WorldWideScience

Sample records for broom spartium junceum

  1. Experimental control of Spanish broom (Spartium junceum invading natural grasslands

    Directory of Open Access Journals (Sweden)

    Cristina Sanhueza

    2012-12-01

    Full Text Available A group of legumes generically known as brooms are among the most successful shrubs invading grasslands in South America and otherregions. These species share a set of biological features that enhance their invasiveness, such as abundant and long-lasting seed banks,aggressive root systems and rapid growth, combined with their ability for re-sprouting after cutting or burning and for avoiding herbivores.They grow in dense stands that exclude native vegetation and are able to change ecological processes, increasing fire frequency and intensity,and fixing atmospheric nitrogen. The Spanish broom (Spartium junceum is a shrub native form the Mediterranean that was introduced intothe Argentine Pampas grasslands where it spreads over remnants of pristine ecosystems, threatening their biodiversity. This paper reports theresults obtained after an adaptive management strategy aimed at controlling this species in a nature reserve, and compares the efficiency ofdifferent mechanical and chemical control techniques in terms of the number of plants killed and the effects on surrounding vegetation andon the recruitment of broom seedlings. Control was implemented in two phases, the first included three treatments: i cut at the base of theplant, ii cut followed by the immediate application of Togar (Picloram 3% + Triclopyr 6%, at a 5% dilution in diesel oil on top of the cut stump, and iii foliar spraying with Togar. The follow-up treatments, implemented one year later, consisted of spraying the re-sprouts with Togar (5% in diesel oil or Glyphosate 36% (2% in water. The best option in terms of controlling Spanish broom was spraying the resprouts with Togar which gave 100% mortality of the treated plants, compared with values of 40% - 100% re-sprouting for the other optionstested. None of the methods was associated with an increase in seedling recruitment, nor with significant changes in the vegetation in the immediate vicinity of the controlled brooms.

  2. Root reinforcement and slope bioengineering stabilization by Spanish Broom (Spartium junceum L.

    Directory of Open Access Journals (Sweden)

    F. Giadrossich

    2009-09-01

    Full Text Available The present paper deals with the root system's characteristics of Spanish Broom (Spartium junceum L., a species whose capacity for adaptating and resisting to drought is worth investigating. In particular, the aims of the study were 1 to investigate the plant's bio-mechanical aspects and 2 to verify whether root reinforcement and the field rooting ability of stem cuttings enhance its potential for use in slope stabilization and soil bio-engineering techniques, particularly in the Mediterranean areas. Single root specimens were sampled and tested for tensile strength, obtaining classic tensile strength-diameter relationships. Analysis were performed on the root systems in order to assess root density distribution. The Root Area Ratio (RAR was analyzed by taking both direct and indirect measurements, the latter relying on image processing. The data obtained were used to analyze the stability of an artificial slope (landfill and the root reinforcement. The measurement and calculation of mean root number, mean root diameter, RAR, root cohesion and Factor of safety are presented in order to distinguish the effect of plant origin and propagation. Furthermore, tests were performed to assess the possibility of agamic propagation (survival rate of root-ball endowed plants, rooting from stem cuttings. These tests confirmed that agamic propagation is difficult, even though roots were produced from some buried stems, and for practical purposes it has been ruled out. Our results show that Spanish Broom has good bio-mechanical characteristics with regard to slope stabilization, even in critical pedoclimatic conditions and where inclinations are quite steep, and it is effective on soil depths up to about 50 cm, in agreement with other studies on Mediterranean species. It is effective in slope stabilization, but less suitable for soil bio-engineering or for triggering natural plant succession.

  3. Spanish Broom (Spartium junceum L.) fibers impregnated with vancomycin-loaded chitosan nanoparticles as new antibacterial wound dressing: Preparation, characterization and antibacterial activity.

    Science.gov (United States)

    Cerchiara, Teresa; Abruzzo, Angela; Ñahui Palomino, Rogers Alberto; Vitali, Beatrice; De Rose, Renata; Chidichimo, Giuseppe; Ceseracciu, Luca; Athanassiou, Athanassia; Saladini, Bruno; Dalena, Francesco; Bigucci, Federica; Luppi, Barbara

    2017-03-01

    In this work, we propose as new wound dressing, the Spanish Broom fibers impregnated with vancomycin (VM) loaded chitosan nanoparticles. Spanish Broom fibers were extracted by patented method DiCoDe and the morphological, physical and mechanical properties were investigated. Chitosan nanoparticles were prepared by ionic gelation using different weight ratios between chitosan (CH) and tripolyphosphate (TPP). Nanoparticles were characterized in terms of size, zeta potential, yield, encapsulation efficiency, stability and drug release. Finally, the antibacterial activity against Staphylococcus aureus as well as in vitro cytotoxicity on HaCaT cells were evaluated. The best formulation CH/TPP 4:1 was selected based on the encapsulation efficiency and yield. Spanish Broom fibers impregnated with loaded nanoparticles showed an increased antibacterial activity against S. aureus compared to the same fibers containing VM without nanoparticles. Moreover, these fibers were not toxic to HaCaT keratinocytes cells. In conclusion, Spanish Broom fibers impregnated with VM loaded CH/TPP nanoparticles would appear to be a promising candidate for wound dressing application. Copyright © 2016 Elsevier B.V. All rights reserved.

  4. Endogenous isoflavone methylation correlates with the in vitro rooting phases of Spartium junceum L. (Leguminosae).

    Science.gov (United States)

    Clematis, Francesca; Viglione, Serena; Beruto, Margherita; Lanzotti, Virginia; Dolci, Paola; Poncet, Christine; Curir, Paolo

    2014-09-01

    Spartium junceum L. (Leguminosae) is a perennial shrub, native to the Mediterranean region in southern Europe, widespread in all the Italian regions and, as a leguminous species, it has a high isoflavone content. An in vitro culture protocol was developed for this species starting from stem nodal sections of in vivo plants, and isoflavone components of the in vitro cultured tissues were studied by means of High Performance Liquid Chromatography (HPLC) analytical techniques. Two main isoflavones were detected in the S. junceum tissues during the in vitro propagation phases: Genistein (4',5,7-Trihydroxyisoflavone), already reported in this species, and its methylated form 4',5,7-Trimethoxyisoflavone, detected for the first time in this plant species (0.750 ± 0.02 mg g(-1) dry tissue). The presence of both of these compounds in S. junceum tissues was consistently detected during the in vitro multiplication phase. The absence of the methylated form within plant tissues in the early phases of the in vitro adventitious root formation was correlated with its negative effect displayed on root induction and initiation phases, while its presence in the final "root manifestation" phase influenced positively the rooting process. The unmethylated form, although detectable in tissues in the precocious rooting phases, was no longer present in the final rooting phase. Its effect on rooting, however, proved always to be beneficial. Copyright © 2014 Elsevier GmbH. All rights reserved.

  5. [Development of quantitative analyse method for determination of alkaloid cytisin in Spartium junceum L., growing in Georgia].

    Science.gov (United States)

    Iavich, P A; Churadze, L I; Suladze, T Sh; Rukhadze, T A

    2011-12-01

    The aim of the research was to develop a method for quantitative determination of cytisine in Spartium junceum L. We used the above-ground parts of plants. In developing a method of analysis we used the method of 3-phase extraction. In this case the best results were obtained in the system: chopped raw material - water solution of ammonia - chloroform. In this case, the amount of alkaloids extracted almost entirely from the plant and goes into the chloroform phase. Evaluation of the results was carried out by the validation. The method for determination of cytisine in raw product was proposed. The method comprises the following steps-extraction of raw materials extracting chloroform phase and its evaporation, the translation of solids in methanol, the chromatographic separation cytisine and its fixation of the spectrophotometer method. The method is reproducible, has the required accuracy, is easy to analysis (less than 9 hours).

  6. Restoration of Hyperspectral Push-Broom Scanner Data

    DEFF Research Database (Denmark)

    Larsen, Rasmus; Nielsen, Allan Aasbjerg; Conradsen, Knut

    1997-01-01

    Several effects combine to distort the multispectral data that are obtained from push-broom scanners. We develop an algorithm for restoration of such data, illustrated on images from the ROSIS scanner. In push-broom scanners variation between elements in the detector array results in a strong...... back into the original spectral space results in noise corrected variables. The noise components will now have been removed from the entire original data set by working on a smaller set of noise contaminated transformed variables only. The application of the above techniques results in a dramatic...

  7. Seed germination and seedling emergence of Scotch broom (Cytisus scoparius)

    Science.gov (United States)

    Timothy B. Harrington

    2009-01-01

    Scotch broom is a large, leguminous shrub that has invaded 27 U.S. states. The species produces seeds with a hard coat that remain viable in the soil for years. Growth-chamber studies were conducted to determine effects of temperature regime and cold-stratification period on seed germination. Seedling emergence, mortality, and biomass also were studied in response to...

  8. Pruning dwarf mistletoe brooms reduces stress on Jeffrey pines, Cleveland National Forest, California

    Science.gov (United States)

    Robert F. Scharpf; Richard S. Smith; Detlev Vogler

    1987-01-01

    Western dwarf mistletoe (Arceuthobium campylopodum) is a damaging parasite of Jeffrey pines (Pinus jeffreyi) in southern California. Infected branches that develop into brooms are believed to reduce tlee vigor and increase mortality. Brooms were pruned from Jeffrey pines with varying levels of dwarf mistletoe infection and live...

  9. Invasive scotch broom alters soil chemical properties in Douglas-fir forests of the Pacific Northwest, USA

    Science.gov (United States)

    Robert A. Slesak; Timothy B. Harrington; Anthony W. D′Amato

    2016-01-01

    Backgrounds and aims Scotch broom is an N-fixing invasive species that has high potential to alter soil properties. We compared soil from areas of Scotch broom invasion with nearby areas that had no evidence of invasion to assess the influence of broom on soil P fractions and other chemical properties. Methods The study was...

  10. Power generation from landfill gas, Middleton Broom, UK

    International Nuclear Information System (INIS)

    Anon.

    1994-01-01

    A power station is fuelled by gas from a landfill site at Middleton Broom, West Yorkshire in the North of England. The plant was commissioned in January 1993 and has a Declared Net Capacity of about 1.2 MW (enough power for about 700 homes). The electricity produced is exported to the National Grid. After various possible uses of the landfill gas were explored, it was decided that a power station fuelled by the gas was the most commercially viable prospect. Because of the proximity of housing to the landfill site, gas is pumped to the power station, located about 1,500 m from the landfill. (UK)

  11. Broom fibre PRB for heavy metals groundwater remediation

    Science.gov (United States)

    Molinari, A.; Troisi, S.; Fallico, C.; Paparella, A.; Straface, S.

    2009-04-01

    human being. One of the most interesting techniques applied in contaminated aquifer by heavy metals is the PRBs (Troisi et al., 2002; Calvin et al., 2006), in particular broom fibers PRB (Troisi et al., 2008). The first results highlight an optimum removal capacity for contaminants underlined from following removal percentage: 98.01% (Cd), 99.95% (Cu), 97.35% (Pb) and 99.53% (Zn). A fundamental parameter for PRB design is the decay coefficient who indicates the removal capacity (degradation, transformation, adsorption/absorption, mass transport, etc.). This parameter has been determined for four heavy metals: Cadmium (Cd), Copper (Cu), Lead (Pb) and Zinc (Zn) carrying out column tests. Besides, for real use of broom fibers PRB same tests have been performed, using flow cells, to estimate a relation between hydraulic conductivity of fiber and its density. References Chien C. C., H. I. Inyang and L.G. Everett (2006). Barrier Systems for Environmental Contaminant Containment and Treatment. Taylor and Francis Group eds. Troisi S., C. Fallico, S. Straface S. e L. Mazzuca. (2008). Biodreni per la bonifica di siti contaminati realizzati con fibre naturali liberiane ad elevato sviluppo superficiale. CS2008A00018. Università della Calabria. Troisi S, E. Migliari and S. Straface (2002). Soil and groundwater contamination by heavy metals in the industrial area of Crotone. Third International Conference Risk Analysis III. Sintra, Ed. by C.A. Brebbia. WIT Press.

  12. Snowpack, fire, and forest disturbance: interactions affect montane invasions by non-native shrubs.

    Science.gov (United States)

    Stevens, Jens T; Latimer, Andrew M

    2015-06-01

    Montane regions worldwide have experienced relatively low plant invasion rates, a trend attributed to increased climatic severity, low rates of disturbance, and reduced propagule pressure relative to lowlands. Manipulative experiments at elevations above the invasive range of non-native species can clarify the relative contributions of these mechanisms to montane invasion resistance, yet such experiments are rare. Furthermore, global climate change and land use changes are expected to cause decreases in snowpack and increases in disturbance by fire and forest thinning in montane forests. We examined the importance of these factors in limiting montane invasions using a field transplant experiment above the invasive range of two non-native lowland shrubs, Scotch broom (Cytisus scoparius) and Spanish broom (Spartium junceum), in the rain-snow transition zone of the Sierra Nevada of California. We tested the effects of canopy closure, prescribed fire, and winter snow depth on demographic transitions of each species. Establishment of both species was most likely at intermediate levels of canopy disturbance, but at this intermediate canopy level, snow depth had negative effects on winter survival of seedlings. We used matrix population models to show that an 86% reduction in winter snowfall would cause a 2.8-fold increase in population growth rates in Scotch broom and a 3.5-fold increase in Spanish broom. Fall prescribed fire increased germination rates, but decreased overall population growth rates by reducing plant survival. However, at longer fire return intervals, population recovery between fires is likely to keep growth rates high, especially under low snowpack conditions. Many treatment combinations had positive growth rates despite being above the current invasive range, indicating that propagule pressure, disturbance, and climate can all strongly affect plant invasions in montane regions. We conclude that projected reductions in winter snowpack and increases in

  13. Spaceborne L-band Radiometers: Push-broom or Synthetic Aperture?

    DEFF Research Database (Denmark)

    Skou, Niels

    2004-01-01

    L-band radiometers can measure ocean salinity and soil moisture from space. A synthetic aperture radiometer system, SMOS, is under development by ESA for launch in 2007. A real aperture push-broom system, Aquarius, has been approved by NASA for launch in 2008. Pros et cons of the two fundamentally...

  14. Design of a Push-Broom Multi-Beam Radiometer for Future Ocean Observations

    DEFF Research Database (Denmark)

    Cappellin, C.; Pontoppidan, K.; Nielsen, P. H.

    2015-01-01

    The design of a push-broom multi-beam radiometer for future ocean observations is described. The radiometer provides a sensitivity one order of magnitude higher than a traditional conical scanning radiometer, and has the big advantage of being fully stationary relative to the satellite platform...

  15. Dr. Reggie J. Laird Broom: pionero de la ciencia del suelo en México

    Directory of Open Access Journals (Sweden)

    David Espinosa Victoria

    2017-01-01

    Full Text Available A casi tres años de su deceso, la Sociedad Mexicana de la Ciencia del Suelo, A.C. rinde, a través de esta semblanza, un homenaje póstumo a la memoria de uno de los pioneros de la Ciencia del Suelo en México. El trabajo realizado por el Dr. Reggie J. Laird Broom (Figura 1, a lo largo de 45 años, refleja de forma contundente su compromiso y pasión por ayudar a los pequeños productores de México, América Latina y el mundo.

  16. Detection of Russian olive witches’-broom disease and its insect vector in Northwestern Iran

    Directory of Open Access Journals (Sweden)

    Hajizadeh Abasalt

    2017-09-01

    Full Text Available Recently, Russian olive trees showing witches’-broom and little leaf symptoms have been widely observed in northwestern and central Iran. Polymerase chain reaction (PCR and nested PCR assays using phytoplasma universal primer pairs confirmed phytoplasma symptomatic infection of trees. Sequence analyses showed that ‘Candidatus Phytoplasma asteris’ was the causal agent of the disease in these regions. However, RFLP results using restriction enzymes HpaII, EcoRI, HinfI and AluI indicated that the collected isolates in these regions are genetically different. In addition, leafhopper Macropsis infuscata was recognized as a possible insect vector of the disease for the first time.

  17. Impact of sauropod dinosaurs on lagoonal substrates in the Broome Sandstone (Lower Cretaceous, Western Australia.

    Directory of Open Access Journals (Sweden)

    Tony Thulborn

    Full Text Available Existing knowledge of the tracks left by sauropod dinosaurs (loosely 'brontosaurs' is essentially two-dimensional, derived mainly from footprints exposed on bedding planes, but examples in the Broome Sandstone (Early Cretaceous of Western Australia provide a complementary three-dimensional picture showing the extent to which walking sauropods could deform the ground beneath their feet. The patterns of deformation created by sauropods traversing thinly-stratified lagoonal deposits of the Broome Sandstone are unprecedented in their extent and structural complexity. The stacks of transmitted reliefs (underprints or ghost prints beneath individual footfalls are nested into a hierarchy of deeper and more inclusive basins and troughs which eventually attain the size of minor tectonic features. Ultimately the sauropod track-makers deformed the substrate to such an extent that they remodelled the topography of the landscape they inhabited. Such patterns of substrate deformation are revealed by investigating fragmentary and eroded footprints, not by the conventional search for pristine footprints on intact bedding planes. For that reason it is not known whether similar patterns of substrate deformation might occur at sauropod track-sites elsewhere in the world.

  18. Impact of Sauropod Dinosaurs on Lagoonal Substrates in the Broome Sandstone (Lower Cretaceous), Western Australia

    Science.gov (United States)

    Thulborn, Tony

    2012-01-01

    Existing knowledge of the tracks left by sauropod dinosaurs (loosely ‘brontosaurs’) is essentially two-dimensional, derived mainly from footprints exposed on bedding planes, but examples in the Broome Sandstone (Early Cretaceous) of Western Australia provide a complementary three-dimensional picture showing the extent to which walking sauropods could deform the ground beneath their feet. The patterns of deformation created by sauropods traversing thinly-stratified lagoonal deposits of the Broome Sandstone are unprecedented in their extent and structural complexity. The stacks of transmitted reliefs (underprints or ghost prints) beneath individual footfalls are nested into a hierarchy of deeper and more inclusive basins and troughs which eventually attain the size of minor tectonic features. Ultimately the sauropod track-makers deformed the substrate to such an extent that they remodelled the topography of the landscape they inhabited. Such patterns of substrate deformation are revealed by investigating fragmentary and eroded footprints, not by the conventional search for pristine footprints on intact bedding planes. For that reason it is not known whether similar patterns of substrate deformation might occur at sauropod track-sites elsewhere in the world. PMID:22662116

  19. The Scotch broom, Cytisus scoparius (Fabaceae), a paradox in Denmark – an invasive plant or endangered native species?

    DEFF Research Database (Denmark)

    Rosenmeier, Lars; Kjær, Erik Dahl; Nielsen, Lene Rostgaard

    2013-01-01

    Scotch broom, Cytisus scoparius, spreads rapidly in parts of Denmark and is considered an invasive species by some authors. However, the species has been present in the Danish flora for centuries and is therefore considered native to Denmark. In the present study we explore whether Danish Scotch ...

  20. A potential role for an extracellular methanol oxidase secreted by Moniliophthora perniciosa in Witches' broom disease in cacao

    Science.gov (United States)

    The hemibiotrophic basidiomycete fungus Moniliophthora perniciosa, the causal agent of witches’ broom disease (WBD) of cacao, is able to grow in methanol as sole carbon source. In plants, one of the main sources of methanol is the pectin present in the structure of cell walls. Pectin is composed b...

  1. Draft Genome Sequence of a “Candidatus Liberibacter europaeus” Strain Assembled from Broom Psyllids (Arytainilla spartiophila) from New Zealand

    Science.gov (United States)

    Thompson, Sarah M.; Kalamorz, Falk; David, Charles; Addison, Shea M.; Smith, Grant R.

    2018-01-01

    ABSTRACT Here, we report the draft genome sequence of “Candidatus Liberibacter europaeus” ASNZ1, assembled from broom psyllids (Arytainilla spartiophila) from New Zealand. The assembly comprises 15 contigs, with a total length of 1.33 Mb and a G+C content of 33.5%. PMID:29773636

  2. Joint Sandia/NIOSH exercise on aerosol contamination using the BROOM tool.

    Energy Technology Data Exchange (ETDEWEB)

    Ramsey, James L., Jr. (.,; .); Melton, Brad; Finley, Patrick; Brockman, John; Peyton, Chad E.; Tucker, Mark David; Einfeld, Wayne; Brown, Gary Stephen; Griffith, Richard O.; Lucero, Daniel A.; Knowlton, Robert G.; McKenna, Sean Andrew; Ho, Pauline

    2006-06-01

    In February of 2005, a joint exercise involving Sandia National Laboratories (SNL) and the National Institute for Occupational Safety and Health (NIOSH) was conducted in Albuquerque, NM. The SNL participants included the team developing the Building Restoration Operations and Optimization Model (BROOM), a software product developed to expedite sampling and data management activities applicable to facility restoration following a biological contamination event. Integrated data-collection, data-management, and visualization software improve the efficiency of cleanup, minimize facility downtime, and provide a transparent basis for reopening. The exercise was held at an SNL facility, the Coronado Club, a now-closed social club for Sandia employees located on Kirtland Air Force Base. Both NIOSH and SNL had specific objectives for the exercise, and all objectives were met.

  3. Broome virus, a new fusogenic Orthoreovirus species isolated from an Australian fruit bat

    International Nuclear Information System (INIS)

    Thalmann, Claudia M.; Cummins, David Michael; Yu Meng; Lunt, Ross; Pritchard, Lindsay Ian; Hansson, Eric; Crameri, Sandra; Hyatt, Alex; Wang Linfa

    2010-01-01

    This report describes the discovery and characterization of a new fusogenic orthoreovirus, Broome virus (BroV), isolated from a little red flying-fox (Pteropus scapulatus). The BroV genome consists of 10 dsRNA segments, each having a 3' terminal pentanucleotide sequence conserved amongst all members of the genus Orthoreovirus, and a unique 5' terminal pentanucleotide sequence. The smallest genome segment is bicistronic and encodes two small nonstructural proteins, one of which is a novel fusion associated small transmembrane (FAST) protein responsible for syncytium formation, but no cell attachment protein. The low amino acid sequence identity between BroV proteins and those of other orthoreoviruses (13-50%), combined with phylogenetic analyses of structural and nonstructural proteins provide evidence to support the classification of BroV in a new sixth species group within the genus Orthoreovirus.

  4. Microwave integrated circuit radiometer front-ends for the Push Broom Microwave Radiometer

    Science.gov (United States)

    Harrington, R. F.; Hearn, C. P.

    1982-01-01

    Microwave integrated circuit front-ends for the L-band, S-band and C-band stepped frequency null-balanced noise-injection Dicke-switched radiometer to be installed in the NASA Langley airborne prototype Push Broom Microwave Radiometer (PBMR) are described. These front-ends were developed for the fixed frequency of 1.413 GHz and the variable frequencies of 1.8-2.8 GHz and 3.8-5.8 GHz. Measurements of the noise temperature of these units were made at 55.8 C, and the results of these tests are given. While the overall performance was reasonable, improvements need to be made in circuit losses and noise temperatures, which in the case of the C-band were from 1000 to 1850 K instead of the 500 K specified. Further development of the prototypes is underway to improve performance and extend the frequency range.

  5. Ultrasonically facilitated adsorption of an azo dye onto nanostructures obtained from cellulosic wastes of broom and cooler straw.

    Science.gov (United States)

    Safari, Mahdi; Khataee, Alireza; Darvishi Cheshmeh Soltani, Reza; Rezaee, Reza

    2018-07-15

    In the present work, ultrasonically facilitated adsorption (UFA) of a cationic dye [Basic Red 46 (BR46)] was examined using cellulosic nanostructures obtained from broom and cooler straw. Although the exclusive application of the nanostructured broom resulted in the 43.51% adsorption of BR46, the UFA process gave rise to the substantial removal efficiency of about 93%. In the case of the nanostructured straw, the efficiency was increased from 36.9% to 55.7%. The UFA process for both adsorbents reached the equilibrium within 60 min which was shorter than the time for the only adsorption. According to the values of the mean free energy (E), the decolorization via the UFA process applying broom (15.81 kJ/mol) and straw (11.18 kJ/mol) nanostructures was occurred chemically. An insignificant loss in the adsorption capacity of both adsorbents was observed after three regeneration tests by means of 0.05 M hydrochloric acid, indicating the good reusability potential of the as-synthesized cellulosic nanostructures. Copyright © 2018 Elsevier Inc. All rights reserved.

  6. Screening the phytoremediation potential of desert broom (Baccharis sarothroides Gray) growing on mine tailings in Arizona, USA

    International Nuclear Information System (INIS)

    Haque, Nazmul; Peralta-Videa, Jose R.; Jones, Gary L.; Gill, Thomas E.; Gardea-Torresdey, Jorge L.

