0.09) than that from undisturbed plots (47.7 ± 13.6 Mg ha-1). The soil organic carbon concentration in disturbed plots (2.0 ± 0.17 %) was significantly higher (p < 0.001) than that from undisturbed plots (1.36 ± 0.24 %). Moreover, soil carbon stocks were positively correlated with soil clay content (r2 = 0.332, r = 0.575 and p = 0.019) and with tree mortality intensity (r2 = 0.257, r = 0.506 and p = 0.045). Our results indicate that large inputs of plant litter associated with large windthrow events cause a short-term increase in soil carbon content, and the degree of increase is related to soil clay content and tree mortality intensity. The higher carbon content and potentially higher nutrient availability in soils from areas recovering from windthrows may favor forest regrowth and increase vegetation resilience.

  14. Adipose Tissue and Energy Expenditure: Central and Peripheral Neural Activation Pathways.

    Science.gov (United States)

    Blaszkiewicz, Magdalena; Townsend, Kristy L

    2016-06-01

    Increasing energy expenditure is an appealing therapeutic target for the prevention and reversal of metabolic conditions such as obesity or type 2 diabetes. However, not enough research has investigated how to exploit pre-existing neural pathways, both in the central nervous system (CNS) and peripheral nervous system (PNS), in order to meet these needs. Here, we review several research areas in this field, including centrally acting pathways known to drive the activation of sympathetic nerves that can increase lipolysis and browning in white adipose tissue (WAT) or increase thermogenesis in brown adipose tissue (BAT), as well as other central and peripheral pathways able to increase energy expenditure of these tissues. In addition, we describe new work investigating the family of transient receptor potential (TRP) channels on metabolically important sensory nerves, as well as the role of the vagus nerve in regulating energy balance. PMID:27055864

  15. Framing REDD+ in India: Carbonizing and centralizing Indian forest governance?

    International Nuclear Information System (INIS)

    Highlights: • We analyze whether India's REDD+ strategy induces carbonization and centralization. • REDD+ in India is framed as an opportunity for synergistic, decentralized governance. • Yet national safeguards are not as strong as asserted. • Controversial issues have so far been side-lined in India's REDD+ strategy. • Without investments, synergistic and decentralized REDD+ governance remains unlikely. - Abstract: This article analyzes the interaction of newly articulated climate governance goals with long-standing forest policies and practices in India. We focus on India's REDD+ (reducing emissions from deforestation and forest degradation and related forest activities) strategy, with a particular focus on the Green India Mission (GIM). The GIM calls for a doubling of the area for afforestation and reforestation in India in the next decade as a dominant climate mitigation strategy. We analyze how the GIM policy document frames carbon versus non-carbon benefits to be derived from forest-related activities; and how the GIM envisages division of authority (between national, regional and local levels) in its implementation. We are interested in assessing (a) whether the GIM promotes a “carbonization” of Indian forest governance, i.e. an increased focus on forest carbon at the expense of other ecosystem services; and (b) whether it promotes an increased centralization of forest governance in India through retaining or transferring authority and control over forest resources to national and state-level authorities, at the expense of local communities. We argue that the GIM frames the climate-forest interaction as an opportunity to synergistically enhance both carbon and non-carbon benefits to be derived from forests; while simultaneously promoting further decentralization of Indian forest governance. However, based on past experiences and developments to date, we conclude that without significant investments in community-based carbon and biodiversity

  16. Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris Hildenborough using Gas Chromatography-Mass Spectrometry and Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry

    International Nuclear Information System (INIS)

    Flux distribution in central metabolic pathways of Desulfovibrio vulgaris Hildenborough was examined using 13C tracer experiments. Consistent with the current genome annotation and independent evidence from enzyme activity assays, the isotopomer results from both GC-MS and Fourier Transform-Ion Cyclotron Resonance mass spectrometry (FT-ICR MS) indicate the lack of oxidatively functional TCA cycle and an incomplete pentose phosphate pathway. Results from this study suggest that fluxes through both pathways are limited to biosynthesis. The data also indicate that >80 percent of the lactate was converted to acetate and the reactions involved are the primary route of energy production (NAD(P)H and ATP production). Independent of the TCA cycle, direct cleavage of acetyl-CoA to CO and 5,10-methyl-THF also leads to production of NADH and ATP. Although the genome annotation implicates a ferredoxin-dependent oxoglutarate synthase, isotopic evidence does not support flux through this reaction in either the oxidative or reductive mode; therefore, the TCA cycle is incomplete. FT-ICR MS was used to locate the labeled carbon distribution in aspartate and glutamate and confirmed the presence of an atypical enzyme for citrate formation suggested in previous reports (the citrate synthesized by this enzyme is the isotopic antipode of the citrate synthesized by the (S)-citrate synthase). These findings enable a better understanding of the relation between genome annotation and actual metabolic pathways in D. vulgaris, and also demonstrate FT-ICR MS as a powerful tool for isotopomer analysis, overcoming problems in both GC-MS and NMR spectroscopy

  17. Incontinence and psychological problems in children: a common central nervous pathway?

    Science.gov (United States)

    Van Herzeele, Charlotte; Vande Walle, Johan

    2016-05-01

    Nocturnal enuresis is caused by a mismatch between the nocturnal bladder capacity and the nocturnal diuresis rate, in the presence of a deficient arousability in the majority of patients, according to the pediatric and urologic literature. Psychiatric and psychologic literature are still concentrating on the potential role of psychological factors and central nervous mechanisms in the pathogenesis, as is reflected in the DMS-5 criteria. However, research has clearly shown several important comorbidities between neuropsychological dysfunctions and nocturnal enuresis. Due to the increased comorbidity of (neuro)psychological problems, sleep problems, circadian rhythms, and enuresis, the question arises as to whether there is a possible common central pathway in the pathogenesis. It is likely that the coexistence of these problems can be attributed to a common central nervous system involvement. The specific role of the central nervous system remains unclear, but several pathways are possible. The high comorbidity between enuresis, sleep, and (neuro)psychological functioning is probably attributable to a common pathogenetic pathway, emphasizing the importance of a multidisciplinary focus in screening and treatment in children with nocturnal enuresis. PMID:26872485

  18. Branching points for transition pathways: assessing responses of actors to challenges on pathways to a low carbon future

    International Nuclear Information System (INIS)

    This paper describes initial analysis of branching points on a set of transition pathways to a UK low carbon electricity future by 2050. As described in other papers in this special issue, we are exploring and analysing a set of core transition pathways, based on alternative governance patterns in which the ‘logics’ of market actors, government actors and civil society actors, respectively dominate. This core pathway analysis is enhanced by analyses of branching points within and across the pathways, which informs how competition between different logics plays out at key decision points. Branching points are defined as key decision points at which choices made by actors, in response to internal or external stresses or triggers, determine whether and in what ways the pathway is followed. A set of initial branching points for our three core transition pathways is identified through project and stakeholder workshops, and drawing on analysis of actors’ choices and responses at past branching points in energy system transitions. The potential responses of the actors are identified at these branching points, and risk mitigation strategies are formulated for the dominant actors to reinforce that pathway, as well as opportunities for actors to move away from the pathway. - Highlights: Transition Pathways is analysing three potential pathways to a low carbon future. ► Stresses lead to branching points, where actors make choices, creating pathways. ► These choices may lead to path-dependency. ► Differences in governance logics within transition pathways are also analysed. ► Studying branching points adds theoretical understanding and policy relevance to TP.

  19. Anaerobic central metabolic pathways active during polyhydroxyalkanoate production in uncultured cluster 1 Defluviicoccus enriched in activated sludge communities.

    Science.gov (United States)

    Burow, Luke C; Mabbett, Amanda N; Borrás, Luis; Blackall, Linda L

    2009-09-01

    A glycogen nonpolyphosphate-accumulating organism (GAO) enrichment culture dominated by the Alphaproteobacteria cluster 1 Defluviicoccus was investigated to determine the metabolic pathways involved in the anaerobic formation of polyhydroxyalkanoates, carbon storage polymers important for the proliferation of microorganisms in enhanced biological phosphorus removal processes. FISH-microautoradiography and post-FISH fluorescent chemical staining confirmed acetate assimilation as polyhydroxyalkanoates in cluster 1 Defluviicoccus under anaerobic conditions. Chemical inhibition of glycolysis using iodoacetate, and of isocitrate lyase by 3-nitropropionate and itaconate, indicated that carbon is likely to be channelled through both glycolysis and the glyoxylate cycle in cluster 1 Defluviicoccus. The effect of metabolic inhibitors of aconitase (monofluoroacetate) and succinate dehydrogenase (malonate) suggested that aconitase, but not succinate dehydrogenase, was active, providing further support for the role of the glyoxylate cycle in these GAOs. Metabolic inhibition of fumarate reductase using oxantel decreased polyhydroxyalkanoate production. This indicated reduction of fumarate to succinate and the operation of the reductive branch of the tricarboxylic acid cycle, which is possibly important in the production of the polyhydroxyvalerate component of polyhydroxyalkanoates observed in cluster 1 Defluviicoccus enrichment cultures. These findings were integrated with previous metabolic models for GAOs and enabled an anaerobic central metabolic pathway model for polyhydroxyalkanoate formation in cluster 1 Defluviicoccus to be proposed. PMID:19622073

  20. Pathways from and Crises after Communism: the Case of Central Eastern Europe

    Directory of Open Access Journals (Sweden)

    SZELENYI, Ivan

    2014-12-01

    Full Text Available The transition from socialist redistributive economy to capitalist markets has proved to be a rockier road that anticipated. The degree and character of difficulties that the countries faced during the transition depended on the nature of the pathways taken. In this paper I distinguish three major trajectories various countries followed: Central European neo-liberalism; post USSR neo-patrimonial regime and the East Asian (Chinese and Vietnamese transformation from below. Rather than distinguishing the “right way” from the “wrong way” I explore what the different costs and benefits of the various pathways were at various stages of the transformation.

  1. Turning sunlight into stone: the oxalate-carbonate pathway in a tropical tree ecosystem

    OpenAIRE

    G. Cailleau; Braissant, O; E. P. Verrecchia

    2011-01-01

    An African oxalogenic tree, the iroko tree (Milicia excelsa), has the property to enhance carbonate precipitation in tropical oxisols, where such accumulations are not expected due to the theoretical acidic conditions of these soils. This uncommon process is linked to the oxalate-carbonate pathway, which increases soil pH through oxalate oxidation. In order to investigate the oxalate-carbonate pathway in the iroko system, fluxes of matter have been identified, described, and evaluated from fi...

  2. Turning sunlight into stone: the oxalate-carbonate pathway in a tropical tree ecosystem

    OpenAIRE

    G. Cailleau; Braissant, O; E. P. Verrecchia

    2011-01-01

    An African oxalogenic tree, the iroko tree (Milicia excelsa), has the property to enhance carbonate precipitation in tropical oxisols, where such accumulations are not expected due to the acidic conditions in these types of soils. This uncommon process is linked to the oxalate-carbonate pathway, which increases soil pH through oxalate oxidation. In order to investigate the oxalate-carbonate pathway in the iroko system, fluxes of matter have been identified, described, and e...

  3. Turning sunlight into stone: the oxalate-carbonate pathway in a tropical tree ecosystem

    OpenAIRE

    G. Cailleau; Braissant, O.; Verrecchia, E.P.

    2011-01-01

    An African oxalogenic tree, the iroko tree (Milicia excelsa), has the property to enhance carbonate precipitation in tropical oxisols, where such accumulations are not expected due to the acidic conditions in these types of soils. This uncommon process is linked to the oxalate-carbonate pathway, which increases soil pH through oxalate oxidation. In order to investigate the oxalate-carbonate pathway in the iroko system, fluxes of matter have been identified, described, and ev...

  4. Carbon and oxygen isotope compositions of the carbonate facies in the Vindhyan Supergroup, central India

    Indian Academy of Sciences (India)

    S Banerjee; S K Bhattacharya; S Sarkar

    2006-02-01

    The Vindhyan sedimentary succession in central India spans a wide time bracket from the Paleopro- terozoic to the Neoproterozoic period.Chronostratigraphic significance of stable carbon and oxygen isotope ratios of the carbonate phase in Vindhyan sediments has been discussed in some recent studies.However,the subtle controls of facies variation,depositional setting and post-depositional diagenesis on stable isotope compositions are not yet clearly understood.The Vindhyan Super- group hosts four carbonate units,exhibiting a wide variability in depositional processes and paleogeography.A detailed facies-specific carbon and oxygen isotope study of the carbonate units was undertaken by us to investigate the effect of these processes and to identify the least altered isotope values.It is seen that both carbon and oxygen isotope compositions have been affected by early meteoric water diagenesis.The effect of diagenetic alteration is,however,more pronounced in case of oxygen isotopes than carbon isotopes.Stable isotope compositions remained insensitive to facies only when sediments accumulated in a shallow shelf setting without being exposed.Major alteration of original isotope ratios was observed in case of shallow marine carbonates,which became exposed to meteoric fluids during early diagenetic stage.Duration of exposure possibly determined the magnitude of alteration and shift from the original values.Moreover,dolomitization is found to be accompanied by appreciable alteration of isotope compositions in some of the carbonates.The present study suggests that variations in sediment depositional settings,in particular the possibility of subaerial exposure,need to be considered while extracting chronostratigraphic signi ficance from 13C data.

  5. The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of l-Phenylalanine, l-Tyrosine, and 3-Hydroxyphenylacetate in Pseudomonas putida

    OpenAIRE

    Arias-Barrau, Elsa; Olivera, Elías R.; Luengo, José M.; Fernández, Cristina; Galán, Beatriz; García, José L.; Díaz, Eduardo; Miñambres, Baltasar

    2004-01-01

    Pseudomonas putida metabolizes Phe and Tyr through a peripheral pathway involving hydroxylation of Phe to Tyr (PhhAB), conversion of Tyr into 4-hydroxyphenylpyruvate (TyrB), and formation of homogentisate (Hpd) as the central intermediate. Homogentisate is then catabolized by a central catabolic pathway that involves three enzymes, homogentisate dioxygenase (HmgA), fumarylacetoacetate hydrolase (HmgB), and maleylacetoacetate isomerase (HmgC), finally yielding fumarate and acetoacetate. Wherea...

  6. Simulation of permeability evolution of leakage pathway in carbonate-rich caprocks in carbon sequestration

    Science.gov (United States)

    Guo, B.; Fitts, J. P.; Dobossy, M. E.; Peters, C. A.

    2013-12-01

    Geologic carbon sequestration in deep saline aquifers is a promising strategy for mitigating climate change. A major concern is the possibility of brine and CO2 migration through the caprock such as through fractures and faults. In this work, we examine the extent to which mineral dissolution will substantially alter the porosity and permeability of caprock leakage pathways as CO2-acidified brine flows through them. Three models were developed. Firstly, a reactive transport model, Permeability Evolution of Leakage pathway (PEL), was developed to simulate permeability evolution of a leakage pathway during the injection period, and assumes calcite is the only reactive mineral. The system domain is a 100 m long by 0.2 m diameter cylindrical flow path with fixed boundaries containing a rock matrix with an initial porosity of 30% and initial permeability of 1×10-13 m2. One example result is for an initial calcite volume fraction (CVF) of 0.20, in which all the calcite is dissolved after 50 years and the permeability reaches 3.2×10-13 m2. For smaller values of CVF, the permeability reaches its final value earlier but the increase in permeability is minimal. For a large value of CVF such as 0.50, the permeability could eventually reach 1×10-12 m2, but the large amount of dissolved calcium buffers the solution and slows the reaction. After 50 years the permeability change is negligible. Thus, there is a non-monotonic relationship between the amount of calcite in the rock and the resulting permeability change because of the competing dynamics of calcite dissolution and alkalinity build-up. In the second model, PEL was coupled to an existing basin-scale multiphase flow model, Princeton's Estimating Leakage Semi-Analytical (ELSA) model. The new model, ELSA-PEL, estimates the brine and CO2 leakage rates during the injection period under conditions of permeability evolution. The scenario considered in this work is for 50 years of CO2 injection into the Mt. Simon formation in

  7. Climate Change in Central and West Asia. Routes to a More Secure, Low-Carbon Future

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2010-11-15

    ADB's Central and West Asian countries are Afghanistan, Armenia, Azerbaijan, Georgia, Kazakhstan, the Kyrgyz Republic, Pakistan, Tajikistan, Turkmenistan, and Uzbekistan. Geoclimatic and environmental factors make this region highly vulnerable to the risks and hazards of climate change. For example, accelerated glacial melt has serious implications for agriculture, water supply, and energy generation - problems exacerbated by overexploitation of natural resources. Countries may find it difficult to shift to low-carbon growth, since many have abundant fossil fuel and tend to use energy inefficiently. ADB is responding to these climate hazards and low-carbon pathways with a comprehensive strategy that strengthens policies, governance, and capacity support; expands the use of clean and renewable energy; encourages sustainable transport and urban development; promotes development that will be more resilient to climate change, especially in water-dependent sectors; and manages land use and forests for carbon sequestration. ADB's support is helping its developing member countries face the challenges of climate change and, with partners, is providing innovative solutions, while continuing to work to reduce poverty.

  8. Carbon dioxide and methane emission dynamics in central London (UK)

    Science.gov (United States)

    Helfter, Carole; Nemitz, Eiko; Barlow, Janet F.; Wood, Curtis R.

    2013-04-01

    London, with a population of 8.2 million, is the largest city in Europe. It is heavily built-up (typically 8% vegetation cover within the central boroughs) and boasts some of the busiest arteries in Europe despite efforts to reduce traffic in the city centre with the introduction of a congestion charging scheme in 2007. We report on two substantial pollution monitoring efforts in the heart of London between October 2006 and present. Fluxes of carbon dioxide (CO2) and water (H2O) were measured continuously by eddy-covariance in central London from October 2006 until May 2008 from a 190 m telecommunication tower (BT tower; 51° 31' 17.4'' N 0° 8' 20.04'' W). The eddy-covariance system consisted of a Gill R3-50 ultrasonic anemometer operated at 20 Hz and a LI-COR 6262 infrared gas analyser. Air was sampled 0.3 m below the sensor head of the ultrasonic anemometer - which was itself mounted on a 3 m mast to the top of a 15 m lattice tower situated on the roof of the tower (instrument head at 190 m above street level) - and pulled down 45 m of 12.7 mm OD Teflon tubing. In addition, meteorological variables (temperature, relative humidity, pressure, precipitation, wind speed and direction) were also measured with a multi-sensor (Weather Transmitter WXT510, Vaisala). Eddy-covariance measurements at the BT tower location were reinstated in July 2011 and include methane (CH4), CO2 and H2O concentrations measured by a Picarro fast methane analyser (G2301-f). CO2 emissions were found to be mainly controlled by fossil fuel combustion (e.g. traffic, commercial and domestic heating). Diurnal averages of CO2 fluxes were found to be highly correlated to traffic. However changes in heating-related natural gas consumption and, to a lesser extent, photosynthetic activity in two large city centre green spaces (Hyde Park and Regent's Park) explained the seasonal variability. Annual estimates of net exchange of CO2 obtained by eddy-covariance agreed well with up-scaled data from the UK

  9. Carbon Assimilation Pathways, Water Relationships and Plant Ecology.

    Science.gov (United States)

    Etherington, John R.

    1988-01-01

    Discusses between-species variation in adaptation of the photosynthetic mechanism to cope with wide fluctuations of environmental water regime. Describes models for water conservation in plants and the role of photorespiration in the evolution of the different pathways. (CW)

  10. Dependency of climate change and carbon cycle on CO2 emission pathways

    International Nuclear Information System (INIS)

    Previous research has indicated that the response of globally average temperature is approximately proportional to cumulative CO2 emissions, yet evidence of the robustness of this relationship over a range of CO2 emission pathways is lacking. To address this, we evaluate the dependency of climate and carbon cycle change on CO2 emission pathways using a fully coupled climate–carbon cycle model. We design five idealized pathways (including an overshoot scenario for cumulative emissions), each of which levels off to final cumulative emissions of 2000 GtC. The cumulative emissions of the overshoot scenario reach 4000 GtC temporarily, subsequently reducing to 2000 GtC as a result of continuous negative emissions. Although we find that responses of climatic variables and the carbon cycle are largely independent of emission pathways, a much weakened Atlantic meridional overturning circulation (AMOC) is projected in the overshoot scenario despite cessation of emissions. This weakened AMOC is enhanced by rapid warming in the Arctic region due to considerable temporary elevation of atmospheric CO2 concentration and induces the decline of surface air temperature and decrease of precipitation over the northern Atlantic and Europe region. Moreover, the weakened AMOC reduces CO2 uptake by the Atlantic and Arctic oceans. However, the weakened AMOC contributes little to the global carbon cycle. In conclusion, although climate variations have been found to be dependent on emission pathways, the global carbon cycle is relatively independent of these emission pathways, at least superficially. (letter)

  11. Emergence of tuning to natural stimulus statistics along the central auditory pathway.

    Directory of Open Access Journals (Sweden)

    Jose A Garcia-Lazaro

    Full Text Available We have previously shown that neurons in primary auditory cortex (A1 of anaesthetized (ketamine/medetomidine ferrets respond more strongly and reliably to dynamic stimuli whose statistics follow "natural" 1/f dynamics than to stimuli exhibiting pitch and amplitude modulations that are faster (1/f(0.5 or slower (1/f(2 than 1/f. To investigate where along the central auditory pathway this 1/f-modulation tuning arises, we have now characterized responses of neurons in the central nucleus of the inferior colliculus (ICC and the ventral division of the mediate geniculate nucleus of the thalamus (MGV to 1/f(γ distributed stimuli with γ varying between 0.5 and 2.8. We found that, while the great majority of neurons recorded from the ICC showed a strong preference for the most rapidly varying (1/f(0.5 distributed stimuli, responses from MGV neurons did not exhibit marked or systematic preferences for any particular γ exponent. Only in A1 did a majority of neurons respond with higher firing rates to stimuli in which γ takes values near 1. These results indicate that 1/f tuning emerges at forebrain levels of the ascending auditory pathway.

  12. Poliovirus trafficking toward central nervous system via human poliovirus receptor-dependent and -independent pathway.

    Directory of Open Access Journals (Sweden)

    Seii eOHKA

    2012-04-01

    Full Text Available In humans, paralytic poliomyelitis results from the invasion of the central nervous system by circulating poliovirus (PV via the blood-brain barrier (BBB. After the virus enters the central nervous system (CNS, it replicates in neurons, especially in motor neurons (MNs, inducing the cell death that causes paralytic poliomyelitis. Along with this route of dissemination, neural pathway has been reported in humans, monkeys, and PV-sensitive human PV receptor (hPVR/CD155-transgenic (Tg mice. We demonstrated that a fast retrograde axonal transport process is required for PV dissemination through the sciatic nerve of hPVR-Tg mice and that intramuscularly inoculated PV causes paralysis in a hPVR-dependent manner. We also showed that hPVR-independent axonal transport of PV exists in hPVR-Tg and non-Tg mice, indicating that several different pathways for PV axonal transport exist in these mice. Circulating PV after intravenous inoculation in mice cross the BBB at a high rate in a hPVR-independent manner. Recently, we identified transferrin receptor 1 (TfR1 of mouse brain capillary endothelial cells as a binding protein to PV, implicating that TfR1 is a possible receptor for PV to permeate the BBB.

  13. Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs

    OpenAIRE

    Mayumi, Daisuke; Dolfing, Jan; Sakata, Susumu; Maeda, Haruo; Miyagawa, Yoshihiro; Ikarashi, Masayuki; Tamaki, Hideyuki; Takeuchi, Mio; Nakatsu, Cindy H.; Kamagata, Yoichi

    2013-01-01

    Deep subsurface formations (for example, high-temperature oil reservoirs) are candidate sites for carbon capture and storage technology. However, very little is known about how the subsurface microbial community would respond to an increase in CO2 pressure resulting from carbon capture and storage. Here we construct microcosms mimicking reservoir conditions (55 °C, 5 MPa) using high-temperature oil reservoir samples. Methanogenesis occurs under both high and low CO2 conditions in the microcos...

  14. Turning sunlight into stone: the oxalate-carbonate pathway in a tropical tree ecosystem

    Directory of Open Access Journals (Sweden)

    G. Cailleau

    2011-07-01

    Full Text Available An African oxalogenic tree, the iroko tree (Milicia excelsa, has the property to enhance carbonate precipitation in tropical oxisols, where such accumulations are not expected due to the acidic conditions in these types of soils. This uncommon process is linked to the oxalate-carbonate pathway, which increases soil pH through oxalate oxidation. In order to investigate the oxalate-carbonate pathway in the iroko system, fluxes of matter have been identified, described, and evaluated from field to microscopic scales. In the first centimeters of the soil profile, decaying of the organic matter allows the release of whewellite crystals, mainly due to the action of termites and saprophytic fungi. In addition, a concomitant flux of carbonate formed in wood tissues contributes to the carbonate flux and is identified as a direct consequence of wood feeding by termites. Nevertheless, calcite biomineralization of the tree is not a consequence of in situ oxalate consumption, but rather related to the oxalate oxidation inside the upper part of the soil. The consequence of this oxidation is the presence of carbonate ions in the soil solution pumped through the roots, leading to preferential mineralization of the roots and the trunk base. An ideal scenario for the iroko biomineralization and soil carbonate accumulation starts with oxalatization: as the iroko tree grows, the organic matter flux to the soil constitutes the litter, and an oxalate pool is formed on the forest ground. Then, wood rotting agents (mainly termites, saprophytic fungi, and bacteria release significant amounts of oxalate crystals from decaying plant tissues. In addition, some of these agents are themselves producers of oxalate (e.g. fungi. Both processes contribute to a soil pool of "available" oxalate crystals. Oxalate consumption by oxalotrophic bacteria can then start. Carbonate and calcium ions present in the soil solution represent the end products of the oxalate-carbonate

  15. Turning sunlight into stone: the oxalate-carbonate pathway in a tropical tree ecosystem

    Directory of Open Access Journals (Sweden)

    G. Cailleau

    2011-02-01

    Full Text Available An African oxalogenic tree, the iroko tree (Milicia excelsa, has the property to enhance carbonate precipitation in tropical oxisols, where such accumulations are not expected due to the theoretical acidic conditions of these soils. This uncommon process is linked to the oxalate-carbonate pathway, which increases soil pH through oxalate oxidation. In order to investigate the oxalate-carbonate pathway in the iroko system, fluxes of matter have been identified, described, and evaluated from field to microscopic scales. In the first centimeters of the soil profile, decaying of the organic matter allows the release of whewellite crystals, mainly due to the action of termites and saprophytic fungi. Regarding the carbonate flux, another direct consequence of wood feeding is a concomitant flux of carbonate formed in wood tissues, which is not consumed by termites. Nevertheless, calcite biomineralization of the tree is not a consequence of in situ oxalate consumption, but rather related to the oxalate oxidation inside the upper part of the soil. The consequence of this oxidation is the presence of carbonate ions in the soil solution pumped through the roots, leading to preferential mineralization of the roots and the trunk base. An ideal scenario for the iroko biomineralization and soil carbonate accumulation starts with oxalatization: as the iroko tree grows, the organic matter flux to the soil constitutes the litter. Therefore, an oxalate pool is formed on the forest ground. Then, wood rotting gents (mainly termites, fungi, and bacteria release significant amounts of oxalate crystals from decaying plant tissues. In addition some of these gents are themselves producers of oxalate (fungi. Both processes contribute to a soil pool of "available" oxalate crystals. Oxalate consumption by oxalotrophic bacteria can start. Carbonate and calcium ions present in the soil solution represent the end products of the oxalate-carbonate pathway. The solution is pumped

  16. Turning sunlight into stone: the oxalate-carbonate pathway in a tropical tree ecosystem

    Science.gov (United States)

    Cailleau, G.; Braissant, O.; Verrecchia, E. P.

    2011-07-01

    An African oxalogenic tree, the iroko tree (Milicia excelsa), has the property to enhance carbonate precipitation in tropical oxisols, where such accumulations are not expected due to the acidic conditions in these types of soils. This uncommon process is linked to the oxalate-carbonate pathway, which increases soil pH through oxalate oxidation. In order to investigate the oxalate-carbonate pathway in the iroko system, fluxes of matter have been identified, described, and evaluated from field to microscopic scales. In the first centimeters of the soil profile, decaying of the organic matter allows the release of whewellite crystals, mainly due to the action of termites and saprophytic fungi. In addition, a concomitant flux of carbonate formed in wood tissues contributes to the carbonate flux and is identified as a direct consequence of wood feeding by termites. Nevertheless, calcite biomineralization of the tree is not a consequence of in situ oxalate consumption, but rather related to the oxalate oxidation inside the upper part of the soil. The consequence of this oxidation is the presence of carbonate ions in the soil solution pumped through the roots, leading to preferential mineralization of the roots and the trunk base. An ideal scenario for the iroko biomineralization and soil carbonate accumulation starts with oxalatization: as the iroko tree grows, the organic matter flux to the soil constitutes the litter, and an oxalate pool is formed on the forest ground. Then, wood rotting agents (mainly termites, saprophytic fungi, and bacteria) release significant amounts of oxalate crystals from decaying plant tissues. In addition, some of these agents are themselves producers of oxalate (e.g. fungi). Both processes contribute to a soil pool of "available" oxalate crystals. Oxalate consumption by oxalotrophic bacteria can then start. Carbonate and calcium ions present in the soil solution represent the end products of the oxalate-carbonate pathway. The solution is

  17. Demonstration of prosthetic activation of central auditory pathways using ( sup 14 C)-2-deoxyglucose

    Energy Technology Data Exchange (ETDEWEB)

    Evans, D.A.; Niparko, J.K.; Altschuler, R.A.; Frey, K.A.; Miller, J.M. (Univ. of Michigan Medical Center, Ann Arbor (USA))

    1990-02-01

    The cochlear prosthesis is not applicable to patients who lack an implantable cochlea or an intact vestibulocochlear nerve. Direct electrical stimulation of the cochlear nucleus (CN) of the brain stem might provide a method for auditory rehabilitation of these patients. A penetrating CN electrode has been developed and tissue tolerance to this device demonstrated. This study was undertaken to evaluate metabolic activation of central nervous system (CNS) auditory tracts produced by such implants. Regional cerebral glucose use resulting from CN stimulation was estimated in a series of chronically implanted guinea pigs with the use of ({sup 14}C)-2-deoxyglucose (2-DG). Enhanced 2-DG uptake was observed in structures of the auditory tract. The activation of central auditory structures achieved with CN stimulation was similar to that produced by acoustic stimulation and by electrical stimulation of the modiolar portion of the auditory nerve in control groups. An interesting banding pattern was observed in the inferior colliculus following CN stimulation, as previously described with acoustic stimulation. This study demonstrates that functional metabolic activation of central auditory pathways can be achieved with a penetrating CNS auditory prosthesis.

  18. Demonstration of prosthetic activation of central auditory pathways using [14C]-2-deoxyglucose

    International Nuclear Information System (INIS)

    The cochlear prosthesis is not applicable to patients who lack an implantable cochlea or an intact vestibulocochlear nerve. Direct electrical stimulation of the cochlear nucleus (CN) of the brain stem might provide a method for auditory rehabilitation of these patients. A penetrating CN electrode has been developed and tissue tolerance to this device demonstrated. This study was undertaken to evaluate metabolic activation of central nervous system (CNS) auditory tracts produced by such implants. Regional cerebral glucose use resulting from CN stimulation was estimated in a series of chronically implanted guinea pigs with the use of [14C]-2-deoxyglucose (2-DG). Enhanced 2-DG uptake was observed in structures of the auditory tract. The activation of central auditory structures achieved with CN stimulation was similar to that produced by acoustic stimulation and by electrical stimulation of the modiolar portion of the auditory nerve in control groups. An interesting banding pattern was observed in the inferior colliculus following CN stimulation, as previously described with acoustic stimulation. This study demonstrates that functional metabolic activation of central auditory pathways can be achieved with a penetrating CNS auditory prosthesis

  19. Funding pathways to a low-carbon transition

    Science.gov (United States)

    Foulds, Chris; Christensen, Toke Haunstrup

    2016-07-01

    The framing of funding programmes can sustain existing ways of conceptualizing particular problems, as well as create new ones. Yet, without more prominent roles for social sciences and humanities, the techno-economic conceptualization of energy consumers could hinder long-term low-carbon aspirations.

  20. An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis

    OpenAIRE

    Poehlein, Anja; Schmidt, Silke; Kaster, Anne-Kristin; Goenrich, Meike; Vollmers, John; Thürmer, Andrea; Bertsch, Johannes; Schuchmann, Kai; Voigt, Birgit; Hecker, Michael; Daniel, Rolf; Thauer, Rudolf K.; Gottschalk, Gerhard; Müller, Volker

    2012-01-01

    Synthesis of acetate from carbon dioxide and molecular hydrogen is considered to be the first carbon assimilation pathway on earth. It combines carbon dioxide fixation into acetyl-CoA with the production of ATP via an energized cell membrane. How the pathway is coupled with the net synthesis of ATP has been an enigma. The anaerobic, acetogenic bacterium Acetobacterium woodii uses an ancient version of this pathway without cytochromes and quinones. It generates a sodium ion potenti...

  1. Carbon and oxygen isotope geochemistry of Ediacaran outer platform carbonates, Paraguay Belt, central Brazil

    Directory of Open Access Journals (Sweden)

    Claudio Riccomini

    2007-09-01

    Full Text Available After the late Cryogenian glaciation the central region of Brazil was the site of extensive deposition of platformal carbonates of the Araras Group. This group includes a basal cap carbonate sequence succeeded by transgressive, deep platform deposits of bituminous lime mudstone and shale. Facies and stratigraphic data combined with carbon and oxygen isotopic analyses of the most complete section of the transgressive deposits, exposed in the Guia syncline, were used to evaluate the depositional paleoenvironment and to test the correlation of these deposits along the belt and with other units worldwide. The studied succession consists of 150 m thick tabular beds of black to grey lime mudstone and shale with predominantly negative delta13C PDB values around -2.5 to -1‰ . The delta13C PDB profile of Guia syncline shows a clear correlation with the upper portion of Guia Formation in the Cáceres region, about 200 km to the southwest. The delta13C PDB profile of the Araras Group is comparable with delta13C PDB profiles of Ediacaran units of the southern Paraguay Belt, western Canada, and the Congo and Kalahari cratons. Moreover, facies distribution, stratigraphy and the carbon isotopic profile of the Araras Group match the middle Tsumeb Subgroup in Namibia, which reinforces the Ediacaran age assigned to the Araras Group.Após a glaciação do final do Criogeniano, a região central do Brasil foi palco de extensa deposição de carbonatos plataformais do Grupo Araras. Este grupo inclui na sua base uma seqüência de capa carbonática sucedida por depósitos transgressivos de calcilutitos betuminosos e folhelhos de plataforma profunda. Dados de fácies e estratigráficos combinados com análises isotópicas de carbono e oxigênio da seção mais completa desses depósitos transgressivos, expostos no sinclinal da Guia, foram empregados para avaliar o paleambiente deposicional e para testar a correlação desses depósitos ao longo da faixa e tamb

  2. MPTP's pathway of toxicity indicates central role of transcription factor SP1.

    Science.gov (United States)

    Maertens, Alexandra; Luechtefeld, Thomas; Kleensang, Andre; Hartung, Thomas

    2015-05-01

    Deriving a Pathway of Toxicity from transcriptomic data remains a challenging task. We explore the use of weighted gene correlation network analysis (WGCNA) to extract an initial network from a small microarray study of MPTP toxicity in mice. Five modules were statistically significant; each module was analyzed for gene signatures in the Chemical and Genetic Perturbation subset of the Molecular Signatures Database as well as for over-represented transcription factor binding sites and WGCNA clustered probes by function and captured pathways relevant to neurodegenerative disorders. The resulting network was analyzed for transcription factor candidates, which were narrowed down via text-mining for relevance to the disease model, and then combined with the large-scale interaction FANTOM4 database to generate a genetic regulatory network. Modules were enriched for transcription factors relevant to Parkinson's disease. Transcription factors significantly improved the number of genes that could be connected in a given component. For each module, the transcription factor that had, by far, the highest number of interactions was SP1, and it also had substantial experimental evidence of interactions. This analysis both captures much of the known biology of MPTP toxicity and suggests several candidates for further study. Furthermore, the analysis strongly suggests that SP1 plays a central role in coordinating the cellular response to MPTP toxicity. PMID:25851821

  3. Seasonal variations in inorganic carbon components in the central and eastern Arabian Sea

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, V.V.S.S.; DileepKumar, M.; George, M.D.; Rajendran, A.

    of carbon dioxide to atmosphere reached a maximum of approx 40 m mole m sup(-2) d sup(-1) around 16 degrees N in the central Arabian SEa during monsoon season. The carbon dioxide regenerated from soft tissue was higher during winter and is the least...

  4. The oxalate-carbonate pathway: at the interface between biology and geology

    Science.gov (United States)

    Junier, P.; Cailleau, G.; Martin, G.; Guggiari, M.; Bravo, D.; Clerc, M.; Aragno, M.; Job, D.; Verrecchia, E.

    2012-04-01

    The formation of calcite in otherwise carbonate-free acidic soils through the biological degradation of oxalate is a mechanism termed oxalate-carbonate pathway. This pathway lies at the interface between biological and geological systems and constitutes an important, although underestimated, soil mineral carbon sink. In this case, atmospheric CO2 is fixed by the photosynthetic activity of oxalogenic plants, which is partly destined to the production of oxalate used for the chelation of metals, and particularly, calcium. Fungi are also able to produce oxalate to cope with elevated concentrations of metals. In spite of its abundance as a substrate, oxalate is a very stable organic anion that can be metabolized only by a group of bacteria that use it as carbon and energy sources. These bacteria close the biological cycle by degrading calcium oxalate, releasing Ca2+ and inducing a change in local soil pH. If parameters are favourable, the geological part of the pathway begins, because this change in pH will indirectly lead to the precipitation of secondary calcium carbonate (calcite) in unexpected geological conditions. Due to the initial acidic soil conditions, and the absence of geological carbonate in the basement, it is unexpected to find C in the form of calcite. The activity of the oxalate-carbonate pathway has now been demonstrated in several places around the world, suggesting that its importance can be even greater than expected. In addition, new roles for each of the biological players of the pathway have been revealed recently forcing us to reconsider a global biogeochemical model for oxalate cycling.

  5. Advances in mechanisms and signaling pathways of carbon nanotube toxicity

    OpenAIRE

    Dong, Jie; Ma, Qiang

    2015-01-01

    Carbon nanotubes (CNT) have been developed into new materials with a variety of industrial and commercial applications. In contrast, the physicochemical properties of CNT at the nanoscale render them the potency to generate toxic effects. Indeed, the potential health impacts of CNT have drawn a great deal of attention in recent years, owing to their identified toxicological and pathological consequences including cytotoxicity, inflammation, fibrosis, genotoxicity, tumorigenesis, and immunotox...

  6. Activation of locus coeruleus heme oxygenase-carbon monoxide pathway promoted an anxiolytic-like effect in rats

    Science.gov (United States)

    Carvalho-Costa, P.G.; Branco, L.G.S.; Leite-Panissi, C.R.A.

    2016-01-01

    The heme oxygenase-carbon monoxide pathway has been shown to play an important role in many physiological processes and is capable of altering nociception modulation in the nervous system by stimulating soluble guanylate cyclase (sGC). In the central nervous system, the locus coeruleus (LC) is known to be a region that expresses the heme oxygenase enzyme (HO), which catalyzes the metabolism of heme to carbon monoxide (CO). Additionally, several lines of evidence have suggested that the LC can be involved in the modulation of emotional states such as fear and anxiety. The purpose of this investigation was to evaluate the activation of the heme oxygenase-carbon monoxide pathway in the LC in the modulation of anxiety by using the elevated plus maze test (EPM) and light-dark box test (LDB) in rats. Experiments were performed on adult male Wistar rats weighing 250-300 g (n=182). The results showed that the intra-LC microinjection of heme-lysinate (600 nmol), a substrate for the enzyme HO, increased the number of entries into the open arms and the percentage of time spent in open arms in the elevated plus maze test, indicating a decrease in anxiety. Additionally, in the LDB test, intra-LC administration of heme-lysinate promoted an increase on time spent in the light compartment of the box. The intracerebroventricular microinjection of guanylate cyclase, an sGC inhibitor followed by the intra-LC microinjection of the heme-lysinate blocked the anxiolytic-like reaction on the EPM test and LDB test. It can therefore be concluded that CO in the LC produced by the HO pathway and acting via cGMP plays an anxiolytic-like role in the LC of rats. PMID:27074170

  7. Activation of locus coeruleus heme oxygenase-carbon monoxide pathway promoted an anxiolytic-like effect in rats

    Directory of Open Access Journals (Sweden)

    P.G. Carvalho-Costa

    2016-01-01

    Full Text Available The heme oxygenase-carbon monoxide pathway has been shown to play an important role in many physiological processes and is capable of altering nociception modulation in the nervous system by stimulating soluble guanylate cyclase (sGC. In the central nervous system, the locus coeruleus (LC is known to be a region that expresses the heme oxygenase enzyme (HO, which catalyzes the metabolism of heme to carbon monoxide (CO. Additionally, several lines of evidence have suggested that the LC can be involved in the modulation of emotional states such as fear and anxiety. The purpose of this investigation was to evaluate the activation of the heme oxygenase-carbon monoxide pathway in the LC in the modulation of anxiety by using the elevated plus maze test (EPM and light-dark box test (LDB in rats. Experiments were performed on adult male Wistar rats weighing 250-300 g (n=182. The results showed that the intra-LC microinjection of heme-lysinate (600 nmol, a substrate for the enzyme HO, increased the number of entries into the open arms and the percentage of time spent in open arms in the elevated plus maze test, indicating a decrease in anxiety. Additionally, in the LDB test, intra-LC administration of heme-lysinate promoted an increase on time spent in the light compartment of the box. The intracerebroventricular microinjection of guanylate cyclase, an sGC inhibitor followed by the intra-LC microinjection of the heme-lysinate blocked the anxiolytic-like reaction on the EPM test and LDB test. It can therefore be concluded that CO in the LC produced by the HO pathway and acting via cGMP plays an anxiolytic-like role in the LC of rats.

  8. CARBON MONOXIDE: ITS ROLE IN MITOCHONDRIAL PATHWAY OF APOPTOSIS INDUCTION IN JURKAT CANCER CELLS

    Directory of Open Access Journals (Sweden)

    E. G. Starikova

    2014-07-01

    Full Text Available  Abstract. This study demonstrates ability of carbon monoxide to trigger mitochondrial pathway of apoptosis induction of Jurcat cells. We have shown that proapoptotic action of carbon monoxide is coupled to permeabilization of cellular mitochondrial membranes. Imbalance in Bcl-2 family of regulatory proteins may be considered among possible reasons of the membrane pore formation. We have shown downregulated cl-2 and Bcl-xl mRNA expression and decreased levels of antiapoptotic proteins, along wih decreased mRNA expression and increase of Bad proapototic protein level in Jurkat cells following incubation with 50 μm of CORM-2, a carbon monoxide donor.

  9. Metabolome analysis and pathway abundance profiling of Yarrowia lipolytica cultivated on different carbon sources.

    Science.gov (United States)

    Zhao, Chen; Gu, Deqing; Nambou, Komi; Wei, Liujing; Chen, Jun; Imanaka, Tadayuki; Hua, Qiang

    2015-07-20

    Yarrowia lipolytica, a model microorganism of oleaginous yeasts with developed sophisticated genetic tools, is able to metabolize a wide range of substrates and accumulate large amounts of lipids. However, there is a lack of literature reporting the metabolic characteristics of Y. lipolytica metabolizing these substrates in a systematic view. In this study, Y. lipolytica was cultivated on a variety of carbon sources, among which cell growth and production characteristics on two representative substrates (glucose and oleic acid) were investigated in detail at metabolomic level. Metabolic pathway abundance was computed to interpret the metabolome data in a straightforward way. The results showed that most pathway abundances decreased in the shift from growth to production phase. Specifically, when cultivated on glucose, abundances of twelve pathways decreased markedly between the growth and lipid production phases, while thirteen pathways reduced and only three pathways increased significantly in abundances on oleic acid. In comparison, for the same cultivation phase only a few pathways exhibited significant changes between glucose-grown and oleic acid-grown cells. This study revealed that the pathway abundance could be used to effectively show the activity changes of pathways, providing a new perspective to employ metabolomics data for understanding cell metabolism and enhancing the production of target metabolites. PMID:25912211

  10. Optogenetic stimulation of the cochlear nucleus using channelrhodopsin-2 evokes activity in the central auditory pathway

    Science.gov (United States)

    Darrow, Keith N.; Slama, Michaël C. C.; Owoc, Maryanna; Kozin, Elliott; Hancock, Kenneth; Kempfle, Judith; Edge, Albert; Lacour, Stephanie; Boyden, Edward; Polley, Daniel; Brown, M. Christian; Lee, Daniel J.

    2016-01-01

    Optogenetics has become an important research tool and is being considered as the basis for several neural prostheses. However, few studies have applied optogenetics to the auditory brainstem. This study explored whether optical activation of the cochlear nucleus (CN) elicited responses in neurons in higher centers of the auditory pathway, and it measured the evoked response to optical stimulation. Viral-mediated gene transfer was used to express channelrhodopsin-2 (ChR2) in the mouse CN. Blue light was delivered via an optical fiber placed near the surface of the infected CN and recordings were made in higher-level centers. Optical stimulation evoked excitatory multiunit spiking activity throughout the tonotopic axis of central nucleus of the inferior colliculus (IC) and the auditory cortex (Actx). The pattern and magnitude of IC activity elicited by optical stimulation was comparable to that obtained with a 50 dB SPL acoustic click stimulus. This broad pattern of activity was consistent with histological confirmation of GFP label of cell bodies and axons throughout the CN. Increasing pulse rates up to 320 Hz did not significantly affect threshold or bandwidth of the IC responses, but rates higher than 50 Hz resulted in desynchronized activity. Optical stimulation also evoked an auditory brainstem response, which had a simpler waveform than the response to acoustic stimulation. Control cases showed no responses to optical stimulation. These data suggest that optogenetic control of central auditory neurons is feasible, but opsins with faster channel kinetics will be necessary to convey information in rates typical of many auditory signals. PMID:25481416

  11. The carbon storage regulator (Csr system exerts a nutrient-specific control over central metabolism in Escherichia coli strain Nissle 1917.

    Directory of Open Access Journals (Sweden)

    Olga Revelles

    Full Text Available The role of the post-transcriptional carbon storage regulator (Csr system in nutrient utilization and in the control of the central metabolism in E. coli reference commensal strain Nissle 1917 was investigated. Analysis of the growth capabilities of mutants altered for various components of the Csr system (csrA51, csrB, csrC and csrD mutations showed that only the protein CsrA - the key component of the system - exerts a marked role in carbon nutrition. Attenuation of CsrA activity in the csrA51 mutant affects the growth efficiency on a broad range of physiologically relevant carbon sources, including compounds utilized by the Entner-Doudoroff (ED pathway. Detailed investigations of the metabolomes and fluxomes of mutants and wild-type cells grown on carbon sources representative of glycolysis and of the ED pathway (glucose and gluconate, respectively, revealed significant re-adjusting of central carbon metabolism for both compounds in the csrA51 mutant. However, the metabolic re-adjusting observed on gluconate was strikingly different from that observed on glucose, indicating a nutrient-specific control of metabolism by the Csr system.

  12. The carbon storage regulator (Csr) system exerts a nutrient-specific control over central metabolism in Escherichia coli strain Nissle 1917.

    Science.gov (United States)

    Revelles, Olga; Millard, Pierre; Nougayrède, Jean-Philippe; Dobrindt, Ulrich; Oswald, Eric; Létisse, Fabien; Portais, Jean-Charles

    2013-01-01

    The role of the post-transcriptional carbon storage regulator (Csr) system in nutrient utilization and in the control of the central metabolism in E. coli reference commensal strain Nissle 1917 was investigated. Analysis of the growth capabilities of mutants altered for various components of the Csr system (csrA51, csrB, csrC and csrD mutations) showed that only the protein CsrA - the key component of the system - exerts a marked role in carbon nutrition. Attenuation of CsrA activity in the csrA51 mutant affects the growth efficiency on a broad range of physiologically relevant carbon sources, including compounds utilized by the Entner-Doudoroff (ED) pathway. Detailed investigations of the metabolomes and fluxomes of mutants and wild-type cells grown on carbon sources representative of glycolysis and of the ED pathway (glucose and gluconate, respectively), revealed significant re-adjusting of central carbon metabolism for both compounds in the csrA51 mutant. However, the metabolic re-adjusting observed on gluconate was strikingly different from that observed on glucose, indicating a nutrient-specific control of metabolism by the Csr system. PMID:23840455

  13. Reversal of Cytosolic One-Carbon Flux Compensates for Loss of the Mitochondrial Folate Pathway.

    Science.gov (United States)

    Ducker, Gregory S; Chen, Li; Morscher, Raphael J; Ghergurovich, Jonathan M; Esposito, Mark; Teng, Xin; Kang, Yibin; Rabinowitz, Joshua D

    2016-06-14

    One-carbon (1C) units for purine and thymidine synthesis can be generated from serine by cytosolic or mitochondrial folate metabolism. The mitochondrial 1C pathway is consistently overexpressed in cancer. Here, we show that most but not all proliferating mammalian cell lines use the mitochondrial pathway as the default for making 1C units. Clustered regularly interspaced short palindromic repeats (CRISPR)-mediated mitochondrial pathway knockout activates cytosolic 1C-unit production. This reversal in cytosolic flux is triggered by depletion of a single metabolite, 10-formyl-tetrahydrofolate (10-formyl-THF), and enables rapid cell growth in nutrient-replete conditions. Loss of the mitochondrial pathway, however, renders cells dependent on extracellular serine to make 1C units and on extracellular glycine to make glutathione. HCT-116 colon cancer xenografts lacking mitochondrial 1C pathway activity generate the 1C units required for growth by cytosolic serine catabolism. Loss of both pathways precludes xenograft formation. Thus, either mitochondrial or cytosolic 1C metabolism can support tumorigenesis, with the mitochondrial pathway required in nutrient-poor conditions. PMID:27211901

  14. Carbon Deflagration in Type Ia Supernova: I. Centrally Ignited Models

    CERN Document Server

    Ma, H; Malone, C M; Almgren, A; Bell, J B

    2013-01-01

    A leading model for Type Ia supernovae (SNe Ia) begins with a white dwarf near the Chandrasekhar mass that ignites a degenerate thermonuclear runaway close to its center and explodes. In a series of papers, we shall explore the consequences of ignition at several locations within such dwarfs. Here we assume central ignition, which has been explored before, however, the problem is worth revisiting, if only to validate those previous studies and to further elucidate the relevant physics for future work. A perturbed sphere of hot iron ash with a radius of ~100 km is initialized at the middle of the star. The subsequent explosion is followed in several simulations using a thickened flame model in which the flame speed is either fixed --- within the range expected from turbulent combustion --- or based on the local turbulent intensity. Global results, including the explosion energy and bulk nucleosynthesis (e.g. 56Ni of 0.48--0.56 $\\Msun$) turn out to be insensitive to this speed. In all completed runs, the energy...

  15. Pathway confirmation and flux analysis of central metabolicpathways in Desulfovibrio vulgaris Hildenborough using gaschromatography-mass spectrometry and fourier transform-ion cyclotronresonance mass spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Yinjie; Pingitore, Francesco; Mukhopadhyay, Aindrila; Phan,Richard; Hazen, Terry C.; Keasling, Jay D.

    2006-07-11

    It has been proposed that during growth under anaerobic oroxygen-limited conditions Shewanella oneidensis MR-1 uses theserine-isocitrate lyase pathway common to many methylotrophic anaerobes,in which formaldehyde produced from pyruvate is condensed with glycine toform serine. The serine is then transformed through hydroxypyruvate andglycerate to enter central metabolism at phosphoglycerate. To examine itsuse of the serine-isocitrate lyase pathway under anaerobic conditions, wegrew S. oneidensis MR-1 on [1-13C]lactate as the sole carbon source witheither trimethylamine N-oxide (TMAO) or fumarate as an electron acceptor.Analysis of cellular metabolites indicates that a large percentage(>75 percent) of lactate was partially oxidized to either acetate orpyruvate. The 13C isotope distributions in amino acids and other keymetabolites indicate that, under anaerobic conditions, a complete serinepathway is not present, and lactate is oxidized via a highly reversibleserine degradation pathway. The labeling data also suggest significantactivity in the anaplerotic (malic enzyme and phosphoenolpyruvatecarboxylase) and glyoxylate shunt (isocitrate lyase and malate synthase)reactions. Although the tricarboxylic acid (TCA) cycle is often observedto be incomplete in many other anaerobes (absence of 2-oxoglutaratedehydrogenase activity), isotopic labeling supports the existence of acomplete TCA cycle in S. oneidensis MR-1 under TMAO reductioncondition.

  16. Differences in the dynamic baroreflex characteristics of unmyelinated and myelinated central pathways are less evident in spontaneously hypertensive rats.

    Science.gov (United States)

    Turner, Michael J; Kawada, Toru; Shimizu, Shuji; Fukumitsu, Masafumi; Sugimachi, Masaru

    2015-12-01

    The aim of the study was to identify the contribution of myelinated (A-fiber) and unmyelinated (C-fiber) baroreceptor central pathways to the baroreflex control of sympathetic nerve activity (SNA) and arterial pressure (AP) in anesthetized Wistar-Kyoto (WKY; n = 8) and spontaneously hypertensive rats (SHR; n = 8). The left aortic depressor nerve (ADN) was electrically stimulated with two types of binary white noise signals designed to preferentially activate A-fibers (A-BRx protocol) or C-fibers (C-BRx protocol). In WKY, the central arc transfer function from ADN stimulation to SNA estimated by A-BRx showed strong derivative characteristics with the slope of dynamic gain between 0.1 and 1 Hz (Gslope) of 14.63 ± 0.89 dB/decade. In contrast, the central arc transfer function estimated by C-BRx exhibited nonderivative characteristics with Gslope of 0.64 ± 1.13 dB/decade. This indicates that A-fibers are important for rapid baroreflex regulation, whereas C-fibers are likely important for more sustained regulation of SNA and AP. In SHR, the central arc transfer function estimated by A-BRx showed higher Gslope (18.46 ± 0.75 dB/decade, P < 0.01) and that estimated by C-BRx showed higher Gslope (8.62 ± 0.64 dB/decade, P < 0.001) with significantly lower dynamic gain at 0.01 Hz (6.29 ± 0.48 vs. 2.80 ± 0.36%/Hz, P < 0.001) compared with WKY. In conclusion, the dynamic characteristics of the A-fiber central pathway are enhanced in the high-modulation frequency range (0.1-1 Hz) and those of the C-fiber central pathway are attenuated in the low-modulation frequency range (0.01-0.1 Hz) in SHR. PMID:26377561

  17. Carbon black and titanium dioxide nanoparticles elicit distinct apoptotic pathways in bronchial epithelial cells

    OpenAIRE

    Baeza-Squiban Armelle; Fleury Jocelyne; Martens Johan A; Andreau Karine; Borot Marie-Caroline; Ferecatu Ioana; Thomassen Leen CJ; Hussain Salik; Marano Francelyne; Boland Sonja

    2010-01-01

    Abstract Background Increasing environmental and occupational exposures to nanoparticles (NPs) warrant deeper insight into the toxicological mechanisms induced by these materials. The present study was designed to characterize the cell death induced by carbon black (CB) and titanium dioxide (TiO2) NPs in bronchial epithelial cells (16HBE14o- cell line and primary cells) and to investigate the implicated molecular pathways. Results Detailed time course studies revealed that both CB (13 nm) and...

  18. Atmospheric black carbon and warming effects influenced by the source and absorption enhancement in central Europe

    NARCIS (Netherlands)

    Nordmann, S.; Cheng, Y.F.; Carmichael, G.R.; Yu, M.; Denier Van Der Gon, H.A.C.; Zhang, Q.; Saide, P.E.; Pöschl, U.; Su, H.; Birmili, W.; Wiedensohler, A.

    2014-01-01

    Particles containing black carbon (BC), a strong absorbing substance, exert a rather uncertain direct and indirect radiative forcing in the atmosphere. To investigate the mass concentration and absorption properties of BC particles over central Europe, the model WRF-Chem was used at a resolution of

  19. Selective extraction of ballast carbonates from phosphorites of central Kyzyl-Kum with chemical methods

    Directory of Open Access Journals (Sweden)

    Zulfikaxor Dehkanov

    2014-11-01

    Full Text Available The enrichment of phosphorites of Central Kyzilkum containing large amount of carbonates with nitric acid allows obtaining phosphorite concentrates applicable for sulfuric acid extraction. The paper offers the optimum parameters of this process applied to phosphorite flour, mineralised mass and washed and dried phosphorite concentrates of Cental Kyzilkum`s phosphorites.

  20. The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

    Directory of Open Access Journals (Sweden)

    Jiménez-Zurdo José I

    2010-03-01

    Full Text Available Abstract Background The bacterial Hfq protein is able to interact with diverse RNA molecules, including regulatory small non-coding RNAs (sRNAs, and thus it is recognized as a global post-transcriptional regulator of gene expression. Loss of Hfq has an extensive impact in bacterial physiology which in several animal pathogens influences virulence. Sinorhizobium meliloti is a model soil bacterium known for its ability to establish a beneficial nitrogen-fixing intracellular symbiosis with alfalfa. Despite the predicted general involvement of Hfq in the establishment of successful bacteria-eukaryote interactions, its function in S. meliloti has remained unexplored. Results Two independent S. meliloti mutants, 2011-3.4 and 1021Δhfq, were obtained by disruption and deletion of the hfq gene in the wild-type strains 2011 and 1021, respectively, both exhibiting similar growth defects as free-living bacteria. Transcriptomic profiling of 1021Δhfq revealed a general down-regulation of genes of sugar transporters and some enzymes of the central carbon metabolism, whereas transcripts specifying the uptake and metabolism of nitrogen sources (mainly amino acids were more abundant than in the wild-type strain. Proteomic analysis of the 2011-3.4 mutant independently confirmed these observations. Symbiotic tests showed that lack of Hfq led to a delayed nodulation, severely compromised bacterial competitiveness on alfalfa roots and impaired normal plant growth. Furthermore, a large proportion of nodules (55%-64% elicited by the 1021Δhfq mutant were non-fixing, with scarce content in bacteroids and signs of premature senescence of endosymbiotic bacteria. RT-PCR experiments on RNA from bacteria grown under aerobic and microoxic conditions revealed that Hfq contributes to regulation of nifA and fixK1/K2, the genes controlling nitrogen fixation, although the Hfq-mediated regulation of fixK is only aerobiosis dependent. Finally, we found that some of the recently

  1. BMP and TGFbeta pathways in human central chondrosarcoma: enhanced endoglin and Smad 1 signaling in high grade tumors

    Directory of Open Access Journals (Sweden)

    Boeuf Stephane

    2012-10-01

    Full Text Available Abstract Background As major regulators of normal chondrogenesis, the bone morphogenic protein (BMP and transforming growth factor β (TGFB signaling pathways may be involved in the development and progression of central chondrosarcoma. In order to uncover their possible implication, the aim of this study was to perform a systematic quantitative study of the expression of BMPs, TGFBs and their receptors and to assess activity of the corresponding pathways in central chondrosarcoma. Methods Gene expression analysis was performed by quantitative RT-PCR in 26 central chondrosarcoma and 6 healthy articular cartilage samples. Expression of endoglin and nuclear localization of phosphorylated Smad1/5/8 and Smad2 was assessed by immunohistochemical analysis. Results The expression of TGFB3 and of the activin receptor-like kinase ALK2 was found to be significantly higher in grade III compared to grade I chondrosarcoma. Nuclear phosphorylated Smad1/5/8 and Smad2 were found in all tumors analyzed and the activity of both signaling pathways was confirmed by functional reporter assays in 2 chondrosarcoma cell lines. Immunohistochemical analysis furthermore revealed that phosphorylated Smad1/5/8 and endoglin expression were significantly higher in high-grade compared to low-grade chondrosarcoma and correlated to each other. Conclusions The BMP and TGFβ signaling pathways were found to be active in central chondrosarcoma cells. The correlation of Smad1/5/8 activity to endoglin expression suggests that, as described in other cell types, endoglin could enhance Smad1/5/8 signaling in high-grade chondrosarcoma cells. Endoglin expression coupled to Smad1/5/8 activation could thus represent a functionally important signaling axis for the progression of chondrosarcoma and a regulator of the undifferentiated phenotype of high-grade tumor cells.

  2. BMP and TGFbeta pathways in human central chondrosarcoma: enhanced endoglin and Smad 1 signaling in high grade tumors

    International Nuclear Information System (INIS)

    As major regulators of normal chondrogenesis, the bone morphogenic protein (BMP) and transforming growth factor β (TGFB) signaling pathways may be involved in the development and progression of central chondrosarcoma. In order to uncover their possible implication, the aim of this study was to perform a systematic quantitative study of the expression of BMPs, TGFBs and their receptors and to assess activity of the corresponding pathways in central chondrosarcoma. Gene expression analysis was performed by quantitative RT-PCR in 26 central chondrosarcoma and 6 healthy articular cartilage samples. Expression of endoglin and nuclear localization of phosphorylated Smad1/5/8 and Smad2 was assessed by immunohistochemical analysis. The expression of TGFB3 and of the activin receptor-like kinase ALK2 was found to be significantly higher in grade III compared to grade I chondrosarcoma. Nuclear phosphorylated Smad1/5/8 and Smad2 were found in all tumors analyzed and the activity of both signaling pathways was confirmed by functional reporter assays in 2 chondrosarcoma cell lines. Immunohistochemical analysis furthermore revealed that phosphorylated Smad1/5/8 and endoglin expression were significantly higher in high-grade compared to low-grade chondrosarcoma and correlated to each other. The BMP and TGFβ signaling pathways were found to be active in central chondrosarcoma cells. The correlation of Smad1/5/8 activity to endoglin expression suggests that, as described in other cell types, endoglin could enhance Smad1/5/8 signaling in high-grade chondrosarcoma cells. Endoglin expression coupled to Smad1/5/8 activation could thus represent a functionally important signaling axis for the progression of chondrosarcoma and a regulator of the undifferentiated phenotype of high-grade tumor cells

  3. Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum

    Directory of Open Access Journals (Sweden)

    Valenzuela Jacob

    2012-06-01

    Full Text Available Abstract Background Phaeodactylum tricornutum is a unicellular diatom in the class Bacillariophyceae. The full genome has been sequenced (P. tricornutum gene expression profiles during nutrient-deprivation and lipid-accumulation, cell cultures were grown with a nitrate to phosphate ratio of 20:1 (N:P and whole-genome transcripts were monitored over time via RNA-sequence determination. Results The specific Nile Red (NR fluorescence (NR fluorescence per cell increased over time; however, the increase in NR fluorescence was initiated before external nitrate was completely exhausted. Exogenous phosphate was depleted before nitrate, and these results indicated that the depletion of exogenous phosphate might be an early trigger for lipid accumulation that is magnified upon nitrate depletion. As expected, many of the genes associated with nitrate and phosphate utilization were up-expressed. The diatom-specific cyclins cyc7 and cyc10 were down-expressed during the nutrient-deplete state, and cyclin B1 was up-expressed during lipid-accumulation after growth cessation. While many of the genes associated with the C3 pathway for photosynthetic carbon reduction were not significantly altered, genes involved in a putative C4 pathway for photosynthetic carbon assimilation were up-expressed as the cells depleted nitrate, phosphate, and exogenous dissolved inorganic carbon (DIC levels. P. tricornutum has multiple, putative carbonic anhydrases, but only two were significantly up-expressed (2-fold and 4-fold at the last time point when exogenous DIC levels had increased after the cessation of growth. Alternative pathways that could utilize HCO3- were also suggested by the gene expression profiles (e.g., putative propionyl-CoA and methylmalonyl-CoA decarboxylases. Conclusions The results indicate that P. tricornutum continued carbon dioxide reduction when population growth was arrested and different carbon-concentrating mechanisms were used dependent upon exogenous

  4. Carbon and hydrogen isotopic composition and generation pathway of biogenic gas in China

    Institute of Scientific and Technical Information of China (English)

    SHEN Ping; WANG Xiaofeng; XU Yin; SHI Baoguang; XU Yongchang

    2009-01-01

    The carbon and hydrogen isotopic composition of biogenic gas is of great importance for the study of its generation pathway and reservoiring characteristics. In this paper, the formation pathways and reservoiring characteristics of biogenic gas reservoirs in China are described in terms of the carbon and hydrogen isotopic compositions of 31 gas samples from 10 biogenic gas reservoirs. The study shows that the hydrogen isotopic compositions of these biogenic gas reservoirs can be divided into three intervals:δDCH4>-200‰,-250‰<δDCH4<-200‰ and δDCH4<-250‰. The forerunners believed that the main generation pathway of biogenic gas under the condition of continental fresh water is acetic fermentation. Our research results showed that the generation pathway of biogenic gas under the condition of marine facies is typical CO2- reduction, the biogenic gas has heavy hydrogen isotopic composition: its δDCH4 values are higher than -200‰; that the biogenic gas under the condition of continental facies also was generated by the same way, but its hydrogen isotopic composition is lighter than that of biogenetic gas generated under typical marine facies condition: -250‰<δDCH4<-200‰, the δDCH4 values may be related to the salinity of the water medium in ancient lakes. From the relevant data of the Qaidam Basin, it can be seen that the hydrogen isotopic composition of biogenic methane has the same variation trend with increasing salinity of water medium. There are biogenic gas reservoirs formed in transitional regions under the condition of continental facies. These gas reservoirs resulted from both CO2- reduction and acetic fermentation, the formation of which may be related to the non-variant salinity of ancient water medium and the relatively high geothermal gradient, as is the case encountered in the Baoshan Basin. The biogenic gas generating in these regions has light hydrogen isotopic composition: δDCH4<-250‰, and relatively heavy carbon isotopic

  5. Scenario analysis of China's emissions pathways in the 21st century for low carbon transition

    International Nuclear Information System (INIS)

    China's growing demand for energy - and its dependence on coal - has seen its carbon emissions increase more than 50% since 2000. Within the debate about mitigating global climate change, there is mounting pressure for emerging economies like China to take more responsibility for reducing their carbon emissions within a post-2012 international climate change policy framework. For China, this leads to fundamental questions about how feasible it is for the country to shift away from its recent carbon intensive pattern of growth. This paper presents some general results of scenarios that have been developed to investigate how China might continue to develop within a cumulative carbon emissions budget. The results show how changes in the key sectors of the Chinese economy could enable China to follow four different low carbon development pathways, each of which complies with a cumulative emissions constraint. Each scenario reflects different priorities for governmental decision making, infrastructure investments and social preferences. Having compared the key features of each scenario, the paper concludes with some implications for Chinese government policy.

  6. Scenario analysis of China's emissions pathways in the 21st century for low carbon transition

    International Nuclear Information System (INIS)

    China's growing demand for energy - and its dependence on coal - has seen its carbon emissions increase more than 50% since 2000. Within the debate about mitigating global climate change, there is mounting pressure for emerging economies like China to take more responsibility for reducing their carbon emissions within a post-2012 international climate change policy framework. For China, this leads to fundamental questions about how feasible it is for the country to shift away from its recent carbon intensive pattern of growth. This paper presents some general results of scenarios that have been developed to investigate how China might continue to develop within a cumulative carbon emissions budget. The results show how changes in the key sectors of the Chinese economy could enable China to follow four different low carbon development pathways, each of which complies with a cumulative emissions constraint. Each scenario reflects different priorities for governmental decision making, infrastructure investments and social preferences. Having compared the key features of each scenario, the paper concludes with some implications for Chinese government policy. (author)

  7. Secondary brown carbon formation via the dicarbonyl imine pathway: nitrogen heterocycle formation and synergistic effects.

    Science.gov (United States)

    Kampf, C J; Filippi, A; Zuth, C; Hoffmann, T; Opatz, T

    2016-07-21

    Dicarbonyls are known to be important precursors of so-called atmospheric brown carbon, significantly affecting aerosol optical properties and radiative forcing. In this systematic study we report the formation of light-absorbing nitrogen containing compounds from simple 1,2-, 1,3-, 1,4-, and 1,5-dicarbonyl + amine reactions. A combination of spectrophotometric and mass spectrometric techniques was used to characterize reaction products in solutions mimicking atmospheric particulates. Experiments with individual dicarbonyls and dicarbonyl mixtures in ammonium sulfate and glycine solutions demonstrate that nitrogen heterocycles are common structural motifs of brown carbon chromophores formed in such reaction systems. 1,4- and 1,5-dicarbonyl reaction systems, which were used as surrogates for terpene ozonolysis products, showed rapid formation of light-absorbing material and products with absorbance maxima at ∼450 nm. Synergistic effects on absorbance properties were observed in mixed (di-)carbonyl experiments, as indicated by the formation of a strong absorber in ammonium sulfate solutions containing acetaldehyde and acetylacetone. This cross-reaction oligomer shows an absorbance maximum at 385 nm, relevant for the actinic flux region of the atmosphere. This study demonstrates the complexity of secondary brown carbon formation via the imine pathway and highlights that cross-reactions with synergistic effects have to be considered an important pathway for atmospheric BrC formation. PMID:27334793

  8. Carbon Stock Potential of Oak and Pine Forests in Garhwal Region in Indian Central Himalayas

    OpenAIRE

    Nanda Nautiyal; Vir Singh

    2013-01-01

    Oak (Quercus leucotichophora) and pine (Pinus roxburghii) are the two most dominant forest types occurring in Indian Central Himalayas. CO2 mitigation potential of these two forest types was observed in the present study. Carbon stock densities for AGTB, BB, LHG, DWS, AGSB and SOC were estimated and higher values were recorded in oak forest stands. Total carbon density estimated was 2420.54 Mg/ha for oak forest of Gopeshwar and 986.93 Mg/ha for pine forest of Nandprayag. CO2 mitigation potent...

  9. Sc3CH@C80: selective (13)C enrichment of the central carbon atom.

    Science.gov (United States)

    Junghans, Katrin; Rosenkranz, Marco; Popov, Alexey A

    2016-05-01

    Sc3CH@C80 is synthesized and characterized by (1)H, (13)C, and (45)Sc NMR. A large negative chemical shift of the proton, -11.73 ppm in the Ih and -8.79 ppm in the D5h C80 cage isomers, is found. (13)C satellites in the (1)H NMR spectrum enabled indirect determination of the (13)C chemical shift for the central carbon at 173 ± 1 ppm. Intensity of the satellites allowed determination of the (13)C content for the central carbon atom. This unique possibility is applied to analyze the cluster/cage (13)C distribution in mechanistic studies employing either (13)CH4 or (13)C powder to enrich Sc3CH@C80 with (13)C. PMID:27109443

  10. Evaluating reaction pathways of hydrothermal abiotic organic synthesis at elevated temperatures and pressures using carbon isotopes

    Science.gov (United States)

    Fu, Qi; Socki, Richard A.; Niles, Paul B.

    2015-04-01

    Experiments were performed to better understand the role of environmental factors on reaction pathways and corresponding carbon isotope fractionations during abiotic hydrothermal synthesis of organic compounds using piston cylinder apparatus at 750 °C and 5.5 kbars. Chemical compositions of experimental products and corresponding carbon isotopic values were obtained by a Pyrolysis-GC-MS-IRMS system. Alkanes (methane and ethane), straight-chain saturated alcohols (ethanol and n-butanol) and monocarboxylic acids (formic and acetic acids) were generated with ethanol being the only organic compound with higher δ13C than CO2. CO was not detected in experimental products owing to the favorable water-gas shift reaction under high water pressure conditions. The pattern of δ13C values of CO2, carboxylic acids and alkanes are consistent with their equilibrium isotope relationships: CO2 > carboxylic acids > alkanes, but the magnitude of the fractionation among them is higher than predicted isotope equilibrium values. In particular, the isotopic fractionation between CO2 and CH4 remained constant at ∼31‰, indicating a kinetic effect during CO2 reduction processes. No "isotope reversal" of δ13C values for alkanes or carboxylic acids was observed, which indicates a different reaction pathway than what is typically observed during Fischer-Tropsch synthesis under gas phase conditions. Under constraints imposed in experiments, the anomalous 13C isotope enrichment in ethanol suggests that hydroxymethylene is the organic intermediate, and that the generation of other organic compounds enriched in 12C were facilitated by subsequent Rayleigh fractionation of hydroxymethylene reacting with H2 and/or H2O. Carbon isotope fractionation data obtained in this study are instrumental in assessing the controlling factors on abiotic formation of organic compounds in hydrothermal systems. Knowledge on how environmental conditions affect reaction pathways of abiotic synthesis of organic

  11. Competing Ecosystem Services: an Assessment of Carbon and Timber in the Tropical Forests of Central America

    OpenAIRE

    Khatun, Kaysara

    2010-01-01

    The Millennium Ecosystem Assessment (MEA 2005) has classified a number of ecosystems good and services (EGS) provided by tropical forests, namely cultural, provisioning, regulatory and support services. The primary focus of this paper is to carry out an economic assessment by comparing the financial costs and returns of selected EGS, namely carbon and timber in the tropical forests of Central America. Timber is unlike the other EGS provided by forests in that it competes with the other servic...

  12. Avoiding, transforming, transitioning: pathways to sustainable low carbon passenger transport in developing countries

    DEFF Research Database (Denmark)

    Meza, Maria Josefina Figueroa; Fulton, Lewis; Tiwari, Geetam;

    2013-01-01

    emerges where non-OECD passenger travel increases of up to 200% can be accommodated via strong investments in transit and non-motorized modes and a recasting of informal transport services into self-organized systems, with lower levels of car ownership and avoidance of carbon emissions. Reductions in......This review examines conditions affecting road passenger transport in developing countries that can be instrumental to building a pathway for reducing carbon emissions while concurrently meeting sustainable development goals. By contrasting present and future status of these conditions a vision...... motorized travel are also necessary from OECD countries; the focus there is given to what level of pricing and regulatory interventions could change behavior. The articulation of detailed visions can help clarify and prioritize areas where policy efforts can have great impact. Strong actions are necessary...

  13. Carbon Cycling Studies in Forest and Rangeland Ecosystems of Northern and Central Coastal California

    Science.gov (United States)

    Potter, C.; Klooster, S.; Gross, P.; Hiatt, S.; Genovese, V.

    2008-12-01

    The varied topography and micro-climates of northern and central coastal California result in high biodiversity and many different levels of primary production driving regional carbon cycles. Coastal mountains trap moisture from low clouds and fog in summer to supplement rainfall in winter. This creates a favorable micro-environment for coniferous forests, including the southernmost habitat of the coast redwood (Sequoia sempervirens), which grows mainly on lower north-facing slopes in Big Sur. In rain shadows, forests transition to open oak woodland, and then into the more fire-tolerant chaparral and coast scrub. Field sites for our on-going climate change studies on the California northern and central coasts currently include the University of California Santa Cruz Campus Natural Reserve, the US Forest Service Brazil Ranch, and the University of California Big Creek Reserve. We are conducting research at each of these sites to better understand possible impacts of climate change, including: (1) biological and physical capacity of soils to capture carbon and retain plant-essential nutrients; (2) rates of plant-soil water and carbon cycling and energy flow; and (3) recovery mechanisms for disturbances such as invasive weed species, grazing, and wildfire. The NASA-CASA simulation model based on satellite observations of monthly vegetation cover from the Moderate Resolution Imaging Spectroradiometer (MODIS) was used to estimate carbon cycling for much of the central coast as far north as Mendocino County. Net primary production (NPP) of all vegetation cover was mapped at 30-meter resolution for selected years by combining MODIS and Landsat images across the region. Results show annual NPP predictions of between 200-400 grams C per square meter for coastal scrub and 800-1200 grams C per square meter for coastal evergreen forests, Net ecosystem fluxes of carbon will be presented for the region based on NASA-CASA modeling and field measurements of soil respiration fluxes.