    2008-01-01

    The metal concentrations in a copper mine tailings and desert broom (Baccharis sarothroides Gray) plants were investigated. The metal concentrations in plants, soil cover, and tailings were determined using ICP-OES. The concentration of copper, lead, molybdenum, chromium, zinc, arsenic, nickel, and cobalt in tailings was 526.4, 207.4, 89.1, 84.5, 51.7, 49.6, 39.7, and 35.6 mg kg -1 , respectively. The concentration of all elements in soil cover was 10-15% higher than that of the tailings, except for molybdenum. The concentration of copper, lead, molybdenum, chromium, zinc, arsenic, nickel, and cobalt in roots was 818.3, 151.9, 73.9, 57.1, 40.1, 44.6, 96.8, and 26.7 mg kg -1 and 1214.1, 107.3, 105.8, 105.5, 55.2, 36.9, 30.9, and 10.9 mg kg -1 for shoots, respectively. Considering the translocation factor, enrichment coefficient, and the accumulation factor, desert broom could be a potential hyperaccumulator of Cu, Pb, Cr, Zn, As, and Ni. - Desert broom, a potential hyperaccumulating plant to clean up Cu, Pb, Cr, Zn, As, Ni and Co from the mine tailings in AZ, USA

  7. Screening the phytoremediation potential of desert broom (Baccharis sarothroides Gray) growing on mine tailings in Arizona, USA

    Energy Technology Data Exchange (ETDEWEB)

    Haque, Nazmul [Environmental Science and Engineering PhD Program, University of Texas at El Paso, El Paso, TX 79968 (United States); Peralta-Videa, Jose R. [Department of Chemistry, University of Texas at El Paso, El Paso, TX 79968 (United States); Jones, Gary L. [Phelps Dodge Miami Inc, P.O. Box 4444, Claypool, AZ 85532 (United States); Gill, Thomas E. [Department of Geological Science, University of Texas at El Paso, El Paso, TX 79968 (United States); Gardea-Torresdey, Jorge L. [Environmental Science and Engineering PhD Program, University of Texas at El Paso, El Paso, TX 79968 (United States); Department of Chemistry, University of Texas at El Paso, El Paso, TX 79968 (United States)], E-mail: jgardea@utep.edu

    2008-05-15

    The metal concentrations in a copper mine tailings and desert broom (Baccharis sarothroides Gray) plants were investigated. The metal concentrations in plants, soil cover, and tailings were determined using ICP-OES. The concentration of copper, lead, molybdenum, chromium, zinc, arsenic, nickel, and cobalt in tailings was 526.4, 207.4, 89.1, 84.5, 51.7, 49.6, 39.7, and 35.6 mg kg{sup -1}, respectively. The concentration of all elements in soil cover was 10-15% higher than that of the tailings, except for molybdenum. The concentration of copper, lead, molybdenum, chromium, zinc, arsenic, nickel, and cobalt in roots was 818.3, 151.9, 73.9, 57.1, 40.1, 44.6, 96.8, and 26.7 mg kg{sup -1} and 1214.1, 107.3, 105.8, 105.5, 55.2, 36.9, 30.9, and 10.9 mg kg{sup -1} for shoots, respectively. Considering the translocation factor, enrichment coefficient, and the accumulation factor, desert broom could be a potential hyperaccumulator of Cu, Pb, Cr, Zn, As, and Ni. - Desert broom, a potential hyperaccumulating plant to clean up Cu, Pb, Cr, Zn, As, Ni and Co from the mine tailings in AZ, USA.

  8. Additional collection devices used in conjunction with the SurePath Liquid-Based Pap Test broom device do not enhance diagnostic utility

    Directory of Open Access Journals (Sweden)

    O'Connor Jason C

    2004-09-01

    Full Text Available Abstract Background We have previously shown that use of an EC brush device in combination with the Rovers Cervex-Brush (SurePath broom offered no significant improvement in EC recovery. Here we determine if use of additional collection devices enhance the diagnostic utility of the SurePath Pap for gynecologic cytology. Methods After informed consent, 37 women ages 18–56 receiving their routine cervical examinations were randomized into four experimental groups. Each group was first sampled with the SurePath broom then immediately re-sampled with an additional collection device or devices. Group 1: Rover endocervix brush (n = 8. Group 2: Medscand CytoBrush Plus GT (n = 7. Group 3: Rover spatula + endocervix brush (n = 11. Group 4: Medscand spatula + CytoBrush Plus GT (n = 11. Results Examination of SurePath broom-collected cytology yielded the following abnormal diagnoses: atypia (n = 2, LSIL (n = 5 and HSIL (n = 3. Comparison of these diagnoses to those obtained from paired samples using the additional collection devices showed that use of a second and or third device yielded no additional abnormal diagnoses. Importantly, use of additional devices did not improve upon the abnormal cell recovery of the SurePath broom and in 4/10 cases under-predicted or did not detect the SurePath broom-collected lesion as confirmed by cervical biopsy. Finally, in 36/37 cases, the SurePath broom successfully recovered ECs. Use of additional devices, in Group 3, augmented EC recovery to 37/37. Conclusions Use of additional collection devices in conjunction with the SurePath broom did not enhance diagnostic utility of the SurePath Pap. A potential but not significant improvement in EC recovery might be seen with the use of three devices.

  9. Evaluation of onboard hyperspectral-image compression techniques for a parallel push-broom sensor

    Energy Technology Data Exchange (ETDEWEB)

    Briles, S.

    1996-04-01

    A single hyperspectral imaging sensor can produce frames with spatially-continuous rows of differing, but adjacent, spectral wavelength. If the frame sample-rate of the sensor is such that subsequent hyperspectral frames are spatially shifted by one row, then the sensor can be thought of as a parallel (in wavelength) push-broom sensor. An examination of data compression techniques for such a sensor is presented. The compression techniques are intended to be implemented onboard a space-based platform and to have implementation speeds that match the date rate of the sensor. Data partitions examined extend from individually operating on a single hyperspectral frame to operating on a data cube comprising the two spatial axes and the spectral axis. Compression algorithms investigated utilize JPEG-based image compression, wavelet-based compression and differential pulse code modulation. Algorithm performance is quantitatively presented in terms of root-mean-squared error and root-mean-squared correlation coefficient error. Implementation issues are considered in algorithm development.

  10. Cacao Phylloplane: The First Battlefield against Moniliophthora perniciosa, Which Causes Witches' Broom Disease.

    Science.gov (United States)

    Almeida, D S M; Gramacho, K P; Cardoso, T H S; Micheli, F; Alvim, F C; Pirovani, C P

    2017-07-01

    The phylloplane is the first contact surface between Theobroma cacao and the fungus Moniliophthora perniciosa, which causes witches' broom disease (WBD). We evaluated the index of short glandular trichomes (SGT) in the cacao phylloplane and the effect of irrigation on the disease index of cacao genotypes with or without resistance to WBD, and identified proteins present in the phylloplane. The resistant genotype CCN51 and susceptible Catongo presented a mean index of 1,600 and 700 SGT cm -2 , respectively. The disease index in plants under drip irrigation was reduced by approximately 30% compared with plants under sprinkler irrigation prior to inoculation. Leaf water wash (LWW) of the cacao inhibited the germination of spores by up to 98%. Proteins from the LWW of CCN51 were analyzed by two-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis followed by tandem mass spectrometry. The gel showed 71 spots and identified a total of 42 proteins (28 from the plant and 14 from bacteria). Proteins related to defense and synthesis of defense metabolites and involved in nucleic acid metabolism were identified. The results support the hypothesis that the proteins and water-soluble compounds secreted to the cacao phylloplane participate in the defense against pathogens. They also suggest that SGT can contribute to the resistance of cacao.

  11. Apoplastic and intracellular plant sugars regulate developmental transitions in witches' broom disease of cacao.

    Science.gov (United States)

    Barau, Joan; Grandis, Adriana; Carvalho, Vinicius Miessler de Andrade; Teixeira, Gleidson Silva; Zaparoli, Gustavo Henrique Alcalá; do Rio, Maria Carolina Scatolin; Rincones, Johana; Buckeridge, Marcos Silveira; Pereira, Gonçalo Amarante Guimarães

    2015-03-01

    Witches' broom disease (WBD) of cacao differs from other typical hemibiotrophic plant diseases by its unusually long biotrophic phase. Plant carbon sources have been proposed to regulate WBD developmental transitions; however, nothing is known about their availability at the plant-fungus interface, the apoplastic fluid of cacao. Data are provided supporting a role for the dynamics of soluble carbon in the apoplastic fluid in prompting the end of the biotrophic phase of infection. Carbon depletion and the consequent fungal sensing of starvation were identified as key signalling factors at the apoplast. MpNEP2, a fungal effector of host necrosis, was found to be up-regulated in an autophagic-like response to carbon starvation in vitro. In addition, the in vivo artificial manipulation of carbon availability in the apoplastic fluid considerably modulated both its expression and plant necrosis rate. Strikingly, infected cacao tissues accumulated intracellular hexoses, and showed stunted photosynthesis and the up-regulation of senescence markers immediately prior to the transition to the necrotrophic phase. These opposite findings of carbon depletion and accumulation in different host cell compartments are discussed within the frame of WBD development. A model is suggested to explain phase transition as a synergic outcome of fungal-related factors released upon sensing of extracellular carbon starvation, and an early senescence of infected tissues probably triggered by intracellular sugar accumulation. © The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  12. Apoplastic and intracellular plant sugars regulate developmental transitions in witches’ broom disease of cacao

    Science.gov (United States)

    Barau, Joan; Grandis, Adriana; Carvalho, Vinicius Miessler de Andrade; Teixeira, Gleidson Silva; Zaparoli, Gustavo Henrique Alcalá; do Rio, Maria Carolina Scatolin; Rincones, Johana; Buckeridge, Marcos Silveira; Pereira, Gonçalo Amarante Guimarães

    2015-01-01

    Witches’ broom disease (WBD) of cacao differs from other typical hemibiotrophic plant diseases by its unusually long biotrophic phase. Plant carbon sources have been proposed to regulate WBD developmental transitions; however, nothing is known about their availability at the plant–fungus interface, the apoplastic fluid of cacao. Data are provided supporting a role for the dynamics of soluble carbon in the apoplastic fluid in prompting the end of the biotrophic phase of infection. Carbon depletion and the consequent fungal sensing of starvation were identified as key signalling factors at the apoplast. MpNEP2, a fungal effector of host necrosis, was found to be up-regulated in an autophagic-like response to carbon starvation in vitro. In addition, the in vivo artificial manipulation of carbon availability in the apoplastic fluid considerably modulated both its expression and plant necrosis rate. Strikingly, infected cacao tissues accumulated intracellular hexoses, and showed stunted photosynthesis and the up-regulation of senescence markers immediately prior to the transition to the necrotrophic phase. These opposite findings of carbon depletion and accumulation in different host cell compartments are discussed within the frame of WBD development. A model is suggested to explain phase transition as a synergic outcome of fungal-related factors released upon sensing of extracellular carbon starvation, and an early senescence of infected tissues probably triggered by intracellular sugar accumulation. PMID:25540440

  13. Identification of genes related to Paulownia witches' broom by AFLP and MSAP.

    Science.gov (United States)

    Cao, Xibing; Fan, Guoqiang; Deng, Minjie; Zhao, Zhenli; Dong, Yanpeng

    2014-08-21

    DNA methylation is believed to play important roles in regulating gene expression in plant growth and development. Paulownia witches' broom (PaWB) infection has been reported to be related to gene expression changes in paulownia plantlets. To determine whether DNA methylation is associated with gene expression changes in response to phytoplasma, we investigated variations in genomic DNA sequence and methylation in PaWB plantlets treated with methyl methane sulfonate (MMS) using amplified fragment length polymorphism (AFLP) and methylation-sensitive amplification polymorphism (MSAP) techniques, respectively. The results indicated that PaWB seedings recovered a normal morphology after treatment with more than 15 mg·L(-1) MMS. PaWB infection did not cause changes of the paulownia DNA sequence at the AFLP level; However, DNA methylation levels and patterns were altered. Quantitative real-time PCR (qRT-PCR) showed that three of the methylated genes were up-regulated and three were down-regulated in the MMS-treated PaWB plantlets that had regained healthy morphology. These six genes might be involved in transcriptional regulation, plant defense, signal transduction and energy. The possible roles of these genes in PaWB are discussed. The results showed that changes of DNA methylation altered gene expression levels, and that MSAP might help identify genes related to PaWB.

  14. Identification of Genes Related to Paulownia Witches’ Broom by AFLP and MSAP

    Science.gov (United States)

    Cao, Xibing; Fan, Guoqiang; Deng, Minjie; Zhao, Zhenli; Dong, Yanpeng

    2014-01-01

    DNA methylation is believed to play important roles in regulating gene expression in plant growth and development. Paulownia witches’ broom (PaWB) infection has been reported to be related to gene expression changes in paulownia plantlets. To determine whether DNA methylation is associated with gene expression changes in response to phytoplasma, we investigated variations in genomic DNA sequence and methylation in PaWB plantlets treated with methyl methane sulfonate (MMS) using amplified fragment length polymorphism (AFLP) and methylation-sensitive amplification polymorphism (MSAP) techniques, respectively. The results indicated that PaWB seedings recovered a normal morphology after treatment with more than 15 mg·L−1 MMS. PaWB infection did not cause changes of the paulownia DNA sequence at the AFLP level; However, DNA methylation levels and patterns were altered. Quantitative real-time PCR (qRT-PCR) showed that three of the methylated genes were up-regulated and three were down-regulated in the MMS-treated PaWB plantlets that had regained healthy morphology. These six genes might be involved in transcriptional regulation, plant defense, signal transduction and energy. The possible roles of these genes in PaWB are discussed. The results showed that changes of DNA methylation altered gene expression levels, and that MSAP might help identify genes related to PaWB. PMID:25196603

  15. Identification of Genes Related to Paulownia Witches’ Broom by AFLP and MSAP

    Directory of Open Access Journals (Sweden)

    Xibing Cao

    2014-08-01

    Full Text Available DNA methylation is believed to play important roles in regulating gene expression in plant growth and development. Paulownia witches’ broom (PaWB infection has been reported to be related to gene expression changes in paulownia plantlets. To determine whether DNA methylation is associated with gene expression changes in response to phytoplasma, we investigated variations in genomic DNA sequence and methylation in PaWB plantlets treated with methyl methane sulfonate (MMS using amplified fragment length polymorphism (AFLP and methylation-sensitive amplification polymorphism (MSAP techniques, respectively. The results indicated that PaWB seedings recovered a normal morphology after treatment with more than 15 mg·L−1 MMS. PaWB infection did not cause changes of the paulownia DNA sequence at the AFLP level; However, DNA methylation levels and patterns were altered. Quantitative real-time PCR (qRT-PCR showed that three of the methylated genes were up-regulated and three were down-regulated in the MMS-treated PaWB plantlets that had regained healthy morphology. These six genes might be involved in transcriptional regulation, plant defense, signal transduction and energy. The possible roles of these genes in PaWB are discussed. The results showed that changes of DNA methylation altered gene expression levels, and that MSAP might help identify genes related to PaWB.

  16. Survey of Leafhopper Species in Almond Orchards Infected with Almond Witches'-Broom Phytoplasma in Lebanon

    Science.gov (United States)

    Hammad, Efat Abou-Fakhr; El-Mohtar, Choaa; Abou-Jawdah, Yusuf

    2011-01-01

    Leafhoppers (Hemiptera: Auchenorrhyncha: Cicadellidae) account for more than 80% of all “Auchenorrhynchous” vectors that transmit phytoplasmas. The leafhopper populations in two almond witches'-broom phytoplasma (AlmWB) infected sites: Tanboureet (south of Lebanon) and Bourj El Yahoudieh (north of Lebanon) were surveyed using yellow sticky traps. The survey revealed that the most abundant species was Asymmetrasca decedens, which represented 82.4% of all the leafhoppers sampled. Potential phytoplasma vectors in members of the subfamilies Aphrodinae, Deltocephalinae, and Megophthalminae were present in very low numbers including: Aphrodes makarovi, Cicadulina bipunctella, Euscelidius mundus, Fieberiella macchiae, Allygus theryi, Circulifer haematoceps, Neoaliturus transversalis, and Megophthalmus scabripennis. Allygus theryi (Horváth) (Deltocephalinae) was reported for the first time in Lebanon. Nested PCR analysis and sequencing showed that Asymmetrasca decedens, Empoasca decipiens, Fieberiella macchiae, Euscelidius mundus, Thamnottetix seclusis, Balclutha sp., Lylatina inexpectata, Allygus sp., and Annoplotettix danutae were nine potential carriers of AlmWB phytoplasma. Although the detection of phytoplasmas in an insect does not prove a definite vector relationship, the technique is useful in narrowing the search for potential vectors. The importance of this information for management of AlmWB is discussed. PMID:21864154

  17. Cultivation, production and management techniques of broom grass (Thysanolaena maxima Roxb. in hilly areas of Bangladesh

    Directory of Open Access Journals (Sweden)

    Mohammod Jahangir Alam

    2017-02-01

    Full Text Available This paper presents the results on appropriate cultivation, plantation, production and management techniques of Thysanolaena maxima for domestication at age 1–4 yr (grown 2007–2011. Rhizome cuttings were planted in research experimental plots at spacings of T1 = 1.0 m × 1.0 m, T2 = 1.5 m × 1.5 m and T3 = 2.0 m × 2.0 m in a randomized complete block design with six replications and three treatments. The results showed that the number of panicles produced was 1048, 41,237, 78,737 and 105,094 in year 1 to year 4, respectively. The average total green weight (kg/plot was 10.26, 632.15, 423.34 and 543.40 and the average dry weight (kg/plot was 9.88, 287.65, 216.93 and 241.60 in year 1 to year 4, respectively. Composite soil samples were collected and the soil pH values of the surface soil from the different treatments varied from 5.1 to 5.2. There was no significant difference among the treatments in the available P and S. The available Ca, Mg and K were higher in the T3 treatment compared with the other treatments. Planting rhizome cuttings at 2.0 m × 2.0 m spacing gave the maximum broom/panicle production.

  18. A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao.

    Science.gov (United States)

    Mondego, Jorge M C; Carazzolle, Marcelo F; Costa, Gustavo G L; Formighieri, Eduardo F; Parizzi, Lucas P; Rincones, Johana; Cotomacci, Carolina; Carraro, Dirce M; Cunha, Anderson F; Carrer, Helaine; Vidal, Ramon O; Estrela, Raíssa C; García, Odalys; Thomazella, Daniela P T; de Oliveira, Bruno V; Pires, Acássia Bl; Rio, Maria Carolina S; Araújo, Marcos Renato R; de Moraes, Marcos H; Castro, Luis A B; Gramacho, Karina P; Gonçalves, Marilda S; Neto, José P Moura; Neto, Aristóteles Góes; Barbosa, Luciana V; Guiltinan, Mark J; Bailey, Bryan A; Meinhardt, Lyndel W; Cascardo, Julio Cm; Pereira, Gonçalo A G

    2008-11-18

    The basidiomycete fungus Moniliophthora perniciosa is the causal agent of Witches' Broom Disease (WBD) in cacao (Theobroma cacao). It is a hemibiotrophic pathogen that colonizes the apoplast of cacao's meristematic tissues as a biotrophic pathogen, switching to a saprotrophic lifestyle during later stages of infection. M. perniciosa, together with the related species M. roreri, are pathogens of aerial parts of the plant, an uncommon characteristic in the order Agaricales. A genome survey (1.9x coverage) of M. perniciosa was analyzed to evaluate the overall gene content of this phytopathogen. Genes encoding proteins involved in retrotransposition, reactive oxygen species (ROS) resistance, drug efflux transport and cell wall degradation were identified. The great number of genes encoding cytochrome P450 monooxygenases (1.15% of gene models) indicates that M. perniciosa has a great potential for detoxification, production of toxins and hormones; which may confer a high adaptive ability to the fungus. We have also discovered new genes encoding putative secreted polypeptides rich in cysteine, as well as genes related to methylotrophy and plant hormone biosynthesis (gibberellin and auxin). Analysis of gene families indicated that M. perniciosa have similar amounts of carboxylesterases and repertoires of plant cell wall degrading enzymes as other hemibiotrophic fungi. In addition, an approach for normalization of gene family data using incomplete genome data was developed and applied in M. perniciosa genome survey. This genome survey gives an overview of the M. perniciosa genome, and reveals that a significant portion is involved in stress adaptation and plant necrosis, two necessary characteristics for a hemibiotrophic fungus to fulfill its infection cycle. Our analysis provides new evidence revealing potential adaptive traits that may play major roles in the mechanisms of pathogenicity in the M. perniciosa/cacao pathosystem.

  19. A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao

    Directory of Open Access Journals (Sweden)

    Bailey Bryan A

    2008-11-01

    Full Text Available Abstract Background The basidiomycete fungus Moniliophthora perniciosa is the causal agent of Witches' Broom Disease (WBD in cacao (Theobroma cacao. It is a hemibiotrophic pathogen that colonizes the apoplast of cacao's meristematic tissues as a biotrophic pathogen, switching to a saprotrophic lifestyle during later stages of infection. M. perniciosa, together with the related species M. roreri, are pathogens of aerial parts of the plant, an uncommon characteristic in the order Agaricales. A genome survey (1.9× coverage of M. perniciosa was analyzed to evaluate the overall gene content of this phytopathogen. Results Genes encoding proteins involved in retrotransposition, reactive oxygen species (ROS resistance, drug efflux transport and cell wall degradation were identified. The great number of genes encoding cytochrome P450 monooxygenases (1.15% of gene models indicates that M. perniciosa has a great potential for detoxification, production of toxins and hormones; which may confer a high adaptive ability to the fungus. We have also discovered new genes encoding putative secreted polypeptides rich in cysteine, as well as genes related to methylotrophy and plant hormone biosynthesis (gibberellin and auxin. Analysis of gene families indicated that M. perniciosa have similar amounts of carboxylesterases and repertoires of plant cell wall degrading enzymes as other hemibiotrophic fungi. In addition, an approach for normalization of gene family data using incomplete genome data was developed and applied in M. perniciosa genome survey. Conclusion This genome survey gives an overview of the M. perniciosa genome, and reveals that a significant portion is involved in stress adaptation and plant necrosis, two necessary characteristics for a hemibiotrophic fungus to fulfill its infection cycle. Our analysis provides new evidence revealing potential adaptive traits that may play major roles in the mechanisms of pathogenicity in the M. perniciosa

  20. Design of the driving system for visible near-infrared spatial programmable push-broom remote CCD sensor

    Science.gov (United States)

    Xu, Zhipeng; Wei, Jun; Zhou, Qianting; Weng, Dongshan; Li, Jianwei

    2010-11-01

    VNIR multi-spectral image sensor has wide applications in remote sensing and imaging spectroscopy. An image spectrometer of a spatial remote programmable push-broom sensing satellite requires visible near infrared band ranges from 0.4μm to 1.04μm which is one of the most important bands in remote sensing. This paper introduces a method of design the driving system for 1024x1024 VNIR CCD sensor for programmable push-broom remote sensing. The digital driving signal is generated by the FPGA device. There are seven modules in the FPGA program and all the modules are coded by VHDL. The driving system have five mainly functions: drive the sensor as the demand of timing schedule, control the AD convert device to work, get the parameter via RS232 from control platform, process the data input from the AD device, output the processed data to PCI sample card to display in computer end. All the modules above succeed working on FPGA device APA600. This paper also introduced several important keys when designing the driving system including module synchronization, critical path optimization.

  1. Screening the phytoremediation potential of desert broom (Baccharis sarothroides Gray) growing on mine tailings in Arizona, USA

    Science.gov (United States)

    Haque, Nazmul; Peralta-Videa, Jose R.; Jones, Gary L.; Gill, Thomas E.; Gardea-Torresdey, Jorge L.

    2008-01-01

    The metal concentrations in a copper mine tailings and Desert broom (Baccharis sarothroides Gray) plants were investigated. The metal concentrations in plants, soil cover, and tailings were determined using ICP-OES. The concentration of copper, lead, molybdenum, chromium, zinc, arsenic, nickel, and cobalt in tailings was 526.4, 207.4, 89.1, 84.5, 51.7, 49.6, 39.7, and 35.6 mg kg−1, respectively. The concentration of all elements in soil cover was 10~15% higher than that of the tailings, except for molybdenum. The concentration of copper, lead, molybdenum, chromium, zinc, arsenic, nickel, and cobalt in roots was 818.3, 151.9, 73.9, 57.1, 40.1, 44.6, 96.8, and 26.7 mg kg−1 and 1214.1, 107.3, 105.8, 105.5, 55.2, 36.9, 30.9, and 10.9 mg kg−1 for shoots, respectively. Considering the translocation factor, enrichment coefficient, and the accumulation factor, desert broom could be a potential hyperaccumulator of Cu, Pb, Cr, Zn, As, and Ni. PMID:17964035

  2. Evaluation of physiological and defense characteristics and ions contents of Red and Brooms cultivars of sorghum (Sorghum biolor under salt stress stress in vitro

    Directory of Open Access Journals (Sweden)

    Roya Razavizadeh

    2016-12-01

    Full Text Available The present study was conducted to evaluate defense and physiological responses of some red and broomscultivars of Sorghum to salinity stress under in vitro culture. Seeds of Sorghum cultivars were cultured on MS (Murashig and Skoog, 1962 medium containing 0, 50, 100 and 150 mM NaCl under in vitro condition. After 2 weeks, the effect of salinity was studied on percentage of germination, growth parameters, photosynthetic capacity (total chlorophyll and carotenoids, total anthocyanin, total felavonoids, reducing sugars, proline, Na+/K+/Ca2+ ions, total soluble protein content, ascorbate peroxidase and catalase activities in roots and shoots. According to percentage of seed germination and growth parameters, Red and brooms cultivars were selected as susceptible and resistant to salinity in the study, respectively. The photosynthetic pigments (chlorophyll and carotenoids and the anthocyanin content decreased by increasing salt levels in both cultivars, while flavonoids increased in three wavelengths 270, 300 and 330 nm. The results showed proline, suger and protein contents increased in roots and shoots of two cultivars by increasing salinity. The content of Na+ ion increased in the roots of red and brooms cultivars and shoot of Red cultivar. Ratio Na/K increased in roots of two cultivars and shoots of red by increasing salinity. Ratio Na/K in the shoots of brooms cultivar didn’t change significantly under salt stress. Generally in the presence of salt, potassium decreased in roots and shoots of two cultivars. Calcium ion amount in the roots of two cultivars didn’t change significantly under salt stress while it increased in shoots of two cultivars. The CAT activity increased in roots and shoots of two cultivars but APX activity increased in brooms cultivar and decreased significantly in red cultivar.

  3. Phenolic compounds, methylxanthines and antioxidant activity in cocoa mass and chocolates produced from "witch broom disease" resistant and non resistant cocoa cultivars

    OpenAIRE

    Leite,Paula Bacelar; Maciel,Leonardo Fonseca; Opretzka,Luiza Carolina França; Soares,Sergio Eduardo; Bispo,Eliete da Silva

    2013-01-01

    The "witch broom disease" caused by the fungus called Moniliophthora perniciosa is one of the most important cocoa diseases in Latin America, causing around 70% production reduction in the southern Bahia. In attempt to solve the problem, many cultivars resistant to the disease have been recommended to farmers. On the other hand, the chocolate flavour is composed by many compounds whose formation depends on the genetic background, environment where cocoa is grown and processing operations. The...

  4. Use of Vegetable Fibers for PRB to Remove Heavy Metals from Contaminated Aquifers-Comparisons among Cabuya Fibers, Broom Fibers and ZVI.

    Science.gov (United States)

    Mayacela Rojas, Celia Margarita; Rivera Velásquez, María Fernanda; Tavolaro, Adalgisa; Molinari, Antonio; Fallico, Carmine

    2017-06-24

    The Zero Valent Iron (ZVI) is the material most commonly used for permeable reactive barriers (PRB). For technical and economic reasons, hoter reactive substances usable in alternative to ZVI are investigated. The present study takes into account a vegetable fibers, the cabuya, investigating its capacity to retain heavy metals. The capacity of the cabuya fibers to adsorb heavy metals was verified in laboratory, by batch and column tests. The batch tests were carried out with cabuya and ZVI, using copper (Cu), zinc (Zn), cadmium (Cd) and lead (Pb). The results obtained by the cabuya fibers showed a very high adsorption capacity of heavy metals and resulted very similar to those obtained for the broom fibers in a previous study. The high value of the absorption capacity of the cabuya fibers was also confirmed by the analogous comparison made with the results of the batch tests carried out with ZVI. Column tests, using copper, zinc and cadmium, allowed to determine for the cabuya fibers the maximum removal percentage of the heavy metals considered, the corresponding times and the time ranges of the release phase. For each metal considered, for a given length and three different times, the constant of degradation of cabuya fibers was determined, obtaining values very close to those reported for broom fibers. The scalar behavior of heavy metal removal percentage was verified. An electron microscope analysis allowed to compare, by SEM images, the characteristics of the cabuya and broom fibers. Finally, to investigate the chemical structure of cabuya and broom fibers, the FTIR technique was used, obtaining their respective infrared spectra.

  5. Push-Broom-Type Very High-Resolution Satellite Sensor Data Correction Using Combined Wavelet-Fourier and Multiscale Non-Local Means Filtering

    Science.gov (United States)

    Kang, Wonseok; Yu, Soohwan; Seo, Doochun; Jeong, Jaeheon; Paik, Joonki

    2015-01-01

    In very high-resolution (VHR) push-broom-type satellite sensor data, both destriping and denoising methods have become chronic problems and attracted major research advances in the remote sensing fields. Since the estimation of the original image from a noisy input is an ill-posed problem, a simple noise removal algorithm cannot preserve the radiometric integrity of satellite data. To solve these problems, we present a novel method to correct VHR data acquired by a push-broom-type sensor by combining wavelet-Fourier and multiscale non-local means (NLM) filters. After the wavelet-Fourier filter separates the stripe noise from the mixed noise in the wavelet low- and selected high-frequency sub-bands, random noise is removed using the multiscale NLM filter in both low- and high-frequency sub-bands without loss of image detail. The performance of the proposed method is compared to various existing methods on a set of push-broom-type sensor data acquired by Korean Multi-Purpose Satellite 3 (KOMPSAT-3) with severe stripe and random noise, and the results of the proposed method show significantly improved enhancement results over existing state-of-the-art methods in terms of both qualitative and quantitative assessments. PMID:26378532

  6. Proteomic analysis during of spore germination of Moniliophthora perniciosa, the causal agent of witches' broom disease in cacao.

    Science.gov (United States)

    Mares, Joise Hander; Gramacho, Karina Peres; Santos, Everton Cruz; da Silva Santiago, André; Santana, Juliano Oliveira; de Sousa, Aurizângela Oliveira; Alvim, Fátima Cerqueira; Pirovani, Carlos Priminho

    2017-08-17

    Moniliophthora perniciosa is a phytopathogenic fungus responsible for witches' broom disease of cacao trees (Theobroma cacao L.). Understanding the molecular events during germination of the pathogen may enable the development of strategies for disease control in these economically important plants. In this study, we determined a comparative proteomic profile of M. perniciosa basidiospores during germination by two-dimensional SDS-PAGE and mass spectrometry. A total of 316 proteins were identified. Molecular changes during the development of the germinative tube were identified by a hierarchical clustering analysis based on the differential accumulation of proteins. Proteins associated with fungal filamentation, such as septin and kinesin, were detected only 4 h after germination (hag). A transcription factor related to biosynthesis of the secondary metabolite fumagillin, which can form hybrids with polyketides, was induced 2 hag, and polyketide synthase was observed 4 hag. The accumulation of ATP synthase, binding immunoglobulin protein (BiP), and catalase was validated by western blotting. In this study, we showed variations in protein expression during the early germination stages of fungus M. perniciosa. Proteins associated with fungal filamentation, and consequently with virulence, were detected in basidiospores 4 hag., for example, septin and kinesin. We discuss these results and propose a model of the germination of fungus M. perniciosa. This research can help elucidate the mechanisms underlying basic processes of host invasion and to develop strategies for control of the disease.

  7. Geohydrology of the valley-fill aquifer in the Endicott-Johnson City area, Broome County, New York

    Science.gov (United States)

    Holecek, Thomas J.; Randall, A.D.; Belli, J.L.; Allen, R.V.

    1982-01-01

    This report is the tenth in a series of 11 map sets depicting geohydrologic conditions in selected aquifers in upstate New York. Geohydrologic data are compiled on five maps at 1:24,000 scale. Together, the maps provide a comprehensive overview of a major valley-fill aquifer in southwestern Broome County. The maps include surficial geology, geologic sections, aquifer thickness, water-infiltration potential of soil zone, potentiometric-surface altitude, and land use. The valley-fill deposits consist of alluvial silt and sand, glacial outwash (sand and gravel), ice-contact sand and gravel, till, and lacustrine silt and clay. The sand and gravel beds have relatively high permeabilities whereas the till, silt, and clay deposits have relatively low permeabilities. Water-table conditions are found in unconfined sand and gravel, whereas artesian conditions prevail within sand and gravel confined by silty deposits. Recharge occurs over the entire surface of the aquifer, due to permeable land-surface conditions, but is greatest along the margin of the valley, where runoff from the hillsides is concentrated, and near streams. The use of land overlying the aquifer is predominantly commercial and residential with lesser amounts of agricultural and industrial uses. (USGS)

  8. Population genetic analysis reveals a low level of genetic diversity of 'Candidatus Phytoplasma aurantifolia' causing witches' broom disease in lime.

    Science.gov (United States)

    Al-Abadi, Shaikha Y; Al-Sadi, Abdullah M; Dickinson, Matthew; Al-Hammadi, Mohammed S; Al-Shariqi, Rashid; Al-Yahyai, Rashid A; Kazerooni, Elham A; Bertaccini, Assunta

    2016-01-01

    Witches' broom disease of lime (WBDL) is a serious phytoplasma disease of acid lime in Oman, the UAE and Iran. Despite efforts to study it, no systemic study attempted to characterize the relationship among the associated phytoplasma, ' Candidatus Phytoplasma aurantifolia', from the three countries. This study utilized sequences of the 16S rRNA, imp and secA genes to characterize 57 strains collected from Oman (38), the UAE (9) and Iran (10). Phylogenetic analysis based on the 16S rRNA gene showed that the 57 strains shared 98.5-100 % nucleotide similarity to each other and to strains of ' Ca . P. aurantifolia' available in GenBank. The level of genetic diversity was low based on the 16S rRNA (0-0.011), imp (0-0.002) and secA genes (0-0.015). The presence of low level of diversity among phytoplasma strains from Oman, the UAE and Iran can be explained by the movement of infected lime seedlings from one country to another through trading and exchange of infected plants. The study discusses implication of the findings on WBDL spread and management.

  9. Morphological changes of Paulownia seedlings infected phytoplasmas reveal the genes associated with witches' broom through AFLP and MSAP.

    Directory of Open Access Journals (Sweden)

    Xibing Cao

    Full Text Available Paulownia witches' broom (PaWB caused by phytoplasma might result in devastating damage to the growth and wood production of Paulownia. To study the effect of phytoplasma on DNA sequence and to discover the genes related to PaWB occurrence, DNA polymorphisms and DNA methylation levels and patterns in PaWB seedlings, the ones treated with various concentration of methyl methane sulfonate (MMS and healthy seedlings were investigated with amplified fragment length polymorphism (AFLP and methylation-sensitive amplification polymorphism (MSAP. Our results indicated that PaWB seedlings recovered a normal morphology, similar to healthy seedlings, after treatment with more than 20 mg · L-1 MMS; Phytoplasma infection did not change the Paulownia genomic DNA sequence at AFLP level, but changed the global DNA methylation levels and patterns; Genes related to PaWB were discovered through MSAP and validated using quantitative real-time PCR (qRT-PCR. These results implied that changes of DNA methylation levels and patterns were closely related to the morphological changes of seedlings infected with phytoplasmas.

  10. A novel scene-based non-uniformity correction method for SWIR push-broom hyperspectral sensors

    Science.gov (United States)

    Hu, Bin-Lin; Hao, Shi-Jing; Sun, De-Xin; Liu, Yin-Nian

    2017-09-01

    A novel scene-based non-uniformity correction (NUC) method for short-wavelength infrared (SWIR) push-broom hyperspectral sensors is proposed and evaluated. This method relies on the assumption that for each band there will be ground objects with similar reflectance to form uniform regions when a sufficient number of scanning lines are acquired. The uniform regions are extracted automatically through a sorting algorithm, and are used to compute the corresponding NUC coefficients. SWIR hyperspectral data from airborne experiment are used to verify and evaluate the proposed method, and results show that stripes in the scenes have been well corrected without any significant information loss, and the non-uniformity is less than 0.5%. In addition, the proposed method is compared to two other regular methods, and they are evaluated based on their adaptability to the various scenes, non-uniformity, roughness and spectral fidelity. It turns out that the proposed method shows strong adaptability, high accuracy and efficiency.

  11. Functional and biophysical studies on four ceratoplatanins from the fungus Moniliophthora perniciosa, causal agent of the Witche's broom disease

    International Nuclear Information System (INIS)

    Barsottini, M.; Zaparoli, G.; Garcia, O.; Pereira, G.A.G.; Oliveira, J.F.; Tiezzi, H.O.; Ambrosio, A.L.B.; Dias, S.M.G.

    2012-01-01

    Full text: Ceratoplatanin (CP) is a secreted protein of 12.4 kDa initially identified in culture filtrates of the disease ascomycete Ceratocystis fimbriata f. sp. platani, etiological agent of the canker stain disease. CP is also the founding member of the namesake protein family, which contains fungal-secreted proteins involved in various stages of the host-fungus interaction and may act as phytotoxins or elicitors of defense response. Besides the low molecular weight, CPs have a high percentage of hydrophobic residues and share two conserved intramolecular disulfide bonds. It has been suggested that CPs have important physiological functions, including interaction with cell wall or cell membrane and manipulation of the host's defense system. Furthermore, a recent work showed that the ceratoplatanin from C. fimbriata has some degree of affinity for the saccharide 4-N-acetylglucosamine. However, its precise molecular function remains elusive. Five putative CPs have been identified in Moniliophthora perniciosa a basidiomycete fungus responsible for great economic losses in cocoa industry in the form of Witches' broom disease (WBD) , four of which had their crystal structures resolved by our group. In this work we report biophysical and functional studies on these MpCPs aiming at understanding their role and importance during the WBD progression. (author)

  12. Mixel camera--a new push-broom camera concept for high spatial resolution keystone-free hyperspectral imaging.

    Science.gov (United States)

    Høye, Gudrun; Fridman, Andrei

    2013-05-06

    Current high-resolution push-broom hyperspectral cameras introduce keystone errors to the captured data. Efforts to correct these errors in hardware severely limit the optical design, in particular with respect to light throughput and spatial resolution, while at the same time the residual keystone often remains large. The mixel camera solves this problem by combining a hardware component--an array of light mixing chambers--with a mathematical method that restores the hyperspectral data to its keystone-free form, based on the data that was recorded onto the sensor with large keystone. A Virtual Camera software, that was developed specifically for this purpose, was used to compare the performance of the mixel camera to traditional cameras that correct keystone in hardware. The mixel camera can collect at least four times more light than most current high-resolution hyperspectral cameras, and simulations have shown that the mixel camera will be photon-noise limited--even in bright light--with a significantly improved signal-to-noise ratio compared to traditional cameras. A prototype has been built and is being tested.

  13. Health assessment for Colesville Municipal Landfill Colesville, Broome County, New York, Region 2. CERCLIS No. NYD980768691

    International Nuclear Information System (INIS)

    1993-01-01

    The Colesville Landfill is an inactive municipal landfill which received about 68,500 gallons of drummed industrial wastes between 1973 and 1975. The 113-acre site is located in a rural region of Broome County, New York, approximately one mile north of the Hamlet of Doraville, within the Town of Colesville. In 1983, volatile organic compounds (VOCs) were found in drinking water supplies of homes near the landfill property. Subsequent site investigations led to the closure of the landfill in December 1984. The Colesville Landfill was accepted to the National Priorities List in June 1986. A Remedial Investigation of the landfill area was completed in 1988 and identified ground water as the primary mechanism for off-site migration of contaminants. Existing and potential human exposure routes include: ingestion, inhalation and dermal absorption of VOCs in potable water; direct contact with soil, surface water and stream sediments; direct contact and inhalation of contaminants in surficial leachate seeps and ingestion of wild animals (e.g., deer and turkey) which may have been exposed to site contaminants. Based on the information reviewed, the Colesville Landfill is a public health hazard because of the risk to human health from past exposures and possible future exposures to hazardous substances at concentrations that may result in adverse health impacts

  14. Molecular Characterization of the 16S rRNA Gene of Phytoplasmas Detected in Two Leafhopper Species Associated with Alfalfa Plants Infected with Witches' Broom in Oman

    Directory of Open Access Journals (Sweden)

    A.J. Khan

    2003-12-01

    Full Text Available Two leafhopper species, Austroagallia avicula and Empoasca sp., were consistently found in alfalfa fields infected with witches’ broom phytoplasma (OmanAlfWB in the Al-Batinah, Dakhliya, North and South Sharqiya, Muscat, and Al-Bureimi regions of the Sultanate of Oman. Phytoplasmas from both leafhoppers were detected by specific polymerase chain reaction (PCR amplification of the 16S rRNA gene and the spacer region in direct PCR using P1/P7 primer pairs. Comparative RFLP profiles of the amplified rRNA gene and the spacer region from leafhopper phytoplasmas and from 20 phytoplasma controls yielded patterns referable to phytoplasmas belonging to the peanut witches’ broom group (16SrII group. In particular, extensive RFLP analyses with the endonucleases HpaII, Tru9I, Tsp509I, and RsaI indicated that the phytoplasmas in A. avicula and Empoasca sp. were identical but showed some differences from OmanAlfWB; however, RFLP patterns obtained with TaqI showed the OmanAlfWB and the phytoplasmas from the two leafhoppers to be identical. Direct PCR products amplified from phytoplasma leafhopper DNA using the P1/P7 primer pair were cloned and sequenced yielding 1758 bp and 1755 bp products from A. avicula and Empoasca sp. respectively; the homology of these sequences with OmanAlfWB and papaya yellow crinkle phytoplasmas was more than 98%. A phylogenetic tree based on the 16S rRNA gene and spacer region sequences from 44 phytoplasmas revealed that the phytoplasmas from the leafhoppers clustered with OmanAlfWB, papaya yellow crinkle, and gerbera phyllody phytoplasmas, all belonging to 16SrII group, but were distinct from lime witches’ broom phytoplasma, the most commonly found phytoplasma in the Sultanate of Oman.

  15. Cultivation of Aschersonia placenta Berkeley and Broom and its efficacy for controlling Parlatoria ziziphi (Lucas (Hemiptera: Diaspididae

    Directory of Open Access Journals (Sweden)

    Dokgluaymai Homrahud

    2016-05-01

    Full Text Available The entomopathogenic fungus genus Aschersonia (Deuteromycotina: Hyphomycetes is host specific to some aleyrodids and scale insects. In search of the Thai endemic species, fungus samples were isolated from cadavers of citrus whiteflies (Aleyrodes tabaci Gennadius found in citrus orchards in Trat province, Thailand. After morphological analysis and scanning electron microscopic examination, it was identified as Aschersonia placenta Berkeley and Broom. Seven synthetic media, namely: potato dextrose agar (PDA, PDA with pasteurized milk (Foremost® (PDA + M, Sabouraud dextrose agar with yeast extract (SDAY, SDA with pasteurized milk (Foremost® (SDA + M, corn meal agar (CMA, water agar with juice of eight vegetable species (V8® (WA + V8 and WA were explored as appropriate media for fungal cultivation. SDAY and SDA + M gave the best colony radial growth, producing 2.04 ± 0.13 cm and 2.09 ± 0.10 cm in 21 d, respectively. However, based on the ability of A. placenta to produce conidia, PDA and SDAY which produced 2.59 × 108 conidia/mL and 2.69 × 108 conidia/mL, respectively, were considered as the most suitable media for this fungal species. The efficiency assessment of A. placenta for controlling black parlatoria (Parlatoria ziziphi (Lucas, indicated that a conidial suspension at 1 × 109 conidia/mL gave 23.73% and 27.42% mortality at 14 and 21 d post inoculation, respectively.

  16. Characterization of a protease produced by a Trichoderma harzianum isolate which controls cocoa plant witches' broom disease

    Directory of Open Access Journals (Sweden)

    Felix Carlos

    2002-01-01

    Full Text Available Abstract Background Several Trichoderma strains have been reported to be effective in controlling plant diseases, and the action of fungal hydrolytic enzymes has been considered as the main mechanism involved in the antagonistic process. However, although Trichoderma strains were found to impair development of Crinipellis perniciosa, the causal agent of cocoa plant witches' broom disease, no fungal strain is available for effective control of this disease. We have then undertaken a program of construction of hydrolytic enzyme-overproducing Trichoderma strains aiming improvement of the fungal antagonistic capacity. The protease of an indian Trichoderma isolate showing antagonistic activity against C. perniciosa was purified to homogeneity and characterized for its kinetic properties and action on the phytopathogen cell wall. Results A protease produced by the Trichoderma harzianum isolate 1051 was purified to homogeneity by precipitation with ammonium sulfate followed by hydrophobic chromatography. The molecular mass of this protease as determined by SDS-polyacrylamide gel electrophoresis was about 18.8 kDa. Its N-terminal amino acid sequence shares no homology with any other protease. The purified enzyme substantially affected the cell wall of the phytopathogen C. perniciosa. Western-blotting analysis showed that the enzyme was present in the culture supernatant 24 h after the Trichoderma started to grow in casein-containing liquid medium. Conclusions The capacity of the Trichoderma harzianum protease to hydrolyze the cell wall of C. perniciosa indicates that this enzyme may be actually involved in the antagonistic process between the two fungi. This fact strongly suggest that hydrolytic enzyme over-producing transgenic fungi may show superior biocontrol capacity.

  17. A new broom?

    African Journals Online (AJOL)

    Association, a position which it has attained largely through the hard work and enthu siasm of Prof. Dankwart Wittenberg, the Journal's ... two important roles to play: firstly, to provide a repository for sound clinical research, which might not ...

  18. Production of hydrolytic enzymes by Trichoderma isolates with antagonistic activity against Crinipellis perniciosa, the causal agent of witches' broom of cocoa

    Directory of Open Access Journals (Sweden)

    Marco Janice Lisboa De

    2003-01-01

    Full Text Available Two isolates of Trichoderma, which reduce the incidence of witches'broom disease caused in cocoa by Crinipellis perniciosa, were evaluated for their potential to produce hydrolases in liquid medium. Very low or no hydrolytic activity was produced in the absence of any substrate. The activities of chitinase, N-acetylglucosaminidase, beta-1,3-glucanase, total cellulase, endoglucanase, aryl- beta-glucosidase, beta-glucosidase, protease and amylase increased dramatically within 72-120 h of growth in the presence of specific substrates. Except for N-acetylglucosaminidase and beta-glucosidase Trichoderma harzianum isolate 1051 produced the largest amounts of hydrolases. The possible involvement of these enzymes in the antagonistic interaction between Trichoderma and C. perniciosa is discussed.

  19. Parent selection for cocoa resistance to witches'-broom Seleção de progenitores de cacaueiro quanto à resistência à vassoura-de-bruxa

    Directory of Open Access Journals (Sweden)

    Stela Dalva Vieira Midlej Silva

    2010-07-01

    Full Text Available The objective of this work was to identify genotypes with high general combining ability for resistance to witches'-broom (Moniliophthora perniciosa in populations formed from a first cycle of recurrent selection. Highly productive and resistant clones from different origins were interbred using the North Carolina II design. The clones SCA 6, CSUL 7, RB 39, CEPEC 89, OC 67, BE 4, EEG 29 and ICS 98 were used as paternal parents, while the maternal ones were NA 33, CCN 10, IMC 67, P 4B, CCN 51, CEPEC 86, SGU 54 and ICS 9. Twenty days after germination, 56 seedlings of each cross (four replicates of 14 seedlings received the inoculation of a 1-mL suspension with 7.5x10(4 basidiospores mL-1. Symptoms were evaluated 60 days after inoculation. Significant differences were observed among paternal and among maternal parents, for resistance to witches'-broom assessed according to the proportion of progeny seedlings with the disease symptoms. Differences were also observed between groups of mothers or fathers previously defined as resistant, and groups previously defined as susceptible. It is possible to obtain a combination of genes that can increase the level of resistance to witches'-broom directly from the first cycle of recurrent selection.O objetivo deste trabalho foi identificar genótipos com alta capacidade geral de combinação quanto à resistência à vassoura-de-bruxa (Moniliophthora perniciosa, em populações formadas a partir do primeiro ciclo de seleção recorrente. Clones altamente produtivos e resistentes à vassoura-de-bruxa, de diferentes procedências, foram intercruzados com uso do delineamento Carolina do Norte II. Como progenitores paternos, foram utilizados os clones SCA 6, CSUL 7, RB 39, CEPEC 89, OC 67, BE 4, EEG 29 e ICS 98 e, como maternos, NA 33, CCN 10, IMC 67, P 4B, CCN 51, CEPEC 86, SGU 54 e ICS 9. Vinte dias após a germinação, 56 plântulas de cada cruzamento (quatro repetições de 14 plântulas receberam inocula

  20. Functional and biophysical studies on four ceratoplatanins from the fungus Moniliophthora perniciosa, causal agent of the Witche's broom disease

    Energy Technology Data Exchange (ETDEWEB)

    Barsottini, M.; Zaparoli, G.; Garcia, O.; Pereira, G.A.G. [Universidade Estadual de Campinas (UNICAMP), SP (Brazil); Oliveira, J.F.; Tiezzi, H.O.; Ambrosio, A.L.B.; Dias, S.M.G. [Laboratorio Nacional de Biociencias - LNBIO, Campinas, SP (Brazil)

    2012-07-01

    Full text: Ceratoplatanin (CP) is a secreted protein of 12.4 kDa initially identified in culture filtrates of the disease ascomycete Ceratocystis fimbriata f. sp. platani, etiological agent of the canker stain disease. CP is also the founding member of the namesake protein family, which contains fungal-secreted proteins involved in various stages of the host-fungus interaction and may act as phytotoxins or elicitors of defense response. Besides the low molecular weight, CPs have a high percentage of hydrophobic residues and share two conserved intramolecular disulfide bonds. It has been suggested that CPs have important physiological functions, including interaction with cell wall or cell membrane and manipulation of the host's defense system. Furthermore, a recent work showed that the ceratoplatanin from C. fimbriata has some degree of affinity for the saccharide 4-N-acetylglucosamine. However, its precise molecular function remains elusive. Five putative CPs have been identified in Moniliophthora perniciosa a basidiomycete fungus responsible for great economic losses in cocoa industry in the form of Witches' broom disease (WBD) , four of which had their crystal structures resolved by our group. In this work we report biophysical and functional studies on these MpCPs aiming at understanding their role and importance during the WBD progression. (author)

  1. The causal agents of witches' broom and frosty pod rot of cacao (chocolate, Theobroma cacao) form a new lineage of Marasmiaceae.