  14. An Ancient Pathway Combining Carbon Dioxide Fixation with the Generation and Utilization of a Sodium Ion Gradient for ATP Synthesis

    Science.gov (United States)

    Poehlein, Anja; Schmidt, Silke; Kaster, Anne-Kristin; Goenrich, Meike; Vollmers, John; Thürmer, Andrea; Bertsch, Johannes; Schuchmann, Kai; Voigt, Birgit; Hecker, Michael; Daniel, Rolf; Thauer, Rudolf K.; Gottschalk, Gerhard; Müller, Volker

    2012-01-01

    Synthesis of acetate from carbon dioxide and molecular hydrogen is considered to be the first carbon assimilation pathway on earth. It combines carbon dioxide fixation into acetyl-CoA with the production of ATP via an energized cell membrane. How the pathway is coupled with the net synthesis of ATP has been an enigma. The anaerobic, acetogenic bacterium Acetobacterium woodii uses an ancient version of this pathway without cytochromes and quinones. It generates a sodium ion potential across the cell membrane by the sodium-motive ferredoxin:NAD oxidoreductase (Rnf). The genome sequence of A. woodii solves the enigma: it uncovers Rnf as the only ion-motive enzyme coupled to the pathway and unravels a metabolism designed to produce reduced ferredoxin and overcome energetic barriers by virtue of electron-bifurcating, soluble enzymes. PMID:22479398

  15. Brain potentials evoked by intraepidermal electrical stimuli reflect the central sensitization of nociceptive pathways

    OpenAIRE

    Liang, M.; Lee, M. C.; O'Neill, J.; Dickenson, A.H.; Iannetti, G.D.

    2016-01-01

    Central sensitization (CS), the increased sensitivity of the central nervous system to somatosensory inputs, accounts for secondary hyperalgesia, a typical sign of several painful clinical conditions. Brain potentials elicited by mechanical punctate stimulation using flat-tip probes can provide neural correlates of CS, but their signal-to-noise ratio is limited by poor synchronisation of the afferent nociceptive input. Additionally, mechanical punctate stimulation does not activate nociceptor...

  16. Comparative study on CO2 sources in soil developed on carbonate rock and non-carbonate rock in Central Guizhou

    Institute of Scientific and Technical Information of China (English)

    黎廷宇; 王世杰; 郑乐平

    2002-01-01

    In this paper, by using concentration and carbon stable isotope the.CO2 sources of soil profiles developed on limestone, dolostone and claystone basements in Central Guizhou, China are comparatively studied. The results show that CO2 concentration of soil profiles developed on different basements is different, having the following sequence: limestone>dolostone>claystone. Below the soil depth of 20 cm from the surface the δ13C value of CO2 in soil profile developed on limestone ranges from -12.811‰ - -13.492‰(PDB), that in soil profile developed on dolostone varys from -13.212‰--14.271‰(PDB) and that in soil profile developed on claystone is about -20.234‰- -21.485‰(PDB). Taking the carbon isotope of soil organic matter and carbonate rock as two isotopic endmembers, the proportion of soil C02 generated by dissolution of carbonate rock is calculated, about 21%-25% for soil profile developed on limestone basement, 19%-21% for soil profile developed on dolostone basement. There is almost no influx of

  17. Unusual carbonate-rich dikes and lamprophyres in Porcupine Dome, east-central Montana

    Energy Technology Data Exchange (ETDEWEB)

    Doden, A.G.; Gold, D.P. (Pennsylvania State Univ., University Park, PA (United States). Dept. of Geosciences)

    1992-01-01

    Isolated carbonate dikes and lamprophyric plugs are exposed in Porcupine dome, a Laramide structure in east-central Montana. En echelon sets of carbonate dikes strike N70E, consistent with regional lineaments and local normal faults. Individual dikes are steeply dipping, only 30--70 cm in width, and up to 1 km in length. These dikes exhibit unequivocal magmatic characteristics, including chilled margins, flow-aligned micas, multiple intrusive stages, country rock xenoliths, and local small blows'' containing well-rounded carbonate autoliths. Spatially associated with the dikes are small plugs of olivine-phlogopite-garnet-carbonate-bearing silicate rocks and a diatreme of bedded tuffs with xenoliths of country rocks. The dikes consistent primarily of calcite and dolomite, phlogopite, and opaque oxides. Although the dikes are relatively homogeneous mineralogically along strike, some chemical variations are apparent in the vicinity of the plugs/diatreme. Phlogopites and carbonates, common to both dikes and plugs, may provide a genetic link between these spatially associated intrusions. These unusual associations of dikes, plugs and diatremes are not restricted to Porcupine dome, but extend at least as far as the Grassrange - Winnett area, 100 km to the NW. The regional distribution of these small carbonatite bodies suggests a different magmatic process from typical carbonatites and alkaline complexes. The closest analogy is the carbonate dikes in the Premier Diamond Mine, South Africa.

  18. Human cerebral venous outflow pathway depends on posture and central venous pressure

    DEFF Research Database (Denmark)

    Gisolf, J; van Lieshout, J J; van Heusden, K; Pott, F; Stok, W J; Karemaker, J M

    Internal jugular veins are the major cerebral venous outflow pathway in supine humans. In upright humans the positioning of these veins above heart level causes them to collapse. An alternative cerebral outflow pathway is the vertebral venous plexus. We set out to determine the effect of posture...... subjects, before and during a Valsalva manoeuvre in both body positions, correlate highly with model simulation of the jugular cross-sectional area (R(2) = 0.97). The results suggest that the cerebral venous flow distribution depends on posture and CVP: in supine humans the internal jugular veins are the...

  19. Carbon dioxide emissions embodied in international trade in Central Europe between 1995 and 2008

    Directory of Open Access Journals (Sweden)

    Vlčková Jana

    2015-12-01

    Full Text Available Climate change and environmental policies are widely discussed, but much less is known about emissions embodied in goods traded internationally, and the distinction between emission producers and consumers. The carbon dioxide emissions embodied in international trade in Central European countries are subject to examination in this paper. As a result of industrial restructuring and environmental legislation, air pollution has improved significantly in Central European countries since the 1989 transition. On the other hand, economic growth has been accompanied by a rise in consumerism. Despite the increasing role of exports, the Visegrad group countries have become net importers of carbon dioxide emissions between 1995 and 2008. This seems to be the ‘standard trajectory’ of a country’s transition toward a more developed and consumption-oriented economy. The global patterns of carbon dioxide emissions embodied in manufacturing exports are also mapped, using network analysis and constructing ‘product space’. The analysis confirms that industrial re-structuring played an important role in lowering the production of carbon dioxide emissions in the Visegrad countries.

  20. Conversion of 4-Hydroxybutyrate to Acetyl Coenzyme A and Its Anapleurosis in the Metallosphaera sedula 3-Hydroxypropionate/4-Hydroxybutyrate Carbon Fixation Pathway

    Energy Technology Data Exchange (ETDEWEB)

    Hawkins, AB; Adams, MWW; Kelly, RM

    2014-03-25

    The extremely thermoacidophilic archaeon Metallosphaera sedula (optimum growth temperature, 73 degrees C, pH 2.0) grows chemolithoautotrophically on metal sulfides or molecular hydrogen by employing the 3-hydroxypropionate/4-hydroxybutyrate (3HP/4HB) carbon fixation cycle. This cycle adds two CO2 molecules to acetyl coenzyme A (acetyl-CoA) to generate 4HB, which is then rearranged and cleaved to form two acetyl-CoA molecules. Previous metabolic flux analysis showed that two-thirds of central carbon precursor molecules are derived from succinyl-CoA, which is oxidized to malate and oxaloacetate. The remaining one-third is apparently derived from acetyl-CoA. As such, the steps beyond succinyl-CoA are essential for completing the carbon fixation cycle and for anapleurosis of acetyl-CoA. Here, the final four enzymes of the 3HP/4HB cycle, 4-hydroxybutyrate-CoA ligase (AMP forming) (Msed_0406), 4-hydroxybutyryl-CoA dehydratase (Msed_1321), crotonyl-CoA hydratase/(S)-3-hydroxybutyryl-CoA dehydrogenase (Msed_0399), and acetoacetyl-CoA beta-ketothiolase (Msed_0656), were produced recombinantly in Escherichia coli, combined in vitro, and shown to convert 4HB to acetyl-CoA. Metabolic pathways connecting CO2 fixation and central metabolism were examined using a gas-intensive bioreactor system in which M. sedula was grown under autotrophic (CO2-limited) and heterotrophic conditions. Transcriptomic analysis revealed the importance of the 3HP/4HB pathway in supplying acetyl-CoA to anabolic pathways generating intermediates in M. sedula metabolism. The results indicated that flux between the succinate and acetyl-CoA branches in the 3HP/4HB pathway is governed by 4-hydroxybutyrate-CoA ligase, possibly regulated posttranslationally by the protein acetyltransferase (Pat)/Sir2-dependent system. Taken together, this work confirms the final four steps of the 3HP/4HB pathway, thereby providing the framework for examining connections between CO2 fixation and central metabolism in M. sedula.

  1. Centralized modularity of N-linked glycosylation pathways in mammalian cells.

    Directory of Open Access Journals (Sweden)

    Pan-Jun Kim

    Full Text Available Glycosylation is a highly complex process to produce a diverse repertoire of cellular glycans that are attached to proteins and lipids. Glycans are involved in fundamental biological processes, including protein folding and clearance, cell proliferation and apoptosis, development, immune responses, and pathogenesis. One of the major types of glycans, N-linked glycans, is formed by sequential attachments of monosaccharides to proteins by a limited number of enzymes. Many of these enzymes can accept multiple N-linked glycans as substrates, thereby generating a large number of glycan intermediates and their intermingled pathways. Motivated by the quantitative methods developed in complex network research, we investigated the large-scale organization of such N-linked glycosylation pathways in mammalian cells. The N-linked glycosylation pathways are extremely modular, and are composed of cohesive topological modules that directly branch from a common upstream pathway of glycan synthesis. This unique structural property allows the glycan production between modules to be controlled by the upstream region. Although the enzymes act on multiple glycan substrates, indicating cross-talk between modules, the impact of the cross-talk on the module-specific enhancement of glycan synthesis may be confined within a moderate range by transcription-level control. The findings of the present study provide experimentally-testable predictions for glycosylation processes, and may be applicable to therapeutic glycoprotein engineering.

  2. Kenya's Climate Change Action Plan. Low Carbon Climate Resilient Development Pathway

    Energy Technology Data Exchange (ETDEWEB)

    Murphy, D.; Sawyer, D.; Stiebert, S.; McFatridge, S. [International Institute for Sustainable Development IISD, Winnipeg, Manitoba (Canada); Wuertenberger, L.; Van Tilburg, X.; Hekkenberg, M. [Energy research Centre of the Netherlands ECN, Policy Studies, Amsterdam (Netherlands); Owino, T.; Battye, W. [ClimateCare, Nairobi (Kenya); Mutia, T. [Regional Institute for Social Enterprise Kenya RISE, Nairobi (Kenya); Olum, P. [Climate Change Consultant (Kenya)

    2012-12-15

    Kenya Vision 2030 - the long-term development blueprint for the country - aims to transform Kenya into 'a newly industrialising, middle-income country providing a high quality of life to all its citizens in a clean and secure environment'. A low carbon climate resilient development pathway, as set out in this Climate Change Action Plan, can help meet Vision 2030 goals through actions that address both sustainable development and climate change. This pathway can also help the Government achieve the Millennium Development Goals and other internationally agreed development goals without compromising the environment and its natural resources. As Kenya realizes its development aspirations, there will be gains and risks. A growing population and economy with migration to cities will mean increases in greenhouse gas (GHG) emissions. Resulting environmental and social conditions, including increased competition over resources, could intensify vulnerability to climate risks. Transitioning to a low carbon climate resilient development pathway can address future risks thereby improving Kenya's ability to prosper under a changing climate while reducing the emissions intensity of a growing economy. Moving forward on the 2010 National Climate Change Response Strategy will help Kenya transition to a low carbon climate resilient development pathway that puts people and livelihoods at the forefront. The strategy recognized the importance of climate change and development, and this Climate Change Action Plan is the logical next step. A yearlong multistakeholder participatory process involving the public sector, private sector and civil society resulted in this Action Plan that identifies priority climate change actions for Kenya for the short, medium and long term. The Government of Kenya takes climate change and its impact on development seriously. Climate change is considered a crosscutting issue that will be mainstreamed in the planning process both at the national

  3. How does land use link terrestrial and aquatic carbon in western North America?: Implications from an agricultural case study in central Montana

    Science.gov (United States)

    Ewing, S. A.; Sigler, W. A.

    2014-12-01

    The fate of soil organic matter with expanding human land use is of increasing concern for planetary health and ecological sustainability. In North American grasslands, cultivation has commonly resulted in loss of stored soil organic carbon to dissolved phases in groundwater and surface water, as well as to atmospheric CO2 via decomposition. In addition, cultivation has released nutrients stored in organic matter and facilitated water movement through soils to benefit crops, increasing groundwater recharge rates. This has altered groundwater chemistry both by changing biogeochemistry of the terrestrial-aquatic interface and by increasing addition of nutrients, herbicides, and pesticides to these systems. In this presentation, we consider the effects of food production practices on terrestrial-aquatic carbon linkages in former grassland ecosystems of western North America. Our data from an agricultural area in central Montana begin to reveal how elevated nitrate and pesticide levels in groundwater on an isolated landform reflect transformation over the last century of a temperate grassland ecosystem for wheat and cattle production. Rates and pathways of carbon and nitrogen loss are inferred from the concentration and isotopic character of both water and carbon and nitrogen over three years in soils, shallow groundwater, emergent springs and surface waters. In this semi-arid, non-irrigated context, the fate of soil organic matter is linked with redistribution of pedogenic carbonate as well as other soil and rock derived solutes. We consider implications for future trends in dissolved carbon and nitrogen in surface waters in the region.

  4. Evidence and future scenarios of a low-carbon energy transition in Central America: a case study in Nicaragua

    Science.gov (United States)

    Barido, Diego Ponce de Leon; Johnston, Josiah; Moncada, Maria V.; Callaway, Duncan; Kammen, Daniel M.

    2015-10-01

    The global carbon emissions budget over the next decades depends critically on the choices made by fast-growing emerging economies. Few studies exist, however, that develop country-specific energy system integration insights that can inform emerging economies in this decision-making process. High spatial- and temporal-resolution power system planning is central to evaluating decarbonization scenarios, but obtaining the required data and models can be cost prohibitive, especially for researchers in low, lower-middle income economies. Here, we use Nicaragua as a case study to highlight the importance of high-resolution open access data and modeling platforms to evaluate fuel-switching strategies and their resulting cost of power under realistic technology, policy, and cost scenarios (2014-2030). Our results suggest that Nicaragua could cost-effectively achieve a low-carbon grid (≥80%, based on non-large hydro renewable energy generation) by 2030 while also pursuing multiple development objectives. Regional cooperation (balancing) enables the highest wind and solar generation (18% and 3% by 2030, respectively), at the least cost (US127 MWh-1). Potentially risky resources (geothermal and hydropower) raise system costs but do not significantly hinder decarbonization. Oil price sensitivity scenarios suggest renewable energy to be a more cost-effective long-term investment than fuel oil, even under the assumption of prevailing cheap oil prices. Nicaragua’s options illustrate the opportunities and challenges of power system decarbonization for emerging economies, and the key role that open access data and modeling platforms can play in helping develop low-carbon transition pathways.

  5. Snow Impurities on Central Asian Glaciers: Mineral Dust, Organic & Elemental Carbon

    Science.gov (United States)

    Schmale, J.; Kang, S.; Peltier, R.; Sprenger, M.; Guo, J.; Li, Y.; Zhang, Q.

    2014-12-01

    In Central Asia, 90 % of the population depend on water stored in glaciers and mountain snow cover. Accelerated melting can be induced by the deposition of e.g., mineral dust and black carbon that reduce the surface albedo. Data on source regions and chemical characteristics of snow impurities are however scarce in Central Asia. We studied aerosol deposited between summers of 2012 and 2013on three different glaciers in the Kyrgyz Republic. Samples were taken from two snow pits on the glacier Abramov in the northern Pamir and from one snow pit on Ak-Shiirak and Suek in the central Tien Shan. The snow was analyzed for elemental and total organic carbon, major ions and mineral dust. In addition, dissolved organic carbon was speciated by using the Aerodyne high-resolution time-of-flight aerosol spectrometer. Elevated mineral dust concentrations were found on all glaciers during summer and winter with lower annual average concentrations (20 mg l-1)in the northern Pamir (factor 5 to 6). Correlations between dust tracers varied, indicating different source regions. Average EC concentrations showed seasonal variation in the northern Pamir (> 100 μg l-1 in summer, 12) than in summer (glaciers ranged between 0.65 and 1.09, indicating a high degree of oxygenation which suggests long-range transport of the organic snow impurities. Marker substances such as potassium and mercury and their correlations suggest contribution from biomass burning emissions. Atmospheric measurements in August 2013 were conducted to obtain information on background aerosol characteristics in the remote high mountain areas. The average black carbon concentration was 0.26 μg/m³ (± 0.24 μg/m³).

  6. MPTP’s Pathway of Toxicity Indicates Central Role of Transcription Factor SP1

    OpenAIRE

    Maertens, Alexandra; Luechtefeld, Thomas; KLEENSANG Andre; Hartung, Thomas

    2015-01-01

    Deriving a Pathway of Toxicity from transcriptomic data remains a challenging task. We explore the use of weighted gene correlation network analysis (WGCNA) to extract an initial network from a small microarray study of MPTP toxicity in mice. Five modules were statistically significant; each module was analyzed for gene signatures in the Chemical and Genetic Perturbation subset of the Molecular Signatures Database as well as for over-represented transcription factor binding sites and WGCNA cl...

  7. New Pathways and Metrics for Enhanced, Reversible Hydrogen Storage in Boron-Doped Carbon Nanospaces

    Energy Technology Data Exchange (ETDEWEB)

    Pfeifer, Peter [University of Missouri; Wexler, Carlos [University of Missouri; Hawthorne, M. Frederick [University of Missouri; Lee, Mark W. [University of Missouri; Jalistegi, Satish S. [University of Missouri

    2014-08-14

    This project, since its start in 2007—entitled “Networks of boron-doped carbon nanopores for low-pressure reversible hydrogen storage” (2007-10) and “New pathways and metrics for enhanced, reversible hydrogen storage in boron-doped carbon nanospaces” (2010-13)—is in support of the DOE's National Hydrogen Storage Project, as part of the DOE Hydrogen and Fuel Cells Program’s comprehensive efforts to enable the widespread commercialization of hydrogen and fuel cell technologies in diverse sectors of the economy. Hydrogen storage is widely recognized as a critical enabling technology for the successful commercialization and market acceptance of hydrogen powered vehicles. Storing sufficient hydrogen on board a wide range of vehicle platforms, at energy densities comparable to gasoline, without compromising passenger or cargo space, remains an outstanding technical challenge. Of the main three thrust areas in 2007—metal hydrides, chemical hydrogen storage, and sorption-based hydrogen storage—sorption-based storage, i.e., storage of molecular hydrogen by adsorption on high-surface-area materials (carbons, metal-organic frameworks, and other porous organic networks), has emerged as the most promising path toward achieving the 2017 DOE storage targets of 0.055 kg H2/kg system (“5.5 wt%”) and 0.040 kg H2/liter system. The objective of the project is to develop high-surface-area carbon materials that are boron-doped by incorporation of boron into the carbon lattice at the outset, i.e., during the synthesis of the material. The rationale for boron-doping is the prediction that boron atoms in carbon will raise the binding energy of hydro- gen from 4-5 kJ/mol on the undoped surface to 10-14 kJ/mol on a doped surface, and accordingly the hydro- gen storage capacity of the material. The mechanism for the increase in binding energy is electron donation from H2 to electron-deficient B atoms, in the form of sp2 boron-carbon bonds. Our team is proud to have

  8. Central efferent pathways mediating skin cooling-evoked sympathetic thermogenesis in brown adipose tissue

    OpenAIRE

    Nakamura, Kazuhiro; Morrison, Shaun F.

    2006-01-01

    Control of thermoregulatory effectors by the autonomic nervous system is a critical component of rapid cold-defense responses, which are triggered by thermal information from the skin. However, the central autonomic mechanism driving thermoregulatory effector responses to skin thermal signals remains to be determined. Here, we examined the involvement of several autonomic brain regions in sympathetic thermogenic responses in brown adipose tissue (BAT) to skin cooling in urethane-chloralose-an...

  9. 13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

    Directory of Open Access Journals (Sweden)

    Saloheimo Markku

    2009-10-01

    Full Text Available Abstract Background The filamentous fungus Trichoderma reesei is an important host organism for industrial enzyme production. It is adapted to nutrient poor environments where it is capable of producing large amounts of hydrolytic enzymes. In its natural environment T. reesei is expected to benefit from high energy yield from utilization of respirative metabolic pathway. However, T. reesei lacks metabolic pathway reconstructions and the utilization of the respirative pathway has not been investigated on the level of in vivo fluxes. Results The biosynthetic pathways of amino acids in T. reesei supported by genome-level evidence were reconstructed with computational carbon path analysis. The pathway reconstructions were a prerequisite for analysis of in vivo fluxes. The distribution of in vivo fluxes in both wild type strain and cre1, a key regulator of carbon catabolite repression, deletion strain were quantitatively studied by performing 13C-labeling on both repressive carbon source glucose and non-repressive carbon source sorbitol. In addition, the 13C-labeling on sorbitol was performed both in the presence and absence of sophorose that induces the expression of cellulase genes. Carbon path analyses and the 13C-labeling patterns of proteinogenic amino acids indicated high similarity between biosynthetic pathways of amino acids in T. reesei and yeast Saccharomyces cerevisiae. In contrast to S. cerevisiae, however, mitochondrial rather than cytosolic biosynthesis of Asp was observed under all studied conditions. The relative anaplerotic flux to the TCA cycle was low and thus characteristic to respiratory metabolism in both strains and independent of the carbon source. Only minor differences were observed in the flux distributions of the wild type and cre1 deletion strain. Furthermore, the induction of the hydrolytic gene expression did not show altered flux distributions and did not affect the relative amino acid requirements or relative anabolic

  10. A direct evidence for high carbon dioxide and radon-222 discharge in Central Nepal

    Energy Technology Data Exchange (ETDEWEB)

    Perrier, F.; Byrdina, S. [Inst Phys Globe, UMR 7154, Equipe Geomagnetisme, F-75005 Paris (France); Univ Paris Diderot, F-75005 Paris (France); Richon, P.; Bollinger, L.; Bureau, S. [CEA Bruyeres le Chatel, DIF, Dept Anal Surveillance Environm, 91 (France); Richon, P. [Inst Phys Globe, UMR 7154, Equipe Geol Syst Volcan, F-75005 Paris (France); France-Lanord, Ch. [CNRS, Ctr Rech Petrog and Geochim, F-54501 Vandoeuvre Les Nancy (France); Rajaure, S.; Koirala, Bharat Prasad; Shrestha, Prithvi Lal; Gautam, Umesh Prasad; Tiwari, Dilli Ram; Sapkota, Soma Nath [Natl Seism Ctr, Dept Mines and Geol, Kathmandu (Nepal); Revil, A. [Colorado Sch Mines, Dept Geophys, Golden, CO 80401 (United States); Revil, A. [Univ Savoie, Equipe Volcans, CNRS, LGIT, UMR 5559, Chambery (France); Contraires, S. [Inst Phys Globe, Equipe Geomat and Environm, F-75005 Paris (France)

    2009-02-15

    Gas discharges have been identified at the Syabru-Bensi hot springs, located at the front of the High Himalaya in Central Nepal, in the Main Central Thrust zone. The hot spring waters are characterized by a temperature reaching 61 C, high salinity, high alkalinity and {delta}{sup 13}C varying from +0. 7 parts per thousand to +4. 8 parts per thousand. The gas is mainly dry carbon dioxide, with a {delta}{sup 13}C of -0. 8 parts per thousand. The diffuse carbon dioxide flux, mapped by the accumulation chamber method, reached a value of 19000 g m{sup -2}day{sup -1}, which is comparable with values measured on active volcanoes. Similar values have been observed over a two-year time interval and the integral around the main gas discharge amounts to 0. 25 {+-} 0. 07 mol s{sup -1}, or 350 {+-} 100 ton a{sup -1}. The mean radon-222 concentration in spring water did not exceed 2. 5 Bq L{sup -1}, exponentially decreasing with water temperature. In contrast, in gas bubbles collected in the water or in the dry gas discharges, the radon concentration varied from 16 000 to 41000 Bq m{sup -3}. In the soil, radon concentration varied from 25000 to more than 50000 Bq m{sup -3}. Radon flux, measured at more than fifty points, reached extreme values, larger than 2 Bq m{sup -2}s{sup -1}, correlated to the larger values of the carbon dioxide flux. Our direct observation confirms previous studies which indicated large degassing in the Himalaya. The proposed understanding is that carbon dioxide is released at mid-crustal depth by metamorphic reactions within the Indian basement, transported along pre-existing faults by meteoric hot water circulation, and degassed before reaching surface. This work, first, confirms that further studies should be undertaken to better constrain the carbon budget of the Himalaya, and, more generally, the contribution of mountain building to the global carbon balance. Furthermore, the evidenced gas discharges provide a unique natural laboratory for

  11. Linking carbon storage with functional diversity in tropical rainforest in the central Congo Basin

    Science.gov (United States)

    Verbeeck, Hans; Kearsley, Elizabeth; Bauters, Marijn; Beeckman, Hans; Huygens, Dries; Steppe, Kathy; Boeckx, Pascal

    2015-04-01

    This presentation will show an overview of results of the COBIMFO project (Congo basin integrated monitoring for forest carbon mitigation and biodiversity). In the framework of this project we have established 21 permanent 1 ha sampling plots in different forest types in the Yangambi reserve. This UNESCO Man and Biosphere reserve has an area of more than 6000 km² and is located in the heart of the Congo Basin near the Yangambi research station (DR Congo). Analysis of the inventory data of these plots revealed that carbon stocks in mature forests in this area of the Congo Basin are significantly lower (24%) than stocks recorded in the outer regions of the basin. These lower stocks are attributed to a lower maximal tree height (Kearsley et al. 2013). In addition to the carbon inventories we collected leaf and wood samples on all species within 95% basal area of each of the Yangambi plots. A total of 995 individuals were sampled, covering 123 tree species. On the samples we measured 15 traits related to leaf and wood morphology and functioning. In the presented study, relationships between the observed functional diversity and biomass are analysed. One of the remarkable results of our analysis is that species with a high functional distinctiveness have a low contribution to the basal area and the carbon stocks. In contrast, species with a high contribution to the carbon stock have a low contribution to the functional diversity. Similar patterns have been observed elsewhere (e.g. Amazon basin), but are now for the first time confirmed for central African rainforest. Finally, we also present the first results of an analysis of carbons stocks and functional diversity in tropical plantations from a unique 70-years old tree diversity experiment that was established during the colonial period at the Yangambi research station. Kearsley, E., de Haulleville, T., Hufkens, K., Kidimbu, A., Toirambe, B., Baert, G., Huygens, D., Kebede, Y., Defourny, P., Bogaert, J., Beeckman, H

  12. A direct evidence for high carbon dioxide and radon-222 discharge in Central Nepal

    International Nuclear Information System (INIS)

    Gas discharges have been identified at the Syabru-Bensi hot springs, located at the front of the High Himalaya in Central Nepal, in the Main Central Thrust zone. The hot spring waters are characterized by a temperature reaching 61 C, high salinity, high alkalinity and δ13C varying from +0. 7 parts per thousand to +4. 8 parts per thousand. The gas is mainly dry carbon dioxide, with a δ13C of -0. 8 parts per thousand. The diffuse carbon dioxide flux, mapped by the accumulation chamber method, reached a value of 19000 g m-2day-1, which is comparable with values measured on active volcanoes. Similar values have been observed over a two-year time interval and the integral around the main gas discharge amounts to 0. 25 ± 0. 07 mol s-1, or 350 ± 100 ton a-1. The mean radon-222 concentration in spring water did not exceed 2. 5 Bq L-1, exponentially decreasing with water temperature. In contrast, in gas bubbles collected in the water or in the dry gas discharges, the radon concentration varied from 16 000 to 41000 Bq m-3. In the soil, radon concentration varied from 25000 to more than 50000 Bq m-3. Radon flux, measured at more than fifty points, reached extreme values, larger than 2 Bq m-2s-1, correlated to the larger values of the carbon dioxide flux. Our direct observation confirms previous studies which indicated large degassing in the Himalaya. The proposed understanding is that carbon dioxide is released at mid-crustal depth by metamorphic reactions within the Indian basement, transported along pre-existing faults by meteoric hot water circulation, and degassed before reaching surface. This work, first, confirms that further studies should be undertaken to better constrain the carbon budget of the Himalaya, and, more generally, the contribution of mountain building to the global carbon balance. Furthermore, the evidenced gas discharges provide a unique natural laboratory for methodological studies, and appear particularly important to study as a function of time

  13. Lysine Malonylome May Affect the Central Metabolism and Erythromycin Biosynthesis Pathway in Saccharopolyspora erythraea.

    Science.gov (United States)

    Xu, Jun-Yu; Xu, Zhen; Zhou, Ying; Ye, Bang-Ce

    2016-05-01

    Lysine acylation is a dynamic, reversible post-translational modification that can regulate cellular and organismal metabolism in bacteria. Acetylome has been studied well in bacteria. However, to our knowledge, there are no proteomic data on the lysine malonylation in prokaryotes, especially in actinomycetes, which are the major producers of therapeutic antibiotics. In our study, the first malonylome of the erythromycin-producing Saccharopolyspora erythraea was described by using a high-resolution mass spectrometry-based proteomics approach and high-affinity antimalonyllysine antibodies. We identified 192 malonylated sites on 132 substrates. Malonylated proteins are enriched in many biological processes such as protein synthesis, glycolysis and gluconeogenesis, the TCA cycle, and the feeder metabolic pathways of erythromycin synthesis according to GO analysis and KEGG pathway analysis. A total of 238 S/T/Y/H-phosphorylated sites on 158 proteins were also identified in our study, which aimed to explore the potential cross-talk between acylation and phosphorylation. After that, site-specific mutations showed that malonylation is a negative regulatory modification on the enzymatic activity of the acetyl-CoA synthetase (Acs) and glutamine synthetase (Gs). Furthermore, we compared the malonylation levels of the two-growth state to explore the potential effect of malonylation on the erythromycin biosynthesis. These findings expand our current knowledge of the actinomycetes malonylome and supplement the acylproteome databases of the whole bacteria. PMID:27090497

  14. Carbon Stock Potential of Oak and Pine Forests in Garhwal Region in Indian Central Himalayas

    Directory of Open Access Journals (Sweden)

    Nanda Nautiyal

    2013-05-01

    Full Text Available Oak (Quercus leucotichophora and pine (Pinus roxburghii are the two most dominant forest types occurring in Indian Central Himalayas. CO2 mitigation potential of these two forest types was observed in the present study. Carbon stock densities for AGTB, BB, LHG, DWS, AGSB and SOC were estimated and higher values were recorded in oak forest stands. Total carbon density estimated was 2420.54 Mg/ha for oak forest of Gopeshwar and 986.93 Mg/ha for pine forest of Nandprayag. CO2 mitigation potential of oak forest of Gopeshwar was recorded to be 8,713.94 CO2e and of pine forests 3552.95 CO2e.

  15. Mapping organic carbon stocks in eucalyptus plantations of the central highlands of Madagascar : a multiple regression approach

    OpenAIRE

    Razakamanarivo, R. H.; Grinand, Clovis; Razafindrakoto, M. A.; Bernoux, Martial; Albrecht, Alain

    2011-01-01

    Recent concerns about global warming have resulted in more concerted studies on quantification and modeling of carbon (C) storage in different ecosystems. The aim of this study was to assess and map the carbon stocks in above (ABG), below-ground (BLG) biomass and soil organic carbon contained in the 30 centimeter top-layer (SOC) in coppices of eucalyptus plantations in the central highlands of Madagascar in an area of 1590 ha. Relationships between C stock and various biophysical (stool or sh...

  16. Photosynthetic carbon fixation pathways in Zostera marina and three Florida seagrasses

    Energy Technology Data Exchange (ETDEWEB)

    Beer, S.; Wetzel, R.G.

    1982-06-01

    The photosynthetic carbon fixation pathways of four seagrass species, Zostera marina L. from Alaska and Thalassia testudinum Banks ex Konig, Syringodium filiforme Kutz. and Halodule wrightii Aschers. from the Gulf of Mexico, were investigated with a /sup 14/C pulse-chase technique. All species were found to be principally of the C/sub 3/ type. However, Thalassia and Halodule had higher initial incorporation rates into organic acids than is typical for terrestrial C/sub 3/ plants. Of 11 seagrass species investigated thus far for C/sub 3/ or C/sub 4/ metabolism using this technique, 10 were found to be principally of the C/sub 3/ type while only one exhibited C/sub 4/ metabolism.

  17. Detection of potential leakage pathways from geological carbon storage by fluid pressure data assimilation

    Science.gov (United States)

    González-Nicolás, Ana; Baù, Domenico; Alzraiee, Ayman

    2015-12-01

    One of the main concerns of geological carbon storage (GCS) systems is the risk of leakage through "weak" permeable areas of the sealing formation or caprock. Since the fluid pressure pulse travels faster than the carbon dioxide (CO2) plume across the storage reservoir, the fluid overpressure transmitted into overlying permeable formations through caprock discontinuities is potentially detectable sooner than actual CO2 leakage occurs. In this work, an inverse modeling method based on fluid pressure measurements collected in strata above the target CO2 storage formation is proposed, which aims at identifying the presence, the location, and the extent of possible leakage pathways through the caprock. We combine a three-dimensional subsurface multiphase flow model with ensemble-based data assimilation algorithms to recognize potential caprock discontinuities that could undermine the long-term safety of GCS. The goal of this work is to examine and compare the capabilities of data assimilation algorithms such as the ensemble smoother (ES) and the restart ensemble Kalman filter (REnKF) to detect the presence of brine and/or CO2 leakage pathways, potentially in real-time during GCS operations. For the purpose of this study, changes in fluid pressure in the brine aquifer overlying to CO2 storage formation aquifer are hypothetically observed in monitoring boreholes, or provided by time-lapse seismic surveys. Caprock discontinuities are typically characterized locally by higher values of permeability, so that the permeability distribution tends to fit to a non-Gaussian bimodal process, which hardly complies with the requirements of the ES and REnKF algorithms. Here, issues related to the non-Gaussianity of the caprock permeability field are investigated by developing and applying a normal score transform procedure. Results suggest that the REnKF is more effective than the ES in characterizing caprock discontinuities.

  18. Wnt signaling pathway improves central inhibitory synaptic transmission in a mouse model of Duchenne muscular dystrophy.

    Science.gov (United States)

    Fuenzalida, Marco; Espinoza, Claudia; Pérez, Miguel Ángel; Tapia-Rojas, Cheril; Cuitino, Loreto; Brandan, Enrique; Inestrosa, Nibaldo C

    2016-02-01

    The dystrophin-associated glycoprotein complex (DGC) that connects the cytoskeleton, plasma membrane and the extracellular matrix has been related to the maintenance and stabilization of channels and synaptic receptors, which are both essential for synaptogenesis and synaptic transmission. The dystrophin-deficient (mdx) mouse model of Duchenne muscular dystrophy (DMD) exhibits a significant reduction in hippocampal GABA efficacy, which may underlie the altered synaptic function and abnormal hippocampal long-term plasticity exhibited by mdx mice. Emerging studies have implicated Wnt signaling in the modulation of synaptic efficacy, neuronal plasticity and cognitive function. We report here that the activation of the non-canonical Wnt-5a pathway and Andrographolide, improves hippocampal mdx GABAergic efficacy by increasing the number of inhibitory synapses and GABA(A) receptors or GABA release. These results indicate that Wnt signaling modulates GABA synaptic efficacy and could be a promising novel target for DMD cognitive therapy. PMID:26626079

  19. Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity.

    Directory of Open Access Journals (Sweden)

    Nengyi Zhang

    Full Text Available BACKGROUND: Central carbon metabolism (CCM is a fundamental component of life. The participating genes and enzymes are thought to be structurally and functionally conserved across and within species. Association mapping utilizes a rich history of mutation and recombination to achieve high resolution mapping. Therefore, applying association mapping in maize (Zea mays ssp. mays, the most diverse model crop species, to study the genetics of CCM is a particularly attractive system. METHODOLOGY/PRINCIPAL FINDINGS: We used a maize diversity panel to test the CCM functional conservation. We found heritable variation in enzyme activity for every enzyme tested. One of these enzymes was the NAD-dependent isocitrate dehydrogenase (IDH, E.C. 1.1.1.41, in which we identified a novel amino-acid substitution in a phylogenetically conserved site. Using candidate gene association mapping, we identified that this non-synonymous polymorphism was associated with IDH activity variation. The proposed mechanism for the IDH activity variation includes additional components regulating protein level. With the comparison of sequences from maize and teosinte (Zea mays ssp. Parviglumis, the maize wild ancestor, we found that some CCM genes had also been targeted for selection during maize domestication. CONCLUSIONS/SIGNIFICANCE: Our results demonstrate the efficacy of association mapping for dissecting natural variation in primary metabolic pathways. The considerable genetic diversity observed in maize CCM genes underlies heritable phenotypic variation in enzyme activities and can be useful to identify putative functional sites.

  20. Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator. A Case Study in Shewanella oneidensis

    Energy Technology Data Exchange (ETDEWEB)

    Leyn, Semen; Li, Xiaoqing; Zheng, Qijing; Novichkov, Pavel; Reed, Samantha B.; Romine, Margaret F.; Fredrickson, Jim K.; Yang, Chen; Osterman, Andrei L.; Rodionov, Dmitry A.

    2011-08-17

    Bacteria exploit multiple mechanisms for controlling central carbon metabolism (CCM). Thus, a bioinformatic analysis together with some experimental data implicated HexR transcriptional factor as a global CCM regulator in some lineages of Gammaproteobacteria operating as a functional replacement of Cra regulator characteristic of Enterobacteriales. In this study we combined a large-scale comparative genomic reconstruction of HexRcontrolled regulons in 87 species of Proteobacteria with the detailed experimental analysis of HexR regulatory network in Shewanella oneidensis model system. Although nearly all of the HexR-controlled genes are associated with CCM, remarkable variations were revealed in the scale (from 1-2 target operons in Enterobacteriales up to 20 operons in Aeromonadales) and gene content of HexR regulons between 11 compared lineages. A predicted 17-bp pseudo-palindrome with a consensus tTGTAATwwwATTACa, was confirmed as HexR-binding motif for 15 target operons (comprising 30 genes) by in vitro binding assays. The negative effect of the key CCM intermediate, 2-keto-3-deoxy-6- phosphogluconate, on the DNA-regulator complex formation was verified. A dual mode of HexR action on various target promoters, repression of genes involved in catabolic pathways and activation of gluconeogenic genes, was for the first time predicted by the bioinformatc analysis and experimentally verified by changed gene expression pattern in S. oneidensis AhexR mutant. Phenotypic profiling revealed the inability of this mutant to grow on lactate or pyruvate as a single carbon source. A comparative metabolic flux analysis of wild-type and mutant strains of S. oneidensis using 13Clactate labeling and GC-MS analysis confirmed the hypothesized HexR role as a master regulator of gluconeogenic flux from pyruvate via the transcriptional activation of phosphoenolpyruvate synthase (PpsA).

  1. Enzymatic passaging of human embryonic stem cells alters central carbon metabolism and glycan abundance

    Science.gov (United States)

    Badur, Mehmet G.; Zhang, Hui; Metallo, Christian M.

    2016-01-01

    To realize the potential of human embryonic stem cells (hESCs) in regenerative medicine and drug discovery applications, large numbers of cells that accurately recapitulate cell and tissue function must be robustly produced. Previous studies have suggested that genetic instability and epigenetic changes occur as a consequence of enzymatic passaging. However, the potential impacts of such passaging methods on the metabolism of hESCs have not been described. Using stable isotope tracing and mass spectrometry-based metabolomics, we have explored how different passaging reagents impact hESC metabolism. Enzymatic passaging caused significant decreases in glucose utilization throughout central carbon metabolism along with attenuated de novo lipogenesis. In addition, we developed and validated a method for rapidly quantifying glycan abundance and isotopic labeling in hydrolyzed biomass. Enzymatic passaging reagents significantly altered levels of glycans immediately after digestion but surprisingly glucose contribution to glycans was not affected. These results demonstrate that there is an immediate effect on hESC metabolism after enzymatic passaging in both central carbon metabolism and biosynthesis. HESCs subjected to enzymatic passaging are routinely placed in a state requiring re-synthesis of biomass components, subtly influencing their metabolic needs in a manner that may impact cell performance in regenerative medicine applications. PMID:26289220

  2. Development and distribution of PAG-immunoreactive neurons in the central pathway of trigeminal proprioception of the rat brainstem

    Institute of Scientific and Technical Information of China (English)

    PANG You-wang; LI Jin-lian

    2002-01-01

    Objective:To investigate the development and distribution of phosphate-activated glutaminase like immunoreactive (PAG-LI) neurons in the central pathway of trigeminal proprioception of the rat brainstem.Methods: The immunohistochemitry techniques were used. Results: (1) At embryonic day 17 (E17), PAGLI neurons were initially observed in the mesencephalic trigeminal nucleus (Vme). All PAG-LI neurons were large round neurons with moderate immunostaining. The immunoreactivity grew intense and attained adultlike pattern at P10. (2) Not until postnatal day 10 (P10) did a few PAG-LI neurons appear in the area ventral to the motor trigeminal nucleus (AVM) and area dorsal to the superior olivery nucleus (ADO), and not until P12 in the dorsomedial part of the subnucleus oralis of the spinal trigeminal nucleus (Vodm) and dorsomedial part of the principal sensory trigeminal nucleus (Vpdm). As development proceeded, more and more neurons in them were immunostained, and some PAG-LI neurons were detected in the lateral reticular formation adjacent to the Vodm(LRF)and the caudolateral part of the supratrigeminal nucleus (Vsup-CL) at P21.Conclusion: In the central pathway of trigeminal proprioception of the rat brainstem, PAG-LI neurons appeared during two stages: The first stage from E17 to P10, PAG-LI neurons appeared in the Vme and reached adult-like pattern; the second stage from P10 to P21, PAG-LI neurons appeared in the Vodm, LRF,Vpdm, Vsup-CL, ADO, AVM and gradually reached adult-like pattern. This might be relative to the establishment of jaw movement patterns.

  3. Radionuclide migration pathways analysis for the Oak Ridge Central Waste Disposal Facility on the West Chestnut Ridge site

    International Nuclear Information System (INIS)

    A dose-to-man pathways analysis is performed for disposal of low-level radioactive waste at the Central Waste Disposal Facility on the West Chestnut Ridge Site. Both shallow land burial (trench) and aboveground (tumulus) disposal methods are considered. The waste volumes, characteristics, and radionuclide concentrations are those of waste streams anticipated from the Oak Ridge National Laboratory, the Y-12 Plant, and the Oak Ridge Gaseous Diffusion Plant. The site capacity for the waste streams is determined on the basis of the pathways analysis. The exposure pathways examined include (1) migration and transport of leachate from the waste disposal units to the Clinch River (via the groundwater medium for trench disposal and Ish Creek for tumulus disposal) and (2) those potentially associated with inadvertent intrusion following a 100-year period of institutional control: an individual resides on the site, inhales suspended particles of contaminated dust, ingests vegetables grown on the plot, consumes contaminated water from either an on-site well or from a nearby surface stream, and receives direct exposure from the contaminated soil. It is found that either disposal method would provide effective containment and isolation for the anticipated waste inventory. However, the proposed trench disposal method would provide more effective containment than tumuli because of sorption of some radionuclides in the soil. Persons outside the site boundary would receive radiation doses well below regulatory limits if they were to ingest water from the Clinch River. An inadvertent intruder could receive doses that approach regulatory limits; however, the likelihood of such intrusions and subsequent exposures is remote. 33 references, 31 figures, 28 tables

  4. High carbon monoxide concentrations during the rainy season in Campo Grande, in central Brazil

    International Nuclear Information System (INIS)

    This work describes an event of unusually large mixing ratios of carbon monoxide, CO, observed during a typical rainy season time period in central Brazil, when concentrations are expected to be at low levels. CO measurements were performed in Campo Grande (20.02 deg. S; 54.5 deg. W), from July 2001 to October 2002, covering entire periods of the dry and wet seasons. From January to June, average CO was 131 parts per billion by volume (ppbv). During November/December, average CO is about 180 ppbv. On November 13, 521.9 and 565.6 ppbv were observed. It is shown that for this special event, in which there was practically no fire activity at or near the site, air parcels reaching the site were enriched with fire products from regions much further north, near the equatorial region, where the fire activity is delayed in time, compared to central Brazil. - Unusually high levels of CO occurred in Campo Grande, central Brazil in the rainy season

  5. Carbon isotope geothermometry of graphite-bearing marbles from Central Dronning Maud Land, East Antarctica

    International Nuclear Information System (INIS)

    In order to estimate the peak metamorphic temperatures in high-grade regional metamorphic marbles from central Dronning Maud Land (East Antarctica), 13C/12C isotope ratios have been measured for coexisting carbonate and graphite pairs. The δ13C values of carbonates (calcite ± dolomite) and graphite vary from -0.1 to +4.6 permill (PDB) and from -3.3 to +1.7 permill, respectively. The isotopic fractionation between carbonate and graphite ranges from 2.9 to 4.0 permill and is similar to the Δ13C (carb-gr) values observed in other East Antarctic and non-Antarctic granulite-facies marbles. The metamorphic temperatures calculated using the equation of VALLEY and O'NEIL (1981) for calcite-graphite pairs are predominantly in the range 7000 - 8000C (xn=5 ± s = 7300 ± 300C) and agree well with metamorphic temperatures derived from mineral chemical studies in this East Antarctic region. (author)

  6. Carbon balance indicates a time limit for cultivation of organic soils in central Switzerland

    Science.gov (United States)

    Paul, Sonja; Ammann, Christof; Alewell, Christine; Leifeld, Jens

    2016-04-01

    Peatlands serve as important carbon sinks. Globally, more than 30% of the soil organic carbon is stored in organic soils, although they cover only 3% of the land surface. The agricultural use of organic soils usually requires drainage thereby transforming these soils from a net carbon sink into a net source. Currently, about 2 to 3 Gt CO2 are emitted world-wide from degrading organic soils (Joosten 2011; Parish et al. 2008) which is ca. 5% of the total anthropogenic emissions. Besides these CO2 emissions, the resulting subsidence of drained peat soils during agricultural use requires that drainage system are periodically renewed and finally to use pumping systems after progressive subsidence. In Switzerland, the Seeland region is characterised by fens which are intensively used for agriculture since 1900. The organic layer is degrading and subsequently getting shallower and the underlying mineral soil, as lake marl or loam, is approaching the surface. The questions arises for how long and under which land use practises and costs these soils can be cultivated in the near future. The study site was under crop rotation until 2009 when it was converted to extensively used grassland with the water regime still being regulated. The soil is characterised by a degraded organic horizon of 40 to 70 cm. Since December 2014 we are measuring the carbon exchange of this grassland using the Eddy-Covariance method. For 2015, the carbon balance indicates that the degraded fen is a strong carbon source, with approximately 500 g C m‑2 a‑1. The carbon balance is dominated by CO2 emissions and harvest. Methane emissions are negligible. With the gained emission factors different future scenarios are evaluated for the current cultivation practise of organic soils in central Switzerland. Joosten, H., 2011: Neues Geld aus alten Mooren: Über die Erzeugung von Kohlenstoffzertifikaten aus Moorwiedervernässungen. Telma Beiheft 4, 183-202. Parish, F., A. Sirin, D. Charman, H. Joosten, T

  7. Establishment of an experimental ferret ocular hypertension model for the analysis of central visual pathway damage.

    Science.gov (United States)

    Fujishiro, Takashi; Kawasaki, Hiroshi; Aihara, Makoto; Saeki, Tadashiro; Ymagishi, Reiko; Atarashi, Takuya; Mayama, Chihiro; Araie, Makoto

    2014-01-01

    Glaucoma optic neuropathy (GON) is a condition where pathogenic intraocular pressure (IOP) results in axonal damage following retinal ganglion cell (RGC) death, and further results in secondary damage of the lateral geniculate nucleus (LGN). Therapeutic targets for glaucoma thus focus on both the LGN and RGC. However, the temporal and spatial patterns of degeneration and the mechanism of LGN damage have not been fully elucidated. Suitable and convenient ocular hypertension (OH) animal models with binocular vision comparable to that of monkeys are strongly needed. The ferret is relatively small mammal with binocular vision like humans - here we report on its suitability for investigating LGN. We developed a new method to elevate IOP by injection of cultured conjunctival cells into the anterior chamber to obstruct aqueous outflow. Histologically, cultured conjunctival cells successfully proliferated to occlude the angle, and IOP was elevated for 13 weeks after injection. Macroscopically, the size of the eye gradually expanded. Subsequent enlargement of optic nerve head cupping and atrophic damage of LGN projected from the OH eye were clearly observed by anterograde staining with cholera toxin B. We believe the ferret may be a promising OH model to investigate secondary degeneration of central nervous system including LGN. PMID:25308730

  8. Stable and radioactive carbon in forest soils of Chhattisgarh, Central India: Implications for tropical soil carbon dynamics and stable carbon isotope evolution

    Science.gov (United States)

    Laskar, A. H.; Yadava, M. G.; Ramesh, R.

    2016-06-01

    Soils from two sites viz. Kotumsar and Tirathgarh, located ∼5 km apart in a tropical reserve forest (18°52‧N, 81°56‧E) in central India, have been explored for soil organic carbon (SOC) content, its mean residence time (MRT) and the evolution of stable carbon isotopic composition (δ13C). SOC stocks in the upper 30 cm of soil layers are ∼5.3 kg/m2 and ∼3.0 kg/m2; in the upper 110 m are ∼10.7 kg/m2 and ∼7.8 kg/m2 at Kotumsar and Tirathgarh, respectively. SOC decreases with increasing depth. Bomb carbon signature is observed in the upper ∼10 cm. Organic matters in the top soil layers (0-10 cm) have MRTs of the order of a century which increases gradually with depths, reaching 3500-5000 yrs at ∼100 cm. δ13C values of SOC increase with depth, the carbon isotopic fractionation is obtained to be -1.2‰ and -3‰ for soils at Kotumsar and Tirathgarh, respectively, confirmed using Rayleigh isotopic fractionation model. The evolution of δ13C in soils was also studied using a modified Rayleigh fractionation model incorporating a continuous input into the reservoir: the depth profiles of δ13C for SOC show that the input organic matter from surface into the deeper soil layers is either insignificant or highly labile and decomposes quite fast in the top layers, thus making little contribution to the residual biomasses of the deeper layers. This is an attempt to understand the distillation processes that take place in SOC, assess the extent of decomposition by microbes and effect of percolation of fresh organic matter into dipper soil layers which are important for stable isotope based paleoclimate and paleovegetation reconstruction and understanding the dynamics of organic carbon in soils.

  9. North and south: Regional footprints on the transition pathway towards a low carbon, global economy

    International Nuclear Information System (INIS)

    Environmental or 'ecological' footprints are indicators of resource consumption and waste absorption transformed on the basis of biologically productive land area required per capita with prevailing technology. They represent a partial measure of the extent to which the planet, its regions, or nations are moving along a sustainable development pathway. Such footprints vary between countries at different stages of economic development and varying geographic characteristics. A correlation equation for national environmental footprints is used, alongside international projections of population growth and gross regional income, to estimate the relative contributions of the peoples of the industrialised North and populous South that would be needed in order to secure climate-stabilising carbon reductions out to about 2100. The four so-called 'marker scenarios' produced by the Intergovernmental Panel on Climate Change are used to estimate the degree of energy efficiency improvement and carbon mitigation that is feasible. The present footprint projections suggest that a reduction in the consumption of biophysical assets across both the developing and industrialised world is indeed possible. However, the developing world's footprint is shown to overshoot that of the industrialised countries by around 2010-2015. It then levels out and starts to fall, on the most optimistic scenario, by about 2050. In order to achieve global sustainability in the 21st Century a serious commitment to environmental protection is required in both the industrialised North and the 'majority South'. That implies balancing population growth, economic well-being, and environmental impacts in the interests of all the people and wildlife on 'Spaceship Earth'.

  10. [Carbon emissions and low-carbon regulation countermeasures of land use change in the city and town concentrated area of central Liaoning Province, China].

    Science.gov (United States)

    Xi, Feng-ming; Liang, Wen-juan; Niu, Ming-fen; Wang, Jiao-yue

    2016-02-01

    Carbon emissions due to land use change have an important impact on global climate change. Adjustment of regional land use patterns has a great scientific significance to adaptation to a changing climate. Based on carbon emission/absorption parameters suitable for Liaoning Province, this paper estimated the carbon emission of land use change in the city and town concentrated area of central Liaoning Province. The results showed that the carbon emission and absorption were separately 308.51 Tg C and 11.64 Tg C from 1997 to 2010. It meant 3.8% of carbon emission. was offset by carbon absorption. Among the 296.87 Tg C net carbon emission of land use change, carbon emission of remaining land use type was 182.24 Tg C, accounting for 61.4% of the net carbon emission, while the carbon emission of land use transformation was 114.63 Tg C, occupying the rest 38.6% of net carbon emission. Through quantifying the mapping relationship between land use change and carbon emission, it was shown that during 1997-2004 the contributions of remaining construction land (40.9%) and cropland transform ation to construction land (40.6%) to carbon emission were larger, but the greater contributions to carbon absorption came from cropland transformation to forest land (38.6%) and remaining forest land (37.5%). During 2004-2010, the land use types for carbon emission and absorption were the same to the period of 1997-2004, but the contribution of remaining construction land to carbon emission increased to 80.6%, and the contribution of remaining forest land to carbon absorption increased to 71.7%. Based on the carbon emission intensity in different land use types, we put forward the low-carbon regulation countermeasures of land use in two aspects. In carbon emission reduction, we should strict control land transformation to construction land, increase the energy efficiency of construction land, and avoid excessive development of forest land and water. In carbon sink increase, we should

  11. Global zero-carbon energy pathways using viable mixes of nuclear and renewables

    International Nuclear Information System (INIS)

    Highlights: • A proper mix of nuclear power and renewables achieves sustainable energy future. • A high nuclear share provides cost and land effectiveness compared to nuclear-free. • Only-renewable mix will increase negative economic and environmental impacts. • A deployment of advanced reactor technologies is essential to overcome limitations. - Abstract: What are the most viable global pathways for a major expansion of zero-carbon emissions electricity sources given the diversity of regional technical, socio-political and economic constraints? We modelled a range of zero-emissions energy scenarios across nations that were designed to meet projected final energy demand in 2060, and optimised to derive the best globally aggregated results in terms of minimising costs and land use (a surrogate for environmental impacts). We found that a delayed energy transition to a zero-emissions pathway will decrease investment costs (−$3,431 billion), but increase cumulative CO2 emissions (additional 696 Gt). A renewable-only scenario would convert >7.4% of the global land area to energy production, whereas a maximum nuclear scenario would affect <0.4% of land area, including mining, spent-fuel storage, and buffer zones. Moreover, a nuclear-free pathway would involve up to a 50% greater cumulative capital investment compared to a high nuclear penetration scenario ($73.7 trillion). However, for some nations with a high current share of renewables and a low projected future energy demand (e.g., Norway), pursuit of a higher nuclear share is suboptimal. In terms of the time frame for replacement of fossil fuels, achieving a global nuclear share of about 50% by 2060 would be a technically and economically plausible target if progressing at a pace of the average historical growth of nuclear power penetration in France from 1970 to 1986 (0.28 MWh person−1 year-1). For effective climate-change mitigation, a high penetration of nuclear in association with a nationally

  12. Formation mechanism of carbonate cemented zones adjacent to the top overpressured surface in the central Junggar Basin,NW China

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Carbonate cemented zones are normally adjacent to the top overpressured surface in the central Junggar Basin,NW China.Stable carbon and oxygen isotopic compositions and petrological investigations of carbonate cements in the carbonate cemented zones indicate that:(1) carbonate cements are composed dominantly of ferrocalcite,ferroan dolomite,and ankerite;(2) carbonate cements are formed under a high temperature circumstance in the subsurface,and organic fluid migration has an important effect on the formation of them;and(3) carbon and oxygen ions in the carbonate cements migrate from the underlying overpressured system.This suggests that the occurrence of carbonate cemented zones in this region results from multiple phases of organic fluid expulsion out of the overpressure compartment through geological time.This study provides a plausible mechanism of the formation of carbonate cemented zones adjacent to the top overpressured surface in the clastic sedimentary basins,and has an important implication for understanding the internal correlation between the formation of carbonate cemented zones adjacent to top overpressured surface and geofluids expulsion out of overpressured system.

  13. Oxidation state, bioavailability & biochemical pathway define the fate of carbon in soil

    Science.gov (United States)

    Kuzyakov, Yakov; Apostel, Carolin; Gunina, Anna; Herrmann, Anke M.; Dippold, Michaela

    2015-04-01

    Numerous experiments under laboratory and field conditions analyzed microbial utilization and mean residence time (MRT) of carbon (C) from plant and microbial residues as well as root exudates in soil. Most of these studies tested the effects of various environmental factors, such as temperature, soil moisture, texture etc. on these parameters. However, only a few studies compared the properties of the substances themselves and there is no conceptual framework based on biochemical pathways. We hypothesize that the fate of C from organic substances in soil strongly depends on the first step of their microbial utilization, specifically, on biochemical pathway and initial C oxidation state, as well as its bioavailability in soils, defined by its hydrophobicity and molecular weight. Here we introduce and evaluate a new conceptual framework based on the following parameters: 1) C oxidation state, 2) molecular weight and hydrophobicity, 3) initial biochemical pathway of a substance class in microbial cells. To assess these parameters, two databases were prepared based on the literature and own studies. The first database included only the studies with 14C or 13C position specific labeled sugars, amino acids, carboxylic acids, phenols and lipids in soil. This database allowed us to analyze microbial utilization and mineralization of organics to CO2 depending on their C oxidation state (OS) and on functional groups. Additionally, we calculated data on the bond electronegativity of all compounds investigated in these studies. The second data base included the results of 14C and 13C studies with uniformly labeled substances of various classes. This database considered the free enthalpie (Delta H) per C unit from a variety of substrates differing in their aromaticity, hydrophobicity/electronegativity and location of the substance on the van Krevelen diagram. In addition, we calculated the hydrophobicity from the electronegativity of the individual bonds and recorded their

  14. Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos.

    Science.gov (United States)

    Alonso, Ana P; Goffman, Fernando D; Ohlrogge, John B; Shachar-Hill, Yair

    2007-10-01

    The efficiency with which developing sunflower embryos convert substrates into seed storage reserves was determined by labeling embryos with [U-(14)C6]glucose or [U-(14)C5]glutamine and measuring their conversion to CO2, oil, protein and other biomass compounds. The average carbon conversion efficiency was 50%, which contrasts with a value of over 80% previously observed in Brassica napus embryos (Goffman et al., 2005), in which light and the RuBisCO bypass pathway allow more efficient conversion of hexose to oil. Labeling levels after incubating sunflower embryos with [U-(14)C4]malate indicated that some carbon from malate enters the plastidic compartment and contributes to oil synthesis. To test this and to map the underlying pattern of metabolic fluxes, separate experiments were carried out in which embryos were labeled to isotopic steady state using [1-(13)C1]glucose, [2-(13)C1]glucose, or [U-(13)C5]glutamine. The resultant labeling in sugars, starch, fatty acids and amino acids was analyzed by NMR and GC-MS. The fluxes through intermediary metabolism were then quantified by computer-aided modeling. The resulting flux map accounted well for the labeling data, was in good agreement with the observed carbon efficiency, and was further validated by testing for agreement with gas exchange measurements. The map shows that the influx of malate into oil is low and that flux through futile cycles (wasting ATP) is low, which contrasts with the high rates previously determined for growing root tips and heterotrophic cell cultures. PMID:17683473

  15. Influence of geology, regolith and soil on fluid flow pathways in an upland catchment in central NSW, Australia

    Science.gov (United States)

    Bernardi, Tony

    2014-05-01

    Influence of geology, regolith and soil on fluid flow pathways in an upland catchment in central NSW, Australia. Tony Bernardi and Leah Moore Dryland Salinity Hazard Mitigation Program (DSHMP), University of Canberra, ACT 2601, AUSTRALIA The diversity of salt expression in central NSW has defied classification because salt expression, mobilisation and transport is highly variable and is typically site specific. Hydrological models are extensively used to simulate possible outcomes for a range of land use changes to mitigate the mobilisation and transport of salt into the streams or across the land surface. The ability of these models to mimic reality can be variable thereby reducing the confidence in the models outputs and uptake of strategic management changes by the community. This study focuses on a 250 ha semi-arid sub-catchment of Little River catchment in central west NSW in the Murray-Darling Basin, Australia. We propose that an understanding the structure of the landforms and configuration of rock, regolith and soil materials at the study site influences fluid flow pathways in the landscape and can be related to observed variations in the chemical composition and salinity of surface and aquifer water. Preliminary geological mapping of the site identified the dominant rock type as a pink and grey dacite and in localised mid-slope areas, a coarsely crystalline biotite-phyric granodiorite. Samples were taken at regular intervals from natural exposures in eroded stream banks and in excavations made during the installation of neutron moisture meter tubes. In order to establish mineral weathering pathways, samples were taken from the relatively unweathered core to the outer weathered 'onion skins' of corestones on both substrates, and then up through the regolith profile, including the soil zone, to the land surface. X-ray diffraction (XRD) analysis and X-ray fluorescence (XRF) was conducted on the rock and soil/saprock samples. Electromagnetic induction (EMI

  16. Forest Restoration Carbon Analysis of Baseline Carbon Emissions and Removal in Tropical Rainforest at La Selva Central, Peru

    Energy Technology Data Exchange (ETDEWEB)

    Patrick Gonzalez; Benjamin Kroll; Carlos R. Vargas

    2006-01-10

    Conversion of tropical forest to agricultural land and pasture has reduced forest extent and the provision of ecosystem services, including watershed protection, biodiversity conservation, and carbon sequestration. Forest conservation and reforestation can restore those ecosystem services. We have assessed forest species patterns, quantified deforestation and reforestation rates, and projected future baseline carbon emissions and removal in Amazon tropical rainforest at La Selva Central, Peru. The research area is a 4800 km{sup 2} buffer zone around the Parque Nacional Yanachaga-Chemillen, Bosque de Proteccion San Matias-San Carlos, and the Reserva Comunal Yanesha. A planned project for the period 2006-2035 would conserve 4000 ha of forest in a proposed 7000 ha Area de Conservacion Municipale de Chontabamba and establish 5600 ha of natural regeneration and 1400 ha of native species plantations, laid out in fajas de enriquecimiento (contour plantings), to reforest 7000 ha of agricultural land. Forest inventories of seven sites covering 22.6 ha in primary forest and 17 sites covering 16.5 ha in secondary forest measured 17,073 trees of diameter {ge} 10 cm. The 24 sites host trees of 512 species, 267 genera, and 69 families. We could not identify the family of 7% of the trees or the scientific species of 21% of the trees. Species richness is 346 in primary forest and 257 in the secondary forest. In primary forest, 90% of aboveground biomass resides in old-growth species. Conversely, in secondary forest, 66% of aboveground biomass rests in successional species. The density of trees of diameter {ge} 10 cm is 366 trees ha{sup -1} in primary forest and 533 trees ha{sup -1} in secondary forest, although the average diameter is 24 {+-} 15 cm in primary forest and 17 {+-} 8 cm in secondary forest. Using Amazon forest biomass equations and wood densities for 117 species, aboveground biomass is 240 {+-} 30 t ha{sup -1} in the primary sites and 90 {+-} 10 t ha{sup -1} in the

  17. Effects of wildfire on soil organic carbon export by runoff in Central Portugal

    Science.gov (United States)

    Varela, M. E.; Faria, S. R.; Campos, I.; Caria, M. M. P. F.; Ferreira, R. S. V.; Machado, A. I.; Martins, M. A. S.; Pinto, R.; Prats, S. A.; Esteves, V. I.; Keizer, J. J.

    2012-04-01

    Forest fires, a frequent and recurrent phenomenon in Mediterranean ecosystems, have several ecological and environmental impacts caused in part by short- and medium-term effects on soil physical and chemical characteristics as well as on organic matter (OM) composition, properties and dynamics and hence upon microbial populations. This negatively affects soil health and quality, and enhances the occurrence of erosive processes and the loss of a non-renewable natural resource such is the soil. Due to the large C pool present in soils, even small changes in soil OM may have a significant effect on biogeochemical cycles and on global climate. Even though some authors consider that organic C mobilized by erosion processes may be protected from mineralization, the general tendency is to consider that soil erosion exposes OM to mineralization processes and represents the main factor of C losses from the planet's surface. Whilst it is well documented that wildfires can have major impacts on hydrological and erosion processes, the associated transport of organic matter has received considerably less research attention. The FIRECNUTS project (PTDC/AGR-CFL/104559/2008) addresses this research gap by studying, among others, the export of organic carbon in a recently burnt forest area of 250 ha in north-central Portugal (Sever do Vouga). To this end, five slopes with contrasting forest types (eucalypt vs. Maritime Pine plantations) and geologies (schist vs. granite) are being monitored for sediment losses since a wildfire that occurred in July 2010. For reference, also a neighboring, long-unburnt eucalypt plantation is being monitored. The sediments collected by sediment fences were measured and collected at monthly intervals during the first 6 or 12 months after fire. The total carbon content of the sediment samples was measured using a Shimazdu TOC analyzer. Preliminary results revealed marked differences in organic carbon concentrations between the two burnt eucalypt stands

  18. Metabolic Flux Analysis of Shewanella spp. Reveals Evolutionary Robustness in Central Carbon Metabolism

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Yinjie J.; Martin, Hector Garcia; Dehal, Paramvir S.; Deutschbauer, Adam; Llora, Xavier; Meadows, Adam; Arkin, Adam; Keasling, Jay D.

    2009-08-19

    Shewanella spp. are a group of facultative anaerobic bacteria widely distributed in marine and fresh-water environments. In this study, we profiled the central metabolic fluxes of eight recently sequenced Shewanella species grown under the same condition in minimal med-ium with [3-13C] lactate. Although the tested Shewanella species had slightly different growth rates (0.23-0.29 h31) and produced different amounts of acetate and pyruvate during early exponential growth (pseudo-steady state), the relative intracellular metabolic flux distributions were remarkably similar. This result indicates that Shewanella species share similar regulation in regard to central carbon metabolic fluxes under steady growth conditions: the maintenance of metabolic robustness is not only evident in a single species under genetic perturbations (Fischer and Sauer, 2005; Nat Genet 37(6):636-640), but also observed through evolutionary related microbial species. This remarkable conservation of relative flux profiles through phylogenetic differences prompts us to introduce the concept of metabotype as an alternative scheme to classify microbial fluxomics. On the other hand, Shewanella spp. display flexibility in the relative flux profiles when switching their metabolism from consuming lactate to consuming pyruvate and acetate.

  19. Stable carbon and oxygen isotope record of central Lake Erie sediments

    Science.gov (United States)

    Tevesz, M.J.S.; Spongberg, A.L.; Fuller, J.A.

    1998-01-01

    Stable carbon and oxygen isotope data from mollusc aragonite extracted from sediment cores provide new information on the origin and history of sedimentation in the southwestern area of the central basin of Lake Erie. Sediments infilling the Sandusky subbasin consist of three lithologic units overlying glacial deposits. The lowest of these is a soft gray mud overlain by a shell hash layer containing Sphaerium striatinum fragments. A fluid mud unit caps the shell hash layer and extends upwards to the sediment-water interface. New stable isotope data suggest that the soft gray mud unit is of postglacial, rather than proglacial, origin. These data also suggest that the shell hash layer was derived from erosional winnowing of the underlying soft gray mud layer. This winnowing event may have occurred as a result of the Nipissing flood. The Pelee-Lorain moraine, which forms the eastern boundary of the Sandusky subbasin, is an elevated area of till capped by a sand deposit that originated as a beach. The presence of both the shell hash layer and relict beach deposit strengthens the interpretation that the Nipissing flood was a critical event in the development of the southwestern area of the central basin of Lake Erie. This event, which returned drainage from the upper lakes to the Lake Erie basin, was a dominant influence on regional stratigraphy, bathymetry, and depositional setting.

  20. Estimating Carbon Stocks and Atmospheric Exchange of Depressional Marshes on the Central Florida Landscape

    Science.gov (United States)

    Benscoter, B.; McClellan, M. D.; Benavides, V.; Harshbarger, D.; Comas, X.

    2014-12-01

    Depressional marshes are ubiquitous throughout central and south Florida. Often distributed within a matrix of sandy pine flatwoods and hammocks, these wetlands have a seasonally variable water table, alternating between inundation and complete drydown. Though these landforms are typically small individually, they comprise a substantial component of the landscape and provide vital habitat for an array of flora and fauna. Given their fluctuating hydrology, conditions for soil and plant carbon (C) exchange mechanisms can vary greatly both spatially and temporally. In this study, we are developing a C budget for depressional marsh landforms by assessing ecosystem carbon exchange along an ecotone gradient and quantifying belowground C stocks using non-invasive geophysical methods (ground penetrating radar, GPR) at the Disney Wilderness Preserve (DWP) in Kissimmee, FL, USA. Using a series of closed chambers transecting the marsh from the center outward into the surrounding flatwoods, we are quantifying the effects of seasonal water table change on the magnitude of C exchange. Three dimensional GPR surveys were used to quantify peat layer thickness, and were constrained with direct core sampling to verify subsurface lithology and to assess peat C content. Using the relationship between landform surface area and belowground C volume, we assessed the cumulative C storage in depressional marshes across the DWP landscape. In conjunction with a nearby eddy covariance tower and seasonal hydrologic data, these response functions will help to evaluate the contribution of these small but widespread landscape features on regional C cycling.

  1. Microbial contribution to carbon biogeochemistry in the Central Mediterranean Sea: Variability of activities and biomass

    Science.gov (United States)

    La Ferla, Rosabruna; Azzaro, Filippo; Azzaro, Maurizio; Caruso, Gabriella; Decembrini, Franco; Leonardi, Marcella; Maimone, Giovanna; Monticelli, Luis S.; Raffa, Francesco; Santinelli, Chiara; Zaccone, Renata; Ribera d'Alcalà, Maurizio

    2005-08-01

    This paper concerns the current debate as to whether oceans are heterotrophic or autotrophic environments. Microbes are responsible for the assimilation and remineralization of CO 2 in the sea and microbial processes are involved in the Earth climatic change. The variability of microbial biomass and activities were studied in the Mediterranean Sea which represents a suitable basin for mapping the trophic regimes by the study of biogeochemical processes. The surveys were carried out in the epi-, meso- and bathy-pelagic zones of the Central Mediterranean Sea from 1996 to 2002. Bacterial abundance, leucine aminopeptidase (LAP) and β-glucosidase (β-GLU) activities, bacterial carbon production (BCP), community respiration (R) and primary production (PP) were the main parameters investigated. Biomass and activities seasonally varied in epipelagic and, to some extent, in meso- and bathy-pelagic layers too and several trophic ratios were determined, showing different scenarios in the different areas and seasons. In the euphotic layer, bacterial growth efficiency (BGE) widely ranged between 4% and 50% showing a decreasing trend from estuaries towards pelagic areas in alignment with the trophic gradient from the Northern Adriatic to the Ionian Sea. However, BGE did not correlate to PP and temperature. The Central Mediterranean Sea showed different trophic regimes in the examined areas and seasons. In the Northern Adriatic Sea in winter, the trophic balance appeared to move towards autotrophy and a positive C budget resulted. An opposite scenario happened in summer when the trophic balance moved to heterotrophy and a negative C budget occurred. In the Ionian Sea, the overall balance turned always towards remineralization. However, on annual time scale, the Central Mediterranean Sea seems to show a tendency towards a heterotrophic system.

  2. Planktic foraminifer and coccolith contribution to carbonate export fluxes over the central Kerguelen Plateau

    Science.gov (United States)

    Rembauville, M.; Meilland, J.; Ziveri, P.; Schiebel, R.; Blain, S.; Salter, I.

    2016-05-01

    We report the contribution of planktic foraminifers and coccoliths to the particulate inorganic carbon (PIC) export fluxes collected over an annual cycle (October 2011/September 2012) on the central Kerguelen Plateau in the Antarctic Zone (AAZ) south of the Polar Front (PF). The seasonality of PIC flux was decoupled from surface chlorophyll a concentration and particulate organic carbon (POC) fluxes and was characterized by a late summer (February) maximum. This peak was concomitant with the highest satellite-derived sea surface PIC and corresponded to a Emiliania huxleyi coccoliths export event that accounted for 85% of the annual PIC export. The foraminifer contribution to the annual PIC flux was much lower (15%) and dominated by Turborotalita quinqueloba and Neogloboquadrina pachyderma. Foraminifer export fluxes were closely related to the surface chlorophyll a concentration, suggesting food availability as an important factor regulating the foraminifer's biomass. We compared size-normalized test weight (SNW) of the foraminifers with previously published SNW from the Crozet Islands using the same methodology and found no significant difference in SNW between sites for a given species. However, the SNW was significantly species-specific with a threefold increase from T. quinqueloba to Globigerina bulloides. The annual PIC:POC molar ratio of 0.07 was close to the mean ratio for the global ocean and lead to a low carbonate counter pump effect (~5%) compared to a previous study north of the PF (6-32%). We suggest that lowers counter pump effect south of the PF despite similar productivity levels is due to a dominance of coccoliths in the PIC fluxes and a difference in the foraminifers species assemblage with a predominance of polar species with lower SNW.

  3. Pathways of Organic-Carbon Oxidation in 3 Continental-Margin Sediments Rid A-8010-2010

    DEFF Research Database (Denmark)

    CANFIELD, DE; JØRGENSEN, BB; FOSSING, H.;

    1993-01-01

    We have combined several different methodologies to quantify rates of organic carbon mineralization by the various electron acceptors in sediments from the coast of Denmark and Norway. Rates of NH4+ and SIGMACO2 liberation in sediment incubations were used with O2 penetration depths to conclude...... that O2 respiration accounted for only between 3.6-17.4% of the total organic carbon oxidation. Dentrification was limited to a narrow zone just below the depth of O2 penetration, and was not a major carbon oxidation pathway. The processes of Fe reduction, Mn reduction and sulfate reduction dominated...... organic carbon mineralization, but their relative significance varied depending on the sediment. Where high concentrations of Mn-oxide were found (3-4 wt% Mn), only Mn reduction occurred. With lower Mn oxide concentrations more typical of coastal sediments, Fe reduction and sulfate reduction were most...

  4. Soil Carbon Dynamics Along the Pathway From Diverse Microbial Carbon to Humus in a Temperate and Tropical Forest

    Science.gov (United States)

    Throckmorton, H. M.; Bird, J. A.; Firestone, M. K.; Horwath, W. R.