    Science.gov (United States)

    Aime, M C; Phillips-Mora, W

    2005-01-01

    The two most devastating diseases of cacao (Theobroma cacao)--the source of chocolate--in tropical America are caused by the fungi Crinipellis perniciosa (witches' broom disease) and Moniliophthora roreri (frosty pod rot or moniliasis disease). Despite the agricultural, socio-economic and environmental impact of these fungi, most aspects of their life cycles are unknown, and the phylogenetic relationships of M. roreri have yet to be conclusively established. In this paper, extensive phylogenetic analyses of five nuclear gene regions (28S rDNA, 18S rDNA, ITS, RPB1, and EF1-alpha) confirm that C. perniciosa and M. roreri are sister taxa that belong in the Marasmiaceae (euagarics). Furthermore, these taxa form part of a separate and distinct lineage within the family. This lineage includes the biotrophic fungi Moniliophthora perniciosa comb. nov. and M. roreri, as well as one undescribed endophytic species. The sister genera to Moniliophthora are Marasmius, Crinipellis and Chaetocalathus, which consist mainly of saprotrophic litter fungi.

  2. Crystal Structure of MpPR-1i, a SCP/TAPS protein from Moniliophthora perniciosa, the fungus that causes Witches’ Broom Disease of Cacao

    Energy Technology Data Exchange (ETDEWEB)

    Baroni, Renata M.; Luo, Zhipu; Darwiche, Rabih; Hudspeth, Elissa M.; Schneiter, Roger; Pereira, Gonçalo A.G.; Mondego, Jorge M.C.; Asojo, Oluwatoyin A. (Fribourg); (Baylor); (NCI); (IAC-- Brazil); (UNICAMP)

    2017-08-10

    The pathogenic fungi Moniliophthora perniciosa causes Witches’ Broom Disease (WBD) of cacao. The structure of MpPR-1i, a protein expressed by M. perniciosa when it infects cacao, are presented. This is the first reported de novo structure determined by single-wavelength anomalous dispersion phasing upon soaking with selenourea. Each monomer has flexible loop regions linking the core alpha-beta-alpha sandwich topology that comprise ~50% of the structure, making it difficult to generate an accurate homology model of the protein. MpPR-1i is monomeric in solution but is packed as a high ~70% solvent content, crystallographic heptamer. The greatest conformational flexibility between monomers is found in loops exposed to the solvent channel that connect the two longest strands. MpPR-1i lacks the conserved CAP tetrad and is incapable of binding divalent cations. MpPR-1i has the ability to bind lipids, which may have roles in its infection of cacao. These lipids likely bind in the palmitate binding cavity as observed in tablysin-15, since MpPR-1i binds palmitate with comparable affinity as tablysin-15. Further studies are required to clarify the possible roles and underlying mechanisms of neutral lipid binding, as well as their effects on the pathogenesis of M. perniciosa so as to develop new interventions for WBD.

  3. Identification of candidate genes involved in Witches' broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil.

    Science.gov (United States)

    Royaert, Stefan; Jansen, Johannes; da Silva, Daniela Viana; de Jesus Branco, Samuel Martins; Livingstone, Donald S; Mustiga, Guiliana; Marelli, Jean-Philippe; Araújo, Ioná Santos; Corrêa, Ronan Xavier; Motamayor, Juan Carlos

    2016-02-11

    Witches' broom disease (WBD) caused by the fungus Moniliophthora perniciosa is responsible for considerable economic losses for cacao producers. One of the ways to combat WBD is to plant resistant cultivars. Resistance may be governed by a few genetic factors, mainly found in wild germplasm. We developed a dense genetic linkage map with a length of 852.8 cM that contains 3,526 SNPs and is based on the MP01 mapping population, which counts 459 trees from a cross between the resistant 'TSH 1188' and the tolerant 'CCN 51' at the Mars Center for Cocoa Science in Barro Preto, Bahia, Brazil. Seven quantitative trait loci (QTL) that are associated with WBD were identified on five different chromosomes using a multi-trait QTL analysis for outbreeders. Phasing of the haplotypes at the major QTL region on chromosome IX on a diversity panel of genotypes clearly indicates that the major resistance locus comes from a well-known source of WBD resistance, the clone 'SCAVINA 6'. Various potential candidate genes identified within all QTL may be involved in different steps leading to disease resistance. Preliminary expression data indicate that at least three of these candidate genes may play a role during the first 12 h after infection, with clear differences between 'CCN 51' and 'TSH 1188'. We combined the information from a large mapping population with very distinct parents that segregate for WBD, a dense set of mapped markers, rigorous phenotyping capabilities and the availability of a sequenced genome to identify several genomic regions that are involved in WBD resistance. We also identified a novel source of resistance that most likely comes from the 'CCN 51' parent. Thanks to the large population size of the MP01 population, we were able to pick up QTL and markers with relatively small effects that can contribute to the creation and selection of more tolerant/resistant plant material.

  4. Quantitative proteome-level analysis of paulownia witches’ broom disease with methyl methane sulfonate assistance reveals diverse metabolic changes during the infection and recovery processes

    Directory of Open Access Journals (Sweden)

    Zhe Wang

    2017-07-01

    Full Text Available Paulownia witches’ broom (PaWB disease caused by phytoplasma is a fatal disease that leads to considerable economic losses. Although there are a few reports describing studies of PaWB pathogenesis, the molecular mechanisms underlying phytoplasma pathogenicity in Paulownia trees remain uncharacterized. In this study, after building a transcriptome database containing 67,177 sequences, we used isobaric tags for relative and absolute quantification (iTRAQ to quantify and analyze the proteome-level changes among healthy P. fortunei (PF, PaWB-infected P. fortunei (PFI, and PaWB-infected P. fortunei treated with 20 mg L−1 or 60 mg L−1 methyl methane sulfonate (MMS (PFI-20 and PFI-60, respectively. A total of 2,358 proteins were identified. We investigated the proteins profiles in PF vs. PFI (infected process and PFI-20 vs. PFI-60 (recovered process, and further found that many of the MMS-response proteins mapped to “photosynthesis” and “ribosome” pathways. Based on our comparison scheme, 36 PaWB-related proteins were revealed. Among them, 32 proteins were classified into three functional groups: (1 carbohydrate and energy metabolism, (2 protein synthesis and degradation, and (3 stress resistance. We then investigated the PaWB-related proteins involved in the infected and recovered processes, and discovered that carbohydrate and energy metabolism was inhibited, and protein synthesis and degradation decreased, as the plant responded to PaWB. Our observations may be useful for characterizing the proteome-level changes that occur at different stages of PaWB disease. The data generated in this study may serve as a valuable resource for elucidating the pathogenesis of PaWB disease during phytoplasma infection and recovery stages.

  5. Carqueja (Baccharis trimera: utilização terapêutica e biossíntese Broom (Baccharis trimera: therapeutic use and biosynthesis

    Directory of Open Access Journals (Sweden)

    T.K. Karam

    2013-01-01

    Full Text Available A utilização de plantas medicinais no tratamento e cura de enfermidades é um recurso terapêutico muito antigo e talvez o único adotado em muitas comunidades e grupos étnicos. A família Asteraceae concentra grande número de espécies com potencial terapêutico, algumas das quais do gênero Baccharis, utilizadas na medicina popular e também na produção de fitoterápicos. Estudos relatam que a principal indicação terapêutica mencionada para estas espécies estão relacionadas com ações sobre o trato gastrintestinal. A partir de pesquisa bibliográfica, foram identificadas as características morfológicas da carqueja, bem como, as propriedades terapêuticas cientificamente comprovadas, biossíntese dos principais metabólitos secundários, e possíveis interações medicamentosas.The use of medicinal plants to treat and cure diseases is a very old therapeutic resource and perhaps the only one adopted in many communities and ethnic groups. The Asteraceae family concentrates a great number of species with therapeutic potential, some of which belong to the Baccharis genus and have been used in folk medicine and herbal medicine production. Studies have reported that the main therapeutic indication for these species is related to actions on the gastrointestinal tract. From literature searches, the morphological characteristics of broom, its scientifically proven therapeutic properties, as well as biosynthesis of secondary metabolites and possible drug interactions were identified.

  6. A multidisciplinary approach to digital mapping of dinosaurian tracksites in the Lower Cretaceous (Valanginian–Barremian Broome Sandstone of the Dampier Peninsula, Western Australia

    Directory of Open Access Journals (Sweden)

    Anthony Romilio

    2017-03-01

    Full Text Available The abundant dinosaurian tracksites of the Lower Cretaceous (Valanginian–Barremian Broome Sandstone of the Dampier Peninsula, Western Australia, form an important part of the West Kimberley National Heritage Place. Previous attempts to document these tracksites using traditional mapping techniques (e.g., surface overlays, transects and gridlines combined with conventional photography have been hindered by the non-trivial challenges associated with working in this area, including, but not limited to: (1 the remoteness of many of the tracksites; (2 the occurrence of the majority of the tracksites in the intertidal zone; (3 the size and complexity of many of the tracksites, with some extending over several square kilometres. Using the historically significant and well-known dinosaurian tracksites at Minyirr (Gantheaume Point, we show how these issues can be overcome through the use of an integrated array of remote sensing tools. A combination of high-resolution aerial photography with both manned and unmanned aircraft, airborne and handheld high-resolution lidar imaging and handheld photography enabled the collection of large amounts of digital data from which 3D models of the tracksites at varying resolutions were constructed. The acquired data encompasses a very broad scale, from the sub-millimetre level that details individual tracks, to the multiple-kilometre level, which encompasses discontinuous tracksite exposures and large swathes of coastline. The former are useful for detailed ichnological work, while the latter are being employed to better understand the stratigraphic and temporal relationship between tracksites in a broader geological and palaeoecological context. These approaches and the data they can generate now provide a means through which digital conservation and temporal monitoring of the Dampier Peninsula’s dinosaurian tracksites can occur. As plans for the on-going management of the tracks in this area progress, analysis of

  7. Bioengineering applied to erosion and stability control in the North Apennines (Emilia-Romagna Region, Italy): a check about critical aspects of the works.

    Science.gov (United States)

    Selli, Lavinia; Cavazza, Claudio; Pavanelli, Donatella

    2013-04-01

    Because of its geological structure, in the Emilia-Romagna Region over 32,000 landslides have been identified. Several works have been made in order to control mass movement's dynamics and to secure of Reno and Lamone Mountain Basin Rivers, the road network and near by villages and towns. Most of the control works dealt with bioengineering practices: palisades piles, geotextiles, seedings, surface flow control works, dikes within main drainage ditches. In order to check about critical aspects related to the use of these techniques in the Apennines, a survey in this basins was designed with specific interest in the several kinds of works realised, in which plant species were mostly used and in the factors that affected the success or failure of the works. Territory encompasses steep slopes covered with woods to low reliefs covered with grasslands. It is characterized by prevailing clays, inducing instability, and arenaceous lithology with impermeable soils; drainage density is quite high and hillsides suffer extensive and severe erosion and slope stability problems. Chestnut woods mainly represent land use at higher altitudes, while coppice, pastures and crops are present on milder hillsides. The remaining part of the basin is covered by vineyards, orchards, ponds and urban areas, which are basically located in the valley floor. Precipitation events mainly consist of rainfall ranging between 950-1015 mm per year; few snowfalls occur during winter and a long dry season lasts from June until September. We have analyzed 187 works designed mainly for the consolidation of slope instabilities through a widespread enhancement of the vegetation cover. The surveyed works are classified as a function of their building features: it can be seen that cribwalls and palisades are by far the most common types, being the 24% and the 34% respectively of the works. As far as the most adopted plant species, they were silver willow (Salix alba), Spanish Broom (Spartium Junceum) and

  8. Marcadores microssatélites relacionados com a resistência à vassoura-de-bruxa do cacaueiro Microsatellite markers related to resistance of cocoa tree against witches'-broom

    Directory of Open Access Journals (Sweden)

    Rogério Mercês Ferreira Santos

    2007-08-01

    Full Text Available Os objetivos deste trabalho foram caracterizar a resistência à vassoura-de-bruxa de plantas de cacau originadas do cruzamento entre TSH 1188 e CCN 51 (população segregante, por meio de dois métodos de inoculação em condições de campo, e identificar marcadores microssatélites específicos para grupos de plantas resistentes e suscetíveis. As plantas-controle avaliadas pelos métodos de inoculação natural e inoculação artificial em campo produziram os mesmos padrões de sintomas. As plantas da população segregante também coincidiram os padrões de sintomas em 90%, por esses dois métodos. O método de inoculação artificial em campo permite detectar falso-resistentes. Dos 18 pares de primers microssatélites amplificados, 15 foram polimórficos entre os genitores, e seis entre os grupos de plantas segregantes contrastantes quanto à resistência à vassoura-de-bruxa. Foram confirmadas três marcas previamente associadas a QTL (locos para características quantitativas relacionados com a resistência à vassoura-de-bruxa, comuns a outras populações. Também foram identificados três novos QTL para esta característica, típicos desta população, o que comprova sua utilidade para o melhoramento genético do cacaueiro.The objectives of this work were to evaluate cocoa tree resistance against witches'-broom, in plants originated from the crossing between TSH 1188 and CCN 51 (segregating population, by means of two methods of inoculation in field conditions, and to identify microsatellite markers specific for resistant and susceptible plants. The control plants bore identical symptoms as the plants of the segregating population in 90% of the cases under the two methods. The method of artificial inoculation in the field allows the detection of false resistance to the disease. Of the 18 pairs of microsatellite primers amplified, 15 were polymorphic between genitors and six were polymorphic between the two groups of plants evaluated

  9. More Than Pushing a Broom

    Science.gov (United States)

    Ward, James E.

    1976-01-01

    A course in building maintenance (at the Voc Tech Department of Pensacola Junior College, Florida) teaches students to maintain, repair, and rework existing facilities under the CETA program. The daily schedule includes one hour of classroom work covering related academic subjects and five hours spent working on a variety of projects. (LH)

  10. Flash pyrolysis of forestry residues from the Portuguese Central Inland Region within the framework of the BioREFINA-Ter project.

    Science.gov (United States)

    Amutio, Maider; Lopez, Gartzen; Alvarez, Jon; Moreira, Rui; Duarte, Gustavo; Nunes, Joao; Olazar, Martin; Bilbao, Javier

    2013-02-01

    The feasibility of the valorization by flash pyrolysis of forest shrub wastes, namely bushes (Cytisus multiflorus, Spartium junceum, Acacia dealbata and Pterospartum tridentatum) has been studied in a conical spouted bed reactor operating at 500 °C, with a continuous biomass feed and char removal. High bio-oil yields in the 75-80 wt.% range have been obtained for all of the materials, with char yields between 16 and 23 wt.% and low gas yields (4-5 wt.%). Bio-oils are composed mainly of water (accounting for a concentration in the 34-40 wt.% range in the bio-oil), phenols, ketones, acids and furans, with lower contents of saccharides, aldehydes and alcohols. Although their composition depends on the raw material, the compounds are similar to those obtained with more conventional feedstocks. Copyright © 2012 Elsevier Ltd. All rights reserved.

  11. The Activity of TcCYS4 Modified by Variations in pH and Temperature Can Affect Symptoms of Witches’ Broom Disease of Cocoa, Caused by the Fungus Moniliophthora perniciosa

    Science.gov (United States)

    Freitas, Ana Camila Oliveira; Souza, Cristiane Ferreira; Monzani, Paulo Sérgio; Garcia, Wanius; de Almeida, Alex Alan Furtado; Costa, Marcio Gilberto Cardoso; Pirovani, Carlos Priminho

    2015-01-01

    The phytocystatins regulate various physiological processes in plants, including responses to biotic and abiotic stresses, mainly because they act as inhibitors of cysteine proteases. In this study, we have analyzed four cystatins from Theobroma cacao L. previously identified in ESTs libraries of the interaction with the fungus Moniliophthora perniciosa and named TcCYS1, TcCYS2, TcCYS3 and TcCYS4. The recombinant cystatins were purified and subjected to the heat treatment, at different temperatures, and their thermostabilities were monitored using their ability to inhibit papain protease. TcCYS1 was sensitive to temperatures above 50°C, while TcCYS2, TcCYS3, and TcCYS4 were thermostable. TcCYS4 presented a decrease of inhibitory activity when it was treated at temperatures between 60 and 70°C, with the greater decrease occurring at 65°C. Analyses by native gel electrophoresis and size-exclusion chromatography showed that TcCYS4 forms oligomers at temperatures between 60 and 70°C, condition where reduction of inhibitory activity was observed. TcCYS4 oligomers remain stable for up to 20 days after heat treatment and are undone after treatment at 80°C. TcCYS4 presented approximately 90% of inhibitory activity at pH values between 5 and 9. This protein treated at temperatures above 45°C and pH 5 presented reduced inhibitory activity against papain, suggesting that the pH 5 enhances the formation of TcCYS4 oligomers. A variation in the titratable acidity was observed in tissues of T. cacao during the symptoms of witches’ broom disease. Our findings suggest that the oligomerization of TcCYS4, favored by variations in pH, is an endergonic process. We speculate that this process can be involved in the development of the symptoms of witches’ broom disease in cocoa. PMID:25830226

  12. A phytoplasma closely related to the pigeon pea witches'-broom phytoplasma (16Sr IX) is associated with citrus huanglongbing symptoms in the state of São Paulo, Brazil.

    Science.gov (United States)

    Teixeira, D C; Wulff, N A; Martins, E C; Kitajima, E W; Bassanezi, R; Ayres, A J; Eveillard, S; Saillard, C; Bové, J M

    2008-09-01

    In February 2007, sweet orange trees with characteristic symptoms of huanglongbing (HLB) were encountered in a region of São Paulo state (SPs) hitherto free of HLB. These trees tested negative for the three liberibacter species associated with HLB. A polymerase chain reaction (PCR) product from symptomatic fruit columella DNA amplifications with universal primers fD1/rP1 was cloned and sequenced. The corresponding agent was found to have highest 16S rDNA sequence identity (99%) with the pigeon pea witches'-broom phytoplasma of group 16Sr IX. Sequences of PCR products obtained with phytoplasma 16S rDNA primer pairs fU5/rU3, fU5/P7 confirm these results. With two primers D7f2/D7r2 designed based on the 16S rDNA sequence of the cloned DNA fragment, positive amplifications were obtained from more than one hundred samples including symptomatic fruits and blotchy mottle leaves. Samples positive for phytoplasmas were negative for liberibacters, except for four samples, which were positive for both the phytoplasma and 'Candidatus Liberibacter asiaticus'. The phytoplasma was detected by electron microscopy in the sieve tubes of midribs from symptomatic leaves. These results show that a phytoplasma of group IX is associated with citrus HLB symptoms in northern, central, and southern SPs. This phytoplasma has very probably been transmitted to citrus from an external source of inoculum, but the putative insect vector is not yet known.

  13. Energetic evaluation of indigenous tree and shrub species in Basilicata, Southern Italy

    Directory of Open Access Journals (Sweden)

    Todaro L

    2007-01-01

    Full Text Available An evaluation of energetic characteristics such as high calorific value (on ash-free dry weight basis, ash, carbon, nitrogen, and moisture content of 12 indigenous tree and shrub species of Southern Italy (Basilicata Region was carried out. The studied species are the most abundant in this area: Quercus cerris L., Quercus pubescens Willd., Fraxinus ornus L., Populus canescens (Aiton Smith, Salix alba L., Alnus cordata L., Robinia pseudoacacia L., Olea europaea L., Spartium junceum L., Rubus hirtus W., Onopordum illirium L., Arundo donax L. For Q. cerris, Q. pubescens and O. europaea L., the energetic characteristics were measured by separating the wood components from the leaves. Q. cerris leaves contained the greatest high calorific value. F. ornus leaves had a greater ash content than the other samples while the lowest values were measured for S. junceum, Q. pubescens and R. pseudoacacia. The highest content of Carbon was in O. europaea leaves. A. donax and O. illirium had the lower level of high calorific value and Carbon than all the other species. The highest Nitrogen content was measured in Q. cerris leaves and the lowest one in F. ornus wood components.

  14. [Salem witches, flying brooms, and synthetic drugs].

    Science.gov (United States)

    Castellanos Tejero, Manuel; Castellanos Tejero, M de los Angeles

    2002-10-01

    As supplementary material to Health Education programs about synthetic drugs, the authors present a historical summary on LSD, stramonium and khat. "Tripis", Special K and other synthetic pills contain these substances and are being widely used by youths. The history of these main hallucinogenic active ingredients has a strong tie to the mythology of witchcraft and witches: a historically interesting time period bearing a large amount of religious intolerance. The objective of this review is to end the belief today's youth have that they are taking new substances which have no risks.

  15. Differences in Foliage Affect Performance of the Lappet Moth, Streblote panda: Implications for Species Fitness

    Science.gov (United States)

    Calvo, D.; Molina, J.M.

    2010-01-01

    Implications for adults' fitness through the foliage effects of five different host plants on larval survival and performance of the lappet moth, Streblote panda Hübner (Lepidoptera: Lasiocampidae), as well as their effect on species fitness were assayed. Larvae were reared under controlled laboratory conditions on excised foliage. Long-term developmental experiments were done using first instar larvae to adult emergence, and performance experiments were done using fifth instar larvae. Survival, development rates, and food use were measured. Foliar traits analysis indicated that leaves of different host plants varied, significantly affecting larvae performance and adult fitness. Pistacia lentiscus L. (Sapindales: Anacardiaceae), Arbutus unedo L. (Ericales: Ericaceae), and Retama sphaerocarpa (L.) Boiss. (Fabales: Fabaceae) were the most suitable hosts. Larvae fed on Tamarix gallica L. (Caryophyllales: Tamaricaceae) and Spartium junceum L. (Fabales: Fabaceae) showed the lowest survival, rates of development and pupal and adult weight. In general, S. panda showed a relatively high capacity to buffer low food quality, by reducing developmental rates and larvae development thereby reaching the minimum pupal weight that ensures adult survival. Less suitable plants seem to have indirect effects on adult fitness, producing smaller adults that could disperse to other habitats. PMID:21062148

  16. Eriophyid-myte (Acari: Eriophyoidea: Eriophyidae as moontlike beheeragente van ongewenste uitheemse plante in Suid-Afrika

    Directory of Open Access Journals (Sweden)

    C. Craemer

    1996-07-01

    Full Text Available Eriophyid-myte kom waarskynlik op die meeste hoër plante voor en is oor die algemeen baie gasheerspesifiek. Sommiges is skadelik genoeg om oorweeg te word vir biologiese beheerprogramme teen ongewenste plante. Algemene belangstelling in die gebruik van eriophyids vir onkruidbeheer het onlangs ontstaan en vyf spesies is reeds, meestal suksesvol, gebruik vir onkruidbeheer in ander lande. Eriophyid-myte is nog nie as onkruidbeheeragente in Suid-Afrika benut nie. Sewentien spesies wat simptome veroorsaak wat moontlik nuttig kan wees vir die beheer van 12 plantspesies, wat as onkruide in Suid-Afrika beskou word, word gelys en bespreek. Die onkruide is: Acacia saligna (Port Jackson, Acroptilon repens (Russiese dissel, Cardaria draba (peperbos cardaria, Chromolaena odorata (paraffienbos. Convolvulus arvensis (akkerwinde, Cuscuta epithymum (dodder, Hypericum perforatum (St. Janskruid, Lantana camara (lantana, Melia azedarach (sering, Opuntia inermis (doringturksvy, Solanum elaeagnifolium (satansbos, S. mauritianum (luisboom en Spartium junceum (Spaanse besem. Sommige van hierdie eriophyid-spesies kan moontlik suksesvol as onkruidbeheeragente in Suid-Afrika gebruik word en derhalwe is verdere navorsing in hierdie verband geregverdig.