    2008-12-01

    This research investigates the importance of microbial biochemistry to humification pathways in two climatically different forest ecosystems; Blodgett forest (BF), a temperate forest in the Sierra Nevada and Luquillo forest (LF), a tropical forest in Puerto Rico. Non-living 13C enriched temperate and tropical microorganisms from four biochemically contrasting microbial groups (fungi, actinomycetes, bacteria gram (+), and bacteria gram (-)) were separately added to soil at both sites in a reciprocal transplant experiment. Decomposition rates were substantially greater at LF than BF for all microbial inputs. Although there were initial differences in microbial C turnover and recovery within the soil microbial biomass and dissolved organic carbon pools for unique microbial C inputs at both sites, over time treatment differences converge within each site and the quality of input microbial C becomes less important to C remaining and maintained within these soil C pools. Physical soil fractionation revealed important trends which illustrate the role of the soil mineral matrix to protect and stabilize C in soil. Results indicate different C turnover rates associated with the light, aggregate- occluded, and mineral-associated soil fractions at both sites. At BF input C recovered within the light and mineral-associated fractions decreased substantially over time (1 to 13 months), while C occluded within aggregates only slightly decreased. Similarly, LF soils exhibit only a slight decrease in aggregate-occluded C over time (0.5 to 3.5 months), while C recovered within the light fraction decreased substantially; however, unlike BF, LF soils exhibited only a slight decrease in C recovered within the mineral fraction. The distribution of total C among these physical soil pools differs substantially for either site, suggesting differences in the relative importance of the mineral matrix to protect and stabilize C. Preliminary compound-specific isotope analyses employing

  5. Investigating Pathways of Nutrient and Energy Flows Through Aquatic Food Webs Using Stable Isotopes of Carbon and Nitrogen

    International Nuclear Information System (INIS)

    Carbon and nitrogen stable isotopes can provide valuable insights into pathways of nutrient and energy flows in aquatic ecosystems. Carbon stable isotopes are principally used to trace pathways of organic matter transfer through aquatic food webs, particularly with regard to identifying the dominant sources of nutrition for aquatic biota. Stable isotopes of carbon have been widely used to answer one of the most pressing questions in aquatic food web ecology - to what degree do in-stream (autochthonous) and riparian (allochthonous) sources of energy fuel riverine food webs? In conjunction with carbon stable isotopes, nitrogen stable isotopes have been used to determine the trophic position of consumers and to identify the number of trophic levels in aquatic food webs. More recently, stable nitrogen isotopes have been recommended as indicators of anthropogenic disturbances. Specifically, agricultural land uses and/or sewage effluent discharge have been shown to significantly increase δ15N signatures in primary producers and higher order consumers in freshwater, estuarine and marine environments. Together, carbon and nitrogen stable isotopes can be used to examine natural food web functions as well as the degree to which human modifications to catchments and aquatic environments can influence aquatic ecosystem function. (author)

  6. Biosynthetic Pathways of Vibrio succinogenes growing with fumarate as terminal electron acceptor and sole carbon source.

    Science.gov (United States)

    Bronder, M; Mell, H; Stupperich, E; Kröger, A

    1982-05-01

    1. With fumarate as the terminal electron acceptor and either H2 or formate as donor, Vibrio succinogenes could grow anaerobically in a mineral medium using fumarate as the sole carbon source. Both the growth rate and the cell yield were increased when glutamate was also present in the medium. 2. Glutamate was incorporated only into the amino acids of the glutamate family (glutamate, glutamine, proline and arginine) of the protein. The residual cell constituents were synthesized from fumarate. 3. Pyruvate and phosphoenolpyruvate, as the central intermediates of most of the cell constituents, were formed through the action of malic enzyme and phosphoenolpyruvate synthetase. Fructose-1,6-bisphosphate aldolase was present in the bacterium suggesting that this enzyme is involved in carbohydrate synthesis. 4. In the absence of added glutamate the amino acids of the glutamate family were synthesized from fumarate via citrate. The enzymes involved in glutamate synthesis were present. 5. During growth in the presence of glutamate, net reducing equivalents were needed for cell synthesis. Glutamate and not H2 or formate was used as the source of these reducing equivalents. For this purpose part of the glutamate was oxidized to yield succinate and CO2. 6. The alpha-ketoglutarate dehydrogenase involved in this reaction was found to use ferredoxin as the electron acceptor. The ferredoxin of the bacterium was reoxidized by means of a NADP-ferredoxin oxidoreductase. Enzymes catalyzing the reduction of NAD, NADP or ferredoxin by H2 or formate were not detected in the bacterium. PMID:7103660

  7. Modulation of the Ca(2+) signaling pathway by celangulin I in the central neurons of Spodoptera exigua.

    Science.gov (United States)

    Li, Yuxin; Lian, Xihong; Wan, Yinging; Wang, Duoyi; Chen, Wei; Di, Fengjuan; Wu, Wenjun; Li, Zhengming

    2016-02-01

    Celangulin I is an insecticidal component isolated from Chinese bittersweet Celastrus angulatus. The present study explored the possible effects of celangulin I on the calcium signaling pathway, especially on the L-type Ca(2+) channel and the calcium channels in the endoplasmic reticulum in the central neurons isolated from the third instar larvae of Spodoptera exigua using whole-cell patch-clamp and calcium imaging technique. The results showed that celangulin I could activate the high voltage-gated calcium channel at the concentration of 150μM. The peak currents were increased by 17% of the initial value at the end of the 10-min recording after treated with celangulin I. The rises of intracellular calcium ion concentration ([Ca(2+)]i) in neurons treated by celangulin I showed that the effects of celangulin I were concentration-dependent. Activation of the RyRs by ryanodine decreased the calcium release induced by celangulin I, indicating that celangulin I exerts effect on insect RyRs. Furthermore, we also provided evidence for the first time that celangulin I activates inositol 1,4,5-trisphosphate (IP3) sensitive intracellular calcium release channels in the endoplasmic reticulum third instar larvae neurons of S. exigua. Plausibly, these experimental results can explain the characteristic symptoms of anesthesia and paralysis in celangulin I treated insects. PMID:26821661

  8. Libidibia ferrea Mature Seeds Promote Antinociceptive Effect by Peripheral and Central Pathway: Possible Involvement of Opioid and Cholinergic Receptors

    Directory of Open Access Journals (Sweden)

    Luis Armando Sawada

    2014-01-01

    Full Text Available Libidibia ferrea (LF is a medicinal plant that holds many pharmacological properties. We evaluated the antinociceptive effect in the LF aqueous seed extract and Lipidic Portion of Libidibia ferrea (LPLF, partially elucidating their mechanisms. Histochemical tests and Gas chromatography of the LPLF were performed to characterize its fatty acids. Acetic acid-induced abdominal constriction, formalin-induced pain, and hot-plate test in mice were employed in the study. In all experiments, aqueous extract or LPLF was administered systemically at the doses of 1, 5, and 10 mg/kg. LF aqueous seed extract and LPLF demonstrated a dose-dependent antinociceptive effect in all tests indicating both peripheral anti-inflammatory and central analgesia properties. Also, the use of atropine (5 mg/kg, naloxone (5 mg/kg in the abdominal writhing test was able to reverse the antinociceptive effect of the LPLF, indicating that at least one of LF lipids components is responsible for the dose related antinociceptive action in chemical and thermal models of nociception in mice. Together, the present results suggested that Libidibia ferrea induced antinociceptive activity is possibly related to its ability to inhibit opioid, cholinergic receptors, and cyclooxygenase-2 pathway, since its main component, linoleic acid, has been demonstrated to produce such effect in previous studies.

  9. Libidibia ferrea Mature Seeds Promote Antinociceptive Effect by Peripheral and Central Pathway: Possible Involvement of Opioid and Cholinergic Receptors

    Science.gov (United States)

    Sawada, Luis Armando; Monteiro, Vanessa Sâmia da Conçeição; Rabelo, Guilherme Rodrigues; Dias, Germana Bueno; Da Cunha, Maura; do Nascimento, José Luiz Martins; Bastos, Gilmara de Nazareth Tavares

    2014-01-01

    Libidibia ferrea (LF) is a medicinal plant that holds many pharmacological properties. We evaluated the antinociceptive effect in the LF aqueous seed extract and Lipidic Portion of Libidibia ferrea (LPLF), partially elucidating their mechanisms. Histochemical tests and Gas chromatography of the LPLF were performed to characterize its fatty acids. Acetic acid-induced abdominal constriction, formalin-induced pain, and hot-plate test in mice were employed in the study. In all experiments, aqueous extract or LPLF was administered systemically at the doses of 1, 5, and 10 mg/kg. LF aqueous seed extract and LPLF demonstrated a dose-dependent antinociceptive effect in all tests indicating both peripheral anti-inflammatory and central analgesia properties. Also, the use of atropine (5 mg/kg), naloxone (5 mg/kg) in the abdominal writhing test was able to reverse the antinociceptive effect of the LPLF, indicating that at least one of LF lipids components is responsible for the dose related antinociceptive action in chemical and thermal models of nociception in mice. Together, the present results suggested that Libidibia ferrea induced antinociceptive activity is possibly related to its ability to inhibit opioid, cholinergic receptors, and cyclooxygenase-2 pathway, since its main component, linoleic acid, has been demonstrated to produce such effect in previous studies. PMID:24860820

  10. Seasonal and spatial contrasts of sedimentary organic carbon in floodplain lakes of the central Amazon basin.

    Science.gov (United States)

    Sobrinho, Rodrigo; Kim, Jung-Hyun; Abril, Gwenaël; Zell, Claudia; Moreira-Turcq, Patricia; Mortillaro, Jean-Michel; Meziane, Tarik; Damsté, Jaap; Bernardes, Marcelo

    2014-05-01

    Three-quarters of the area of flooded land in the world are temporary wetlands (Downing, 2009), which play a significant role in the global carbon cycle(Einsele et al., 2001; Cole et al., 2007; Battin et al., 2009; Abril et al., 2013). Previous studies of the Amazonian floodplain lakes (várzeas), one important compartment of wetlands, showed that the sedimentation of organic carbon (OC) in the floodplain lakes is strongly linked to the periodical floods and to the biogeography from upstream to downstream(Victoria et al., 1992; Martinelli et al., 2003). However, the main sources of sedimentary OC remain uncertain. Hence, the study of the sources of OC buried in floodplain lake sediments can enhance our understanding of the carbon balance of the Amazon ecosystems. In this study, we investigated the seasonal and spatial pattern of sedimentary organic matter in five floodplain lakes of the central Amazon basin (Cabaliana, Janauaca, Canaçari, Miratuba, and Curuai) which have different morphologies, hydrodynamics and vegetation coverage. Surface sediments were collected in four hydrological seasons: low water (LW), rising water (RW), high water (HW) and falling water (FW) in 2009 and 2010. We investigated commonly used bulk geochemical tracers such as C:N ratio and stable isotopic composition of organic carbon (δ13COC). These results were compared with lignin-phenol parameters as an indicator of vascular plant detritus (Hedges and Ertel, 1982) and branched glycerol dialkyl glycerol tetraethers (brGDGTs) to trace the soil OC from land to the aquatic settings (Hopmans et al., 2004). Our data showed that during the RW and FW seasons, the concentration of lignin and brGDGTs were higher in comparison to other seasons. Our study also indicated that floodplain lake sediments primarily consisted of a mixture of C3 plant detritus and soil OC. However, a downstream increase in C4 plant-derived OC contribution was observed along the gradient of increasingly open waters, i

  11. Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

    Energy Technology Data Exchange (ETDEWEB)

    Kleiner, Manuel [Max Planck Institute for Marine Microbiology; Wentrop, C. [Max Planck Institute for Marine Microbiology; Lott, C. [Max Planck Institute for Marine Microbiology; Teeling, Hanno [Max Planck Institute for Marine Microbiology; Wetzel, Silke [Max Planck Institute for Marine Microbiology; Young, Jacque C [ORNL; Chang, Y. [Oak Ridge National Laboratory (ORNL); Shah, Manesh B [ORNL; Verberkmoes, Nathan C [ORNL; Zarzycki, Jan [University of Freiburg, Germany; Fuchs, Georg [University of Freiburg, Germany; Markert, Stephanie [Institute of Marine Biotechnology, Germany; Hempel, Kristina [Institute for Microbiology, Germany

    2012-01-01

    Low nutrient and energy availability has led to the evolution of numerous strategies for overcoming these limitations, of which symbiotic associations represent a key mechanism. Particularly striking are the associations between chemosynthetic bacteria and marine animals that thrive in nutrient-poor environments such as the deep-sea because the symbionts allow their hosts to grow on inorganic energy and carbon sources such as sulfide and CO2. Remarkably little is known about the physiological strategies that enable chemosynthetic symbioses to colonize oligotrophic environments. In this study, we used metaproteomics and metabolomics to investigate the intricate network of metabolic interactions in the chemosynthetic association between Olavius algarvensis, a gutless marine worm, and its bacterial symbionts. We propose novel pathways for coping with energy and nutrient limitation, some of which may be widespread in both free-living and symbiotic bacteria. These include (i) a pathway for symbiont assimilation of the host waste products acetate, propionate, succinate and malate, (ii) the potential use of carbon monoxide as an energy source, a substrate previously not known to play a role in marine invertebrate symbioses, (iii) the potential use of hydrogen as an energy source, (iv) the strong expression of high affinity uptake transporters, and (v) novel energy efficient steps in CO2 fixation and sulfate reduction. The high expression of proteins involved in pathways for energy and carbon uptake and conservation in the O. algarvensis symbiosis indicates that the oligotrophic nature of its environment exerted a strong selective pressure in shaping these associations.

  12. Measurement of black carbon at Syowa station, Antarctica: seasonal variation, transport processes and pathways

    Directory of Open Access Journals (Sweden)

    K. Hara

    2008-05-01

    Full Text Available Measurement of black carbon (BC was carried out at Syowa station Antarctica (69° S, 39° E from February 2004 until January 2007. The BC concentration at Syowa ranged from below detection to 176 ng m−3 during the measurements. Higher BC concentrations were observed mostly under strong wind (blizzard conditions due to the approach of a cyclone and blocking event. The BC-rich air masses traveled from the lower troposphere of the Atlantic and Indian Oceans to Syowa (Antarctic coast. During the summer (November–February, the BC concentration showed a diurnal variation together with surface wind speed and increased in the katabatic wind from the Antarctic continent. Considering the low BC source strength in the Antarctic continent, the higher BC concentration in the continental air (katabatic wind might be caused by long range transport of BC via the free troposphere from mid- and low- latitudes. The seasonal variation of BC at Syowa had a maximum in August, while at the other coastal stations (Halley, Neumayer, and Ferraz and the continental station (Amundsen-Scott, the maximum occurred in October. This difference may result from different transport pathways and scavenging of BC by precipitation during the transport from the source regions. During the austral summer, long-range transport of BC via the free troposphere is likely to make an important contribution to the ambient BC concentration. The BC transport flux indicated that BC injection into the Antarctic region strongly depended on the frequency of storm (blizzard conditions. The seasonal variation of BC transport flux increased by 290 mg m−2 month−1 in winter–spring when blizzards frequently occurred, whereas the flux decreased to lower than 50 mg m−2 month−1 in the summer with infrequent blizzards.

  13. Pathways to a low-carbon economy for the UK with the macro-econometric E3MG model

    International Nuclear Information System (INIS)

    This paper examines different carbon pathways for achieving deep CO2 reduction targets for the UK using a macro-econometric hybrid model E3MG, which stands for Energy-Economy-Environment Model at the Global level. The E3MG, with the UK as one of its regions, combines a top-down approach for modeling the global economy and for estimating the aggregate and disaggregate energy demand and a bottom-up approach (Energy Technology subModel, ETM) for simulating the power sector, which then provides feedback to the energy demand equations and the whole economy. The ETM submodel uses a probabilistic approach and historical data for estimating the penetration levels of the different technologies, considering their economic, technical and environmental characteristics. Three pathway scenarios (CFH, CLC and CAM) simulate the CO2 reduction by 40%, 60% and 80% by 2050 compared to 1990 levels respectively and are compared with a reference scenario (REF), with no reduction target. The targets are modeled as the UK contribution to an international mitigation effort, such as achieving the G8 reduction targets, which is a more realistic political framework for the UK to move towards deep reductions rather than moving alone. This paper aims to provide modeling evidence that deep reduction targets can be met through different carbon pathways while also assessing the macroeconomic effects of the pathways on GDP and investment.

  14. A Numerical Study of the Effect of Periodic Nutrient Supply on Pathways of Carbon in a Coastal Upwelling Regime

    Science.gov (United States)

    Carr, Mary-Elena

    1998-01-01

    A size-based ecosystem model was modified to include periodic upwelling events and used to evaluate the effect of episodic nutrient supply on the standing stock, carbon uptake, and carbon flow into mesozooplankton grazing and sinking flux in a coastal upwelling regime. Two ecosystem configurations were compared: a single food chain made up of net phytoplankton and mesozooplankton (one autotroph and one heterotroph, A1H1), and three interconnected food chains plus bacteria (three autotrophs and four heterotrophs, A3H4). The carbon pathways in the A1H1 simulations were under stronger physical control than those of the A3H4 runs, where the small size classes are not affected by frequent upwelling events. In the more complex food web simulations, the microbial pathway determines the total carbon uptake and grazing rates, and regenerated nitrogen accounts for more than half of the total primary production for periods of 20 days or longer between events. By contrast, new production, export of carbon through sinking and mesozooplankton grazing are more important in the A1H1 simulations. In the A3H4 simulations, the turnover time scale of the autotroph biomass increases as the period between upwelling events increases, because of the larger contribution of slow-growing net phytoplankton. The upwelling period was characterized for three upwelling sites from the alongshore wind speed measured by the NASA Scatterometer (NSCAT) and the corresponding model output compared with literature data. This validation exercise for three upwelling sites and a downstream embayment suggests that standing stock, carbon uptake and size fractionation were best supported by the A3H4 simulations, while the simulated sinking fluxes are not distinguishable in the two configurations.

  15. Geomorphic controls on the export of dissolved organic carbon from forested catchments in central Ontario, Canada

    Science.gov (United States)

    Creed, I. F.; Creed, I. F.; Lynch, M. D.; Sanford, S. E.; Beall, F. D.; Jeffries, D. S.

    2001-12-01

    Dissolved organic carbon (DOC) is a complex mixture of hydrophobic and hydrophilic compounds that has significant implications for the quality of surface water. In forests, wetlands have been shown to be a significant source of the natural variation in DOC export to streams; however, ephemeral wetlands (or surface saturated areas, SSAs) have not yet been considered as a potential source. For catchments in the Turkey Lakes Watershed (TLW) in central Ontario, Canada, the natural variation in DOC export was established and a statistical model to predict this natural variation was developed. For 12 catchments in the TLW, the natural variation in DOC export was significant, with annual averages ranging from 13.8 to 23.2 kg Chayr and catchment averages ranging from 11.9 to 31.5 kg Chayr. It was hypothesised that geomorphic controls on the distribution and organisation of SSAs within catchments influence DOC export. Three SSA indices were derived: (1) SSA size; (2) SSA connectivity to streams (reflecting the hydrologic efficiency of DOC transport); and (3) SSA curvature (reflecting the potential for hydrologic flushing into areas of replenished DOC sources). A multiple linear model indicated that the majority of the natural variation in DOC export was explained by a combination of the hydrologic efficiency and flushing potentials of the SSAs (R-sqr.=0.717, Adjusted R-sqr.4=0.654, pephemeral wetlands must be considered.

  16. Carbon Flux of Down Woody Materials in Forests of the North Central United States

    International Nuclear Information System (INIS)

    Across large scales, the carbon (C) flux of down woody material (DWM) detrital pools has largely been simulated based on forest stand attributes (e.g., stand age and forest type). The annual change in forest DWM C stocks and other attributes (e.g., size and decay class changes) was assessed using a forest inventory in the north central United States to provide an empirical assessment of strategic-scale DWM C flux. Using DWM inventory data from the USDA Forest Service's Forest Inventory and Analysis program, DWM C stocks were found to be relatively static across the study region with an annual flux rate not statistically different from zero. Mean C flux rates across the study area were -0.25, -0.12, -0.01, and -0.04 (Mg/ha/yr) for standing live trees, standing dead trees, coarse woody debris, and fine woody debris, respectively. Flux rates varied in their both magnitude and status (emission/sequestration) by forest types, latitude, and DWM component size. Given the complex dynamics of DWM C flux, early implementation of inventory re measurement, and relatively low sample size, numerous future research directions are suggested.

  17. Climate determined differences in carbon dioxide fluxes dynamics between two comparable agroecosystems of Central Russia

    Science.gov (United States)

    Yaroslavtsev, Alexis; Meshalkina, Joulia; Mazirov, Ilya; Valentini, Riccardo; Vasenev, Ivan

    2015-04-01

    Creation of Russian part of Fluxnet - Rusfluxnet, aims to fill the carbon dioxide fluxes data shortage. Because the Central Russia is still one of the less GHG-investigated European areas especially in case of agroecosystem-level carbon dioxide fluxes monitoring by eddy covariance method. For the first time eddy covariance (EC) GHG study has been conducted at two representative agroecosystems of Central Russia belonging to different climate zones (climate and soils), but both with the same land use: the both fields were under barley. The study was carried out in 2013 and supported by RF Government grant No. 11.G34.31.0079. The first agricultural field located at Precision Farming Experimental Field of the Timiryazev Agricultural University situated in Moscow. It's arable Albeluvisols Umbric have around 1% of SOC, 5.4 pH(KCl) and NPK medium-enhanced contents in sandy loam topsoil. The field was used for barley planting (Hordeum vulgare L., breeding line Mihailovsky). Sowing was in early May 2013 and harvest was in August, 14. The second agricultural field near the Pristen placed at Kursk region of Russia. It's arable Chernozems have around 4% of SOC, 6.5 pH(KCl) and NPK high-enhanced contents in sandy loam topsoil. The field was used for barley planting (Hordeum vulgare L., breeding line Xanadu). Sowing was 25-27 of April and harvest was 14-19 of August. Instrumental equipments (mainly LI-COR) were the same for both stations. Both towers height was 1.4m. Footprints were considered by fields edges, and were about 55m for Moscow and about 150m for Pristen. Canopy growth and snow melting were taking into account in the model. Surface roughness was neglected. Calculations were done using EddyPro software. Since Pristen field is 600 km to the South than the Moscow one, higher PAR values were observed for Pristen field. Modal PAR values were 600 and 400 umol m-2 s-1 for Pristen and Moscow fields respectively. Nevertheless temporal pattern of PAR was similar for both

  18. Stable carbon and nitrogen isotopes and amino acids in Holocene sediments of Lake Lonar, central India

    Science.gov (United States)

    Menzel, Philip; Gaye, Birgit; Wiesner, Martin; Basavaiah, Nathani; Prasad, Sushma; Stebich, Martina; Anoop, Ambili; Riedel, Nils

    2013-04-01

    Investigations on surface sediments and a sediment core from Lake Lonar in central India were carried out within the framework of the HIMPAC (Himalaya: Modern and Past Climate) programme. The aim was to understand recent productivity, sedimentation, and degradation processes and to reconstruct variations in Holocene lake conditions on the basis of biogeochemical analysis on a 10 m long sediment core retrieved from the centre of Lake Lonar. Located in India's core monsoon zone, Lake Lonar offers valuable information about the climate development of the whole region. The lake is situated at the floor of a meteorite impact structure on the Deccan plateau basalt. The modern lake is characterised by brackish water, high alkalinity, severe eutrophication, and bottom water anoxia. The lake is about 6 m deep and fed by rainfall during the SW monsoon season and three perennial streams. Since no out-flowing stream is present and no seepage loss occurs, the lake level is highly sensitive to the balance of precipitation and evaporation. Here we present C/N, carbon and nitrogen isotope, and amino acid data of bulk organic matter from modern lake and Holocene core sediments. Modern conditions are mainly related to human activity which started to have persistent influence on the biological and chemical lake properties at ~1200 cal a BP. The distribution of δ13C in the modern sediments is driven by the ratio between terrestrial and aquatic organic matter, while δ15N seems to be influenced by redox conditions at the sediment-water-interface with elevated values at shallow oxic stations. Differences in the amino acid assemblages of oxic and anoxic surface sediment samples were used to calculate an Ox/Anox ratio indicating the redox conditions during organic matter degradation. The onset of the monsoon reconstructed from the sediment core occurred at ca. 11450 cal a BP. The early Holocene core sediments are characterised by low sedimentation rate, low aquatic productivity, and

  19. Magnetic resonance imaging study of lumbosacral spinal cord nerves before artificial somatic-central nervous system-autonomic reflex pathway establish ment

    International Nuclear Information System (INIS)

    Objective: To investigate the value of MRI as imaging technique for lumbosacral spinal nerves before artificial somatic-central nervous system-autonomic reflex pathway establish ment. Methods: Conventional MRI and T2W CISS 3D were performed in 10 patients with neurogenic bladder planned for the operation of artificial somatic-central nervous system-autonomic reflex pathway. The Three-dimensional data were then constructed into composite images using a standard multiple planar reformation (MPR). Results: Five patients showed tethered spinal cord syndrome, whose spinal cord nerves were circuitous distributed and had abnormity number when penetrated the dura. Of these 5 patients, one patient was accompanied by spinal cord vas malformation. Four patients had vertebral fracture and spinal injury, and the other one patients demonstrated tumor in vertebral canal on MRI examinations. The spinal cord nerves in these 5 patients floated down river and had normal number of spinal cord nerves. Conclusion: Conventional MRI and T2W CISS 3D MRI were essential for the pre-operative planning of artificial somatic-central nervous system-autonomic reflex pathway, especially in patients with tethered spinal cord syndrome. Spinal cord nerves distribute and anterior and posterior roots array can be clearly showed by MPR. (authors)

  20. Interleukin-15 plays a central role in human kidney physiology and cancer through the γc signaling pathway.

    Directory of Open Access Journals (Sweden)

    Julien Giron-Michel

    Full Text Available The ability of Interleukin-15 (IL-15 to activate many immune antitumor mechanisms renders the cytokine a good candidate for the therapy of solid tumors, particularly renal cell carcinoma. Although IL-15 is being currently used in clinical trials, the function of the cytokine on kidney's components has not been extensively studied; we thus investigated the role of IL-15 on normal and tumor renal epithelial cells. Herein, we analyzed the expression and the biological functions of IL-15 in normal renal proximal tubuli (RPTEC and in their neoplastic counterparts, the renal clear cell carcinomas (RCC. This study shows that RPTEC express a functional heterotrimeric IL-15Rαβγc complex whose stimulation with physiologic concentrations of rhIL-15 is sufficient to inhibit epithelial mesenchymal transition (EMT commitment preserving E-cadherin expression. Indeed, IL-15 is not only a survival factor for epithelial cells, but it can also preserve the renal epithelial phenotype through the γc-signaling pathway, demonstrating that the cytokine possess a wide range of action in epithelial homeostasis. In contrast, in RCC in vitro and in vivo studies reveal a defect in the expression of γc-receptor and JAK3 associated kinase, which strongly impacts IL-15 signaling. Indeed, in the absence of the γc/JAK3 couple we demonstrate the assembly of an unprecedented functional high affinity IL-15Rαβ heterodimer, that in response to physiologic concentrations of IL-15, triggers an unbalanced signal causing the down-regulation of the tumor suppressor gene E-cadherin, favoring RCC EMT process. Remarkably, the rescue of IL-15/γc-dependent signaling (STAT5, by co-transfecting γc and JAK3 in RCC, inhibits EMT reversion. In conclusion, these data highlight the central role of IL-15 and γc-receptor signaling in renal homeostasis through the control of E-cadherin expression and preservation of epithelial phenotype both in RPTEC (up-regulation and RCC (down-regulation.

  1. Carbon exchange of an old-growth eastern hemlock (Tsuga canadensis) forest in central New England.

    Science.gov (United States)

    Hadley, Julian L; Schedlbauer, Jessica L

    2002-11-01

    Carbon (C) exchange of an approximately 200-year-old eastern hemlock (Tsuga canadensis L.) forest in central Massachusetts, USA, was estimated from mid-October 2000 through October 2001 based on eddy covariance measurements and statistical modeling from microclimatic data. Measurements were made in 68% of the hours during the year of study, with > 50% coverage in all months except December and August. Data were filtered by wind direction and atmospheric turbulence to remove invalid measurements. Analysis of filtered data showed that photosynthetically active radiation (PAR) was significant in predicting C exchange, except during the winter. Daily minimum air temperature affected C exchange in autumn and winter, whereas time of day, water vapor pressure deficit and air temperature had significant effects on C storage in spring, summer and fall. Most C storage in the stand occurred in April through July and in October 2001, with maximum rates in April and May. Persistent cold weather prevented C storage in December through March. In early spring 2001, C uptake was sensitive to nocturnal frost: daily minimum air temperatures below 0 degrees C reduced C fixation, and minima below -5 degrees C caused its virtual cessation. Soil temperature was a poor predictor of C balance during this period. In August, high soil and air temperatures (averaging 16.7 and 21.1 degrees C, respectively) drove high ecosystem respiration, which approximately balanced C uptake. These patterns show potential for stimulated C storage in hemlock forests in a warmer climate with fewer spring and autumn frosts, but reduced C storage during warmer summers. Estimated annual C storage was 3.0 Mg ha(-1), which is higher than for younger coniferous and deciduous forests during earlier years in the northeastern USA. Long-term data are needed to determine if the estimated high C storage in this hemlock forest is a result of interannual climate variation or an effect of forest composition. PMID:12414368

  2. The putrescine biosynthesis pathway in Lactococcus lactis is transcriptionally regulated by carbon catabolic repression, mediated by CcpA.

    Science.gov (United States)

    Linares, Daniel M; del Río, Beatriz; Ladero, Victor; Redruello, Begoña; Martín, María Cruz; Fernández, María; Alvarez, Miguel A

    2013-07-01

    Lactococcus lactis is the lactic acid bacterium most widely used by the dairy industry as a starter for the manufacture of fermented products such as cheese and buttermilk. However, some strains produce putrescine from agmatine via the agmatine deiminase (AGDI) pathway. The proteins involved in this pathway, including those necessary for agmatine uptake and conversion into putrescine, are encoded by the aguB, aguD, aguA and aguC genes, which together form an operon. This paper reports the mechanism of regulation of putrescine biosynthesis in L. lactis. It is shown that the aguBDAC operon, which contains a cre site at the promoter of aguB (the first gene of the operon), is transcriptionally regulated by carbon catabolic repression (CCR) mediated by the catabolite control protein CcpA. PMID:23688550

  3. On the peritidal cycles and their diagenetic evolution in the Lower Jurassic carbonates of the Calcare Massiccio Formation (Central Apennines)

    OpenAIRE

    Brandano Marco; Corda Laura; Tomassetti Laura; Testa Davide

    2015-01-01

    This paper shows the environmental changes and high-frequency cyclicity recorded by Lower Jurassic shallow-water carbonates known as the Calcare Massiccio Formation which crop out in the central Apennines of Italy. Three types of sedimentary cycle bounded by subaerial erosion have been recognized: Type I consists of a shallowing upward cycle with oncoidal floatstones to rudstones passing gradationally up into peloidal packstone alternating with cryptoalgal laminites and often bounded by desic...

  4. Sources of greenhouse gases and carbon monoxide in central London (UK)

    Science.gov (United States)

    Helfter, Carole; Tremper, Anja; Zazzeri, Giulia; Barlow, Janet F.; Nemitz, Eiko

    2015-04-01

    Biosphere-atmosphere exchange of carbon dioxide (CO2) has been on the scientific agenda for several decades and new technology now also allows for high-precision, continuous monitoring of fluxes of methane (CH4) and nitrous oxide (N2O). Compared to the natural environment, flux measurements in the urban environment, which is home to over 50% of the population globally, are still rare despite high densities of anthropogenic sources of pollutants. We report on over three years of measurements atop a 192 m tower in central London (UK), Europe's largest city, which started in October 2011. Fluxes of methane, carbon monoxide (CO) and carbon dioxide are measured by eddy-covariance (EC) at the British Telecom tower (51° 31' 17.4' N 0° 8' 20.04' W). In addition to the long-term measurements, EC fluxes of nitrous oxide (N2O) were measured in February 2014. All four trace gases exhibit diurnal trends consistent with anthropogenic activities with minimum emissions at night and early afternoon maxima. Segregating emissions by wind direction reveals heterogeneous source distributions with temporal patterns and source strengths that differ between compounds. The lowest emissions for CO, CO2 and CH4 were recorded for NW winds. The highest emissions of methane were in the SE sector, in the NE for CO2 and in the W for CO. Fluxes of all 3 gases exhibited marked seasonal trends characterised by a decrease in emissions in summer (63% reduction for CO, 36% for CO2 and 22% for CH4). Monthly fluxes of CO and CO2 were linearly correlated to air temperature (R2 = 0.7 and 0.59 respectively); a weaker dependence upon temperature was also observed for CH4 (R2 = 0.31). Diurnal and seasonal emissions of CO and CO2 are mainly controlled by local fossil fuel combustion and vehicle cold starts are thought to account for 20-30% of additional emissions of CO during the winter. Fugitive emissions of CH4 from the natural gas distribution network are thought to be substantial, which is consistent

  5. Mimicking a natural pathway for de novo biosynthesis: natural vanillin production from accessible carbon sources

    OpenAIRE

    Jun Ni; Fei Tao; Huaiqing Du; Ping Xu

    2015-01-01

    Plant secondary metabolites have been attracting people’s attention for centuries, due to their potentials; however, their production is still difficult and costly. The rich diversity of microbes and microbial genome sequence data provide unprecedented gene resources that enable to develop efficient artificial pathways in microorganisms. Here, by mimicking a natural pathway of plants using microbial genes, a new metabolic route was developed in E. coli for the synthesis of vanillin, the most ...

  6. The olenekian carbonates of the Bucovinian nappe (the central sector of the Haghimas syncline, Eastern Carpathians. Lithology and microfacies

    Directory of Open Access Journals (Sweden)

    Daniela Popescu

    2005-04-01

    Full Text Available Early Triassic carbonate outcrops were studied in the central sector of the Hăghimaş Syncline with regard to stratigraphy, microfacies and facies interpretation.This is the first microfacies study of these deposits. Early Triassic carbonates in the Hăghimaş Syncline are represented by two stratified successions: limestones and dolomites. The limestones overlie very rarely the detritic basal deposits (Induan which marks the beginning of the alpine transgression. The stratified dolomites underlie frequently the Early Anisian massive dolomites. The contact between the stratified limestones and stratified dolomites is only exposed on Calu brook outcrop (the western flank of the Hăghimaş Syncline. The age of the investigated carbonates is Olenekian, based on the occurrence of Meandrospira pusilla biozone (in limestones. The foraminifera are very scarce in dolomites, represented mostly by Earlandia taxa. Microfacies data indicate the existence of a carbonate platform. The Olenekian carbonates yield a broad spectrum of microfacies types, predominantly micrites and biomicrites with foraminifera associated with echinoderms, ostracods, radiolarians, calcitized gastropods etc. These facies types are also known from the carbonate platforms in other parts of the Tethys.

  7. Multifactor dimensionality reduction analysis to elucidate the cross-talk between one-carbon and xenobiotic metabolic pathways in multi-disease models.

    Science.gov (United States)

    Naushad, Shaik Mohammad; Vijayalakshmi, Sana Venkata; Rupasree, Yedluri; Kumudini, Nadella; Sowganthika, Sampathkumar; Naidu, Janardhanan Venketlakshmi; Ramaiah, M Janaki; Rao, Dunna Nageswara; Kutala, Vijay Kumar

    2015-07-01

    Putatively functional polymorphisms of one-carbon and xenobiotic metabolic pathways influence susceptibility for wide spectrum of diseases. The current study was aimed to explore gene-gene interactions among these two metabolic pathways in four diseases i.e. breast cancer, systemic lupus erythematosus (SLE), coronary artery disease (CAD) and Parkinson's disease (PD). Multifactor dimensionality reduction analysis was carried out on four case-control datasets. Cross-talk was observed between one-carbon and xenobiotic pathways in breast cancer (RFC 80 G>A, COMT H108L and TYMS 5'-UTR 28 bp tandem repeat) and SLE (CYP1A1 m1, MTRR 66 A>G and GSTT1). Gene-gene interactions within one-carbon metabolic pathway were observed in CAD (GCPII 1561 C>T, SHMT 1420 C>T and MTHFR 677 C>T) and PD (cSHMT 1420 C>T, MTRR 66 A>G and RFC1 80 G>A). These interaction models showed good predictability of risk for PD (The area under the receiver operating characteristic curve (C) = 0.83) and SLE (C = 0.73); and moderate predictability of risk for breast cancer (C = 0.64) and CAD (C = 0.63). Cross-talk between one-carbon and xenobiotic pathways was observed in diseases with female preponderance. Gene-gene interactions within one-carbon metabolic pathway were observed in diseases with male preponderance. PMID:25648260

  8. Electrooxidation of glycerol on platinum nanoparticles: Deciphering how the position of each carbon affects the oxidation pathways

    International Nuclear Information System (INIS)

    Highlights: • Glycerol forms CO and CO2 from both terminal (-13CH2OH) and central (-12CHOH-) groups. • The oxidation of the terminal group is easier than that of the central group. • The formation of 13CO2 seems to be favored through a L-H mechanism. • Glyceraldehyde seems to intermediate the formation of glyceric acid. - Abstract: In this work we investigate the electrooxidation of glycerol on platinum nanoparticles in acidic media. By using in situ FTIR and isotopically labeled glycerol (13CH2OH-12CHOH-13CH2OH) we follow the reaction during a full cycle of oxidation and unravel the role of some important species on the electrooxidation pathways. Results indicate that terminal (-13CH2OH) and central (-12CHOH-) groups are able to form adsorbed CO and that both contribute to the production of CO2, although the terminal groups are easier to be oxidized than the central one, probably due to the steric effect provoked by -13CH2OH which prevents the oxidation of -12CHOH-. Moreover, glyceraldehyde seems to be an important intermediate for the generation of glyceric acid

  9. The solar photovoltaics wedge: pathways for growth and potential carbon mitigation in the US

    International Nuclear Information System (INIS)

    The challenge of stabilizing global carbon emissions over the next 50 years has been framed in the context of finding seven 1.0 Gton C/year carbon reduction wedges. Solar photovoltaics (PV) could provide at least one carbon wedge, but will require significant growth in PV manufacturing capacity. The actual amount of installed PV capacity required to reach wedge-level carbon reductions will vary greatly depending on the mix of avoided fuels and the additional emissions from manufacturing PV capacity. In this work, we find that the US could reduce its carbon emissions by 0.25 Gton C/year, equal to the fraction of a global carbon wedge proportional to its current domestic electricity use, by installing 792-811 GW of PV capacity. We evaluate a series of PV growth scenarios and find that wedge-level reductions could be met by increasing PV manufacturing capacity and annual installations by 0.95 GW/year/year each year from 2009 to 2050 or by increasing up to 4 GW/year/year for a period of 4-17 years for early and late growth scenarios. This challenge of increasing PV manufacturing capacity and market demand is significant but not out of line with the recent rapid growth in both the global and US PV industry. We find that the rapid growth in PV manufacturing capacity leads to a short term increase in carbon emissions from the US electric sector. However, this increase is small, contributing less than an additional 0.3% to electric sector emissions for less than 4.5 years, alleviating recent concern regarding carbon emissions from rapid PV growth scenarios.

  10. Carbon dioxide metabolism by Actinomyces viscosus: pathways for succinate and aspartate production.

    OpenAIRE

    Brown, A T; Breeding, L C

    1980-01-01

    14C-labeled bicarbonate was incorporated into trichloroacetic acid-insoluble material by cell suspensions of A. viscosus strain M100 and also into the four-carbon fermentation product, succinate, but not into the three-carbon fermentation product, lactate. The initial step in the conversion of 14C-labeled bicarbonate into both trichloroacetic acid-insoluble material and succinate was catalyzed by the enzyme phosphoenolypyruvate carboxylase, which served to convert the glycolytic intermediate,...

  11. Spatial variability of soil carbon stock in the Urucu river basin, Central Amazon-Brazil

    International Nuclear Information System (INIS)

    The Amazon Forest plays a major role in C sequestration and release. However, few regional estimates of soil organic carbon (SOC) stock in this ecoregion exist. One of the barriers to improve SOC estimates is the lack of recent soil data at high spatial resolution, which hampers the application of new methods for mapping SOC stock. The aims of this work were: (i) to quantify SOC stock under undisturbed vegetation for the 0–30 and the 0–100 cm under Amazon Forest; (ii) to correlate the SOC stock with soil mapping units and relief attributes and (iii) to evaluate three geostatistical techniques to generate maps of SOC stock (ordinary, isotopic and heterotopic cokriging). The study site is located in the Central region of Amazon State, Brazil. The soil survey covered the study site that has an area of 80 km2 and resulted in a 1:10,000 soil map. It consisted of 315 field observations (96 complete soil profiles and 219 boreholes). SOC stock was calculated by summing C stocks by horizon, determined as a product of BD, SOC and the horizon thickness. For each one of the 315 soil observations, relief attributes were derived from a topographic map to understand SOC dynamics. The SOC stocks across 30 and 100 cm soil depth were 3.28 and 7.32 kg C m−2, respectively, which is, 34 and 16%, lower than other studies. The SOC stock is higher in soils developed in relief forms exhibiting well-drained soils, which are covered by Upland Dense Tropical Rainforest. Only SOC stock in the upper 100 cm exhibited spatial dependence allowing the generation of spatial variability maps based on spatial (co)-regionalization. The CTI was inversely correlated with SOC stock and was the only auxiliary variable feasible to be used in cokriging interpolation. The heterotopic cokriging presented the best performance for mapping SOC stock. - Highlights: • The SOC stocks across 30 and 100 cm depth were 3.28 and 7.32 kg C m−2, respectively. • SOC stocks were 34 and 16%, respectively, lower

  12. Spatial variability of soil carbon stock in the Urucu river basin, Central Amazon-Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Ceddia, Marcos Bacis, E-mail: marcosceddia@gmail.com [Department of Soil, Institute of Agronomy, Universidade Federal Rural do Rio de Janeiro (UFRRJ), Seropédica, RJ 23890-000 (Brazil); Villela, André Luis Oliveira [Colégio Técnico da UFRRJ, RJ, Seropédica 23890-000 (Brazil); Pinheiro, Érika Flávia Machado [Department of Soil, Institute of Agronomy, Universidade Federal Rural do Rio de Janeiro (UFRRJ), Seropédica, RJ 23890-000 (Brazil); Wendroth, Ole [Department of Plant & Soil Sciences, University of Kentucky, College of Agriculture, Lexington, KY (United States)

    2015-09-01

    The Amazon Forest plays a major role in C sequestration and release. However, few regional estimates of soil organic carbon (SOC) stock in this ecoregion exist. One of the barriers to improve SOC estimates is the lack of recent soil data at high spatial resolution, which hampers the application of new methods for mapping SOC stock. The aims of this work were: (i) to quantify SOC stock under undisturbed vegetation for the 0–30 and the 0–100 cm under Amazon Forest; (ii) to correlate the SOC stock with soil mapping units and relief attributes and (iii) to evaluate three geostatistical techniques to generate maps of SOC stock (ordinary, isotopic and heterotopic cokriging). The study site is located in the Central region of Amazon State, Brazil. The soil survey covered the study site that has an area of 80 km{sup 2} and resulted in a 1:10,000 soil map. It consisted of 315 field observations (96 complete soil profiles and 219 boreholes). SOC stock was calculated by summing C stocks by horizon, determined as a product of BD, SOC and the horizon thickness. For each one of the 315 soil observations, relief attributes were derived from a topographic map to understand SOC dynamics. The SOC stocks across 30 and 100 cm soil depth were 3.28 and 7.32 kg C m{sup −2}, respectively, which is, 34 and 16%, lower than other studies. The SOC stock is higher in soils developed in relief forms exhibiting well-drained soils, which are covered by Upland Dense Tropical Rainforest. Only SOC stock in the upper 100 cm exhibited spatial dependence allowing the generation of spatial variability maps based on spatial (co)-regionalization. The CTI was inversely correlated with SOC stock and was the only auxiliary variable feasible to be used in cokriging interpolation. The heterotopic cokriging presented the best performance for mapping SOC stock. - Highlights: • The SOC stocks across 30 and 100 cm depth were 3.28 and 7.32 kg C m{sup −2}, respectively. • SOC stocks were 34 and 16

  13. Mimicking a natural pathway for de novo biosynthesis: natural vanillin production from accessible carbon sources.

    Science.gov (United States)

    Ni, Jun; Tao, Fei; Du, Huaiqing; Xu, Ping

    2015-01-01

    Plant secondary metabolites have been attracting people's attention for centuries, due to their potentials; however, their production is still difficult and costly. The rich diversity of microbes and microbial genome sequence data provide unprecedented gene resources that enable to develop efficient artificial pathways in microorganisms. Here, by mimicking a natural pathway of plants using microbial genes, a new metabolic route was developed in E. coli for the synthesis of vanillin, the most widely used flavoring agent. A series of factors were systematically investigated for raising production, including efficiency and suitability of genes, gene dosage, and culture media. The metabolically engineered strain produced 97.2 mg/L vanillin from l-tyrosine, 19.3 mg/L from glucose, 13.3 mg/L from xylose and 24.7 mg/L from glycerol. These results show that the metabolic route enables production of natural vanillin from low-cost substrates, suggesting that it is a good strategy to mimick natural pathways for artificial pathway design. PMID:26329726

  14. Modeling the Contribution of Allosteric Regulation for Flux Control in the Central Carbon Metabolism of E. coli

    DEFF Research Database (Denmark)

    Machado, Daniel; Herrgard, Markus; Rocha, Isabel

    2015-01-01

    Modeling cellular metabolism is fundamental for many biotechnological applications, including drug discovery and rational cell factory design. Central carbon metabolism (CCM) is particularly important as it provides the energy and precursors for other biological processes. However, the complex...

  15. Trophic structure and pathways of biogenic carbon flow in the eastern North Water Polynya

    Science.gov (United States)

    Tremblay, Jean-Éric; Hattori, Hiroshi; Michel, Christine; Ringuette, Marc; Mei, Zhi-Ping; Lovejoy, Connie; Fortier, Louis; Hobson, Keith A.; Amiel, David; Cochran, Kirk

    2006-10-01

    In the eastern North Water, most of the estimated annual new and net production of carbon (C) occurred during the main diatom bloom in 1998. During the bloom, at least 30% of total and new phytoplankton production occurred as dissolved organic carbon (DOC) and was unavailable for short-term assimilation into the herbivorous food web or sinking export. Based on particle interceptor traps and 234Th deficits, 27% of the particulate primary production (PP) sank out of the upper 50 m, with only 7% and 1% of PP reaching the benthos at shallow (≈200 m) and deep (≈500 m) sites, respectively. Mass balance calculations and grazing estimates agree that ≈79% of PP was ingested by pelagic consumers between April and July. During this period, the vertical flux of biogenic silica (BioSi) at 50 m was equivalent to the total BioSi produced, indicating that all of the diatom production was removed from the euphotic zone as intact cells (direct sinking) or empty frustules (grazing or lysis). The estimated flux of empty frustules was consistent with rates of herbivory by the large, dominant copepods and appendicularians during incubations. Since the carbon demand of the dominant planktivorous bird, Alle alle, amounted to ≈2% of the biomass synthesized by its main prey, the large copepod Calanus hyperboreus, most of the secondary carbon production was available to pelagic carnivores. Stable isotopes indicated that the biomass of predatory amphipods, polar cod and marine mammals was derived from these herbivores, but corresponding carbon fluxes were not quantified. Our analysis shows that a large fraction of PP in the eastern North Water was ingested by consumers in the upper 50 m, leading to substantial carbon respiration and DOC accumulation in surface waters. An increasingly early and prolonged opening of the Artic Ocean is likely to promote the productivity of the herbivorous food web, but not the short-term efficiency of the particulate, biological CO 2 pump.

  16. Talc-carbonate alteration of ultramafic rocks within the Leka Ophiolite Complex, Central Norway

    Science.gov (United States)

    Bjerga, A.; Konopásek, J.; Pedersen, R. B.

    2015-06-01

    Petrographic and geochemical analyses of partly and completely serpentinized and carbonated peridotites within the ultramafic section of the Leka Ophiolite Complex have been used to elucidate the evolution of alterations and identify possible fluid sources. The alterations show no evidence for any major deformation and are located along low-angle structures that were formed in a late stage of the structural evolution of the ophiolite complex. Modeling of mineral equilibria in the SiO2-MgO-FeO-Fe2O3-CaO-H2O ± CO2 system has been utilized to constrain the conditions during serpentinization and carbonation. The partly altered peridotites consist of the mineral assemblage olivine-clinopyroxene-serpentine-magnetite-brucite and formed at temperatures Talc-carbonate rocks formed by the breakdown of the serpentine in the previously formed serpentinite rock at temperatures talc-magnesite-magnetite-dolomite. Carbon isotope values determined for dolomite from crosscutting carbonate lenses within the talc-carbonate rock yield δ13C values of ~- 5 indicative of a mantle source for the carbon required for the carbonation. Oxygen isotope values δSMOW18O of ~ 10.8-11.3‰ together with initial 87Sr/86Sri = 400Ma values of 0.7029 and 0.7063, suggest dehydration of rocks with mantle affinity as a source for the fluids. Based on analytical results and field observations we propose that the formation of the talc- and carbonate-bearing alteration zones is caused by the focused infiltration of fluids that originated at the bottom of already partly serpentinized ophiolite complex during extension-driven burial at the late stage of the Caledonian orogeny.

  17. Dissolved organic carbon in the INDEX area of the Central Indian Basin

    Digital Repository Service at National Institute of Oceanography (India)

    Sardessai, S.; DeSousa, S.N.

    milli-Q water. The acidified samples were homogenised and inorganic carbon was removed by purging a stream of carbon-dioxide free air through the samples just before the analyses. The particulate organic carbon was analysed at same depths as DOC... to the lability of a large DOC fraction in sea water. The physical characteristics of the intermediate and deep waters (500–2000m) indicate an intermediate salinity minimum zone of Antarctic Intermediate Water mass (500–1300m) and a weak salinity maximum around...

  18. Carbon isotopes in tree rings of Norway spruce (Bohemian Forest, Central Europe) exposed to atmospheric pollution

    Czech Academy of Sciences Publication Activity Database

    Šantrůčková, H.; Šantrůček, Jiří; Svoboda, M.

    Brno : ISBE CAS, 2006. s. 22. [15 Years of EU Supported Ecophysiological Research in the Czech Republic. 18.09.2006-21.09.2006, Olomouc] Keywords : Carbon isotopes * Norway spruce Subject RIV: ED - Physiology

  19. The central and eastern Arabian Sea as a perennial source of atmospheric carbon dioxide

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, V.V.S.S.; DileepKumar, M.; George, M.D.

    Seasonal (winter monsoon, intermonsoon and southwest monsoon) and interannual (between southwest monsoon seasons of 1995 and 1996) variations in total carbon dioxide (TCO sub(2)) and partial pressure of CO sub(2) (pCO sub(2)) were studied...

  20. Field Demonstration of Carbon Dioxide Miscible Flooding in the Lansing-Kansas City Formation, Central Kansas

    Energy Technology Data Exchange (ETDEWEB)

    Alan Byrnes; G. Paul Willhite; Don Green; Richard Pancake; JyunSyung Tsau; W. Lynn Watney; John Doveton; Willard Guy; Rodney Reynolds; Dave Murfin; James Daniels; Russell Martin; William Flanders; Dave Vander Griend; Eric Mork; Paul Cantrell

    2010-03-07

    A pilot carbon dioxide miscible flood was initiated in the Lansing Kansas City C formation in the Hall Gurney Field, Russell County, Kansas. The reservoir zone is an oomoldic carbonate located at a depth of about 2900 feet. The pilot consists of one carbon dioxide injection well and three production wells. Continuous carbon dioxide injection began on December 2, 2003. By the end of June 2005, 16.19 MM lb of carbon dioxide was injected into the pilot area. Injection was converted to water on June 21, 2005 to reduce operating costs to a breakeven level with the expectation that sufficient carbon dioxide was injected to displace the oil bank to the production wells by water injection. By March 7,2010, 8,736 bbl of oil were produced from the pilot. Production from wells to the northwest of the pilot region indicates that oil displaced from carbon dioxide injection was produced from Colliver A7, Colliver A3, Colliver A14 and Graham A4 located on adjacent leases. About 19,166 bbl of incremental oil were estimated to have been produced from these wells as of March 7, 2010. There is evidence of a directional permeability trend toward the NW through the pilot region. The majority of the injected carbon dioxide remains in the pilot region, which has been maintained at a pressure at or above the minimum miscibility pressure. Estimated oil recovery attributed to the CO2 flood is 27,902 bbl which is equivalent to a gross CO2 utilization of 4.8 MCF/bbl. The pilot project is not economic.

  1. Land use change and carbon cycle in arid and semi-arid lands of East and Central Asia

    Institute of Scientific and Technical Information of China (English)

    Togtohyn; Chuluun; Dennis; Ojima

    2002-01-01

    Dramatic changes in land use have occurred in arid and semi-arid landsof Asia during the 20th century. Grassland conversion into croplands and ecosystem degradation is widespread due to the high growth rate of human population and political reforms of pastoral systems. Rangeland degradation made many parts of this region vulnerable to environmental and political changes. The collapse of the livestock sector in some states of central Asia, expansion of livestock inChina and intensive degradation of grasslands in China are examples of the responses of pastoral systems to these changes over the past decades. Carbon dynamics in this region is highly variable in space and time. Land use/cover changes with widespread reduction of forest and grasslands increased carbon emission from the region.

  2. δ13C chemostratigraphy in the upper Tremadocian through lower Katian (Ordovician carbonate succession of the Siljan district, central Sweden

    Directory of Open Access Journals (Sweden)

    Oliver Lehnert

    2014-12-01

    Full Text Available Based on δ13C data from two drillcores recovered from the Siljan district, we present a first continuous carbon isotope record of the upper Tremadocian–lower Katian limestone succession of central Sweden. New names for some isotopic carbon excursions from the Cambrian–Ordovician boundary through the basal Darriwilian are introduced. The Mora 001 core from the western part of the Siljan impact structure ranges through the Lower–Middle Ordovician, whereas the Solberga 1 core from its eastern part ranges through the Middle–lower Upper Ordovician. Upper Tremadocian and Floian units are extremely condensed and include extensive stratigraphic gaps. Multiple hardgrounds, sometimes with minor karstic overprint, imply recurrent periods of erosion and/or non-deposition. Like in other parts of Sweden, the Dapingian and Darriwilian succession is characterized by a relatively complete sedimentary record and low sedimentation rates.

  3. Short Term vs Long Term Environmental Reconstruction from Carbonated Deposits of the Limagne Area (Massif Central, France)

    International Nuclear Information System (INIS)

    A 80 cm sequence has been cored from carbonated travertine in the limagne area (French Massif Central, France) in order to document recent environmental fluctuations (0-100 a) of gaseous springs, in relation to the environmental and geochemical parameters that control the isotopic signatures of modern carbonate deposits. The chronology of these finely laminated deposits that are ideal for reconstructing hydrological conditions at very narrow time steps is determined through AMS-14C and 210Pb/226Ra radiometric methods. Preliminary results highlight a high enrichment in stable isotopes (eg up to +8 per mille vs VPDB for δ13C), likely linked to both recharge temperature and degassing processes. Moreover, two general trends are superimposed: the first one, cyclic, may be correlated to the hydrologic annual/biannual budget while the second one, linear, implies a long term environmental trend. (author)

  4. Application of central composite design to optimize the amount of carbon source and prebiotics for Bifidobacterium bifidum BB01

    Directory of Open Access Journals (Sweden)

    Shu Guowei

    2016-06-01

    Full Text Available The objective of the present study was to obtain the optimum proportion of the carbon source and prebiotics for Bifidobacterium bifidum BB01 by the central composite design (CCD. The effect of carbon source (lactose and two prebiotics (inulin and fructooligosaccharides on the BB01 were observed by measuring the OD600 value, pH value and the viable counts at 18h. The final optimized concentrations of carbon source and prebiotics were: lactose 1.6%, inulin 0.26%, and fructooligosaccharides 0.22%. The result indicates that the growth of B. bifidum BB01 shows an significant increase in the optimized culture medium (p < 0.05, the OD600 value reached 1.434 at 18h, which increased 6.58% compared to the control. And the viable counts of B. bifidum BB01 increased 24.36% and reached (2.17±0.06 ×109cfu/mL. The results show that the optimization of the carbon source and prebiotics using CCD in this study is workable and necessary.

  5. Soil microbial community and its interaction with soil carbon and nitrogen dynamics following afforestation in central China.

    Science.gov (United States)

    Deng, Qi; Cheng, Xiaoli; Hui, Dafeng; Zhang, Qian; Li, Ming; Zhang, Quanfa

    2016-01-15

    Afforestation may alter soil microbial community structure and function, and further affect soil carbon (C) and nitrogen (N) dynamics. Here we investigated soil microbial carbon and nitrogen (MBC and MBN) and microbial community [e.g. bacteria (B), fungi (F)] derived from phospholipid fatty acids (PLFAs) analysis in afforested (implementing woodland and shrubland plantations) and adjacent croplands in central China. Relationships of microbial properties with biotic factors [litter, fine root, soil organic carbon (SOC), total nitrogen (TN) and inorganic N], abiotic factors (soil temperature, moisture and pH), and major biological processes [basal microbial respiration, microbial metabolic quotient (qCO2), net N mineralization and nitrification] were developed. Afforested soils had higher mean MBC, MBN and MBN:TN ratios than the croplands due to an increase in litter input, but had lower MBC:SOC ratio resulting from low-quality (higher C:N ratio) litter. Afforested soils also had higher F:B ratio, which was probably attributed to higher C:N ratios in litter and soil, and shifts of soil inorganic N forms, water, pH and disturbance. Alterations in soil microbial biomass and community structure following afforestation were associated with declines in basal microbial respiration, qCO2, net N mineralization and nitrification, which likely maintained higher soil carbon and nitrogen storage and stability. PMID:26410698

  6. Carbon Emission from Forest Fires on Scots Pine Logging Sites in the Angara Region of Central Siberia

    Science.gov (United States)

    Ivanova, G. A.; Conard, S. G.; McRae, D. J.; Kukavskaya, E. A.; Bogorodskaya, A. V.; Kovaleva, N. M.

    2010-12-01

    Wildfire and large-scale forest harvesting are the two major disturbances in the Russian boreal forests. Non-recovered logged sites total about a million hectares in Siberia. Logged sites are characterized by higher fire hazard than forest sites due to the presence of generally untreated logging slash (i.e., available fuel) which dries out much more rapidly compared to understory fuels. Moreover, most logging sites can be easily accessed by local population; this increases the risk for fire ignition. Fire impacts on the overstory trees, subcanopy woody layer, and ground vegetation biomass were estimated on 14 logged and unlogged comparison sites in the Lower Angara Region in 2009-2010 as part of the NASA-funded NEESPI project, The Influence of Changing Forestry Practices on the Effects of Wildfire and on Interactions Between Fire and Changing Climate in Central Siberia. Based on calculated fuel consumption, we estimated carbon emission from fires on both logged and unlogged burned sites. Carbon emission from fires on logged sites appeared to be twice that on unlogged sites. Soil respiration decreased on both site types after fires. This reduction may partially offset fire-produced carbon emissions. Carbon emissions from fire and post-fire ecosystem damage on logged sites are expected to increase under changing climate conditions and as a result of anticipated increases in future forest harvesting in Siberia.

  7. Dissolved Pesticide and Organic Carbon Concentrations Detected in Surface Waters, Northern Central Valley, California, 2001-2002

    Science.gov (United States)

    Orlando, James L.; Jacobson, Lisa A.; Kuivila, Kathryn M.

    2004-01-01

    Field and laboratory studies were conducted to determine the effects of pesticide mixtures on Chinook salmon under various environmental conditions in surface waters of the northern Central Valley of California. This project was a collaborative effort between the U.S. Geological Survey (USGS) and the University of California. The project focused on understanding the environmental factors that influence the toxicity of pesticides to juvenile salmon and their prey. During the periods January through March 2001 and January through May 2002, water samples were collected at eight surface water sites in the northern Central Valley of California and analyzed by the USGS for dissolved pesticide and dissolved organic carbon concentrations. Water samples were also collected by the USGS at the same sites for aquatic toxicity testing by the Aquatic Toxicity Laboratory at the University of California Davis; however, presentation of the results of these toxicity tests is beyond the scope of this report. Samples were collected to characterize dissolved pesticide and dissolved organic carbon concentrations, and aquatic toxicity, associated with winter storm runoff concurrent with winter run Chinook salmon out-migration. Sites were selected that represented the primary habitat of juvenile Chinook salmon and included major tributaries within the Sacramento and San Joaquin River Basins and the Sacramento?San Joaquin Delta. Water samples were collected daily for a period of seven days during two winter storm events in each year. Additional samples were collected weekly during January through April or May in both years. Concentrations of 31 currently used pesticides were measured in filtered water samples using solid-phase extraction and gas chromatography-mass spectrometry at the U.S. Geological Survey's organic chemistry laboratory in Sacramento, California. Dissolved organic carbon concentrations were analyzed in filtered water samples using a Shimadzu TOC-5000A total organic carbon

  8. Measurement of black carbon at Syowa station, Antarctica: seasonal variation, transport processes and pathways

    OpenAIRE

    Hara, K.; K. Osada; Yabuki, M.; Hayashi, M; Yamanouchi, T; Shiobara, M.; Wada, M.

    2008-01-01

    Measurement of black carbon (BC) was carried out at Syowa station Antarctica (69° S, 39° E) from February 2004 until January 2007. The BC concentration at Syowa ranged from below detection to 176 ng m−3 during the measurements. Higher BC concentrations were observed mostly under strong wind (blizzard) conditions due to the approach of a cyclone and blocking event. The BC-rich air masses traveled from the lower troposphere of the Atlantic and In...

  9. Carbon antisite clusters in SiC: a possible pathway to the D_{II} center

    OpenAIRE

    Mattausch, Alexander; Bockstedte, Michel; Pankratov, Oleg

    2003-01-01

    The photoluminescence center D_{II} is a persistent intrinsic defect which is common in all SiC polytypes. Its fingerprints are the characteristic phonon replicas in luminescence spectra. We perform ab-initio calculations of vibrational spectra for various defect complexes and find that carbon antisite clusters exhibit vibrational modes in the frequency range of the D_{II} spectrum. The clusters possess very high binding energies which guarantee their thermal stability--a known feature of the...

  10. Long-range transported dissolved organic matter, ions and black carbon deposited on Central Asian snow covered glaciers

    Science.gov (United States)

    Schmale, Julia; Kang, Shichang; Peltier, Richard

    2014-05-01

    Ninety percent of the Central Asian population depend on water precipitated in the mountains stored in glaciers and snow cover. Accelerated melting of the snow and ice can be induced by the deposition of airborne impurities such as mineral dust, black carbon and co-emitted species leading to significant reductions of the surface albedo. However, Central Asia is a relatively understudied region and data on the source regions, chemical and microphysical characteristics as well as modelling studies of long-range transported air pollution and dust to the Tien Shan mountains is very scarce. We studied the atmospheric aerosol deposited most likely between summer 2012 and summer 2013on three different glaciers in the Kyrgyz Republic. Samples were taken from four snow pits on the glaciers Abramov (2 pits, 39.59 °N, 71.56 °E, 4390 m elevation, 240 cm deep, and 39.62°N, 71.52 °E, 4275 m elevation, 125 cm deep), Ak-Shiirak (41.80 °N, 78.18 °E, 4325 m elevation, 75 cm deep) and Suek (41.78 °N, 77.75 °E, 4341 m elevation, 200 cm deep). The latter two glaciers are located roughly within 6 and 38 km of an operating gold mine. The snow was analyzed for black carbon, ions, metals and organic carbon. We here focus on the results of inorganic ion measurements and organic carbon speciation based on analysis with an Aerodyne high-resolution time-of-flight aerosol spectrometer (HR-ToF-AMS) and potential pollution sources that can be deduced from the chemical information as well as back trajectories. Average contributions of snow impurities measured by the HR-ToF-AMS were dominated by organic carbon. Relative concentrations of organic carbon, sulfate, nitrate and ammonium in snow were 86 %, 3 %, 9 % and 2 % respectively for Abramov, 92 %, 1 %, 5 % and 1 % for Suek, and 95 %, 1 %, 3 % and 1 % for Ak-Shiirak. Generally, impurities on Suek and Ak-Shiirak were three and five times higher than on Abramov. Mass concentrations of organic carbon were on average 6 times higher in samples

  11. METABOLIC ENGINEERING TO DEVELOP A PATHWAY FOR THE SELECTIVE CLEAVAGE OF CARBON-NITROGEN BONDS

    Energy Technology Data Exchange (ETDEWEB)

    John J. Kilbane III

    2003-12-01

    The objective of the project is to develop biochemical pathways for the selective cleavage of C-N bonds in molecules found in petroleum. The initial phase of the project will focus on the isolation or development of an enzyme capable of cleaving the C-N bond in aromatic amides, specifically 2-aminobiphenyl. The objective of the second phase of the research will be to construct a biochemical pathway for the selective removal of nitrogen from carbazole by combining the carA genes from Sphingomonas sp. GTIN11 with the gene(s) encoding an appropriate amidase. The objective of the final phase of the project will be to develop derivative CN bond cleaving enzymes that have broader substrate ranges and to demonstrate the use of such strains to selectively remove nitrogen from petroleum. The project is on schedule and no major difficulties have been encountered. During the first year of the project (October, 2002-September, 2003) enrichment culture experiments have resulted in the isolation of promising cultures that may be capable of cleaving C-N bonds in aromatic amides, several amidase genes have been cloned and are currently undergoing directed evolution to obtain derivatives that can cleave C-N bonds in aromatic amides, and the carA genes from Sphingomonas sp. GTIN11, and Pseudomonas resinovorans CA10 were cloned in vectors capable of replicating in Escherichia coli. Future research will address expression of these genes in Rhodococcus erythropolis. Enrichment culture experiments and directed evolution experiments continue to be a main focus of research activity and further work is required to obtain an appropriate amidase that will selectively cleave C-N bonds in aromatic substrates. Once an appropriate amidase gene is obtained it must be combined with genes encoding an enzyme capable of converting carbazole to 2'aminobiphenyl-2,3-diol: specifically carA genes. The carA genes from two sources have been cloned and are ready for construction of C-N bond cleavage

  12. The anatomical pathways for antennal sensory information in the central nervous system of the cricket, Gryllus bimaculatus

    OpenAIRE

    Yoritsune, Atsushi; Aonuma, Hitoshi

    2012-01-01

    Antennae are one of the major organs to detect chemo- and mechanosensory cue in crickets. Little is known how crickets process and integrate different modality of information in the brain. We thus used a number of different anatomical techniques to gain an understanding of the neural pathways extending from the antennal sensory neurons up to centers in the brain. We identified seven antennal sensory tracts (assigned as T1–7) utilizing anterograde dye filling from the antennal nerve. Tracts T1...

  13. Comparing CLM and CLM-ED as a basis for representing carbon cycling dynamics in a Central Amazonian forest

    Science.gov (United States)

    Knox, R. G.; Holm, J. A.; Koven, C. D.; Riley, W. J.; Chambers, J. Q.; Fisher, R.; Muszala, S.; Higuchi, N.

    2014-12-01

    Old-growth tropical forests are responsible for a potentially large portion of the terrestrial carbon sink, although the underlying control mechanisms of that sink, has large uncertainties. The quantification of the tropical forest carbon sink is a grand challenge of measurement scale. Therefore, there is a strong emphasis on incorporating improved vegetation structure and compositional representativeness in land-surface modeling. Vegetation demography, plant competition, mechanistic mortality, disturbance cycling, and plant functional traits strongly control carbon dynamics and energy budgets of the Earth's surface. Size and age structured scaling processes have not been represented in the widely used Community Land Model (CLM) until the recent inclusion of the Ecosystem Demography (ED) model into CLM 4.5, i.e., CLM-ED. The goal of this study was to compare how CLM-ED captured tropical carbon cycling dynamics compared to CLM and 16 years of field measurements from a central Amazonian forest. We evaluated critical carbon flux processes (Mg C ha-1 yr-1) such as net ecosystem exchange (NEE), net primary production (NPP), and autotrophic respiration (AR), and additional representations of growth and maintenance in CLM and CLM-ED. For a central Amazonian forest CLM estimated GPP from 2000-2012, with transient CO2 concentrations, to be 31.5 Mg C ha-1 yr-1 and was similar to field measurements, while initial evaluation of the newly developed CLM-ED estimated GPP to be substantially higher. The introduction of the size and age structure of ED to the CLM framework enables a finer granularity of state information in the canopy and new ways to represent canopy physics. Therefore alternative physics processes were compared, including those that are highly resolved at the cohort scale (i.e. plant groups) to those at the highly parameterized community scale (i.e. the plant canopy as a whole). CLM serves as the land-model component for nearly 40% of the Earth System Models

  14. Carbon Fluxes between Primary Metabolism and Phenolic Pathway in Plant Tissues under Stress

    Directory of Open Access Journals (Sweden)

    Sofia Caretto

    2015-11-01

    Full Text Available Higher plants synthesize an amazing diversity of phenolic secondary metabolites. Phenolics are defined secondary metabolites or natural products because, originally, they were considered not essential for plant growth and development. Plant phenolics, like other natural compounds, provide the plant with specific adaptations to changing environmental conditions and, therefore, they are essential for plant defense mechanisms. Plant defensive traits are costly for plants due to the energy drain from growth toward defensive metabolite production. Being limited with environmental resources, plants have to decide how allocate these resources to various competing functions. This decision brings about trade-offs, i.e., promoting some functions by neglecting others as an inverse relationship. Many studies have been carried out in order to link an evaluation of plant performance (in terms of growth rate with levels of defense-related metabolites. Available results suggest that environmental stresses and stress-induced phenolics could be linked by a transduction pathway that involves: (i the proline redox cycle; (ii the stimulated oxidative pentose phosphate pathway; and, in turn, (iii the reduced growth of plant tissues.

  15. Metabolic Engineering to Develop a Pathway for the Selective Cleavage of Carbon-Nitrogen Bonds

    Energy Technology Data Exchange (ETDEWEB)

    John J. Kilbane II

    2005-10-01

    The objective of the project is to develop a biochemical pathway for the selective cleavage of C-N bonds in molecules found in petroleum. Specifically a novel biochemical pathway will be developed for the selective cleavage of C-N bonds in carbazole. The cleavage of the first C-N bond in carbazole is accomplished by the enzyme carbazole dioxygenase, that catalyzes the conversion of carbazole to 2-aminobiphenyl-2,3-diol. The genes encoding carbazole dioxygenase were cloned from Sphingomonas sp. GTIN11 and from Pseudomonas resinovorans CA10. The selective cleavage of the second C-N bond has been challenging, and efforts to overcome that challenge have been the focus of recent research in this project. Enrichment culture experiments succeeded in isolating bacterial cultures that can metabolize 2-aminobiphenyl, but no enzyme capable of selectively cleaving the C-N bond in 2-aminobiphenyl has been identified. Aniline is very similar to the structure of 2-aminobiphenyl and aniline dioxygenase catalyzes the conversion of aniline to catechol and ammonia. For the remainder of the project the emphasis of research will be to simultaneously express the genes for carbazole dioxygenase and for aniline dioxygenase in the same bacterial host and then to select for derivative cultures capable of using carbazole as the sole source of nitrogen.

  16. METABOLIC ENGINEERING TO DEVELOP A PATHWAY FOR THE SELECTIVE CLEAVAGE OF CARBON-NITROGEN BONDS

    Energy Technology Data Exchange (ETDEWEB)

    John J. Kilbane II

    2004-10-01

    The objective of the project is to develop biochemical pathways for the selective cleavage of C-N bonds in molecules found in petroleum. The initial phase of the project was focused on the isolation or development of an enzyme capable of cleaving the C-N bond in aromatic amides, specifically 2-aminobiphenyl. The objective of the second phase of the research will be to construct a biochemical pathway for the selective removal of nitrogen from carbazole by combining the carA genes from Sphingomonas sp. GTIN11 with the gene(s) encoding an appropriate deaminase. The objective of the final phase of the project will be to develop derivative C-N bond cleaving enzymes that have broader substrate ranges and to demonstrate the use of such strains to selectively remove nitrogen from petroleum. During the first year of the project (October, 2002-September, 2003) enrichment culture experiments resulted in the isolation of microbial cultures that utilize aromatic amides as sole nitrogen sources, several amidase genes were cloned and were included in directed evolution experiments to obtain derivatives that can cleave C-N bonds in aromatic amides, and the carA genes from Sphingomonas sp. GTIN11, and Pseudomonas resinovorans CA10 were cloned in vectors capable of replicating in Escherichia coli. During the second year of the project (October, 2003-September, 2004) enrichment culture experiments succeeded in isolating a mixed bacterial culture that can utilize 2-aminobiphenyl as a sole nitrogen source, directed evolution experiments were focused on the aniline dioxygenase enzyme that is capable of deaminating aniline, and expression vectors were constructed to enable the expression of genes encoding C-N bond cleaving enzymes in Rhodococcus hosts. The construction of a new metabolic pathway to selectively remove nitrogen from carbazole and other molecules typically found in petroleum should lead to the development of a process to improve oil refinery efficiency by reducing the

  17. Rodingitization and carbonization processes in Triassic ultramafic cumulates and lavas, Othris Mt, Central Greece

    Science.gov (United States)

    Koutsovitis, Petros; Magganas, Andreas; Economou, Georgios

    2016-04-01

    A Triassic magmatic sequence from the south Othris region is comprised of early stage basaltic pillow lavas, as well as late stage ultramafic rocks, lava flows, high-Mg doleritic dykes and pyroclastic tuffs. The ultramafic rocks include slightly serpentinized wehrlites and lavas consisting of cumulate olivine, variably textured clinopyroxene (cumulate, quench, hollow, skeletal or blade shaped), magnesiohornblende, tremolite, phlogopite, spinel, chlorite, garnet, serpentine, calcite and devitrified glass[1]. Part of their secondary mineralogy developed due to percolation of metasomatic fluids during rodingitization and carbonization processes. In ultramafic rocks from Agia Marina and Mili, rodingitization was rather penetratively and expressed with crystallization of hydrogarnets, accompanied by secondary diopside and chlorite. Hydrogarnets are characterized by their low Ti-contents (recycling thermal carbonated seawater, leached from the rifted Triassic platform carbonates. References. [1] Koutsovitis, Magganas, Ntaflos 2012: Lithos 144-145, 177-193; [2] Koutsovitis, Magganas, Pomonis, Ntaflos 2013: Lithos 172-173, 139-157.