  17. Phenolic compounds, methylxanthines and antioxidant activity in cocoa mass and chocolates produced from "witch broom disease" resistant and non resistant cocoa cultivars Compostos fenólicos, metilxantinas e atividade antioxidante em massa de cacau e chocolates produzidos a partir de cultivares resistentes e não resistentes a "vassoura de bruxa"

    Directory of Open Access Journals (Sweden)

    Paula Bacelar Leite

    2013-06-01

    Full Text Available The "witch broom disease" caused by the fungus called Moniliophthora perniciosa is one of the most important cocoa diseases in Latin America, causing around 70% production reduction in the southern Bahia. In attempt to solve the problem, many cultivars resistant to the disease have been recommended to farmers. On the other hand, the chocolate flavour is composed by many compounds whose formation depends on the genetic background, environment where cocoa is grown and processing operations. Therefore, this work aimed at determining the monomeric phenolic compounds, methylxanthines and antioxidant activity of cocoa mass and dark chocolate from cocoa cultivars resistant to "witch broom disease" and non resistant to the disease. The total phenolic compounds in cocoa mass did not vary among cultivars with values ranging from 23.95mg g-1 to 25.03mg g-1. Chocolates made from non resistant cultivars showed higher total phenolic compounds (19.11mg g-1 than SR162 and PH16 with 16.08mg g-1 and 15.46mg g-1, respectively. Epicatechin had higher content than catechin and the levels of these two compounds were higher in SR162. There were significant differences among samples of cocoa mass analyzed for caffeine. Chocolate made from SR162 had the highest amount of monomeric compounds due to its high concentration of catechin and epicatechin. The chocolate sample with the highest antioxidant activity was the SR162, followed by non resistant blend and PH16, showing relationship between the antioxidant activity and monomeric phenolics content.A "vassoura bruxa" causada pelo fungo Moniliophthora perniciosa, é uma das doenças mais importantes do cacau na América Latina, provocando uma redução de cerca de 70% na produção das amêndoas na Bahia. Para tentar resolver o problema, muitos cultivares resistentes à enfermidade têm sido recomendados para os agricultores. Por outro lado, as características do chocolate são oriundas de várias substâncias, cuja forma

  18. Assessment of genetic diversity on a sample of cocoa accessions resistant to witches' broom disease based on RAPD and pedigree data Avaliação da diversidade genética em uma amostra de acessos de cacau resistentes à doença vassoura-de-bruxa, com base em dados de RAPD e pedigree

    Directory of Open Access Journals (Sweden)

    Ronaldo Carvalho dos Santos

    2005-01-01

    Full Text Available Genetic diversity in cocoa (Theobroma cacao L. has been assessed based on morphological and molecular markers for germplasm management and breeding purposes. Pedigree data is available in cocoa but it has not been used for assessing genetic relatedness. The geneitic diversity of 30 clonal cocoa accessions resistant to witche´ broom disease, from the CEPEC series, were studied on the basis of RAPD data and pedigree information. Twenty of these accessions descend from the TSA-644 clone, originated from a cross between the Upper Amazon germplasm called Scavina-6, the main source of resistance to witches' broom disease, and IMC-67. The ten remaining clones come from different sources including Amazon and Trinitario germplasm. RAPD data was collected using 16 primers and pedigree information was obtained from the International Cocoa Germplasm Database. Genetic similarities, genetic distances and coefficient of parentage were calculated using available software. Relatively low genetic diversity was observed in this germplasm set, probably because of great genetic relatedness amongst accessions studied and the poor representation of the germplasm. The TSA-644 descendants were more diverse than the other accessions used in the study. This might be due to the origin of the TSA clone, which was derived from highly divergent genotypes. Association between genetic similarities based on RAPD data and coefficient of parentage, based on pedigree data, was very low, probably due to the homogeneity of the breeding stocks and poor pedigree information. These findings are useful to cocoa breeders in planning crosses for the development of hybrid and clonal cultivars.A diversidade genética em cacau (Theobroma cacao L., embasada em dados morfológicos e em marcadores moleculares, tem sido avaliada com fins de manejo de germoplasma e uso no melhoramento genético. Dados de genealogia de cacau, embora disponíveis, não têm sido utilizados. Foi analisada a

  19. Presence of a Phytoplasma Associated with Witches’-Broom Disease in Ugni molinae Turcz. and Gaultheria phillyreifolia (Pers. Sleumer Determined by DAPI, PCR, and DNA Sequencing Presencia de un Fitoplasma Asociado a la Enfermedad de "Escoba de Bruja" en Ugni molinae Turcz. y Gaultheria phillyreifolia (Pers. Sleumer Determinado Mediante DAPI, PCR y Secuenciación de ADN

    Directory of Open Access Journals (Sweden)

    Nolberto Arismendi S

    2010-03-01

    Full Text Available Murta (Ugni molinae Turcz. and common chaura (Gaultheria phillyreifolia (Pers. Sleumer are native species of Chile. Plants of both species have shown over-branching like witches' broom. The causal agents of these symptoms in many plants are phytoplasma. To verify the presence of these microorganisms, DAPI (4',6-diamidino-2-phenylindole staining analysis and polymerase chain reaction (PCR were performed in symptomatic and asymptomatic plants. Positive PCR samples were sequenced to identify the pathogens involved. In individuals of both species with witches’ broom symptoms, DAPI staining showed fluorescent bodies in the phloem tissues, but not in asymptomatic plants. Verification by nested-PCR, phytoplasmatic DNA was amplified from diseased murta and chaura, but not in apparently healthy plants. Sequencing of amplified products allowed locating phytoplasma within the ash yellows group (16SrVII and related to Candidatus phytoplasma fraxini. This is the first report of phytoplasma in Chilean native species. Considering the diversity of plant species infected by the ash yellows group suggests that G. phillyreifolia and U. molinae could be a phytoplasma reservoir for other economically important agricultural crops.La murta (Ugni molinae Turcz. y la chaura común (Gaultheria phillyreifolia (Pers. Sleumer son especies nativas de Chile. En plantas de ambas especies se ha observado una sobre-ramificación de tipo "escoba de bruja". En muchas plantas los agentes causales de esta sintomatología son fitoplasmas. Para verificar la presencia de estos microorganismos se analizaron plantas con y sin síntomas mediante tinciones DAPI (4’,6-diamidino-2-fenilindol y reacción en cadena de la polimerasa (PCR. Muestras positivas en la PCR fueron secuenciadas para identificar al fitopatógeno implicado. En individuos de ambas especies con síntomas de escoba de bruja, la tinción DAPI permitió observar cuerpos fluorescentes en los tejidos del floema, situaci

  20. A dinâmica da pesquisa em redes: avanços e desafios do seqüenciamento genético da vassoura de bruxa e do eucalipto | The dynamics of research in networks: progress and challenge in DNA sequencing of witches’ broom and eucalyptus

    Directory of Open Access Journals (Sweden)

    Eliane Dias

    2008-04-01

    Full Text Available Resumo A pesquisa em redes tem se destacado como uma forma importante de organização dos trabalhos em genômica. Dois projetos conduzidos recentemente no Brasil – um sobre a Moniliophthora (ex Crinipellis perniciosa, agente causador da doença vassoura de bruxa em cacau, e outro sobre o seqüenciamento do eucalipto – possibilitam essa afirmação. Este artigo analisa a dinâmica e o funcionamento dessas redes de pesquisa e sua importância como geradoras de conhecimento e inovações, evidenciando as diferenças na concepção, evolução e integração entre atores. Os resultados obtidos apontam o impacto positivo dessas ações (sem desconsiderar os riscos inerentes e fornecem elementos para a implementação de políticas públicas para o desenvolvimento de arranjos cooperativos em áreas estratégicas. Palavras-chave Redes de pesquisa, organização da ciência e da tecnologia, pesquisa em genômica, dinâmica inovativa.   Abstract Network organization has been key for genomics research. Two research projects recently conducted in Brazil - one focused on Moniliophthora perniciosa, which causes witches' broom (vassoura de bruxa disease in cocoa, and the other on eucalyptus – were selected to discuss this statement. This article analyzes the dynamics and functioning of both networks and their importance in generating knowledge and innovation, pointing out the differences in project conception and evolution and in integration between actors. Results obtained highlight the strongly positive impact of these networks and provide some guidelines for public policy directed to the development of cooperative arrangements in strategic areas. Keywords research networks, science and technology organization, genomics research, innovative dynamics

  1. Edirne’de süpürge üretimi çalışanlarında SO2 etkisinin değerlendirilmesi - 2012/Evaluation of SO2 effetcs among workers of the broom-making business in Edirne-2012

    Directory of Open Access Journals (Sweden)

    Ufuk berberoğlu

    2013-08-01

    bölümde çalışma sırasında, kişisel koruyucu maske kullanılmalıdır. Anahtar kelimeler: İç ortam havası, SO2, süpürge işçileri, solunum fonksiyon testi  Abstract Objective: Sulphur dioxide (SO2,which is encountered in the ambient air of the working rooms used for making brooms, is a gas that primarily affects the respiratory system of the staff. Method: This study was conducted to investigate the exposure to SO2 which is used in the production process in broom-making in Edirne between January-February of 2012. A questionnaire was applied to 25 broom-makers and to 25 other individuals. The study included demographic data, a history and a physical examination of the respiratory system, and the results of spirometry. The amount of SO2 in the rooms used for the industrial processes were measure by a Gas Alert Micro 5 brand device. Results: The average age of the workers affected by SO2 and of the non exposured group were (47.6±1.2, 45.2±3.4 respectively and the rates of smoking were (64%, 64% similar (p>0.05. Differences in sputum levels (32% and 16%, p<0.05 and cough rates (24% and 12%, p<0.05 for the workers and controls respectively were statistically significant; whereas dyspnea (20% and 20%, p>0.05 and pathological respiratory sounds ratios (12% and 12%, p>0.05 were similar. Spirometry findings including FEV1, FVC, FEV1/FVC and MEF (FEF25-75% were significantly lower for the workers than the control group (p<0.05. Conclusion: SO2 room gas amounts were higher than both WHO and National Institute for Occupational Safety and Health (NIOSH standards. SO2 gas amounts higher than the standards are harmful especially for the respiratory system of the workers. Workers in this industry should be warned of the potential risks and should be educated. Workers of the complex using SO2 should use masks during working hours and rooms should have efficient air-conditioning. Key Words: Indoor air, SO2, sweeper workers, pulmonary function test  

  2. Aksenoks proves true to "new broom" theory / Aaron Eglitis

    Index Scriptorium Estoniae

    Eglitis, Aaron

    2005-01-01

    Riia linnapea Aivars Aksenoks tühistas linnas hasartmängukeelu, väites, et see oli eelmise linnapea Gundars Bojarsi valimiseelne kampaania. Aksenoks tegi riigi korruptsioonivastase võitluse büroole ettepaneku uurida eelmise Riia linnapea ja välireklaamifirma Clear Channel Latvia vahelist tehingut

  3. Evolução da vassoura-de-bruxa e avaliação da resistência em progênies de cupuaçuzeiro Evolution of the witch's broom disease and evaluation of resistance in cupuassu progenies

    Directory of Open Access Journals (Sweden)

    Rafael Moysés Alves

    2009-12-01

    Full Text Available Com o objetivo de conhecer a evolução da doença vassoura-de-bruxa, a taxa de segregação e estimar parâmetros genéticos, foi conduzido um experimento com 21 progênies de irmãos completos de cupuaçuzeiro, instalado em Belém, Pará. As progênies foram obtidas pelo cruzamento controlado de clones resistentes com clones resistentes, clones resistentes com clones suscetíveis e, clones suscetíveis com clones suscetíveis. Foram avaliadas também três progênies de meios-irmãos como testemunhas. Os experimentos foram avaliados ao nível de indivíduos, e as análises foram conduzidas via metodologia de modelos lineares mistos (procedimento REMl/BlUP, como delineamento em blocos incompletos desbalanceados, com tratamentos comuns entre dois experimentos. As variáveis avaliadas foram: percentagem de plantas resistentes ao ataque da doença no ramo, inflorescência, fruto imaturo e maduro, no período de 2002 a 2007. Os resultados mostraram que a emissão de vassoura vegetativa é especialmente importante entre julho e setembro. A evolução da doença evidencia que as podas fitossanitárias devem ser realizadas no final da safra, nos meses de maio/junho, e repassadas em setembro/outubro. A população estudada oferece excelente possibilidade de seleção e ganho genético, respaldada pelos elevados índices de variabilidade genética e herdabilidade dos caracteres de resistência. As progênies segregaram tanto para os sintomas de vassoura nos ramos, nas inflorescências, como nos frutos imaturos e maduros. Para o controle integrado desta doença, os resultados mostram a importância da associação de materiais genéticos resistentes ou moderadamente resistentes à vassoura-de-bruxa com as podas fitossanitárias.This paper aimed to study the evolution and individual segregation of the witch's broom disease and estimate the genetic parameters in trials with 21 full sib families of Cupuaçú established in Belém, Pará. The progenies were

  4. Multibeam collection for FK150324: Multibeam data collected aboard Falkor from 2015-03-24 to 2015-04-06, Broome, Australia to Broome, Australia

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set is part of a larger set of data called the Multibeam Bathymetry Database (MBBDB) where other similar data can be found at...

  5. Short Rotation Forestry (SRF in a Mediterranean Environment Under Limited Energy Inputs

    Directory of Open Access Journals (Sweden)

    Antonio Sergio De Franchi

    2010-10-01

    Full Text Available The aim of this work is comparing the two year performance (diameter, total height and mortality of twenty tree and shrub species in a semi arid environment. The research also wants to supply recommendation on the agronomic cropping techniques in areas where rainfall is the main limiting factor and water use is strictly limited. Woody biomass is gaining increasing importance for energy production in Italy. During the last five years, roughly 5000 ha of Short Rotation Forestry (SRF have been planted, mostly in northern Italy, especially using poplar clones. However, in Southern Italy, due to the poor rainfall and the lack of knowledge existing on the species to use, few groves have been established. The studied groves were set in December 2005 in a Mediterranean area where the total year rainfall is not higher than 600 mm (mostly in autumn and winter. Twenty species (Salix cinerea, Ulmus carpinifolia, Corylus avellana, Spartium junceum, Acer saccharinum, Morus alba, Saphora japonica, Eleagnus angustifolia, Fraxinus angustifolia (var oxicarpa, Sambucus nigra, Robinia pseudoacacia, Populus nigra, Albizia julibrissis, Populus alba, Salix alba, Ailanthus altissima, Alnus cordata, Ficus carica, Eucalyptus camaldulensis, Celtis australis were planted in “collection” plots and set in singular plots on single rows (3 m X 0.5 m spacing. Six species (R. pseudoacacia, P. nigra, P. alba, S. nigra, E. camaldulensis, and A. altissima were planted in eighteen random “experimental” split-plots, using single and twin rows (0.5 m spacing between plants. Plots had a rectangular plant spacing (3 m between singular and twin rows, 0.5 m on each row. Plant density was roughly 6670 cuttings ha-1 in “collection” plots with singular rows and 10950 cuttings ha-1 in “experimental” plots using single and twin rows. The expected harvest interval ranges from 2 to 5 years, depending on the first results. In the “collection” plots, the first results showed

  6. Decontamination and functional reclamation of dredged brackish sediments.

    Science.gov (United States)

    Doni, S; Macci, C; Peruzzi, E; Iannelli, R; Ceccanti, B; Masciandaro, G

    2013-07-01

    The continuous stream of sediments, dredged from harbors and waterways for keeping shipping traffic efficiency, is a considerable ongoing problem recognized worldwide. This problem gets worse as most of the sediments dredged from commercial ports and waterways turn out to be polluted by a wide range of organic and inorganic contaminants. In this study, phytoremediation was explored as a sustainable reclamation technology for turning slightly-polluted brackish dredged sediments into a matrix feasible for productive use. To test this possibility, a phytoremediation experimentation was carried out in containers of about 0.7 m(3) each, filled with brackish dredged sediments contaminated by heavy metals and hydrocarbons. The sediments were pre-conditioned by adding an agronomic soil (30 % v/v) to improve their clayey granulometric composition, and by topping the mixture with high quality compost (4 kg m(-2)) to favour the initial adaptation of the selected vegetal species. The following plant treatments were tested: (1) Paspalum vaginatum, (2) Phragmites australis, (3) Spartium junceum + P. vaginatum, (4) Nerium oleander + P. vaginatum, (5) Tamarix gallica + P. vaginatum, and (6) unplanted control. Eighteen months after the beginning of the experimentation, all the plant species were found in healthy condition and well developed. Throughout the whole experiment, the monitored biological parameters (total microbial population and dehydrogenase activity) were generally observed as constantly increasing in all the planted sediments more than in the control, pointing out an improvement of the chemico-physical conditions of both microorganisms and plants. The concentration decrease of organic and inorganic contaminants (>35 and 20 %, respectively) in the treatments with plants, particularly in the T. gallica + P. vaginatum, confirmed the importance of the root-microorganism interaction in activating the decontamination processes. Finally, the healthy state of

  7. Short Rotation Forestry (SRF in a Mediterranean Environment Under Limited Energy Inputs

    Directory of Open Access Journals (Sweden)

    Stella Lovelli

    2010-12-01

    Full Text Available The aim of this work is comparing the two year performance (diameter, total height and mortality of twenty tree and shrub species in a semi arid environment. The research also wants to supply recommendation on the agronomic cropping techniques in areas where rainfall is the main limiting factor and water use is strictly limited. Woody biomass is gaining increasing importance for energy production in Italy. During the last five years, roughly 5000 ha of Short Rotation Forestry (SRF have been planted, mostly in northern Italy, especially using poplar clones. However, in Southern Italy, due to the poor rainfall and the lack of knowledge existing on the species to use, few groves have been established. The studied groves were set in December 2005 in a Mediterranean area where the total year rainfall is not higher than 600 mm (mostly in autumn and winter. Twenty species (Salix cinerea, Ulmus carpinifolia, Corylus avellana, Spartium junceum, Acer saccharinum, Morus alba, Saphora japonica, Eleagnus angustifolia, Fraxinus angustifolia (var oxicarpa, Sambucus nigra, Robinia pseudoacacia, Populus nigra, Albizia julibrissis, Populus alba, Salix alba, Ailanthus altissima, Alnus cordata, Ficus carica, Eucalyptus camaldulensis, Celtis australis were planted in “collection” plots and set in singular plots on single rows (3 m X 0.5 m spacing. Six species (R. pseudoacacia, P. nigra, P. alba, S. nigra, E. camaldulensis, and A. altissima were planted in eighteen random “experimental” split-plots, using single and twin rows (0.5 m spacing between plants. Plots had a rectangular plant spacing (3 m between singular and twin rows, 0.5 m on each row. Plant density was roughly 6670 cuttings ha-1 in “collection” plots with singular rows and 10950 cuttings ha-1 in “experimental” plots using single and twin rows. The expected harvest interval ranges from 2 to 5 years, depending on the first results. In the “collection” plots, the first results showed

  8. Recent progress of push-broom infrared hyper-spectral imager in SITP

    Science.gov (United States)

    Wang, Yueming; Hu, Weida; Shu, Rong; Li, Chunlai; Yuan, Liyin; Wang, Jianyu

    2017-02-01

    In the past decades, hyper-spectral imaging technologies were well developed in SITP, CAS. Many innovations for system design and key parts of hyper-spectral imager were finished. First airborne hyper-spectral imager operating from VNIR to TIR in the world was emerged in SITP. It is well known as OMIS(Operational Modular Imaging Spectrometer). Some new technologies were introduced to improve the performance of hyper-spectral imaging system in these years. A high spatial space-borne hyper-spectral imager aboard Tiangong-1 spacecraft was launched on Sep.29, 2011. Thanks for ground motion compensation and high optical efficiency prismatic spectrometer, a large amount of hyper-spectral imagery with high sensitivity and good quality were acquired in the past years. Some important phenomena were observed. To diminish spectral distortion and expand field of view, new type of prismatic imaging spectrometer based curved prism were proposed by SITP. A prototype of hyper-spectral imager based spherical fused silica prism were manufactured, which can operate from 400nm 2500nm. We also made progress in the development of LWIR hyper-spectral imaging technology. Compact and low F number LWIR imaging spectrometer was designed, manufactured and integrated. The spectrometer operated in a cryogenically-cooled vacuum box for background radiation restraint. The system performed well during flight experiment in an airborne platform. Thanks high sensitivity FPA and high performance optics, spatial resolution and spectral resolution and SNR of system are improved enormously. However, more work should be done for high radiometric accuracy in the future.

  9. UNIFORM FARM OPERATIONS (UFO ON HEMP BROOM RAPE SEED GERMINATION BY BIOLOGICAL CONTROL MANAGEMENT IN IRAN

    Directory of Open Access Journals (Sweden)

    Behzad SANI

    2014-06-01

    Full Text Available Weeds are a constant problem in agronomy and they not only compete with crops for water, nutrients, sunlight, andspace but also harbor insect and disease pests; clog irrigation and drainage systems; undermine crop quality; anddeposit weed seeds into crop harvests. In order to the microbial herbicide (Orocide influence on seed germinationin Orobancheramosa L., this experiment was conducted in 2011 at Islamic Azad University Shahr-e-Qods Branch inTehran by a completely randomized design with four replications. The factor studied included use of Orocide(0(T1, 2(T2, 4(T3 and 6(T4 percentage. The results showed that the effect of microbial herbicide (Orocide wassignificant on germination percentage of Orobancheramosa. Mean comparison showed that the highest germinationpercentage (79% was achieved by non-application of Orocide and lowest germination percentage (8% wasachieved by application of 4% Orocide.The results of this experiment showed that the use of Orocide can decreasedthe germination in Orobancheramosa L. that is uniform farm operations (UFO very important for weed biologicalcontrol management at Iran.

  10. A new broom? The space agency faces a shake-up

    CERN Multimedia

    2001-01-01

    The results of a recent report have pointed a grim picture of the agency's mismanagement of the ISS. The newly appointed administrator of NASA is likely to implement some combination of mission cancellations and staff lay-offs to cut costs (1/2 page)

  11. Multigene characterization of a new 'Candidatus Phytoplasma rubi'-related strain associated with blackberry witches' broom

    Czech Academy of Sciences Publication Activity Database

    Fránová, Jana; de Sousa, E.; Koloniuk, Igor; Mimoso, C.; Matos, J.; Cardoso, F.; Contaldo, N.; Paltrinieri, S.; Bertaccini, A.

    2016-01-01

    Roč. 66, č. 3 (2016), s. 1438-1446 ISSN 1466-5026 Institutional support: RVO:60077344 Keywords : 16SRibosomal-RNA * flavescence doree * gene-sequences Subject RIV: EE - Microbiology, Virology Impact factor: 2.134, year: 2016

  12. Fruit Trees and Tamarisk Brooms: Grafting a Unique Perspective of American History in Willa Cather's Death Comes for the Archbishop

    National Research Council Canada - National Science Library

    Despain, Martha J

    2005-01-01

    .... Employing the unique metaphor of grafting fruit trees, Cather produces new varieties of Americans in "Death Comes for the Archbishop" that highlight her unique perspective on the formation of America...

  13. Phytoplasma associated with witches´-broom disease of Ulmus minor in the Czech Republic. Electron microscopy and molecular characterization

    Czech Academy of Sciences Publication Activity Database

    Navrátil, M.; Šafářová, D.; Válová, P.; Fránová, Jana; Šimková, Marie

    2009-01-01

    Roč. 54, č. 1 (2009), s. 37-42 ISSN 0015-5632 R&D Projects: GA AV ČR(CZ) 1QS500510558 Institutional research plan: CEZ:AV0Z50510513 Keywords : Ulmus minor * Candidatus Phytoplasma ulmi * PCR * sequencing Subject RIV: EE - Microbiology, Virology Impact factor: 0.978, year: 2009

  14. REACTION OF INTRODUCED BEAN (PHASEOLUS ACCESSIONS TO THE INFESTATION BY THIELAVIOPSIS BASICOLA (BERKELEY & BROOME UNDER NATURAL EPIPHYTOTIC CONDITIONS

    Directory of Open Access Journals (Sweden)

    O. Georgieva

    2015-01-01

    Full Text Available A periodic phytopathology field monitoring was conducted on 35 introduced common bean (Phaseolus accessions at Maritsa Vegetable Crops Research Institute in 2014. The epiphytotic disease black root rot on the bean crops (over 75 % reduction of the stand was recorded for the first time for the area of Bulgaria. The causal agent isolated from the plant tissue was identified as the fungus Thielaviopsis basicola (Berkeley Ferraris. A strong relationship between disease severity variation and environmental and soil conditions was established. Black root rot was most severe when cool and wet weather occurred from seedling time to about three weeks after planting, combined with increased soil compaction. Field resistance was recorded in Bulgarian var. “Plovdivski zult”, var. “Starozagorski tzer” and line № 564 (3,66%, 5.33% and 6,50 % dumping-off of bean seedlings, respectively. Bean accession introduced from dry climate areas were highly susceptible to black root rot pathogen (over 76.0 % dumping-off of bean seedlings. Indirect relationship was found between bean tolerance to Th. basicola and presence of the anthocyanin in the hypocotyl and seed coat color. Install the average negative correlation between seed color signs (and hypocotyl and the resistance of plants to Th. basicola. Samples with resistance to black root rot belong to the group with beige, red, brown or black color of seeds. The presence of phenolic compounds (anthocyanins in the seed coat and hypocotyls beans can serve as an indirect indication of the selection of resistant to black rot breeding materials.

  15. Leachate treatment system using constructed wetlands, Town of Fenton sanitary landfill, Broome County, New York. Final report

    Energy Technology Data Exchange (ETDEWEB)

    1993-11-01

    Municipal sanitary landfills generate leachate that New York State regulations require to be collected and treated to avoid contaminating surface water and groundwater. One option for treating leachate is to haul it to municipal wastewater treatment facility. This option may be expensive, may require excessive energy for transportation, and may require pretreatment to protect the receiving facility`s processes. An alternative is on-site treatment and discharge. Personnel from the Town of Fenton, New York; Hawk Engineering, P.C.; Cornell University; and Ithaca College designed, built, and operated a pilot constructed wetland for treating leachate at the Town of Fenton`s municipal landfill. The system, consisting of two overland flow beds and two subsurface flow beds has been effective for 18 months in reducing levels of ammonia (averaging 85% removal by volatilization and denitrification) and total iron (averaging 95% removal by precipitation and sedimentation), two key constituents of the Fenton landfill`s leachate. The system effects these reductions with zero chemical and energy inputs and minimal maintenance. A third key constituent of the leachate, manganese, apparently passes through the beds with minimal removal. Details and wetland considerations are described.

  16. Structural studies of alternative oxidase (AOX) from moniliophthora perniciosa, the causal agent of witches' broom disease in cacao: a membrane-associated protein

    International Nuclear Information System (INIS)

    Oliveira, J.F.; Prado, P.F.V.; Tiezzi, H.O.; Dias, S.M.G.; Ambrosio, A.L.B.; Thomazella, D.P.T.; Teixeira, P.J.P.L.; Pereira, G.A.G.

    2012-01-01

    Full text: Alternative oxidase (AOX) is a protein attached to the inner mitochondrial membrane that receives electrons directly from reduced ubiquinone and catalyzes the reduction of oxygen to water. AOX is a non-proton motive terminal quinol oxidase that enables cell respiration to continue even in the presence of inhibitors targeting the complexes of the respiratory chain. This protein is present in higher plants, pathogenic fungi and some parasites. The structural characterization of AOX becomes interesting due to its potential as a fungicide target. AOX is predicted to be a monotopic interfacial membrane protein interacting with a single leaflet of the lipid bilayer, rather than transmembrane. Amino acid sequence analysis reveals the presence of two conserved glutamate-histidine motifs, identifying it as a member of the diiron carboxylate protein family. The AOX model is defined by two pairs of helices forming a four helix bundle and an additional hydrophobic connecting sequence between the two helical pairs is proposed to act as the membrane anchoring region. In this work we aim at production, purification and crystallization of the AOX protein from M. perniciosa for further structural studies of this membrane-associated protein, by X-ray protein crystallography (author)

  17. Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease.

    Science.gov (United States)

    Silva Monteiro de Almeida, Dayanne; Oliveira Jordão do Amaral, Daniel; Del-Bem, Luiz-Eduardo; Bronze Dos Santos, Emily; Santana Silva, Raner José; Peres Gramacho, Karina; Vincentz, Michel; Micheli, Fabienne

    2017-01-01

    Transcriptional regulation, led by transcription factors (TFs) such as those of the WRKY family, is a mechanism used by the organism to enhance or repress gene expression in response to stimuli. Here, we report on the genome-wide analysis of the Theobroma cacao WRKY TF family and also investigate the expression of WRKY genes in cacao infected by the fungus Moniliophthora perniciosa. In the cacao genome, 61 non-redundant WRKY sequences were found and classified in three groups (I to III) according to the WRKY and zinc-finger motif types. The 61 putative WRKY sequences were distributed on the 10 cacao chromosomes and 24 of them came from duplication events. The sequences were phylogenetically organized according to the general WRKY groups. The phylogenetic analysis revealed that subgroups IIa and IIb are sister groups and share a common ancestor, as well as subgroups IId and IIe. The most divergent groups according to the plant origin were IIc and III. According to the phylogenetic analysis, 7 TcWRKY genes were selected and analyzed by RT-qPCR in susceptible and resistant cacao plants infected (or not) with M. perniciosa. Some TcWRKY genes presented interesting responses to M. perniciosa such as Tc01_p014750/Tc06_p013130/AtWRKY28, Tc09_p001530/Tc06_p004420/AtWRKY40, Tc04_p016130/AtWRKY54 and Tc10_p016570/ AtWRKY70. Our results can help to select appropriate candidate genes for further characterization in cacao or in other Theobroma species.

  18. Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease

    Science.gov (United States)

    Silva Monteiro de Almeida, Dayanne; Oliveira Jordão do Amaral, Daniel; Del-Bem, Luiz-Eduardo; Bronze dos Santos, Emily; Santana Silva, Raner José; Peres Gramacho, Karina; Vincentz, Michel

    2017-01-01

    Transcriptional regulation, led by transcription factors (TFs) such as those of the WRKY family, is a mechanism used by the organism to enhance or repress gene expression in response to stimuli. Here, we report on the genome-wide analysis of the Theobroma cacao WRKY TF family and also investigate the expression of WRKY genes in cacao infected by the fungus Moniliophthora perniciosa. In the cacao genome, 61 non-redundant WRKY sequences were found and classified in three groups (I to III) according to the WRKY and zinc-finger motif types. The 61 putative WRKY sequences were distributed on the 10 cacao chromosomes and 24 of them came from duplication events. The sequences were phylogenetically organized according to the general WRKY groups. The phylogenetic analysis revealed that subgroups IIa and IIb are sister groups and share a common ancestor, as well as subgroups IId and IIe. The most divergent groups according to the plant origin were IIc and III. According to the phylogenetic analysis, 7 TcWRKY genes were selected and analyzed by RT-qPCR in susceptible and resistant cacao plants infected (or not) with M. perniciosa. Some TcWRKY genes presented interesting responses to M. perniciosa such as Tc01_p014750/Tc06_p013130/AtWRKY28, Tc09_p001530/Tc06_p004420/AtWRKY40, Tc04_p016130/AtWRKY54 and Tc10_p016570/ AtWRKY70. Our results can help to select appropriate candidate genes for further characterization in cacao or in other Theobroma species. PMID:29084273

  19. Hydrogeology of the Susquehanna River valley-fill aquifer system in the Endicott-Vestal area of southwestern Broome County, New York

    Science.gov (United States)

    Randall, Allan D.; Kappel, William M.

    2015-07-29

    The village of Endicott, New York, and the adjacent town of Vestal have historically used groundwater from the Susquehanna River valley-fill aquifer system for municipal water supply, but parts of some aquifers in this urban area suffer from legacy contamination from varied sources. Endicott would like to identify sites distant from known contamination where productive aquifers could supply municipal wells with water that would not require intensive treatment. The distribution or geometry of aquifers within the Susquehanna River valley fill in western Endicott and northwestern Vestal are delineated in this report largely on the basis of abundant borehole data that have been compiled in a table of well records.

  20. Structural studies of alternative oxidase (AOX) from moniliophthora perniciosa, the causal agent of witches' broom disease in cacao: a membrane-associated protein

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira, J.F.; Prado, P.F.V.; Tiezzi, H.O.; Dias, S.M.G.; Ambrosio, A.L.B. [Laboratorio Nacional de Biociencias - LNBIO, Campinas, SP (Brazil); Thomazella, D.P.T.; Teixeira, P.J.P.L.; Pereira, G.A.G. [Universidade Estadual de Campinas (UNICAMP), SP (Brazil)

    2012-07-01

    Full text: Alternative oxidase (AOX) is a protein attached to the inner mitochondrial membrane that receives electrons directly from reduced ubiquinone and catalyzes the reduction of oxygen to water. AOX is a non-proton motive terminal quinol oxidase that enables cell respiration to continue even in the presence of inhibitors targeting the complexes of the respiratory chain. This protein is present in higher plants, pathogenic fungi and some parasites. The structural characterization of AOX becomes interesting due to its potential as a fungicide target. AOX is predicted to be a monotopic interfacial membrane protein interacting with a single leaflet of the lipid bilayer, rather than transmembrane. Amino acid sequence analysis reveals the presence of two conserved glutamate-histidine motifs, identifying it as a member of the diiron carboxylate protein family. The AOX model is defined by two pairs of helices forming a four helix bundle and an additional hydrophobic connecting sequence between the two helical pairs is proposed to act as the membrane anchoring region. In this work we aim at production, purification and crystallization of the AOX protein from M. perniciosa for further structural studies of this membrane-associated protein, by X-ray protein crystallography (author)

  1. Multibeam collection for FK150410: Multibeam data collected aboard Falkor from 2015-04-10 to 2015-05-04, Broome, Australia to Darwin, Australia

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set is part of a larger set of data called the Multibeam Bathymetry Database (MBBDB) where other similar data can be found at...

  2. First report of 16SrII-C subgroup phytoplasma causing phyllody and witches’-broom disease in Soybean in Tanzania

    NARCIS (Netherlands)

    Murithi, H.; Owati, A.; Madata, C.S.; Joosten, M.; Beed, F.; Lava Kumar, P.

    2015-01-01

    Soybean production in Tanzania is steadily increasing, driven by growing demand from feed and livestock producers and also for human consumption. Soybean production area has increased from 795 ha in 2003 to 4,100 ha in 2013 (FAO 2014). Major soybean production is in the Morogro, Ruvuma, Iringa, and

  3. Sharing information and collections on phytoplasmas: from QBOL to QBANK

    DEFF Research Database (Denmark)

    Bertaccini, Assunta; Paltrinieri, Samanta; Makarova, Olga

    2011-01-01

    A total of 154 phytoplasma strains from 15 ribosomal groups were employed for barcode sequences production. Besides strains in periwinkle, 36 strains in natural infected plants such as napier grass, grapevine, plum, jujube, apple, pear, spartium, pine tree, hibiscus and erigeron were employed...

  4. Sapu pada Kacang Hias (Arachis pintoi: Penyakit Baru yang Berasosiasi dengan Fitoplasma

    Directory of Open Access Journals (Sweden)

    Budiyarto .

    2013-04-01

    Full Text Available Pinto peanut (Arachis pintoi witches’ broom is a new disease found in Bogor at high incidence and has not yet been reported elsewhere. Symptom type of the disease is very similar to that of peanut (A. hypogea witches’ broom, which has been well known to be associated with phytoplasma. Both A. pintoi and A. hypogea witches’ broom causal agent are transmissible to both healthy A. pintoi or A. hypogea, with grafting or vector transmission using peanut witches’ broom phytoplasma specific vector, Orosius argentatus. All combination of transmission means resulted in an identical type of witches’ broom symptom. Further confirmation using polymerase chain reaction detection and identification of phytoplasma employing universal primer pair for phytoplasmas (P1/P7, showed that all of the diseased plants, either from field or transmitted plants is associated with phytoplasma. The A. pintoi witches’ broom phytoplasma is likely identical to that of A. hypogea.Key words: Arachis pintoi, Orosius argentatus, phytoplasma, witches’ broom

  5. Candidatus Phytoplasma brasiliense associado ao superbrotamento do hibisco (Hibiscus rosa-sinensis L. no Estado de São Paulo Candidatus Phytoplasma brasiliense associated with hibiscus witches' broom in the State of São Paulo-Brazil

    Directory of Open Access Journals (Sweden)

    Eliane Gonçalves da Silva

    2009-09-01

    Full Text Available Plantas de hibisco com superbrotamento e definhamento seguido de morte têm sido observadas nos municípios de São Paulo, Campinas e Piracicaba. Como os sintomas são sugestivos daqueles induzidos por fitoplasmas, o presente trabalho buscou identificar o possível fitoplasma associado com a doença. Assim, 14 plantas sintomáticas de hibisco foram coletadas em Piracicaba (SP e submetidas ao PCR duplo com os primers P1/Tint-R16F2n/R2 e ao exame em microscópio eletrônico de transmissão. A identificação foi realizada por análise de RFLP com as enzimas de restrição BfaI, DraI, HaeIII, HhaI, HpaII, MboI, MseI, RsaI e TaqI. Testes de transmissão foram conduzidos com enxertia de ramos e uso de Cuscuta subinclusa. Os resultados de nested-PCR revelaram a presença consistente de fitoplasmas em todas as plantas sintomáticas e foram confirmados pela observação de corpúsculos pleomórficos no floema, através da microscopia eletrônica. A análise de RFLP mostrou que o fitoplasma encontrado em hibisco pertence ao grupo 16SrXV, o mesmo grupo do Candidatus Phytoplasma brasiliense. O fitoplasma foi transmitido de planta doente para sadia, tanto pela enxertia como pela C. subinclusa, demonstrando ser o agente do superbrotamento do hibisco.Ornamental hibiscus have been affected by shoot proliferation and decline followed by death in several cities in São Paulo State, especially São Paulo, Campinas and Piracicaba. As the symptoms are suggestives of those induced by phytoplasmas, the present work aimed to identify the possible phytoplasma associated with the disease. Fourteen symptomatic hibiscus were sampled in Piracicaba, submitted to nested-PCR with the primers P1/Tint-R16F2n/R2 and processed by transmission electron microscopy. The identification was made by RFLP analyses with the restriction enzymes BfaI, DraI, HaeIII, HhaI, HpaII, MboI, MseI, RsaI, and TaqI. Transmission assays were performed by grafting and Cuscuta subinclusa. The presence of phytoplasma was always detected by molecular technique and electron microscopy in all samples. The RFLP analyses showed that the phytoplasma belongs to group 16SrXV, the same group of the Candidatus Phytoplasma brasiliense. It was experimentally transmitted by C. subinclusa to periwinkle and by grafting to hibiscus in which it reproduced the original symptoms. This indicates that the studied phytoplasma is the causal agent the disease.

  6. Tc-cAPX, a cytosolic ascorbate peroxidase of Theobroma cacao L. engaged in the interaction with Moniliophthora perniciosa, the causing agent of witches' broom disease.

    Science.gov (United States)

    Camillo, Luciana Rodrigues; Filadelfo, Ciro Ribeiro; Monzani, Paulo Sérgio; Corrêa, Ronan Xavier; Gramacho, Karina Peres; Micheli, Fabienne; Pirovani, Carlos Priminho

    2013-12-01

    The level of hydrogen peroxide (H2O2) in plants signalizes the induction of several genes, including that of ascorbate peroxidase (APX-EC 1.11.1.11). APX isoenzymes play a central role in the elimination of intracellular H2O2 and contribute to plant responses to diverse stresses. During the infection process in Theobroma cacao by Moniliophthora perniciosa oxidative stress is generated and the APX action recruited from the plant. The present work aimed to characterize the T. cacao APX involved in the molecular interaction of T. cacao-M. perniciosa. The peroxidase activity was analyzed in protein extracts from cocoa plants infected by M. perniciosa and showed the induction of peroxidases like APX in resistant cocoa plants. The cytosolic protein of T. cacao (GenBank: ABR68691.2) was phylogenetically analyzed in relation to other peroxidases from the cocoa genome and eight genes encoding APX proteins with conserved domains were also analyzed. The cDNA from cytosolic APX was cloned in pET28a and the recombinant protein expressed and purified (rTc-cAPX). The secondary structure of the protein was analyzed by Circular Dichroism (CD) displaying high proportion of α-helices when folded. The enzymatic assay shows stable activity using ascorbate and guaiacol as an electron donor for H2O2 reduction. The pH 7.5 is the optimum for enzyme activity. Chromatographic analysis suggests that rTc-cAPX is a homodimer in solution. Results indicate that the rTc-cAPX is correctly folded, stable and biochemically active. The purified rTc-cAPX presented biotechnological potential and is adequate for future structural and functional studies. Copyright © 2013 The Authors. Published by Elsevier Masson SAS.. All rights reserved.

  7. Response to Commentary on Cheng, Broome, Feng, and Hu (2017) Leadership behaviours play a significant role in implementing evidence-based practice. Journal of Clinical Nursing, 2018;27:e1684-e1685.

    Science.gov (United States)

    Cheng, Lei; Feng, Sheng; Hu, Yan; Broome, Marion E

    2018-06-12

    Thank you for the opportunity to respond to Hu and Gifford's comments(Hu & Gifford, 2018). We appreciated their acknowledgement of our findings about the factors influencing the successful implementation of evidence-based practice (EBP). The authors described leadership behaviors as having a significant role in implementing evidence-based practice. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  8. Una Escoba para Ana, Cien Oficios para Juan. Quinto Modulo de una Serie para Maestros de Escuela Elemental. (A Broom for Anna, A Hundred Jobs for John. Fifth Module of a Series for Elementary School Teachers).

    Science.gov (United States)

    Molina, Carmen Eneida, Ed.; And Others

    This guide for teachers, in English and Spanish, examines the stereotyped work roles assigned to men and women. The guide examines educational materials that perpetuate these roles and presents teaching alternatives which reinforce students' self esteem and confidence. A pre-test and post-test are included to measure the user's awareness of…

  9. Efeito de nutrientes combinados com indutores de resistência na proteção contra a vassoura-de-bruxa no cacaueiro Effect of nutrients combined with inducers of resistance on the protection of cocoa seedlings against witches' broom

    Directory of Open Access Journals (Sweden)

    Iris Lettiere do Socorro Santos da Silva

    2008-02-01

    Full Text Available Na busca por novos indutores de resistência contra a vassoura-de-bruxa no cacaueiro avaliou-se o efeito de vários nutrientes, acibenzolar-S-metil (ASM e a combinação desses nutrientes com ASM. Os produtos e as misturas foram pulverizados 30 dias antes da inoculação nas mudas do clone SIC-23. Foram utilizados os produtos comerciais Supa-potássio®(silicato de potássio, Hortifós® PK (fosfito de potássio e Broadacre® Mn (sulfato de manganês, testados nas dosagens 2,5 mL; 5,0 mL; 10 mL/L de água, isoladamente ou combinados com ASM (0,2g/L. O experimento foi conduzido no delineamento de blocos ao acaso, no esquema fatorial, com quatro repetições de doze plantas/parcela. A incidência da doença foi avaliada 60 dias após a inoculação. Somente o ASM promoveu controle significativo da vassoura-de-bruxa. Os nutrientes aplicados isoladamente não apresentaram efeito na severidade da doença. Por outro lado, o efeito protetor do ASM desapareceu quando este foi misturado ao Supa-potássio®, na dose de 5 ou 10 mL/L.Aiming at improving the level of induction of resistance in cocoa, various nutrients, acibenzolar-S-methyl (ASM and their combination were tested on cocoa seedlings, clone SIC-23, 30 days before inoculation. The commercial products Supa-potássio® (potassium silicate, Hortifós® PK (potassium phosphite and Broadacre® Mn (manganese sulfate were sprayed at doses of 2.5, 5.0 mL and 10.0 mL per liter of water, combined or not, with ASM® (0.2 g/L. The experiment was set in a randomized block design, in a factorial scheme, with four replicates of twelve plants each. Disease incidence was assessed 60 days after inoculation. Only ASM promoted significant control of the disease. Nutrients alone had no effect on disease incidence. On the other hand, the protective effect of ASM disappeared when this product was mixed to Supa-potássio at 5 or 10 mL/L.

  10. 7 CFR 319.73-2 - Products prohibited importation.

    Science.gov (United States)

    2010-01-01

    ... the fungus Hemileia vastatrix (Berkely and Broome), which causes an injurious rust disease, the..., seeds of all kinds when in pulp, including coffee berries or fruits, are prohibited importation into all...

  11. impact of some climatic and phenological parameters on the ...

    African Journals Online (AJOL)

    Prof. Adipala Ekwamu

    from cocoa and represent 30% of the working .... One of the ten best parents; very tolerant to witches' broom disease, resistant to Phytophthora, pod rot ... were estimated by visual observation from a scale ..... In memory of Dr. Jeanne Andi Kohi.

  12. New records of truffle fungi (Basidiomycetes) from Turkey

    Science.gov (United States)

    Aziz Turkoglu; Michael Angelo. Castellano

    2013-01-01

    We report the first records of 5 truffle taxa in Turkey: Gymnomyces xanthosporus (Hawker) A.H.Sm., Hymenogaster griseus Vittad., Hymenogaster olivaceous Vittad., Hymenogaster thwaitesii Berk. & Broome, and Hymenogaster vulgaris Tul. & C.Tul. We also report a new...

  13. On the Local Maxima of a Constrained Quadratic Form

    Science.gov (United States)

    Bhowmik, Jahar L.

    2006-01-01

    This note presents a brief and partial review of the work of Broom, Cannings and Vickers [1]. It also presents some simple examples of an extension of the their formalism to non-symmetric matrices. (Contains 1 figure.)

  14. Dicty_cDB: Contig-U02501-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available ) Aster yellows witches'-broom phytoplasma AYWB, co... 38 0.006 12 ( FG289263 ) 1108793295629 New World Scre...FG290297 ) 1108793315558 New World Screwworm Egg 9261 ESTs C... 44 9.4 1 ( FE7256

  15. Characterization of uptake and translocation of radioactive herbicides in a parasitic-host system

    International Nuclear Information System (INIS)

    Diaz S, Jorge; Lopez G, Francisca; Garcia T, Luis

    1999-01-01

    Uptake and translocation of [14C]-propyzamide applied to the sunflower seed by coating or soaking, of [14C]-imazapyr and [14C]-glyphosate both applied at post emergence, were studied in sunflower (Helianthus annuus L.) parasitising or not by nodding broom rape (Orobanche cumana Wallr.). Sunflower seed absorbed 9.8 and 3.4% of [14C]-propyzamide applied by coating or soaking, respectively, and less than 1% was translocated to the nodding broom rape. In sunflower plants infested and not infested with nodding broom rape, nearly 90% of [14C]-imazapyr was absorbed and 26% was translocated to the parasitic weed. Uptake of [14C]-glyphosate was similar (50%) for infested or not infested sunflower plants and only the 6% was translocated to the nodding broom rape

  16. PHYTOPHTHORA MEGAKARYA: A REVIEW ON ITS STATUS AS A ...

    African Journals Online (AJOL)

    ACSS

    2015-02-23

    Feb 23, 2015 ... broom, swollen shoot virus, vascular streak dieback, and monilia ..... evidence of alternative hosts of the pathogen. Phytophthora .... efficacy of fungicide treatment. ..... or derivatives thereof, reduced necrosis of cacao leaf discs ...

  17. evaluation of the contributions of ikere forest reserve to sustainable

    African Journals Online (AJOL)

    Tersor

    provision of food and provision of health care delivery for the rural people. This study ... stated that the traditional uses of forests are ..... ikere forest reserve and marketing ... Beverage, for cooking, broom for .... conservation strategies for non-.

  18. A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium

    OpenAIRE

    Hoshi, Ayaka; Oshima, Kenro; Kakizawa, Shigeyuki; Ishii, Yoshiko; Ozeki, Johji; Hashimoto, Masayoshi; Komatsu, Ken; Kagiwada, Satoshi; Yamaji, Yasuyuki; Namba, Shigetou

    2009-01-01

    One of the most important themes in agricultural science is the identification of virulence factors involved in plant disease. Here, we show that a single virulence factor, tengu-su inducer (TENGU), induces witches' broom and dwarfism and is a small secreted protein of the plant-pathogenic bacterium, phytoplasma. When tengu was expressed in Nicotiana benthamiana plants, these plants showed symptoms of witches' broom and dwarfism, which are typical of phytoplasma infection. Transgenic Arabidop...

  19. Velocity estimation of an airplane through a single satellite image

    Institute of Scientific and Technical Information of China (English)

    Zhuxin Zhao; Gongjian Wen; Bingwei Hui; Deren Li

    2012-01-01

    The motion information of a moving target can be recorded in a single image by a push-broom satellite. A push-broom satellite image is composed of many image lines sensed at different time instants. A method to estimate the velocity of a flying airplane from a single image based on the imagery model of the linear push-broom sensor is proposed. Some key points on the high-resolution image of the plane are chosen to determine the velocity (speed and direction). The performance of the method is tested and verified by experiments using a WorldView-1 image.%The motion information of a moving target can be recorded in a single image by a push-broom satellite.A push-broom satellite image is composed of many image lines sensed at different time instants.A method to estimate the velocity of a flying airplane from a single image based on the imagery model of the linear push-broom sensor is proposed.Some key points on the high-resolution image of the plane are chosen to determine the velocity (speed and direction).The performance of the method is tested and verified by experiments using a WorldView-1 image.

  20. Aphandra natalia(Arecaceae – a little known source of piassaba fibers from the western Amazon

    Directory of Open Access Journals (Sweden)

    Mette Kronborg

    2014-03-01

    Full Text Available Aphandra natalia(Balslev & Henderson Barfod is a multipurpose palm that is exploited both commercially and for subsistence purposes. Its fibers are important in Peruvian and Ecuadorean broom industries and support many people economically. In Brazil, it is found in the western part of Acre, where it is the main source for a local broom market. Data from fieldwork in Peru (2007 suggests that the variation in gross profit per kilogram of fiber is considerable among the different segments in the broom industry. Harvesters and distributors earn negligible amounts of money whereas manufacturers reap of the major part of the earnings. Fiber extraction appears to be sustainable in Ecuador and in some parts of Peru, whereas in other parts of Peru unsustainable harvest occurs, involving felling of entire palm trees for the harvest of fibers. The same destructive extraction method is used in Brazil, where the palm is becoming rare in its natural distribution area.

  1. Strategi Public Relations Hotel dalam Membentuk Citra Objek Wisata

    Directory of Open Access Journals (Sweden)

    Poppy Ruliana

    2015-01-01

    Full Text Available The purpose of this study is to determine the communication strategy of marketing through public relations approach between hotel and community. The model used in this study is a Public Relations strategy planning model of Cutlip, Center & Broom (2009. Method used in this research is descriptive qualitative approach. Data were collected by doing participatory observation, in-depth interviews, documentary studies and triangulation. Data wrere analyzed through the stages of data reduction, data presentation, conclusion and verification. Result shows that the PR strategy planning model proposed by Cutlip, Center & Broom can support this research.

  2. Chapter 5. Damage, effects, and importance of dwarf mistletoes

    Science.gov (United States)

    B. W. Geils; F. G. Hawksworth

    2002-01-01

    All dwarf mistletoes are parasites that extract water, nutrients, and carbohydrates from the infected host; they are also pathogens that alter host physiology and morphology (Gill and Hawksworth 1961, Hawksworth and Wiens 1996). Disease or direct effects are reductions in diameter and height increment, survival, reproduction, and quality; witches’ brooms are formed in...