  18. System-based identification of toxicity pathways associated with multi-walled carbon nanotube-induced pathological responses

    Energy Technology Data Exchange (ETDEWEB)

    Snyder-Talkington, Brandi N. [Pathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505 (United States); Dymacek, Julian [Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV 26506-6070 (United States); Mary Babb Randolph Cancer Center, West Virginia University, Morgantown, WV 26506-9300 (United States); Porter, Dale W.; Wolfarth, Michael G.; Mercer, Robert R. [Pathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505 (United States); Pacurari, Maricica [Mary Babb Randolph Cancer Center, West Virginia University, Morgantown, WV 26506-9300 (United States); Denvir, James [Department of Biochemistry and Microbiology, Marshall University, Huntington, WV 25755 (United States); Castranova, Vincent [Pathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505 (United States); Qian, Yong, E-mail: yaq2@cdc.gov [Pathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505 (United States); Guo, Nancy L., E-mail: lguo@hsc.wvu.edu [Mary Babb Randolph Cancer Center, West Virginia University, Morgantown, WV 26506-9300 (United States)

    2013-10-15

    The fibrous shape and biopersistence of multi-walled carbon nanotubes (MWCNT) have raised concern over their potential toxicity after pulmonary exposure. As in vivo exposure to MWCNT produced a transient inflammatory and progressive fibrotic response, this study sought to identify significant biological processes associated with lung inflammation and fibrosis pathology data, based upon whole genome mRNA expression, bronchoaveolar lavage scores, and morphometric analysis from C57BL/6J mice exposed by pharyngeal aspiration to 0, 10, 20, 40, or 80 μg MWCNT at 1, 7, 28, or 56 days post-exposure. Using a novel computational model employing non-negative matrix factorization and Monte Carlo Markov Chain simulation, significant biological processes with expression similar to MWCNT-induced lung inflammation and fibrosis pathology data in mice were identified. A subset of genes in these processes was determined to be functionally related to either fibrosis or inflammation by Ingenuity Pathway Analysis and was used to determine potential significant signaling cascades. Two genes determined to be functionally related to inflammation and fibrosis, vascular endothelial growth factor A (vegfa) and C-C motif chemokine 2 (ccl2), were confirmed by in vitro studies of mRNA and protein expression in small airway epithelial cells exposed to MWCNT as concordant with in vivo expression. This study identified that the novel computational model was sufficient to determine biological processes strongly associated with the pathology of lung inflammation and fibrosis and could identify potential toxicity signaling pathways and mechanisms of MWCNT exposure which could be used for future animal studies to support human risk assessment and intervention efforts. - Highlights: • A novel computational model identified toxicity pathways matching in vivo pathology. • Systematic identification of MWCNT-induced biological processes in mouse lungs • MWCNT-induced functional networks of lung

  19. System-based identification of toxicity pathways associated with multi-walled carbon nanotube-induced pathological responses

    International Nuclear Information System (INIS)

    The fibrous shape and biopersistence of multi-walled carbon nanotubes (MWCNT) have raised concern over their potential toxicity after pulmonary exposure. As in vivo exposure to MWCNT produced a transient inflammatory and progressive fibrotic response, this study sought to identify significant biological processes associated with lung inflammation and fibrosis pathology data, based upon whole genome mRNA expression, bronchoaveolar lavage scores, and morphometric analysis from C57BL/6J mice exposed by pharyngeal aspiration to 0, 10, 20, 40, or 80 μg MWCNT at 1, 7, 28, or 56 days post-exposure. Using a novel computational model employing non-negative matrix factorization and Monte Carlo Markov Chain simulation, significant biological processes with expression similar to MWCNT-induced lung inflammation and fibrosis pathology data in mice were identified. A subset of genes in these processes was determined to be functionally related to either fibrosis or inflammation by Ingenuity Pathway Analysis and was used to determine potential significant signaling cascades. Two genes determined to be functionally related to inflammation and fibrosis, vascular endothelial growth factor A (vegfa) and C-C motif chemokine 2 (ccl2), were confirmed by in vitro studies of mRNA and protein expression in small airway epithelial cells exposed to MWCNT as concordant with in vivo expression. This study identified that the novel computational model was sufficient to determine biological processes strongly associated with the pathology of lung inflammation and fibrosis and could identify potential toxicity signaling pathways and mechanisms of MWCNT exposure which could be used for future animal studies to support human risk assessment and intervention efforts. - Highlights: • A novel computational model identified toxicity pathways matching in vivo pathology. • Systematic identification of MWCNT-induced biological processes in mouse lungs • MWCNT-induced functional networks of lung

  20. Energy outlook to 2035 in Asia and its pathways towards a low carbon energy system

    Energy Technology Data Exchange (ETDEWEB)

    Komiyama, Ryoichi

    2010-09-15

    This report analyzes energy outlook in Asia and the world to 2035. In Technologically Advanced Scenario, advanced low-carbon technology yields, in 2035, 2,305 Mtoe or 14% of the saving in world primary energy demand and 12.3 Gt or 30% of the reduction in global CO2 emissions compared with the Reference Scenario. In these savings, Asia will account for 58% in the world primary energy reduction and 55% of the world CO2 mitigation, emphasizing immense potential of energy and CO2 saving in Asia and the importance of the deployment of clean energy technology through technology transfer to Asian region.

  1. Sup(14)C activity of dissolved organic carbon fractions in the north-central Pacific and Sargasso Sea

    International Nuclear Information System (INIS)

    Radiocarbon measurements of dissolved organic carbon (DOC) oxidizable by ultraviolet irradiation (DOCuv) yielded apparent ages of ∼6,000 yr in the deep waters of the oligotrophic north-central Pacific gyre. Recent reports of a potentially larger pool of DOC as measured by high-temperature catalytic combustion (DOChtc) using discrete injections of sea water have led to speculation that 'younger', more recently produced DOC could contribute significantly to overall oceanic organic carbon fluxes, owing to its suspected greater biological lability. Here we present a comparison of Δ14C (the deviation in parts per thousand from the 14C activity of nineteenth-century wood) of the DOChtc, DOCuv and humic substances in profiles from the oligotrophic north-central Pacific and Sargasso Sea. For each ocean, the Δ14C values of all three fractions are remarkably similar, yielding no evidence for a component of DOC that is cycled through the system on timescales shorter than several thousands of years. We observe an age difference between the two oceans of ∼2,000 yr for the deepest DOC, which can largely be accounted for by differences in the Δ14C of the DOC sources to the deep basins, and by the different deep-water circulation patterns and transit times in the two oceans. (author)

  2. Origin of the groundwater salinity and geochemical processes in detrital and carbonate aquifers: Case of Chougafiya basin (Central Tunisia)

    Science.gov (United States)

    Farid, Intissar; Zouari, Kamel; Rigane, Adel; Beji, Ridha

    2015-11-01

    Comprehensive investigations of groundwaters were performed in the detrital and carbonate aquifers of the Chougafiya basin, central Tunisia. In the present review, hydrochemistry and isotopic tools were combined to get an insight into the processes controlling mineralization, recharge conditions, flow pattern of groundwater and C chemistry in the investigated hydrological system. Analysis of the dissolved constituents revealed that several processes controlled the observed chemical composition: (i) the dissolution of evaporitic minerals, (ii) cation exchange reactions, (iii) sulfate reduction under anaerobic conditions, (iv) incongruent dissolution of carbonate minerals (calcite, dolomite) coupled with gypsum dissolution and calcite precipitation, and (v) silicates weathering. Data inferred from 18O and deuterium isotopes in groundwater samples indicated recharge with modern rainfall. Water characterized by lower δ18O and δ2H values is interpreted as recharged by non-evaporated rainfall originating from Mediterranean and Atlantic air masses. However, water with relatively enriched δ18O and δ2H contents is thought to reflect the occurrence of an evaporation process related to the long term practice of flood irrigation. The radiogenic (3H) isotope data provided insight into the presence of two recharge periods in the investigated groundwaters. Waters with 3H contents of 1 TU clearly suggested the occurrence of a contemporaneous recharge probably during the last two decades. Carbon isotopes provided some insights into the timescales of groundwater flow, but mainly revealed that main sources of C are active in the system. These are likely: dissolved biogenic CO2, carbonate dissolution and incongruent reaction of the carbonate matrix. Mean residence times were determined after correction of the initial activities for dead C from the rock matrix and suggest ages ranging from the present day to the Holocene in both Upper Cretaceous and Mio-pliocene groundwaters.

  3. IFN-γ inhibits central nervous system myelination through both STAT1-dependent and STAT1-independent pathways

    OpenAIRE

    Lin, Wensheng; Lin, Yifeng

    2010-01-01

    Immune cytokine interferon-γ (IFN-γ) plays a crucial role in immune-mediated demyelination diseases such as multiple sclerosis and experimental autoimmune encephalomyelitis (EAE). Our previous studies have shown that enforced expression of IFN-γ in the central nervous system (CNS) inhibits developmental myelination or remyelination in EAE demyelinated lesions. While many of the cellular actions of IFN-γ result from its activation of the signal transducer and activator of transcription 1 (STAT...

  4. Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana.

    Science.gov (United States)

    Smith, Sarah R; Glé, Corine; Abbriano, Raffaela M; Traller, Jesse C; Davis, Aubrey; Trentacoste, Emily; Vernet, Maria; Allen, Andrew E; Hildebrand, Mark

    2016-05-01

    Diatoms are one of the most productive and successful photosynthetic taxa on Earth and possess attributes such as rapid growth rates and production of lipids, making them candidate sources of renewable fuels. Despite their significance, few details of the mechanisms used to regulate growth and carbon metabolism are currently known, hindering metabolic engineering approaches to enhance productivity. To characterize the transcript level component of metabolic regulation, genome-wide changes in transcript abundance were documented in the model diatom Thalassiosira pseudonana on a time-course of silicon starvation. Growth, cell cycle progression, chloroplast replication, fatty acid composition, pigmentation, and photosynthetic parameters were characterized alongside lipid accumulation. Extensive coordination of large suites of genes was observed, highlighting the existence of clusters of coregulated genes as a key feature of global gene regulation in T. pseudonana. The identity of key enzymes for carbon metabolic pathway inputs (photosynthesis) and outputs (growth and storage) reveals these clusters are organized to synchronize these processes. Coordinated transcript level responses to silicon starvation are probably driven by signals linked to cell cycle progression and shifts in photophysiology. A mechanistic understanding of how this is accomplished will aid efforts to engineer metabolism for development of algal-derived biofuels. PMID:26844818

  5. Pathway analysis using (13) C-glycerol and other carbon tracers reveals a bipartite metabolism of Legionella pneumophila.

    Science.gov (United States)

    Häuslein, Ina; Manske, Christian; Goebel, Werner; Eisenreich, Wolfgang; Hilbi, Hubert

    2016-04-01

    Amino acids represent the prime carbon and energy source for Legionella pneumophila, a facultative intracellular pathogen, which can cause a life-threatening pneumonia termed Legionnaires' disease. Genome, transcriptome and proteome studies indicate that L. pneumophila also utilizes carbon substrates other than amino acids. We show here that glycerol promotes intracellular replication of L. pneumophila in amoeba or macrophages (but not extracellular growth) dependent on glycerol-3-phosphate dehydrogenase, GlpD. An L. pneumophila mutant strain lacking glpD was outcompeted by wild-type bacteria upon co-infection of amoeba, indicating an important role of glycerol during infection. Isotopologue profiling studies using (13) C-labelled substrates were performed in a novel minimal defined medium, MDM, comprising essential amino acids, proline and phenylalanine. In MDM, L. pneumophila utilized (13) C-labelled glycerol or glucose predominantly for gluconeogenesis and the pentose phosphate pathway, while the amino acid serine was used for energy generation via the citrate cycle. Similar results were obtained for L. pneumophila growing intracellularly in amoeba fed with (13) C-labelled glycerol, glucose or serine. Collectively, these results reveal a bipartite metabolism of L. pneumophila, where glycerol and carbohydrates like glucose are mainly fed into anabolic processes, while serine serves as major energy supply. PMID:26691313

  6. Cropping Intensity Impacts on Soil Aggregation and Carbon Sequestration in the Central Great Plains

    Science.gov (United States)

    The predominant cropping system in the Central Great Plains is conventional tillage (CT) winter wheat–summer fallow. We investigated the effect 15 yrs of variable cropping intensity, fallow frequency, and tillage (CT and no-till [NT]) had on soil organic C (SOC) sequestration, particulate organic ma...

  7. Isotopic studies of beach rock carbonates from Konkan, central west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Kumar, B.; Rajamanickam, G.V.; Gujar, A.R.

    .7% (PDB) and delta sup(18)O signatures lie in a narrow range of +27.5 to +28.6% (SMOW), respectively. Isotopic data obtained in this study show that cementation of beach rock carbonates might have taken place in a shallow vadose zone. The large variations...

  8. Assessing “gas transition” pathways to low carbon electricity – An Australian case study

    International Nuclear Information System (INIS)

    Highlights: • High gas electricity portfolios are higher cost and risk compared with renewables. • High gas portfolios do not achieve required greenhouse gas emissions reductions. • Optimal portfolios are 60% renewables by 2030 and 80–100% by 2050. • Firm capacity is provided by coal-fired plant in a peaking role rather than gas. - Abstract: Future generation portfolios including varying quantities of gas-fired and renewable generation were compared on the basis of expected costs, cost risk and greenhouse gas emissions, with a view to understanding the merits and disadvantages of gas and renewable technologies. A Monte-Carlo based generation portfolio modelling tool was applied to take into account the effects of highly uncertain future gas prices, carbon pricing policy and electricity demand. Results suggest that portfolios sourcing significant quantities of energy from gas-fired generation in 2030 and 2050 are likely to be significantly higher cost and significantly higher risk than the other alternatives considered. High gas portfolios also do not achieve the greenhouse gas (GHG) emissions reductions levels that appear required to avoid dangerous global warming. For example, portfolios that source 95% of energy from gas-fired generation in 2050 experience expected generation costs that are $65/MW h (40%) higher than portfolios that source only 20% of energy from gas-fired generation. These high gas portfolios also exhibit a cost risk (standard deviation in cost) that is three times higher. The lowest cost portfolios in 2050 source less than 20% of energy from gas with the remaining energy sourced from renewables. Even in the absence of a carbon price, the lowest cost portfolio in 2050 sources only 30% of energy from gas-fired generation, with the remaining 70% of energy being sourced from renewable technologies. Results suggest the optimal strategy for minimising costs, minimising cost risk and reducing GHG emission levels in future electricity

  9. The use of carbon isotopes in the study of groundwater of the Bambui calcareous-central region of Bahia (Brazil)

    International Nuclear Information System (INIS)

    Groundwater of 34 wells and of a spring of the Bambui limestone aquifer, in central Bahia, Brazil, were analized for the 14C and 13C content. One sample of soil CO2 and four of soil organic matter were analized for 13C. From these data were calculated the 14C ages of these waters. A major difficulty in the use of radiocarbon in groundwater hydrology is the estimation of the initial 14C concentration. In many cases, this can be simply determined by the fraction of carbon derived from soil gas, relative to the total carbon dissolved, by the use of Δ13C of the soil organic matter, limestone and dissolved carbon in water. This approach does not seem to be completely valid in arid ou semi-arid regions, specially where the pH of the soil is relatively high. In this case, the isotopic composition of the soil water can be determined if the pCO2 and pH of the soil can be estimated and if the isotopic composition of the soil CO2 can be known. The final isotopic composition of the groundwater is a combination of the isotopic composition of the soil water and any limestone thereafter dissolved. The 14C ages of the water samples analized ranged from modern to about 13000 years. The recharge areas of the aquifer are clearly indicated, as the probable underground flow directions. The interpretation of the radiocarbon data is in accord with the hydrologic data. (Author)

  10. Exhaustive Analysis of a Genotype Space Comprising 10(15 Central Carbon Metabolisms Reveals an Organization Conducive to Metabolic Innovation.

    Directory of Open Access Journals (Sweden)

    Sayed-Rzgar Hosseini

    2015-08-01

    Full Text Available All biological evolution takes place in a space of possible genotypes and their phenotypes. The structure of this space defines the evolutionary potential and limitations of an evolving system. Metabolism is one of the most ancient and fundamental evolving systems, sustaining life by extracting energy from extracellular nutrients. Here we study metabolism's potential for innovation by analyzing an exhaustive genotype-phenotype map for a space of 10(15 metabolisms that encodes all possible subsets of 51 reactions in central carbon metabolism. Using flux balance analysis, we predict the viability of these metabolisms on 10 different carbon sources which give rise to 1024 potential metabolic phenotypes. Although viable metabolisms with any one phenotype comprise a tiny fraction of genotype space, their absolute numbers exceed 10(9 for some phenotypes. Metabolisms with any one phenotype typically form a single network of genotypes that extends far or all the way through metabolic genotype space, where any two genotypes can be reached from each other through a series of single reaction changes. The minimal distance of genotype networks associated with different phenotypes is small, such that one can reach metabolisms with novel phenotypes--viable on new carbon sources--through one or few genotypic changes. Exceptions to these principles exist for those metabolisms whose complexity (number of reactions is close to the minimum needed for viability. Increasing metabolic complexity enhances the potential for both evolutionary conservation and evolutionary innovation.

  11. Central estrogenic pathways protect against the depressant action of acute nicotine on reflex tachycardia in female rats

    International Nuclear Information System (INIS)

    We have previously shown that acute exposure of male rats to nicotine preferentially attenuates baroreceptor-mediated control of reflex tachycardia in contrast to no effect on reflex bradycardia. Here, we investigated whether female rats are as sensitive as their male counterparts to the baroreflex depressant effect of nicotine and whether this interaction is modulated by estrogen. Baroreflex curves relating reflex chronotropic responses evoked by i.v. doses (1–16 μg/kg) of phenylephrine (PE) or sodium nitroprusside (SNP), were constructed in conscious freely moving proestrus, ovariectomized (OVX), and estrogen (50 μg/kg/day s.c., 5 days)-replaced OVX (OVXE2) rats. Slopes of the curves were taken as a measure of baroreflex sensitivity (BRSPE and BRSSNP). Nicotine (100 μg/kg i.v.) reduced BRSSNP in OVX rats but not in proestrus or OVXE2 rats. The attenuation of reflex tachycardia by nicotine was also evident in diestrus rats, which exhibited plasma estrogen levels similar to those of OVX rats. BRSPE was not affected by nicotine in all rat preparations. Experiments were then extended to determine whether central estrogenic receptors modulate the nicotine–BRSSNP interaction. Intracisteral (i.c.) treatment of OVX rats with estrogen sulfate (0.2 μg/rat) abolished the BRSSNP attenuating effect of i.v. nicotine. This protective effect of estrogen disappeared when OVX rats were pretreated with i.c. ICI 182,780 (50 μg/rat, selective estrogen receptor antagonist). Together, these findings suggest that central neural pools of estrogen receptors underlie the protection offered by E2 against nicotine-induced baroreceptor dysfunction in female rats. -- Highlights: ► Estrogen protects against the depressant effect of nicotine on reflex tachycardia. ► The baroreflex response and estrogen status affect the nicotine–BRS interaction. ► The protection offered by estrogen is mediated via central estrogen receptors.

  12. Osteosarcoma of the lumbosacral spine invading the central venous pathways, right-sided cardiac chambers, and pulmonary artery

    Energy Technology Data Exchange (ETDEWEB)

    Hines, Neely; Lantos, George; Hochzstein, Jay [Jacobi Medical Center/Albert Einstein College of Medicine, Department of Radiology, Bronx, NY (United States); Gitig, Alon [Montefiore Medical Center/Albert Einstein College of Medicine, Department of Cardiology, Bronx, NY (United States); DeAnda, Abe [Montefiore Medical Center/Albert Einstein College of Medicine, Department of Cardiothoracic Surgery, Bronx, NY (United States)

    2007-11-15

    We report an unusual case of lumbosacral osteogenic sarcoma with cauda equina syndrome and invasion into the central venous and cardiac system. A 41-year-old Hispanic man presented to the emergency department complaining of severe low back pain, cauda equina syndrome, bilateral lower extremity edema, and an extra heart sound on physical examination. CT of the lumbosacral spine done in the emergency department demonstrated a sclerotic lesion in the sacrum with cortical destruction, extension into the spinal canal and a bulky soft tissue mass containing calcifications. Supplemental MRI demonstrated marrow replacement of L4, L5, and the sacrum, soft tissue extension of the tumor, and invasion iliac veins extending into the IVC; however, the full extent of the intravascular tumor was not seen on this examination. Surgical laminectomy and biopsy of the spinal tumor provided the diagnosis of osteogenic sarcoma. A transthoracic echocardiogram was performed while the patient was recovering due to nonsustained ventricular tachycardia, which showed an echogenic mass within the right atrium and ventricle. CT pulmonary angiogram confirmed the echocardiogram showing a tumor extending through the pulmonary valve into the main pulmonary artery. The patient underwent en bloc resection of the tumor from the venous and cardiac systems. Histologic examination of the tumor confirmed osteogenic sarcoma. While vertebral osteogenic sarcoma is uncommon, invasion of the spinal canal is common in these tumors. However, tumor extending into the central venous and cardiac system is rare. The previously reported cases of central venous and cardiac involvement have been related to distant metastases or primary cardiac osteosarcomas. There is only one other reported case of direct extension into the venous system by an iliac bone osteosarcoma in an adolescent; however, the tumor did not extend into the pulmonary circulation. (orig.)

  13. Carbon budget of Nyungwe Tropical Montane Rain Forest in Central Africa

    Science.gov (United States)

    Nyirambangutse, B.; Zibera, E.; Uwizeye, F. K.; Hansson, L.; Nsabimana, D.; Pleijel, H.; Uddling, J.; Wallin, G.

    2015-12-01

    African tropical rainforests host rich biodiversity and play many roles at different scales such as local, regional and global, in the functioning of the earth system. Despite that the African tropical forests are the world's second largest, it has been neglected in terms of understanding the storage and fluxes of carbon and other nutrients. The question of whether this biome is a net sink or source of atmospheric CO2 is still not answered, and little is known concerning the climate change response. Tropical montane forests are even more poorly sampled compared with their importance. Deeper understanding of these ecosystems is required to provide insights on how they might react under global change. To answer questions related to these issues for African tropical montane forests, 15 permanent 0.5 ha plots were established in 2011 in Nyungwe tropical montane rainforest gazetted as a National Park to protect its extensive floral and faunal diversity. The plots are arranged along an east-westerly transect and includes both primary and secondary forest communities. The study is connected to the global ecosystem monitoring network (GEM, http://gem.tropicalforests.ox.ac.uk/). The aim is to characterize spatial and temporal heterogeneity of carbon and nutrient dynamics processes. The role of microclimate, topography, human disturbances, and plant species to the variability of these pools and processes will be explored. We compare stocks and fluxes of carbon and nutrients of the secondary and primary forest communities. The carbon stock are determined by an inventory of height and diameter at breast height (dbh) of all trees with a dbh above 5 cm, wood density, biomass of understory vegetation, leaf area index, standing and fallen dead wood, fine root biomass and organic content of various soil layers (litter, organic and mineral soil down to 45 cm depth). The carbon fluxes are determined by measurements of photosynthesis and respiration of leaves, above and below ground

  14. Radon, carbon dioxide and fault displacements in central Europe related to the Tohoku earthquake

    International Nuclear Information System (INIS)

    Tectonic instability may be measured directly using extensometers installed across active faults or it may be indicated by anomalous natural gas concentrations in the vicinity of active faults. This paper presents the results of fault displacement monitoring at two sites in the Bohemian Massif and Western Carpathians. These data have been supplemented by radon monitoring in the Mladec Caves and by carbon dioxide monitoring in the Zbrasov Aragonite Caves. A significant period of tectonic instability is indicated by changes in the fault displacement trends and by anomalous radon and carbon dioxide concentrations. This was recorded around the time of the catastrophic MW = 9.0 Tohoku Earthquake, which hit eastern Japan on 11 March 2011. It is tentatively suggested that the Tohoku Earthquake in the Pacific Ocean and the unusual geodynamic activity recorded in the Bohemian Massif and Western Carpathians both reflect contemporaneous global tectonic changes. (authors)

  15. The Oligocene-Miocene stratigraphic evolution of the Majella carbonate platform (Central Apennines, Italy)

    Science.gov (United States)

    Brandano, Marco; Cornacchia, Irene; Raffi, Isabella; Tomassetti, Laura

    2016-03-01

    The stratigraphic architecture of the Bolognano Formation documents the evolution of the Majella carbonate platform in response to global and local changes that affected the Mediterranean area during the Oligocene-Miocene interval. The Bolognano Formation consists of a homoclinal ramp that developed in a warm, subtropical environment. Five different lithofacies associations have been identified: Lepidocyclina calcarenites, cherty marly limestones, bryozon calcarenites, hemipelagic marls and marly limestones, and Lithothamnion limestones. Each association corresponds to a single lithostratigraphic unit except for the Lepidocyclina calcarenites that form two distinct lithostratigraphic units (Lepidocyclina calcarenites 1 and 2). These six units reflect alternation of shallow-water carbonate production and drowning. Specifically, two of the three stages of shallow-water carbonate production regard the development of wide dune fields within the middle ramp, one stage dominated by red algae and a sea-grass carbonate factory, whereas the two drowning phases are represented by marly cherty limestones and calcareous marls. A new biostratigraphic framework for Bolognano Formation is presented, based on high-resolution analysis of calcareous nannofossil assemblages, which proved to be very useful for biostratigraphic constraints also in shallow-water settings. Using this approach, we have linked the first drowning phase, late Chattian-Aquitanian p.p. in age, to western Mediterranean volcanism and the Mi-1 event, and the second drowning phase, late Burdigalian-Serravallian in age, to the closure of the Indo-Pacific passage and the occurrence of the global Monterey event. These results permit a new deciphering, in terms of sequence stratigraphy, of the Bolognano Formation that is interpreted as a 2nd-order super-sequence that can be subdivided into 3 transgressive-regressive sequences.

  16. Radon, carbon dioxide and fault displacements in Central Europe related to the Tohoku earthquake

    Czech Academy of Sciences Publication Activity Database

    Briestenský, Miloš; Thinová, L.; Praksová, R.; Stemberk, Josef; Rowberry, Matthew David; Knejflová, Z.

    2014-01-01

    Roč. 160, 1-3 (2014), s. 78-82. ISSN 0144-8420 R&D Projects: GA MŠk LM2010008; GA ČR GAP210/12/0573 Institutional support: RVO:67985891 Keywords : carbon dioxide * radon * fault displacements * Tohoku earthquake Subject RIV: DC - Siesmology, Volcanology, Earth Structure Impact factor: 0.913, year: 2014 http://rpd.oxfordjournals.org/content/early/2014/04/06/rpd.ncu090

  17. Seasonal variations of water-soluble organic carbon, dicarboxylic acids, ketoacids, and α-dicarbonyls in the central Himalayan aerosols

    Directory of Open Access Journals (Sweden)

    K. Kawamura

    2012-01-01

    Full Text Available Aerosol samples were collected from a high elevation mountain site (Nainital, India; 1958 m a.s.l. in the central Himalayas, which provide an isolated platform above the planetary boundary layer to better understand the composition of the remote continental troposphere. The samples were analyzed for water-soluble dicarboxylic acids (C2–C12 and related compounds (ketocarboxylic acids and α-dicarbonyls, as well as organic carbon, elemental carbon and water soluble organic carbon. The contributions of total dicarboxylic acids to total aerosol carbon during wintertime were 1.7 and 1.8%, for day and night, respectively whereas they significantly reduced during summer. Molecular distributions of diacids demonstrated that oxalic (C2 acid was the most abundant species followed by C4 and C3 diacids. The average concentrations of total diacids (433 ± 108 ng m−3, ketoacids (48 ± 23 ng m−3, and α-dicarbonyls (9 ± 4 ng m−3 were similar to those from Asian cities such as Tokyo, Beijing and Hong Kong. During summer season most of the organic species were several times more abundant than in winter. Phthalic acid, which originates from oxidation of polycyclic aromatic hydrocarbons such as naphthalene, was found to be 7 times higher in summer than winter. This feature has not been reported in atmospheric aerosols. Based on molecular distributions and air mass backward trajectories, we report that dicarboxylic acids and related compounds in Himalayan aerosols are influenced by the anthropogenic activities from highly populated Indo-Gangetic plain areas.

  18. Central estrogenic pathways protect against the depressant action of acute nicotine on reflex tachycardia in female rats

    Energy Technology Data Exchange (ETDEWEB)

    El-Mas, Mahmoud M., E-mail: mahelm@hotmail.com; Fouda, Mohamed A.; El-gowilly, Sahar M.; Saad, Evan I.

    2012-02-01

    We have previously shown that acute exposure of male rats to nicotine preferentially attenuates baroreceptor-mediated control of reflex tachycardia in contrast to no effect on reflex bradycardia. Here, we investigated whether female rats are as sensitive as their male counterparts to the baroreflex depressant effect of nicotine and whether this interaction is modulated by estrogen. Baroreflex curves relating reflex chronotropic responses evoked by i.v. doses (1–16 μg/kg) of phenylephrine (PE) or sodium nitroprusside (SNP), were constructed in conscious freely moving proestrus, ovariectomized (OVX), and estrogen (50 μg/kg/day s.c., 5 days)-replaced OVX (OVXE{sub 2}) rats. Slopes of the curves were taken as a measure of baroreflex sensitivity (BRS{sub PE} and BRS{sub SNP}). Nicotine (100 μg/kg i.v.) reduced BRS{sub SNP} in OVX rats but not in proestrus or OVXE{sub 2} rats. The attenuation of reflex tachycardia by nicotine was also evident in diestrus rats, which exhibited plasma estrogen levels similar to those of OVX rats. BRS{sub PE} was not affected by nicotine in all rat preparations. Experiments were then extended to determine whether central estrogenic receptors modulate the nicotine–BRS{sub SNP} interaction. Intracisteral (i.c.) treatment of OVX rats with estrogen sulfate (0.2 μg/rat) abolished the BRS{sub SNP} attenuating effect of i.v. nicotine. This protective effect of estrogen disappeared when OVX rats were pretreated with i.c. ICI 182,780 (50 μg/rat, selective estrogen receptor antagonist). Together, these findings suggest that central neural pools of estrogen receptors underlie the protection offered by E{sub 2} against nicotine-induced baroreceptor dysfunction in female rats. -- Highlights: ► Estrogen protects against the depressant effect of nicotine on reflex tachycardia. ► The baroreflex response and estrogen status affect the nicotine–BRS interaction. ► The protection offered by estrogen is mediated via central estrogen receptors.

  19. Liquiritigenin Protects Rats from Carbon Tetrachloride Induced Hepatic Injury through PGC-1α Pathway

    Directory of Open Access Journals (Sweden)

    Yiping Zhang

    2015-01-01

    Full Text Available The lack of effective treatment for liver cirrhosis and hepatocellular carcinomas imposes serious challenges to the healthcare system. Here, we investigated the efficacy and mechanism of liquiritigenin involved in preventing or retarding the progression of liver diseases in a rat model with chronic carbon tetrachloride (CCl4 exposure. Sprague Dawley rats were given CCl4 and lliquiritigenin alone or simultaneously for 8 weeks before liver was harvested to check histological changes by Hematoxylin and Eosin (H&E staining, apoptosis by TUNEL assay, ROS by dihydroethidium staining, antioxidant enzyme activities and malondialdehyde using specific kits, and gene expression by quantitative real-time PCR and western blot. Chronic CCl4 exposure caused profound changes in liver histology with extensive hepatocyte death (necrosis and apoptosis, fat accumulation, and infiltration of inflammatory cells, accompanied by depressed activities of antioxidant enzymes, increased oxidative stress, elevated expression of inflammation and fibrotic genes, and downregulation of PGC-1α, ND1, and Bcl-x in rat liver. All these changes were abolished or alleviated by lliquiritigenin. The results demonstrated that liquiritigenin is effective in protecting liver from injury or treating chronic liver diseases. The modulation of PGC-1α and its downstream genes might play a critical role in relieving CCl4-induced hepatic pathogenesis by liquiritigenin.

  20. Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, central Great Barrier Reef

    Directory of Open Access Journals (Sweden)

    R. Albright

    2013-10-01

    Full Text Available Ocean acidification is projected to shift coral reefs from a state of net accretion to one of net dissolution this century. Presently, our ability to predict global-scale changes to coral reef calcification is limited by insufficient data relating seawater carbonate chemistry parameters to in situ rates of reef calcification. Here, we investigate diel and seasonal trends in carbonate chemistry of the Davies Reef flat in the central Great Barrier Reef and relate these trends to benthic carbon fluxes by quantifying net ecosystem calcification (nec and net community production (ncp. Results show that seawater carbonate chemistry of the Davies Reef flat is highly variable over both diel and seasonal cycles. pH (total scale ranged from 7.92 to 8.17, pCO2 ranged from 272 to 542 μatm, and aragonite saturation state (Ωarag ranged from 2.9 to 4.1. Diel cycles in carbonate chemistry were primarily driven by ncp, and warming explained 35% and 47% of the seasonal shifts in pCO2 and pH, respectively. Daytime ncp averaged 37 ± 19 mmol C m−2 h−1 in summer and 33 ± 13 mmol C m−2 h−1 in winter; nighttime ncp averaged −30 ± 25 and −7 ± 6 mmol C m−2 h−1 in summer and winter, respectively. Daytime nec averaged 11 ± 4 mmol CaCO3 m−2 h−1 in summer and 8 ± 3 mmol CaCO3 m−2 h−1 in winter, whereas nighttime nec averaged 2 ± 4 mmol and −1 ± 3 mmol CaCO3 m−2 h−1 in summer and winter, respectively. Net ecosystem calcification was highly sensitive to changes in Ωarag for both seasons, indicating that relatively small shifts in Ωarag may drive measurable shifts in calcification rates, and hence carbon budgets, of coral reefs throughout the year.

  1. Carbon monoxide alleviates ethanol-induced oxidative damage and inflammatory stress through activating p38 MAPK pathway

    Energy Technology Data Exchange (ETDEWEB)

    Li, Yanyan; Gao, Chao; Shi, Yanru; Tang, Yuhan; Liu, Liang; Xiong, Ting; Du, Min [Department of Nutrition and Food Hygiene, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Ministry of Education Lab of Environment and Health, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Hubei Key Laboratory of Food Nutrition and Safety, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Xing, Mingyou [Department of Infectious Diseases, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Liu, Liegang [Department of Nutrition and Food Hygiene, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Ministry of Education Lab of Environment and Health, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Hubei Key Laboratory of Food Nutrition and Safety, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Yao, Ping, E-mail: yaoping@mails.tjmu.edu.cn [Department of Nutrition and Food Hygiene, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Ministry of Education Lab of Environment and Health, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China); Hubei Key Laboratory of Food Nutrition and Safety, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan 430030 (China)

    2013-11-15

    Stress-inducible protein heme oxygenase-1(HO-1) is well-appreciative to counteract oxidative damage and inflammatory stress involving the pathogenesis of alcoholic liver diseases (ALD). The potential role and signaling pathways of HO-1 metabolite carbon monoxide (CO), however, still remained unclear. To explore the precise mechanisms, ethanol-dosed adult male Balb/c mice (5.0 g/kg.bw.) or ethanol-incubated primary rat hepatocytes (100 mmol/L) were pretreated by tricarbonyldichlororuthenium (II) dimmer (CORM-2, 8 mg/kg for mice or 20 μmol/L for hepatocytes), as well as other pharmacological reagents. Our data showed that CO released from HO-1 induction by quercetin prevented ethanol-derived oxidative injury, which was abolished by CO scavenger hemoglobin. The protection was mimicked by CORM-2 with the attenuation of GSH depletion, SOD inactivation, MDA overproduction, and the leakage of AST, ALT or LDH in serum and culture medium induced by ethanol. Moreover, CORM-2 injection or incubation stimulated p38 phosphorylation and suppressed abnormal Tnfa and IL-6, accompanying the alleviation of redox imbalance induced by ethanol and aggravated by inflammatory factors. The protective role of CORM-2 was abolished by SB203580 (p38 inhibitor) but not by PD98059 (ERK inhibitor) or SP600125 (JNK inhibitor). Thus, HO-1 released CO prevented ethanol-elicited hepatic oxidative damage and inflammatory stress through activating p38 MAPK pathway, suggesting a potential therapeutic role of gaseous signal molecule on ALD induced by naturally occurring phytochemicals. - Highlights: • CO alleviated ethanol-derived liver oxidative and inflammatory stress in mice. • CO eased ethanol and inflammatory factor-induced oxidative damage in hepatocytes. • The p38 MAPK is a key signaling mechanism for the protective function of CO in ALD.

  2. Carbon monoxide alleviates ethanol-induced oxidative damage and inflammatory stress through activating p38 MAPK pathway

    International Nuclear Information System (INIS)

    Stress-inducible protein heme oxygenase-1(HO-1) is well-appreciative to counteract oxidative damage and inflammatory stress involving the pathogenesis of alcoholic liver diseases (ALD). The potential role and signaling pathways of HO-1 metabolite carbon monoxide (CO), however, still remained unclear. To explore the precise mechanisms, ethanol-dosed adult male Balb/c mice (5.0 g/kg.bw.) or ethanol-incubated primary rat hepatocytes (100 mmol/L) were pretreated by tricarbonyldichlororuthenium (II) dimmer (CORM-2, 8 mg/kg for mice or 20 μmol/L for hepatocytes), as well as other pharmacological reagents. Our data showed that CO released from HO-1 induction by quercetin prevented ethanol-derived oxidative injury, which was abolished by CO scavenger hemoglobin. The protection was mimicked by CORM-2 with the attenuation of GSH depletion, SOD inactivation, MDA overproduction, and the leakage of AST, ALT or LDH in serum and culture medium induced by ethanol. Moreover, CORM-2 injection or incubation stimulated p38 phosphorylation and suppressed abnormal Tnfa and IL-6, accompanying the alleviation of redox imbalance induced by ethanol and aggravated by inflammatory factors. The protective role of CORM-2 was abolished by SB203580 (p38 inhibitor) but not by PD98059 (ERK inhibitor) or SP600125 (JNK inhibitor). Thus, HO-1 released CO prevented ethanol-elicited hepatic oxidative damage and inflammatory stress through activating p38 MAPK pathway, suggesting a potential therapeutic role of gaseous signal molecule on ALD induced by naturally occurring phytochemicals. - Highlights: • CO alleviated ethanol-derived liver oxidative and inflammatory stress in mice. • CO eased ethanol and inflammatory factor-induced oxidative damage in hepatocytes. • The p38 MAPK is a key signaling mechanism for the protective function of CO in ALD

  3. Assessment of GHG emission reduction pathways in a society without carbon capture and nuclear technologies

    International Nuclear Information System (INIS)

    Every possible technology is pursued in order to achieve strict radiative forcing targets. Nuclear energy and Carbon Capture Storage (CCS) are regarded as important mitigation options. However, harsh criticisms have been directed at Japanese nuclear energy policy after the Fukushima nuclear accident, and the Japanese government will be required to re-evaluate not only its energy policy, but also the GHG reduction target itself. Like nuclear energy, CCS might not be regarded as a suitable option for GHG mitigation because its long-term safety has not been revealed. In this paper we analyze the energy policy response to an absence of nuclear energy and CCS, especially focusing on Japan, China and India. We find that the appropriate energy strategies against the unproven technologies differ between regions due to the uneven pre-existing nuclear energy, CCS potential and renewable energy potential, and the resource endowments and the levels of economic development. We also find that the strict mitigation target can be achieved even if nuclear energy and CCS are not available. In such a case, however, significant enhancement of renewable energy is needed, as well as particular fossil fuel alternatives based on region-specific availabilities and costs. - Highlights: ► We used a recursive-dynamic CGE model in which many advanced technologies are considered. ► We simulated radiative forcing targets assuming no availability of nuclear and CCS. ► The appropriate energy strategies against the unproven technologies differ between regions. ► The significant enhancement of renewable energy is needed, as well as particular fossil fuel alternatives.

  4. Metabolic flux determination using carbon 13 NMR. Application to normal and tumoral cells from central nervous system

    International Nuclear Information System (INIS)

    Carbon 13 NMR constitutes a potent tool to study cellular metabolism by the use of 13C enriched substrates. Analyzes of 13C NMR spectra recorded from acidic cell extracts lead to the evaluation of specific enrichment of various metabolites. On the other hand, the measure of homonuclear 13C-13C spin coupling gives information on the different isotopomers for a given molecule. Mathematical models were different isotopomers for a given molecule. Mathematical models were developed to interpret the NMR data in terms of metabolic fluxes through the metabolic network of interest. Various models established in our laboratory are presented. These models were applied to metabolic studies of cultured central nervous system cells as rat cerebellar astrocytes and granule cells, and the C6 glioma cell line. (authors). 17 refs., 3 figs., 2 tabs

  5. Dynamics of component carbon fluxes in a semi-arid Acacia woodland, central Australia

    Science.gov (United States)

    Cleverly, James; Boulain, Nicolas; Villalobos-Vega, Randol; Grant, Nicole; Faux, Ralph; Wood, Cameron; Cook, Peter G.; Yu, Qiang; Leigh, Andrea; Eamus, Derek

    2013-07-01

    Vast areas in the interior of Australia are exposed to regular but infrequent periods of heavy rainfall, interspersed with long periods at high temperatures, but little is known of the carbon budget of these remote areas or how they respond to extreme precipitation. In this study, we applied three methods to partition net ecosystem photosynthesis into gross primary production (GPP) and ecosystem respiration (Re) during two years of contrasting rainfall. The first year was wet (>250 mm above average rainfall), while little precipitation fell during the second year (>100 mm below average). During the first year of study, rates of GPP were large (793 g C m-2 yr-1) in this semi-arid Mulga (Acacia aneura) and grass savanna due to complementary photosynthetic responses by the canopy and C4 understorey to cycles of heavy rainfall. Patterns in GPP during the summer and autumn matched those in leaf area index (LAI), photosynthetic activity, and autotrophic respiration. During the dry year, small but positive photosynthetic uptake by Mulga contributed to the neutral carbon budget (GPP / Re = 1.06 ± 0.03). Small rates of photosynthesis by evergreen Mulga when dry were supported by storage of soil moisture above a relatively shallow hardpan. Little soil organic matter (1.1%) was available to support heterotrophic respiration (Rh) without input of fresh substrate. The two largest sources of Re in this study were autotrophic respiration by the seasonal understorey and Rh through decomposition of fresh organic matter supplied by the senescent understorey.

  6. Application of pathways analyses for site performance prediction for the Gas Centrifuge Enrichment Plant and Oak Ridge Central Waste Disposal Facility

    International Nuclear Information System (INIS)

    The suitability of the Gas Centrifuge Enrichment Plant and the Oak Ridge Central Waste Disposal Facility for shallow-land burial of low-level radioactive waste is evaluated using pathways analyses. The analyses rely on conservative scenarios to describe the generation and migration of contamination and the potential human exposure to the waste. Conceptual and numerical models are developed using data from comprehensive laboratory and field investigations and are used to simulate the long-term transport of contamination to man. Conservatism is built into the analyses when assumptions concerning future events have to be made or when uncertainties concerning site or waste characteristics exist. Maximum potential doses to man are calculated and compared to the appropriate standards. The sites are found to provide adequate buffer to persons outside the DOE reservations. Conclusions concerning site capacity and site acceptability are drawn. In reaching these conclusions, some consideration is given to the uncertainties and conservatisms involved in the analyses. Analytical methods to quantitatively assess the probability of future events to occur and the sensitivity of the results to data uncertainty may prove useful in relaxing some of the conservatism built into the analyses. The applicability of such methods to pathways analyses is briefly discussed. 18 refs., 9 figs

  7. Pathways and transformations of dissolved methane and dissolved inorganic carbon in Arctic tundra watersheds: Evidence from analysis of stable isotopes

    Science.gov (United States)

    Throckmorton, Heather M.; Heikoop, Jeffrey M.; Newman, Brent D.; Altmann, Garrett L.; Conrad, Mark S.; Muss, Jordan D.; Perkins, George B.; Smith, Lydia J.; Torn, Margaret S.; Wullschleger, Stan D.; Wilson, Cathy J.

    2015-11-01

    Arctic soils contain a large pool of terrestrial C and are of interest due to their potential for releasing significant carbon dioxide (CO2) and methane (CH4) to the atmosphere. Due to substantial landscape heterogeneity, predicting ecosystem-scale CH4 and CO2 production is challenging. This study assessed dissolved inorganic carbon (DIC = Σ (total) dissolved CO2) and CH4 in watershed drainages in Barrow, Alaska as critical convergent zones of regional geochemistry, substrates, and nutrients. In July and September of 2013, surface waters and saturated subsurface pore waters were collected from 17 drainages. Based on simultaneous DIC and CH4 cycling, we synthesized isotopic and geochemical methods to develop a subsurface CH4 and DIC balance by estimating mechanisms of CH4 and DIC production and transport pathways and oxidation of subsurface CH4. We observed a shift from acetoclastic (July) toward hydrogenotropic (September) methanogenesis at sites located toward the end of major freshwater drainages, adjacent to salty estuarine waters, suggesting an interesting landscape-scale effect on CH4 production mechanism. The majority of subsurface CH4 was transported upward by plant-mediated transport and ebullition, predominantly bypassing the potential for CH4 oxidation. Thus, surprisingly, CH4 oxidation only consumed approximately 2.51 ± 0.82% (July) and 0.79 ± 0.79% (September) of CH4 produced at the frost table, contributing to <0.1% of DIC production. DIC was primarily produced from respiration, with iron and organic matter serving as likely e- acceptors. This work highlights the importance of spatial and temporal variability of CH4 production at the watershed scale and suggests broad scale investigations are required to build better regional or pan-Arctic representations of CH4 and CO2 production.

  8. Integrated analysis reveals that STAT3 is central to the crosstalk between HER/ErbB receptor signaling pathways in human mammary epithelial cells

    Energy Technology Data Exchange (ETDEWEB)

    Gong, Chunhong; Zhang, Yi; Shankaran, Harish; Resat, Haluk

    2015-01-01

    Human epidermal growth factor receptors (HER, also known as ErbB) drive cellular proliferation, pro-survival and stress responses by activating several downstream kinases, in particular ERK, p38, JNK (SAPK), the PI3K/AKT, as well as various transcriptional regulators such as STAT3. When co-expressed, first three members of HER family (HER1-3) can form homo- and hetero-dimers. Based on the considerable evidence which suggest that every receptor dimer activates intracellular signaling pathways differentially, we hypothesized that the HER dimerization pattern is a better predictor of downstream signaling than the total receptor activation levels. We validated our hypothesis using a combination of model-based analysis to quantify the HER dimerization patterns and multi-factorial experiments where HER dimerization patterns and signaling crosstalk were rationally perturbed. We have measured the activation of HER1-3 receptors and of the sentinel signaling proteins ERK, AKT, p38, JNK, STAT3 as a function of time in a panel of human mammary epithelial (HME) cells expressing different levels of HER1-3 stimulated with various ligand combinations. Our analysis using multiple ways of clustering the activation data has confirmed that the HER receptor dimer is a better predictor of the signaling through p38, ERK and AKT pathways than the total HER receptor expression and activation levels. Targeted inhibition studies to identify the causal effects allowed us to obtain a consensus regulatory interaction model, which revealed that STAT3 occupies a central role in the crosstalk between the studied pathways.

  9. Diurnal variations in pathways of photosynthetic carbon fixation in a freshwater cyanobacterium

    Science.gov (United States)

    Labiosa, R. G.; Arrigo, K. R.; Grossman, A.; Reddy, T. E.; Shrager, J.

    2003-04-01

    Understanding phytoplankton photosynthesis is critical to several fields including ecology and global biogeochemistry. The efficiency with which phytoplankton fix carbon depends upon the ambient light field, which is in turn dependent upon sun angle and the depth of mixing in the water column. In this pilot project, Synechocystis PCC 6803 was chosen as a model organism with which to study the molecular and physiological responses of phytoplankton to diurnal changes in light levels. Advantages of using this organism include that its genome has been sequenced, allowing the use of microarray technology, that it is readily grown as single colonies on plates and in liquid cultures, and that it is easy to manipulate genetically (generate and complement mutants). Axenic cultures of Synechocystis were grown under precisely controlled conditions in a "cyclodyne", a chemostat in which the light intensity cycles to mimic diurnal changes in light level, where the light consisted of sinusoidal daylight (400 μ mol photons m-2 s-1 at noon) followed by 12 hours of darkness for several weeks. After one week to allow the cells to acclimate to the light conditions, the cultures were sampled and extracted for RNA analysis every two hours over the course of several days. At these time points, absorption spectra, light scattering and chlorophyll a concentrations were determined. Initial results from Northern Blot hybridizations (examining RNA levels for individual genes) indicate that, the transcripts encoding photosynthetic proteins (i.e., PsbA2, PsaA and CpcB, in photosystem II, photosystem I, and phycobilisomes, respectively) are highest during the light. Initial results show that in the middle of the night, the psbA2 transcripts are 2-fold less while the psaA and cpcB are greater than 4-fold less than in the middle of the day. For the most part, the transcripts encoding photosynthetic proteins track the light cycle, although with different trends at daybreak and after night falls

  10. Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, Central Great Barrier Reef

    Directory of Open Access Journals (Sweden)

    R. Albright

    2013-05-01

    Full Text Available Ocean acidification is projected to shift coral reefs from a state of net accretion to one of net dissolution this century. Presently, our ability to predict global-scale changes to coral reef calcification is limited by insufficient data relating seawater carbonate chemistry parameters to in situ rates of reef calcification. Here, we investigate natural trends in carbonate chemistry of the Davies Reef flat in the central Great Barrier Reef on diel and seasonal timescales and relate these trends to benthic carbon fluxes by quantifying net ecosystem calcification (nec and net community production (ncp. Results show that seawater carbonate chemistry of the Davies Reef flat is highly variable over both diel and seasonal timescales. pH (total scale ranged from 7.92 to 8.17, pCO2 ranged from 272 to 542 μatm, and aragonite saturation state (Ωarag ranged from 2.9 to 4.1. Diel cycles in carbonate chemistry were primarily driven by ncp, and warming explained 35% and 47% of the seasonal shifts in pCO2 and pH, respectively. Daytime ncp averaged 36 ± 19 mmol C m−2 h−1 in summer and 33 ± 13 mmol C m−2 h−1 in winter; nighttime ncp averaged −22 ± 20 and −7 ± 6 mmol C m−2 h−1 in summer and winter, respectively. Daytime nec averaged 11 ± 4 mmol CaCO3 m−2 h−1 in summer and 8 ± 3 mmol CaCO3 m−2 h−1 in winter, whereas nighttime nec averaged 2 ± 4 mmol and −1 ± 3 mmol CaCO3 m−2 h−1 in summer and winter, respectively. Net ecosystem calcification was positively correlated with Ωarag for both seasons. Linear correlations of nec and Ωarag indicate that the Davies Reef flat may transition from a state of net calcification to net dissolution at Ωarag values of 3.4 in summer and 3.2 in winter. Diel trends in Ωarag indicate that the reef flat is currently below this calcification threshold 29.6% of the time in summer and 14.1% of the time in winter.

  11. soil carbon pools within oak forest is endangered by global climate change in central mexico

    Science.gov (United States)

    García-Oliva, Felipe; Merino, Agustín; González-Rodriguez, Antonio; Chávez-Vergara, Bruno; Tapia-Torres, Yunuen; Oyama, Ken

    2016-04-01

    Forest soil represents the main C pool in terrestrial ecosystems. In particular, temperate forest ecosystems play an important role in the C budget among tropical countries, such as Mexico. For example, the temperate forest ecosystem contains higher C contents on average (295 Mg C ha-1) than the soil C associated with other ecosystems in Mexico (between 56 to 287 Mg C ha-1). At a regional scale, oak forest has the highest C content (460 Mg C ha-1) among the forest ecosystem in Michoacán State at Central Mexico. At the local scale, the soil C content is strongly affected by the composition of organic matter produced by the plant species. The oak species are very diverse in Mexico, distributed within two sections: Quercus sensu stricto and Lobatae. The oak species from Quercus s.s. section produced litterfall with lower concentrations of recalcitrant and thermostable compounds than oak species from Lobatae section, therefore the soil under the former species had higher microbial activity and nutrient availability than the soil under the later species. However, the forest fragment with higher amount of oak species from Quercus s.s. section increases the amount of soil C contents. Unfortunately, Quercus species distribution models for the central western region of Mexico predict a decrease of distribution area of the majority of oak species by the year 2080, as a consequence of higher temperatures and lower precipitation expected under climate change scenarios. Additionally to these scenarios, the remnant oak forest fragments suffer strong degradation due to uncontrolled wood extraction and deforestation. For this reason, the conservation of oak forest fragments is a priority to mitigate the greenhouse gases emission to the atmosphere. In order to enhance the protection of these forest fragments it is required that the society identify the ecosystem services that are provided by these forest fragments.

  12. Sedimentology of a Mid-Late Ordovician carbonate mud-mound complex from the Kathmandu nappe in Central Nepal

    Science.gov (United States)

    Pas, Damien; Da Silva, Anne-Christine; Dhital, Megh Raj; Boulvain, Frédéric

    2011-08-01

    This sedimentological study of the Godavari quarry is the first relating to the Palaeozoic Tethyan sedimentary rocks of the Katmandu nappe (Central Nepal). Sedimentological analyses led to the identification of six microfacies belonging to a large carbonate mud-mound complex, which can be divided into mound, flank and off-mound main depositional settings. Identification of two dasycladaceans ( Dasyporell a cf. silurica ( Stolley, 1893) and Vermiporella sp.) in the mound facies gives a Mid-Late Ordovician age to this newly discovered Godavari carbonate mud-mound, which makes this mound one of the oldest ever described in the Asian continent. The mound microfacies are characterized by a high micritic content, the presence of stromatactis and the prevalence of red coloured sediments (the red pigmentation probably being related to organic precipitation of iron). The flank microfacies are characterized by a higher crinoid and argillaceous content and the presence of bio- and lithoclasts concentrated in argillaceous lenses. Finally, the off-mound microfacies show very few bioclasts and a high argillaceous content. Palaeoenvionmental interpretation of microfacies, in terms of bathymetry, leads us to infer that the Godavari mud-mound started to grow in a deep environment setting below the photic and wave action zones and that it evolved to occupy a location below the fair weather wave base. Cementation of cavities within the mound facies underlines a typical transition from a marine to a burial diagenetic environment characterized by: (1) a radiaxial non luminescent feroan calcite cement (marine) showing a bright orange luminescent band in its middle part; (2) a bright zoned orange fringe of automorphic feroan calcite (meteoric phreatic); (3) a dull orange xenomorphic feroan calcite cement in the centre of cavities (burial) and (4) a saddle dolomite within the centre of larger cavities. The faunal assemblage (diversity and relative proportion) of the Godavari mound facies

  13. Fluxes of nitrous oxide and carbon dioxide over four potential biofuel crops in Central Illinois

    Science.gov (United States)

    Zeri, M.; Hickman, G. C.; Bernacchi, C.

    2009-12-01

    Nitrous oxide (N2O) and carbon dioxide (CO2) are important greenhouse gases that contribute to global climate change. Agriculture is a significant source of N2O to the atmosphere due to the use of nitrogen-based fertilizers. Fluxes of N2O and CO2 are measured using the flux-gradient technique over four different crops at the Energy Farm, a University of Illinois research facility in Urbana, Illinois. Measurements started in June of 2009 and are part of a project that aims to assess the impacts of potential biofuel crops on the carbon, water and nitrogen cycles. The species chosen are Maize (Zea mays), Miscanthus (Miscanthus x giganteus), Switchgrass (Panicum virgatum) and Prairie (a mix of several native species). The choice of species was based on their potential for the production of second-generation biofuels, i.e., fuels derived from the decomposition of the cellulosic material in the plant biomass. The use of corn residue for cellulosic biofuels might impact the carbon cycle through the reduction of soil organic content. Miscanthus is a perennial grass with great potential for biomass production. However, the total water used during the growing season and its water use efficiency might impose limits on the regions where this biofuel crop can be sustainably planted on a large scale. Switchgrass and the prairie species are less productive but might be suited for being well adapted and easy to establish. This study is the first side-by-side comparison of fluxes of N2O for these agro-ecosystems. The measurements are performed at micrometeorological towers placed at the center of 4 ha plots. The air is sampled at two heights over the vegetation and is analyzed in a tunable diode laser (TDL) installed nearby. A valve system cycles the TDL measurements trough all the intakes in the plots. The fluxes are calculated using the flux-gradient method, which requires the knowledge of the scalar vertical gradient as well as of the friction velocity (u*) and the Monin

  14. Microfossils from silicified stromatolitic carbonates of the Upper Proterozoic Limestone-Dolomite 'Series', central East Greenland

    Science.gov (United States)

    Green, J. W.; Knoll, A. H.; Swett, K.

    1989-01-01

    Silicified flake conglomerates and in situ stratiform stromatolites of the Upper Proterozoic (c. 700-800 Ma) Limestone-Dolomite 'Series', central East Greenland, contain well preserved microfossils. Five stratigraphic horizons within the 1200 m succession contain microbial mat assemblages, providing a broad palaeontological representation of late Proterozoic peritidal mat communities. Comparison of assemblages demonstrates that the taxonomy and diversity of mat builder, dweller, and allochthonous populations all vary considerably within and among horizons. The primary mat builder in most assemblages is Siphonophycus inornatum, a sheath-forming prokaryote of probable but not unequivocally established cyanobacterial affinities. An unusual low diversity unit in Bed 17 is dominated by a different builder, Tenuofilum septatum, while a thin cryptalgal horizon in Bed 18 is built almost exclusively by Siphonophycus kestron. Although variable taphonomic histories contribute to observed assemblage variation, most differences within and among horizons appear to reflect the differential success or failure of individual microbial populations in colonizing different tidal flat microenvironments. Twenty-two taxa are recognized, of which two are described as new: Myxococcoides stragulescens n.sp. and Scissilisphaera gradata n. sp.

  15. Effect of direct seeding mulch-based systems on soil carbon storage and macrofauna in central Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Blanchart, E.; Bernoux, M.; Sarda, X.; Feller, C. [Institut de Recherche pour le Developpement, Montpellier (France); Siqueira Neto, M.; Cerri, C.C.; Piccolo, M. [CENA-USP, Piracicaba (Brazil). Lab. Biogeoquimica Ambiental; Douzet, J.M. [CIRAD, Antsirabe (Madagascar); Scopel, E. [CIRAD-CA, Planaltina (Brazil)

    2007-07-01

    Soils represent a large carbon pool, approximately 1500 Gt, equivalent to almost three times the quantity stored in terrestrial biomass and twice the amount stored in the atmosphere. The management and maintenance of soil carbon is therefore an integral part of the global carbon cycle. Land use change, inappropriate agricultural practices and climate change can all lead to a net release of C from soils to the atmosphere, exacerbating the problems of greenhouse gas release. Any modification of land-use or land management can induce variations in soil carbon stocks, even in agricultural systems that are perceived to be in a steady state. These modifications also alter soil macrofauna that is known to affect soil carbon dynamics. Direct seeding Mulch-based Cropping (DMC) systems with two crops per year without soil tillage have widely been adopted over the last 10 to 15 years in the Cerrado (central region) of Brazil. They are replacing the traditional soybean monocropping with fallow under conventional tillage (CT). Th e objective of this study was to examine how DMC practices affect soil organic carbon (SOC) dynamics and macrofauna (Rio Verde, Goias State). The approach was to determine soil C stocks and macrofauna in five fi elds under DMC aged 1, 5, 7, 11 and 13 years. In order to compare DMC systems with the native system of the region and previous land-use, a situation under native Cerrado (tree-savanna like vegetation) and a field conducted traditionally (CT) were also studied. Soil C stocks were calculated for the 0-10 and 0-40 cm soil depth and also for the fi rst 400 kg m{sup -2} of soil to compare the same amount of soil and to suppress the potential artefact of soil compaction when sample is based on fix layer depth. Soil macrofauna was hand-sorted from soil monoliths (30 cm depth, TSBF method). In our study, the annual rate of carbon storage was equal to ca. 1.6 MgC ha{sup -1}, which is in the range of values measured for DMC in different areas of Brazil

  16. DISTRIBUTION OF ORGANIC CARBON IN DIFFERENT SOIL FRACTIONS IN ECOSYSTEMS OF CENTRAL AMAZONIA

    Directory of Open Access Journals (Sweden)

    Jean Dalmo de Oliveira Marques

    2015-02-01

    Full Text Available Organic matter plays an important role in many soil properties, and for that reason it is necessary to identify management systems which maintain or increase its concentrations. The aim of the present study was to determine the quality and quantity of organic C in different compartments of the soil fraction in different Amazonian ecosystems. The soil organic matter (FSOM was fractionated and soil C stocks were estimated in primary forest (PF, pasture (P, secondary succession (SS and an agroforestry system (AFS. Samples were collected at the depths 0-5, 5-10, 10-20, 20-40, 40-60, 60-80, 80-100, 100-160, and 160-200 cm. Densimetric and particle size analysis methods were used for FSOM, obtaining the following fractions: FLF (free light fraction, IALF (intra-aggregate light fraction, F-sand (sand fraction, F-clay (clay fraction and F-silt (silt fraction. The 0-5 cm layer contains 60 % of soil C, which is associated with the FLF. The F-clay was responsible for 70 % of C retained in the 0-200 cm depth. There was a 12.7 g kg-1 C gain in the FLF from PF to SS, and a 4.4 g kg-1 C gain from PF to AFS, showing that SS and AFS areas recover soil organic C, constituting feasible C-recovery alternatives for degraded and intensively farmed soils in Amazonia. The greatest total stocks of carbon in soil fractions were, in decreasing order: (101.3 Mg ha-1 of C - AFS > (98.4 Mg ha-1 of C - FP > (92.9 Mg ha-1 of C - SS > (64.0 Mg ha-1 of C - P. The forms of land use in the Amazon influence C distribution in soil fractions, resulting in short- or long-term changes.

  17. Export of dissolved organic carbon from the Penobscot River basin in north-central Maine

    Science.gov (United States)

    Huntington, Thomas G.; Aiken, George R.

    2013-01-01

    Dissolved organic carbon (DOC) flux from the Penobscot River and its major tributaries in Maine was determined using continuous discharge measurements, discrete water sampling, and the LOADEST regression software. The average daily flux during 2004–2007 was 71 kg C ha−1 yr−1 (392 Mt C d−1), an amount larger than measured in most northern temperate and boreal rivers. Distinct seasonal variation was observed in the relation between concentration and discharge (C–Q). During June through December (summer/fall), there was a relatively steep positive C–Q relation where concentration increased by a factor of 2–3 over the approximately 20-fold range of observed stream discharge for the Penobscot River near Eddington, Maine. In contrast, during January through May (winter/spring), DOC concentration did not increase with increasing discharge. In addition, we observed a major shift in the C–Q between 2004–2005 and 2006–2007, apparently resulting from unprecedented rainfall, runoff, and soil flushing beginning in late fall 2005. The relative contribution to the total Penobscot River basin DOC flux from each tributary varied dramatically by season, reflecting the role of large regulated reservoirs in certain basins. DOC concentration and flux per unit watershed area were highest in tributaries containing the largest areas in palustrine wetlands. Tributary DOC concentration and flux was positively correlated to percentage wetland area. Climatic or environmental changes that influence the magnitude or timing of river discharge or the abundance of wetlands will likely affect the export of DOC to the near-coastal ocean.

  18. Flocculation of Allochthonous Dissolved Organic Matter – a Significant Pathway of Sedimentation and Carbon Burial in Lakes

    OpenAIRE

    von Wachenfeldt, Eddie

    2008-01-01

    Inland waters receive substantial amounts of organic carbon from adjacent watersheds. Only about half of the carbon exported from inland waters reaches the oceans, while the remainder is lost en route. This thesis identifies flocculation as an important and significant fate of carbon in the boreal landscape. Flocculation reallocates organic carbon from the dissolved state into particles which are prone to settle. Thus, flocculation relocates organic carbon from the water column to the sedimen...

  19. Analysis of sensitive CO2 pathways and genes related to carbon uptake and accumulation in Chlamydomonas reinhardtii through genomic scale modeling and experimental validation

    Directory of Open Access Journals (Sweden)

    Flavia Vischi Winck

    2016-02-01

    Full Text Available The development of microalgae sustainable applications needs better understanding of microalgae biology. Moreover, how cells coordinate their metabolism towards biomass accumulation is not fully understood. In this present study, flux balance analysis (FBA was performed to identify sensitive metabolic pathways of Chlamydomonas reinhardtii under varied CO2 inputs. The metabolic network model of Chlamydomonas was updated based on the genome annotation data and sensitivity analysis revealed CO2 sensitive reactions. Biological experiments were performed with cells cultivated at 0.04% (air, 2.5%, 5%, 8% and 10% CO2 concentration under controlled conditions and cell growth profiles and biomass content were measured. Pigments, lipids, proteins and starch were further quantified for the reference low (0.04% and high (10% CO2 conditions. The expression level of candidate genes of sensitive reactions was measured and validated by quantitative real time qPCR. The sensitive analysis revealed mitochondrial compartment as the major affected by high CO2 levels and glycolysis/gluconeogenesis, glyoxylate and dicarboxylate metabolism among the affected metabolic pathways. Genes coding for glycerate kinase (GLYK, glycine cleavage system, H-protein (GCSH, NAD-dependent malate dehydrogenase (MDH3, low-CO2 inducible protein A (LCIA, carbonic anhydrase 5 (CAH5, E1 component, alpha subunit (PDC3, dual function alcohol dehydrogenase/acetaldehyde dehydrogenase (ADH1 and phosphoglucomutase (GPM2, were defined, among other genes, as sensitive nodes in the metabolic network simulations. These genes were experimentally responsive to the changes in the carbon fluxes in the system. We performed metabolomics analysis using mass spectrometry validating the modulation of carbon dioxide responsive pathways and metabolites. The changes on CO2 levels mostly affected the metabolism of amino acids found in the photorespiration pathway. Our updated metabolic network was compared to

  20. Analysis of Sensitive CO2 Pathways and Genes Related to Carbon Uptake and Accumulation in Chlamydomonas reinhardtii through Genomic Scale Modeling and Experimental Validation.

    Science.gov (United States)

    Winck, Flavia V; Melo, David O Páez; Riaño-Pachón, Diego M; Martins, Marina C M; Caldana, Camila; Barrios, Andrés F González

    2016-01-01

    The development of microalgae sustainable applications needs better understanding of microalgae biology. Moreover, how cells coordinate their metabolism toward biomass accumulation is not fully understood. In this present study, flux balance analysis (FBA) was performed to identify sensitive metabolic pathways of Chlamydomonas reinhardtii under varied CO2 inputs. The metabolic network model of Chlamydomonas was updated based on the genome annotation data and sensitivity analysis revealed CO2 sensitive reactions. Biological experiments were performed with cells cultivated at 0.04% (air), 2.5, 5, 8, and 10% CO2 concentration under controlled conditions and cell growth profiles and biomass content were measured. Pigments, lipids, proteins, and starch were further quantified for the reference low (0.04%) and high (10%) CO2 conditions. The expression level of candidate genes of sensitive reactions was measured and validated by quantitative real time PCR. The sensitive analysis revealed mitochondrial compartment as the major affected by changes on the CO2 concentrations and glycolysis/gluconeogenesis, glyoxylate, and dicarboxylate metabolism among the affected metabolic pathways. Genes coding for glycerate kinase (GLYK), glycine cleavage system, H-protein (GCSH), NAD-dependent malate dehydrogenase (MDH3), low-CO2 inducible protein A (LCIA), carbonic anhydrase 5 (CAH5), E1 component, alpha subunit (PDC3), dual function alcohol dehydrogenase/acetaldehyde dehydrogenase (ADH1), and phosphoglucomutase (GPM2), were defined, among other genes, as sensitive nodes in the metabolic network simulations. These genes were experimentally responsive to the changes in the carbon fluxes in the system. We performed metabolomics analysis using mass spectrometry validating the modulation of carbon dioxide responsive pathways and metabolites. The changes on CO2 levels mostly affected the metabolism of amino acids found in the photorespiration pathway. Our updated metabolic network was

  1. Carbon sequestration and water use of a young hybrid poplar plantation in north-central Alberta

    International Nuclear Information System (INIS)

    Hybrid poplar (HP) is an important fast-growing crop with the potential to provide a reliable supply of biomass for the pulp and bioenergy industries while also sequestering carbon (C) in the soil. We used the eddy-covariance technique to measure CO2, water vapor and sensible heat fluxes above a three-year-old HP plantation on high productivity land near St Albert, Alberta. Measurements showed that the annual C balance of the plantation shifted from a C source of about 1.54 Mg C ha−1 y−1 in the 2nd year (2010) to a C sink of 0.80 Mg C ha−1 y−1 in the 3rd year (2011). Water use or evapotranspiration (E) for 1 June – 31 October increased from 272 mm in 2010 to 321 mm in 2011, and exceeded the respective values of total precipitation of 251 mm and 298 mm for the same period. Annual E in 2010 of 364 mm was less than annual precipitation of 398 mm. In 2011, annual E (442 mm) exceeded annual P (411 mm) by 31 mm; it also exceeded the annual plantation water use Ewb, estimated using a water balance method assuming no drainage from the root zone, by 40 mm. However, both courses of cumulative E and Ewb closely followed cumulative P. Monthly E increased with increasing net radiation and gross primary productivity. Growing season mean albedo increased from 0.16 in 2010 to 0.21 in 2011 and was consistent with the increase in broadband NDVI. Values of albedo during winter months (November–April) exceeded 0.80. The results suggested that as the plantation grows, growing season albedo, annual C sequestration, and annual water use will increase with the possibility that the latter may exceed annual precipitation. This emphasizes the need to study the long-term sustainability of HP plantations in relation to annual P and its temporal distribution, especially when HP plantations will likely be established on large contiguous areas to supply biomass feedstock for the expanding pulp and bioenergy industries in Western Canada. -- Highlights: •The plantation was a C source

  2. A Dialogue between the Sirène Pathway in Synergids and the Fertilization Independent Seed Pathway in the Central Cell Controls Male Gamete Release during Double Fertilization in Arabidopsis

    Institute of Scientific and Technical Information of China (English)

    Nicolas Rotman; Mathieu Gourgues; Anne-Elisabeth Guitton; Jean-Emmanuel Faure; Frédéric Berger

    2008-01-01

    Angiosperms sexual reproduction involves interactions between the two female gametes in the embryo sac and the two male gametes released by the pollen tube.The two synergids of the embryo sac express the FERONIA/SIRENE receptor-like kinase,which controls the discharge of the two sperm cells from the pollen tube.FER/SRN may respond to a ligand from the pollen tube.Alternatively,the interaction between FER/SRN and a ligand from the embryo sac may lead to a state of competence of the synergids allowing pollen tube discharge.Here,we report the new mutant scylla(syl)impaired in the controI of pollen tube discharge.This mutant also produces autonomous endosperm development in absence of tertilization-a trait associated with the FERTILIZATION INDEPENDENT SEED (FIS) mutant class.This led us to identify autonomous endosperm in srn mutants and to demonstrate synergistic interactions between srn and the fis mutants.In addition,the fis mutants display defects in pollen tube discharge as in srn and syl mutants,confirming the interaction between the two pathways.Our findings suggest that pollen tube discharge is controlled by an interaction between the synergids expressing SRN/FER and the central cell expressing FIS genes.

  3. Robust Control of PEP Formation Rate in the Carbon Fixation Pathway of C4 Plants by a Bi-functional Enzyme

    Directory of Open Access Journals (Sweden)

    Hart Yuval

    2011-10-01

    Full Text Available Abstract Background C4 plants such as corn and sugarcane assimilate atmospheric CO2 into biomass by means of the C4 carbon fixation pathway. We asked how PEP formation rate, a key step in the carbon fixation pathway, might work at a precise rate, regulated by light, despite fluctuations in substrate and enzyme levels constituting and regulating this process. Results We present a putative mechanism for robustness in C4 carbon fixation, involving a key enzyme in the pathway, pyruvate orthophosphate dikinase (PPDK, which is regulated by a bifunctional enzyme, Regulatory Protein (RP. The robust mechanism is based on avidity of the bifunctional enzyme RP to its multimeric substrate PPDK, and on a product-inhibition feedback loop that couples the system output to the activity of the bifunctional regulator. The model provides an explanation for several unusual biochemical characteristics of the system and predicts that the system's output, phosphoenolpyruvate (PEP formation rate, is insensitive to fluctuations in enzyme levels (PPDK and RP, substrate levels (ATP and pyruvate and the catalytic rate of PPDK, while remaining sensitive to the system's input (light levels. Conclusions The presented PPDK mechanism is a new way to achieve robustness using product inhibition as a feedback loop on a bifunctional regulatory enzyme. This mechanism exhibits robustness to protein and metabolite levels as well as to catalytic rate changes. At the same time, the output of the system remains tuned to input levels.

  4. Dissolved CO2 in small catchment streams of eastern Amazonia: A minor pathway of terrestrial carbon loss

    Science.gov (United States)

    Davidson, Eric A.; Figueiredo, Ricardo O.; Markewitz, Daniel; Aufdenkampe, Anthony K.

    2010-12-01

    Production of carbon dioxide (CO2) in soils can lead to supersaturation of dissolved free CO2 (pCO2) in groundwater, which later evades to the atmosphere as groundwater enters streams and rivers. This process could be a significant pathway for return of terrestrially fixed C to the atmosphere. We measured pCO2 monthly over two years at multiple stations along three streams from their headwaters in remnant mature forests through multiple land covers in Pará, Brazil. The pCO2 averaged 19,000 μatm in headwaters and decreased to about 4,500 μatm downstream. Similar values were measured in headwaters of two small pristine mature forest catchments. Two approaches were used to estimate groundwater pCO2 evasion: assuming that headwater pCO2 measurements reflected incoming groundwater pCO2 or that all entering stream water was in equilibrium with previously measured deep soil CO2. With these assumptions, losses from the terrestrial environment through aquatic evasion of pCO2 would be 0.02-0.15 Mg C ha-1 of land area yr-1, which is about 2-3 orders of magnitude lower than annual estimates of soil respiration and net primary productivity. However, downstream pCO2 values that appear to be in quasi-steady state indicate contributions from other C sources, such as aquatic primary production, soil erosion, dissolved organic matter, or litter inputs from streamside vegetation. Hence, lateral pCO2 loss from groundwater to streams is minor for most of the terrestrial ecosystems of this region, although C loss to streams could be significant for net terrestrial budgets in riparian ecosystems or areas experiencing erosion.

  5. Downward lee wave radiation from tropical instability waves in the central equatorial Pacific Ocean: A possible energy pathway to turbulent mixing

    Science.gov (United States)

    Tanaka, Yuki; Hibiya, Toshiyuki; Sasaki, Hideharu

    2015-11-01

    Turbulent mixing in the equatorial Pacific Ocean is an important process that controls diapycnal heat transport and hence affects the air-sea interactions and global climate. It is recently shown that, in the eastern equatorial Pacific, strong mixing is induced in the thermocline by enhanced vertical shear associated with tropical instability waves (TIWs), which propagate westward along the equator at a speed of ˜0.5 m s-1 with a wavelength of ˜1000 km. In this study, using a high-resolution ocean general circulation model, we show that the TIWs can play an important role in inducing turbulent mixing in the thermocline also in the central equatorial Pacific, although the thermocline is too deep to be directly affected by the vertical shear of the TIWs. The front of the TIW is clearly manifested as a narrow strip of strong convergence of horizontal surface flow, from which area downward and westward propagating internal waves are intermittently emanated. These internal waves can be interpreted as lee waves generated by the surface-flow convergence zone, which acts like an inverted obstacle moving along the stratified ocean surface by inducing downward flow. The associated downward energy flux below the surface mixed layer increases as the TIW structure becomes deeper toward the central equatorial Pacific, so that the energy pathway to turbulent mixing in the thermocline can be created. The downward energy flux integrated over the entire equatorial Pacific and averaged during January 2011 amounts to ˜8.1 GW, occupying a significant fraction of the energy input to the TIWs.

  6. {sup 210}Pb dating of sediments from the central and northern Adriatic Sea: deposition and preservation of sedimentary organic carbon

    Energy Technology Data Exchange (ETDEWEB)

    Hamilton, T. F., LLNL

    1998-04-01

    Lead-210 ({sup 21O}Pb) and organic C depth distribution profiles in sediments from the northern and central Adriatic Sea were measured as part of the EEC funded project on Eutrophic Limits of the Northern Adriatic (ELNA). {sup 210}Pb derived mass-accumulation rates decrease southward from between 0.15 and 0.2 g cm{sup -2}y{sup -1} close to the Po River outflow (> 24 m, water depth) to less than 0.04 g cm{sup -2}y{sup -1} in the Jabuka Pit (246 m, water depth) in the central Adriatic Sea. The mass- accumulation rates obtained in the Jabuka Pit correspond to mean sedimentation rates of about 0.03 cm y{sup -1} (ref. porosity = 0.5) and fall between 5 to 20 times lower than rates found for north Adriatic shelf cores. Estimated sedimentation rates are considered as upper limits because of the possible effects of bioturbation and physical disturbance on the {sup 21O}Pb sedimentary record but are consistent with data from previous work. Rates of sediment accumulation and carbon burial appear to be strongly influenced by the transport of fluvial materials from land and transport of fine-grained particles. First-order estimates of organic C burial rates into surface sediment ranged from 1 to 0.028 mMol cm{sup -2}y{sup -1} between the Po delta and the Jabuka Pit regions, respectively. We estimate that a maximum of 50% of organic C preserved in surface sediment may be derived from biological production in the overlying water column.

  7. The role of carbon from recycled sediments in the origin of ultrapotassic igneous rocks in the Central Mediterranean

    Science.gov (United States)

    Conticelli, Sandro; Avanzinelli, Riccardo; Ammannati, Edoardo; Casalini, Martina

    2015-09-01

    The Central Mediterranean region is one of the most important areas on Earth for studying subduction-related potassic and ultrapotassic magmatism, derived from partial melting of the metasomatised lithospheric mantle wedge. In this region, leucite-free (i.e., lamproite) and leucite-bearing (i.e., kamafugite, leucitite, and plagioleucitite) ultrapotassic rocks closely occur, in a time-related progression, linked to the evolution of both the mantle source and the regional tectonic regime. Time- and space-related magmatism migration followed the roll-back of the subducting slab and the anticlockwise drift of the Italian Peninsula. Leucite-free silica-rich lamproites are restricted to the early stage of magmatism and are associated with ultrapotassic shoshonites and high-K calc-alkaline volcanic rocks. Leucite-bearing (i.e., Roman Province) rocks are erupted consistently later than lamproite-like and associated shoshonitic rocks, with post-leucititic volcanism occurring in the late stage of volcanic activity with eruption of alkali-basaltic to latitic and trachytic rocks, often after major caldera-forming events. Present-day ultrapotassic volcanism is restricted to the Neapolitan area. Central Mediterranean potassic and ultrapotassic rocks are extremely enriched in incompatible trace elements with variable fractionation of Ta, Nb, and Ti in comparison to Th and large ion lithophile elements (LILE). They are also variably enriched in radiogenic Sr and Pb and unradiogenic Nd. The main geochemical and isotopic signatures are consistent with sediment recycling within the mantle wedge via subduction. A twofold metasomatism, induced by the recycle of pelitic sediments and dehydration of lawsonite-bearing schists generates the early metasomatic events that enriched the mantle wedge from which leucite-free ultrapotassic rocks (i.e., lamproite) were generated. Recycling of carbonate-rich pelites played an important role in the shift to silica-undersaturated ultrapotassic rocks

  8. Variation and control of soil organic carbon and other nutrients in permafrost regions on central Qinghai-Tibetan Plateau

    International Nuclear Information System (INIS)

    The variation and control of soil organic carbon (SOC) and other nutrients in permafrost regions are critical for studying the carbon cycle and its potential feedbacks to climate change; however, they are poorly understood. Soil nutrients samples at depths of 0–10, 10–20, 20–30, and 30–40 cm, were sampled eight times in 2009 in alpine swamp meadow, alpine meadow and alpine steppe in permafrost regions of the central Qinghai-Tibetan Plateau. SOC and total nitrogen (TN) in the alpine swamp meadow and meadow decreased with soil depth, whereas the highest SOC content in the alpine steppe was found at depths of 20–30 cm. The vertical profiles of total and available phosphorus (P) and potassium (K) were relatively uniform for all the three grassland types. Correlation and linear regression analyses showed that soil moisture (SM) was the most important parameter for the vertical variation of SOC and other soil nutrients, and that belowground biomass (BGB) was the main source of SOC and TN. The spatial variations (including seasonal variation) of SOC and TN at plot scale were large. The relative deviation of SOC ranged from 7.18 to 41.50 in the alpine swamp meadow, from 2.88 to 35.91 in the alpine meadow, and from 9.33 to 68.38 in the alpine steppe. The spatial variations in the other soil nutrients varied among different grassland types. The most important factors for spatial variations (including seasonal variation) of SOC, TN, total P, available P, and both total and available K were: SM, SM and temperature, SM, air temperature, and SM and BGB, respectively. The large variation in the three grassland types implies that spatial variation at plot scale should be considered when estimating SOC storage and its dynamics. (letter)

  9. Decomposition, nitrogen and carbon mineralization from food and cover crop residues in the central plateau of Haiti.

    Science.gov (United States)

    Lynch, M J; Mulvaney, M J; Hodges, S C; Thompson, T L; Thomason, W E

    2016-01-01

    Cover crops are a major focus of conservation agriculture efforts because they can provide soil cover and increase nutrient availability after their mineralization in cropping systems. To evaluate the effect of residue type and placement on rate of decomposition and carbon (C) and nitrogen (N) mineralization, residues from two food crops, maize (Zea mays L.) and common bean (Phaseolus vulgaris L.), and two promising cover crops, sunn hemp (Crotalaria juncea L.) and sorghum sudangrass (Sorghum bicolor [L.] Moench x S. bicolor var. Sudanese [Piper] Stapf) were used in a litterbag study in the Central Plateau region of Haiti from May to September, 2013. Residues were placed in litterbags at a rate equivalent to 3.25 Mg residue ha(-1) either on the soil surface or buried at 15 cm to represent a tilled and no-tillage system, respectively. Initial C:N ratios were: maize > common bean > sorghum sudangrass > sunn hemp. Highest residue mass loss rates and C and N mineralization generally occurred in the reverse order. Overall, surface-placed residues decomposed more slowly with 40 and 17 % of initial residue mass of surface and buried residues, respectively, remaining at 112 days. Carbon and N mineralization was higher when residues were buried. Net N mineralization of buried residues was 0.12, 0.07, 0.06, and 0.03 g N g residue(-1) for sunn hemp, sorghum sudangrass, maize, and common bean, respectively over 112 days. To achieve the goal of increasing nutrient supply while maintaining year-round cover, a combination of grass and legume cover crops may be required with benefits increasing over multiple seasons. PMID:27429883

  10. Drought effects on soil carbon dioxide production in two ecosystems in Central Sulawesi, Indonesia

    Science.gov (United States)

    van Straaten, Oliver

    2010-05-01

    Drought response on soil CO2 production dynamics were examined in two tropical ecosystems in central Sulawesi, Indonesia. Large-scale throughfall displacement roofs were built in a cacao (Theobroma cacao) / Gliricidia sepium agroforestry plantation (560 m.a.s.l.) and in a sub-montane tropical rainforest (1050 m.a.s.l.) to simulate drought conditions. At each site, ecosystem drought responses from three roof plots were compared to three undisturbed control plots. Soil CO2 production was measured spatially at the soil surface and vertically within the soil profile to 2.5 m depth every two weeks. 1. The cacao / Gliricidia ecosystem exhibited a mild drought response. Here, soil CO2 production decreased by 13% in comparison to the control plots during the 13 month induced drought. The mild drought response is attributed to two reasons. First, soil CO2 efflux exhibited an inverse parabolic relationship with soil moisture (R2 = 0.32): soil CO2 efflux peaked at intermediate moisture conditions, but was low when soil conditions became dry (in the induced drought plots), and when the soil became water saturated (in the control plots). This means that respiration differences between control and roof plots may have been masked when soil moisture conditions were saturated in the control and concurrently dry in roof plots. Secondly, the shallow rooted cacao understory grown next to the deeper rooted Gliricidia overstory created a favourable set of site conditions that enabled the ecosystem to mitigate serious drought stress. The experiment had a CO2 neutral effect overall: emissions were initially reduced during the induced drought period but rebounded and surpassed the control during the five month rewetting phase, thus compensating for earlier declines. 2. In contrast, the sub-montane tropical rainforest experienced a severe decrease in soil CO2 production. Here, soil CO2 efflux decreased by an average of 39% in comparison to the control during the 24 month induced drought

  11. Effects of modulation of pentose-phosphate pathway on biosynthesis of ansamitocins in Actinosynnema pretiosum.

    Science.gov (United States)

    Fan, Yuxiang; Hu, Fengxian; Wei, Liujing; Bai, Linquan; Hua, Qiang

    2016-07-20

    Ansamitocins, produced by Actinosynnema pretiosum, are a group of maytansinoid antibiotics that block the assembly of tubulin into functional microtubules. The precursors of ansamitocin biosynthesis are generally derived from the Embden-Meyerhof-Parnas (EMP) pathway and the tricarboxylic acid cycle. In this study, central carbon flux distributions were analyzed by (13)C-based flux analysis to reveal the contribution of individual central carbon metabolism pathways. To direct more carbon flux into ansamitocin biosynthesis, pentose phosphate (PP) pathway only and the combination of PP pathway and Entner-Doudoroff (ED) pathway were weakened, respectively. Ansamitocin P-3 (AP-3) productions by both kinds of pathways weakened mutant strains were significantly enhanced in chemically defined medium. In order to draw metabolic flux to the biosynthesis of ansamitocins more efficiently, heterologous phosphoglucomutase was subsequently overexpressed based on a mutant strain with combinational regulation of PP pathway and ED pathway. More fluxes were successfully directed into the UDP-glucose synthetic pathway and the AP-3 production was further improved in this case, reaching approximately 185mg/L in fermentation medium. It was demonstrated that eliminating the bypass pathways and favoring the precursor synthetic pathway could effectively improve ansamitocin production by A. pretiosum, suggesting a promising role of metabolic strategy in improving secondary metabolite production. PMID:27173582

  12. Current views on the regulation of autotrophic carbon dioxide fixation via the Calvin cycle in bacteria

    OpenAIRE

    Dijkhuizen, L; Harder, W

    1984-01-01

    The Calvin cycle of carbon dioxide fixation constitutes a biosynthetic pathway for the generation of (multi-carbon) intermediates of central metabolism from the one-carbon compound carbon dioxide. The product of this cycle can be used as a precursor for the synthesis of all components of cell material. Autotrophic carbon dioxide fixation is energetically expensive and it is therefore not surprising that in the various groups of autotrophic bacteria the operation of the cycle is under strict m...

  13. Charge exchange recombination spectroscopy measurements in the extreme ultraviolet region of central carbon concentrations during high power neutral beam heating in TFTR [Tokamak Fusion Test Reactor

    International Nuclear Information System (INIS)

    The carbon concentration in the central region of TFTR discharges with high power neutral beam heating has been measured by charge-extracted recombination spectroscopy (CXRS) of the C+5 n = 3--4 transition in the extreme ultraviolet region. The carbon concentrations were deduced from absolute measurements of the line brightness using a calculation of the beam attenuation and the appropriate cascade-corrected line excitation rates. As a result of the high ion temperatures in most of the discharges, the contribution of beam halo neutrals to the line brightness was significant and therefore had to be included in the modeling of the data. Carbon concentrations have been measured in discharges with Ip = 1.0-1.6 MA and beam power in the range of 2.6-30 MW, including a number of supershots. The results are in good agreement with carbon concentrations deduced from the visible bremsstrahlung Zeff and metallic impurity concentrations measured by x-ray pulse-height analysis, demonstrating the reliability of the atomic rates used in the beam attenuation and line excitation calculations. Carbon is the dominant impurity species in these discharges; the oxygen concentration measured via CXRS in a high beam power case was 0.0006 of ne, compard to 0.04 for carbon. Trends with Ip and beam power in the carbon concentration and the inferred deuteron concentration are presented. The carbon concentration is independent of Ip and decreases from 0.13 at 2.6 MW beam power to 0.04 at 30 MW, while the deuteron concentration increases from 0.25 to 0.75 over the same range of beam power. These changes are primarily the result of beam particle fueling, as the carbon density did not vary significantly with beam power. The time evolutions of the carbon and deuteron concentrations during two high power beam pulses, one which exhibited a carbon bloom and one which did not, are compared. 30 refs., 12 figs., 2 tabs

  14. Pathway focused protein profiling indicates differential function for IL-1B, -18 and VEGF during initiation and resolution of lung inflammation evoked by carbon nanoparticle exposure in mice

    Directory of Open Access Journals (Sweden)

    Hamelmann Eckard

    2009-12-01

    Full Text Available Abstract Background Carbonaceous nanoparticles possess an emerging source of human exposure due to the massive release of combustion products and the ongoing revolution in nanotechnology. Pulmonary inflammation caused by deposited nanoparticles is central for their adverse health effects. Epidemiological studies suggest that individuals with favourable lung physiology are at lower risk for particulate matter associated respiratory diseases probably due to efficient control of inflammation and repair process. Therefore we selected a mouse strain C3H/HeJ (C3 with robust lung physiology and exposed it to moderately toxic carbon nanoparticles (CNP to study the elicited pulmonary inflammation and its resolution. Methods 5 μg, 20 μg and 50 μg CNP were intratracheally (i.t. instilled in C3 mice to identify the optimal dose for subsequent time course studies. Pulmonary inflammation was assessed using histology, bronchoalveolar lavage (BAL analysis and by a panel of 62 protein markers. Results 1 day after instillation of CNP, C3 mice exhibited a typical dose response, with the lowest dose (5 μg representing the 'no effect level' as reflected by polymorphonuclear leucocyte (PMN, and BAL/lung concentrations of pro-inflammatory proteins. Histological analysis and BAL-protein concentration did not reveal any evidence of tissue injury in 20 μg CNP instilled animals. Accordingly time course assessment of the inflammatory response was performed after 3 and 7 days with this dose (20 μg. Compared to day 1, BAL PMN counts were significantly decreased at day 3 and completely returned to normal by day 7. We have identified protein markers related to the acute response and also to the time dependent response in lung and BAL. After complete resolution of PMN influx on day 7, we detected elevated concentrations of 20 markers that included IL1B, IL18, FGF2, EDN1, and VEGF in lung and/or BAL. Biological pathway analysis revealed these factors to be involved in a

  15. Carbon of Woody Debris in Plateau-type Karst Evergreen and Deciduous Broad-leaved Mixed Forest of Central Guizhou Province

    Science.gov (United States)

    Wu, Y.; Ni, J.; Liu, L.; Guo, C.

    2014-12-01

    Woody debris (WD) is an essential structural and functional component of forest ecosystems, and plays very significant roles for the biogeochemical cycling of carbon and nutrients. Coarse woody debris (CWD) is considered to be the major part in forest WD and it is primarily composed of logs, snags, stumps and large branches, while fine woody debris (FWD) mainly consists of small twigs. Composition, spatial distribution and carbon storage of WD have been studied in plateau-type karst evergreen and deciduous broad-leaved mixed forest in Tianlong Mountain of central Guizhou Province. Results showed that the carbon storage of WD in karst forests was less than non-karst forests. The major components of WD were fallen trees and snags with 10-20 cm in diameter. Fallen trees and snags with diameter greater than 20 cm were the smallest part of WD. The situation of WD in this region reflects the structural characteristics of WD in mid-late stage of plateau-type karst evergreen and deciduous broad-leaved mixed forest succession. The potential contribution of WD to the regional carbon cycle, and its relationship with climate change were finally discussed. The WD (especially CWD) plays an important role in the carbon cycle of karst forest. Forest WD production and decay rates may partially depend on climatic conditions, the accumulation of CWD and FWD carbon stocks in forests may be correlated with climate. Key words: woody debris, karst forests, carbon storage, spatial distribution, CWD, FWD.

  16. Do the Images of Neuronal Pathways in the Human Central Nervous System Show Feed-back? A Comparative Study in Fifteen Countries.

    Science.gov (United States)

    Clement, Pierre; Mouelhi, Lassaad; Kochkar, Momahed; Valanides, Nicos; Nisiforou, Olia; Thiaw, Seyni Mame; Ndiaye, Valdiodio; Jeanbart, Paula; Horvath, Daniel; Ferreira, Claudia; Carvalho, Graca S.

    2010-01-01

    In the human brain, the neuronal pathways are networks which support our learning, memory and thought, and which work with permanent feedback. However, only 19% of illustrations of these neuronal pathways, in the 55 analysed school textbooks coming from 15 countries, were showing feedbacks. The neuronal pathways related to movements were generally…

  17. The carbon storage regulator (Csr) system exerts a nutrient-specific control over central metabolism in Escherichia coli strain nissle 1917

    OpenAIRE

    Revelles, Olga; Millard, Pierre; Nougayrede, Jean-Philippe; Dobrindt, Ulrich; Oswald, Eric; Létisse, Fabien; Portais, Jean-Charles

    2013-01-01

    The role of the post-transcriptional carbon storage regulator (Csr) system in nutrient utilization and in the control of the central metabolism in E. coli reference commensal strain Nissle 1917 was investigated. Analysis of the growth capabilities of mutants altered for various components of the Csr system (csrA51, csrB, csrC and csrD mutations) showed that only the protein CsrA - the key component of the system - exerts a marked role in carbon nutrition. Attenuation of CsrA activity in the c...

  18. Isotopic characteristics of two kinds of hydrothermal carbonation in the Maria Lazara gold deposit. Goias Estate of Central Brazil

    International Nuclear Information System (INIS)

    In the hydrothermal halo of the Maria Lazara gold deposit, two kinds of carbonation were identified: pervasive carbonation, which corresponds to the disseminations of calcite in the hydrothermal halo represented by the biotite-sulfide and carbonate-chlorite zones and, venular carbonation expressed by quartz and calcite veins inserted in the inner biotite-sulfide zone show an organic carbon component depleted in C. In the carbonate-chlorite zone the calcite isotopic behavior reflects the Co2 derived from the metamorphism o the basic host-rocks. (author)

  19. Fractures Patterns of Tight Carbonates of Upper Jurassic Arab-D Member and Upper Jubaila Formation Outcrops, Central Saudi Arabia

    Science.gov (United States)

    Abdullatif, Osman; Abdlmutalib, Ammar

    2015-04-01

    This study investigates the fracture patterns of the upper Jurassic Arab-D member and upper Jubaila Formation outcropping in central Saudi Arabia. These strata represent the outcrop equivalent for Arab-D reservoir. The upper Jubaila Formation was deposited in the lower to upper slope to ramp crest leading to deposition Stromatoporoid lithofacies association, while Arab-D member deposited under deep to shallow lagoonal settings including skeletal bank and tidal flat lithofacies associations. This study utilized high resolution outcrop scale integrated fracture analysis, sedimentological and stratigraphical approach and methods.The field data included lithofacies, stratigraphic hierarchy, cyclicity and fracture measurements of orientation, length, spacing, intensity, and aperture. The Arab-D member is affected by five fracture patterns: (a) regular large scale fractures NW striking, several meters widely spaced, vertically dipping and cutting through several beds; (b) regular medium scale fractures striking NE and vertically dipping, moderately spaced and extending from two to three meters in length and cut through two or three beds; (c) regular small scale fractures that are arrested near the bed boundary vertically dipping and having less than one meter length and spacing; (d) irregular fractures filled with chemically weathered materials; (e) large scale fractures oriented perpendicular to the first fracture pattern in (a) along the outcrop strike and also cut on the top of the resistive sandy grainstone lithofacies of Arab D member. In contrast, the Upper Jubaila Formation is characterized mostly by medium scale NW and NE striking fractures that near vertically dipping and extended within one or two beds. Irregular small scale fractures also occur within parts of the beds of this group.Fracture formation and development in the Arab D and Jubaila Formation are partially attributed to regional tectonics affected the study area and locally to stratigraphic and

  20. Preliminary Black Carbon Record (1805 - 1943 AD) from the High Altitude Dasuopu Ice Core (7200 m) in the Central Himalaya

    Science.gov (United States)

    Barker, J. D.; Kaspari, S.; Wegner, A.; Thompson, L. G.; Gabrielli, P.

    2013-12-01

    Black carbon (BC) produced by the incomplete combustion of fossil and biofuels both amplifies mid-tropospheric atmospheric warming and decreases glacier surface albedo, and thus may influence regional climatic trends and water resource availability. The rapidly developing economies in Asia have been identified as significant sources of BC to the atmosphere on a continental scale in recent decades, but records available from this region to reconstruct BC concentrations spatially and temporally are limited. The analysis of BC preserved in glacier ice can provide a record of atmospheric BC content over time. We analyzed the Dasuopu Glacier ice core (Central Himalaya) for BC concentration at ~5 cm resolution using a Single Particle Soot Photometer (Droplet Measurement Technologies), and use the resultant record to describe trends in atmospheric BC from 1805 - 1943 AD. The Dasuopu ice core is unique because it was obtained at an exceptionally high elevation (7200 m a.s.l.) which may insolate it from local BC sources and reflect BC trends in a more mixed upper troposphere. Preliminary analysis of discrete sections shows that the Dasuopu ice core captures the seasonal BC deposition signal exceptionally well, with higher BC concentrations during winter-spring and lower concentrations during the summer monsoon season. Peak winter-spring concentrations pre-1890 are 10 ng g-1, increasing to as high as 30 ng g-1 during the 1890s - 1943. Additionally, background BC concentrations prior to 1890 are less than 0.5 ng g-1, and are consistently higher than 0.5 ng g-1 during the 1890s - 1943. The early 20th century BC increases are coincident with post-colonial industrialization of the Indian subcontinent. Preliminary results from the Dasuopu ice core highlight the utility of the BC record to detect perturbations in the carbon cycle at a regional scale, and the importance of an exceptionally high altitude location for detecting and preserving an atmospheric BC record. Future analyses

  1. Diverse and uneven pathways towards transition to low carbon development: The case of diffusion of solar PV technology in China

    OpenAIRE

    Iizuka, M.

    2014-01-01

    Transition towards low carbon development (LCD) is an urgent challenge for the global community. As increased economic activities usually result in more carbon emissions, this challenge is particularly crucial for rapidly growing emerging countries. For these countries, reducing carbon emissions means taking one or more of the following actions: (1) reducing energy intensity; (2) increasing the use of renewable energy; and (3) introducing systemic change. The above actions call for a strong r...

  2. Central composite design approach towards optimization of flamboyant pods derived steam activated carbon for its use as heterogeneous catalyst in transesterification of Hevea brasiliensis oil

    International Nuclear Information System (INIS)

    Highlights: • Activated carbon was prepared from novel precursor flamboyant pods (Delonix regia). • Activation process was optimized using central composite design approach. • Prepared activated carbon at optimized condition was used as support for KOH. • Carbon based heterogeneous catalyst was used in transesterification of HBO. • Effect of catalyst loading and alcohol ratio on biodiesel yield was studied. - Abstract: The present investigation emphasises the preparation of carbon based KOH impregnated heterogeneous catalyst from flamboyant pods (Delonix regia) for the production of biodiesel from novel feedstock Hevea brasiliensis oil (HBO). Initially, carbonized char was physically activated by superheated steam and the process was optimized to study the effects of activation time and temperature by central composite design approach (CCD) using response surface methodology (RSM). Activated carbon was impregnated with KOH at four different ratios. Biodiesel production process was carried out at constant temperature 60 °C, reaction time 1 h, and 5 g of carbon based catalyst at varying quantities of catalyst loading (0.5, 2, 3.5, 5 wt%) and methanol to oil ratio (5:1–20:1). The influence of parameters on the biodiesel yield at varied condition was studied. Maximum yield of 89.3% was obtained at methanol to oil ratio 15:1 and catalyst loading 3.5 wt% and corresponding yield at same process parameters was observed to be 88.7% implying the significant activity of catalyst in reutilization. Produced biodiesel was characterized following ASTM standards. The experimental analysis confirmed that the carbonaceous catalyst developed from flamboyant pods under optimized condition is capable of transesterifying HBO into biodiesel

  3. Promotion of renewable energy to mitigate impact of heavy use of carbon energy on society and climate change in Central Sub-Saharan Africa remote areas.

    Science.gov (United States)

    Kenfack, Joseph; Bignom, Blaise

    2015-04-01

    Sub-Saharan Africa owns important renewable energy potential and is still heavily using carbon energy. This is having a negative impact on the climate and on the environment. Given the local cost of carbon energy, the purchase power of people, the availability and the reserve of carbon energy in the area, this resource is being heavily used. This practice is harmful to the climate and is also resulting on poor effort to promote renewable energy in remote areas. The important renewable energy potential is still suffering from poor development. The purpose of this paper is among other things aiming at showing the rate of carbon energy use and its potential impact on climate and environment. We will also ensure that the renewable energy resources of Central Sub-Saharan Africa are known and are subject to be used optimally to help mitigate climate change. After showing some negative impacts of carbon energy used in the area, the work also suggests actions to promote and sustain the development of renewable energy. Based on the knowledge of the Central African energy sector, this paper will identify actions for reduce access to carbon energy and improved access to sustainable, friendly, affordable energy services to users as well as a significant improvement of energy infrastructure and the promotion of energy efficiency. We will show all type of carbon energy used, the potential for solar, biomass and hydro while showing where available the level of development. After a swot analysis of the situation, identified obstacles for the promotion of clean energy will be targeted. Finally, suggestions will be made to help the region develop a vision aiming at developing good clean energy policy to increase the status of renewable energy and better contribute to fight against climate change. Cameroon case study will be examined as illustration. Analysis will be made from data collected in the field. |End Text|

  4. Neurogenesis in the central olfactory pathway of adult decapod crustaceans: development of the neurogenic niche in the brains of procambarid crayfish

    Directory of Open Access Journals (Sweden)

    Sintoni Silvia

    2012-01-01

    Full Text Available Abstract Background In the decapod crustacean brain, neurogenesis persists throughout the animal's life. After embryogenesis, the central olfactory pathway integrates newborn olfactory local and projection interneurons that replace old neurons or expand the existing population. In crayfish, these neurons are the descendants of precursor cells residing in a neurogenic niche. In this paper, the development of the niche was documented by monitoring proliferating cells with S-phase-specific markers combined with immunohistochemical, dye-injection and pulse-chase experiments. Results Between the end of embryogenesis and throughout the first post-embryonic stage (POI, a defined transverse band of mitotically active cells (which we will term 'the deutocerebral proliferative system' (DPS appears. Just prior to hatching and in parallel with the formation of the DPS, the anlagen of the niche appears, closely associated with the vasculature. When the hatchling molts to the second post-embryonic stage (POII, the DPS differentiates into the lateral (LPZ and medial (MPZ proliferative zones. The LPZ and MPZ are characterized by a high number of mitotically active cells from the beginning of post-embryonic life; in contrast, the developing niche contains only very few dividing cells, a characteristic that persists in the adult organism. Conclusions Our data suggest that the LPZ and MPZ are largely responsible for the production of new neurons in the early post-embryonic stages, and that the neurogenic niche in the beginning plays a subordinate role. However, as the neuroblasts in the proliferation zones disappear during early post-embryonic life, the neuronal precursors in the niche gradually become the dominant and only mechanism for the generation of new neurons in the adult brain.

  5. On the peritidal cycles and their diagenetic evolution in the Lower Jurassic carbonates of the Calcare Massiccio Formation (Central Apennines

    Directory of Open Access Journals (Sweden)

    Brandano Marco

    2015-10-01

    Full Text Available This paper shows the environmental changes and high-frequency cyclicity recorded by Lower Jurassic shallow-water carbonates known as the Calcare Massiccio Formation which crop out in the central Apennines of Italy. Three types of sedimentary cycle bounded by subaerial erosion have been recognized: Type I consists of a shallowing upward cycle with oncoidal floatstones to rudstones passing gradationally up into peloidal packstone alternating with cryptoalgal laminites and often bounded by desiccation cracks and pisolitic-peloidal wackestones indicating a period of subaerial exposure. Type II shows a symmetrical trend in terms of facies arrangement with peloidal packstones and cryptoalgal laminites present both at the base and in the upper portion of the cycle, separated by oncoidal floatstones to rudstones. Type III displays a shallowing upward trend with an initial erosion surface overlain by oncoidal floatstones to rudstones that, in turn, are capped by pisolitic-peloidal wackestones and desiccation sheet cracks. Sheet cracks at the top of cycles formed during the initial phase of subaerial exposure were successively enlarged by dissolution during prolonged subaerial exposure. The following sea-level fall produced dissolution cavities in subtidal facies, while the successive sea-level rise resulted in the precipitation of marine cements in dissolution cavities. Spectral analysis revealed six peaks, five of which are consistent with orbital cycles. While a tectonic control cannot be disregarded, the main signal recorded by the sedimentary succession points toward a main control related to orbital forcing. High frequency sea-level fluctuations also controlled diagenetic processes.

  6. Implications of floristic and environmental variation for carbon cycle dynamics in boreal forest ecosystems of central Canada

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Zicheng; Apps, M.J.; Bhatti, J.S. [Canadan Forest Service, Edmonton (Canada). Northern Forestry Centre

    2002-06-01

    Species composition, detritus, and soil data from 97 boreal forest stands along a transect in central Canada were analysed using Correspondence Analysis to determine the dominant environmental/site variables that differentiate these forest stands. Picea mariana stands were densely clustered together on the understorey DCA plot, suggesting a consistent understorey species composition (feather mosses and Ericaceae), whereas Populus tremuloides stands had the most diverse understorey species composition (ca. 30 species, mostly shrubs and herbs). Pinus banksiana stands had several characteristic species of reindeer lichens (Cladina spp.), but saplings and Pinus seedlings were rare. Although climatic variables showed large variation along the transect, the CCA results indicated that site conditions are more important in determining species composition and differentiating the stand types. Forest floor characteristics (litter and humus layer, woody debris, and drainage) appear to be among the most important site variables. Stands of Picea had significantly higher average carbon (C) densities in the combined litter and humus layer (43,530 kg-C/ha) than either Populus (25,500 kg-C/ha) or Pinus (19,400 kg-C/ha). The thick surface organic layer in lowland Picea stands plays an important role in regulating soil temperature and moisture, and organic-matter decomposition, which in turn affect the ecosystem C-dynamics. During forest succession after a stand-replacing disturbance (e.g. fires), tree biomass and surface organic layer thickness increase in all stand types as forests recover; however, woody biomass detritus first decreases and then increases after ca. 80 yr. Soil C densities show slight decrease with ages in Populus stands, but increase in other stand types. These results indicate the complex C-transfer processes among different components (tree biomass, detritus, forest floor, and soil) of boreal ecosystems at various stages of succession.

  7. Reservoir Characterization for CO2 Sequestration: Assessing the Potential of the Devonian Carbonate Nisku Formation of Central Alberta

    International Nuclear Information System (INIS)

    The Wabamun Lake area of Central Alberta, Canada includes several large CO2 point source emitters, collectively producing more than 30 Mt annually. Previous studies established that deep saline aquifers beneath the Wabamun Lake area have good potential for the large-scale injection and storage of CO2. This study reports on the characterization of the Devonian carbonate Nisku Formation for evaluation as a CO2 repository. Major challenges for characterization included sparse well and seismic data, poor quality flow tests, and few modern measurements. Wire-line porosity measurements were present in only one-third of the wells, so porosity and flow capacity (permeability-thickness) were estimated using wire-line electrical measurements. The Archie cementation factor appears to vary between 2 and 3, creating uncertainty when predicting porosity using the electrical measurements; however, high-porosity zones could be identified. The electrically-based flow capacity predictions showed more favorable values using a correlation with core than the relation based on drill stem and production tests. This behavior is expected, since the flow test flow capacities are less influenced by local occurrences of very permeable vuggy and moldic rocks. Facies distributions were modeled using both pixel and object methods. The object models, using dimensions obtained from satellite imaging of modern day environments, gave results that were more consistent with the geological understanding of the Nisku and showed greater large-scale connectivity than the pixel model. Predicted volumes show considerable storage capacity in the Nisku, but flow simulations suggest injection capacities are below an initial 20 Mt/year target using vertical wells. More elaborate well designs, including fracture stimulation or multi-lateral wells may allow this goal to be reached or surpassed. (authors)

  8. Burial fluxes and sources of organic carbon in sediments of the central Yellow Sea mud area over the past 200 years

    Institute of Scientific and Technical Information of China (English)

    YANG Shu; YANG Qian; LIU Sai; CAI Deling; QU Keming; SUN Yao

    2015-01-01

    Long-term changes of composition, sources and burial fluxes of TOC (total organic carbon) in sediments of the central Yellow Sea mud area and their possible affecting factors are discussed in this paper. Firstly, similarity analysis is employed to confirm that the carbon burial features resulted from two collected cores are typical in the central Yellow Sea mud area where YSWC (Yellow Sea Warm Current) is prevalent. On this basis, the burial flux of TOC here was considered to be 235.5–488.4 μmol/(cm2∙a) since the first industrial revolution, accounting for about 70%–90% among burial fluxes of TC (total carbon) in the sediments. Compared TOC/TC ratio in the two cores with that in other marine sediments worldwide, we suggest that the growth of calcareous/non-calcareous organisms and dissolution of IC (inorganic carbon) are important factors controlling the TOC/TC ratio in sediment. Results of two-end mixed model based onδ13C data indicate that marine-derived organic carbon (OCa) is the main part among total burial organic carbon which accounts for a ratio over 85%. Due to the high TOC/TC ratio in the two cores, TC in the sediments also mainly exists as OCa, and the proportion of OCa is about 60%–80%. Away from the shore and relatively high primary production in upper waters are the main reasons that OCa is predominant among all burial OC in sediments of the central Yellow Sea mud area. Burial of OC in this mud area is probably mainly influenced by the human activities. Although the economic development during the late 19th century caused by the first industrial revolution in China did not obviously increase the TOC burial fluxes in the sediments, the rise of industry and agriculture after the founding of new China has clearly increased the TOC burial flux since 1950s. Otherwise, we also realize that among TC burial fluxes, TIC account for about 10%–30% in sediments of the central Yellow Sea mud area, so its burial could not be simply ignored here

  9. Demise of the northern Tethyan Urgonian carbonate platform and subsequent transition towards pelagic conditions: the sedimentary record of the Col de la Plaine Morte area, central Switzerland

    OpenAIRE

    Föllmi K.B.; Gainon F.

    2008-01-01

    The sedimentary succession of the Col de la Plaine Morte area (Helvetic Alps, central Switzerland) documents the disappearance of the northern Tethyan Urgonian platform in unprecedented detail and suggests stepwise platform demise, with each drowning phase documented by erosion and phosphogenesis. The first identified drowning phase terminated Urgonian carbonate production in a predominantly photozoan mode. Using a correlation of the whole-rock δ13C record with the well-dated record from SE F...

  10. A MicroRNA-Mediated Insulin Signaling Pathway Regulates the Toxicity of Multi-Walled Carbon Nanotubes in Nematode Caenorhabditis elegans

    Science.gov (United States)

    Zhao, Yunli; Yang, Junnian; Wang, Dayong

    2016-03-01

    The underlying mechanisms for functions of microRNAs (miRNAs) in regulating toxicity of nanomaterials are largely unclear. Using Illumina HiSeqTM 2000 sequencing technique, we obtained the dysregulated mRNA profiling in multi-walled carbon nanotubes (MWCNTs) exposed nematodes. Some dysregulated genes encode insulin signaling pathway. Genetic experiments confirmed the functions of these dysregulated genes in regulating MWCNTs toxicity. In the insulin signaling pathway, DAF-2/insulin receptor regulated MWCNTs toxicity by suppressing function of DAF-16/FOXO transcription factor. Moreover, we raised a miRNAs-mRNAs network involved in the control of MWCNTs toxicity. In this network, mir-355 might regulate MWCNTs toxicity by inhibiting functions of its targeted gene of daf-2, suggesting that mir-355 may regulate functions of the entire insulin signaling pathway by acting as an upregulator of DAF-2, the initiator of insulin signaling pathway, in MWCNTs exposed nematodes. Our results provides highlight on understanding the crucial role of miRNAs in regulating toxicity of nanomaterials in organisms.

  11. The effects of folate intake on DNA and single-carbon pathway metabolism in the fruit fly Drosophila melanogaster compared to mammals.

    Science.gov (United States)

    Blatch, Sydella A; Stabler, Sally P; Harrison, Jon F

    2015-11-01

    Mechanisms of vitamin function in non-mammals are poorly understood, despite being essential for development. Folate and cobalamin are B-vitamin cofactors with overlapping roles in transferring various single-carbon units. In mammals, one or both is needed for nucleotide synthesis, DNA methylation, amino acid conversions and other reactions. However, there has been little investigation of the response to folate or cobalamin in insects. Here, we manipulated folate intake and potentially cobalamin levels in the fruit fly Drosophila melanogaster with chemically-defined diets, an antibiotic to reduce bacterially-derived vitamins, and the folate-interfering pharmaceutical methotrexate, to see if single-carbon metabolites and DNA synthesis rates would be affected. We found that similar to mammals with low folate intake, fruit fly larvae had significantly slower growth and DNA synthesis rates. But changes to single carbon-metabolites did not mirror that of mammals with abnormal folate or given MTX. Five of the nine metabolites measured were not significantly affected (methionine, serine, glycine, methylglycine, and dimethylglycine) and three (cystathionine, methylgycine, and methylmalonic acid) were only decreased in larvae consuming methotrexate. Metabolites expected to be elevated if flies used cobalamin from microbial symbionts were not affected by dietary sulfaquinoxaline. Our data support the role of folate in nucleotide synthesis in D. melanogaster and that microbial symbionts provide functioning folates. We could not confirm how folate intake affects single carbon pathway metabolites, nor whether Drososphila use microbially-derived cobalamin. Further work should explore which cofactors are used in fruit flies in these important and potentially novel pathways. PMID:26219578

  12. Carbon mineralization in Arctic sediments northeast of Svalbard: Mn(IV) and Fe(III) reduction as principal anaerobic respiratory pathways

    DEFF Research Database (Denmark)

    Vandieken, Verona; Nickel, Maren; Jørgensen, Bo Barker

    2006-01-01

    Carbon oxidation rates and pathways were determined in 3 sediments at latitude 79 degrees to 81 degrees N in the Barents Sea, where the ice cover restricts primary production to a few months of the year. Oxygen uptake (1.5 to 3.5 imnol m(-2) d(-1)) and sulfate reduction (= 60 mu mol cm(-3)) and Fe......(III) (>= 108 mu mol cm(-3)), dissimilatory Mn(IV) and Fe(III) reduction contributed between 69 and >= 90% to anaerobic carbon mineralization in the upper 10 cm of the sediments. At 2 of the 3 stations, sulfate reduction rates were below our detection limit of 1 nmol cm(-3) d(-1). Solid Mn and Fe(III) were...... and sulfate reduction at 5 to 10 cm. Rates of microbial carbon oxidation were low compared to those in fjords on the west and south coasts of Svalbard. This is in accordance with the limited organic carbon supply by primary and secondary productivity caused by long periods of ice coverage....

  13. Structure of the carbon isotope excursion in a high-resolution lacustrine Paleocene-Eocene Thermal Maximum record from central China

    Science.gov (United States)

    Chen, Zuoling; Wang, Xu; Hu, Jianfang; Yang, Shiling; Zhu, Min; Dong, Xinxin; Tang, Zihua; Peng, Ping'an; Ding, Zhongli

    2014-12-01

    The carbon isotope excursion (CIE) associated with the Paleocene-Eocene Thermal Maximum (PETM) has been recognized for the first time in the micritic carbonate, total organic carbon (TOC) and black carbon (BC) contained within the lacustrine sediments from the Nanyang Basin, central China. The remarkably large excursion (∼ - 6 ‰) in the δ13CTOC and δ13CBC values is possibly attributable to increased humidity and elevated pCO2 concentration. The ∼ - 4 ‰ CIE recorded in the δ13Ccalcite, reflecting the average isotope change of the watershed system, is consistent with that observed in planktonic foraminifera. This correspondence suggests that the true magnitude of the carbon isotope excursion in the ocean-atmosphere system is likely close to - 4 ‰. The ∼10 m excursion onset in our multi-proxy δ13C records demonstrates that the large input of 13C-depleted carbon into the ocean-atmosphere system was not geologically instantaneous. Despite difference and somewhat smoothness in detailed pattern of the CIE due to localized controls on different substrates, inorganic and organic δ13C data generally depict a gradual excursion onset at least over timescales of thousands of years. In addition, continental temperature reconstruction, based on the distribution of membrane lipids of bacteria, suggests a warming of ∼4 °C prior to the PETM and ∼7 °C increase in temperature during the PETM. The temperature data are overall similar in pattern and trend to the δ13C change across the PETM. These observations, combined with pre-CIE warming, are in line with the idea that 13C-depleted carbon release operated as a positive feedback to temperature, suggesting supply from one or more large organic carbon reservoirs on Earth's surface.

  14. Transport of dissolved organic carbon from soil to surface water: Identification and modeling of pathways and controlling factors

    OpenAIRE

    Van Gaelen, Nele

    2016-01-01

    Dissolved organic carbon (DOC) in the surface water is an important component of the global carbon cycle. Due to its active and mobile nature, it affects aquatic ecosystems in several ways and plays a significant role in the cycling and distribution of carbon within and between ecosystems. Although the estimated annual flux of DOC from the land to the oceans is ±0.4 Pg C/year, almost half the current net terrestrial uptake of ±0.9 Pg C/year, the factors controlling the transport of DOC from t...

  15. Effect of Direct Seeding Mulch-Based Systems on Soil Carbon Storage and Macrofauna in Central Brazil

    OpenAIRE

    Eric Blanchart; Martial Bernoux; Xavier Sarda; Marcos Siqueira Neto; Carlos C. Cerri; Marisa Piccolo; Jean-marie Douzet; Eric Scopel; Christian Feller

    2007-01-01

    Soils represent a large carbon pool, approximately 1500 Gt, equivalent to almost three times the quantity stored in terrestrial biomass and twice the amount stored in the atmosphere. Any modification of land-use or land management can induce variations in soil carbon stocks, even in agricultural systems that are perceived to be in a steady state. These modifications also alter soil macrofauna that is known to affect soil carbon dynamics. Direct seeding Mulch-based Cropping (DMC) systems with ...

  16. Sources and the flux pattern of dissolved carbon in rivers of the Yenisey basin draining the Central Siberian Plateau

    International Nuclear Information System (INIS)

    Frequent measurements of dissolved organic (DOC) and inorganic (DIC) carbon concentrations in rivers during snowmelt, the entire ice-free season, and winter were made in five large watersheds (15 000–174 000 km2) of the Central Siberian Plateau (Yenisey River basin). These differ in the degree of continuous permafrost coverage, mean annual air temperature, and the proportion of tundra and forest vegetation. With an annual DOC export from the catchment areas of 2.8–4.7 gC m−2 as compared to an annual DIC export of 1.0–2.8 gC m−2, DOC was the dominant component of terrigenous C released to rivers. There was strong temporal variation in the discharge of DOC and DIC. Like for other rivers of the pan-arctic and boreal zones, snowmelt dominated annual fluxes, being 55–71% for water runoff, 64–82% for DOC and 37–41% for DIC. Likewise, DOC and DIC exhibited also a strong spatial variation in C fluxes, with both dissolved C species decreasing from south to north. The rivers of the southern part of the plateau had the largest flow-weighted DOC concentrations among those previously reported for Siberian rivers, but the smallest flow-weighted DIC concentrations. In the study area, DOC and DIC fluxes were negatively correlated with the distribution of continuous permafrost and positively correlated with mean annual air temperature. A synthesis of literature data shows similar trends from west to east, with an eastward decrease of dissolved C concentrations and an increased proportion of DOC in the total dissolved C flux. It appears that there are two contemporary limitations for river export of terrigenous C across Siberia: (1) low productivity of ecosystems with respect to potentially mobilizable organic C, slow weathering rates with concomitant small formation of bicarbonate, and/or wildfire disturbance limit the pools of organic and inorganic C that can be mobilized for transport in rivers (source-limited), and (2) mobilization of available pools of C is

  17. Immunosuppressive activity enhances central carbon metabolism and bioenergetics in myeloid-derived suppressor cells in vitro models

    Directory of Open Access Journals (Sweden)

    Hammami Ines

    2012-07-01

    Full Text Available Abstract Background The tumor microenvironment contains a vast array of pro- and anti-inflammatory cytokines that alter myelopoiesis and lead to the maturation of immunosuppressive cells known as myeloid-derived suppressor cells (MDSCs. Incubating bone marrow (BM precursors with a combination of granulocyte-macrophage colony-stimulating factor (GM-CSF and interleukin-6 (IL-6 generated a tumor-infiltrating MDSC-like population that impaired anti-tumor specific T-cell functions. This in vitro experimental approach was used to simulate MDSC maturation, and the cellular metabolic response was then monitored. A complementary experimental model that inhibited L-arginine (L-Arg metabolizing enzymes in MSC-1 cells, an immortalized cell line derived from primary MDSCs, was used to study the metabolic events related to immunosuppression. Results Exposure of BM cells to GM-CSF and IL-6 activated, within 24 h, L-Arg metabolizing enzymes which are responsible for the MDSCs immunosuppressive potential. This was accompanied by an increased uptake of L-glutamine (L-Gln and glucose, the latter being metabolized by anaerobic glycolysis. The up-regulation of nutrient uptake lead to the accumulation of TCA cycle intermediates and lactate as well as the endogenous synthesis of L-Arg and the production of energy-rich nucleotides. Moreover, inhibition of L-Arg metabolism in MSC-1 cells down-regulated central carbon metabolism activity, including glycolysis, glutaminolysis and TCA cycle activity, and led to a deterioration of cell bioenergetic status. The simultaneous increase of cell specific concentrations of ATP and a decrease in ATP-to-ADP ratio in BM-derived MDSCs suggested cells were metabolically active during maturation. Moreover, AMP-activated protein kinase (AMPK was activated during MDSC maturation in GM-CSF and IL-6–treated cultures, as revealed by the continuous increase of AMP-to-ATP ratios and the phosphorylation of AMPK. Likewise, AMPK activity was

  18. World-Economy Centrality and Carbon Dioxide Emissions: A New Look at the Position in the Capitalist World-System and Environmental Pollution

    Directory of Open Access Journals (Sweden)

    Paul Prew

    2015-08-01

    Full Text Available With the ever-growing concern of climate change, much attention has been paid to the factors driving carbon dioxide emissions. Previous research in the World-Systems perspective has identified a relationship between carbon dioxide emissions and position in the world-economy. This study intends to build on the previous research by developing a new, more parsimonious indicator of World-System position based on Immanuel Wallerstein’s theoretical concepts of incorporation and core-periphery processes. The new World-System indicator is derived from the centrality measure in network analysis based on import data from the International Monetary Fund’s Direction of Trade Statistics. Based on the theoretical concepts of core-periphery processes, carbon dioxide emissions are predicted to rise based on the predominance of energy-intensive, high-technology, core processes within the nation. The results tend to demonstrate a strong relationship between carbon dioxide emissions and position in the world-economy, and the new World-System position indicator is more strongly related with carbon dioxide emissions than Gross Domestic Product per capita.

  19. POSSIBLE LATE MIDDLE ORDOVICIAN ORGANIC CARBON ISOTOPE EXCURSION: EVIDENCE FROM ORDOVICIAN OILS AND HYDROCARBON SOURCE ROCKS, MID-CONTINENT AND EAST-CENTRAL UNITED STATES.

    Science.gov (United States)

    Hatch, Joseph R.; Jacobson, Stephen R.; Witzke, Brian J.; Risatti, J. Bruno; Anders, Donald E.; Watney, W. Lynn; Newell, K. David; Vuletich, April K.

    1987-01-01

    Oils generated by Middle Ordovician rocks are found throughout the Mid-Continent and east-central regions of the United States. Gas chromatographic characteristics of these oils include a relatively high abundance of n-alkanes with carbon numbers less than 20, a strong predominance of odd-numbered n-alkanes between C//1//0 and C//2//0, and relatively small amounts of branched and cyclic alkanes. The wide ranges in delta **1**3C for oils and rock extracts reflect a major, positive excursion(s) in organic matter delta **1**3C in late Middle Ordovician rocks. This excursion has at least regional significance in that it can be documented in sections 480 mi apart in south-central Kansas and eastern Iowa. The distance may be as much as 930 mi. The parallel shifts in organic and carbonate delta **1**3C in core samples from 1 E. M. Greene well, Washington County, Iowa, imply changes in the isotope composition of the ocean-atmosphere carbon reservoir. These and other aspects of the subject are discussed.

  20. Fluxes and 13C isotopic composition of dissolved carbon and pathways of methanogenesis in a fen soil exposed to experimental drought

    Directory of Open Access Journals (Sweden)

    C. Blodau

    2008-10-01

    Full Text Available Peatlands contain a carbon stock of global concern and significantly contribute to the global methane burden. The impact of drought and rewetting on carbon cycling in peatland ecosystems is thus currently debated. We studied the impact of experimental drought and rewetting on intact monoliths from a temperate fen over a period of ~300 days, using a permanently wet treatment and two treatments undergoing drought for 50 days. In one of the mesocosms, vegetation had been removed. Net production of CH4 was calculated from mass balances in the peat and emission using static chamber measurements. Results were compared to 13C isotope budgets of CO2 and CH4 and energy yields of acetoclastic and hydrogenotrophic methanogenesis. Drought retarded methane production after rewetting for days to weeks and promoted methanotrophic activity. Based on isotope and flux budgets, aerobic soil respiration contributed 32–96% in the wet treatment and 86–99% in the other treatments. Drying and rewetting did not shift methanogenic pathways according to δ13C ratios of CH4 and CO2. Although δ13C ratios indicated a prevalence of hydrogenotrophic methanogenesis, free energies of this process were small and often positive on the horizon scale. This suggests that methane was produced very locally. Fresh plant-derived carbon input apparently supported respiration in the rhizosphere and sustained methanogenesis in the unsaturated zone, according to a 13C-CO2 labelling experiment. The study documents that drying and rewetting in a rich fen soil may have little effect on methanogenic pathways, but result in rapid shifts between methanogenesis and methanotrophy. Such shifts may be promoted by roots and soil heterogeneity, as hydrogenotrophic methanogenesis occurred locally even when conditions were not conducive for this process in the bulk peat.

  1. A roadmap towards a low-carbon society in Japan using backcasting methodology: Feasible pathways for achieving an 80% reduction in CO2 emissions by 2050

    International Nuclear Information System (INIS)

    The purpose of the study is to analyze feasibility and a roadmap of a low-carbon society in Japan by 2050, while satisfying required demands. Future technology roadmaps, CO2 emission pathways and energy mix transitions leading Japan are calculated using the AIM/Backcasting Model based on backcasting methodology with taking into consideration that one of the keys for technological market penetration is the preferences of consumers. Under the CO2 emission target of 80% reduction as compared to 1990 level by 2050, it is found from the results that the target is feasible in Japan by implementing actions toward low-carbon society as early as possible. From the perspective of minimizing the total costs, it would be best to target a reduction rate of 16–20% in 2020, 31–35% in 2030 and 53–56% in 2040 within the range of Scenarios A and B. During this process, major investment will be needed in the early stage of the analytical periods, especially in the residential, commercial and transport sectors. However, viewed in the long term, this can be recovered by reduction in energy consumption. Moreover, the analysis suggests that returns that balance the total investment may be possible. - Highlights: ► Reducing CO2 emissions by 80% of 1990 levels by 2050 is achievable in Japan. ► Feasible pathway is examined by the AIM/Backcasting Model based on backcasting methodology. ► Taking steps sooner will increase the likelihood of achieving a low-carbon society. ► Major investment will be needed in the early stage of the analytical periods. ► Viewed in the long term, this can be recovered by reduction in energy consumption.

  2. Highly stable rice-straw-derived charcoal in 3700-year-old ancient paddy soil: evidence for an effective pathway toward carbon sequestration.

    Science.gov (United States)

    Wu, Mengxiong; Yang, Min; Han, Xingguo; Zhong, Ting; Zheng, Yunfei; Ding, Pin; Wu, Weixiang

    2016-01-01

    Recalcitrant charcoal application is predicted to decelerate global warming through creating a long-term carbon sink in soil. Although many studies have showed high stability of charcoal derived from woody materials, few have focused on the dynamics of straw-derived charcoal in natural environment on a long timescale to evaluate its potential for agricultural carbon sequestration. Here, we examined straw-derived charcoal in an ancient paddy soil dated from ~3700 calendar year before present (cal. year BP). Analytical results showed that soil organic matter consisted of more than 25% of charcoal in charcoal-rich layer. Similarities in morphology and molecular structure between the ancient and the fresh rice-straw-derived charcoal indicated that ancient charcoal was derived from rice straw. The lower carbon content, higher oxygen content, and obvious carbonyl of the ancient charcoal compared with fresh rice straw charcoal implied that oxidation occurred in the scale of thousands years. However, the dominant aromatic C of ancient charcoal indicated that rice-straw-derived charcoal was highly stable in the buried paddy soil due to its intrinsic chemical structures and the physical protection of ancient paddy wetland. Therefore, it may suggest that straw charcoal application is a potential pathway for C sequestration considering its longevity. PMID:25850742

  3. The journey towards decarbonization: Exploring socio-technical transitions in the electricity sector in the province of Ontario (1885–2013) and potential low-carbon pathways

    International Nuclear Information System (INIS)

    This article employs the multi-level perspective on socio-technical transitions to explore the historical evolution of the electricity regime in the province of Ontario from 1885-2013 and to interpret the potential for future movement towards decarbonization. With an emphasis on the political and social dimensions of transitions, this analysis traces the key features influencing change within Ontario's electricity system over the past century. This paper uses multiple criteria (the phase of electrification; role of the electricity system in economic development; structures of ownership, market and regulation; dominant technologies; and the relative stability of arrangements) to characterize distinct regime configurations and periods of instability which separate relatively stable system orientations. Lessons are drawn from the historical case with implications for future decarbonization in the province, including the importance of: (1) residual momentum; (2) embedded guiding principles; and, (3) politico-economic coalitions. - Highlights: • Investigates transitions in the electricity sector using the multi-level perspective. • Explores the socio-technical evolution of the electricity system in Ontario. • Draws lessons relevant for low-carbon transitions. • Poses key questions for the development of low-carbon pathways in Ontario. • Provides insights on the political dimensions of low-carbon transitions

  4. Hepatic Progenitor Cells Contribute to the Progression of 2-Acetylaminofluorene/Carbon Tetrachloride-Induced Cirrhosis via the Non-Canonical Wnt Pathway.

    Directory of Open Access Journals (Sweden)

    Jiamei Chen

    Full Text Available Hepatic progenitor cells (HPCs appear to play an important role in chronic liver injury. In this study, cirrhosis was induced in F-344 rats (n = 32 via subcutaneous injection of 50% carbon tetrachloride (CCl4 twice a week for 8 weeks. Then, 30% CCl4 was administered in conjunction with intragastric 2-acetylaminofluorine (2-AAF for 4 weeks to induce activation of HPCs. WB-F344 cells were used to provide direct evidence for differentiation of HPCs to myofibroblasts. The results showed that after administration of 2-AAF, the hydroxyproline content and the expressions of α-SMA, Col I, Col IV, TGF-β1, CD68, TNF-α, CK19 and OV6 were significantly increased. OV6 and α-SMA were largely co-expressed in fibrous septum and the expressions of Wnt5b, frizzled2, frizzled3 and frizzled6 were markedly increased, while β-catenin expression was not statistically different among the different groups. Consistent with the above results, WB-F344 cells, treated with TGF-β1 in vitro, differentiated into myofibroblasts and α-SMA, Col I, Col IV, Wnt5b and frizzled2 expressions were significantly increased, while β-catenin expression was decreased. After blocking the non-canonical Wnt pathway via WIF-1, the Wnt5b level was down regulated, and α-SMA and F-actin expressions were significantly decreased in the WIF-1-treated cells. In conclusion, these results indicate that HPCs appear to differentiate into myofibroblasts and exhibit a profibrotic effect in progressive cirrhosis via activation of the non-canonical Wnt pathway. Blocking the non-canonical Wnt pathway can inhibit the differentiation of HPCs into myofibroblasts, suggesting that blocking this pathway and changing the fate of differentiated HPCs may be a potential treatment for cirrhosis.

  5. Hepatic Progenitor Cells Contribute to the Progression of 2-Acetylaminofluorene/Carbon Tetrachloride-Induced Cirrhosis via the Non-Canonical Wnt Pathway.

    Science.gov (United States)

    Chen, Jiamei; Zhang, Xiao; Xu, Ying; Li, Xuewei; Ren, Shuang; Zhou, Yaning; Duan, Yuyou; Zern, Mark; Zhang, Hua; Chen, Gaofeng; Liu, Chenghai; Mu, Yongping; Liu, Ping

    2015-01-01

    Hepatic progenitor cells (HPCs) appear to play an important role in chronic liver injury. In this study, cirrhosis was induced in F-344 rats (n = 32) via subcutaneous injection of 50% carbon tetrachloride (CCl4) twice a week for 8 weeks. Then, 30% CCl4 was administered in conjunction with intragastric 2-acetylaminofluorine (2-AAF) for 4 weeks to induce activation of HPCs. WB-F344 cells were used to provide direct evidence for differentiation of HPCs to myofibroblasts. The results showed that after administration of 2-AAF, the hydroxyproline content and the expressions of α-SMA, Col I, Col IV, TGF-β1, CD68, TNF-α, CK19 and OV6 were significantly increased. OV6 and α-SMA were largely co-expressed in fibrous septum and the expressions of Wnt5b, frizzled2, frizzled3 and frizzled6 were markedly increased, while β-catenin expression was not statistically different among the different groups. Consistent with the above results, WB-F344 cells, treated with TGF-β1 in vitro, differentiated into myofibroblasts and α-SMA, Col I, Col IV, Wnt5b and frizzled2 expressions were significantly increased, while β-catenin expression was decreased. After blocking the non-canonical Wnt pathway via WIF-1, the Wnt5b level was down regulated, and α-SMA and F-actin expressions were significantly decreased in the WIF-1-treated cells. In conclusion, these results indicate that HPCs appear to differentiate into myofibroblasts and exhibit a profibrotic effect in progressive cirrhosis via activation of the non-canonical Wnt pathway. Blocking the non-canonical Wnt pathway can inhibit the differentiation of HPCs into myofibroblasts, suggesting that blocking this pathway and changing the fate of differentiated HPCs may be a potential treatment for cirrhosis. PMID:26087010

  6. Structure of PhnP: a phosphodiesterase of the carbon-phosphorous lyase pathway for phosphonate degradation

    DEFF Research Database (Denmark)

    Podzelinska, Kateryna; He, Shu-Mei; Wathier, Matthew;

    2009-01-01

    Carbon-phosphorus lyase is a multienzyme system encoded by the phn operon that enables bacteria to metabolize organophosphonates when the preferred nutrient, inorganic phosphate, is scarce. One of the enzymes encoded by this operon, PhnP, is predicted by sequence homology to be a metal-dependent ...

  7. Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway

    DEFF Research Database (Denmark)

    Jochimsen, Bjarne; Lolle, Signe; McSorley, Fern R.;

    2011-01-01

    Organophosphonate utilization by Escherichia coli requires the 14 cistrons of the phnCDEFGHIJKLMNOP operon, of which the carbon-phosphorus lyase has been postulated to consist of the seven polypeptides specified by phnG to phnM. A 5,660-bp DNA fragment encompassing phnGHIJKLM is cloned, followed by...

  8. Spring bloom community change modifies carbon pathways and C : N : P : Chl a stoichiometry of coastal material fluxes

    Directory of Open Access Journals (Sweden)

    K. Spilling

    2014-08-01

    Full Text Available Diatoms and dinoflagellates are major bloom-forming phytoplankton groups competing for resources in the oceans and coastal seas. Recent evidence suggests that their competition is significantly affected by climatic factors under ongoing change, modifying especially the conditions for cold-water, spring bloom communities in temperate and arctic regions. We investigated the effects of phytoplankton community composition on spring bloom carbon flows and nutrient stoichiometry in multi-year mesocosm experiments. Comparison of differing communities showed that community structure significantly affected C accumulation parameters, with highest particulate organic carbon (POC build-up and dissolved organic carbon (DOC release in diatom-dominated communities. In terms of inorganic nutrient drawdown and bloom accumulation phase, the dominating groups behaved as functional surrogates. Dominance patterns, however, significantly affected C : N : P : Chl a ratios over the whole bloom event: when diatoms were dominant, these ratios increased compared to dinoflagellate dominance or mixed communities. Diatom-dominated communities sequestered carbon up to 3.6-fold higher than the expectation based on the Redfield ratio, and 2-fold higher compared to dinoflagellate dominance. To our knowledge, this is the first experimental report of consequences of climatically driven shifts in phytoplankton dominance patterns for carbon sequestration and related biogeochemical cycles in coastal seas. Our results also highlight the need for remote sensing technologies with taxonomical resolution, as the C : Chl a ratio was strongly dependent on community composition and bloom stage. Climate-driven changes in phytoplankton dominance patterns will have far-reaching consequences for major biogeochemical cycles and need to be considered in climate change scenarios for marine systems.

  9. An assessment on in-vehicle concentration of carbon monoxide for taxis in central business district of Tehran

    Directory of Open Access Journals (Sweden)

    Nabi ollah Mansouri

    2013-01-01

    Full Text Available Background and Aim: Carbon monoxide is colorless and odorless gas. In high concentrations, CO is deadly poisonous and in low concentrations can cause fatigue, headache, dizziness and seizures. Carbon monoxide has a high affinity to combines hemoglobin which can decrease oxygen capacity in blood. To address this problem, human body begins to produce red blood cells, this can increases blood viscosity and thus increase diseases such as stroke and heart attack. About 60 percent of total emissions of carbon monoxide are associated automobile exhaust. In this study, concentration of carbon monoxide has been measured in the cabin space of taxis in high-traffic areas of Tehran.Materials and Methods: This study is carried out in spring and summer 2011. Concentrations of carbon monoxide in different types of taxi cabin space (Peugeot, Samand, Pride and Peykan were measured by carbon monoxide meter Q RAE 2 models in different conditions of motion: high speed (over 45 kilometers per hour, low speed (15-30 kilometers per hour and stop (0 kilometers per hour. Results: Results showed that concentration of carbon monoxide in old vehicles (above 10 years is more than three times compared to new vehicles and outdoor. In addition, according to the measured values, at low speeds, values of CO rapidly increased, so that in speeds of less than 15 km, values of CO go beyond standard values (9 ppm.Conclusion: Results show that the mean value of the measured concentration of carbon monoxide is higher than amounts recommended by WHO and EPA and local authorities such as Air Quality Control Organization of Tehran. Concentrations observed in this study are up to 40 more than results of a study by German researchers in summer 1995 and winter 1996.

  10. Brain architecture of the largest living land arthropod, the Giant Robber Crab Birgus latro (Crustacea, Anomura, Coenobitidae: evidence for a prominent central olfactory pathway?

    Directory of Open Access Journals (Sweden)

    Krieger Jakob

    2010-09-01

    suggest that B. latro has visual and mechanosensory skills that are comparable to those of marine Crustacea. Conclusions In parallel to previous behavioral findings that B. latro has aerial olfaction, our results indicate that their central olfactory pathway is indeed most prominent. Similar findings from the closely related terrestrial hermit crab Coenobita clypeatus suggest that in Coenobitidae, olfaction is a major sensory modality processed by the brain, and that for these animals, exploring the olfactory landscape is vital for survival in their terrestrial habitat. Future studies on terrestrial members of other crustacean taxa such as Isopoda, Amphipoda, Astacida, and Brachyura will shed light on how frequently the establishment of an aerial sense of olfaction evolved in Crustacea during the transition from sea to land. Amounting to ca. 1,000,000, the numbers of interneurons that analyse the olfactory input in B. latro brains surpasses that in other terrestrial arthropods, as e.g. the honeybee Apis mellifera or the moth Manduca sexta, by two orders of magnitude suggesting that B. latro in fact is a land-living arthropod that has devoted a substantial amount of nervous tissue to the sense of smell.

  11. The influence of climate cycles on the water regime and carbonate profile in chernozems of Central European Russia and adjacent territories

    Science.gov (United States)

    Bazykina, G. S.; Ovechkin, S. V.

    2016-04-01

    The influence of long-term "dry" and "wet" climatic cycles on the water regime, hydrological parameters, and carbonate profiles of chernozems in Central European Russia and adjacent territories was studied. The hydrological and carbonate profiles were found to change during the wet cycle. However, the upper part of the hydrological profile is basically unchanging, whereas in its lower part, the number of hydrological horizons and contrast in their moistening decrease in the forest-steppe chernozems and increase in the steppe chernozems. The frequency of through wetting of chernozems increases during the wet cycles. The vertical lithological heterogeneity of the parent material affects the soil moisture status. In the wet climatic cycle, the moisture content above the lithological contact increases resulting in the development of the features of soil hydromorphism. In the carbonate profile, the character of pedofeatures is changing: some carbonate neoformations disappear, while the other ones develop. Possible variations of the periodically percolative water regime were revealed in chernozems. The classification of water regime proposed by A.A. Rode may be updated based on the data obtained during the dry climatic cycle. Rode's hypothesis about cyclic variations in the soil water regime is confirmed.

  12. Regulation of carbon and electron flow in Propionispira arboris: Relationship of catabolic enzyme levels to carbon substrates fermented during propionate formation via the methylmalony coenzyme a pathway

    International Nuclear Information System (INIS)

    A detailed study of the glucose fermentation pathway and the modulation of catabolic oxidoreductase activities by energy sources (i.e., glucose versus lactate of fumarate) in Propionispira arboris was performed. 14C radiotracer data show the CO2 produced from pyruvate oxidation comes exclusively from the C-3 and C-4 positions of glucose. Significant specific activities of glyceraldehyde-3-phosphate dehydrogenase and fructose-1,6-bisphosphate aldolase were detected, which substantiates the utilization of the Embden-Meyerhoff-Parnas path for glucose metabolism. The methylmalonyl coenzyme A pathway for pyruvate reduction to propionate was established by detection of significant activities of methylmalonyl coenzyme A transcarboxylase, malate dehydrogenase, and fumarate reductase in cell-free extracts and by 13C nuclear magnetic resonance spectroscpic demonstation of randomization of label from [2-13C]pyruvate into positions 2 and 3 of propionate. The specific activity of pyruvate-ferredoxin oxidoreductase, malate dehydrogenase, fumarate reductase, and transcarboxylase varied significantly in cells grown on different energy sources. D-Lactate dehydrogenase (non-NADH linked) was present in cells of P. arboris grown on lactate but not in cells grown on glucose or fumarate. These results indicate that growth substrates regulate synthesis of enzymes specific for the methylmalonyl coenzyme A path initial substrate transformation

  13. Regulation of Dual Glycolytic Pathways for Fructose Metabolism in Heterofermentative Lactobacillus panis PM1

    OpenAIRE

    Kang, Tae Sun; Korber, Darren R; Tanaka, Takuji

    2013-01-01

    Lactobacillus panis PM1 belongs to the group III heterofermentative lactobacilli that use the 6-phosphogluconate/phosphoketolase (6-PG/PK) pathway as their central metabolic pathway and are reportedly unable to grow on fructose as a sole carbon source. We isolated a variant PM1 strain capable of sporadic growth on fructose medium and observed its distinctive characteristics of fructose metabolism. The end product pattern was different from what is expected in typical group III lactobacilli us...

  14. Zero Carbon Latin America - A pathway for net decarbonisation of the regional economy by mid-century

    DEFF Research Database (Denmark)

    Vergara, Walter; Fenhann, Jørgen Villy; Schletz, Marco Christian

    The objective of the analysis presented in this report is to visualize a pathway for complete decarbonisation of the Latin American and the Caribbean (LAC) regional economy by mid-century. This is achieved through a review of specific sector-wide actions, within a foreseeable technology and...... economics context. The analysis is being conducted at a time of considerable momentum in addressing the climate challenge globally, and after a decade of remarkable socio-economic progress at the regional level. The report also comments on the key barriers that have to be addressed....

  15. Reservoir Characterization for CO2 Sequestration: Assessing the Potential of the Devonian Carbonate Nisku Formation of Central Alberta Caractérisation de réservoir en vue du stockage géologique de CO2 : évaluation du potentiel offert par les carbonates dévoniens de la formation de Nisku, en Alberta central

    OpenAIRE

    Eisinger C.; Jensen J

    2011-01-01

    The Wabamun Lake area of Central Alberta, Canada includes several large CO2 point source emitters, collectively producing more than 30 Mt annually. Previous studies established that deep saline aquifers beneath the Wabamun Lake area have good potential for the large-scale injection and storage of CO2. This study reports on the characterization of the Devonian carbonate Nisku Formation for evaluation as a CO2 repository. Major challenges for characterization included sparse well and seis...

  16. Potentiation of glutamate release caused by delta—methrin and the possible mechanism associated with carbon monoxide pathway and protein kinase C

    Institute of Scientific and Technical Information of China (English)

    AiBM; LiuYG

    2002-01-01

    The acute neurotoxicity of delta-methrin is thought to be associated with the release of grutamate from synaptosomes in brain.However,the mechanism how delta-methrin enhances the glutamate release has still not been elucidated.Here we report that both carbon monoxide(CO) and the activator of protein kinase C(PKC),similarly to delta-methrin,potentiate the Ca2+-dependent glutamate release from rat cerebral cortical synaptosomes,otherwise,the release of glutamate is inhibited by zinc proporphyrin-9(ZnPP-9) and inhibitors of PKC or of protein kinase G(PKG).In addition,the inhibitors of ZnPP-9 PKC and PKG seem to weaken the enhancement of glutamate releas caused by delta-methrin.So,we conclude that CO signal transduction pathway and PKC mediate the glutamate release from synptosomes by delta-methrin.

  17. Carbon sequestration in Chir-Pine (Pinus roxburghii Sarg.) forests un-der various disturbance levels in Kumaun Central Himalaya

    Institute of Scientific and Technical Information of China (English)

    Harshit Pant; Ashish Tewari

    2014-01-01

    We studied variations in tree biomass and carbon sequestra-tion rates of Chir Pine (Pinus roxburghii. Sarg.) forest in three categories of forest disturbance, protected, moderately disturbed, and highly dis-turbed. In the first year, total biomass was 14.7 t⋅ha-1 in highly disturbed site, 94.46 t⋅ha-1 in moderately disturbed forest, and 112.0 t⋅ha-1 in pro-tected forest. The soil organic carbon in the top 20 cm of soil ranged from 0.63 to 1.2%. The total rate of carbon sequestration was 0.60 (t/ha)·a-1on the highly disturbed site, 1.03 (t/ha)·a-1 on the moderately disturbed site, and 4.3 (t/ha)·a-1 on the protected site.

  18. Genetic engineering to enhance the Ehrlich pathway and alter carbon flux for increased isobutanol production from glucose by Saccharomyces cerevisiae.

    Science.gov (United States)

    Kondo, Takashi; Tezuka, Hironori; Ishii, Jun; Matsuda, Fumio; Ogino, Chiaki; Kondo, Akihiko

    2012-05-31

    The production of higher alcohols by engineered bacteria has received significant attention. The budding yeast, Saccharomyces cerevisiae, has considerable potential as a producer of higher alcohols because of its capacity to naturally fabricate fusel alcohols, in addition to its robustness and tolerance to low pH. However, because its natural productivity is not significant, we considered a strategy of genetic engineering to increase production of the branched-chain higher alcohol isobutanol, which is involved in valine biosynthesis. Initially, we overexpressed 2-keto acid decarboxylase (KDC) and alcohol dehydrogenase (ADH) in S. cerevisiae to enhance the endogenous activity of the Ehrlich pathway. We then overexpressed Ilv2, which catalyzes the first step in the valine synthetic pathway, and deleted the PDC1 gene encoding a major pyruvate decarboxylase with the intent of altering the abundant ethanol flux via pyruvate. Through these engineering steps, along with modification of culture conditions, the isobutanol titer of S. cerevisiae was elevated 13-fold, from 11 mg/l to 143 mg/l, and the yield was 6.6 mg/g glucose, which is higher than any previously reported value for S. cerevisiae. PMID:22342368

  19. Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using 13 C metabolic flux analysis

    Directory of Open Access Journals (Sweden)

    Usui Yuki

    2012-06-01

    Full Text Available Abstract Background It has long been recognized that analyzing the behaviour of the complex intracellular biological networks is important for breeding industrially useful microorganisms. However, because of the complexity of these biological networks, it is currently not possible to obtain all the desired microorganisms. In this study, we constructed a system for analyzing the effect of gene expression perturbations on the behavior of biological networks in Escherichia coli. Specifically, we utilized 13 C metabolic flux analysis (13 C-MFA to analyze the effect of perturbations to the expression levels of pgi and eno genes encoding phosphoglucose isomerase and enolase, respectively on metabolic fluxes. Results We constructed gene expression-controllable E. coli strains using a single-copy mini F plasmid. Using the pgi expression-controllable strain, we found that the specific growth rate correlated with the pgi expression level. 13 C-MFA of this strain revealed that the fluxes for the pentose phosphate pathway and Entner-Doudoroff pathway decreased, as the pgi expression lelvel increased. In addition, the glyoxylate shunt became active when the pgi expression level was almost zero. Moreover, the flux for the glyoxylate shunt increased when the pgi expression level decreased, but was significantly reduced in the pgi-knockout cells. Comparatively, eno expression could not be decreased compared to the parent strain, but we found that increased eno expression resulted in a decreased specific growth rate. 13 C-MFA revealed that the metabolic flux distribution was not altered by an increased eno expression level, but the overall metabolic activity of the central metabolism decreased. Furthermore, to evaluate the impact of perturbed expression of pgi and eno genes on changes in metabolic fluxes in E. coli quantitatively, metabolic sensitivity analysis was performed. As a result, the perturbed expression of pgi gene had a great impact to the

  20. Single-walled carbon nanotube exposure induces membrane rearrangement and suppression of receptor-mediated signalling pathways in model mast cells

    Science.gov (United States)

    Umemoto, Eric Y.; Speck, Mark; Shimoda, Lori M.N.; Kahue, Kara; Sung, Carl; Stokes, Alexander J.; Turner, Helen

    2014-01-01

    Carbon nanotubes (CNT) are environmental challenges to the respiratory and gastrointestinal mucosa, and to the dermal immune system. Mast cells (MC) are pro-inflammatory immunocytes that reside at these interfaces with the environment. Mast cells are sources of pro-inflammatory mediators (histamine, serotonin, matrix-active proteases, eicosanoids, prostanoids, cytokines and chemokines), which are released in a calcium-dependent manner following immunological challenge or physico-chemical stimulation. Since C-60 fullerenes, which share geometry with CNT, are suppressive of mast cell-driven inflammatory responses, we explored the effects of unmodified SWCNT aggregates on mast cell signaling pathways, phenotype and pro-inflammatory function. We noted SWCNT suppression of antigen-induced signalling pathways and pro-inflammatory degranulation responses. Mast cells recognize unmodified SWCNT by remodeling the plasma membrane, disaggregating the cortical actin cytoskeleton and relocalizing clathrin. Clathrin was also identified as a component of an affinity-purified ‘interactome’ isolated from MC using an SWCNT affinity matrix for mast cell lysates. Together these data are consistent with the ability of SWCNT to suppress mast cell pro-inflammatory function via a novel recognition mechanism. PMID:24910985

  1. A new approach to understand methylmercury (CH3Hg) sources and transformation pathways: Compound-specific carbon stable isotope analysis by GC-C-IRMS

    Science.gov (United States)

    Baya, P. A.; Point, D.; Amouroux, D. P.; Lebreton, B.; Guillou, G.