  3. Association mapping of fruit, seed and disease resistance traits in Theobroma cacao L

    Science.gov (United States)

    An association mapping approach was employed to find markers for color, size, girth and mass of fruits; seed number and butterfat content; and resistance to black pod and witches’ broom diseases in cacao (Theobroma cacao L.). Ninety-five microsatellites (SSRs) and 775 single nucleotide polymorphisms...

  4. Breeding for disease resistance in cacao

    Science.gov (United States)

    Cacao production must increase in order to meet the projected rise in the demand for chocolate. Approximately one-third of global production is lost annually to diseases and insects. Four diseases account for the greatest losses worldwide: black pod, caused by four Phytophthora spp; witches’ broom...

  5. Cacao diseases: A history of old enemies and new encounters

    Science.gov (United States)

    This book reviews the current knowledge of cacao pathogens and their management methods. Topics discussed include the history, biology, and genetic diversity of Moniliophthora (causing witches’ broom and frosty pod rot) and Phytophthora species (causing black pod rot) that cause diseases resulting i...

  6. 77 FR 14584 - Notice of Passenger Facility Charge (PFC) Approvals and Disapprovals

    Science.gov (United States)

    2012-03-12

    .... Insulation of hangars 661, 662, 663, 665, and 666. Hangar tail dock; 665 electrical/insulation; water study. Electrical/insulation of hangars 661, 663, 664, 666, and 667. Hangar improvements: hangars 664, 665, 667, and... vehicle. Plow truck with broom and deicing equipment. Sand truck replacement. Airfield loader. Fire truck...

  7. Toward The identification Of candidate genes involved in black pod disease resistance in Theobroma cacao L.

    Science.gov (United States)

    Increasing yield, quality and disease resistance are important objectives for cacao breeding programs. Some of the diseases, such as black pod rot (Phytophtora spp), frosty pod (Moniliophthora roreri) and witches’ broom (M. perniciosa), produce significant losses in all or in some of the various pro...

  8. COMPARATIVE GENOME ANALYSES OF MONILIOPHTHORA PERNICIOSA AND MONILIOPHTHORA RORERI: TWO CLOSELY RELATED PHYTOPATHOGENIC BASIDIOMYCETES THAT CAUSE DISTINCTLY DIFFERENT DISEASES OF THEOBROMA CACAO

    Science.gov (United States)

    Theobroma cacao (cacao), the source of chocolate, is a tropical understory tree. Fungal diseases such as Witches’ Broom Disease (WBD) and Frosty Pod Rot Disease (FPRD) of cacao have devastated cacao production in much of the Western Hemisphere and are threats to the main cacao producing regions in A...

  9. 'Candidatus Phytoplasma sudamericanum' a novel taxon from diseased passion fruit (Passiflora edulis f. flavicarpa Deg.)

    Science.gov (United States)

    Symptoms of abnormal proliferation of shoots resulting in formation of witches’ broom growths were observed in diseased plants of passion fruit (Passiflora edulis f. flavicarpa Deg.) in Brazil. RFLP analysis of 16S rRNA gene sequences amplified in polymerase chain reactions containing template DNAs...

  10. Lead poisoning in shooting-range workers in Gauteng Province ...

    African Journals Online (AJOL)

    Results. Case 1. A 63-year-old woman living in an informal settlement on the ... using a dry duster, dry broom and ordinary domestic vacuum cleaner, and was ... removal from his duties or workplace in terms of lead regulations promulgated ...

  11. Evidence for the role of an invasive weed in widespread occurrence of phytoplasmal diseases in diverse vegetable crops: implications from lineage-specific molecular markers

    Science.gov (United States)

    During the period from 2011 to 2013, several plant diseases repeatedly occurred in vegetable crops grown in Yuanmou County, Yunnan Province, China. Affected plants included cowpea, sword bean, string bean, tomato, lettuce, and water spinach. The diseased plants exhibited symptoms of witches’-broom...

  12. Use of quantitative real time PCR for a genome-wide study of AYWB phytoplasma gene expression in plant and insect hosts

    DEFF Research Database (Denmark)

    Makarova, Olga; MacLean, Allyson M.; Hogenhout, Saskia A.

    2011-01-01

    this technique for reliable gene expression quantification of phytoplasmas on a large scale. In our experimental setup, 242 genes of aster yellows phytoplasma strain witches' broom (AY-WB) were tested for differences in expression in plant and insect host environments, and were shown to be predominantly...

  13. Protective effect and expression of defense-related ESTs induced by ...

    African Journals Online (AJOL)

    Witches' broom disease (WBD), caused by the fungus Moniliophthora perniciosa, is one of the main diseases in cocoa (Theobroma cacao) and has caused severe economic losses. Integrated disease management has been the focus for its control and therefore, the identification of new inducers of plant resistance is ...

  14. Field Report : Anna Plains and Roebuck Bay Benthic Invertebrate Mapping 2016

    NARCIS (Netherlands)

    Piersma, Theunis; Pearson, Grant B.; Lavaleye, Marc S. S.; Hickey, Robert; Rogers, Danny; Holthuijsen, Sander; Estrella, Sora-Marin; de Goeij, Petra; Findlay, Naomi; Storey, Andrew W.

    2016-01-01

    This project has been funded by the Department of Parks and Wildlife partnership with BHP Billiton “Eighty Mile Beach and Walyarta Conservation Program”, with in-kind support from NIOZ and Wetland Research & Management This report was produced at the Broome Bird Observatory in late October 2016.

  15. 77 FR 54331 - Endangered and Threatened Wildlife and Plants; 12-Month Finding on a Petition To List the Mardon...

    Science.gov (United States)

    2012-09-04

    ... habitat requirements include food resources for adults (flower nectar), larval host plants (grasses and... strongly preferred as nectar sources, and Scot's broom is strongly avoided (Hays et al. 2000, p. 14...) are also reported as nectar sources from this region (Beyer and Black 2007, p. 15; Potter and...

  16. Gatherers, practices, and livelihodd roles of non-timber forest products

    Science.gov (United States)

    Marla R. Emery; Marla R. Emery

    2001-01-01

    Gathering plant material for food, medicine, and utilitarian items was the original relationship between human beings and forests. Even today, people throughout the world turn to forests and associated open lands to feed and heal themselves and find materials for things such as baskets and brooms.

  17. Postimehe fotograaf võitis konkursi "Eesti foto 2004" / Neeme Korv

    Index Scriptorium Estoniae

    Korv, Neeme, 1974-

    2004-01-01

    Pärnu Uue Kunsti Muuseumi ja fotoajakirja "Cheese" fotokonkursil osales 67 fotograafi. Grand prix' võitis Ove Maidla broomõlitehnikas fotodega, millel kujutatakse maastikke, aega ja inimesi. Järgnesid Kristo Rihm, Anu Vahtra ja Märten Kross. Parim noor fotograaf oli Laura Nõmmik

  18. Defense Integrated Materiel Management Manual for Consumable Items

    Science.gov (United States)

    1992-01-01

    GSA 7830 Recreational and Gymnastic Equipment GSA A-1-14 DoD 4140.26-K 7910 Floor Polishers and Vacuum Cleaning Equipment GSA 7920 Brooms, Brushes, Mops... Artists ’ Brushes GSA 8030 Preservative and Sealing Compounds GSA 8040 Adhesives GSA 8105 Bags and Sacks GSA 8110 Drums and Cans DGSC 8115 Boxes, Cartons

  19. Comparative Measurement of Stream Flow in the Ethiope River for ...

    African Journals Online (AJOL)

    This study investigates comparative measurement of stream flow in the Ethiope River for small hydropower development. Two methods – the Float and Current Meter or Bridge Broom Methods were investigated and values compared to determine best method for optimal power generation. Depth and width measurements ...

  20. Intertidal sediments and benthic animals of Roebuck Bay, Western Australia

    NARCIS (Netherlands)

    Pepping, M.; Piersma, T.; Pearson, G.; Lavaleye, M.

    1999-01-01

    Roebuck Bay near Broome (NW Australia) is with itsextensive tidal flats one of the foremost internationallyimportant sites for shorebirds in the Asia-Pacificflyway system. It is home to 150,000 shorebirds (or‘waders’) in the nonbreeding season, which suggeststhat the intertidal flats of the bay have

  1. Trees and logs important to wildlife in the interior Columbia River basin.

    Science.gov (United States)

    Evelyn L. Bull; Catherine G. Parks; Torolf R. Torgersen

    1997-01-01

    This publication provides qualitative and quantitative information on five distinct structures: living trees with decayed parts, trees with hollow chambers, trees with brooms, dead trees, and logs. Information is provided on the value of these structures to wildlife, the decay or infection processes involved in the formation of these structures, and the principles to...

  2. Guide to Employing Renewable Energy and Energy Efficient Technologies

    Science.gov (United States)

    2012-09-01

    is the same regardless of its chemical makeup . NOTE A car battery is not considered deep cycle. It is designed to be used in short bursts of...any abrasions  Brush off panels (a broom or dry rag will work) every three days  Wipe down panels once every two weeks  do not use chemicals

  3. Assessing the Likelihood of Gene Flow From Sugarcane (Saccharum Hybrids to Wild Relatives in South Africa

    Directory of Open Access Journals (Sweden)

    Sandy J. Snyman

    2018-06-01

    Full Text Available Pre-commercialization studies on environmental biosafety of genetically modified (GM crops are necessary to evaluate the potential for sexual hybridization with related plant species that occur in the release area. The aim of the study was a preliminary assessment of factors that may contribute to gene flow from sugarcane (Saccharum hybrids to indigenous relatives in the sugarcane production regions of Mpumalanga and KwaZulu-Natal provinces, South Africa. In the first instance, an assessment of Saccharum wild relatives was conducted based on existing phylogenies and literature surveys. The prevalence, spatial overlap, proximity, distribution potential, and flowering times of wild relatives in sugarcane production regions based on the above, and on herbaria records and field surveys were conducted for Imperata, Sorghum, Cleistachne, and Miscanthidium species. Eleven species were selected for spatial analyses based on their presence within the sugarcane cultivation region: four species in the Saccharinae and seven in the Sorghinae. Secondly, fragments of the nuclear internal transcribed spacer (ITS regions of the 5.8s ribosomal gene and two chloroplast genes, ribulose-bisphosphate carboxylase (rbcL, and maturase K (matK were sequenced or assembled from short read data to confirm relatedness between Saccharum hybrids and its wild relatives. Phylogenetic analyses of the ITS cassette showed that the closest wild relative species to commercial sugarcane were Miscanthidium capense, Miscanthidium junceum, and Narenga porphyrocoma. Sorghum was found to be more distantly related to Saccharum than previously described. Based on the phylogeny described in our study, the only species to highlight in terms of evolutionary divergence times from Saccharum are those within the genus Miscanthidium, most especially M. capense, and M. junceum which are only 3 million years divergent from Saccharum. Field assessment of pollen viability of 13 commercial sugarcane

  4. Assessing the Likelihood of Gene Flow From Sugarcane (Saccharum Hybrids) to Wild Relatives in South Africa

    Science.gov (United States)

    Snyman, Sandy J.; Komape, Dennis M.; Khanyi, Hlobisile; van den Berg, Johnnie; Cilliers, Dirk; Lloyd Evans, Dyfed; Barnard, Sandra; Siebert, Stefan J.

    2018-01-01

    Pre-commercialization studies on environmental biosafety of genetically modified (GM) crops are necessary to evaluate the potential for sexual hybridization with related plant species that occur in the release area. The aim of the study was a preliminary assessment of factors that may contribute to gene flow from sugarcane (Saccharum hybrids) to indigenous relatives in the sugarcane production regions of Mpumalanga and KwaZulu-Natal provinces, South Africa. In the first instance, an assessment of Saccharum wild relatives was conducted based on existing phylogenies and literature surveys. The prevalence, spatial overlap, proximity, distribution potential, and flowering times of wild relatives in sugarcane production regions based on the above, and on herbaria records and field surveys were conducted for Imperata, Sorghum, Cleistachne, and Miscanthidium species. Eleven species were selected for spatial analyses based on their presence within the sugarcane cultivation region: four species in the Saccharinae and seven in the Sorghinae. Secondly, fragments of the nuclear internal transcribed spacer (ITS) regions of the 5.8s ribosomal gene and two chloroplast genes, ribulose-bisphosphate carboxylase (rbcL), and maturase K (matK) were sequenced or assembled from short read data to confirm relatedness between Saccharum hybrids and its wild relatives. Phylogenetic analyses of the ITS cassette showed that the closest wild relative species to commercial sugarcane were Miscanthidium capense, Miscanthidium junceum, and Narenga porphyrocoma. Sorghum was found to be more distantly related to Saccharum than previously described. Based on the phylogeny described in our study, the only species to highlight in terms of evolutionary divergence times from Saccharum are those within the genus Miscanthidium, most especially M. capense, and M. junceum which are only 3 million years divergent from Saccharum. Field assessment of pollen viability of 13 commercial sugarcane cultivars using

  5. Cacao breeding in Bahia, Brazil - strategies and results

    Directory of Open Access Journals (Sweden)

    Uilson Vanderlei Lopes

    2011-01-01

    Full Text Available Cacao was introduced in Bahia in 1756, becoming later the largest producer state in the country. In order to supportthe planting of cacao in the region, a breeding program was established by CEPEC at the beginning of the 1970s. For a long time,the program consisted in testing new hybrids (full-sibs and releasing a mixture of the best ones to farmers. Lately, particularly afterthe witches´ broom arrival in the region, in 1989, recurrent breeding strategies were implemented, aiming mainly the developmentof clones. From 1993 to 2010, more than 500 progenies, accumulating 30 thousand trees, were developed by crossing many parentswith resistance to witches´ broom, high yield and other traits. In this period, more than 500 clones were put in trials and 39 clonesand 3 hybrids were released to farmers. In this paper the strategies and results achieved by the program are reviewed. Overall theprogram has good interface with pathology and genomic programs.

  6. Partial removal of correlated noise in thermal imagery

    International Nuclear Information System (INIS)

    Borel, C.C.; Cooke, B.J.; Laubscher, B.E.

    1996-01-01

    Correlated noise occurs in many imaging systems such as scanners and push-broom imagers. The sources of correlated noise can be from the detectors, pre-amplifiers and sampling circuits. Correlated noise appears as streaking along the scan direction of a scanner or in the along track direction of a push-broom imager. We have developed algorithms to simulate correlated noise and pre-filter to reduce the amount of streaking while not destroying the scene content. The pre- filter in the Fourier domain consists of the product of two filters. One filter models the correlated noise spectrum, the other is a windowing function e.g. Gaussian or Hanning window with variable width to block high frequency noise away from the origin of the Fourier Transform of the image data. We have optimized the filter parameters for various scenes and find improvements of the RMS error of the original minus the pre-filtered noisy image

  7. A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium

    Science.gov (United States)

    Hoshi, Ayaka; Oshima, Kenro; Kakizawa, Shigeyuki; Ishii, Yoshiko; Ozeki, Johji; Hashimoto, Masayoshi; Komatsu, Ken; Kagiwada, Satoshi; Yamaji, Yasuyuki; Namba, Shigetou

    2009-01-01

    One of the most important themes in agricultural science is the identification of virulence factors involved in plant disease. Here, we show that a single virulence factor, tengu-su inducer (TENGU), induces witches' broom and dwarfism and is a small secreted protein of the plant-pathogenic bacterium, phytoplasma. When tengu was expressed in Nicotiana benthamiana plants, these plants showed symptoms of witches' broom and dwarfism, which are typical of phytoplasma infection. Transgenic Arabidopsis thaliana lines expressing tengu exhibited similar symptoms, confirming the effects of tengu expression on plants. Although the localization of phytoplasma was restricted to the phloem, TENGU protein was detected in apical buds by immunohistochemical analysis, suggesting that TENGU was transported from the phloem to other cells. Microarray analyses showed that auxin-responsive genes were significantly down-regulated in the tengu-transgenic plants compared with GUS-transgenic control plants. These results suggest that TENGU inhibits auxin-related pathways, thereby affecting plant development. PMID:19329488

  8. Development of Personalized Cancer Therapy for Men with Advanced Prostate Cancer

    Science.gov (United States)

    2015-10-01

    MD Anderson. Fusion analysis of the first 19 cases demonstrates 10 cases are ETS fusion positive, while 9 cases are ETS fusion negative. Notably...Foundation Grants Officer: Jane Zuber, Director, Contracts & Grants, Texas A&M Univ. System 400 Harvey Mitchell Pkwy South, Suite 300 College Station, TX...prostate cancer PDXs for expression of targets of interest to company. 18 ARAUJO, John None BROOM, Bradley ACTIVE Bioinformatics Gift ( Weinstein

  9. Prediction of Cacao (Theobroma cacao) Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection.

    Science.gov (United States)

    McElroy, Michel S; Navarro, Alberto J R; Mustiga, Guiliana; Stack, Conrad; Gezan, Salvador; Peña, Geover; Sarabia, Widem; Saquicela, Diego; Sotomayor, Ignacio; Douglas, Gavin M; Migicovsky, Zoë; Amores, Freddy; Tarqui, Omar; Myles, Sean; Motamayor, Juan C

    2018-01-01

    Cacao ( Theobroma cacao ) is a globally important crop, and its yield is severely restricted by disease. Two of the most damaging diseases, witches' broom disease (WBD) and frosty pod rot disease (FPRD), are caused by a pair of related fungi: Moniliophthora perniciosa and Moniliophthora roreri , respectively. Resistant cultivars are the most effective long-term strategy to address Moniliophthora diseases, but efficiently generating resistant and productive new cultivars will require robust methods for screening germplasm before field testing. Marker-assisted selection (MAS) and genomic selection (GS) provide two potential avenues for predicting the performance of new genotypes, potentially increasing the selection gain per unit time. To test the effectiveness of these two approaches, we performed a genome-wide association study (GWAS) and GS on three related populations of cacao in Ecuador genotyped with a 15K single nucleotide polymorphism (SNP) microarray for three measures of WBD infection (vegetative broom, cushion broom, and chirimoya pod), one of FPRD (monilia pod) and two productivity traits (total fresh weight of pods and % healthy pods produced). GWAS yielded several SNPs associated with disease resistance in each population, but none were significantly correlated with the same trait in other populations. Genomic selection, using one population as a training set to estimate the phenotypes of the remaining two (composed of different families), varied among traits, from a mean prediction accuracy of 0.46 (vegetative broom) to 0.15 (monilia pod), and varied between training populations. Simulations demonstrated that selecting seedlings using GWAS markers alone generates no improvement over selecting at random, but that GS improves the selection process significantly. Our results suggest that the GWAS markers discovered here are not sufficiently predictive across diverse germplasm to be useful for MAS, but that using all markers in a GS framework holds

  10. Moniliophthora perniciosa Necrosis- and Ethylene-Inducing Protein 2 (MpNep2) as a Metastable Dimer in Solution: Structural and Functional Implications

    OpenAIRE

    de Oliveira, Guilherme A. P.; Pereira, Elen G.; Dias, Cristiano V.; Souza, Theo L. F.; Ferretti, Giulia D. S.; Cordeiro, Yraima; Camillo, Luciana R.; Cascardo, Júlio; Almeida, Fabio C.; Valente, Ana Paula; Silva, Jerson L.

    2012-01-01

    Understanding how Nep-like proteins (NLPs) behave during the cell cycle and disease progression of plant pathogenic oomycetes, fungi and bacteria is crucial in light of compelling evidence that these proteins play a role in Witches` Broom Disease (WBD) of Theobroma cacao, one of the most important phytopathological problems to afflict the Southern Hemisphere. The crystal structure of MpNep2, a member of the NLP family and the causal agent of WBD, revealed the key elements for its activity. Th...

  11. Design of a wireless forensic readiness model (WFRM)

    CSIR Research Space (South Africa)

    Ngobeni, SJ

    2009-07-01

    Full Text Available ] Solomon, M.G., Barrett, D. & Broom, N. (2005). Computer forensics, The Best First Step towards a Career in Computer Forensics. SYBEX Inc, San Francisco, London. [13] RICCA Act, (22 January 2002). Regulation of Interception of Communications...: http://www.guidancesoftware.com/ediscovery/index.aspx, (Accessed 05 April 2009). [15] Forensic Toolkit. (10 July 2008). Access Data, A pioneer in digital investigations since 1987. Available from: http...

  12. IEEE Particle Accelerator Conference on Accelerator Science and Technology Held in San Francisco, California on 6-9 May 1991. Volume 5

    Science.gov (United States)

    1991-05-01

    Progress on bunch lengthening at the NSLS VUV ring - R. Biscardi, W. Broome, S. Buda, J. Keane, G. Ramirez , J. Wachtel, and J. M . Wang...applied to KAON - George A. Ludgate, Edwin A. Osberg, and Don A. Dohan .................................................................... 1350...Wiggler Magnert foir DELTAI3.0O .. . . . . . . ... . . ... . . . . . . r-iPeriodlenth’ 95 CMj !I# dn~’ Centr.l minetk l id 5.5?’ D.. rua ~q ppobt1 6 20

  13. Forest insects and diseases in Fundy National Park in 1994. Technical note No. 310

    Energy Technology Data Exchange (ETDEWEB)

    Meikle, O.A.

    1995-11-01

    Personnel of the Forest Insect and Disease Survey regularly survey national parks for forest insect and disease conditions. This document discusses briefly some of the conditions encountered in Fundy National Park during the year, including insects and diseases found throughout the Park that are likely to recur: Gypsy moth, winter drying, sirococcus shoot blight, forest tent caterpillar, balsam fir needle cast and yellow witches` broom, birch decline, and hemlock looper.

  14. Forest insects and diseases in Fundy National Park in 1993. Technical note No. 296

    Energy Technology Data Exchange (ETDEWEB)

    Meikle, O.A.

    1994-01-01

    Personnel of the Forest Insect and Disease Survey regularly survey national parks for forest insect and disease conditions. This document discusses briefly some of the conditions encountered in Fundy National Park during the year, including insects and diseases found throughout the Park that are likely to recur: Gypsy moth, winter drying, sirococcus shoot blight, forest tent caterpillar, balsam fir needle cast and yellow witches' broom, birch decline, and hemlock looper.

  15. Prediction of Cacao (Theobroma cacao Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection

    Directory of Open Access Journals (Sweden)

    Michel S. McElroy

    2018-03-01

    Full Text Available Cacao (Theobroma cacao is a globally important crop, and its yield is severely restricted by disease. Two of the most damaging diseases, witches’ broom disease (WBD and frosty pod rot disease (FPRD, are caused by a pair of related fungi: Moniliophthora perniciosa and Moniliophthora roreri, respectively. Resistant cultivars are the most effective long-term strategy to address Moniliophthora diseases, but efficiently generating resistant and productive new cultivars will require robust methods for screening germplasm before field testing. Marker-assisted selection (MAS and genomic selection (GS provide two potential avenues for predicting the performance of new genotypes, potentially increasing the selection gain per unit time. To test the effectiveness of these two approaches, we performed a genome-wide association study (GWAS and GS on three related populations of cacao in Ecuador genotyped with a 15K single nucleotide polymorphism (SNP microarray for three measures of WBD infection (vegetative broom, cushion broom, and chirimoya pod, one of FPRD (monilia pod and two productivity traits (total fresh weight of pods and % healthy pods produced. GWAS yielded several SNPs associated with disease resistance in each population, but none were significantly correlated with the same trait in other populations. Genomic selection, using one population as a training set to estimate the phenotypes of the remaining two (composed of different families, varied among traits, from a mean prediction accuracy of 0.46 (vegetative broom to 0.15 (monilia pod, and varied between training populations. Simulations demonstrated that selecting seedlings using GWAS markers alone generates no improvement over selecting at random, but that GS improves the selection process significantly. Our results suggest that the GWAS markers discovered here are not sufficiently predictive across diverse germplasm to be useful for MAS, but that using all markers in a GS framework holds

  16. Effectiveness of long-term (twelve months) nonsurgical weight loss interventions for obese women with polycystic ovary syndrome: a systematic review

    OpenAIRE

    Nicholson, Fiona; Rolland, Catherine; Broom, John; Love, John

    2010-01-01

    Fiona Nicholson1, Catherine Rolland1, John Broom1, John Love21Centre for Obesity Research and Epidemiology, Robert Gordon University, Aberdeen, Scotland; 2School of Applied Social Studies, Faculty of Health and Social Care, The Robert Gordon University, Aberdeen, ScotlandAbstract: Polycystic ovary syndrome (PCOS) affects 2%–26% of women of reproductive age and is often accompanied by obesity. Modest weight loss reduces health risks and ameliorates effects of the syndrome. Weight los...

  17. Weight loss for women with and without polycystic ovary syndrome following a very low-calorie diet in a community-based setting with trained facilitators for 12 weeks

    OpenAIRE

    Nikokavoura EA; Johnston KL; Broom J; Wrieden WL; Roll; C

    2015-01-01

    Efsevia A Nikokavoura,1 Kelly L Johnston,2 John Broom,1 Wendy L Wrieden,1 Catherine Rolland1 1Centre for Obesity Research and Epidemiology, Institute for Health & Wellbeing Research (IHWR), Robert Gordon University, Aberdeen, 2LighterLife UK Limited, Harlow, Essex, UK Background: Polycystic ovary syndrome (PCOS) affects between 2% and 26% of reproductive-age women in the UK, and accounts for up to 75% of anovulatory infertility. The major symptoms include ovarian disruption, hyperandroge...