    2015-12-01

    Methylmercury (CH3Hg) is a potent neurotoxin which is readily assimilated by organisms and bio-accumulates in aquatic food webs. In humans, consumption of CH3Hg contaminated marine fish is the major route of mercury exposure. However, our understanding of CH3Hg transformation pathways is still incomplete. To close this knowledge gap, we propose to explore the stable carbon isotopic composition (δ13C) of the methyl group of CH3Hg for a better understanding of its sources and transformation mechanisms. The method developed for the determination of the δ13C value of CH3Hg in biological samples involves (i) CH3Hg selective extraction, (ii) derivatization, and (iii) separation by gas chromatography (GC) prior to analysis by combustion isotope ratio mass spectrometry (C-IRMS). We present the figures of merit of this novel method and the first δ13C signatures for certified materials (ERM-CE464, BCR414) and biological samples at different marine trophic levels (i.e., tuna fish, zooplankton). The implications of this new approach to trace the pathways associated with Hg methylation and the mechanisms involved will be discussed.

  2. T Tubules and Surface Membranes Provide Equally Effective Pathways of Carbonic Anhydrase-Facilitated Lactic Acid Transport in Skeletal Muscle

    OpenAIRE

    Hallerdei, Janine; Scheibe, Renate J.; Parkkila, Seppo; Waheed, Abdul; Sly, William S.; Gros, Gerolf; Wetzel, Petra; Endeward, Volker

    2010-01-01

    We have studied lactic acid transport in the fast mouse extensor digitorum longus muscles (EDL) by intracellular and cell surface pH microelectrodes. The role of membrane-bound carbonic anhydrases (CA) of EDL in lactic acid transport was investigated by measuring lactate flux in muscles from wildtype, CAIV-, CAIX- and CAXIV-single ko, CAIV-CAXIV double ko and CAIV–CAIX–CAXIV-triple ko mice. This was complemented by immunocytochemical studies of the subcellular localization of CAIV, CAIX and C...

  3. Long-term tillage impacts on soil aggregation and carbon dynamics under wheat-fallow in the central Great Plains

    Science.gov (United States)

    Conventional tillage (CT) winter wheat (Tritucum aestivum L.) with summer fallow (WF) is the predominant cropping system in the central Great Plains. We investigated the effect of 39 yr of different tillage intensities, conventional tillage (CT); moldboard plow (MP); no-tillage (NT); and reduced ti...

  4. Infrared spectral and carbon isotopic characteristics of micro- and macro-diamonds from the Panda kimberlite (Central Slave Craton, Canada)

    Science.gov (United States)

    Melton, G. L.; Stachel, T.; Stern, R. A.; Carlson, J.; Harris, J. W.

    2013-09-01

    One hundred and twenty-one micro-diamonds (Panda kimberlite (Ekati mine, Central Slave Craton, Canada) were analyzed for nitrogen content, nitrogen aggregation state (%B) and platelet and hydrogen peak areas (cm- 2). Micro-diamond nitrogen concentrations range from 2‰, but mostly vary by bearing metasomatic fluid/melt that isotopically evolves as it percolates upward through the lithosphere.

  5. Comparison of carbon uptake estimates from forest inventory and Eddy-Covariance for a montane rainforest in central Sulawesi

    Science.gov (United States)

    Heimsch, Florian; Kreilein, Heiner; Rauf, Abdul; Knohl, Alexander

    2016-04-01

    Rainforests in general and montane rainforests in particular have rarely been studied over longer time periods. We aim to provide baseline information of a montane tropical forest's carbon uptake over time in order to quantify possible losses through land-use change. Thus we conducted a re-inventory of 22 10-year old forest inventory plots, giving us a rare opportunity to quantify carbon uptake over such a long time period by traditional methods. We discuss shortfalls of such techniques and why our estimate of 1.5 Mg/ha/a should be considered as the lower boundary and not the mean carbon uptake per year. At the same location as the inventory, CO2 fluxes were measured with the Eddy-Covariance technique. Measurements were conducted at 48m height with an LI 7500 open-path infrared gas analyser. We will compare carbon uptake estimates from these measurements to those of the more conventional inventory method and discuss, which factors are probably responsible for differences.

  6. LAND-USE CHANGE AND CARBON FLUX BETWEEN 1970S AND 1990S IN CENTRAL HIGHLANDS OF CHIAPAS, MEXICO

    Science.gov (United States)

    We present results of a study in an intensively impacted and highly fragmented landscape in which we apply field-measured carbon (C) density values to land-use/land-cover (LU/LC) statistics to estimate the flux of C between terrestrial ecosystems and the atmosphere from the 1970s...

  7. Coarsely crystalline cryogenic cave carbonate – a new archive to estimate the Last Glacial minimum permafrost depth in Central Europe

    Czech Academy of Sciences Publication Activity Database

    Žák, Karel; Richter, D. K.; Filippi, Michal; Živor, Roman; Deininger, M.; Mangini, A.; Scholz, D.

    2012-01-01

    Roč. 8, č. 6 (2012), s. 1821-1837. ISSN 1814-9324 R&D Projects: GA ČR GAP210/10/1760 Institutional research plan: CEZ:AV0Z30130516 Keywords : caves * cave carbonate * permafrost * Last Glacial Subject RIV: DB - Geology ; Mineralogy Impact factor: 3.556, year: 2012

  8. Effect of Secondary Cooling Conditions on Solidification Structure and Central Macrosegregation in Continuously Cast High-Carbon Rectangular Billet

    Science.gov (United States)

    Zeng, Jie; Chen, Weiqing

    2015-10-01

    Solidification structures of high carbon rectangular billet with a size of 180 mm × 240 mm in different secondary cooling conditions were simulated using cellular automaton-finite element (CAFE) coupling model. The adequacy of the model was compared with the simulated and the actual macrostructures of 82B steel. Effects of the secondary cooling water intensity on solidification structures including the equiaxed grain ratio and the equiaxed grain compactness were discussed. It was shown that the equiaxed grain ratio and the equiaxed grain compactness changed in the opposite direction at different secondary cooling water intensities. Increasing the secondary cooling water intensity from 0.9 or 1.1 to 1.3 L/kg could improve the equiaxed grain compactness and decrease the equiaxed grain ratio. Besides, the industrial test was conducted to investigate the effect of different secondary cooling water intensities on the center carbon macrosegregation of 82B steel. The optimum secondary cooling water intensity was 0.9 L/kg, while the center carbon segregation degree was 1.10. The relationship between solidification structure and center carbon segregation was discussed based on the simulation results and the industrial test.

  9. Changes in ecosystem structure related to the type and extent of woody cover alter carbon dynamics and surface energy exchange in central Texas ecosystems.

    Science.gov (United States)

    Litvak, M. E.; Heilman, J.; McInnes, K.; Owens, K.; Kjelgaard, J.; Thijs, A.

    2006-12-01

    Rangeland ecosystems account for almost two thirds the total land area in Texas. Over the past century, heavy livestock grazing and fire suppression coupled with changes in climate have facilitated the expansion of woody species into rangelands throughout the state. Based in part on the assumption that woody species use more water than their herbaceous counterparts, land managers have used a variety of techniques to reduce tree and shrub abundance to combat the loss of forage for cattle. As a result, the structure of rangelands in Texas is complex, characterized by woody vegetation that is patchy in distribution, and continually changing between grassland, savanna and woodland. Despite the large areal extent of Texas rangelands, very little is known about how the observed changes in ecosystem structure impact carbon cycle dynamics and surface energy exchange. To reduce these uncertainties, we explored explicit relationships between structure and function in these ecosystems by comparing tower-based measurements of carbon and water vapor exchange made simultaneously from July 2004-Dec 2005 across three representative land covers in central Texas: open grassland, savanna with 30% Ashe juniper and honey mesquite cover, and closed canopy woodland. Here we report our findings on what impact the type and pattern of woody plant cover has on biological controls and patterns of carbon sequestration, evapotranspiration, and sensitivity to precipitation pulses. Monthly measurements of leaf level gas exchange, soil respiration rates, herbaceous net ecosystem exchange, and sap flow measurements on dominant woody species were used to augment eddy covariance estimates of ecosystem-atmosphere exchange. The addition of woody species significantly increased carbon sequestration in these ecosystems. Net ecosystem production from July 05-Jun 05 in the grassland, savanna and forest ecosystems was -14 g C m-2, -413 g C m-2, -450 g C m-2, respectively. Evapotranspiration was less

  10. Carbon balance at represenative agroecosystems of Central European Russia with different crops assessed by eddy covariance method

    Science.gov (United States)

    Yaroslavtsev, Alexis; Meshalkina, Joulia; Mazirov, Ilya

    2016-04-01

    Despite the fact that in Russia cropland's soils carbon loses 9 time higher than forest's soils ones (Stolbovoi, 2002), agroecosystems were not given sufficient attention and most of the papers are devoted to forestry and natural ecosystems. Carbon balance was calculated at the Precision Farming Experimental Fields of the Russian Timiryazev State Agricultural University, Moscow, Russia, for two agroecosystems with different crops from the same crop rotation studied for 2 years. The experimental site has a temperate and continental climate and situated in south taiga zone with Arable Sod-Podzoluvisols (Albeluvisols Umbric). Vertical fluxes of carbon dioxide were measured with eddy covariance technique, statistical method to measure and calculate turbulent fluxes within atmospheric boundary layers (Burba, 2013). Crop rotation included potato, winter wheat, barley and vetch and oat mix. Two fields of the same crop rotation were studied in 2013-2014. One of the fields (A) was used in 2013 for barley planting (Hordeum vulgare L.). The field B was in 2013 used for planting together vetch (Vicia sativa L.) and oats (Avena sativa L.). Inversely oats and vetch grass mixt was sown in 2014 on field A. Winter wheat was sown on field A in the very beginning of September. On the second field (B) in 2014 winter wheat occurred from under the snow in the phase of tillering, after harvesting it in mid of July, white mustard (Sinapis alba) was sown for green manure. Carbon uptake (NEE negative values) was registered only for the field with winter wheat and white mustard; perhaps because the two crops were cultivated on the field within one growing season. Three other cases showed CO2 emission. Great difference in 82 g C m‑2 per year in NEE between two fields with vetch and oat mix was related to higher difference in grass yields. NEE for barley field was positive during the whole year; considering only the growing season, NEE for barley was 100 g C m‑2 lower and was negative

  11. Use of dual carbon-chlorine isotope analysis to assess the degradation pathways of 1,1,1-trichloroethane in groundwater.

    Science.gov (United States)

    Palau, Jordi; Jamin, Pierre; Badin, Alice; Vanhecke, Nicolas; Haerens, Bruno; Brouyère, Serge; Hunkeler, Daniel

    2016-04-01

    Compound-specific isotope analysis (CSIA) is a powerful tool to track contaminant fate in groundwater. However, the application of CSIA to chlorinated ethanes has received little attention so far. These compounds are toxic and prevalent groundwater contaminants of environmental concern. The high susceptibility of chlorinated ethanes like 1,1,1-trichloroethane (1,1,1-TCA) to be transformed via different competing pathways (biotic and abiotic) complicates the assessment of their fate in the subsurface. In this study, the use of a dual C-Cl isotope approach to identify the active degradation pathways of 1,1,1-TCA is evaluated for the first time in an aerobic aquifer impacted by 1,1,1-TCA and trichloroethylene (TCE) with concentrations of up to 20 mg/L and 3.4 mg/L, respectively. The reaction-specific dual carbon-chlorine (C-Cl) isotope trends determined in a recent laboratory study illustrated the potential of a dual isotope approach to identify contaminant degradation pathways of 1,1,1-TCA. Compared to the dual isotope slopes (Δδ(13)C/Δδ(37)Cl) previously determined in the laboratory for dehydrohalogenation/hydrolysis (DH/HY, 0.33 ± 0.04) and oxidation by persulfate (∞), the slope determined from field samples (0.6 ± 0.2, r(2) = 0.75) is closer to the one observed for DH/HY, pointing to DH/HY as the predominant degradation pathway of 1,1,1-TCA in the aquifer. The observed deviation could be explained by a minor contribution of additional degradation processes. This result, along with the little degradation of TCE determined from isotope measurements, confirmed that 1,1,1-TCA is the main source of the 1,1-dichlorethylene (1,1-DCE) detected in the aquifer with concentrations of up to 10 mg/L. This study demonstrates that a dual C-Cl isotope approach can strongly improve the qualitative and quantitative assessment of 1,1,1-TCA degradation processes in the field. PMID:26874254

  12. Biological construction of single-walled carbon nanotube electron transfer pathways in dye-sensitized solar cells.

    Science.gov (United States)

    Inoue, Ippei; Watanabe, Kiyoshi; Yamauchi, Hirofumi; Ishikawa, Yasuaki; Yasueda, Hisashi; Uraoka, Yukiharu; Yamashita, Ichiro

    2014-10-01

    We designed and mass-produced a versatile protein supramolecule that can be used to manufacture a highly efficient dye-sensitized solar cell (DSSC). Twelve single-walled carbon-nanotube (SWNT)-binding and titanium-mineralizing peptides were genetically integrated on a cage-shaped dodecamer protein (CDT1). A process involving simple mixing of highly conductive SWNTs with CDT1 followed by TiO2 biomineralization produces a high surface-area/weight TiO2 -(anatase)-coated intact SWNT nanocomposite under environmentally friendly conditions. A DSSC with a TiO2 photoelectrode containing 0.2 wt % of the SWNT-TiO2 nanocomposite shows a current density improvement by 80% and a doubling of the photoelectric conversion efficiency. The SWNT-TiO2 nanocomposite transfers photon-generated electrons from dye molecules adsorbed on the TiO2 to the anode electrode swiftly. PMID:25111295

  13. The impact of land-cover change on carbon and water cycling in the U.S. central plains grasslands

    Science.gov (United States)

    Buck, Tyler

    Using the eddy covariance technique, the impact of land cover variability on carbon and water cycling was examined at three different grasslands in Northeast Kansas. One site 8 km north of Lawrence, Kansas at the Nelson Environmental Study Area (NESA) experiences woody-encroachment and is burned every three years. The remaining two sites are located at the Konza Prairie Biological Station, 8 km south of Manhattan, Kansas. KZU is located in an annual burned, non-grazed watershed in an upland area. K4B experiences woody encroachment and has prescribed burns every four years. Water-use efficiency was used to examine how the carbon and water cycling of these ecosystems respond to land cover change. Analysis suggest that the two grasslands experiencing woody-encroachment (NESA and K4B) show more efficient water use values than the grassland that is not (KZU). This may be due to a possible difference in rooting depth between woody-vegetation and grasses.

  14. Distribution, input pathway and mass inventory of black carbon in sediments of the Gulf of Thailand, SE Asia

    Science.gov (United States)

    Hu, Limin; Shi, Xuefa; Bai, Yazhi; Fang, Yin; Chen, Yingjun; Qiao, Shuqing; Liu, Shengfa; Yang, Gang; Kornkanitnan, Narumol; Khokiattiwong, Somkiat

    2016-03-01

    The coastal margins around Southeast Asia (SE Asia) may serve as an ideal location to study the source-sink process of sedimentary black carbon (BC) because SE Asia has been identified as one of the major BC emission source regions in the world. This study provides an extensive picture of recent regional-scale sedimentary BC sequestration in the Gulf of Thailand (GOT), a tropical marine system in SE Asia. Generally, the sedimentary BC concentrations (0.07-3.99 mg/g) were in the low to moderate ranges of those obtained in other coastal sediments around the world. Regional variability of the BC and its correlation with the sediment grain size and total organic carbon (TOC) content indicated a general hydrodynamic constraint on BC occurrence in the lower Gulf in contrast to the upper Gulf with a more source dependence due to the direct land-based input. BC/TOC% values and the varied BC components (char and soot), as well as their correlations suggested that char was the predominant constituents of sedimentary BC both in the upper and lower Gulf, which could be mainly derived from biomass burning and entered into the nearshore region through direct fluvial transport and surface run-off. The estimated BC burial flux (∼212 μg/cm2/y) and mass inventory (∼200 Gg/y) in the GOT on the hundred-year timescale were of the same order of magnitude compared with other oceanic margins, and thus the tropical shelf sediments from SE Asia could serve as an important sink of land-emitted BC.

  15. The bZIP Transcription Factor Rca1p Is a Central Regulator of a Novel CO2 Sensing Pathway in Yeast

    Czech Academy of Sciences Publication Activity Database

    Cottier, F.; Raymond, M.; Kurzai, O.; Bolstad, M.; Leewattanapasuk, W.; Jiménez-López, M.; Lorenz, M. C.; Sanglard, D.; Váchová, Libuše; Pavelka, N.; Palková, Z.; Mühlschlegel, F. A.

    2012-01-01

    Roč. 8, č. 1 (2012), e1002485. ISSN 1553-7366 R&D Projects: GA MŠk(CZ) LC531 Institutional research plan: CEZ:AV0Z50200510 Keywords : CARBONIC-ANHYDRASE CAN2 * CANDIDA-ALBICANS * SACCHAROMYCES - CEREVISIAE Subject RIV: EE - Microbiology, Virology Impact factor: 9.127, year: 2011

  16. Do the images of neuronal pathways in the human central nervous system show or not feed-back ? : a comparative study in 15 countries

    OpenAIRE

    Clément, Pierre; Mouelhi, Lassaad; Kochkar, Mohamed; Thiaw, Mame Seyni; Ndniaye, Valdiodio; Jeanbart, Paula; Khalil, Iman; Daniel HORVATH; Ferreira, Cláudia; Carvalho, Graça Simões de

    2007-01-01

    In the human brain, the neuronal pathways are networks (which support learning) and work with permanent regulations (feedbacks). However, less than ¼ of illustrations in the analysed school textbooks of 15 countries is showing such regulations. Half of them are concerning the neuro-hormonal control of the reproduction; some are related to the control of the heart rhythm or breathing. Only in some countries the double innervations (gamma and alpha) of striated muscle is taught, and only a few ...

  17. Impact of Soil Conservation Policies on Carbon Sequestration in Agricultural Soils of the Central United States (The)

    OpenAIRE

    Mitchell, Paul D.; P. G. Lakshminarayan; Toshitsugu Otake; Babcock, Bruce A.

    1996-01-01

    To evaluate the impact of conservation policies on soil organic carbon in agricultural soils, the authors link information from the 1992 National Resources Inventory (NRI) database and the extensive physical data on soils and climate from the SOILS5 database. These data serve as input for a biophysical process model calibrated for the conditions prevalent in the study region. Results indicate that reducing soil erosion, rather than removing land from agricultural production, is the most effec...

  18. Multi-frequency observations of seawater carbonate chemistry on the central coast of the western Antarctic Peninsula

    Directory of Open Access Journals (Sweden)

    Julie B. Schram

    2015-07-01

    Full Text Available Assessments of benthic coastal seawater carbonate chemistry in Antarctica are sparse. The studies have generally been short in duration, during the austral spring/summer, under sea ice, or offshore in ice-free water. Herein we present multi-frequency measurements for seawater collected from the shallow coastal benthos on a weekly schedule over one year (May 2012–May 2013, daily schedule over three months (March–May 2013 and semidiurnal schedule over five weeks (March–April 2013. A notable pH increase (max pH = 8.62 occurred in the late austral spring/summer (November–December 2012, coinciding with sea-ice break-out and subsequent increase in primary productivity. We detected semidiurnal variation in seawater pH with a maximum variation of 0.13 pH units during the day and 0.11 pH units during the night. Daily variation in pH is likely related to biological activity, consistent with previous research. We calculated the variation in dissolved inorganic carbon (DIC over each seawater measurement frequency, focusing on the primary DIC drivers in the Palmer Station region. From this, we estimated net biological activity and found it accounts for the greatest variations in DIC. Our seasonal data suggest that this coastal region tends to act as a carbon dioxide source during austral winter months and as a strong sink during the summer. These data characterize present-day seawater carbonate chemistry and the extent to which these measures vary over multiple time scales. This information will inform future experiments designed to evaluate the vulnerability of coastal benthic Antarctic marine organisms to ocean acidification.

  19. Phosphoketolase pathway dominates in Lactobacillus reuteri ATCC 55730 containing dual pathways for glycolysis.

    Science.gov (United States)

    Arsköld, Emma; Lohmeier-Vogel, Elke; Cao, Rong; Roos, Stefan; Rådström, Peter; van Niel, Ed W J

    2008-01-01

    Metabolic flux analysis indicated that the heterofermentative Lactobacillus reuteri strain ATCC 55730 uses both the Embden-Meyerhof pathway (EMP) and phosphoketolase pathway (PKP) when glucose or sucrose is converted into the three-carbon intermediate stage of glycolysis. In all cases studied, the main flux is through the PKP, while the EMP is used as a shunt. In the exponential growth phase, 70%, 73%, and 84% of the flux goes through the PKP in cells metabolizing (i) glucose plus fructose, (ii) glucose alone, and (iii) sucrose alone, respectively. Analysis of the genome of L. reuteri ATCC 55730 confirmed the presence of the genes for both pathways. Further evidence for the simultaneous operation of two central carbon metabolic pathways was found through the detection of fructose-1,6-bisphosphate aldolase, phosphofructokinase, and phosphoglucoisomerase activities and the presence of phosphorylated EMP and PKP intermediates using in vitro 31P NMR. The maximum specific growth rate and biomass yield obtained on glucose were twice as low as on sucrose. This was the result of low ATP levels being present in glucose-metabolizing cells, although the ATP production flux was as high as in sucrose-metabolizing cells due to a twofold increase of enzyme activities in both glycolytic pathways. Growth performance on glucose could be improved by adding fructose as an external electron acceptor, suggesting that the observed behavior is due to a redox imbalance causing energy starvation. PMID:17965151

  20. Cold-seep-driven carbonate deposits at the Central American forearc: contrasting evolution and timing in escarpment and mound settings

    Science.gov (United States)

    Liebetrau, V.; Augustin, N.; Kutterolf, S.; Schmidt, M.; Eisenhauer, A.; Garbe-Schönberg, D.; Weinrebe, W.

    2014-10-01

    Continuous surface cores of cold-seep carbonates were recovered offshore Pacific Nicaragua and Costa Rica from 800 to 1,500-m water depths (Meteor 66/3) in order to decipher their evolution and methane enriched fluid emanation in contrasting geological settings. Cores from the mounds Iguana, Perezoso, Baula V and from the Jaco Scarp escarpment were used for a multi-method approach. For both settings aragonite was revealed as dominant authigenic carbonate phase in vein fillings and matrix cementation, followed by Mg-calcite as second most abundant. This common precipitation process of CaCO3 polymorphs could be ascribed as indirectly driven by chemical changes of the advecting pore water due to anaerobic oxidation of methane. A more direct influence of seep-related microbial activity on the authigenic mineral assemblage in both settings is probably reflected by the observed minor amounts of dolomite and a dolomite-like CaMg carbonate (MgCO3 ~ 42 %). δ13C data of Jaco Scarp samples are significantly lower (-43 to -56 ‰ PDB) than for mound samples (-22 to -36 ‰ PDB), indicating differences in fluid composition and origin. Noteworthy, δ18O values of Scarp samples correlate most closely with the ocean signature at their time of formation. Documenting the archive potential, a high resolution case study of a mound core implies at least 40 changes in fluid supply within a time interval of approximately 14 ky. As most striking difference, the age data indicate a late-stage downward-progressing cementation front for all three mound cap structures (approx. 2-5 cm/ky), but a significantly faster upward carbonate buildup in the bulging sediments on top of the scarp environment (approx. 120 cm/ky). The latter data set leads to the hypothesis of chemoherm carbonate emplacement in accord with reported sedimentation rates until decompression of the advective fluid system, probably caused by the Jaco Scarp landslide and dating this to approximately 13,000 years ago.

  1. Recovery of Carbonate Ecosystems Following the End-Triassic Mass Extinction: Insights from Mercury Anomalies and Their Relationship to the Central Atlantic Magmatic Province

    Science.gov (United States)

    Corsetti, F. A.; Thibodeau, A. M.; Ritterbush, K. A.; West, A. J.; Yager, J. A.; Ibarra, Y.; Bottjer, D. J.; Berelson, W.; Bergquist, B. A.

    2015-12-01

    Recent high-resolution age dating demonstrates that the end-Triassic mass extinction overlapped with the eruption of the Central Atlantic Magmatic Province (CAMP), and the release of CO2 and other volatiles to the atmosphere has been implicated in the extinction. Given the potentially massive release of CO2, ocean acidification is commonly considered a factor in the extinction and the collapse of shallow marine carbonate ecosystems. However, the timing of global marine biotic recovery versus the CAMP eruptions is more uncertain. Here, we use Hg concentrations and Hg/TOC ratios as indicators of CAMP volcanism in continental shelf sediments, the primary archive of faunal data. In Triassic-Jurassic strata, Muller Canyon, Nevada, Hg and Hg/TOC levels are low prior to the extinction, rise sharply in the extinction interval, peak just prior to the appearance of the first Jurassic ammonite, and remain above background in association with a depauperate (low diversity) earliest Jurassic fauna. The return of Hg to pre-extinction levels is associated with a significant pelagic and benthic faunal recovery. We conclude that significant biotic recovery did not begin until CAMP eruptions ceased. Furthermore, the initial benthic recovery in the Muller Canyon section involves the expansion of a siliceous sponge-dominated ecosystem across shallow marine environments, a feature now known from other sections around the world (e.g., Peru, Morocco, Austria, etc.). Carbonate dominated benthic ecosystems (heralded by the return of abundant corals and other skeletal carbonates) did not recover for ~1 million years following the last eruption of CAMP, longer than the typical duration considered for ocean acidification events, implying other factors may have played a role in carbonate ecosystem dynamics after the extinction.

  2. Depletion of the "gamma-type carbonic anhydrase-like" subunits of complex I affects central mitochondrial metabolism in Arabidopsis thaliana.

    Science.gov (United States)

    Fromm, Steffanie; Göing, Jennifer; Lorenz, Christin; Peterhänsel, Christoph; Braun, Hans-Peter

    2016-01-01

    "Gamma-type carbonic anhydrase-like" (CAL) proteins form part of complex I in plants. Together with "gamma carbonic anhydrase" (CA) proteins they form an extra domain which is attached to the membrane arm of complex I on its matrix exposed side. In Arabidopsis two CAL and three CA proteins are present, termed CAL1, CAL2, CA1, CA2 and CA3. It has been proposed that the carbonic anhydrase domain of complex I is involved in a process mediating efficient recycling of mitochondrial CO2 for photosynthetic carbon fixation which is especially important during growth conditions causing increased photorespiration. Depletion of CAL proteins has been shown to significantly affect plant development and photomorphogenesis. To better understand CAL function in plants we here investigated effects of CAL depletion on the mitochondrial compartment. In mutant lines and cell cultures complex I amount was reduced by 90-95% but levels of complexes III and V were unchanged. At the same time, some of the CA transcripts were less abundant. Proteome analysis of CAL depleted cells revealed significant reduction of complex I subunits as well as proteins associated with photorespiration, but increased amounts of proteins participating in amino acid catabolism and stress response reactions. Developmental delay of the mutants was slightly alleviated if plants were cultivated at high CO2. Profiling of selected metabolites revealed defined changes in intermediates of the citric acid cycle and amino acid catabolism. It is concluded that CAL proteins are essential for complex I assembly and that CAL depletion specifically affects central mitochondrial metabolism. PMID:26482706

  3. Intracellular Acetyl Unit Transport in Fungal Carbon Metabolism

    OpenAIRE

    Strijbis, K.; Distel, B.

    2010-01-01

    Acetyl coenzyme A (acetyl-CoA) is a central metabolite in carbon and energy metabolism. Because of its amphiphilic nature and bulkiness, acetyl-CoA cannot readily traverse biological membranes. In fungi, two systems for acetyl unit transport have been identified: a shuttle dependent on the carrier carnitine and a (peroxisomal) citrate synthase-dependent pathway. In the carnitine-dependent pathway, carnitine acetyltransferases exchange the CoA group of acetyl-CoA for carnitine, thereby forming...

  4. Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, Carbon fixation in A. ferrooxidans

    Directory of Open Access Journals (Sweden)

    Esparza Mario

    2010-08-01

    Full Text Available Abstract Background Acidithiobacillus ferrooxidans is chemolithoautotrophic γ-proteobacterium that thrives at extremely low pH (pH 1-2. Although a substantial amount of information is available regarding CO2 uptake and fixation in a variety of facultative autotrophs, less is known about the processes in obligate autotrophs, especially those living in extremely acidic conditions, prompting the present study. Results Four gene clusters (termed cbb1-4 in the A. ferrooxidans genome are predicted to encode enzymes and structural proteins involved in carbon assimilation via the Calvin-Benson-Bassham (CBB cycle including form I of ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO, EC 4.1.1.39 and the CO2-concentrating carboxysomes. RT-PCR experiments demonstrated that each gene cluster is a single transcriptional unit and thus is an operon. Operon cbb1 is divergently transcribed from a gene, cbbR, encoding the LysR-type transcriptional regulator CbbR that has been shown in many organisms to regulate the expression of RubisCO genes. Sigma70-like -10 and -35 promoter boxes and potential CbbR-binding sites (T-N11-A/TNA-N7TNA were predicted in the upstream regions of the four operons. Electrophoretic mobility shift assays (EMSAs confirmed that purified CbbR is able to bind to the upstream regions of the cbb1, cbb2 and cbb3 operons, demonstrating that the predicted CbbR-binding sites are functional in vitro. However, CbbR failed to bind the upstream region of the cbb4 operon that contains cbbP, encoding phosphoribulokinase (EC 2.7.1.19. Thus, other factors not present in the assay may be required for binding or the region lacks a functional CbbR-binding site. The cbb3 operon contains genes predicted to encode anthranilate synthase components I and II, catalyzing the formation of anthranilate and pyruvate from chorismate. This suggests a novel regulatory connection between CO2 fixation and tryptophan biosynthesis. The presence of a form II Rubis

  5. New insights in the use of carbon isotopes as tracers of DOC sources and water pathways in headwater catchments

    Science.gov (United States)

    Lambert, Thibault; Pierson-Wickmann, Anne-Catherine; Gruau, Gérard; Petitjean, Patrice; Thibault, Jean-Noël; Jeanneau, Laurent

    2013-04-01

    Despite the significant importance of dissolved organic carbon (DOC) in aquatics ecosystems, the processes controlling DOC delivery to stream waters at the catchment scale are still poorly understood, in particular with regards to the relative importance of riparian versus upland soils as DOC sources. In this respect, the stable carbon isotopic composition of DOC (δ13CDOC) appears to be a promising tool as different δ13CDOC values are anticipated between wetland and upland soil DOC, because of differences in soil oxygenation, soil humidity and soil organic matter degradation scheme However, care must be exercised because of the possible occurrence of seasonal variations in the δ13CDOC values of both riparian and upland DOC , and because also of the possible mixing of DOC coming from spatially distinct sources. The markedly different isotopic patterns obtained during high resolution monitoring ( 2 δ units), while others showed no, or much more restricted isotopic variations. A comparison of these results with previously published data revealed that this temporal variability of intra-storm δ13CDOC values is the exact transposition of the temporal variability of δ13CDOC values that was found in the riparian soil waters of this catchment during the same period. The latter variability has been shown to arise from the combined effect of changes in the production mechanisms and ultimate sources of riparian DOC and of the lateral input in the riparian domains of an isotopically heavier DOC component coming from more upland areas. Overall, results from this study confirm that upland domains may be significant contributors of stream DOC flux in headwater catchments. They also show that upland soils behave as a size-limited reservoir with respect to DOC production, whereas more highly productive soils in the wetland domains act as a near-infinite reservoir. Through this study, we show that the isotopic composition of DOC is an extremely powerful tool for tracing DOC

  6. Internalization of externalities in the generation costs of electric power centrals of carbon, combined cycle and nuclear; Internalizacion de externalidades en los costos de generacion de centrales electricas de carbon, ciclo combinado y nucleares

    Energy Technology Data Exchange (ETDEWEB)

    Gomez R, M.C. [Universidad Anahuac del Norte (Mexico); Palacios H, J.; Ramirez S, R.; Alonso V, G. [ININ, Carretera Mexico-Toluca Km. 36.5 Ocoyoacac 52750 Edo. de Mexico (Mexico)]. e-mail: fgrivera@avantel.net

    2007-07-01

    The technologies of electric power generation that use fossil fuels, they incorporate in the Even Total Cost of Generation (CTNG) only the direct costs of generation (investment, fuel costs, operation costs and maintenance). nevertheless, the nuclear energy incorporates besides the direct costs, the externalities that causes to the human health and the environment. In this work the CTNG is calculated that incorporates the externalities, of a thermoelectric power station of coal, a plant of combined cycle and of four reactors of Generation III (ABWR, ACR, AP1000 and EPR). The obtained results show that the nuclear power station has smaller CTNG that the technologies that use fossil fuels. It is important to stand out that they are only considering the externalities of the stage of electricity generation, for what the mining phase and transport of the fuel toward the central are not considered in the present document. (Author)

  7. Assessment of Functional Disturbances in the Central Nervous System Caused by Severe Carbon Monoxide Poisoning in Rats.

    Science.gov (United States)

    Tolkach, P G; Basharin, V A; Grebenyuk, A N

    2016-02-01

    An experimental model was developed for assessment of disturbances in CNS functions of laboratory animals caused by severe carbon monoxide poisoning. Normalization of the state of experimental rats after acute poisoning was accompanied by the development of cognitive abnormalities. Disturbances in the long-term memory were observed on days 1 and 14 after CO poisoning, while abnormalities in the short-term memory developed on days 1, 7, and 14. Learning impairment were recorded on day 8, while the training course began on day 7. PMID:26906199

  8. Central composite design and genetic algorithm applied for the optimization of ultrasonic-assisted removal of malachite green by ZnO Nanorod-loaded activated carbon.

    Science.gov (United States)

    Ghaedi, M; Azad, F Nasiri; Dashtian, K; Hajati, S; Goudarzi, A; Soylak, M

    2016-10-01

    Maximum malachite green (MG) adsorption onto ZnO Nanorod-loaded activated carbon (ZnO-NR-AC) was achieved following the optimization of conditions, while the mass transfer was accelerated by ultrasonic. The central composite design (CCD) and genetic algorithm (GA) were used to estimate the effect of individual variables and their mutual interactions on the MG adsorption as response and to optimize the adsorption process. The ZnO-NR-AC surface morphology and its properties were identified via FESEM, XRD and FTIR. The adsorption equilibrium isotherm and kinetic models investigation revealed the well fit of the experimental data to Langmuir isotherm and pseudo-second-order kinetic model, respectively. It was shown that a small amount of ZnO-NR-AC (with adsorption capacity of 20mgg(-1)) is sufficient for the rapid removal of high amount of MG dye in short time (3.99min). PMID:27318150

  9. T tubules and surface membranes provide equally effective pathways of carbonic anhydrase-facilitated lactic acid transport in skeletal muscle.

    Directory of Open Access Journals (Sweden)

    Janine Hallerdei

    Full Text Available We have studied lactic acid transport in the fast mouse extensor digitorum longus muscles (EDL by intracellular and cell surface pH microelectrodes. The role of membrane-bound carbonic anhydrases (CA of EDL in lactic acid transport was investigated by measuring lactate flux in muscles from wildtype, CAIV-, CAIX- and CAXIV-single ko, CAIV-CAXIV double ko and CAIV-CAIX-CAXIV-triple ko mice. This was complemented by immunocytochemical studies of the subcellular localization of CAIV, CAIX and CAXIV in mouse EDL. We find that CAXIV and CAIX single ko EDL exhibit markedly but not maximally reduced lactate fluxes, whereas triple ko and double ko EDL show maximal or near-maximal inhibition of CA-dependent lactate flux. Interpretation of the flux measurements in the light of the immunocytochemical results leads to the following conclusions. CAXIV, which is homogeneously distributed across the surface membrane of EDL fibers, facilitates lactic acid transport across this membrane. CAIX, which is associated only with T tubular membranes, facilitates lactic acid transport across the T tubule membrane. The removal of lactic acid from the lumen of T tubuli towards the interstitial space involves a CO2-HCO3- diffusional shuttle that is maintained cooperatively by CAIX within the T tubule and, besides CAXIV, by the CAIV, which is strategically located at the opening of the T tubules. The data suggest that about half the CA-dependent muscular lactate flux occurs across the surface membrane, while the other half occurs across the membranes of the T tubuli.

  10. Rhizobium leguminosarum bv. viciae 3841 Adapts to 2,4-Dichlorophenoxyacetic Acid with "Auxin-Like" Morphological Changes, Cell Envelope Remodeling and Upregulation of Central Metabolic Pathways.

    Directory of Open Access Journals (Sweden)

    Supriya V Bhat

    Full Text Available There is a growing need to characterize the effects of environmental stressors at the molecular level on model organisms with the ever increasing number and variety of anthropogenic chemical pollutants. The herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, as one of the most widely applied pesticides in the world, is one such example. This herbicide is known to have non-targeted undesirable effects on humans, animals and soil microbes, but specific molecular targets at sublethal levels are unknown. In this study, we have used Rhizobium leguminosarum bv. viciae 3841 (Rlv as a nitrogen fixing, beneficial model soil organism to characterize the effects of 2,4-D. Using metabolomics and advanced microscopy we determined specific target pathways in the Rlv metabolic network and consequent changes to its phenotype, surface ultrastructure, and physical properties during sublethal 2,4-D exposure. Auxin and 2,4-D, its structural analogue, showed common morphological changes in vitro which were similar to bacteroids isolated from plant nodules, implying that these changes are related to bacteroid differentiation required for nitrogen fixation. Rlv showed remarkable adaptation capabilities in response to the herbicide, with changes to integral pathways of cellular metabolism and the potential to assimilate 2,4-D with consequent changes to its physical and structural properties. This study identifies biomarkers of 2,4-D in Rlv and offers valuable insights into the mode-of-action of 2,4-D in soil bacteria.

  11. Influences of riverine and upwelling waters on the coastal carbonate system off Central Chile and their ocean acidification implications

    Science.gov (United States)

    Vargas, Cristian A.; Contreras, Paulina Y.; Pérez, Claudia A.; Sobarzo, Marcus; Saldías, Gonzalo S.; Salisbury, Joe

    2016-06-01

    A combined data set, combining data from field campaigns and oceanographic cruises, was used to ascertain the influence of both river discharges and upwelling processes, covering spatial and temporal variation in dissolved inorganic carbon (DIC) and aragonite saturation state. This work was conducted in one of the most productive river-influenced upwelling areas in the South Pacific coasts (36°S). Additionally, further work was also conducted to ascertain the contribution of different DIC sources, influencing the dynamics of DIC along the land-ocean range. Six sampling campaigns were conducted across seven stations at the Biobío River basin, covering approximately 200 km. Three research cruises were undertaken simultaneously, covering the adjacent continental shelf, including 12 sampling stations for hydrographic measurements. Additionally, six stations were also sampled for chemical analyses, covering summer, winter, and spring conditions over 2010 and 2011. Our results evidenced that seaward extent of the river plume was more evident during the winter field campaign, when highest riverine DIC fluxes were observed. The carbonate system along the river-ocean continuum was very heterogeneous varying over spatial and temporal scales. High DIC and pCO2 were observed in river areas with larger anthropogenic effects. CO2 supersaturation at the river plume was observed during all campaigns due to the influence of low pH river waters in winter/spring and high-pCO2 upwelling waters in summer. δ13CDIC evidenced that main DIC sources along the river and river plume corresponded to the respiration of terrestrial organic matter. We have linked this natural process to the carbonate saturation on the adjacent river-influenced coastal area, suggesting that Ωaragonite undersaturation in surface/subsurface waters is largely modulated by the influence of both river discharge and coastal upwelling events in this productive coastal area. Conditions of low Ωaragonite might impact

  12. Outdoor near-roadway, community and residential pollen, carbon dioxide and particulate matter measurements in the urban core of an agricultural region in central CA

    Science.gov (United States)

    Shendell, Derek G.; Therkorn, Jennifer H.; Yamamoto, Naomichi; Meng, Qingyu; Kelly, Sarah W.; Foster, Christine A.

    2012-04-01

    We can control asthma through proper clinical and environmental management and education. The U.S. population is growing, urbanizing and aging; seniors of low-to-middle income families are working and living longer. We conducted community-based participatory research in Visalia, Tulare County, California with a prospective, cross-sectional repeated measures design and quantitative and qualitative process; home environment and health-related outcomes data were collected. In this paper, we presented results of the air quality sampling-pollen, carbon dioxide (CO2) and particulate matter (PM) outdoors away from most major sources (agricultural fields, large pollinating trees, etc)-at a community central site close to a mobile line source and participant homes in the cooling season, July, 2009. Weather was hot and dry with light winds; diurnal variation ranged between 65-107 °F (18-42 °C) and 12-76% relative humidity at the study's central site. Co-located active (reference) and passive (PAAS) samplers were used for pollen; passive monitoring for CO2 (Telaire 7001) and active sampling for PM were conducted. Overall, we observed spatial variability in CO2, fine PM (PM2.5), and pollen counts. Weekday and study week average CO2 and PM2.5 concentrations were higher near study homes compared to central site sampling points, but peak measures and overnight/pre-dawn time period averages were elevated at the central site. Pollen counts were typically lower at homes-even if grass, trees, flowers or potted plants were present-compared to the central site closer to and generally downwind from commercial agricultural tree production. Data are new; the nine-county San Joaquin Valley has one pollen count station in the national network, and two of four government outdoor air monitoring stations in the county are in national parks. We suggest-given poor air quality in large part due to PM-adding routine pollen counts to regional/state agency air monitoring sites and more CO2 and PM

  13. Carbonate Sequence Stratigraphy of a Back-Arc Basin: A Case Study of the Qom Formation in the Kashan Area, Central Iran

    Institute of Scientific and Technical Information of China (English)

    XU Guoqiang; ZHANG Shaonan; LI Zhongdong; SONG Lailiang; LIU Huimin

    2007-01-01

    The Qom Formation comprises Oligo-Miocene deposits from a marine succession distributed in the Central Basin of Iran. It is composed of five members designated as A-F. Little previous work exists on the sequence stratigraphy. Based on an integrated study of sequence stratigraphy with outcrop data, wells and regional seismic profiles, the Qom Formation is interpreted as a carbonate succession deposited in a mid-Tertiary back-arc basin. There are two second-order sequences (designated as SS1 and SS2) and five third-order sequences (designated as S1-S5). Five distinct systems tracts including transgressive, highstand, forced regressive, slope margin and lowstand have been recognized. The relationship between the sequences and lithologic sub-units has been collated and defined (S1 to S5 individually corresponding to A-C1, C2-C4, D-E, the lower and upper portions of F); a relative sea level change curve and the sequence stratigraphic framework have been established and described in detail. The coincidence of relative sea level change between that of the determined back-arc basin and the world indicates that the sedimentary cycles of the Qom Formation are mainly controlled by eustatic cycles. The variable combination of the systems tracts and special tectonic-depositional setting causally underpin multiple sequence stratigraphic framework styles seen in the carbonates of the back-arc basin revealing: (1) a continental margin basin that developed some form of barrier, characterized by the development of multiple cycles of carbonate-evaporites; (2) a flat carbonate ramp, which occurred on the southern shelf formed by the lack of clastic supply from nearby magmatic islands plus mixed siliciclastics and carbonates that occurred on the northern shelf due to a sufficient clastics supply from the land; and (3) a forced regressive stratigraphic stacking pattern that occured on the southern shelf and in basin lows due to the uplifting of the southern shelf. Thick and widespread

  14. Estimating Aboveground Forest Carbon Stock of Major Tropical Forest Land Uses Using Airborne Lidar and Field Measurement Data in Central Sumatra

    Science.gov (United States)

    Thapa, R. B.; Watanabe, M.; Motohka, T.; Shiraishi, T.; shimada, M.

    2013-12-01

    Tropical forests are providing environmental goods and services including carbon sequestration, energy regulation, water fluxes, wildlife habitats, fuel, and building materials. Despite the policy attention, the tropical forest reserve in Southeast Asian region is releasing vast amount of carbon to the atmosphere due to deforestation. Establishing quality forest statistics and documenting aboveground forest carbon stocks (AFCS) are emerging in the region. Airborne and satellite based large area monitoring methods are developed to compliment conventional plot based field measurement methods as they are costly, time consuming, and difficult to implement for large regions. But these methods still require adequate ground measurements for calibrating accurate AFCS model. Furthermore, tropical region comprised of varieties of natural and plantation forests capping higher variability of forest structures and biomass volumes. To address this issue and the needs for ground data, we propose the systematic collection of ground data integrated with airborne light detection and ranging (LiDAR) data. Airborne LiDAR enables accurate measures of vertical forest structure, including canopy height and volume demanding less ground measurement plots. Using an appropriate forest type based LiDAR sampling framework, structural properties of forest can be quantified and treated similar to ground measurement plots, producing locally relevant information to use independently with satellite data sources including synthetic aperture radar (SAR). In this study, we examined LiDAR derived forest parameters with field measured data and developed general and specific AFCS models for tropical forests in central Sumatra. The general model is fitted for all types of natural and plantation forests while the specific model is fitted to the specific forest type. The study region consists of natural forests including peat swamp and dry moist forests, regrowth, and mangrove and plantation forests

  15. Effects of tillage and nitrogen fertilizers on CH4 and CO2 emissions and soil organic carbon in paddy fields of central China.

    Directory of Open Access Journals (Sweden)

    Li Cheng-Fang

    Full Text Available Quantifying carbon (C sequestration in paddy soils is necessary to help better understand the effect of agricultural practices on the C cycle. The objective of the present study was to assess the effects of tillage practices [conventional tillage (CT and no-tillage (NT] and the application of nitrogen (N fertilizer (0 and 210 kg N ha(-1 on fluxes of CH(4 and CO(2, and soil organic C (SOC sequestration during the 2009 and 2010 rice growing seasons in central China. Application of N fertilizer significantly increased CH(4 emissions by 13%-66% and SOC by 21%-94% irrespective of soil sampling depths, but had no effect on CO(2 emissions in either year. Tillage significantly affected CH(4 and CO(2 emissions, where NT significantly decreased CH(4 emissions by 10%-36% but increased CO(2 emissions by 22%-40% in both years. The effects of tillage on the SOC varied with the depth of soil sampling. NT significantly increased the SOC by 7%-48% in the 0-5 cm layer compared with CT. However, there was no significant difference in the SOC between NT and CT across the entire 0-20 cm layer. Hence, our results suggest that the potential of SOC sequestration in NT paddy fields may be overestimated in central China if only surface soil samples are considered.

  16. Effects of tillage and nitrogen fertilizers on CH4 and CO2 emissions and soil organic carbon in paddy fields of central China.

    Science.gov (United States)

    Cheng-Fang, Li; Dan-Na, Zhou; Zhi-Kui, Kou; Zhi-Sheng, Zhang; Jin-Ping, Wang; Ming-Li, Cai; Cou-Gui, Cao

    2012-01-01

    Quantifying carbon (C) sequestration in paddy soils is necessary to help better understand the effect of agricultural practices on the C cycle. The objective of the present study was to assess the effects of tillage practices [conventional tillage (CT) and no-tillage (NT)] and the application of nitrogen (N) fertilizer (0 and 210 kg N ha(-1)) on fluxes of CH(4) and CO(2), and soil organic C (SOC) sequestration during the 2009 and 2010 rice growing seasons in central China. Application of N fertilizer significantly increased CH(4) emissions by 13%-66% and SOC by 21%-94% irrespective of soil sampling depths, but had no effect on CO(2) emissions in either year. Tillage significantly affected CH(4) and CO(2) emissions, where NT significantly decreased CH(4) emissions by 10%-36% but increased CO(2) emissions by 22%-40% in both years. The effects of tillage on the SOC varied with the depth of soil sampling. NT significantly increased the SOC by 7%-48% in the 0-5 cm layer compared with CT. However, there was no significant difference in the SOC between NT and CT across the entire 0-20 cm layer. Hence, our results suggest that the potential of SOC sequestration in NT paddy fields may be overestimated in central China if only surface soil samples are considered. PMID:22574109

  17. Carbon cycle dynamics and solar activity embedded in a high-resolution 14C speleothem record from Belize, Central America

    Science.gov (United States)

    Lechleitner, Franziska A.; Breitenbach, Sebastian F. M.; McIntyre, Cameron; Asmerom, Yemane; Prufer, Keith M.; Polyak, Victor; Culleton, Brendan J.; Kennett, Douglas J.; Eglinton, Timothy I.; Baldini, James U. L.

    2015-04-01

    Speleothem 14C has recently emerged as a potentially powerful proxy for climate reconstruction. Several studies have highlighted the link between karst hydrology and speleothem 14C content, and a number of possible causes for this relationship have been proposed, such as dripwater flow dynamics in the karst and changes in soil organic matter (SOM) turnover time (e.g. Griffiths et al., 2012). Here we present a high resolution 14C record for a stalagmite (YOK-I) from Yok Balum cave in southern Belize, Central America. YOK-I grew continuously over the last 2000 years, and has been dated very precisely with the U-Th method (40 dates, mean uncertainty ventilation and hydrologic resilience to seismic activity, Journal of Cave and Karst Studies

  18. Effects of wind farm construction on concentrations and fluxes of dissolved organic carbon and suspended sediment from peat catchments at Braes of Doune, central Scotland

    Directory of Open Access Journals (Sweden)

    I. Grieve

    2008-07-01

    Full Text Available This paper assesses the impacts of disturbance associated with the construction of a wind farm on fluxes of dissolved organic carbon (DOC and suspended sediment from a blanket peat catchment in central Scotland during the period immediately following completion of construction. Six streams draining the site were sampled on six dates from October 2006, when construction was completed, and an additional three control streams to the west of the site were sampled on the same dates. Turbidity and stage were recorded semi-continuously in the two largest streams (one disturbed and one control, which were also sampled during storm events. Absorbance (400 nm and DOC concentrations were determined on all samples, and suspended sediment was determined on the event samples. Absorbance and DOC were closely correlated in both the disturbed and undisturbed streams, with slightly greater absorbance per unit DOC in the disturbed streams. DOC concentrations in disturbed tributaries were always greater than those in undisturbed streams, with mean differences ranging from 2 to around 5 mg L-1. DOC and stage were positively correlated during events with maximum concentrations in excess of 30 mg L 1 at peak flow. Suspended sediment concentrations were markedly elevated in the disturbed stream with maximum concentrations at peak flow some 4–5 times greater than in the control. The colour of the sediment suggested that it was highly organic in nature at peak flow, and suspended particulate organic carbon represented a further loss of C from the site. Using flow-weighted mean DOC concentrations calculated for the storms monitored in autumn 2007, dissolved carbon losses can be estimated for the catchments of the disturbed and control streams. From these data the additional DOC loss related to disturbance associated with the wind farm is estimated at 5 g m-2.

  19. Interaction between ultrapotassic magmas and carbonate rocks: Evidence from geochemical and isotopic (Sr, Nd, O) compositions of granular lithic clasts from the Alban Hills Volcano, Central Italy

    Science.gov (United States)

    Peccerillo, Angelo; Federico, Marcella; Barbieri, Mario; Brilli, Mauro; Wu, Tsai-Wan

    2010-05-01

    Magma-carbonate rock interaction is investigated through a geochemical and Sr-Nd-O isotope study of granular lithic clasts ( ejecta) from the Alban Hills ultrapotassic volcano, Central Italy. Some samples (Group-1) basically represent intrusive equivalents of Alban Hills magmas. A few samples (Group-2) are ultramafic, have high MgO (˜30 to 40 wt%) and δ 18O‰, and originated by accumulation of mafic phases that crystallised from ultrapotassic melts during assimilation of dolomitic rocks. Group-3 ejecta consist of dominant K-feldspar, and show major element compositions similar to phonolites, which, however, are absent among the Alban Hills volcanics. Finally, another group (Group-4) contains corroded K-feldspars, surrounded by a microgranular to porphyritic matrix, made of igneous minerals (K-feldspar, foids, clinopyroxene, phlogopite) plus wollastonite, garnet, and some cuspidine. Group-4 ejecta are depleted in SiO 2 and enriched in CaO with respect to Group-3. The analysed ejecta have similar 143Nd/ 144Nd (0.51204-0.51217) as the Alban Hills lavas, whereas 87Sr/ 86Sr (0.70900-0.71067) is similar to lower. Whole rocks δ 18O‰ ranges from +7.0 to +13.2, reaching maximum values in ultramafic samples. A positive correlation with CaO is observed in single rock groups. Large Ion Lithophile Element (LILE) abundances and REE fractionation are generally high, and extreme values of Th, U and LREE are found in some Group-3 and Group-4 rocks. Mineralogical, petrological and geochemical data reveal extensive interaction between magma and carbonate wall rocks, involving both dolostones and limestones. These processes had dramatic effects on magma compositions, especially on phonolites, which were transformed to foidites. Evidence of such a process is found in Group-4 samples, in which K-feldspar is observed to react with a matrix that represents strongly undersaturated melts formed by interaction between silicate magma and carbonates. Trace element data also testify to a

  20. Surface circulation patterns and the pathways of sea surface carbon dioxide (CO2 off northern Chile (~27.5° S between 30 and 10 kyr BP: global and/or local forcing?

    Directory of Open Access Journals (Sweden)

    R. Torres

    2010-03-01

    Full Text Available We present a reconstruction of past changes in partial pressure of CO2 (pCO2 from northern Chile (~27° S, between 10 and 30 kyr BP, based on carbon isotope composition of C37:2-alkenone. The high-pCO2 during the entire time series indicates that northern Chile upwelling system has been a permanent source of CO2 to the atmosphere. The multiproxy reconstruction suggests that the CO2 outgassing and sequestration pathways were modulated by local and global mechanisms. During global glacial conditions, an enhanced coastal upwelling forcing resulted in high-availability of deep water macronutrients and a CO2-supersaturated water column, which combined with high-inputs of iron from the continent, intensified the carbon sequestration pathway of the biological pump, through diatom biomass export. During the deglacial, a decrease in the upwelling forcing, an increment in water column stability and reduced continental inputs of iron are consistent with a larger role of calcifying organisms in the plankton assemblage in terms of carbon sequestration pathway through the carbonate system.

  1. First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough

    Science.gov (United States)

    Sun, Qing-lei; Zeng, Zhi-gang; Chen, Shuai; Sun, Li

    2016-01-01

    Alvinocaris longirostris is a species of shrimp existing in the hydrothermal fields of Okinawa Trough. To date the structure and function of the microbial community associated with A. longirostris are essentially unknown. In this study, by employment of the techniques of high through-put sequencing and clone library construction and analysis, we compared for the first time the community structures and metabolic profiles of microbes associated with the gill and gut of A. longirostris in a hydrothermal field of Okinawa Trough. Fourteen phyla were detected in the gill and gut communities, of which 11 phyla were shared by both tissues. Proteobacteria made up a substantial proportion in both tissues, while Firmicutes was abundant only in gut. Although gill and gut communities were similar in bacterial diversities, the bacterial community structures in these two tissues were significantly different. Further, we discovered for the first time the existence in the gill and gut communities of A. longirostris the genes (cbbM and aclB) encoding the key enzymes of Calvin-Benson-Bassham (CBB) cycle and the reductive tricarboxylic acid (rTCA) cycle, and that both cbbM and aclB were significantly more abundant in gill than in gut. Taken together, these results provide the first evidence that at least two carbon fixation pathways are present in both the gill and the gut communities of A. longirostris, and that the communities in different tissues likely differ in autotrophic productivity. PMID:27111851

  2. Pathways and regulation of carbon, sulfur and energy transfer in marine sediments overlying methane gas hydrates on the Opouawe Bank (New Zealand)

    Science.gov (United States)

    Dale, A. W.; Sommer, S.; Haeckel, M.; Wallmann, K.; Linke, P.; Wegener, G.; Pfannkuche, O.

    2010-10-01

    This study combines sediment geochemical analysis, in situ benthic lander deployments and numerical modeling to quantify the biogeochemical cycles of carbon and sulfur and the associated rates of Gibbs energy production at a novel methane seep. The benthic ecosystem is dominated by a dense population of tube-building ampharetid polychaetes and conspicuous microbial mats were unusually absent. A 1D numerical reaction-transport model, which allows for the explicit growth of sulfide and methane oxidizing microorganisms, was tuned to the geochemical data using a fluid advection velocity of 14 cm yr -1. The fluids provide a deep source of dissolved hydrogen sulfide and methane to the sediment with fluxes equal to 4.1 and 18.2 mmol m -2 d -1, respectively. Chemosynthetic biomass production in the subsurface sediment is estimated to be 2.8 mmol m -2 d -1 of C biomass. However, carbon and oxygen budgets indicate that chemosynthetic organisms living directly above or on the surface sediment have the potential to produce 12.3 mmol m -2 d -1 of C biomass. This autochthonous carbon source meets the ampharetid respiratory carbon demand of 23.2 mmol m -2 d -1 to within a factor of 2. By contrast, the contribution of photosynthetically-fixed carbon sources to ampharetid nutrition is minor (3.3 mmol m -2 d -1 of C). The data strongly suggest that mixing of labile autochthonous microbial detritus below the oxic layer sustains high measured rates of sulfate reduction in the uppermost 2 cm of the sulfidic sediment (100-200 nmol cm -3 d -1). Similar rates have been reported in the literature for other seeps, from which we conclude that autochthonous organic matter is an important substrate for sulfate reducing bacteria in these sediment layers. A system-scale energy budget based on the chemosynthetic reaction pathways reveals that up to 8.3 kJ m -2 d -1 or 96 mW m -2 of catabolic (Gibbs) energy is dissipated at the seep through oxidation reactions. The microorganisms mediating sulfide

  3. High resolution leaf wax carbon and hydrogen isotopic record of late Holocene paleoclimate in arid Central Asia

    Directory of Open Access Journals (Sweden)

    B. Aichner

    2014-11-01

    precipitation (including snow-melt and thus leaf wax δ D values must also respond to shifts in the proportion of moisture derived from westerly storms during late winter/early spring. Downcore results give evidence for a gradual shift to cooler and wetter climates between 3.5 and 2.5 cal kyr BP, interrupted by a warm/dry episode between 3.0–2.7 kyr BP. Further cool and wet episodes occur between 1.9–1.5 kyr BP and between 0.6–0.1 kyr BP, the latter coeval with the Little Ice Age. Warm and dry episodes between 2.5–1.9 kyr BP and 1.5–0.6 kyr BP coincide with the Roman Warm Period and Medieval Climate Anomaly, respectively. Finally, we find a drying tend in recent decades. Regional comparisons lead us to infer that the strength and position of the Westerlies, and wider Northern Hemispheric climate dynamics control climatic shifts in arid Central Asia.

  4. The Effects of Detritus Input on Soil Organic Matter Content and Carbon Dioxide Emission in a Central European Deciduous Forest

    Directory of Open Access Journals (Sweden)

    FEKETE, István

    2011-01-01

    Full Text Available A major objective of our research was to survey soil biological activity and organic mattercontent reduction in a Central European oak forest during treatments of various detritus inputs within theSíkfkút DIRT (Detritus Input and Removal Treatments Project. Beside the control, three detritusremoval and two detritus duplication treatments were applied. Our examinations have proven that soilorganic matter content declined relatively fast in detritus removal treatments. The reduction wasespecially remarkable in root detritus removal treatments, where – due to the lack of transpiration – soilswere moister during the whole year than in the other treatments. The higher moisture content, despite ofthe reduction of detritus input, produced an intense soil respiration. This can be explained by the fact thatdecomposing organisms have increased the use of soil organic matter. Detritus input reduction had asignificantly greater effect on soil respiration and organic matter content than detritus input duplicationof the same extent. The latter did not cause any significant change compared to the control.

  5. Carbon and nutrients output by harvesting Acacia mearnsii De Wild to four years old at the central Depression, RS

    Directory of Open Access Journals (Sweden)

    Marcos Vinicius Winckler Caldeira

    2014-03-01

    Full Text Available The aim of this study was to estimate the content and export of carbon, macro and micronutrients in the different components (leaf, alive and dead branch, bark, wood and roots of the Acacia mearnsii trees with 4 years old of age in Arroio dos Ratos-RS, in order to provide the forest management, based on the criterion of minimum export of nutrients. After determining the diameter distribution and its division into diameter classes (seven classes, three trees were selected in each classes. Using the 21 trees felled, the biomass of different components of trees was stimated. It was observed that wood, which represents about 64% of the biomass, contains 50% of accumulated Ca, 21% N, 27% P, 30% K, 37% Mg, 45% of S, 25% B, 37% Cu, 9% Fe, 26% Mg and 41% Zn. While the leaf, which represents 3% of total biomass, contains 20; 18; 12; 5; 10; 10; 17; 18; 5; 19 and 6% N, P, K, Ca, Mg, S, B, Cu, Fe, Mg and Zn, respectively. The export of nutrients from the crops of A. mearnsii can be minimized with retention of crop residues on the soil removal only of wood and bark.

  6. Demise of the northern Tethyan Urgonian carbonate platform and subsequent transition towards pelagic conditions: The sedimentary record of the Col de la Plaine Morte area, central Switzerland

    Science.gov (United States)

    Föllmi, Karl B.; Gainon, François

    2008-04-01

    The sedimentary succession of the Col de la Plaine Morte area (Helvetic Alps, central Switzerland) documents the disappearance of the northern Tethyan Urgonian platform in unprecedented detail and suggests stepwise platform demise, with each drowning phase documented by erosion and phosphogenesis. The first identified drowning phase terminated Urgonian carbonate production in a predominantly photozoan mode. Using a correlation of the whole-rock δ13C record with the well-dated record from SE France, its age is inferred to as Middle Early Aptian (near the boundary between the weissi and deshayesi zones). A subsequent drowning phase is dated by ammonites and by a correlation of the whole-rock δ13C record as Late Early Aptian (late deshayesi to early furcata zone). A third drowning phase provides an ammonite-based age of Early Late Aptian ( subnodosocostatum and melchioris zones) and is part of a widely recognized phase of sediment condensation and phosphogenesis, which is dated as latest Early to Middle Late Aptian (late furcata zone to near the boundary of the melchioris and nolani zones). The fourth and final drowning phase started in the latest Aptian ( jacobi zone) as is also indicated by ammonite findings at the Col de la Plaine Morte. The phases of renewed platform-carbonate production intervening between the drowning phases were all in a heterozoan mode. During the ultimate drowning phase, phosphogenesis continued until the Early Middle Albian, whereas condensation processes lasted until the Middle Turonian. Coverage of the external margin of the drowned Urgonian platform by a drape of pelagic carbonates started only in the Late Turonian. During the Santonian, the external part of the drowned platform underwent normal faulting and saw the re-exposure of already lithified Urgonian carbonates at the seafloor. Based on the here-inferred ages, the first drowning phase just precedes oceanic anoxic episode 1a (OAE 1a or "selli event") in time, and the second

  7. Measuring and modeling C flux rates through the central metabolic pathways in microbial communities using position-specific 13C-labeled tracers

    Science.gov (United States)

    Dijkstra, P.; van Groenigen, K.; Hagerty, S.; Salpas, E.; Fairbanks, D. E.; Hungate, B. A.; KOCH, G. W.; Schwartz, E.

    2012-12-01

    The production of energy and metabolic precursors occurs in well-known processes such as glycolysis and Krebs cycle. We use position-specific 13C-labeled metabolic tracers, combined with models of microbial metabolic organization, to analyze the response of microbial community energy production, biosynthesis, and C use efficiency (CUE) in soils, decomposing litter, and aquatic communities. The method consists of adding position-specific 13C -labeled metabolic tracers to parallel soil incubations, in this case 1-13C and 2,3-13C pyruvate and 1-13C and U-13C glucose. The measurement of CO2 released from the labeled tracers is used to calculate the C flux rates through the various metabolic pathways. A simplified metabolic model consisting of 23 reactions is solved using results of the metabolic tracer experiments and assumptions of microbial precursor demand. This new method enables direct estimation of fundamental aspects of microbial energy production, CUE, and soil organic matter formation in relatively undisturbed microbial communities. We will present results showing the range of metabolic patterns observed in these communities and discuss results from testing metabolic models.

  8. Carbon monoxide induced erythroid differentiation of K562 cells mimics the central macrophage milieu in erythroblastic islands.

    Directory of Open Access Journals (Sweden)

    Shlomi Toobiak

    Full Text Available Growing evidence supports the role of erythroblastic islands (EI as microenvironmental niches within bone marrow (BM, where cell-cell attachments are suggested as crucial for erythroid maturation. The inducible form of the enzyme heme oxygenase, HO-1, which conducts heme degradation, is absent in erythroblasts where hemoglobin (Hb is synthesized. Yet, the central macrophage, which retains high HO-1 activity, might be suitable to take over degradation of extra, harmful, Hb heme. Of these enzymatic products, only the hydrophobic gas molecule--CO can transfer from the macrophage to surrounding erythroblasts directly via their tightly attached membranes in the terminal differentiation stage.Based on the above, the study hypothesized CO to have a role in erythroid maturation. Thus, the effect of CO gas as a potential erythroid differentiation inducer on the common model for erythroid progenitors, K562 cells, was explored. Cells were kept under oxygen lacking environment to mimic BM conditions. Nitrogen anaerobic atmosphere (N₂A served as control for CO atmosphere (COA. Under both atmospheres cells proliferation ceased: in N₂A due to cell death, while in COA as a result of erythroid differentiation. Maturation was evaluated by increased glycophorin A expression and Hb concentration. Addition of 1%CO only to N₂A, was adequate for maintaining cell viability. Yet, the average Hb concentration was low as compared to COA. This was validated to be the outcome of diversified maturation stages of the progenitor's population.In fact, the above scenario mimics the in vivo EI conditions, where at any given moment only a minute portion of the progenitors proceeds into terminal differentiation. Hence, this model might provide a basis for further molecular investigations of the EI structure/function relationship.

  9. Field Demonstration of Horizontal Infill Drilling Using Cost-effective Integrated Reservoir Modeling--Mississippian Carbonates, Central Kansas

    Energy Technology Data Exchange (ETDEWEB)

    Saibal Bhattacharya

    2005-08-31

    Mississippian carbonate reservoirs have produced in excess of 1 billion barrels of oil in Kansas accounting for over 16% of the state's production. With declining production from other age reservoirs, the contribution of Mississippian reservoirs to Kansas's oil production has risen to 43% as of 2004. However, solution-enhanced features such as vertical shale intervals extending from the karst erosional surface at the top introduce complexities/compartmentalizations in Mississippian carbonate reservoirs. Coupled with this, strong water drives charge many of these reservoirs resulting in limited drainage from vertical wells due to high water cuts after an initial period of low water production. Moreover, most of these fields are operated by small independent operators without access to the knowledge bank of modern research in field characterization and exploitation/development practices. Thus, despite increasing importance of Mississippian fields to Kansas production, these fields are beset with low recovery factors and high abandonment rates leaving significant resources in the ground. Worldwide, horizontal infill wells have been successful in draining compartmentalized reservoirs with limited pressure depletion. The intent of this project was to demonstrate the application of horizontal wells to successfully exploit the remaining potential in mature Mississippian fields of the mid-continent. However, it is of critical importance that for horizontal wells to be economically successful, they must be selectively targeted. This project demonstrated the application of initial and secondary screening methods, based on publicly available data, to quickly shortlist fields in a target area for detailed studies to evaluate their potential to infill horizontal well applications. Advanced decline curve analyses were used to estimate missing well-level production data and to verify if the well produced under unchanging bottom-hole conditions--two commonly occurring

  10. Ca-rich carbonates associated with ultrabasic-ultramafic melts: Carbonatite or limestone xenoliths? A case study from the late Miocene Morron de Villamayor volcano (Calatrava Volcanic Field, central Spain)

    Science.gov (United States)

    Lustrino, Michele; Prelević, Dejan; Agostini, Samuele; Gaeta, Mario; Di Rocco, Tommaso; Stagno, Vincenzo; Capizzi, Luca Samuele

    2016-07-01

    The volcanic products of the late Miocene Morron de Villamayor volcano (Calatrava Volcanic Field, central Spain) are known for being one of the few outcrops of leucitites in the entire circum-Mediterranean area. These rocks are important because aragonite of mantle origin has been reported as inclusion in olivine macrocrysts. We use petrographic observations, mineral compositions, as well as oxygen and carbon isotope ratios coupled with experimental petrology to understand the origin of carbonate phase in these olivine-phyric rocks. Groundmass and macrocryst olivines range from δ18OVSMOW of +4.8‰, typical of mantle olivine values, to +7.4‰, indicating contamination by sedimentary carbonate. Carbonates are characterized by heavy oxygen isotope compositions (δ18OVSMOW >+24‰), and relatively light carbon isotopes (δ13CPDB <-11‰), resembling skarn values, and distinct from typical mantle carbonatite compositions. Petrography, mineral compositions such as low Mg# of clinopyroxene and biotite, low Ca# and low incompatible element abundance of the carbonate, and isotopic ratios of O and C, do not support a mantle origin for the carbonate. Rather, the carbonate inclusions found in the olivine macrocrysts are interpreted as basement limestone fragments entrapped by the rising crystallizing magma. Comparison with experimental carbonatitic and silicate-carbonatitic melts indicates that low-degree partial melts of a carbonated peridotite must have a dolomitic rather than the aragonitic/calcitic composition as those found trapped in the Morron de Villamayor olivine macrocrysts.

  11. Sedimentary environments and stratigraphy of the carbonate-silicilastic deposits of the Shirgesht Formation: implications for eustasy and local tectonism in the Kalmard Block, Central Iran

    Directory of Open Access Journals (Sweden)

    aram bayetgoll

    2015-10-01

    Full Text Available Introduction   Sedimentological and sequence stratigraphic analysis providing insight into the main relationships between sequence architecture and stacking pattern, syn/post-depositional tectonics, and eustatic sea-level fluctuations (Gawthorpe and Leeder 2000; Zecchin et al. 2003, 2004; Carpentier et al. 2007. Relative variations in sea level are due to tectonic activity and eustasy. The Shirgesht Formation in the Kalmard Block of Central Iran provides a useful case study for to determine the processes responsible on internal architecture and stacking pattern of depositional sequences in a half-graben basin. In the Shirgesht Formation, siliciclastic and carbonate successions of the Kalmard Basin, the cyclic stratigraphic record is the result of the complex interaction of regional uplift, eustasy, local tectonics, sediment supply, and sedimentary processes (Bayet-Goll 2009, 2014; Hosseini-Barzi and Bayet-Goll 2009.     Material & Methods   Lower Paleozoic successions in Tabas and Kalmard blocks from Central Iran share the faunal and floral characteristics with other Gondwana sectors such as south-western Europe and north Africa–Middle East (Ghaderi et al. 2009. The geology of these areas was outlined by Ruttner et al. (1968 and by Bruton et al. (2004. The Cambrian-Middle Triassic strata in the Kalmard Block were deposited in a shallow water platform that possesses lithologic dissimilarities with the Tabas area (Aghanabati 2004. The occurrence of two active faults indicates clearly that Kalmard basin formed a mobile zone throughout the Paleozoic so that lithostratigraphic units show considerably contrasting facies in comparison with Tabas basin (Hosseini-Barzi and Bayet-Goll 2009; Bayet-Goll 2014 . The Shirgesht Formation in the Block Kalmard is mainly composed of carbonate-siliciclastic successions that disconformability overlain Kalmard Formation (attributed to Pre-Cambrian and is underlain by Gachal (Carboniferous or Rahdar (Devonian

  12. Carbon isotope discrimination and water-use efficiency in native plants of the north-central Rockies

    International Nuclear Information System (INIS)

    Stable carbon isotope composition was determined on leaves of woody plants sampled along an 800—km transect on the western flank of the Rocky Mountains at altitudes ranging from 610 to 2650 m above mean sea level. Discrimination decreased by 1.20 ± 0.11% (mean ± 1 se) per km of altitude (n = 15, F1,13 = 127.8, P < 0.0001). The change in discrimination was just sufficient to maintain a constant CO2 partial pressure gradient from ambient air to the intercellular spaces within the leaf for both deciduous (P = 0.60) and evergreen (P = 0.90) species. However, the CO2 gradient so maintained was significantly steeper among evergreen (11.31 ± 0.14 Pa) than among deciduous (9.64 ± 0.14 Pa) species (t = 8.4, 27 df, P < 00001). As a consequence, the evergreens had lower discrimination than the deciduous species at any given altitude. After the data were corrected for altitude, further analysis revealed significant differences in discrimination and in CO2 partial pressure gradient among species. Thuja plicata (western red—cedar), a scale—leaved evergreen, had lowest mean discrimination (16.67 ± 0.50%, n = 4) and the steepest CO2 gradient from ambient to intercellular spaces (14.5 ± 0.5 Pa). Larix occidentalis (western larch), a deciduous conifer, had the highest discrimination (20.95 ± 0.34%, n = 9) and the flattest CO2 gradient (8.3 ± 0.4 Pa). A simple model of water—use efficiency predicted that evergreen species would average 18 ± 2% higher in water—use efficiency at any given altitude and that mean water—use efficiency would triple across a 2000—m altitude gradient. The difference between evergreen and deciduous species is attributable to variation in the CO2 partial pressure gradient, but the tripling with altitude was almost exclusively a consequence of reduced evaporative demand. (author)

  13. Most Blood Biomarkers Related to Vitamin Status, One-Carbon Metabolism, and the Kynurenine Pathway Show Adequate Preanalytical Stability and Within-Person Reproducibility to Allow Assessment of Exposure or Nutritional Status in Healthy Women and Cardiovascular Patients123

    OpenAIRE

    Midttun, Øivind; Townsend, Mary K.; Nygård, Ottar; Tworoger, Shelley S.; Brennan, Paul; Johansson, Mattias; Ueland, Per Magne

    2014-01-01

    Knowledge of stability during sample transportation and changes in biomarker concentrations within person over time are paramount for proper design and interpretation of epidemiologic studies based on a single measurement of biomarker status. Therefore, we investigated stability and intraindividual vs. interindividual variation in blood concentrations of biomarkers related to vitamin status, one-carbon metabolism, and the kynurenine pathway. Whole blood (EDTA and heparin, n = 12) was stored w...

  14. Factors promoting larch dominance in central Siberia: fire versus growth performance and implications for carbon dynamics at the boundary of evergreen and deciduous conifers

    Directory of Open Access Journals (Sweden)

    E.-D. Schulze

    2012-04-01

    Full Text Available The relative role of fire and of climate in determining canopy species composition and aboveground carbon stocks were investigated. Measurements were made along a transect extending from the dark taiga zone of central Siberia, where Picea and Abies dominate the canopy, into the Larix zone of eastern Siberia. We test the hypotheses that the change in canopy species composition is based (1 on climate-driven performance only, (2 on fire only, or (3 on fire-performance interactions. We show that the evergreen conifers Picea obovata and Abies sibirica are the natural late-successional species both in central and eastern Siberia, provided there has been no fire for an extended period of time. There are no changes in performance of the observed species along the transect. Fire appears to be the main factor explaining the dominance of Larix and of soil carbon. Of lesser influence were longitude as a proxy for climate, local hydrology and active-layer thickness. We can only partially explain fire return frequency, which is not only related to climate and land cover, but also to human behavior.

    Stand-replacing fires decreased from 300 to 50 yrs between the Yenisei Ridge and the upper Tunguska. Repeated non-stand-replacing surface fires eliminated the regeneration of Abies and Picea. With every 100 yrs since the last fire, the percentage of Larix decreased by 20%.

    Biomass of stems of single trees did not show signs of age-related decline. Relative diameter increment was 0.41 ± 0.20% at breast height and stem volume increased linearly over time with a rate of about 0.36 t C ha−1 yr−1 independent of age class and species. Stand biomass reached about 130 t C ha−1(equivalent to about 520 m3 ha−1. Individual trees of Larix were older than 600 yrs. The maximum age and biomass seemed to be limited by fungal rot of

  15. Factors promoting larch dominance in central Siberia: fire versus growth performance and implications for carbon dynamics at the boundary of evergreen and deciduous conifers

    Science.gov (United States)

    Schulze, E.-D.; Wirth, C.; Mollicone, D.; von Lüpke, N.; Ziegler, W.; Achard, F.; Mund, M.; Prokushkin, A.; Scherbina, S.

    2012-04-01

    The relative role of fire and of climate in determining canopy species composition and aboveground carbon stocks were investigated. Measurements were made along a transect extending from the dark taiga zone of central Siberia, where Picea and Abies dominate the canopy, into the Larix zone of eastern Siberia. We test the hypotheses that the change in canopy species composition is based (1) on climate-driven performance only, (2) on fire only, or (3) on fire-performance interactions. We show that the evergreen conifers Picea obovata and Abies sibirica are the natural late-successional species both in central and eastern Siberia, provided there has been no fire for an extended period of time. There are no changes in performance of the observed species along the transect. Fire appears to be the main factor explaining the dominance of Larix and of soil carbon. Of lesser influence were longitude as a proxy for climate, local hydrology and active-layer thickness. We can only partially explain fire return frequency, which is not only related to climate and land cover, but also to human behavior. Stand-replacing fires decreased from 300 to 50 yrs between the Yenisei Ridge and the upper Tunguska. Repeated non-stand-replacing surface fires eliminated the regeneration of Abies and Picea. With every 100 yrs since the last fire, the percentage of Larix decreased by 20%. Biomass of stems of single trees did not show signs of age-related decline. Relative diameter increment was 0.41 ± 0.20% at breast height and stem volume increased linearly over time with a rate of about 0.36 t C ha-1 yr-1 independent of age class and species. Stand biomass reached about 130 t C ha-1(equivalent to about 520 m3 ha-1). Individual trees of Larix were older than 600 yrs. The maximum age and biomass seemed to be limited by fungal rot of heart wood. 60% of old Larix and Picea and 30% of Pinus sibirica trees were affected by stem rot. Implications for the future role of fire and of plant diseases are

  16. Origin of a carbonate-hosted Fe-Mn-(Ba-As-Pb-Sb-W) deposit of Långban-type in central Sweden

    Science.gov (United States)

    Holtstam, D.; Mansfeld, J.

    2001-10-01

    The Sjögruvan deposit is one of the Långban-type Fe-Mn oxide deposits hosted by marble interbeds within Svecofennian metavolcanic rocks in the Bergslagen region, central Sweden. Mineralogical and geochemical studies have been carried out to clarify the premetamorphic origin of this type of deposit, which is set apart from most other Mn mineralizations by a significant enrichment in Ba, As, Sb, Pb, W and Be contained by various oxyminerals. The principal ore types at Sjögruvan are (1) hematite+quartz±magnetite, (2) hausmannite+calcite+tephroite and (3) braunite+celsian+phlogopite. The Mn ores are compositionally akin to modern Mn deposits formed by submarine hydrothermal processes (with a high Mn/Fe ratio and low contents of Co, Ni, Th, U and REE) and likely owe their existence to similar mechanisms of formation. Pb isotope data indicate that the metal source and timing of deposition is similar to the major stratabound base-metal and iron deposits in Bergslagen. All the key elements have been leached from the local felsic volcanic units and were deposited on the sea floor; the excellent Mn-Fe separation occurred in an Eh-pH gradient that essentially corresponded to the mixing zone of hydrothermal solutions and seawater. The braunite ore is chemically distinct from the hausmannite ore, with a high concentration of refractory elements (Al, Ti, Zr) and a positive Ce anomaly, which indicate a detrital/hydrogenetic contribution to its protolith. Carbon isotope (δ13C) values around 0‰ (relative PDB) suggest that carbonates in the deposit formed directly from seawater.

  17. Integrating the impact of bioturbation to landscape-scale modeling of soil carbon dynamics: a case study of chernozems in Central Saskatchewan

    Science.gov (United States)

    Viaud, V.; Pennock, D.

    2010-12-01

    Plant-soil interactions and the addition of organic matter from grass have long been the only processes identified to explain soil organic carbon (SOC) distribution and the origin of the A-horizon of chernozemic soils (Dokutchaiev, 1967). But recent studies have suggested that the role of burrowing animals in soil mixing and its consequences on SOC distribution in chernozemic soils have been underestimated (Wilkinson et al., 2009). This work aims at modelling the spatio-temporal evolution of SOC stocks across a catena in a hummocky landscape of Central Saskatchewan. The catena was represented as a 2-dimensional system, divided into 1-m cells in the lateral dimension, and into 6 increments in the vertical dimension (0-to-10, 10-to-20, 20-to-30, 30-to-60, 60-to-90, and 90-to-120 cm). The carbon module of the CENTURY model was used to simulate SOC dynamics in each soil horizon, and the effect of bioturbation on soil vertical mixing in the top soil layers was explicitly modeled. The model also included a simulation of the water budget and water fluxes in soils that partly control SOC dynamics across a catena. The study was based on a detailed dataset from St Denis Wildlife Area (SK, Canada), including climate data, above- and belowground biomass measurements, soil survey, topography, and quantitative data on soil properties and C input in several landscape locations. The model was run over 10000 years. Precipitation and temperature were simulated stochastically. Simulation results, with and without bioturbation, were compared to the current values of SOC stocks.

  18. High Resolution Chemostratigraphy of Khartam Member of the Permo-Triassic Khuff Carbonate : Outcrop Reservoir Analog Approach from Central Saudi Arabia

    Science.gov (United States)

    Abdullatif, Osman; Adam, Ammar

    2013-04-01

    The Permo- Triassic carbonate Khuff reservoir (and equivalents) in the Middle East are estimated to contain about 15-20 % of the world's gas reserves. Excellently exposed Permian-Triassic outcropping strata in central Saudi Arabia provide good outcrop analog to the subsurface Khuff reservoir. The outcrop analog can allow examining and evaluating the stratigraphical and sedimentological heterogeneity which has important impact or reservoir quality and architecture. This chemostratigraphic study is part of an integrated outcrop analog study utilizing both field and laboratory stratigraphical and sedimentological data. The study objective is to characterize the chemostratigraphic properties and signatures related to depositional facies, diagenetic overprint, cyclicity and stratigraphic hierarchy. The Chemostratigraphic outcrop analog study is intended to provide a database and to enhance understanding and prediction of the Khuff carbonate reservoir rocks heterogeneity and quality. The field work included detailed sedimentological and stratigraphical description and analysis, gamma-ray logging and bed-by-bed sampling of outcrop sections of the Khartam Member. Lithofacies varies from mudstone, wackestone, packstone to grainstone and several meter to less than meter scale cyclicity were determined. For all samples collected chemical analysis was carried out for major, trace and rare earth elements. The chemostratigraphic signatures, based on major, trace and rare earth elements, and observed at the outcrop sections is capable of capturing stratigraphic and sedimentologic features observed at the outcrop scale and related to lithofacies, cyclicity, stacking pattern and surfaces. Reservoir and non reservoir facies were also identified and correlated. The high resolution chemostratigraphic approach used in this study may help to refine of stratigraphic hierarchy and reservoir models based on subsurface data. Consequently, this might contribute to better understanding of

  19. Using an explicit emission tagging method in global modeling of source-receptor relationships for black carbon in the Arctic: Variations, sources, and transport pathways

    Science.gov (United States)

    Wang, Hailong; Rasch, Philip J.; Easter, Richard C.; Singh, Balwinder; Zhang, Rudong; Ma, Po-Lun; Qian, Yun; Ghan, Steven J.; Beagley, Nathaniel

    2014-11-01

    We introduce an explicit emission tagging technique in the Community Atmosphere Model to quantify source-region-resolved characteristics of black carbon (BC), focusing on the Arctic. Explicit tagging of BC source regions without perturbing the emissions provides a physically consistent and computationally efficient approach to establish source-receptor relationships and transport pathways. Our analysis shows that the contributions of major source regions to the global BC burden are not proportional to the respective emissions due to strong region-dependent removal rates and lifetimes, while the contributions to BC direct radiative forcing show a near-linear dependence on their respective contributions to the burden. Arctic BC concentrations, deposition, and source contributions all have strong seasonal variations. Eastern Asia contributes the most to the wintertime Arctic BC burden, but has much less impact on lower-level concentrations and deposition. Northern Europe emissions are more important to both surface concentration and deposition in winter than in summer. The largest contribution to Arctic BC in the summer is from Northern Asia. Although local emissions contribute less than 10% to the annual mean BC burden and deposition within the Arctic, the per-emission efficiency is much higher than for non-Arctic sources. The interannual variability (1996-2005) due to meteorology is small in annual mean BC burden and radiative forcing but is significant in yearly seasonal means over the Arctic. When a slow aging treatment of BC is introduced, the increase of BC lifetime and burden is source dependent. Global BC forcing-per-burden efficiency also increases primarily due to changes in BC vertical distributions.

  20. Fructose Alters Intermediary Metabolism of Glucose in Human Adipocytes and Diverts Glucose to Serine Oxidation in the One–Carbon Cycle Energy Producing Pathway

    Directory of Open Access Journals (Sweden)

    Vijayalakshmi Varma

    2015-06-01

    Full Text Available Increased consumption of sugar and fructose as sweeteners has resulted in the utilization of fructose as an alternative metabolic fuel that may compete with glucose and alter its metabolism. To explore this, human Simpson-Golabi-Behmel Syndrome (SGBS preadipocytes were differentiated to adipocytes in the presence of 0, 1, 2.5, 5 or 10 mM of fructose added to a medium containing 5 mM of glucose representing the normal blood glucose concentration. Targeted tracer [1,2-13C2]-d-glucose fate association approach was employed to examine the influence of fructose on the intermediary metabolism of glucose. Increasing concentrations of fructose robustly increased the oxidation of [1,2-13C2]-d-glucose to 13CO2 (p < 0.000001. However, glucose-derived 13CO2 negatively correlated with 13C labeled glutamate, 13C palmitate, and M+1 labeled lactate. These are strong markers of limited tricarboxylic acid (TCA cycle, fatty acid synthesis, pentose cycle fluxes, substrate turnover and NAD+/NADP+ or ATP production from glucose via complete oxidation, indicating diminished mitochondrial energy metabolism. Contrarily, a positive correlation was observed between glucose-derived 13CO2 formed and 13C oleate and doses of fructose which indicate the elongation and desaturation of palmitate to oleate for storage. Collectively, these results suggest that fructose preferentially drives glucose through serine oxidation glycine cleavage (SOGC pathway one-carbon cycle for NAD+/NADP+ production that is utilized in fructose-induced lipogenesis and storage in adipocytes.

  1. Tropical forest carbon balance: effects of field- and satellite-based mortality regimes on the dynamics and the spatial structure of Central Amazon forest biomass

    International Nuclear Information System (INIS)

    Debate continues over the adequacy of existing field plots to sufficiently capture Amazon forest dynamics to estimate regional forest carbon balance. Tree mortality dynamics are particularly uncertain due to the difficulty of observing large, infrequent disturbances. A recent paper (Chambers et al 2013 Proc. Natl Acad. Sci. 110 3949–54) reported that Central Amazon plots missed 9–17% of tree mortality, and here we address ‘why’ by elucidating two distinct mortality components: (1) variation in annual landscape-scale average mortality and (2) the frequency distribution of the size of clustered mortality events. Using a stochastic-empirical tree growth model we show that a power law distribution of event size (based on merged plot and satellite data) is required to generate spatial clustering of mortality that is consistent with forest gap observations. We conclude that existing plots do not sufficiently capture losses because their placement, size, and longevity assume spatially random mortality, while mortality is actually distributed among differently sized events (clusters of dead trees) that determine the spatial structure of forest canopies. (paper)

  2. Studies of palaeovegetation changes in the Central Amazon by carbon isotopes (12C, 13C, 14C) of soil organic matter

    International Nuclear Information System (INIS)

    The paper presents carbon isotope data δ13C and 14C on soil organic matter collected along an ecosystem transect in southern Amazon state, north-central Amazon region, that includes three distinct vegetation communities: savannah (Campos de Humaita), a savannah-forest transition and forest (Manaus). The study sites are located along road BR 319. Botanical identification and 13C analysis of modern vegetation in the savannah and forest sites indicate that most of the vegetation is C3 plants, although a few C4 plants are present at Campos de Humaita. The 13C and 14C data for soil organic matter in the Humaita region show that significant vegetation changes have occurred in the past, probably associated with climatic changes. During the early Holocene, forest vegetation extended throughout the study region, including areas occupied today by savannah vegetation. Savannah vegetation expanded at least 2 km into the modern forest ecotone during the middle Holocene, suggesting drier conditions. The last approximately 1000 years appear to indicate a recent expansion of forest vegetation, reflecting a return to a more moist climate. The study illustrates that the transition area between forest and savannah vegetation is quite sensitive to climatic changes, and this region should be the focus of more extensive research related to past climate and vegetation dynamics in the Amazon region. (author)

  3. Black carbon concentrations in snow at Tronsen Meadow in Central Washington from 2012 to 2013: Temporal and spatial variations and the role of local forest fire activity

    Science.gov (United States)

    Delaney, Ian; Kaspari, Susan; Jenkins, Matthew

    2015-09-01

    Characterizing black carbon (BC) concentrations in the seasonal snowpack is of interest because BC deposition on snow can reduce albedo and accelerate melt. In Washington State, USA snowmelt from the seasonal snowpack provides an important source of water resources, but minimal work has been done characterizing BC concentrations in snow in this region. BC concentrations in snow were monitored over two winters (2012 and 2013) at Tronsen Meadow, located near Blewett Pass in the eastern Cascade Mountains in Central Washington, to characterize spatial and temporal variations in BC concentrations, and the processes affecting BC concentrations in the snowpack. BC concentrations were measured using a Single Particle Soot Photometer. Snowpit BC concentrations at spatial scales ranging from centimeter to 100 m scales were fairly homogenous during the accumulation season, with greater spatial variability during the melt season due to variable melt patterns. BC concentrations in snow increased in late winter-spring due to an increase in atmospheric BC concentrations and trapping of BC on the snow surface during melt. However, during a period of intense melt in 2013 BC concentrations decreased, likely caused by meltwater scavenging. In summer 2012 the Table Mountain forest fire burned adjacent to the study site, and BC concentrations in the snowpack in 2013 were far higher than in previous years, with charred trees postfire the likely source of the elevated BC.

  4. Ultrasonic enhancement of the simultaneous removal of quaternary toxic organic dyes by CuO nanoparticles loaded on activated carbon: Central composite design, kinetic and isotherm study.

    Science.gov (United States)

    Dashamiri, Somayeh; Ghaedi, Mehrorang; Dashtian, Kheibar; Rahimi, Mahmood Reza; Goudarzi, Alireza; Jannesar, Ramin

    2016-07-01

    Copper oxide nanoparticles loaded on activated carbon (CuO-NPs-AC) were prepared and fully analyzed and characterized with FE-SEM, XRD and FT-IR. Subsequently, this novel material was used for simultaneous ultrasound-assisted adsorption of brilliant green (BG), auramine O (AO), methylene blue (MB) and eosin yellow (EY) dyes. Problems regard to dyes spectra overlap in quaternary solution of this dyes were omitted by derivative spectrophotometric method. The best pH in quaternary system was studied by using one at a time method to achieved maximum dyes removal percentage. Subsequently, sonication time, adsorbent dosage and initial dyes concentrations influence on dyes removal was optimized by central composite design (CCD) combined with desirability function approach (DFA). Desirability score of 0.978 show optimum conditions set at sonication time (4.2min), adsorbent mass (0.029g), initial dyes concentration (4.5mgL(-1)). Under this optimum condition the removal percentage for MB, AO, EY and BG dyes 97.58, 94.66, 96.22 and 94.93, respectively. The adsorption rate well fitted by pseudo second-order while adsorption capacity according to the Langmuir model as best equilibrium isotherm model for BG, MB, AO and EY was 20.48, 21.26, 22.34 and 21.29mgg(-1), respectively. PMID:26964982

  5. A hybrid model of support vector regression with genetic algorithm for forecasting adsorption of malachite green onto multi-walled carbon nanotubes: central composite design optimization.

    Science.gov (United States)

    Ghaedi, M; Dashtian, K; Ghaedi, A M; Dehghanian, N

    2016-05-11

    The aim of this work is the study of the predictive ability of a hybrid model of support vector regression with genetic algorithm optimization (GA-SVR) for the adsorption of malachite green (MG) onto multi-walled carbon nanotubes (MWCNTs). Various factors were investigated by central composite design and optimum conditions was set as: pH 8, 0.018 g MWCNTs, 8 mg L(-1) dye mixed with 50 mL solution thoroughly for 10 min. The Langmuir, Freundlich, Temkin and D-R isothermal models are applied to fitting the experimental data, and the data was well explained by the Langmuir model with a maximum adsorption capacity of 62.11-80.64 mg g(-1) in a short time at 25 °C. Kinetic studies at various adsorbent dosages and the initial MG concentration show that maximum MG removal was achieved within 10 min of the start of every experiment under most conditions. The adsorption obeys the pseudo-second-order rate equation in addition to the intraparticle diffusion model. The optimal parameters (C of 0.2509, σ(2) of 0.1288 and ε of 0.2018) for the SVR model were obtained based on the GA. For the testing data set, MSE values of 0.0034 and the coefficient of determination (R(2)) values of 0.9195 were achieved. PMID:27119755

  6. Carbon dioxide-sensing in organisms and its implications for human disease

    OpenAIRE

    Cummins, Eoin P.; Selfridge, Andrew C; Sporn, Peter H.; et al

    2013-01-01

    The capacity of organisms to sense changes in the levels of internal and external gases and to respond accordingly is central to a range of physiologic and pathophysiologic processes. Carbon dioxide, a primary product of oxidative metabolism is one such gas that can be sensed by both prokaryotic and eukaryotic cells and in response to altered levels, elicit the activation of multiple adaptive pathways. The outcomes of activating CO2-sensitive pathways in various species include increased viru...

  7. Palaeogeographic evolution of the marine Middle Triassic marine Germanic Basin changements - With emphasis on the carbonate tidal flat and shallow marine habitats of reptiles in Central Pangaea

    Science.gov (United States)

    Diedrich, Cajus G.

    2009-01-01

    More than seventy-five vertebrate track-sites have been found in Central Europe in 243-246.5 m.y. old Triassic coastal intertidal to sabkha carbonates. In the western part of the very flat Triassic intracontinental Germanic Basin, the carbonate strata contain at least 22 laterally extensive track horizons (called megatracksites). In contrast, in the eastern part of the basin only six megatracksites extended to near the centre of the Basin during marine low stands. Marine ingression and the development of extensive coastal marine environments began during the Aegean (Anisian) stage. This incursion began in the region of the eastern Carpathian and Silesian gates and spread westward due to the development of a tectonically controlled intracratonic basin. The tectonic origin of this basin made it susceptible to tsunamis and submarine earthquakes, which constituted very dangerous hazards for coastal terrestrial and even marine reptiles. The shallow sea that spread across the Germanic Basin produced extensive tidal flats that at times formed extensive inter-peninsular bridges between the Rhenish and Bohemian Massifs. The presence of these inter-peninsular bridges explains the observed distribution and movement of reptiles along coastal Europe and the northern Tethys Seaway during the Middle Triassic epoch. Two small reptiles, probably Macrocnemus and Hescherleria, left millions of tracks and trackways known as Rhynchosauroides and Procolophonichnium in the Middle Triassic coastal intertidal zone. The great abundance of their tracks indicates that their trackmakers Macrocnemus and Hescherleria were permanent inhabitants of this environment. In sharp contrast, tracks of other large terrestrial reptiles are quite rare along the coastal margins of the Germanic Basin, for example the recently discovered archaeosaur tracks and trackways referable to Isochirotherium, which most probably were made by the carnivore Ticinosuchus. Smaller medium-sized predatory thecodont reptiles

  8. Influence of domestic pets on soil concentrations of dissolved organic carbon, nitrogen, and phosphorus under turfgrass in apartment complexes of Central Texas, USA

    Science.gov (United States)

    Steele, M.; Aitkenhead-Peterson, J. A.

    2009-12-01

    High nitrogen (N) and phosphorus (P) watershed loading rates increases the concentration and loads present in urban streams and rivers, resulting in eutrophication and degradation of surface water quality. Domestic pet animal feed may represent a significant proportion of nitrogen loading in urban watersheds, and because it is deposited directly on the watershed surface may have a large effect on N loads in urban surface waters (Baker et al. 2001). Animal manure has long been used to increase soil N and phosphorus concentrations for the purpose of growing agricultural crops; however, little is known about unintentional urban manuring resulting from a high density of domesticated pets. The purpose of this study is to determine if the presence of domesticated animals in high density urban developments results in increased concentrations of soil dissolved organic carbon (DOC), N, and P and the potential to contribute to loading of urban streams. Composite soil samples from the 0 to 5 cm and 5 to 10 cm soil depth were collected from apartment complexes in Bryan/College Station (BCS) and San Antonio, Texas during August, 2009. Apartment complexes were randomly located around the city and were chosen based on their rules regarding pet ownership. Four apartment complexes that allowed all domestic pets were compared to four that did not allow any domestic pets on the property. A 10:1 water extraction of field moist soil was conducted immediately after sampling. Soil water extracts were analyzed for DOC, total dissolved nitrogen (TDN), nitrate-N, ammonium-N, dissolved organic N, and orthophosphate-P. Results indicated significantly increased concentrations of DOC and N species at both depths in BCS apartments that allowed pets compared to those that did not; however, opposite trends were found in San Antonio. There is a trend for increased concentrations of orthophosphate-P at both locations. Baker, L.A., D. Hope, Y. Xu, et al. 2001. Nitrogen balance for the central Arizona

  9. Windthrow and fallow-forest successions impacts in soil carbon stocks and GHG fluxes spatial variability and dynamics in the Central Russia' reserve spruce ecosystems

    Science.gov (United States)

    Vasenev, Ivan; Ivanov, Alexey; Komarova, Tatyana; Valentini, Riccardo

    2015-04-01

    High spatial and temporal variability is mutual feature for most forest soils that is especially obvious in case of their carbon stocks and GHG fluxes. This phenomenon is generally well-known but not so often becomes the object of special precision investigation in detail and small scales so there are still serious gaps in its principal factors understanding due to their high bioclimatic, regional, landscape, tree species and temporal variability. Southern taiga is one of the most environmentally important world zonal forest ecosystems due to its still comparatively intensive carbon biogeochemical cycle and huge area in the northern Eurasia with strong anthropogenic impacts by Western & Central European and Southern & Eastern Asian regions. Central Forest Biospheric Reserve (Tver region, 360 km to North-West from Moscow) is the principal southern-taiga reserve in the European territory of Russia. Since start of its research activity in 1939 the reserve became the regional center of mature spruce ecosystem structure and dynamics investigation. In 1970-1980-s there have been done complex investigations of windthrow soil patterns and fallow-forest successions. Since middle of 1990-s the ecosystem-level GHG fluxes have been observed by eddy covariance method. Since 2012 the detailed year-round monitoring is running in the southern-taiga zonal station of the regional system RusFluxNet with especial attention on the soil carbon stocks and GHG fluxes spatial variability and dynamics due to windthrow and fallow-forest successions (in frame of RF Governmental projects #11.G34.31.0079 and #14.120.14.4266). Soil carbon dynamics is investigated in decades-hundred-year chronosequences of dominated parcels and different-size windthrow soil cover patterns, including direct investigation during last 33 years with detailed mapping, soil profile morphometrics and bulk density, morphogenetic and statistical analysis of mass data. Morphogenetic analysis of microrelief, soil profile

  10. Isoprene and monoterpene fluxes from Central Amazonian rainforest inferred from tower-based and airborne measurements, and implications on the atmospheric chemistry and the local carbon budget

    Directory of Open Access Journals (Sweden)

    U. Kuhn

    2007-01-01

    Full Text Available We estimated the isoprene and monoterpene source strengths of a pristine tropical forest north of Manaus in the central Amazon Basin using three different micrometeorological flux measurement approaches. During the early dry season campaign of the Cooperative LBA Airborne Regional Experiment (LBA-CLAIRE-2001, a tower-based surface layer gradient (SLG technique was applied simultaneously with a relaxed eddy accumulation (REA system. Airborne measurements of vertical profiles within and above the convective boundary layer (CBL were used to estimate fluxes on a regional scale by application of the mixed layer gradient (MLG technique. The mean daytime fluxes of organic carbon measured by REA were 2.1 mg C m−2 h−1 for isoprene, 0.20 mg C m−2 h−1 for α-pinene, and 0.39 mg C m−2 h−1 for the sum of monoterpenes. These values are in reasonable agreement with fluxes determined with the SLG approach, which exhibited a higher scatter, as expected for the complex terrain investigated. The observed VOC fluxes are in good agreement with simulations using a single-column chemistry and climate model (SCM.

    In contrast, the model-derived mixing ratios of VOCs were by far higher than observed, indicating that chemical processes may not be adequately represented in the model. The observed vertical gradients of isoprene and its primary degradation products methyl vinyl ketone (MVK and methacrolein (MACR suggest that the oxidation capacity in the tropical CBL is much higher than previously assumed. A simple chemical kinetics model was used to infer OH radical concentrations from the vertical gradients of (MVK+MACR/isoprene. The estimated range of OH concentrations during the daytime was 3–8×106 molecules cm−3, i.e., an order of magnitude higher than is estimated for the tropical CBL by current state-of-the-art atmospheric chemistry and transport models

  11. The lacustrine carbon cycle as illuminated by the waters and sediments of two hydrologically distinct headwater lakes in North-Central Minnesota, U.S.A

    Science.gov (United States)

    Dean, W.E.; Schwalb, A.

    2002-01-01

    The accumulation rates of CaCO3 and organic carbon (OC) in lake sediments are delicately balanced between production in the epilimnion and destruction in the hypolimnion. The cycling of these two forms of carbon makes a "carbon pump" that greatly affects the biogeochemical cycles of other elements. To further understand these biogeochemical dynamics, the lakes, streams, and wetlands of the Shingobee River headwater area of north-central Minnesota have been subjected to intensive hydrologic and biogeochemical studies. Williams Lake, situated close to the highest point in the regional flow system, is hydrologically closed, with no surface inlet or outlet, and ground water and precipitation as the only sources of water. Shingobee Lake, situated at the lowest point in the regional flow system, has the Shingobee River as an inlet and outlet. The surface waters of both lakes are oversaturated, and the bottom waters undersaturated, with respect to CaCO3 during the summer. The small amount of CaCO3 that is precipitated in the epilimnion of Williams Lake during the summer is dissolved in the undersaturated hypolimnion and sediments with the result that no CaCO3 is incorporated into the profundal surface sediments. Because of the high phytoplankton productivity of Shingobee Lake, sufficient CaCO3 is produced in the epilimnion that large amounts survive the corrosive hypolimnion and sediments, and an average of 46 wt. % accumulates in surface sediments. Another consequence of higher phytoplankton productivity in Shingobee Lake is that the hypolimnion becomes oxygen deficient within a month after overturn in both the spring and fall. Because of reducing conditions that develop in the hypolimnion of Shingobee Lake, high concentrations of dissolved Fe and Mn accumulate there during summer stratification. Precipitation of Fe and Mn oxyhydroxides during periods of fall and spring overturn results in high concentrations of Fe and Mn in surface sediments. In Williams Lake, high

  12. Reaction pathways of the dissociation of methylal: A DFT study

    Energy Technology Data Exchange (ETDEWEB)

    Frey, H.-M.; Beaud, P.; Gerber, T.; Mischler, B.; Radi, P.P.; Tzannis, A.-P. [Paul Scherrer Inst. (PSI), Villigen (Switzerland)

    1999-08-01

    Schemata for modelling combustion processes do not yet include reaction rates for oxygenated fuels like methylal (DMM) which is considered as an additive or replacement for diesel due to its low sooting propensity. Density functional theory (DFT) studies of the possible reaction pathways for different dissociation steps of methylal are presented. Cleavage of a hydrogen bond to the methoxy group or the central carbon atom were simulated at the BLYP/6-311++G{sup **} level of theory. The results are compared to the experiment when dissociating and/or ionising DMM with femtosecond pulses. (author) 1 fig., 1 tab., 1 ref.

  13. Long-term investigations of summertime chlorophyll a, particulate organic carbon and continuously observations of vertical particle flux in Fram Strait and the central Arctic Ocean

    Science.gov (United States)

    Nöthig, Eva-Maria; Bauerfeind, Eduard; Bracher, Astrid; Cherkasheva, Alexandra; Fahl, Kirsten; Lalande, Catherine; Metfies, Katja; Peeken, Ilka; Salter, Ian; Boetius, Antje; Soltwedel, Thomas

    2016-04-01

    The Arctic Ocean is one of the key regions where the effect of climate change is most pronounced due to massive reduction of sea ice volume and extent. Most of the sea ice is transported out of the Arctic Ocean with the cold East Greenland Current (EGC) in the western Fram Strait, while warm Atlantic water enters the Arctic Ocean with the West Spitsbergen Current (WSC) in the eastern Fram Strait. In this scenario we conducted several cruises to Fram Strait and the central Arctic Ocean (CAO) between 1991 and 2015 to monitor phytoplankton biomass, particulate organic carbon standing stocks during summer at discrete depth using water bottle samples, and the sedimentation of organic matter by means of moored sediment traps throughout the year. With our study we aim at tracing effects of environmental changes in the pelagic system and impacts on the fate of organic matter produced in the upper water column in a region that is anticipated to react rapidly to climate change. We will present data sets of phytoplankton biomass (chlorophyll a) and particulate organic carbon (POC) from the upper 100 m of the water column as well as results from vertical particle flux measurements with yearly deployed sediment traps at the LTER (Long-Term Ecological Research) observatory HAUSGARTEN in eastern Fram Strait (79°/4°E) between 2000 and 2012 and from two locations in the CAO close to the Lomonosov Ridge (1995/96) and the Gakkel Ridge (2011/12). Analyses of the material collected by the sediment traps allowed us to track seasonal and inter-annual changes in the upper water column at HAUSGARTEN and in the CAO. Whereas chlorophyll a (integrated values 0 -100 m) showed only a slight increase in eastern Fram Strait, it stayed more or less constant in the CAO and western Fram Strait, with the exception of 2015 exhibiting less biomass during late summer in the CAO. Highest biomass was found in the eastern Fram Strait and lowest in the heavily ice-covered regions. POC distribution

  14. Relationship between fracturing and porogenesis in a carbonate reservoir: Example from the Middle Turonian Bireno Member in Jebel M'rhila, Central Tunisia

    Science.gov (United States)

    Haj Ali, Hajer; Belghithi, Hanen; Ouali, Jamel Abdennaceur; Touir, Jamel

    2016-09-01

    The aim of the present work is to study the Middle Turonian carbonate Bireno Member in Jebel M'rhila area (Central Tunisia). This member mainly consists of dolostones. The sampling of the dolomitic rocks was carried out on both sides of the several fractures affecting the Bireno Member. We also measured the directions and dips of the fractures. The Studied dolomites basically consist of subhedral to euhedral dolospar. The porosity associated to the dolomites show a gradual variation both laterally and vertically. In fact, porosity increases respectively, laterally while going toward the fractures and vertically from the bottom to the top of the dolomitic member. The mineralogical and geochemical analyses of dolomite, carried out respectively by X-Ray Diffraction and Atomic Absorption, show that the studied dolomites broadly range from a sub-stoechiometric dolomite (48% CaCO3) far from the fractures to a dolomitic calcite (84% CaCO3) near the fractures. In the same way, the MgCO3 contents vary from 35% to 11%. Such high contents in Ca against low contents in Mg could probably related to the dilution of the dolomitizing marine waters by meteoric waters which would have been introduced within the platform during the Middle Turonian sea-level fall and the subsequent subaerial exposure of the Bireno platform. The Sr and Na contents (respectively, 4 ppm and 15 ppm in average) are rather low and they gradually decrease while approaching the fractures. Such a gradual decrease in Sr and Na concentrations may be the result of salinity lowering caused by the meteoric waters that would have circulated through the existing fractures networks. The previous analyses were supplemented by the SEM examination of the dolomite and the measurement of porosity and permeability. The SEM allowed us to identify the dolomite petrographic phases and the associated diagenetic products (solution, cementing, dedolomitization.), whereas the porosity and permeability evaluation highlights the

  15. The Entner-Doudoroff pathway is an overlooked glycolytic route in cyanobacteria and plants.

    Science.gov (United States)

    Chen, Xi; Schreiber, Karoline; Appel, Jens; Makowka, Alexander; Fähnrich, Berit; Roettger, Mayo; Hajirezaei, Mohammad R; Sönnichsen, Frank D; Schönheit, Peter; Martin, William F; Gutekunst, Kirstin

    2016-05-10

    Glucose degradation pathways are central for energy and carbon metabolism throughout all domains of life. They provide ATP, NAD(P)H, and biosynthetic precursors for amino acids, nucleotides, and fatty acids. It is general knowledge that cyanobacteria and plants oxidize carbohydrates via glycolysis [the Embden-Meyerhof-Parnas (EMP) pathway] and the oxidative pentose phosphate (OPP) pathway. However, we found that both possess a third, previously overlooked pathway of glucose breakdown: the Entner-Doudoroff (ED) pathway. Its key enzyme, 2-keto-3-deoxygluconate-6-phosphate (KDPG) aldolase, is widespread in cyanobacteria, moss, fern, algae, and plants and is even more common among cyanobacteria than phosphofructokinase (PFK), the key enzyme of the EMP pathway. Active KDPG aldolases from the cyanobacterium Synechocystis and the plant barley (Hordeum vulgare) were biochemically characterized in vitro. KDPG, a metabolite unique to the ED pathway, was detected in both in vivo, indicating an active ED pathway. Phylogenetic analyses revealed that photosynthetic eukaryotes acquired KDPG aldolase from the cyanobacterial ancestors of plastids via endosymbiotic gene transfer. Several Synechocystis mutants in which key enzymes of all three glucose degradation pathways were knocked out indicate that the ED pathway is physiologically significant, especially under mixotrophic conditions (light and glucose) and under autotrophic conditions in a day/night cycle, which is probably the most common condition encountered in nature. The ED pathway has lower protein costs and ATP yields than the EMP pathway, in line with the observation that oxygenic photosynthesizers are nutrient-limited, rather than ATP-limited. Furthermore, the ED pathway does not generate futile cycles in organisms that fix CO2 via the Calvin-Benson cycle. PMID:27114545

  16. The Entner–Doudoroff pathway is an overlooked glycolytic route in cyanobacteria and plants

    Science.gov (United States)

    Chen, Xi; Schreiber, Karoline; Appel, Jens; Makowka, Alexander; Fähnrich, Berit; Roettger, Mayo; Hajirezaei, Mohammad R.; Sönnichsen, Frank D.; Schönheit, Peter; Martin, William F.; Gutekunst, Kirstin

    2016-01-01

    Glucose degradation pathways are central for energy and carbon metabolism throughout all domains of life. They provide ATP, NAD(P)H, and biosynthetic precursors for amino acids, nucleotides, and fatty acids. It is general knowledge that cyanobacteria and plants oxidize carbohydrates via glycolysis [the Embden–Meyerhof–Parnas (EMP) pathway] and the oxidative pentose phosphate (OPP) pathway. However, we found that both possess a third, previously overlooked pathway of glucose breakdown: the Entner–Doudoroff (ED) pathway. Its key enzyme, 2-keto-3-deoxygluconate-6-phosphate (KDPG) aldolase, is widespread in cyanobacteria, moss, fern, algae, and plants and is even more common among cyanobacteria than phosphofructokinase (PFK), the key enzyme of the EMP pathway. Active KDPG aldolases from the cyanobacterium Synechocystis and the plant barley (Hordeum vulgare) were biochemically characterized in vitro. KDPG, a metabolite unique to the ED pathway, was detected in both in vivo, indicating an active ED pathway. Phylogenetic analyses revealed that photosynthetic eukaryotes acquired KDPG aldolase from the cyanobacterial ancestors of plastids via endosymbiotic gene transfer. Several Synechocystis mutants in which key enzymes of all three glucose degradation pathways were knocked out indicate that the ED pathway is physiologically significant, especially under mixotrophic conditions (light and glucose) and under autotrophic conditions in a day/night cycle, which is probably the most common condition encountered in nature. The ED pathway has lower protein costs and ATP yields than the EMP pathway, in line with the observation that oxygenic photosynthesizers are nutrient-limited, rather than ATP-limited. Furthermore, the ED pathway does not generate futile cycles in organisms that fix CO2 via the Calvin–Benson cycle. PMID:27114545

  17. Rhamnolipids elicit defense responses and induce disease resistance against biotrophic, hemibiotrophic, and necrotrophic pathogens that require different signaling pathways in Arabidopsis and highlight a central role for salicylic acid.

    Science.gov (United States)

    Sanchez, Lisa; Courteaux, Barbara; Hubert, Jane; Kauffmann, Serge; Renault, Jean-Hugues; Clément, Christophe; Baillieul, Fabienne; Dorey, Stéphan

    2012-11-01

    Plant resistance to phytopathogenic microorganisms mainly relies on the activation of an innate immune response usually launched after recognition by the plant cells of microbe-associated molecular patterns. The plant hormones, salicylic acid (SA), jasmonic acid, and ethylene have emerged as key players in the signaling networks involved in plant immunity. Rhamnolipids (RLs) are glycolipids produced by bacteria and are involved in surface motility and biofilm development. Here we report that RLs trigger an immune response in Arabidopsis (Arabidopsis thaliana) characterized by signaling molecules accumulation and defense gene activation. This immune response participates to resistance against the hemibiotrophic bacterium Pseudomonas syringae pv tomato, the biotrophic oomycete Hyaloperonospora arabidopsidis, and the necrotrophic fungus Botrytis cinerea. We show that RL-mediated resistance involves different signaling pathways that depend on the type of pathogen. Ethylene is involved in RL-induced resistance to H. arabidopsidis and to P. syringae pv tomato whereas jasmonic acid is essential for the resistance to B. cinerea. SA participates to the restriction of all pathogens. We also show evidence that SA-dependent plant defenses are potentiated by RLs following challenge by B. cinerea or P. syringae pv tomato. These results highlight a central role for SA in RL-mediated resistance. In addition to the activation of plant defense responses, antimicrobial properties of RLs are thought to participate in the protection against the fungus and the oomycete. Our data highlight the intricate mechanisms involved in plant protection triggered by a new type of molecule that can be perceived by plant cells and that can also act directly onto pathogens. PMID:22968829

  18. Fluxes and 13C isotopic composition of dissolved carbon and pathways of methanogenesis in a fen soil exposed to experimental drought

    OpenAIRE

    Knorr, K.-H.; Glaser, B.; C. Blodau

    2008-01-01

    Peatlands contain a carbon stock of global concern and significantly contribute to the global methane burden. The impact of drought and rewetting on carbon cycling in peatland ecosystems is thus currently debated. We studied the impact of experimental drought and rewetting on intact monoliths from a temperate fen over a period of ~300 days, using a permanently wet treatment and two treatments undergoing drought for 50 days. In one of the mesocosms, vegetation had been remove...

  19. Fluxes and 13C isotopic composition of dissolved carbon and pathways of methanogenesis in a fen soil exposed to experimental drought

    OpenAIRE

    C. Blodau; Glaser, B.; K.-H. Knorr

    2008-01-01

    Peatlands contain a carbon stock of global concern and significantly contribute to the global methane burden. The impact of drought and rewetting on carbon cycling in peatland ecosystems is thus currently debated. We studied the impact of experimental drought and rewetting on intact monoliths from a temperate fen over a period of ~300 days, using a permanently wet treatment and two treatments undergoing drought for 50 days. In one of the mesocosms, vegetation had been removed. Net production ...

  20. Subsidence and drowning of a carbonate platform in south-central Mongolia (Gobi Altai region) during the late Eifelian to early Givetian: A synthesis of conodont data, magnetic susceptibility, and paleoecology

    Science.gov (United States)

    Sullivan, Nicholas B.; Jeffrey Over, D.; Chuluun, Minjin; Myrow, Paul M.

    2016-01-01

    New and published stratigraphic data are integrated herein to resolve the age and depositional setting of Middle Devonian strata in the Gobi-Altai Terrane of south-central Mongolia (Bayanhongar Province). The Tsagaankhaalga Formation (Emsian?-Eifelian) is composed primarily of tabular sandy carbonates; it is sharply overlain by dark, fine-grained volcanoclastic marine sedimentary rock of the Govialtai Formation (Givetian), which is comparatively unfossiliferous, except for sporadic, fossiliferous carbonate interbeds. The latter unit contains abundant tentaculites as well as a newly recovered collection of conodonts assigned to the lower Givetian varcus Zone (timorensis, rhenana, or ansatus). A positive shift in bulk magnetic susceptibility coincides with the Tsagaankhaalga/Govialtai contact, and elevated values within the Govialtai correspond to tuffaceous and rhyolitic strata. The transition from carbonate facies of the Tsagaankhaalga Formation to the volcanoclastic shales of the Govialtai Formation is interpreted as the result of local tectonic activity. This may be qualitatively described as a transition from a shallow marine carbonate shoal with an epibenthic fauna (Tsagaankhaalga), to a deeper, clastic dominated environment with a nektic fauna (Govialtai). The pulse of tectonism must predate the lower Givetian, and it echoes the "Tsakhir Event", which is recorded by the transition from Ordovician-Silurian carbonates to Lochkovian conglomerate. These findings provide useful biostratigraphic control and insight into the complex tectonic evolution of the Gobi-Altai Terrane and adjacent blocks on the Eurasian Craton.

  1. Nano-risk Science: application of toxicogenomics in an adverse outcome pathway framework for risk assessment of multi-walled carbon nanotubes

    DEFF Research Database (Denmark)

    Labib, Sarah; Williams, Andrew; Yauk, Carole L.;

    2016-01-01

    -wide expression profiling and in vitro high-throughput assays, are gaining acceptance by the regulatory community for hazard identification and for understanding the underlying mode-of-action. Here, we conducted a case study to evaluate the application of global gene expression data in deriving pathway...

  2. Nitrogenases-A Tale of Carbon Atom(s).

    Science.gov (United States)

    Hu, Yilin; Ribbe, Markus W

    2016-07-11

    Named after its ability to catalyze the reduction of nitrogen to ammonia, nitrogenase has a surprising rapport with carbon-both through the interstitial carbide that resides in the central cavity of its cofactor and through its ability to catalyze the reductive carbon-carbon coupling of small carbon compounds into hydrocarbon products. Recently, a radical-SAM-dependent pathway was revealed for the insertion of carbide, which signifies a novel biosynthetic route to complex bridged metalloclusters. Moreover, a sulfur-displacement mechanism was proposed for the activation of carbon monoxide by nitrogenase, which suggests an essential role of the interstitial carbide in maintaining the stability while permitting a certain flexibility of the cofactor structure during substrate turnover. PMID:27206025

  3. Formulation of an organic carbon trajectory over a 10-year period on a restored spoil island in south-central Florida

    Science.gov (United States)

    Schafer, T.; Ellis, R.; Osborne, T.; Hicks Pries, C.

    2015-12-01

    Long-term monitoring of restoration projects aims to determine long-term sustainability and stability of restored systems. In coastal wetlands, one indicator of restoration of ecosystem function can be seen with organic matter (specifically carbon) accretion. SL-15, a spoil island in Fort Pierce, Fl was restored in 2005, and has been monitored for return to natural condition over the last 10 years.. To assess sediment carbon accretion, sediment cores were collected in a set of eight plots, located on the SL-15 mangrove island and the surrounding seagrass recruitment area. These were analyzed for organic carbon, microbial biomass carbon, extractable carbon, and total nitrogen. The biogeochemical data collected in the previous year was compared to data collected in 2005-2007. Vegetation surveys were also completed to show the build-up of organic material in accordance with vegetation shift over the 9-year period. From this information, a trajectory has been formulated on organic carbon accretion and vegetation shift from the time of orginal restoration activities. By comparison to control sites nearby, realistic estimates of time required to reach natural levels of carbon and vegetation community structure can be calculated..

  4. An Integrative Approach to Energy, Carbon, and Redox Metabolism in the Cyanobacterium Synechocystis sp. PCC 6803. Special Report

    Energy Technology Data Exchange (ETDEWEB)

    Overbeek, R.

    2003-06-30

    The main objectives for the first year were to produce a detailed metabolic reconstruction of synechocystis sp. PCC 6803 especially in interrelated areas of photosynthesis, respiration, and central carbon metabolism to support a more complete understanding and modeling of this organism. Additionally, Integrated Genomics, Inc., provided detailed bioinformatic analysis of selected functional systems related to carbon and energy generation and utilization, and of the corresponding pathways, functional roles and individual genes to support wet lab experiments by collaborators.

  5. Validation of models using Chernobyl fallout data from the Central Bohemia region of the Czech Republic. Scenario CB. First report of the VAMP Multiple Pathways Assessment Working Group. Part of the IAEA/CEC Co-ordinated Research Programme on the Validation of Environmental Model Predictions (VAMP)

    International Nuclear Information System (INIS)

    The VAMP Multiple Pathways Assessment Working Group is an international forum for the testing and comparison of model predictions. The emphasis is on evaluating transfer from the environment to human via all pathways which are relevant in the environment being considered. This document is the first report of the Group and contains the results of the first test exercise on the validation of multiple pathways assessment models using Chernobyl fallout data obtained from the Central Bohemia (CB) region of the Czech Republic (Scenario CB). The report includes the following three appendixes: Documentation and evaluation of model validation data used in scenario CB (3 papers), Description of models used in scenario CB (1 paper), Individual evaluations of model predictions for scenario CB (13 papers). A separate abstract was prepared for each paper. Refs, figs and tabs

  6. Investigation of carbon dioxide in the central South Pacific Ocean (WOCE Sections P-16C and P-17C) during the TUNES/2 expedition of the R/V Thomas Washington, July--August, 1991. Final technical report

    Energy Technology Data Exchange (ETDEWEB)

    Takahashi, T.; Goddard, J.G.; Rubin, S.; Chipman, D.W.; Sutherland, S.C.

    1993-12-01

    This report summarizes the results of carbon dioxide and associated hydrographic measurements made during the oceanographic expedition, TUNES/2, aboard the R/V Thomas Washington in the central South Pacific Ocean. During the 40 day expedition, the total carbon dioxide concentration in 1000 seawater samples were determined using a coulometer system and the pCO(sub 2) in 940 seawater samples were determined using an equilibrator/gas chromatograph system. The alkalinity values in 900 water samples were computed using these measurements. In addition, 156 coulometric measurements were made for the Certified Reference Solutions (Batch No. 6) and yielded a mean value of 2303.2 +or- 1.5umol/kg. The chemical characteristics for the major water masses have been determined.

  7. Genetic variation in TYMS in the one-carbon transfer pathway is associated with ovarian carcinoma types in the Ovarian Cancer Association Consortium

    DEFF Research Database (Denmark)

    Kelemen, Linda E; Goodman, Marc T; McGuire, Valerie;

    2010-01-01

    We previously reported the risks of ovarian carcinoma for common polymorphisms in one-carbon transfer genes. We sought to replicate associations for DPYD rs1801265, DNMT3A rs13420827, MTHFD1 rs1950902, MTHFS rs17284990, and TYMS rs495139 with risk of ovarian carcinoma overall and to use the large...... sample of assembled cases to investigate associations by histologic type....

  8. PhnY and PhnZ comprise a new oxidative pathway for enzymatic cleavage of a carbon-phosphorus bond

    DEFF Research Database (Denmark)

    McSorley, Fern R.; Wyatt, Peter W.; Martinez, Ascuncion;

    2012-01-01

    The sequential activities of PhnY, an α-ketoglutarate/Fe(II)-dependent dioxygenase, and PhnZ, a Fe(II)-dependent enzyme of the histidine-aspartate motif hydrolase family, cleave the carbon-phosphorus bond of the organophosphonate natural product 2-aminoethylphosphonic acid. PhnY adds a hydroxyl...

  9. Design of a Geospatial Systems Model Integrating Power Generation, Transmission and Distribution for Use in Evaluating Low-Carbon Energy Pathways

    Science.gov (United States)

    Kammen, D. M.; Nelson, J.; Petros-Good, A.; Johnston, J.; Fripp, M.; Hoffman, I.; Blanco, C.

    2009-12-01

    The transition to a low-carbon economy requires the coordination of research, and implementation efforts in basic energy and systems science, energy infrastructure, and efficient, low-carbon end-use technologies, practices and polices. While the evolution of specific supply-side and end-use technologies are vital to this process, too little attention has been given to the dramatic opportunities for energy systems science, specifically the use of the transmission, storage, and distribution system, to decarbonize the energy economy. We present results from a model, Switch, that uses historic data for wind, photovoltaic and solar thermal resources and electricity loads, as well as minimum, maximum and average flows for hydroelectric facilities and detailed performance characteristics for all existing conventional generators in its region of analysis. We utilize this model to consider the potential benefits of coordinated energy supply, transmission and distribution, and end-use technology deployment and planning decisions, and to explore opportunities to minimize cost and carbon emissions over the coming decades. We present results from the Switch model for western North America under a range of carbon prices and other policy scenarios, and discuss planned expansions of the model to all of North America and China.

  10. Pathways of carbon oxidation in an Arctic fjord sediment (Svalbard) and isolation of psychrophilic and psychrotolerant Fe(III)-reducing bacteria

    DEFF Research Database (Denmark)

    Vandieken, Verona; Finke, Niko; Jørgensen, Bo Barker

    2006-01-01

    The main mineralization pathways were determined in permanently cold fjord sediment on the west coast of Svalbard. In whole core incubations, the total oxygen uptake rate was 4.2 ± 0.4 mmol m–2 d–1 and the sulfate reduction rate 2.6 ± 0.6 mmol m–2 d–1 at 0 to 20 cm depth. Sulfate reduction was th...

  11. Biosynthesis of monoterpenoids in higher plants. The biosynthetic pathway leading to the monoterpenoids from amino acids with a carbon-skeleton similar to mevalonic acid

    Energy Technology Data Exchange (ETDEWEB)

    Tange, K. (Hiroshima Univ. (Japan). Faculty of Science)

    1981-09-01

    Radioisotopically labeled L-valine, DL-alanine, sodium acetate, and DL-mevalonic acid were incorporated into linalool by the intact plant of Cinnamomum camphora Sieb. var. linalooliferum Fujita and into geraniol and citronellol by that of Pelargonium roseum Bourbon. The uptake of leucine and valine resulted in the preferential location of the radioactivity on the 3,3-dimethylallyl pyrophosphate-derived moiety of these acyclic monoterpenoids, whereas the uptake of alanine resulted in the preferential location on the isopentenyl pyrophosphate-derived moiety, much as in the cases of mevalonic acid and sodium acetate. A biosynthetic pathway leading to the monoterpenoids from the amino acids is discussed.

  12. Influence of vegetation type and site-to-site variability on soil carbonate clumped isotope records, Andean piedmont of Central Argentina (32-34°S)

    Science.gov (United States)

    Ringham, Mallory C.; Hoke, Gregory D.; Huntington, Katharine W.; Aranibar, Julieta N.

    2016-04-01

    The clumped isotope geothermometer estimates the formation temperature (T (Δ47)) of carbonates and has great potential to enhance the extraction of environmental data from pedogenic (soil) carbonate in the geologic record. However, the influence of vegetation type and site-specific conditions on carbonate formation processes and T (Δ47) records remains poorly understood. This study examines the potential for variability in T (Δ47) data between nearby, same elevation sites with different C3/C4 biomass. Pedogenic carbonates (undercoatings and nodules) were collected from five modern soil pits in the semi-arid eastern Andean piedmont of Argentina under a summer precipitation regime. Three pits were instrumented with temperature and moisture sensors to 1 m depth, and a fourth was instrumented with additional soil CO2 and atmospheric (temperature, relative humidity, insolation, and rainfall) sensors. T (Δ47) values (mean: 30 ± 6 °C (±1SE)) are invariant with depth and are statistically indistinguishable between the four instrumented sites, though a 10 °C difference between our T (Δ47) values and those of a nearby Peters et al. (2013, EPSL) study suggests the potential for significant site-to-site variability, likely due to local soil hydrology. The results of this study suggest that deeper (≥40 cm) T (Δ47) values are consistent with carbonate formation during the early part of soil drying immediately after large mid-summer rainstorms. Carbonate formation ≤ 40 cm depth may be biased to soil drying after small, frequent precipitation events occurring throughout the spring, summer, and fall months, averaging to shallow summer T (Δ47) values and resulting in a near-isothermal T (Δ47) profile.

  13. The effects of land use change on carbon content in the aerial biomass of an Abies religiosa (Kunth Schltdl. et Cham.) forest in central Veracruz, Mexico

    OpenAIRE

    M.R. Pineda Lopez; L. R. Sanchez-Velasquez; G. Vazquez-Dominguez; Rojo Alboreca, A.

    2013-01-01

    Aim of study.) Were analyzed patterns and dynamics of forest cover change and land use for the period 1995-2005, and estimated carbon content in biomass in a forest of fir (Abies religiosa).Area of study. Ejido El Conejo in the Cofre de Perote National Park, Veracruz, Mexico.Material and Methods. Spatial data (maps, orthophotographs) were used: (UTM); GRS 80 spheroid; zone 14, datum ITRF92; units: metres. Maps for 1995 and 2005 were constructed and compared. Carbon content in the aboveground ...

  14. Manipulation of carbon flux into fatty acid biosynthesis pathway in Dunaliella salina using AccD and ME genes to enhance lipid content and to improve produced biodiesel quality

    Directory of Open Access Journals (Sweden)

    Ahmad Farhad Talebi

    2014-08-01

    Full Text Available Advanced generations of biofuels basically revolve around non-agricultural energy crops. Among those, microalgae owing to its unique characteristics i.e. natural tolerance to waste and saline water, sustainable biomass production and high lipid content (LC, is regarded by many as the ultimate choice for the production of various biofuels such as biodiesel. In the present study, manipulation of carbon flux into fatty acid biosynthesis pathway in Dunaliella salina was achieved using pGH plasmid harboring AccD and ME genes to enhance lipid content and to improve produced biodiesel quality. The stability of transformation was confirmed by PCR after several passages. Southern hybridization of AccD probe with genomic DNA revealed stable integration of the cassette in the specific positions in the chloroplast genome with no read through transcription by indigenous promoters. Comparison of the LC and fatty acid profile of the transformed algal cell line and the control revealed the over-expression of the ME/AccD genes in the transformants leading to 12% increase in total LC and significant improvements in biodiesel properties especially by increasing algal oil oxidation stability. The whole process successfully implemented herein for transforming algal cells by genes involved in lipid production pathway could be helpful for large scale biodiesel production from microalgae.

  15. Using a Regional Cluster of AmeriFlux Sites in Central California to Advance Our Knowledge on Decadal-Scale Ecosystem-Atmosphere Carbon Dioxide Exchange

    Energy Technology Data Exchange (ETDEWEB)

    Baldocchi, Dennis [Univ. of California, Berkeley, CA (United States)

    2015-03-24

    Continuous eddy convariance measurements of carbon dioxide, water vapor and heat were measured continuously between an oak savanna and an annual grassland in California over a 4 year period. These systems serve as representative sites for biomes in Mediterranean climates and experience much seasonal and inter-annual variability in temperature and precipitation. These sites hence serve as natural laboratories for how whole ecosystem will respond to warmer and drier conditions. The savanna proved to be a moderate sink of carbon, taking up about 150 gC m-2y-1 compared to the annual grassland, which tended to be carbon neutral and often a source during drier years. But this carbon sink by the savanna came at a cost. This ecosystem used about 100 mm more water per year than the grassland. And because the savanna was darker and rougher its air temperature was about 0.5 C warmer. In addition to our flux measurements, we collected vast amounts of ancillary data to interpret the site and fluxes, making this site a key site for model validation and parameterization. Datasets consist of terrestrial and airborne lidar for determining canopy structure, ground penetrating radar data on root distribution, phenology cameras monitoring leaf area index and its seasonality, predawn water potential, soil moisture, stem diameter and physiological capacity of photosynthesis.

  16. Significance of relic carbonate deposits along the central and southwestern margin of India for late Quaternary environmental and sea level changes

    Digital Repository Service at National Institute of Oceanography (India)

    Rao, V.P.; Montaggioni, L.; Vora, K.H.; Almeida, F.; Rao, K.M.; Rajagopalan, G.

    and included isolated patch reefs with a relief of up to 10 m, and linear reefs with reliefs between 2 and 15 m. The main clast types recovered from these features include fragmented corals and carbonate nodules dominated by either encrusted foraminifera...

  17. Encrusting micro-organisms from the Upper Jurassic - Lower Cretaceous Inalti Carbonates (Central Pontides, Turkey): Remarks on reefal / peri-reefal facies development

    Science.gov (United States)

    Yücel Kaya, Mustafa; Altıner, Demir

    2015-04-01

    A detailed taxonomical study was carried out for the identification of encrusting micro-organisms including Bacinella-type structures, Calcistella jachenhausenensis, Crescentiella morronensis, Iberopora bodeuri, Koskinobullina socialis, Labes atramentosa, Lithocodium aggregatum, Perturbatacrusta leini, Pseudorothpletzella schmidi, Radiomura cautica, Sarsteinia babai, Terebella lapilloides and Thaumatoporella parvovesiculifera. Among these microencrusters, Perturbatacrusta leini, Iberopora bodeuri, Calcistella Jachenhausenensis, Pseudorothpletzella schmidi have been taxonomically revealed for the first time in Turkey. Within the biostratigraphic frame of the İnalti carbonates consisting of Mesoendothyra izjumiana zone (Kimmeridgian), Calcistella jachenhausenensis zone (Lower Tithonian - Upper Tithonian) and Protopeneroplis ultragranulata zone (Upper Tithonian - Berriasian), carbonate sedimentation occured in 5 depositional environments comprising slope, fore-reef, reef, back-reef and lagoonal environments. Majority of the reefal deposits of the İnalti carbonates can be classified as coral-microbial-microencruster boundstones and frequently occur associated with back-reef and fore-reef deposits within Kimmeridgian - Berriasian interval. A shallowing and a subsequent deepening in the Berriasian have been revealed by the examination of stacking patterns and vertical evolution of the microfacies. Based on the observed microfacies and general features of micro-encrusting organisms it has been concluded that İnalti Limestones share many similarities with the reefal carbonate deposits of Intra-Tethyan domain in terms of microfacies types and microencruster content. These similarities manifest the extension of the European Upper Jurassic - Lower Cretaceous reef belts to the northern Turkey.

  18. Molecular pathways

    DEFF Research Database (Denmark)

    Cox, Thomas R; Erler, Janine Terra

    2014-01-01

    45% of deaths in the developed world are linked to fibrotic disease. Fibrosis and cancer are known to be inextricably linked; however, we are only just beginning to understand the common and overlapping molecular pathways between the two. Here, we discuss what is known about the intersection of...... fibrosis and cancer, with a focus on cancer metastasis, and highlight some of the exciting new potential clinical targets that are emerging from analysis of the molecular pathways associated with these two devastating diseases. Clin Cancer Res; 20(14); 3637-43. ©2014 AACR....

  19. Evaluation of carbon stocks in above- and below-ground biomass in Central Africa: case study of Lesio-louna tropical rainforest of Congo

    Science.gov (United States)

    Liu, X.; Ekoungoulou, R.; Loumeto, J. J.; Ifo, S. A.; Bocko, Y. E.; Koula, F. E.

    2014-07-01

    The study was aimed to estimate the carbon stocks of above- and below-ground biomass in Lesio-louna forest of Congo. The methodology of allometric equations was used to measure the carbon stocks of Lesio-louna natural forest. We are based precisely on the model II which is also called non-destructive method or indirect method of measuring carbon stocks. While there has been use of parameters such as the DBH and wood density. The research was done with 22 circular plots each 1256 m2. In the 22 plots studied, 19 plots are in the gallery forest and three plots in the secondary forest. Also, 22 circular plots were distributed in 5 sites studies of Lesio-louna forest, including: Inkou forest island, Iboubikro, Ngoyili, Blue lake and Ngambali. So, there are two forest types (secondary forest and gallery forest) in this forest ecosystem. In the 5 sites studied, we made measurements on a total of 347 trees with 197 trees for the class of 10-30 cm diameter, 131 trees for the class of 30-60 cm diameter and 19 trees in the diameter class > 60 cm. The results show that in the whole forest, average carbon stock for the 22 plots of the study was 168.601 t C ha-1 for AGB, or 81% and 39.551 t C ha-1 for BGB, or 19%. The total carbon stocks in all the biomass was 3395.365 t C for AGB, which is 3.395365 × 10-6 Gt C and 909.689934 t C for BGB, which was 9.09689934 × 10-7 Gt C. In this forest, the carbon stock was more important in AGB compared to BGB with respectively 3395.365 t C against 909.689934 t C. Plot10 (AGB = 363.899 t C ha-1 and BGB = 85.516 t C ha-1) was the most dominant in terms of carbon quantification in Lesio-louna.

  20. Evaluation of carbon stocks in above- and below-ground biomass in Central Africa: case study of Lesio-louna tropical rainforest of Congo

    Directory of Open Access Journals (Sweden)

    X. Liu

    2014-07-01

    Full Text Available The study was aimed to estimate the carbon stocks of above- and below-ground biomass in Lesio-louna forest of Congo. The methodology of allometric equations was used to measure the carbon stocks of Lesio-louna natural forest. We are based precisely on the model II which is also called non-destructive method or indirect method of measuring carbon stocks. While there has been use of parameters such as the DBH and wood density. The research was done with 22 circular plots each 1256 m2. In the 22 plots studied, 19 plots are in the gallery forest and three plots in the secondary forest. Also, 22 circular plots were distributed in 5 sites studies of Lesio-louna forest, including: Inkou forest island, Iboubikro, Ngoyili, Blue lake and Ngambali. So, there are two forest types (secondary forest and gallery forest in this forest ecosystem. In the 5 sites studied, we made measurements on a total of 347 trees with 197 trees for the class of 10–30 cm diameter, 131 trees for the class of 30–60 cm diameter and 19 trees in the diameter class > 60 cm. The results show that in the whole forest, average carbon stock for the 22 plots of the study was 168.601 t C ha−1 for AGB, or 81% and 39.551 t C ha−1 for BGB, or 19%. The total carbon stocks in all the biomass was 3395.365 t C for AGB, which is 3.395365 × 10–6 Gt C and 909.689934 t C for BGB, which was 9.09689934 × 10–7 Gt C. In this forest, the carbon stock was more important in AGB compared to BGB with respectively 3395.365 t C against 909.689934 t C. Plot10 (AGB = 363.899 t C ha−1 and BGB = 85.516 t C ha−1 was the most dominant in terms of carbon quantification in Lesio-louna.

  1. Colloquium on Central Asia

    International Nuclear Information System (INIS)

    This colloquium on Azerbaijan was organized by the direction of international relations of the French Senate and the French center of foreign trade (CFCE). This document gathers the interventions of the participants and the debates with the audience following these interventions. The topics treated concern: - the present day political-economical situation of Central Asia countries (problem of borders, relations with Russia and China); - the economies of Central Asia countries: short term problems and medium-term perspectives; - the relations with the European Union (political, economical, trade and investments, perspectives); - the European energy stakes of Caspian sea (oil and gas reserves, development of hydrocarbon resources, exploitation and transport constraints, stakes for Europe and France); - TotalFinaElf company in Central Asia (Kazakhstan, Azerbaijan, enclavement problem); - the economical impacts of the TRACECA pathway (Transport Corridor Europe Caucasus Asia). (J.S.)

  2. The effects of land use change on carbon content in the aerial biomass of an Abies religiosa (Kunth Schltdl. et Cham. forest in central Veracruz, Mexico

    Directory of Open Access Journals (Sweden)

    M.R. Pineda Lopez

    2013-04-01

    Full Text Available Aim of study. Were analyzed patterns and dynamics of forest cover change and land use for the period 1995-2005, and estimated carbon content in biomass in a forest of fir (Abies religiosa.Area of study. Ejido El Conejo in the Cofre de Perote National Park, Veracruz, Mexico.Material and Methods. Spatial data (maps, orthophotographs were used: (UTM; GRS 80 spheroid; zone 14, datum ITRF92; units: metres. Maps for 1995 and 2005 were constructed and compared. Carbon content in the aboveground biomass of fir (Abies religiosa was estimated using an equation specific to species.Main results. After one decade, the forested area had increased slightly (0.25%. The main type of land cover change was from shrubland to forest (probability of change 0.41; the change from forestland to shrubland with trees was 0.05%, and from forest to agriculture was 0.02%. Data from 2008 confirmed that the A. religiosa forest located in the ejido is distributed in largely unconnected fragments, of which some have a high density of young trees. Estimated carbon content in the aboveground biomass (163.51 Mg ha-1 was higher than that estimated for other forests of the same species in Mexico.Research highlights. It is recommended that ecological corridors be established throughout the reforested area, in order to connect these fragments (and increase carbon sequestration and favour faunal and floral conservation. Finally, recognition should be given to the high vulnerability of A. religiosa forests to climate change, given their high degree of fragmentation and critical altitudinal limit.Key words: Aboveground biomass; carbon storage; ecological corridors; fir forest.

  3. Degradation of endogenous hepatic heme by pathways not yielding carbon monoxide. Studies in normal rat liver and in primary hepatocyte culture.

    OpenAIRE

    Bissell, D. M.; Guzelian, P S

    1980-01-01

    The conversion of endogenous hepatic heme to bilirubin and CO is established. However, it is unknown whether this process is quantitative or whether heme may be degraded to other products as well. To study this question, we administered the heme precursor, delta-amino-[5-14C]levulinic acid to rats in vivo. In liver, [14C]heme was predominately associated with microsomal cytochromes, and its degradation was examined over a period of 12--14 h; concurrently, excretion of labeled carbon monoxide ...

  4. The CCAAT box-binding factor stimulates ammonium assimilation in Saccharomyces cerevisiae, defining a new cross-pathway regulation between nitrogen and carbon metabolisms.

    OpenAIRE

    Dang, V D; Bohn, C.; Bolotin-Fukuhara, M.; Daignan-Fornier, B

    1996-01-01

    In Saccharomyces cerevisiae, carbon and nitrogen metabolisms are connected via the incorporation of ammonia into glutamate; this reaction is catalyzed by the NADP-dependent glutamate dehydrogenase (NADP-GDH) encoded by the GDH1 gene. In this report, we show that the GDH1 gene requires the CCAAT box-binding activator (HAP complex) for optimal expression. This conclusion is based on several lines of evidence: (1) overexpression of GDH1 can correct the growth defect of hap2 and hap3 mutants on a...

  5. Usage of microbial mats in depostional environment interpretation and sea level changes: A study of carbonate deposits of members 1 to 2 of the Mila Group (Deh-Sufiyan Formation in Central Alborz

    Directory of Open Access Journals (Sweden)

    Aram Bayetgol

    2015-05-01

    Full Text Available Carbonate deposits of members 1 to 2 of the Mila Group (Middle Cambrian in Central Alborz that call Deh-Sufiyan Formation in this research, were studied in Shahmirzad, Tueh-Darvar, Mila-Kuh and Deh-Molla sections. These sediments were deposited in four facies belts on a carbonate ramp including basinal environments, outer ramp (deep subtidal sequences, mid ramp (shallow subtidal to lower intertidal sequences, and inner ramp (shoal and upper intertidal to supratidal sequences. Various microbialites were recognized in the shallow-water sediments (includes subtidal and intertidal of this unit. Based on this study, microbial mats have various morphology of form and type of growth structure and inluding laminar to wavy-laminar, domal or hemispheroidal, bulbous, columnar, regular flabellate columns, unlaminated, loaf- to mound-shaped thrombolities. Facies associations of Deh-Sufiyan Formation are arranged in small-scale of peritidal, shallow subtidal, and deep subtidal cycles and microbial mats are the major features of them. The trends of vertical changes of facies in shallowing-upward and deepening-upward cycles and distribution of various types of microbialites in these cycles had been related to depostional environments and their postions on carbonate ramp. Basal classification method used in this study can provide valuable informations for application of microbiali mats in paleo-environmental and sequence stratigraphy analysis.

  6. Metabolic carbon fluxes and biosynthesis of polyhydroxyalkanoates in Ralstonia eutropha on short chain fatty acids.

    Science.gov (United States)

    Yu, Jian; Si, Yingtao

    2004-01-01

    Short chain fatty acids such as acetic, propionic, and butyric acids can be synthesized into polyhydroxyalkanoates (PHAs) by Ralstonia eutropha. Metabolic carbon fluxes of the acids in living cells have significant effect on the yield, composition, and thermomechanical properties of PHA bioplastics. Based on the general knowledge of central metabolism pathways and the unusual metabolic pathways in R. eutropha, a metabolic network of 41 bioreactions is constructed to analyze the carbon fluxes on utilization of the short chain fatty acids. In fed-batch cultures with constant feeding of acid media, carbon metabolism and distribution in R. eutropha were measured involving CO2, PHA biopolymers, and residual cell mass. As the cells underwent unsteady state metabolism and PHA biosynthesis under nitrogen-limited conditions, accumulative carbon balance was applied for pseudo-steady-state analysis of the metabolic carbon fluxes. Cofactor NADP/NADPH balanced between PHA synthesis and the C3/C4 pathway provided an independent constraint for solution of the underdetermined metabolic network. A major portion of propionyl-CoA was directed to pyruvate via the 2-methylcitrate cycle and further decarboxylated to acetyl-CoA. Only a small amount of propionate carbon (acetic acid in the medium. Malate is the node of the C3/C4 pathway and TCA cycle and its decarboxylation to dehydrogenation ranges from 0.33 to 1.28 in response to the demands on NADPH and oxaloacetate for short chain fatty acids utilization. PMID:15296425

  7. Production of carbon-13-labeled cadaverine by engineered Corynebacterium glutamicum using carbon-13-labeled methanol as co-substrate.

    Science.gov (United States)

    Leßmeier, Lennart; Pfeifenschneider, Johannes; Carnicer, Marc; Heux, Stephanie; Portais, Jean-Charles; Wendisch, Volker F

    2015-12-01

    Methanol, a one-carbon compound, can be utilized by a variety of bacteria and other organisms as carbon and energy source and is regarded as a promising substrate for biotechnological production. In this study, a strain of non-methylotrophic Corynebacterium glutamicum, which was able to produce the polyamide building block cadaverine as non-native product, was engineered for co-utilization of methanol. Expression of the gene encoding NAD+-dependent methanol dehydrogenase (Mdh) from the natural methylotroph Bacillus methanolicus increased methanol oxidation. Deletion of the endogenous aldehyde dehydrogenase genes ald and fadH prevented methanol oxidation to carbon dioxide and formaldehyde detoxification via the linear formaldehyde dissimilation pathway. Heterologous expression of genes for the key enzymes hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase of the ribulose monophosphate (RuMP) pathway in this strain restored growth in the presence of methanol or formaldehyde, which suggested efficient formaldehyde detoxification involving RuMP key enzymes. While growth with methanol as sole carbon source was not observed, the fate of 13C-methanol added as co-substrate to sugars was followed and the isotopologue distribution indicated incorporation into central metabolites and in vivo activity of the RuMP pathway. In addition, 13C-label from methanol was traced to the secreted product cadaverine. Thus, this synthetic biology approach led to a C. glutamicum strain that converted the non-natural carbon substrate methanol at least partially to the non-native product cadaverine. PMID:26276544

  8. Biochar production for carbon sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Thakkar, J.; Kumar, A. [Alberta Univ., Edmonton, AB (Canada). Dept. of Mechanical Engineering

    2010-07-01

    This study examined the use of agricultural biomass for biochar production and its storage in a landfill to sequester carbon. Capturing the energy from biomass that would otherwise decay, is among the many options available to mitigate the impact of the greenhouse gas (GHG) emissions associated with fossil fuel consumption. Biochar is a solid fuel which can be produced from agricultural biomass such as wheat and barley straw. This organic solid can be produced by slow pyrolysis of straw. A conceptual techno-economic model based on actual data was used to estimate the cost of producing biochar from straw in a centralized plant. The objectives of the study were to estimate the overall delivered cost of straw to the charcoal production plant; estimate the transportation costs of charcoal to the landfill site; estimate the cost of landfill; and estimate the overall cost of carbon sequestration through a charcoal landfill. According to preliminary results, the cost of carbon sequestration through this pathway is greater than $50 per tonne of carbon dioxide.

  9. Paleomagnetism of the Gran Sasso range salient (central Apennines, Italy): Pattern of orogenic rotations due to translation of a massive carbonate indenter

    OpenAIRE

    Satolli, S.; Dipartimento di Scienze della Terra, Università di Chieti, Chieti, Italy; Speranza, F.; Istituto Nazionale di Geofisica e Vulcanologia, Sezione Roma2, Roma, Italia; Calamita, F.; Dipartimento di Scienze della Terra, Università di Chieti, Chieti, Italy

    2005-01-01

    We report on the paleomagnetism (39 new sites) of Gran Sasso, an indenter-controlled salient of the external central Apennines formed by two orthogonal limbs. We find that Gran Sasso is a complex salient, paleomagnetically corresponding to neither a nonrotating nor an oroclinal end-member. Data from the core of the arc show that the indenter itself did not undergo any rotation. Conversely, rotations of variable magnitude and sign are observed along the curveshaped thrust fronts. Rotatio...

  10. The effects of land use change on carbon content in the aerial biomass of an Abies religiosa (Kunth Schltdl. et Cham.) forest in central Veracruz, Mexico

    Energy Technology Data Exchange (ETDEWEB)

    Pineda-Lopez, M. R.; Sanchez-Velasquez, L. R.; Vazquez-Dominguez, G.; Rojo-Alboreca, A.

    2013-05-01

    Aim of study.) Were analyzed patterns and dynamics of forest cover change and land use for the period 1995-2005, and estimated carbon content in biomass in a forest of fir (Abies religiosa). Area of study. Ejido El Conejo in the Cofre de Perote National Park, Veracruz, Mexico. Material and Methods. Spatial data (maps, ortho photographs) were used: (UTM); GRS 80 spheroid; zone 14, datum ITRF92; units: metres. Maps for 1995 and 2005 were constructed and compared. Carbon content in the aboveground biomass of fir (Abies religiosa) was estimated using an equation specific to species. Main results. After one decade, the forested area had increased slightly (0.25%). The main type of land cover change was from shrubland to forest (probability of change 0.41); the change from forestland to shrubland with trees was 0.05%, and from forest to agriculture was 0.02%. Data from 2008 confirmed that the A. religiosa forest located in the ejido is distributed in largely unconnected fragments, of which some have a high density of young trees. Estimated carbon content in the aboveground biomass (163.51 Mg ha-1) was higher than that estimated for other forests of the same species in Mexico. Research highlights. It is recommended that ecological corridors be established throughout the reforested area, in order to connect these fragments (and increase carbon sequestration) and favour faunal and floral conservation. Finally, recognition should be given to the high vulnerability of A. religiosa forests to climate change, given their high degree of fragmentation and critical altitudinal limit. (Author) 55 refs.

  11. Controls on a shallow-water hemipelagic carbonate system adjacent to a siliciclastic margin: example from late Turonian of central Europe

    Czech Academy of Sciences Publication Activity Database

    Laurin, Jiří; Uličný, David

    2004-01-01

    Roč. 74, č. 5 (2004), s. 697-717. ISSN 1527-1404 R&D Projects: GA ČR GA205/01/0629; GA AV ČR IAA3111501; GA AV ČR KJB3012310 Institutional research plan: CEZ:AV0Z3012916 Keywords : Bohemian Cretaceous Basin * hemipelagic carbonate system * sedimentary rhythms Subject RIV: DB - Geology ; Mineralogy Impact factor: 1.323, year: 2004

  12. Distribution and phylogenies of enzymes of the Embden-Meyerhof-Parnas pathway from archaea and hyperthermophilic bacteria support a gluconeogenic origin of metabolism

    Directory of Open Access Journals (Sweden)

    Ron S. Ronimus

    2003-01-01

    Full Text Available Enzymes of the gluconeogenic/glycolytic pathway (the Embden-Meyerhof-Parnas (EMP pathway, the reductive tricarboxylic acid cycle, the reductive pentose phosphate cycle and the Entner-Doudoroff pathway are widely distributed and are often considered to be central to the origins of metabolism. In particular, several enzymes of the lower portion of the EMP pathway (the so-called trunk pathway, including triosephosphate isomerase (TPI; EC 5.3.1.1, glyceraldehyde-3-phosphate dehydrogenase (GAPDH; EC 1.2.1.12/13, phosphoglycerate kinase (PGK; EC 2.7.2.3 and enolase (EC 4.2.1.11, are extremely well conserved and universally distributed among the three domains of life. In this paper, the distribution of enzymes of gluconeogenesis/glycolysis in hyperthermophiles—microorganisms that many believe represent the least evolved organisms on the planet—is reviewed. In addition, the phylogenies of the trunk pathway enzymes (TPIs, GAPDHs, PGKs and enolases are examined. The enzymes catalyzing each of the six-carbon transformations in the upper portion of the EMP pathway, with the possible exception of aldolase, are all derived from multiple gene sequence families. In contrast, single sequence families can account for the archaeal and hyperthermophilic bacterial enzyme activities of the lower portion of the EMP pathway. The universal distribution of the trunk pathway enzymes, in combination with their phylogenies, supports the notion that the EMP pathway evolved in the direction of gluconeogenesis, i.e., from the bottom up.

  13. Carbon and hydrogen isotopic evidence for the origin of combustible gases in water-supply wells in north-central Pennsylvania

    Science.gov (United States)

    Révész, K. M.; Breen, K.J.; Baldassare, A.J.; Burruss, R.C.

    2010-01-01

    The origin of the combustible gases in groundwater from glacial-outwash and fractured-bedrock aquifers was investigated in northern Tioga County, Pennsylvania. Thermogenic methane (CH4) and ethane (C2H6) and microbial CH4 were found. Microbial CH4 is from natural in situ processes in the shale bedrock and occurs chiefly in the bedrock aquifer. The δ13C values of CH4 and C2H6 for the majority of thermogenic gases from water wells either matched or were between values for the samples of non-native storage-field gas from injection wells and the samples of gas from storage-field observation wells. Traces of C2H6 with microbial CH4 and a range of C and H isotopic compositions of CH4 indicate gases of different origins are mixing in sub-surface pathways; gas mixtures are present in groundwater. Pathways for gas migration and a specific source of the gases were not identified. Processes responsible for the presence of microbial gases in groundwater could be elucidated with further geochemical study.

  14. Molecular Basis of Microbial One-Carbon Metabolism 2008 Gordon Research Conference (July 20-25, 2008)

    Energy Technology Data Exchange (ETDEWEB)

    Stephen W. Ragsdale

    2009-08-12

    One-carbon (C-1) compounds play a central role in microbial metabolism. C-1 compounds include methane, carbon monoxide, CO2, and methanol as well as coenzyme-bound one-carbon compounds (methyl-B12, CH3-H4folate, etc). Such compounds are of broad global importance because several C-1 compounds (e.g., CH4) are important energy sources, some (e.g., CO2 and CH4) are potent greenhouse gases, and others (e.g., CH2Cl2) are xenobiotics. They are central in pathways of energy metabolism and carbon fixation by microbes and many are of industrial interest. Research on the pathways of one-carbon metabolism has added greatly to our understanding of evolution, structural biology, enzyme mechanisms, gene regulation, ecology, and applied biology. The 2008 meeting will include recent important findings in the following areas: (a) genomics, metagenomics, and proteomic studies that have expanded our understanding of autotrophy and C-1 metabolism and the evolution of these pathways; (b) redox regulation of carbon cycles and the interrelationship between the carbon cycle and other biogeochemical cycles (sulfur, nitrogen, oxygen); (c) novel pathways for carbon assimilation; (d) biotechnology related to C-1 metabolism; (e) novel enzyme mechanisms including channeling of C-1 intermediates during metabolism; and (f) the relationship between metal homeostasis and the global carbon cycle. The conference has a diverse and gender-balanced slate of speakers and session leaders. The wide variety of disciplines brought to the study of C-1 metabolism make the field an excellent one in which to train young researchers.

  15. Chemical processes of coal for use in power plants. Part 1: Approximate analysis and associated indexes of pulverized coal; Procesos quimicos del carbon para su uso en centrales termoelectricas. Parte 1: Analisis aproximado e indices asociados del carbon pulverizado

    Energy Technology Data Exchange (ETDEWEB)

    Altamirano-Bedolla, J. A.; Manzanares-Papayanopoulos, E.; Herrera-Velarde, J. R. [Instituto de Investigaciones Electricas, Cuernavaca, Morelos (Mexico)]. E-mail: emp@iie.org.mx

    2010-11-15

    The usage of hydrocarbons, such as natural gas, oil products and coal, will be the main source of energy to the mankind for next generations. Therefore, the actual research and technological developments point out to employ with high efficiency those fuels. The main interests are to release most of the energy as possible and to guide the combustion reactions. It is well known that during the combustion process of coal, the chemical energy is converted to thermal energy, which it allows the steam production, and therefore to produce energy through an electric generator. The main interest of the work presented here is to study the behavior of the coal combustion processes in function of the approximate analysis and some associate indices of that analysis, to point out the optimization of the coal usage as main fuel in electrical power generation plants. [Spanish] El uso de hidrocarburos como son el gas natural, los derivados del petroleo y el carbon mineral, continuara siendo en las proximas decadas la principal fuente de energia de la humanidad. Por consiguiente, la investigacion cientifica y los desarrollos tecnologicos actualmente se enfocan en emplear de manera mas eficiente dichos combustibles, satisfaciendo entre otros factores, dos intereses principales: liberar la mayor cantidad de energia, reduciendo al minimo el material combustible no quemado, y direccionar las reacciones del proceso de combustion para minimizar la cantidad de productos no deseados resultantes de la reaccion. A traves de los procesos quimicos de combustion del carbon, se transforma la energia quimica a energia termica, lo que permite la produccion de vapor para a su vez impulsar una turbina la cual esta acoplada a un generador electrico. El objetivo del presente trabajo es el estudio del comportamiento de los procesos quimicos que se llevan a cabo durante las reacciones de combus-tion del carbon en funcion del analisis aproximado y de los indices asociados resultantes de dicho analisis; lo

  16. Geologic framework for the national assessment of carbon dioxide storage resources: Williston Basin, Central Montana Basins, and Montana Thrust Belt study areas: Chapter J in Geologic framework for the national assessment of carbon dioxide storage resources

    Science.gov (United States)

    Buursink, Marc L.; Merrill, Matthew D.; Craddock, William H.; Roberts-Ashby, Tina L.; Brennan, Sean T.; Blondes, Madalyn S.; Freeman, P.A.; Cahan, Steven M.; DeVera, Christina A.; Lohr, Celeste D.

    2014-01-01

    The 2007 Energy Independence and Security Act directs the U.S. Geological Survey (USGS) to conduct a national assessment of potential geologic storage resources for carbon dioxide (CO2). The methodology used by the USGS for the national CO2 assessment follows that of previous USGS work. This methodology is non-economic and is intended to be used at regional to sub-basinal scales.

  17. Reactome from a WikiPathways Perspective.

    Science.gov (United States)

    Bohler, Anwesha; Wu, Guanming; Kutmon, Martina; Pradhana, Leontius Adhika; Coort, Susan L; Hanspers, Kristina; Haw, Robin; Pico, Alexander R; Evelo, Chris T

    2016-05-01

    Reactome and WikiPathways are two of the most popular freely available databases for biological pathways. Reactome pathways are centrally curated with periodic input from selected domain experts. WikiPathways is a community-based platform where pathways are created and continually curated by any interested party. The nascent collaboration between WikiPathways and Reactome illustrates the mutual benefits of combining these two approaches. We created a format converter that converts Reactome pathways to the GPML format used in WikiPathways. In addition, we developed the ComplexViz plugin for PathVisio which simplifies looking up complex components. The plugin can also score the complexes on a pathway based on a user defined criterion. This score can then be visualized on the complex nodes using the visualization options provided by the plugin. Using the merged collection of curated and converted Reactome pathways, we demonstrate improved pathway coverage of relevant biological processes for the analysis of a previously described polycystic ovary syndrome gene expression dataset. Additionally, this conversion allows researchers to visualize their data on Reactome pathways using PathVisio's advanced data visualization functionalities. WikiPathways benefits from the dedicated focus and attention provided to the content converted from Reactome and the wealth of semantic information about interactions. Reactome in turn benefits from the continuous community curation available on WikiPathways. The research community at large benefits from the availability of a larger set of pathways for analysis in PathVisio and Cytoscape. The pathway statistics results obtained from PathVisio are significantly better when using a larger set of candidate pathways for analysis. The conversion serves as a general model for integration of multiple pathway resources developed using different approaches. PMID:27203685

  18. Determining the origin of carbon dioxide and methane in the gaseous emissions of the San Vittorino plain (Central Italy) by means of stable isotopes and noble gas analysis

    International Nuclear Information System (INIS)

    Highlights: ► Chemistry and isotope ratios (He, C, H) of free gases from San Vittorino plain (central Italy). ► CO2 is mainly originated by thermo-metamorphic reaction of limestone. ► The degassing is concentrated in fault zones. ► CH4 is mainly produced by thermogenic processes. ► Microbial oxidative process affects the isotopic composition of CH4. - Abstract: The chemistry and isotope ratios of He, C (δ13C) and H (δD) of free gases collected in the San Vittorino plain, an intramontane depression of tectonic origin, were determined to shed light on mantle degassing in central Italy. The C isotopic composition of CO2 (δ13C–CO2 −2.0‰ to −3.8‰) and He isotope ratios (R/RA 0.12–0.27) were used to calculate the fraction of CO2 originating from mantle degassing vs. sedimentary sources. The results show that CO2 predominantly (average of 75%) derives from the thermo-metamorphic reaction of limestone. Between 6% and 22% of the CO2 in the samples derives from organic-rich sedimentary sources. The mantle source accounts for 0–6% of the total CO2; however, in two samples, located in proximity to the most important faults of the plain, the mantle accounts for 24% and 42%. The presence of faults and fractures allows upward gas migration from a deep source to the Earth’s surface, not only in the peri-Tyrrhenian sector, as generally reported by studies on natural gas emissions in central Italy, but also in the pre-Apennine and Apennine belts. Isotope ratios of CH4 (δ13C–CH4 −6.1‰ to −22.7‰; δD–CH4 −9‰ to −129‰) show that CH4 does not appear to be related to mantle or magma degassing, but it is the product of thermal degradation of organic matter (i.e. thermogenic origin) and/or the reduction of CO2 (i.e. geothermal origin). Most of the samples appear to be affected by secondary microbial oxidation processes

  19. Clinical analysis and treatment of central pain due to headinjury

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    @@Central pain is induced by the involvement of the abnormal pain pathway due to diseases of the central nervous system. Central pain after brain trauma is common clinically, but it is often misdiagnosed and neglected because of lack of objective disturbances. We treated 20 cases of central pain after head injury by invigorating blood circulation and satisfactory result was obtained.

  20. Designing pathways

    DEFF Research Database (Denmark)

    Scheuer, John Damm

    2010-01-01

    The theoretical background in this chapter is organizational studies and especially theories about design and design processes in organizations. The concept of design is defined as a particular kind of work aimed at making arrangements in order to change existing situations into desired ones. The...... illustrative case example is the introduction of clinical pathways in a psychiatric department. The contribution to a general core of design research is the development of the concept of design work and a critical discussion of the role of technological rules in design work....

  1. Record of carbonate preservation and the Mid-Brunhes climatic shift from a seamount top with low sedimentation rates in the Central Indian Basin

    Digital Repository Service at National Institute of Oceanography (India)

    Nath, B.N.; Sijinkumar, A.V.; Borole, D.V.; Gupta, S; Mergulhao, L.P.; Mascarenhas-Pereira, M.B.L.; Ramaswamy, V.; Guptha, M.V.S; Possnert, G.; Aldahan, A.; Khadge, N.H.; Sharma, R.

    the influence of earth’s orbital eccentricity cycles on the monsoonal SSTs for the last ~1.4 Ma in the CIB. Studies based on planktic foraminifera are lacking mainly due to non-availability of well preserved carbonate records. Since much of the sediments...°06.031'S, 75°26.04'E, water depth: 4252 m, core length: 0.40 m) and SVBC 37 (16°06.943'S, 75°25.083'E, water depth: 3992 m, core length: 0.25 m) collected from the top of a seamount during 4th and 26th expeditions of R. V. Akademik Boris Petrov (Fig. 1...

  2. Central control of body temperature.

    Science.gov (United States)

    Morrison, Shaun F

    2016-01-01

    Central neural circuits orchestrate the behavioral and autonomic repertoire that maintains body temperature during environmental temperature challenges and alters body temperature during the inflammatory response and behavioral states and in response to declining energy homeostasis. This review summarizes the central nervous system circuit mechanisms controlling the principal thermoeffectors for body temperature regulation: cutaneous vasoconstriction regulating heat loss and shivering and brown adipose tissue for thermogenesis. The activation of these thermoeffectors is regulated by parallel but distinct efferent pathways within the central nervous system that share a common peripheral thermal sensory input. The model for the neural circuit mechanism underlying central thermoregulatory control provides a useful platform for further understanding of the functional organization of central thermoregulation, for elucidating the hypothalamic circuitry and neurotransmitters involved in body temperature regulation, and for the discovery of novel therapeutic approaches to modulating body temperature and energy homeostasis. PMID:27239289

  3. Central control of body temperature

    Science.gov (United States)

    Morrison, Shaun F.

    2016-01-01

    Central neural circuits orchestrate the behavioral and autonomic repertoire that maintains body temperature during environmental temperature challenges and alters body temperature during the inflammatory response and behavioral states and in response to declining energy homeostasis. This review summarizes the central nervous system circuit mechanisms controlling the principal thermoeffectors for body temperature regulation: cutaneous vasoconstriction regulating heat loss and shivering and brown adipose tissue for thermogenesis. The activation of these thermoeffectors is regulated by parallel but distinct efferent pathways within the central nervous system that share a common peripheral thermal sensory input. The model for the neural circuit mechanism underlying central thermoregulatory control provides a useful platform for further understanding of the functional organization of central thermoregulation, for elucidating the hypothalamic circuitry and neurotransmitters involved in body temperature regulation, and for the discovery of novel therapeutic approaches to modulating body temperature and energy homeostasis. PMID:27239289

  4. Reservoir Characterization for CO2 Sequestration: Assessing the Potential of the Devonian Carbonate Nisku Formation of Central Alberta Caractérisation de réservoir en vue du stockage géologique de CO2 : évaluation du potentiel offert par les carbonates dévoniens de la formation de Nisku, en Alberta central

    Directory of Open Access Journals (Sweden)

    Eisinger C.

    2011-02-01

    Full Text Available The Wabamun Lake area of Central Alberta, Canada includes several large CO2 point source emitters, collectively producing more than 30 Mt annually. Previous studies established that deep saline aquifers beneath the Wabamun Lake area have good potential for the large-scale injection and storage of CO2. This study reports on the characterization of the Devonian carbonate Nisku Formation for evaluation as a CO2 repository. Major challenges for characterization included sparse well and seismic data, poor quality flow tests, and few modern measurements. Wireline porosity measurements were present in only one-third of the wells, so porosity and flow capacity (permeability-thickness were estimated using wireline electrical measurements. The Archie cementation factor appears to vary between 2 and 3, creating uncertainty when predicting porosity using the electrical measurements; however, high-porosity zones could be identified. The electrically-based flow capacity predictions showed more favorable values using a correlation with core than the relation based on drill stem and production tests. This behavior is expected, since the flow test flow capacities are less influenced by local occurrences of very permeable vuggy and moldic rocks. Facies distributions were modeled using both pixel and object methods. The object models, using dimensions obtained from satellite imaging of modern day environments, gave results that were more consistent with the geological understanding of the Nisku and showed greater large-scale connectivity than the pixel model. Predicted volumes show considerable storage capacity in the Nisku, but flow simulations suggest injection capacities are below an initial 20 Mt/year target using vertical wells. More elaborate well designs, including fracture stimulation or multi-lateral wells may allow this goal to be reached or surpassed. Plusieurs gros émetteurs de CO2, totalisant 30 Mt annuels, sont localisés dans la région du Lac

  5. Dissecting the Role of Hedgehog Pathway in Murine Gonadal Development

    Science.gov (United States)

    Barsoum, Ivraym Boshra

    2009-01-01

    Hedgehog (Hh) signaling pathway is one of the universal pathways involved in animal development. This dissertation focuses on Hh role in the mammalian gonad development, which is a central part of mammalian sexual development and identity. The central dogma of mammalian sex development is that genetic sex determines the gonadal sex, which in turn…

  6. The Protective Effects of the Supercritical-Carbon Dioxide Fluid Extract of Chrysanthemum indicum against Lipopolysaccharide-Induced Acute Lung Injury in Mice via Modulating Toll-Like Receptor 4 Signaling Pathway

    Directory of Open Access Journals (Sweden)

    Xiao-Li Wu

    2014-01-01

    Full Text Available The supercritical-carbon dioxide fluid extract of Chrysanthemum indicum Linné. (CFE has been demonstrated to be effective in suppressing inflammation. The aim of this study is to investigate the preventive action and underlying mechanisms of CFE on acute lung injury (ALI induced by lipopolysaccharide (LPS in mice. ALI was induced by intratracheal instillation of LPS into lung, and dexamethasone was used as a positive control. Results revealed that pretreatment with CFE abated LPS-induced lung histopathologic changes, reduced the wet/dry ratio and proinflammatory cytokines productions (TNF-α, IL-1β, and IL-6, inhibited inflammatory cells migrations and protein leakages, suppressed the levels of MPO and MDA, and upregulated the abilities of antioxidative enzymes (SOD, CAT, and GPx. Furthermore, the pretreatment with CFE downregulated the activations of NF-κB and the expressions of TLR4/MyD88. These results suggested that CFE exerted potential protective effects against LPS-induced ALI in mice and was a potential therapeutic drug for ALI. Its mechanisms were at least partially associated with the modulations of TLR4 signaling pathways.

  7. Origin and pathways of pro- and retrograde fluids, PTt paths and fluid-mineral equilibria from Alpine veins of the Central Alps : case studies of the Fibbia and Amsteg areas

    OpenAIRE

    Heijboer, Tjerk Cornelis

    2006-01-01

    In order to constrain the conditions of and processes related to vein formation and the origins of mineralising fluids, field work, multiple geochemical methods applied to whole rocks, minerals, and fluid inclusions, as well as thermodynamic modeling on these veinwall rock systems have been carried out. The focus of this study was on vein and fissure systems from two particular areas in the external parts of the Central Alps: the Fibbia area in the southern Gotthard massif and ...

  8. Characterization of Porosity and Permeability of the Upper Jurassic Arab-D Carbonate Reservoir Using 3D Outcrop Analog, Central Saudi Arabia

    Science.gov (United States)

    Eltom, H.; Makkawi, M.; Abdullatif, O.

    2012-04-01

    Subsurface geological models are considered as a very coarse and low in resolution when compared to the real geology of the reservoir. In this paper a Late Jurassic outcrop analog for Arab-D reservoir, Central Saudi Arabia, was used to build a high resolution outcrop model that can capture the fine geological details. Porosity and permeability derived from the actual subsurface reservoir analog were applied to the outcrop lithofacies. For this purpose data from Ain Dar, Ghwar and Shudgam field were used. Maximum, minimum and average porosity and permeability for every single lithofacies were distributed in the facies model according to their lithofacies type. The result showed nine porosity and nine permeability models for the three field data when using a single geostatistical algorithm. Many realizations were run to see the variability in each model and to quantitatively measure the uncertainty associated with the models. Reservoir potential zones were associated with grainstone, packstone and to some extent wackstone layers. The high resolution lithofacies models allowed detecting permeability barriers and isolated low porosity bodies within the potential reservoir zone. This model gives a chance to examine porosity and permeability distribution along and across very small area of the reservoir rock in the level of one cell dimension of the real subsurface model. It is also highlight on the uncertainty associated with modeling results in terms of algorisms and number of realization used. Consequently, the model is expected to provide better understanding and prediction of reservoir properties and quality at high resolution scale which is unavailable from subsurface data.

  9. Spatial Distribution of Hydrogen Production Zone and Organic Carbon; Case Study from Jurassic Ocean Plateau, the Mikabu Greenstone Belt, Central Shikoku, Japan.

    Science.gov (United States)

    Ando, Y.; Okamoto, K.; Terabayashi, M.

    2014-12-01

    Hydrothermal activity in the Archean-Ridge system has been considered to play a major role to maintain the oldest biosphere in early Earth. In the present ridge-system, hydrogen production in the serpentinized peridotite layer, is considered as major energy source. However, low temperature hydrothermal zone in the lower crust layer in the ridge has been recognized as hydrogen producing zone. Then what is the hydrogen source in the oceanic lower crust? Accreted oceanic plateau is one of the best sample to describe hydration process due to deep-sea-hydrothermal alteration because it is easy to observe huge outcrops and collect samples systematically in whole section. We have collected rock samples from Mikabu high P/T rocks in Toba area and from Ootoyo area, Japan because there are large scale trench cliffs in the mine. Here, we report mineral composition surrounding organic carbon that was found in metabasaltic rocks from Otoyo area. The metabasalt underlies metachert, and exhibit extensive plagioclase veins. Carbonaceous material and FeS are concentrated near the veins. Serpentinization of olivine gabbro was recognized there. In the Toba area, wehrlite and hornblende gabbro are dominant as the oceanic lower crustal material, subsequently suffered high P/T metamorphism. Abundant serpentine with magnetite are along olivine grain boundaries. Cr-spinel and epidote are occasionally recognized. That is, hydrogen was produced due to hydration reaction in the intruded wherlite from the lower crust of the large plateau. In summary, the lower crust might be significant zone producing hydrogen, and provide bacteria cluster above.

  10. Carbon allocation in plants and ecosystems - insights from stable isotope studies

    Science.gov (United States)

    Gessler, Arthur

    2014-05-01

    Trees are large global stores of carbon (C) that will be impacted by increased carbon dioxide levels and climate change. However, at present we cannot properly predict the carbon balance of forests in future as we lack knowledge on how plant physiological processes, the transfer of carbon within the plant, carbon storage, and remobilization in the plant tissues as well as the release of carbon from the roots to the soil interact with environmental drivers and ecosystem-scale processes. This paper will summarise how stable isotope techniques can give new insights in the fate of newly assimilated C in plants and ecosystems on time scales from hours to seasons and it will include studies either characterizing temporal and spatial variation in the natural abundance of carbon and oxygen isotopes or applying isotopically enriched tracers. It comprises the assessment of the mechanisms of C partitioning among specific metabolic pathways, between plant organs and into various ecosystem C pools with different residence times. Moreover stable isotopes are highly suitable tools to characterise the role of the phloem, which is the central long-distance conveyer distributing C from source to sinks and thus plays a central role in linking sites and structures of storage, growth and other metabolic activities. A deeper understanding of these processes and their interaction with environmental drivers is critical for predicting how trees and ecosystems will respond to coming global environmental changes, including increased temperature, altered precipitation, and elevated carbon dioxide concentrations.

  11. Paleogene biomarker records from the central Arctic Ocean (Integrated Ocean Drilling Program Expedition 302): Organic carbon sources, anoxia, and sea surface temperature

    Science.gov (United States)

    Weller, Petra; Stein, Ruediger

    2008-03-01

    During Integrated Ocean Drilling Program Expedition 302 (Arctic Coring Expedition (ACEX)) a more than 200 m thick sequence of Paleogene organic carbon (OC)-rich (black shale type) sediments was drilled. Here we present new biomarker data determined in ACEX sediment samples to decipher processes controlling OC accumulation and their paleoenvironmental significance during periods of Paleogene global warmth and proposed increased freshwater discharge in the early Cenozoic. Specific source-related biomarkers including n-alkanes, fatty acids, isoprenoids, carotenoids, hopanes/hopenes, hopanoic acids, aromatic terpenoids, and long-chain alkenones show a high variability of components, derived from marine and terrestrial origin. The distribution of hopanoic acid isomers is dominated by compounds with the biological 17β(H), 21β(H) configuration indicating a low level of maturity. On the basis of the biomarker data the terrestrial OC supply was significantly enriched during the late Paleocene and part of the earliest Eocene, whereas increased aquatic contributions and euxinic conditions of variable intensity were determined for the Paleocene-Eocene thermal maximum and Eocene thermal maximum 2 events as well as the middle Eocene time interval. Furthermore, samples from the middle Eocene are characterized by the occurrence of long-chain alkenones, high proportions of lycopane, and high ratios (>0.6) of (n-C35 + lycopane)/n-C31. The occurrence of C37-alkenenones, which were first determined toward the end of the Azolla freshwater event, indicates that the OC becomes more marine in origin during the middle Eocene. Preliminary U37K'-based sea surface temperature (SST) values display a long-term temperature decrease of about 15°C during the time interval 49-44.5 Ma (25° to 10°C), coinciding with the global benthic δ18O cooling trend after the early Eocene climatic optimum. At about 46 Ma, parallel with onset of ice-rafted debris, SST (interpreted as summer temperatures

  12. Soil organic matter dynamics and mechanisms of carbon stabilization in soils with conversion from secondary forest to grassland in central Philippines

    Science.gov (United States)

    Navarrete, Ian; Lina, Suzette; Corre, Marife; Veldkamp, Edzo; Asio, Victor

    2013-04-01

    Large portions of the deforested areas in Southeast Asia in general and in the Philippines in particular have been replaced by grassland, but the dynamics between the soil organic carbon (OC) inputs after forest conversion into grassland and the original OC are poorly understood. Also, quantitative data on the C stabilization is important to understand, assess and predict the long term effect of land-use change, but soil C stabilization mechanisms are not fully considered important when studying land-use change. We measured the soil OC content to depths of 100 cm in paired forest and grassland plots across soil types (i.e., Ferralsols, Andosols, Alisols) in Leyte, Philippines. The natural 13C abundance of the soil organic matter was also analyzed to distinguish between forest- and grassland-derived OC in the grassland soils. Oxalate- and pyrophosphate extractable iron and aluminum oxide concentrations were also analyzed and the relationships between soil mineral phase variables and the forest- and grassland-derived OC were examined. Forest-derived OC in the grassland soil accounted for 89-99% of the total OC in Ferralsols, 63-79% of the OC total in Andosols and 56-73% of the total OC in Alfisols. The loss of forest-derived soil OC and the accumulation of newly derived OC were higher in Alfisols that was under grassland for long period compared to the other soils. The decrease in the original OC was higher in the surface soil compared to the lower depths regardless of soil types. Oxalate and pyrophosphate extractable iron and aluminum were found to be the best predictors of OC concentrations in the bulk soil, SOC-derived from forest and SOC-derived from grassland in Andosols, whereas a positive relationship between pyrophosphate-extractable iron and aluminum and soil OC was observed in Ferralsols and Alisols. This result suggests that the accumulation of newly derived OC and the subsequent loss of the original OC were driven by the changes in the mineral

  13. Effects of Conservation Tillage on Topsoil Microbial Metabolic Characteristics and Organic Carbon within Aggregates under a Rice (Oryza sativa L.-Wheat (Triticum aestivum L. Cropping System in Central China.

    Directory of Open Access Journals (Sweden)

    Li-Jin Guo

    Full Text Available Investigating microbial metabolic characteristics and soil organic carbon (SOC within aggregates and their relationships under conservation tillage may be useful in revealing the mechanism of SOC sequestration in conservation tillage systems. However, limited studies have been conducted to investigate the relationship between SOC and microbial metabolic characteristics within aggregate fractions under conservation tillage. We hypothesized that close relationships can exist between SOC and microbial metabolic characteristics within aggregates under conservation tillage. In this study, a field experiment was conducted from June 2011 to June 2013 following a split-plot design of a randomized complete block with tillage practices [conventional intensive tillage (CT and no tillage (NT] as main plots and straw returning methods [preceding crop residue returning (S, 2100-2500 kg C ha-1 and removal (NS, 0 kg C ha(-1] as subplots with three replications. The objective of this study was to reveal the effects of tillage practices and residue-returning methods on topsoil microbial metabolic characteristics and organic carbon (SOC fractions within aggregates and their relationships under a rice-wheat cropping system in central China. Microbial metabolic characteristics investigated using the Biolog system was examined within two aggregate fractions (>0.25 and 0.25 aggregate, and 0.25 mm aggregate (11.3%, and 0.25 mm aggregate, and 0.25 mm aggregate, and 0.25 and 0.25 mm aggregate in the upper (0-5 cm soil layer under conservation tillage systems, as well as directly and indirectly by promoting DOC and MBC in <0.25 mm aggregate. Our results suggested that conservation tillage increased SOC in aggregates in the topsoil by improving microbial metabolic activities.

  14. TrkA、TrkB和TrkC受体在大鼠三叉神经本体觉中枢通路上的表达%XPRESSION OF TrkA, TrkB and TrkC RECEPTORS IN THE CENTRAL PATHWAY OF TRIGEMINAL PROPRIOCEPTION IN THE RAT

    Institute of Scientific and Technical Information of China (English)

    张富兴; 黎振航; 李金莲; 岑國欣; 陳應城

    2004-01-01

    Objective To examine the distribution of high-affinity neurotrophin receptors, viz. TrkA, TrkB and TrkC receptors, in the four-order central pathway of trigeminal proprioception in the rat. Methods Avidin-biotin-peroxidase complex (ABC) method of immunohistochemistry with diaminobenzidine (DAB) as the chromogen was employed to identify the immunoreactive cells. Results All three receptors were detected in the mesencephalic trigeminal nucleus, the second-and third order nuclei iu the central pathway of trigeminal proprioception. Within each of these nuclei, cells immunostained for the three receptors differed in density. TrkA-and TrkB-immunostaining was observed on the cell bodies and processes; TrkB, however,labelled much longer processes. TrkC staining was mainly restricted to the cell bodies. Conclusion In the central pathway of the trigeminal proprioception, each of the three receptors may play a specific role in maintaining the survival of neurons and in regulating the neurotransmitter release.%目的检查高亲和性的神经营养物质受体(TrkA、TrkB和TrkC)在大鼠三叉神经本体觉中枢四级通路上的分布.方法采用免疫组织化学的抗生物素-生物素-过氧化物酶复合物(ABC)方法并以二氨基联苯胺(DAB)为呈色剂,检查免疫反应细胞.结果 3种受体在三叉神经本体觉中枢四级通路的三叉神经中脑核、二级和三级核团均有表达.同一核团内3种受体的免疫阳性细胞密度不同.在胞体和突起上均观察到TrkA和TrkB免疫反应染色,但TrkB标记的突起较长,TrkC染色多局限于细胞体部分.结论在三叉神经本体觉中枢通路中,3种神经营养物质受体都可能在维持神经元存活和调节递质释放等方面发挥特定的作用.

  15. Plant biodiversity and soil nitrogen and carbon pools changes as a result of nitrogen deposition at permanent pine plots in Central Russia

    Science.gov (United States)

    Komarov, Alexander; Priputina, Irina; Zubkova, Elena; Shanin, Vladimir

    2014-05-01

    We present results of analysis of increased rates of atmospheric nitrogen deposition observed in Central Russia between 1960 and 2010, and dealt with air pollution by NOx, on a biodiversity and main pools of C and N in pine forests of Moscow region, Russia. Shifts in nitrogen availability of three pine plots have been analyzed using presence/absence records on dynamics of understory plant communities (chronosequence consisting of four surveys from 1959-61 up to 2003) and a set of specialist plant species as bioindicators of soil richness. Atmospheric N loads received by ecosystems in 1950-1960 were estimated equal 5-7 kg ha-1 yr-1 with N-NH4 prevalence. In 1975-1990, NOx were more severe air contaminants that increased the N loads up to 15-20 kg ha-1 yr-1. Because of the economic decline of soon after 1990, general air pollution and the N deposition rates in Moscow region reduced, but a short time later started to increase again. We assume that those changes might be caused by atmospheric N input rates and to examine this assumption (i) analyze of species composition in understory has been done using Ellenberg indicator values and Tsyganov interval ecological scales developed for European Russia, and (ii) modeling of dynamics of main C and N pools in forest have been additionally carried out using EFIMOD and ROMUL models. Two nitrogen deposition scenarios have been simulated: (i) the steady background rate of N deposition equal to the one in the middle of last century, and (ii) the real ambient level of N depositions in last 50 yrs. Results have confirmed changes of understory species composition sustaining an eutrophication have been revealed in all plots. Number of specialists which mark rich soil conditions increases from 1950 and reaches maximum at 1990 for all plots. There is a difference between sample plots. Increasing number of specialists for rich conditions is very expressed for the richest mixed pine-lime stand and mixed pine-oak stand. Number of

  16. Climate and human impacts on vegetation changes in central Guizhou, China: Carbon and oxygen isotopic records in a stalagmite from Yelang Cave

    Science.gov (United States)

    Lee, T.; Liu, Z.; Li, H.; Shen, C.

    2009-12-01

    High-resolution δ18O and δ13C records of a 13.5-cm long stalagmite from Yelang Cave, 60 km west of Guiyang in the southwestern China, have been established by 750 measurements. With low U (10~40 ppb) and Th (0.01~0.367 ppb), four ICP-MS 230Th/U dates indicate that the upper 5.5 cm part is younger than 1000 years, with clear calcite deposition. Below 6 cm depth where the age suddenly changed from late Holocene to late Pleistocene, the stalagmite shows the deposition alternating between white-pure calcite layers and dark-dirty carbonate layers. The dating samples below 6 cm depth have low U contents (26~41 ppb) but high Th concentrations (10~22 ppb) showing 230Th/U dates ranging from 11 ka to 25 ka with large uncertainties. Based on current chronologies, the δ18O and δ13C records exhibit different features in the late Holocene and late Pleistocene. During the past 1000 yrs (0~5.5 cm), the δ18O ranges from -12.0‰ to -9.0‰ (PDB), containing many 10-100 yrs variations with Δδ18O >1‰. The δ13C during this period varies between -7.4‰ and -1.9‰, showing no correlation with the δ18O. Prior to 10.7 ka (below 6 cm), the δ18O and δ13C strongly co-varied, indicating climatic control on the surface vegetation with wet climates (lighter δ18O) resulting in better vegetation (lighter δ13C). The δ13C during the past 1000 yrs had three long-term increasing trends and a sharp decreasing trend, reflecting human impacts on the surface vegetation. The δ13C increased from about -6‰ at ca. AD 1370 to -3.2‰ around AD 1580, illustrating the first deforestation caused by human activity due to large immigration in Ming Dynasty to the region. The δ13C fluctuated between -4.5‰ and -3.0‰ from AD 1580 to AD 1740, then increased to -2.0‰ around AD 1770 with an opposite δ18O trend. This second deforestation event might be caused a strong immigration in early Qing Dynasty due to mining demand. Karst desertification occurred in the area reflected by heavy δ13C

  17. Quantitative Characterization of the Activation Steps of Mannan-binding Lectin (MBL)-associated Serine Proteases (MASPs) Points to the Central Role of MASP-1 in the Initiation of the Complement Lectin Pathway*

    Science.gov (United States)

    Megyeri, Márton; Harmat, Veronika; Major, Balázs; Végh, Ádám; Balczer, Júlia; Héja, Dávid; Szilágyi, Katalin; Datz, Dániel; Pál, Gábor; Závodszky, Péter; Gál, Péter; Dobó, József

    2013-01-01

    Mannan-binding lectin (MBL)-associated serine proteases, MASP-1 and MASP-2, have been thought to autoactivate when MBL/ficolin·MASP complexes bind to pathogens triggering the complement lectin pathway. Autoactivation of MASPs occurs in two steps: 1) zymogen autoactivation, when one proenzyme cleaves another proenzyme molecule of the same protease, and 2) autocatalytic activation, when the activated protease cleaves its own zymogen. Using recombinant catalytic fragments, we demonstrated that a stable proenzyme MASP-1 variant (R448Q) cleaved the inactive, catalytic site Ser-to-Ala variant (S646A). The autoactivation steps of MASP-1 were separately quantified using these mutants and the wild type enzyme. Analogous mutants were made for MASP-2, and rate constants of the autoactivation steps as well as the possible cross-activation steps between MASP-1 and MASP-2 were determined. Based on the rate constants, a kinetic model of lectin pathway activation was outlined. The zymogen autoactivation rate of MASP-1 is ∼3000-fold higher, and the autocatalytic activation of MASP-1 is about 140-fold faster than those of MASP-2. Moreover, both activated and proenzyme MASP-1 can effectively cleave proenzyme MASP-2. MASP-3, which does not autoactivate, is also cleaved by MASP-1 quite efficiently. The structure of the catalytic region of proenzyme MASP-1 R448Q was solved at 2.5 Å. Proenzyme MASP-1 R448Q readily cleaves synthetic substrates, and it is inhibited by a specific canonical inhibitor developed against active MASP-1, indicating that zymogen MASP-1 fluctuates between an inactive and an active-like conformation. The determined structure provides a feasible explanation for this phenomenon. In summary, autoactivation of MASP-1 is crucial for the activation of MBL/ficolin·MASP complexes, and in the proenzymic phase zymogen MASP-1 controls the process. PMID:23386610

  18. Quantitative characterization of the activation steps of mannan-binding lectin (MBL)-associated serine proteases (MASPs) points to the central role of MASP-1 in the initiation of the complement lectin pathway.

    Science.gov (United States)

    Megyeri, Márton; Harmat, Veronika; Major, Balázs; Végh, Ádám; Balczer, Júlia; Héja, Dávid; Szilágyi, Katalin; Datz, Dániel; Pál, Gábor; Závodszky, Péter; Gál, Péter; Dobó, József

    2013-03-29

    Mannan-binding lectin (MBL)-associated serine proteases, MASP-1 and MASP-2, have been thought to autoactivate when MBL/ficolin·MASP complexes bind to pathogens triggering the complement lectin pathway. Autoactivation of MASPs occurs in two steps: 1) zymogen autoactivation, when one proenzyme cleaves another proenzyme molecule of the same protease, and 2) autocatalytic activation, when the activated protease cleaves its own zymogen. Using recombinant catalytic fragments, we demonstrated that a stable proenzyme MASP-1 variant (R448Q) cleaved the inactive, catalytic site Ser-to-Ala variant (S646A). The autoactivation steps of MASP-1 were separately quantified using these mutants and the wild type enzyme. Analogous mutants were made for MASP-2, and rate constants of the autoactivation steps as well as the possible cross-activation steps between MASP-1 and MASP-2 were determined. Based on the rate constants, a kinetic model of lectin pathway activation was outlined. The zymogen autoactivation rate of MASP-1 is ∼3000-fold higher, and the autocatalytic activation of MASP-1 is about 140-fold faster than those of MASP-2. Moreover, both activated and proenzyme MASP-1 can effectively cleave proenzyme MASP-2. MASP-3, which does not autoactivate, is also cleaved by MASP-1 quite efficiently. The structure of the catalytic region of proenzyme MASP-1 R448Q was solved at 2.5 Å. Proenzyme MASP-1 R448Q readily cleaves synthetic substrates, and it is inhibited by a specific canonical inhibitor developed against active MASP-1, indicating that zymogen MASP-1 fluctuates between an inactive and an active-like conformation. The determined structure provides a feasible explanation for this phenomenon. In summary, autoactivation of MASP-1 is crucial for the activation of MBL/ficolin·MASP complexes, and in the proenzymic phase zymogen MASP-1 controls the process. PMID:23386610

  19. Europa central

    Directory of Open Access Journals (Sweden)

    Karel BARTOSEK

    2010-02-01

    Full Text Available La investigación francesa continúa interesándose por Europa Central. Desde luego, hay límites a este interés en el ambiente general de mi nueva patria: en la ignorancia, producto del largo desinterés de Francia por este espacio después de la Segunda Guerra Mundial, y en el comportamiento y la reflexión de la clase política y de los medios de comunicación (una anécdota para ilustrar este ambiente: durante la preparación de nuestro coloquio «Refugiados e inmigrantes de Europa Central en el movimiento antifascista y la Resistencia en Francia, 1933-1945», celebrado en París en octubre de 1986, el problema de la definición fue planteado concreta y «prácticamente». ¡Y hubo entonces un historiador eminente, para quién Alemania no formaría parte de Europa Central!.

  20. Most blood biomarkers related to vitamin status, one-carbon metabolism, and the kynurenine pathway show adequate preanalytical stability and within-person reproducibility to allow assessment of exposure or nutritional status in healthy women and cardiovascular patients.

    Science.gov (United States)

    Midttun, Oivind; Townsend, Mary K; Nygård, Ottar; Tworoger, Shelley S; Brennan, Paul; Johansson, Mattias; Ueland, Per Magne

    2014-05-01

    Knowledge of stability during sample transportation and changes in biomarker concentrations within person over time are paramount for proper design and interpretation of epidemiologic studies based on a single measurement of biomarker status. Therefore, we investigated stability and intraindividual vs. interindividual variation in blood concentrations of biomarkers related to vitamin status, one-carbon metabolism, and the kynurenine pathway. Whole blood (EDTA and heparin, n = 12) was stored with an icepack for 24 or 48 h, and plasma concentrations of 38 biomarkers were determined. Stability was calculated as change per hour, intraclass correlation coefficient (ICC), and simple Spearman correlation. Within-person reproducibility of biomarkers was expressed as ICC in samples collected 1-2 y apart from 40 postmenopausal women and in samples collected up to 3 y apart from 551 patients with stable angina pectoris. Biomarker stability was similar in EDTA and heparin blood. Most biomarkers were essentially stable, except for choline and total homocysteine (tHcy), which increased markedly. Within-person reproducibility in postmenopausal women was excellent (ICC > 0.75) for cotinine, all-trans retinol, cobalamin, riboflavin, α-tocopherol, Gly, pyridoxal, methylmalonic acid, creatinine, pyridoxal 5'-phosphate, and Ser; was good to fair (ICC of 0.74-0.40) for pyridoxic acid, kynurenine, tHcy, cholecalciferol, flavin mononucleotide, kynurenic acid, xanthurenic acid, 3-hydroxykynurenine, sarcosine, anthranilic acid, cystathionine, homoarginine, 3-hydroxyanthranilic acid, betaine, Arg, folate, total cysteine, dimethylglycine, asymmetric dimethylarginine, neopterin, symmetric dimethylarginine, and Trp; and poor (ICC of 0.39-0.15) for methionine sulfoxide, Met, choline, and trimethyllysine. Similar reproducibilities were observed in patients with coronary heart disease. Thus, most biomarkers investigated were essentially stable in cooled whole blood for up to 48 h and had a

  1. Highly efficient simultaneous ultrasonic assisted adsorption of brilliant green and eosin B onto ZnS nanoparticles loaded activated carbon: Artificial neural network modeling and central composite design optimization

    Science.gov (United States)

    Jamshidi, M.; Ghaedi, M.; Dashtian, K.; Ghaedi, A. M.; Hajati, S.; Goudarzi, A.; Alipanahpour, E.

    2016-01-01

    In this work, central composite design (CCD) combined with response surface methodology (RSM) and desirability function approach (DFA) gives useful information about operational condition and also to obtain useful information about interaction and main effect of variables concerned to simultaneous ultrasound-assisted removal of brilliant green (BG) and eosin B (EB) by zinc sulfide nanoparticles loaded on activated carbon (ZnS-NPs-AC). Spectra overlap between BG and EB dyes was extensively reduced and/or omitted by derivative spectrophotometric method, while multi-layer artificial neural network (ML-ANN) model learned with Levenberg-Marquardt (LM) algorithm was used for building up a predictive model and prediction of the BG and EB removal. The ANN efficiently was able to forecast the simultaneous BG and EB removal that was confirmed by reasonable numerical value i.e. MSE of 0.0021 and R2 of 0.9589 and MSE of 0.0022 and R2 of 0.9455 for testing data set, respectively. The results reveal acceptable agreement among experimental data and ANN predicted results. Langmuir as the best model for fitting experimental data relevant to BG and EB removal indicates high, economic and profitable adsorption capacity (258.7 and 222.2 mg g- 1) that supports and confirms its applicability for wastewater treatment.

  2. Coherence in electron transfer pathways.

    Science.gov (United States)

    Skourtis, Spiros S; Beratan, David N; Waldeck, David H

    2011-01-01

    Central to the view of electron-transfer reactions is the idea that nuclear motion generates a transition state geometry at which the electron/hole amplitude propagates coherently from the electron donor to the electron acceptor. In the weakly coupled or nonadiabatic regime, the electron amplitude tunnels through an electronic barrier between the donor and acceptor. The structure of the barrier is determined by the covalent and noncovalent interactions of the bridge. Because the tunneling barrier depends on the nuclear coordinates of the reactants (and on the surrounding medium), the tunneling barrier is highly anisotropic, and it is useful to identify particular routes, or pathways, along which the transmission amplitude propagates. Moreover, when more than one such pathway exists, and the paths give rise to comparable transmission amplitude magnitudes, one may expect to observe quantum interferences among pathways if the propagation remains coherent. Given that the effective tunneling barrier height and width are affected by the nuclear positions, the modulation of the nuclear coordinates will lead to a modulation of the tunneling barrier and hence of the electron flow. For long distance electron transfer in biological and biomimetic systems, nuclear fluctuations, arising from flexible protein moieties and mobile water bridges, can become quite significant. We discuss experimental and theoretical results that explore the quantum interferences among coupling pathways in electron-transfer kinetics; we emphasize recent data and theories associated with the signatures of chirality and inelastic processes, which are manifested in the tunneling pathway coherence (or absence of coherence). PMID:23833692

  3. Correlation and migration studies of North Central Sumatra oils

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, R.J. [Chevron Texaco Energy Research Technology Company, Richmond, CA (United States); Heidrick, T.; Mertani, B.; Qivayanti [PT Caltex Pacific Indonesia, Rumbai (Indonesia); Li, M. [Geological Survey of Canada, Calgary (China)

    2002-12-01

    The Central Sumatra Basin (CSB) is a profile petroleum-producing basin and its petroleum systems have been extensively studied. The widely occurring Tertiary lacustrine shale, Brown Shale, has long been recognized as the main source rock for tens of billions of barrels of oil in place. The oils produced from different fields display significant variation in source characteristics that have been attributed to variation in source facies. Despite this generalized recognition of the oil source, the links between major oil accumulations and many possible source kitchens throughout the basin have not been established as detailed oil-source correlation, and oil migration routes are not well defined. For continued exploration in the region, detailed genetic grouping and migration routes of the oils were evaluated through geochemical characterization of numerous oils from various fields in the northern part of Central Sumatra. Biomarker and carbon isotopic data indicate that the oils are quite similar geochemically but form several genetic groups on the basis of subtle but persistent differences in source facies. The groupings appear geographically meaningful and show association of the different oil groups with various troughs. Carbazole distributions show consistency in suggesting differences in relative migration distance among the oils within each genetic group. By combining the oil grouping and carbazole distributions with geological data, models of migration directions and pathways for oils in North Central Sumatra have been constructed. (author)

  4. A Central Role for JNK/AP-1 Pathway in the Pro-Oxidant Effect of Pyrrolidine Dithiocarbamate through Superoxide Dismutase 1 Gene Repression and Reactive Oxygen Species Generation in Hematopoietic Human Cancer Cell Line U937

    Science.gov (United States)

    Collin, Pascal; Lomri, Abderrahim

    2015-01-01

    Pyrrolidine dithiocarbamate (PDTC) known as antioxidant and specific inhibitor of NF-κB was also described as pro-oxidant by inducing cell death and reactive oxygen species (ROS) accumulation in cancer. However, the mechanism by which PDTC indices its pro-oxidant effect is unknown. Therefore, we aimed to evaluate the effect of PDTC on the human Cu/Zn superoxide dismutase 1 (SOD1) gene transcription in hematopoietic human cancer cell line U937. We herein show for the first time that PDTC decreases SOD1 transcripts, protein and promoter activity. Furthermore, SOD1 repression by PDTC was associated with an increase in oxidative stress as evidenced by ROS production. Electrophoretic mobility-shift assays (EMSA) show that PDTC increased binding of activating protein-1 (AP-1) in dose dependent-manner suggesting that the MAPkinase up-stream of AP-1 is involved. Ectopic NF-κB p65 subunit overexpression had no effect on SOD1 transcription. In contrast, in the presence of JNK inhibitor (SP600125), p65 induced a marked increase of SOD1 promoter, suggesting that JNK pathway is up-stream of NF-κB signaling and controls negatively its activity. Indeed, using JNK deficient cells, PDTC effect was not observed nether on SOD1 transcription or enzymatic activity, nor on ROS production. Finally, PDTC represses SOD1 in U937 cells through JNK/c-Jun phosphorylation. Taken together, these results suggest that PDTC acts as pro-oxidant compound in JNK/AP-1 dependent-manner by repressing the superoxide dismutase 1 gene leading to intracellular ROS accumulation. PMID:25996379

  5. Geographic and seasonal distributions of CO transport pathways and their roles in determining CO centers in the upper troposphere

    Directory of Open Access Journals (Sweden)

    L. Huang

    2011-12-01

    Full Text Available Past studies have identified various pathways along which carbon monoxide (CO in the tropical upper troposphere (UT may have been transported from the surface. However, the roles that these transport pathways play in determining the locations and seasonality of CO in the tropical UT remain unclear. In particular, UT CO peaks during the spring and fall seasons when surface CO emission and deep atmospheric convection are moderate relative to those observed during winter and summer. We have developed a method to automate the identification of three pathways that transport CO to the UT, which makes joint use of several A-Train satellite measurements. We use this method to show that the locations and seasonality of the major UT CO centers in the tropics during 2007 were largely determined by local convective transport. On average, the "local convection" pathway, in which convection occurred within a fire region, transported significantly more CO to the UT than the "LT advection → convection" pathway, in which CO was advected within the lower troposphere from a fire region to a convective region prior to convection. To leading order, the seasonality of CO concentrations in the tropical UT followed the seasonality of the "local convection" transport pathway. The centers of highest CO peaked over Central Africa during boreal spring and over South America during austral spring, when the "local convection" transport pathway was most prevalent. During boreal winter and summer, surface CO emission and convection were located in opposite hemispheres, limiting the effectiveness of transport to the UT. In these seasons, CO was mainly transported to the UT via the "LT advection → convection" pathway, in which CO was advected within the lower troposphere from fire source regions in the winter hemisphere to convective regions in the summer hemisphere, or via the "UT advection" pathway, in which UT CO was redistributed from the summer hemisphere to the winter

  6. Determination of 222Rn in water by absorption in polydimethylsiloxane mixed with activated carbon and gamma-ray spectrometry: An example application in the radon budget of Paterno submerged sinkhole (Central Italy)

    International Nuclear Information System (INIS)

    Highlights: ► Polydimethylsiloxane and Activated Carbon were used as passive gas accumulator. ► Water-impermeable properties of PDMS combine with adsorptive properties of AC. ► PDMS–AC accumulators can be used to study 222Rn in water. ► Measured 222Rn specific activity in PDMS–AC matches the theoretical results. ► We used PDMS–AC in the radon budget of a submerged sinkhole. - Abstract: Passive gas accumulators made of polydimethylsiloxane (PDMS) mixed with activated C (AC) were studied to measure their efficiency for sampling Rn in water. In this composite the water-impermeable properties of PDMS act synergistically with adsorptive properties of AC, even when the accumulators are immersed in water for many days. A series of tests where cylindrical shaped PDMS–AC disks were exposed to different 222Rn-enriched waters showed that measured 222Rn specific activity matches the theoretical results coming from the equation that describes the process of internal diffusion integrated with the Rn decay term. The linear relationship between 222Rn in water and the accumulation process in PDMS–AC, the influence of temperature and the different sensitivity of the composite and its components were also studied and discussed. The high Rn volumetric enrichment factor in PDMS–AC disks respect to water resulted in about 206: 1, so lowering detection limits for 222Rn in water to 20 Bq m−3 when the total activity of Rn progeny in disks is measured by high resolution gamma-ray spectrometry. The use of PDMS–AC accumulators was tested at the Paterno submerged sinkhole, in central Italy. This study allowed the production of a detailed synchronous vertical profile of the Rn content in the middle of the lake and to define the Rn balance by assessing the discharge rate of submerged springs and the average residence time of the lake water

  7. Preferential use of central metabolism in vivo reveals a nutritional basis for polymicrobial infection.

    Directory of Open Access Journals (Sweden)

    Christopher J Alteri

    2015-01-01

    Full Text Available The human genitourinary tract is a common anatomical niche for polymicrobial infection and a leading site for the development of bacteremia and sepsis. Most uncomplicated, community-acquired urinary tract infections (UTI are caused by Escherichia coli, while another bacterium, Proteus mirabilis, is more often associated with complicated UTI. Here, we report that uropathogenic E. coli and P. mirabilis have divergent requirements for specific central pathways in vivo despite colonizing and occupying the same host environment. Using mutants of specific central metabolism enzymes, we determined glycolysis mutants lacking pgi, tpiA, pfkA, or pykA all have fitness defects in vivo for P. mirabilis but do not affect colonization of E. coli during UTI. Similarly, the oxidative pentose phosphate pathway is required only for P. mirabilis in vivo. In contrast, gluconeogenesis is required only for E. coli fitness in vivo. The remarkable difference in central pathway utilization between E. coli and P. mirabilis during experimental UTI was also observed for TCA cycle mutants in sdhB, fumC, and frdA. The distinct in vivo requirements between these pathogens suggest E. coli and P. mirabilis are not direct competitors within host urinary tract nutritional niche. In support of this, we found that co-infection with E. coli and P. mirabilis wild-type strains enhanced bacterial colonization and persistence of both pathogens during UTI. Our results reveal that complementary utilization of central carbon metabolism facilitates polymicrobial disease and suggests microbial activity in vivo alters the host urinary tract nutritional niche.

  8. Pathways to deep decarbonization in India

    DEFF Research Database (Denmark)

    Shukla, P.; Dhar, Subash; Pathak, Minal;

    This report is a part of the global Deep Decarbonisation Pathways (DDP) Project. The analysis consider two development scenarios for India and assess alternate roadmaps for transiting to a low carbon economy consistent with the globally agreed 2°C stabilization target. The report does not consider...

  9. Focal lesions in the central nervous system

    International Nuclear Information System (INIS)

    This report reviews the animal and human studies currently in progress at LBL with heavy-ion beams to induce focal lesions in the central nervous system, and discusses the potential future prospects of fundamental and applied brain research with heavy-ion beams. Methods are being developed for producing discrete focal lesions in the central nervous system using the Bragg ionization peak to investigate nerve pathways and neuroendocrine responses, and for treating pathological disorders of the brain

  10. Post-Communist Welfare Pathways

    DEFF Research Database (Denmark)

    Cerami, Alfio; Vanhuysse, Pieter

    This collection adopts novel theoretical approaches to study the diverse welfare state pathways that have evolved across Central and Eastern Europe since the fall of communism in 1989. Going beyond existing path dependency and neo-institutionalist explanations, it highlights the role of explanatory...... factors such as micro-causal mechanisms, ideas, discourses, path departures, power politics, and elite strategies. This book includes contributions from leading international Experts such as Claus Offe, Robert Kaufman, Stefan Haggard, Tomasz Inglot, and Mitchell Orenstein, to examine welfare in specific...... lie ahead for welfare state regimes in Central and Eastern Europe. Praise and reviews “'In this conceptually-sophisticated, richly-informed volume, Cerami and Vanhuysse bring together an exceptional group of scholars to debate path dependence and institutional transformation in CEE welfare states. The...

  11. Parallel pathways of ethoxylated alcohol biodegradation under aerobic conditions.

    Science.gov (United States)

    Zembrzuska, Joanna; Budnik, Irena; Lukaszewski, Zenon

    2016-07-01

    Non-ionic surfactants (NS) are a major component of the surfactant flux discharged into surface water, and alcohol ethoxylates (AE) are the major component of this flux. Therefore, biodegradation pathways of AE deserve more thorough investigation. The aim of this work was to investigate the stages of biodegradation of homogeneous oxyethylated dodecanol C12E9 having 9 oxyethylene subunits, under aerobic conditions. Enterobacter strain Z3 bacteria were chosen as biodegrading organisms under conditions with C12E9 as the sole source of organic carbon. Bacterial consortia of river water were used in a parallel test as an inoculum for comparison. The LC-MS technique was used to identify the products of biodegradation. Liquid-liquid extraction with ethyl acetate was selected for the isolation of C12E9 and metabolites from the biodegradation broth. The LC-MS/MS technique operating in the multiple reaction monitoring (MRM) mode was used for quantitative determination of C12E9, C12E8, C12E7 and C12E6. Apart from the substrate, the homologues C12E8, C12E7 and C12E6, being metabolites of C12E9 biodegradation by shortening of the oxyethylene chain, as well as intermediate metabolites having a carboxyl end group in the oxyethylene chain (C12E8COOH, C12E7COOH, C12E6COOH and C12E5COOH), were identified. Poly(ethylene glycols) (E) having 9, 8 and 7 oxyethylene subunits were also identified, indicating parallel central fission of C12E9 and its metabolites. Similar results were obtained with river water as inoculum. It is concluded that AE, under aerobic conditions, are biodegraded via two parallel pathways: by central fission with the formation of PEG, and by Ω-oxidation of the oxyethylene chain with the formation of carboxylated AE and subsequent shortening of the oxyethylene chain by a single unit. PMID:27037882

  12. Pathways to deep decarbonization - 2015 report

    International Nuclear Information System (INIS)

    In September 2015, the Deep Decarbonization Pathways Project published the Executive Summary of the Pathways to Deep Decarbonization: 2015 Synthesis Report. The full 2015 Synthesis Report was launched in Paris on December 3, 2015, at a technical workshop with the Mitigation Action Plans and Scenarios (MAPS) program. The Deep Decarbonization Pathways Project (DDPP) is a collaborative initiative to understand and show how individual countries can transition to a low-carbon economy and how the world can meet the internationally agreed target of limiting the increase in global mean surface temperature to less than 2 degrees Celsius (deg. C). Achieving the 2 deg. C limit will require that global net emissions of greenhouse gases (GHG) approach zero by the second half of the century. In turn, this will require a profound transformation of energy systems by mid-century through steep declines in carbon intensity in all sectors of the economy, a transition we call 'deep decarbonization'

  13. Phosphoketolase Pathway Dominates in Lactobacillus reuteri ATCC 55730 Containing Dual Pathways for Glycolysis▿

    OpenAIRE

    Årsköld, Emma; Lohmeier-Vogel, Elke; Cao, Rong; Roos, Stefan; Rådström, Peter; van Niel, Ed W. J.

    2007-01-01

    Metabolic flux analysis indicated that the heterofermentative Lactobacillus reuteri strain ATCC 55730 uses both the Embden-Meyerhof pathway (EMP) and phosphoketolase pathway (PKP) when glucose or sucrose is converted into the three-carbon intermediate stage of glycolysis. In all cases studied, the main flux is through the PKP, while the EMP is used as a shunt. In the exponential growth phase, 70%, 73%, and 84% of the flux goes through the PKP in cells metabolizing (i) glucose plus fructose, (...

  14. Phosphoketolase pathway dominates in Lactobacillus reuteri ATCC 55730 containing dual pathways for glycolysis

    OpenAIRE

    Årsköld, Emma; Lohmeier-Vogel, Elke; Cao, Rong; Roos, Stefan; Rådström, Peter; van Niel, Ed

    2008-01-01

    Metabolic flux analysis indicated that the heterofermentative Lactobacillus reuteri strain ATCC 55730 uses both the Embden-Meyerhof pathway (EMP) and phosphoketolase pathway (PKP) when glucose or sucrose is converted into the three-carbon intermediate stage of glycolysis. In all cases studied, the main flux is through the PKP, while the EMP is used as a shunt. In the exponential growth phase, 70%, 73%, and 84% of the flux goes through the PKP in cells metabolizing (i) glucose plus fructose, (...

  15. O Herpesvírus bovino tipo 5 (BoHV-5 pode utilizar as rotas olfatória ou trigeminal para invadir o sistema nervoso central de coelhos, dependendo da via de inoculação Bovine herpesvirus 5 may use the olfactory and trigeminal pathways to invade the central nervous system of rabbits, depending upon the route of inoculation

    Directory of Open Access Journals (Sweden)

    Diego Gustavo Diel

    2005-09-01

    resultados demonstram que tanto a via olfatória como a trigeminal podem servir de acesso para o BoHV-5 invadir o cérebro de coelhos inoculados experimentalmente, dependendo da via de inoculação. Inoculação IN resulta em um transporte rápido e eficiente pela via olfatória; com a via trigeminal servindo de acesso mais lento e menos eficiente. Inoculação IC resulta em transporte e invasão eficientes, porém mais tardios, provavelmente pela via trigeminal.Bovine herpesvirus type 5 (BoHV-5 is a major etiological agent of meningoencephalitis in cattle. Following replication in the nasal mucosa, viral invasion of the brain is thought to occur mainly by the olfactory pathway. To address the role of this pathway in the pathogenesis of neurological infection in a laboratory model, 30 days old rabbits had the main olfactory bulbs (MOBs surgically removed and were subsequently inoculated intranasally (IN or conjunctivally (IC with a highly neurovirulent BoHV-5 strain (SV-507. Following IN inoculation, 10 out of 10 (100 % control rabbits developed neurological disease. The clinical onset ranged from day 5 to 10 post-inoculation (pi, average 7.5 days; nine being euthanized in extremis and one recovering after a mild clinical course. In contrast, only one rabbit (9.1 % of the group lacking the MOBs (n=11 developed neurological disease (onset at day 17 pi. Dexamethasone administration to the survivors (n=10 at day 50pi was followed by virus shedding in nasal and/or ocular secretions by 8 animals, demonstrating that the virus was able to reach the trigeminal ganglia (TG during acute infection. These results demonstrate that the olfactory route provides the main, yet not the sole access to the brain of rabbits following IN inoculation. To address the role of a second pathway, groups of control (n=12 or MOB-lacking rabbits (n=12 were inoculated into the conjunctival sac (IC, following which the virus would be expected to use the ophtalmic branch of the trigeminal nerve to reach the

  16. Carbon dioxide, hydrographic, and chemical data obtained in the Central South Pacific Ocean (WOCE sections P17S and P16S) during the tunes-2-expedition of the R/V Thomas Washington, July--August 1991

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1991-12-31

    This data documentation discusses the procedures and methods used to measure total carbon dioxide (TCO{sub 2}), discrete partial pressure of TCO{sub 2} (pCO{sub 2}), and total alkalinity (TALK), during the Research Vessel (R/V) Thomas Washington TUNES Leg 2 Expedition in the central South Pacific Ocean. Conducted as part of the World Ocean Circulation Experiment (WOCE), the cruise began in Papeete, Tahiti, French Polynesia, on July 16, 1991, and returned to Papeete on August 25, 1991. WOCE Meridional Sections P17S along 135{degrees} W and P16S along 150{degrees} W were completed during the 40-day expedition. A total of 97 hydrographic stations were occupied. Hydrographic and chemical measurements made along WOCE Sections P17S and P16S included pressure, temperature, salinity, and oxygen measured by conductivity, temperature and depth sensor; bottle salinity; oxygen; phosphate; nitrate; nitrite; silicate; CFC-12; CFC- 11; TCO{sub 2}; TALK; and pCO{sub 2} measured at 20{degrees}C. The TCO{sub 2} concentration in 1000 seawater samples was determined with a coulometric analysis system, the pCO{sub 2} in 940 water samples was determined with an equilibrator/gas chromatograph system, while the TALK concentration in 139 samples was determined on shore at the laboratory of C. Goyet of Woods Hole Oceanographic Institution with an alkalinity titration system. In addition, 156 coulometric measurements for the Certified Reference Material (Batch {number_sign}6) were made and yielded a mean value of 2303.2 {plus_minus} 1.5 {mu}mol/kg. This mean value agrees within a standard deviation of the 2304.6 {plus_minus} 1.6 {mu}mol/kg (N=9) value determined with the manometer of C. D. Keeling at Scripps Institution of Oceanography (SIO). Replicate samples from 11 Niskin bottles at 4 stations were also collected for later shore-based reference analyses of TCO{sub 2} and TALK by vacuum extraction and manometry in the laboratory of C. D. Keeling of SIO.

  17. Regulation of Peripheral Inflammation by the Central Nervous System

    OpenAIRE

    Waldburger, Jean-Marc; Firestein, Gary S.

    2010-01-01

    In inflammatory disorders such as rheumatoid arthritis, cytokines and danger signals are sensed by the central nervous system, which adapts behavior and physiologic responses during systemic stress. The central nervous system can also signal the periphery to modulate inflammation through efferent hormonal and neuronal pathways. The brain and spinal cord are involved in this bidirectional interaction. A variety of neuronal pathways that modulate synovial inflammation have been implicated, incl...

  18. Uso do modelo de dispersão CAL3QHC na estimação da dispersão de CO na região central de Maringá, Estado do Paraná = Carbon monoxide dispersion estimative in Maringá City’s central area, Paraná State

    Directory of Open Access Journals (Sweden)

    Ed Pinheiro Lima

    2010-07-01

    Full Text Available Este trabalho descreve a aplicação do modelo CAL3QHC para estimar adispersão das emissões de CO originadas de veículos leves na região central da cidade de Maringá, Estado do Paraná. Para a estimativa, foram adotados parâmetros locais do tráfego e meteorológicos e os fatores de emissão foram estimados por meio do modelo de emissão CMEM. A concentração máxima de CO foi estimada para oito sentidos de vento, considerando as emissões de veículos em movimento e em filas de semáforos, de forma separada e em conjunto. O maior valor de concentração foi 4,80 ppm para o sentido de vento N-S, a predominante para o horário analisado. A maioria dos valores de pico de concentração se localizou em uma avenida de grande movimento. Os mapas de concentração permitiram visualizar a concentração de CO, principalmente nesta avenida e nas imediações dos semáforos.This paper describes the application of CAL3QHC model to estimate the dispersion of carbon monoxide emissions originated from the traffic of light duty vehicles within the city center of Maringá, Paraná State. Estimates of emission dispersion were obtained using the local traffic and meteorological parameters and the emission factors determined with CMEM emission model. The maximum concentration of CO was estimated for 8 directions of wind, considering the emissions from moving vehicles and vehicle in queues at traffic lights, isolated and in combination. The highest CO concentration was 4.80 ppm for the predominant NS wind direction during the examined time. Most of the concentration peaks were observed in a busy traffic avenue. The concentration maps allowed viewing the CO concentration, particularly in this avenue and in the area of traffic lights.

  19. Microbially mediated carbon mineralization: Geoengineering a carbon-neutral mine

    Science.gov (United States)

    Power, I. M.; McCutcheon, J.; Harrison, A. L.; Wilson, S. A.; Dipple, G. M.; Southam, G.

    2013-12-01

    Ultramafic and mafic mine tailings are a potentially valuable feedstock for carbon mineralization, affording the mining industry an opportunity to completely offset their carbon emissions. Passive carbon mineralization has previously been documented at the abandoned Clinton Creek asbestos mine, and the active Diavik diamond mine and Mount Keith nickel mine, yet the majority of tailings remain unreacted. Examples of microbe-carbonate interactions at each mine suggest that biological pathways could be harnessed to promote carbon mineralization. In suitable environmental conditions, microbes can mediate geochemical processes to accelerate mineral dissolution, increase the supply of carbon dioxide (CO2), and induce carbonate precipitation, all of which may accelerate carbon mineralization. Tailings mineralogy and the availability of a CO2 point source are key considerations in designing tailings storage facilities (TSF) for optimizing carbon mineralization. We evaluate the efficacy of acceleration strategies including bioleaching, biologically induced carbonate precipitation, and heterotrophic oxidation of waste organics, as well as abiotic strategies including enhancing passive carbonation through modifying tailings management practices and use of CO2 point sources (Fig. 1). With the aim of developing carbon-neutral mines, implementation of carbon mineralization strategies into TSF design will be driven by economic incentives and public pressure for environmental sustainability in the mining industry. Figure 1. Schematic illustrating geoengineered scenarios for carbon mineralization of ultramafic mine tailings. Scenarios A and B are based on non-point and point sources of CO2, respectively.

  20. Central Pathways Integrating Metabolism and Reproduction in Teleosts

    Directory of Open Access Journals (Sweden)

    Md eShahjahan

    2014-03-01

    Full Text Available Energy balance plays an important role in the control of reproduction. However, the cellular and molecular mechanisms connecting the two systems are not well understood especially in teleosts. The hypothalamus plays a crucial role in the regulation of both energy balance and reproduction, and contains a number of neuropeptides, including gonadotropin-releasing hormone (GnRH, orexin, neuropeptide-Y (NPY, ghrelin, pituitary adenylate cyclase-activating polypeptide (PACAP, α-melanocyte stimulating hormone (α-MSH, melanin-concentrating hormone (MCH, cholecystokinin (CCK, 26RFa, nesfatin, kisspeptin, and gonadotropin-inhibitory hormone (GnIH. These neuropeptides are involved in the control of energy balance and reproduction either directly or indirectly. On the other hand, synthesis and release of these hypothalamic neuropeptides are regulated by metabolic signals from the gut and the adipose tissue. Furthermore, neurons producing these neuropeptides interact with each other, providing neuronal basis of the link between energy balance and reproduction. This review summarizes the advances made in our understanding of the physiological roles of the hypothalamic neuropeptides in energy balance and reproduction in teleosts, and discusses how they interact with GnRH, kisspeptin, and pituitary gonadotropins to control reproduction in teleosts.

  1. Central Pain Syndrome

    Science.gov (United States)

    ... Enhancing Diversity Find People About NINDS NINDS Central Pain Syndrome Information Page Table of Contents (click to ... being done? Clinical Trials Organizations What is Central Pain Syndrome? Central pain syndrome is a neurological condition ...

  2. Transformation of carbon tetrachloride via sulfur and oxygen substitution by Pseudomonas sp. strain KC.

    OpenAIRE

    Lewis, T A; Crawford, R L

    1995-01-01

    Pseudomonas sp. strain KC transforms carbon tetrachloride into carbon dioxide and nonvolatile products, without chloroform as an intermediate. To define the pathway for hydrolysis, nonvolatile products were analyzed. Condensation products containing the carbon atom of carbon tetrachloride as carbonyl and thioxo moieties were identified, indicating the intermediacy of phosgene and thiophosgene in the pathway.

  3. Carbon Carbon Composites: An Overview .

    OpenAIRE

    G. Rohini Devi; K. Rama Rao

    1993-01-01

    Carbon carbon composites are a new class of engineering materials that are ceramic in nature but exhibit brittle to pseudoplastic behaviour. Carbon-carbon is a unique all-carbon composite with carbon fibre embeded in carbon matrix and is known as an inverse composite. Due to their excellent thermo-structural properties, carbon-carbon composites are used in specialised application like re-entry nose-tips, leading edges, rocket nozzles, and aircraft brake discs apart from several indust...

  4. Characteristics and sources of black carbon in agricultural soils from a county in central China%华中地区某县农田土壤黑碳分布特征及来源解析

    Institute of Scientific and Technical Information of China (English)

    占长林; 万的军; 王平; 韩永明; 张家泉; 刘红霞; 肖文胜; 刘先利

    2016-01-01

    Background, aim, and scope Black carbon (BC) is a continuum of thermally altered materials produced by incomplete combustion of biomass, biofuels, and fossil fuels. It is found globally in the water, atmosphere, snow, ice, sediments, and soils. BC generally resides in the soil for a long time acting as a long-term C sink, with a potential negative feedback on climate warming. BC is composed of char and soot corresponding to combusted solid residues and clusters of carbon particles formed by gas-phase processes, respectively. Many studies have focused on BC in urban and forestland soils, while little attention is paid to agricultural soils in China. Furthermore, many previous studies did not differentiate between different BC fractions (char and soot) in soils, thereby much important information regarding the sources and environmental behavior of these two major components is missing. In this paper, the variation characteristics of BC, char and soot concentrations in agricultural soils were studied. The impact factor and potential sources of BC were also studied.Materials and methods A total of forty-six topsoil samples (0—20 cm) were collected with steel shovel in farmland from Yangxin County of Hubei Province, central China. The soil types can be classiifed into three categories: paddy soil, red soil, and lfuvo-aquic soil, and the number of soil samples is twenty-three, eighteen, and ifve, respectively. The concentrations of BC, char and soot in soils were analyzed by thermal optical relfectance method following the IMPROVE_A protocol. Total organic carbon (TOC) content was determined using potassium dichromate oxidation method.Results BC, char and soot concentrations in the agricultural soils varied from 0.17 g∙kg−1 to 3.18 g∙kg−1, 0.03 g∙kg−1 to 2.37 g∙kg−1 and 0.09 g∙kg−1 to 1.50 g∙kg−1, with average value of 0.17 g∙kg−1, 0.03 g∙kg−1, and 0.09 g∙kg−1, respectively. The average contents of BC, char and soot in three

  5. CsrA (BB0184) Is Not Involved in Activation of the RpoN-RpoS Regulatory Pathway in Borrelia burgdorferi

    OpenAIRE

    Ouyang, Zhiming; Zhou, Jianli; Norgard, Michael V.

    2014-01-01

    Borrelia burgdorferi encodes a homologue of the bacterial carbon storage regulator A (CsrA). Recently, it was reported that CsrA contributes to B. burgdorferi infectivity and is required for the activation of the central RpoN-RpoS regulatory pathway. However, many questions concerning the function of CsrA in B. burgdorferi gene regulation remain unanswered. In particular, there are conflicting reports concerning the molecular details of how CsrA may modulate rpoS expression and, thus, how Csr...

  6. Thermoelectric power plant conversion from fuel oil to coal with integration of a CO{sub 2} capture plant. Part 1; Conversion de una central termoelectrica de combustoleo a carbon con integracion de una planta de captura de CO{sub 2}. Parte 1

    Energy Technology Data Exchange (ETDEWEB)

    Huante Perez, Liborio; Rodriguez Martinez, J. Hugo; Arriola Medellin, Alejandro M. [Instituto de Investigaciones Electricas, Cuernavaca, Morelos (Mexico)

    2010-11-15

    The major features in the design of power plant conversion from fuel oil to coal, considering the new technical characteristics of fuel and his transportation to plant, equipment required to comply with Mexican environmental standards and additional requirements of auxiliaries are described. In addition, changes needed on power plant design were considered according to integrates CO{sub 2} capture plant alternatives. [Spanish] En este articulo se describen las caracteristicas principales en el diseno de la conversion de Centrales de combustoleo a carbon, considerando el nuevo combustible y su transporte hasta la central, los equipos requeridos para cumplir con las normas ambientales y los requerimientos adicionales de los servicios auxiliares. Adicionalmente, se lleva a cabo el analisis de los cambios requeridos en el diseno de la conversion considerando diferentes opciones para la integracion de una planta de captura de CO{sub 2}, la cual debera entregar este subproducto para su compresion y envio a su destino final para su almacenamiento.