  18. Weight loss for women with and without polycystic ovary syndrome following a very low-calorie diet in a community-based setting with trained facilitators for 12 weeks

    OpenAIRE

    Nikokavoura, Efsevia Anastasia; Johnston,Kelly; Broom,Iain; Wrieden,Wendy; Rolland,Catherine

    2015-01-01

    Efsevia A Nikokavoura,1 Kelly L Johnston,2 John Broom,1 Wendy L Wrieden,1 Catherine Rolland1 1Centre for Obesity Research and Epidemiology, Institute for Health & Wellbeing Research (IHWR), Robert Gordon University, Aberdeen, 2LighterLife UK Limited, Harlow, Essex, UK Background: Polycystic ovary syndrome (PCOS) affects between 2% and 26% of reproductive-age women in the UK, and accounts for up to 75% of anovulatory infertility. The major symptoms include ovarian disruption, hyperand...

  19. Biological restoration of major transportation facilities domestic demonstration and application project (DDAP): technology development at Sandia National Laboratories.

    Energy Technology Data Exchange (ETDEWEB)

    Ramsey, James L., Jr. (.,; .); Melton, Brad; Finley, Patrick; Brockman, John; Peyton, Chad E.; Tucker, Mark David; Einfeld, Wayne; Griffith, Richard O.; Brown, Gary Stephen; Lucero, Daniel A.; Betty, Rita G.; McKenna, Sean Andrew; Knowlton, Robert G.; Ho, Pauline

    2006-06-01

    The Bio-Restoration of Major Transportation Facilities Domestic Demonstration and Application Program (DDAP) is a designed to accelerate the restoration of transportation nodes following an attack with a biological warfare agent. This report documents the technology development work done at SNL for this DDAP, which include development of the BROOM tool, an investigation of surface sample collection efficiency, and a flow cytometry study of chlorine dioxide effects on Bacillus anthracis spore viability.

  20. Soil, water and nutrient conservation in mountain farming systems: case-study from the Sikkim Himalaya.

    Science.gov (United States)

    Sharma, E; Rai, S C; Sharma, R

    2001-02-01

    The Khanikhola watershed in Sikkim is agrarian with about 50% area under rain-fed agriculture representing the conditions of the middle mountains all over the Himalaya. The study was conducted to assess overland flow, soil loss and subsequent nutrient losses from different land uses in the watershed, and identify biotechnological inputs for management of mountain farming systems. Overland flow, soil and nutrient losses were very high from open agricultural (cropped) fields compared to other land uses, and more than 72% of nutrient losses were attributable to agriculture land use. Forests and large cardamom agroforestry conserved more soil compared to other land uses. Interventions, like cultivation of broom grass upon terrace risers, N2-fixing Albizia trees for maintenance of soil fertility and plantation of horticulture trees, have reduced the soil loss (by 22%). Soil and water conservation values (> 80%) of both large cardamom and broom grass were higher compared to other crops. Use of N2-fixing Albizia tree in large cardamom agroforestry and croplands contributed to soil fertility, and increased productivity and yield. Bio-composting of farm resources ensured increase in nutrient availability specially phosphorus in cropped areas. Agricultural practices in mountain areas should be strengthened with more agroforestry components, and cash crops like large cardamom and broom grass in agroforestry provide high economic return and are hydroecologically sustainable.

  1. Advance and recommendations for the control of illnesses in cocoa

    International Nuclear Information System (INIS)

    Rondon Carvajal, J.G.

    1989-01-01

    Among the diverse problems phyto sanitary that affect the production of cocoa in Colombia the moniliasis they stand out (Moniliophthora roreri) and witch's broom (pernicious Crinipellis). It is considered that for these illnesses the country loses but of 40 percent of the production, equivalent to some 16.000 tons of commercial grain per year. The ICA and their investigation program in cocoa have come developing in the CRI Tulenapa, Uraba, basic investigations and applied on the biology and dynamics of these pathogens, the physiology of the cultivation and the development of control programs, works that have allowed to define a handling system that consists on establishing defined times of removal of sick material for monilia and witch's broom through the year. With ends of technical and economic evaluation of this system, in 1981 they settled down in Tulenapa a demonstrative parcel of 1 there is of cocoa. The results of the rehearsal showed that the application of this system reduced the incidence of monilia of 65 percent in 1981 to 10 percent in 1985; equally, the brooms/tree/year index lowered of but of 100 at 19 in the same period. The yields that were of 280 kg/ha, increased to 422,942 and 657 kg/ha, respectively, between 1982 and 1985. Of the results of the study it comes off that this control system can be considered like model for the Uraba area some recommendations they are formulated to apply it in other regions, in accordance with its ecological conditions

  2. EVALUATION AND ANALYSIS OF A PARAMETRIC APPROACH FOR SIMULTANEOUS SPACE RESECTION-INTERSECTION OF HIGH RESOLUTION SATELLITE IMAGES WITHOUT USING GROUND CONTROL POINTS

    Directory of Open Access Journals (Sweden)

    A. Azizi

    2013-09-01

    Full Text Available This paper initially proves mathematically that the solution of the relative orientation of the push broom stereo images leads to a set of ill-posed system of observation equations which means no relative orientation for this kind of imageries is possible. It is then demonstrated that the only way to bypass the inherent rank deficiency in the system of the relative orientation equations, is to incorporate fictitious data as known values into the equations. The proposed solutions given so far for the relative orientation of the push-broom images use a physical collinearity model and incorporate the so-called Virtual Ground Control points (VCPs to bypass the ill-conditioning problem. The main objective of this paper is to replace the physical collinearity model with the 3D-affine transformation and use fictitious height information for the solution of the relative orientation of the push-broom images. The main advantage gained by this replacement model is its independence with respect to the sensor's interior orientation parameters and also the simplicity of its functional model. Cartosat-1 P5 stereo images over a highly mountainous terrain are used to evaluate the potential of the 3D-affine for the solution of the aforementioned problem. The tests conducted in this research work indicate that the 3D-affine model with fictitious information can eliminate the ill-posed problem associated with the relative orientation of the push-broom images. However, the main disadvantage of the 3D-affine model is the fact that it imposes certain level of model deformation into the generated relative DEM. This paper also demonstrates the influence of the inclusion of the perspective-to-parallel transformation coefficient into the 3D-affine resection-intersection equations. The main contribution of this paper is, therefore, the solution of the relative orientation of the push-broom images with the 3D-affine model using fictitious information. The superimposed

  3. PUSHBROOM HYPERSPECTRAL IMAGING FROM AN UNMANNED AIRCRAFT SYSTEM (UAS) – GEOMETRIC PROCESSINGWORKFLOW AND ACCURACY ASSESSMENT

    KAUST Repository

    Turner, D.

    2017-08-31

    In this study, we assess two push broom hyperspectral sensors as carried by small (10-15 kg) multi-rotor Unmanned Aircraft Systems (UAS). We used a Headwall Photonics micro-Hyperspec push broom sensor with 324 spectral bands (4-5 nm FWHM) and a Headwall Photonics nano-Hyperspec sensor with 270 spectral bands (6 nm FWHM) both in the VNIR spectral range (400-1000 nm). A gimbal was used to stabilise the sensors in relation to the aircraft flight dynamics, and for the micro-Hyperspec a tightly coupled dual frequency Global Navigation Satellite System (GNSS) receiver, an Inertial Measurement Unit (IMU), and Machine Vision Camera (MVC) were used for attitude and position determination. For the nano-Hyperspec, a navigation grade GNSS system and IMU provided position and attitude data. This study presents the geometric results of one flight over a grass oval on which a dense Ground Control Point (GCP) network was deployed. The aim being to ascertain the geometric accuracy achievable with the system. Using the PARGE software package (ReSe - Remote Sensing Applications) we ortho-rectify the push broom hyperspectral image strips and then quantify the accuracy of the ortho-rectification by using the GCPs as check points. The orientation (roll, pitch, and yaw) of the sensor is measured by the IMU. Alternatively imagery from a MVC running at 15 Hz, with accurate camera position data can be processed with Structure from Motion (SfM) software to obtain an estimated camera orientation. In this study, we look at which of these data sources will yield a flight strip with the highest geometric accuracy.

  4. Optical MEMS for Earth observation

    Science.gov (United States)

    Liotard, Arnaud; Viard, Thierry; Noell, Wilfried; Zamkotsian, Frédéric; Freire, Marco; Guldimann, Benedikt; Kraft, Stefan

    2017-11-01

    Due to the relatively large number of optical Earth Observation missions at ESA, this area is interesting for new space technology developments. In addition to their compactness, scalability and specific task customization, optical MEMS could generate new functions not available with current technologies and are thus candidates for the design of future space instruments. Most mature components for space applications are the digital mirror arrays, the micro-deformable mirrors, the programmable micro diffraction gratings and tiltable micromirrors. A first selection of market-pull and techno-push concepts is done. In addition, some concepts are coming from outside Earth Observation. Finally two concepts are more deeply analyzed. The first concept is a programmable slit for straylight control for space spectro-imagers. This instrument is a push-broom spectroimager for which some images cannot be exploited because of bright sources in the field-of-view. The proposed concept consists in replacing the current entrance spectrometer slit by an active row of micro-mirrors. The MEMS will permit to dynamically remove the bright sources and then to obtain a field-of-view with an optically enhanced signal-to-noise ratio. The second concept is a push-broom imager for which the acquired spectrum can be tuned by optical MEMS. This system is composed of two diffractive elements and a digital mirror array. The first diffractive element spreads the spectrum. A micromirror array is set at the location of the spectral focal plane. By putting the micro-mirrors ON or OFF, we can select parts of field-of-view or spectrum. The second diffractive element then recombines the light on a push-broom detector. Dichroics filters, strip filter, band-pass filter could be replaced by a unique instrument.

  5. Study of the adsorption of mercury (II) on lignocellulosic materials under static and dynamic conditions.

    Science.gov (United States)

    Arias Arias, Fabian E; Beneduci, Amerigo; Chidichimo, Francesco; Furia, Emilia; Straface, Salvatore

    2017-08-01

    WHO has declared mercury as one of the most dangerous pollutants for human health. Unfortunately, several cases of rivers and aquifers contaminated by mercury inevitably poses the problem on how to remediate them. Considerable efforts are being addressed to develop cost-effective methodologies, among which the use of low-cost adsorbing materials. In this paper, the adsorption performances of an alternative lignocellulosic material derived from the Spanish broom plant, are presented. This plant is widely diffused in the world and its usage for Hg(II) removal from water in real working conditions requires only minimal pretreatment steps. A thoroughly investigation on the kinetics and thermodynamics of Hg(II) adsorption on Spanish broom is presented, by using Hg(II) polluted aqueous solutions specifically prepared in order to simulate typical groundwater conditions. Several batch experiments, under static conditions, were carried out in order to evaluate the effect of pH, contact time, adsorbent dosage, initial concentration, temperature. A maximum adsorption capacity of 20 mg L -1 can be obtained at pH 5, following a pseudo second order kinetics. Moreover, adsorption experiments in dynamic conditions were carried out using Spanish broom filters. Interestingly, a systematic, unconventional double S-shape breakthrough curve was observed under different experimental conditions, revealing the occurrence of two adsorption processes with different time scales. This behavior has been fitted by a bimodal Thomas model which, unlike the single Thomas fitting, gives satisfactory results with the introduction of a new parameter related to the fraction of surface active sites involved in the adsorption processes. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. RIGOROUS PHOTOGRAMMETRIC PROCESSING OF CHANG'E-1 AND CHANG'E-2 STEREO IMAGERY FOR LUNAR TOPOGRAPHIC MAPPING

    OpenAIRE

    K. Di; Y. Liu; B. Liu; M. Peng

    2012-01-01

    Chang'E-1(CE-1) and Chang'E-2(CE-2) are the two lunar orbiters of China's lunar exploration program. Topographic mapping using CE-1 and CE-2 images is of great importance for scientific research as well as for preparation of landing and surface operation of Chang'E-3 lunar rover. In this research, we developed rigorous sensor models of CE-1 and CE-2 CCD cameras based on push-broom imaging principle with interior and exterior orientation parameters. Based on the rigorous sensor model, the 3D c...

  7. The Eccentric-distance Sum of Some Graphs

    OpenAIRE

    P, Padmapriya; Mathad, Veena

    2017-01-01

    Let $G = (V,E)$ be a simple connected graph. Theeccentric-distance sum of $G$ is defined as$\\xi^{ds}(G) =\\ds\\sum_{\\{u,v\\}\\subseteq V(G)} [e(u)+e(v)] d(u,v)$, where $e(u)$ %\\dsis the eccentricity of the vertex $u$ in $G$ and $d(u,v)$ is thedistance between $u$ and $v$. In this paper, we establish formulaeto calculate the eccentric-distance sum for some graphs, namelywheel, star, broom, lollipop, double star, friendship, multi-stargraph and the join of $P_{n-2}$ and $P_2$.

  8. The eccentric-distance sum of some graphs

    Directory of Open Access Journals (Sweden)

    Padmapriya P

    2017-04-01

    Full Text Available Let $G = (V,E$ be a simple connected graph. Theeccentric-distance sum of $G$ is defined as$\\xi^{ds}(G =\\ds\\sum_{\\{u,v\\}\\subseteq V(G} [e(u+e(v] d(u,v$, where $e(u$ %\\dsis the eccentricity of the vertex $u$ in $G$ and $d(u,v$ is thedistance between $u$ and $v$. In this paper, we establish formulaeto calculate the eccentric-distance sum for some graphs, namelywheel, star, broom, lollipop, double star, friendship, multi-stargraph and the join of $P_{n-2}$ and $P_2$.

  9. Medical Surveillance Monthly Report (MSMR). Volume 18, Number 08, August 2011

    Science.gov (United States)

    2011-08-01

    continue, and STI preven- tion eff orts should be reinforced. R E F E R E N C E S 1. Kuper H, Ye W, Broome U, et al. The risk of liver and bile duct ...hepatitis A virus (HAV) causes infl ammatory liver disease (hepatitis) in aff ected individu- als. Th e virus is spread through fecal-oral...ammatory liver disease (hepatitis B) in aff ected individ- uals. Th e virus is spread by percutaneous or mucous membrane exposure to infected blood or

  10. Pruning high-value Douglas-fir can reduce dwarf mistletoe severity and increase longevity in central Oregon

    Science.gov (United States)

    Maffei, Helen M; Filip, Gregory M; Gruelke, Nancy E; Oblinger, Brent W; Margolis, Ellis; Chadwick, Kristen L

    2016-01-01

    Mid- to very large-sized Douglas-fir (Pseudotsuga menzieseii var. menziesii) that were lightly- to moderately-infected by dwarf mistletoe (Arceuthobium douglasii) were analyzed over a 14-year period to evaluate whether mechanical pruning could eradicate mistletoe (or at least delay the onset of severe infection) without significantly affecting tree vitality and by inference, longevity. Immediate and longterm pruning effects on mistletoe infection severity were assessed by comparing pruned trees (n = 173) to unpruned trees (n = 55) with respect to: (1) percentage of trees with no visible infections 14 years post-pruning, (2) Broom Volume Rating (BVR), and (3) rate of BVR increase 14 years postpruning. Vitality/longevity (compared with unpruned trees) was assessed using six indicators: (1) tree survival, (2) the development of severe infections, (3) the development of dead tops, (4) tree-ring width indices, (5) Normalized Difference Vegetation Index (NDVI) from high-resolution multi-spectral imagery, and (6) live-crown ratio (LCR) and increment. Twenty-four percent of the pruned trees remained free of mistletoe 14 years post-pruning. Pruning is most likely to successfully eradicate mistletoe in lightly infected trees (BVR 1 or 2) without infected neighbors. Pruning significantly decreased mean BVR in the pruned versus the unpruned trees. However, the subsequent average rate of intensification (1.3–1.5 BVR per decade) was not affected, implying that a single pruning provides ~14 years respite in the progression of infection levels. Post-pruning infection intensification was slower on dominant and co-dominants than on intermediate or suppressed trees. The success of mistletoe eradication via pruning and need for follow-up pruning should be evaluated no sooner than 14 years after pruning to allow for the development of detectable brooms. Based on six indicators, foliage from witches brooms contribute little to long-term tree vitality since removal appears to have

  11. Non-uniformity Correction of Infrared Images by Midway Equalization

    Directory of Open Access Journals (Sweden)

    Yohann Tendero

    2012-07-01

    Full Text Available The non-uniformity is a time-dependent noise caused by the lack of sensor equalization. We present here the detailed algorithm and on line demo of the non-uniformity correction method by midway infrared equalization. This method was designed to suit infrared images. Nevertheless, it can be applied to images produced for example by scanners, or by push-broom satellites. The obtained single image method works on static images, is fully automatic, having no user parameter, and requires no registration. It needs no camera motion compensation, no closed aperture sensor equalization and is able to correct for a fully non-linear non-uniformity.

  12. Fixed-focus camera objective for small remote sensing satellites

    Science.gov (United States)

    Topaz, Jeremy M.; Braun, Ofer; Freiman, Dov

    1993-09-01

    An athermalized objective has been designed for a compact, lightweight push-broom camera which is under development at El-Op Ltd. for use in small remote-sensing satellites. The high performance objective has a fixed focus setting, but maintains focus passively over the full range of temperatures encountered in small satellites. The lens is an F/5.0, 320 mm focal length Tessar type, operating over the range 0.5 - 0.9 micrometers . It has a 16 degree(s) field of view and accommodates various state-of-the-art silicon detector arrays. The design and performance of the objective is described in this paper.

  13. Microwave Radiometry and Radiometers for Ocean Applications

    DEFF Research Database (Denmark)

    Skou, Niels

    2008-01-01

    The microwave radiometer system measures, within its bandwidth, the naturally emitted radiation – the brightness temperature – of substances within its antenna’s field of view. Thus a radiometer is really a sensitive and calibrated microwave receiver. The radiometer can be a basic total power....../antenna size, and the problem: scanning antenna/space- craft stability. In many cases good compromises have been reached, as evident recalling the many successful missions throughout the recent 30 years. But in some cases the situation calls for special solutions, like the push-broom system or the synthetic...

  14. Oceanography and the base of the pelagic food web in the southern Indian Ocean

    DEFF Research Database (Denmark)

    Visser, Andre; Nielsen, Torkel Gissel; Middelboe, Mathias

    2015-01-01

    Cape Town, South Africa, to Broome in north western Australia. Primary production was tightly linked to water column stability and nutrient availability, with high productivity (1144 mg C m22 day21) in the sub-tropical convergence zone, and falling off by an order of magnitude in the sub-tropical gyre...... and tropical waters off northwest Australia. Primary production was largely confined to the GF/F fraction (GF/F .75% of total production and usually much higher) and the photosynthetic parameters showed adaption to the prevailing light levels. Bacterial production ranged from 19 to 155 mg C m22 day21...

  15. Synergistic use of active and passive microwave in soil moisture estimation

    Science.gov (United States)

    O'Neill, P.; Chauhan, N.; Jackson, T.; Saatchi, S.

    1992-01-01

    Data gathered during the MACHYDRO experiment in central Pennsylvania in July 1990 have been utilized to study the synergistic use of active and passive microwave systems for estimating soil moisture. These data sets were obtained during an eleven-day period with NASA's Airborne Synthetic Aperture Radar (AIRSAR) and Push-Broom Microwave Radiometer (PBMR) over an instrumented watershed which included agricultural fields with a number of different crop covers. Simultaneous ground truth measurements were also made in order to characterize the state of vegetation and soil moisture under a variety of meteorological conditions. A combination algorithm is presented as applied to a representative corn field in the MACHYDRO watershed.

  16. Planificación estratégica de un circuito turístico hitórico-cultural experiencial: Itabuna - Bahia, Brasil

    OpenAIRE

    Gândara, J.M.; Mendes, J.; Moital, Miguel; Ribeiro, F.N.S.; Souza, I.J.; Goulart, L.A.

    2012-01-01

    itabuna has been one of the most important cities in the interior of bahia. for decades the production of cocoa gave it a prominent position in the state economy. at the end of 1980s, pests such as "witch's broom" ended the cocoa monoculture in the region and alternatives must were sought. the objective of this article is to analyze the potential of designing a historical/cultural experiential tourist product in itabuna. in order to achieve this objective, a bibliographical and documental rev...

  17. Forest insects and diseases in Fundy National Park in 1992. Technical note No. 276. Annual publication

    Energy Technology Data Exchange (ETDEWEB)

    Cormier, J.R.; McPhee, D.A.

    1993-01-01

    Personnel of the Forest Insect and Disease Survey regularly survey national parks for forest insect and disease conditions. This document discusses briefly some of the conditions encountered in Fundy National Park in 1992, including insects and diseases found throughout the Park that are likely to recur: Balsam gall midge, balsam twig aphid, birch casebearer, gypsy moth, porcupines, sirococcus shoot blight, white pine weevil, whitespotted sawyer beetle, yellowheaded spruce sawfly, leaf blister of yellow birch, snow damage, yellow witches' broom of balsam fir, and fall webworm.

  18. Ethnobotanical study of medicinal plants used by people in Zegie Peninsula, Northwestern Ethiopia.

    Science.gov (United States)

    Teklehaymanot, Tilahun; Giday, Mirutse

    2007-03-14

    An ethnobotanical study was conducted from October 2005 to June 2006 to investigate the uses of medicinal plants by people in Zegie Peninsula, northwestern Ethiopia. Information was gathered from 200 people: 70 female and 130 males, using semistructured questionnaire. Of which, six were male local healers. The informants, except the healers, were selected randomly and no appointment was made prior to the visits. Informant consensus factor (ICF) for category of ailments and the fidelity level (FL) of the medicinal plants were determined. Sixty-seven medicinal plants used as a cure for 52 ailments were documented. They are distributed across 42 families and 64 genera. The most frequently utilized plant part was the underground part (root/rhizome/bulb) (42%). The largest number of remedies was used to treat gastrointestinal disorder and parasites infections (22.8%) followed by external injuries and parasites infections (22.1%). The administration routes are oral (51.4%), external (38.6%), nasal (7.9%), and ear (2.1%). The medicinal plants that were presumed to be effective in treating a certain category of disease, such as 'mich' and febrile diseases (0.80) had higher ICF values. This probably indicates a high incidence of these types of diseases in the region, possibly due to the poor socio-economic and sanitary conditions of this people. The medicinal plants that are widely used by the local people or used as a remedy for a specific ailment have higher FL values (Carissa spinarum, Clausena anisata, Acokanthera schimperi, Calpurnia aurea, Ficus thonningii, and Cyphostemma junceum) than those that are less popular or used to treat more than one type of ailments (Plumbago zeylanicum, Dorstenia barnimiana).

  19. Ethnobotanical study of medicinal plants used by people in Zegie Peninsula, Northwestern Ethiopia

    Directory of Open Access Journals (Sweden)

    Giday Mirutse

    2007-03-01

    Full Text Available Abstract An ethnobotanical study was conducted from October 2005 to June 2006 to investigate the uses of medicinal plants by people in Zegie Peninsula, northwestern Ethiopia. Information was gathered from 200 people: 70 female and 130 males, using semistructured questionnaire. Of which, six were male local healers. The informants, except the healers, were selected randomly and no appointment was made prior to the visits. Informant consensus factor (ICF for category of aliments and the fidelity level (FL of the medicinal plants were determined. Sixty-seven medicinal plants used as a cure for 52 aliments were documented. They are distributed across 42 families and 64 genera. The most frequently utilized plant part was the underground part (root/rhizome/bulb (42%. The largest number of remedies was used to treat gastrointestinal disorder and parasites infections (22.8% followed by external injuries and parasites infections (22.1%. The administration routes are oral (51.4%, external (38.6%, nasal (7.9%, and ear (2.1%. The medicinal plants that were presumed to be effective in treating a certain category of disease, such as 'mich' and febrile diseases (0.80 had higher ICF values. This probably indicates a high incidence of these types of diseases in the region, possibly due to the poor socio-economic and sanitary conditions of this people. The medicinal plants that are widely used by the local people or used as a remedy for a specific aliment have higher FL values (Carissa spinarum, Clausena anisata, Acokanthera schimperi, Calpurnia aurea, Ficus thonningii, and Cyphostemma junceum than those that are less popular or used to treat more than one type of aliments (Plumbago zeylanicum, Dorstenia barnimiana.

  20. Cacao families and parents selected as resistant to natural infection of Moniliophthora perniciosa

    Directory of Open Access Journals (Sweden)

    Carolina S. Benjamin

    2016-07-01

    Full Text Available The known sources of resistance to witches’ broom (WB, a severe disease of cacao, are limited. Aiming to identify families and parents resistant to Moniliophthora perniciosa, a population of 22 families was evaluated by assessing the number of brooms formed per tree during 10 years under field conditions. The population was established in randomized blocks with three replications of 12 plants each. Significant differences were observed among families. The most outstanding families were NA33 x RB39 and RB39 x P4B, which presented the lowest WB incidence during 10 years. The increase in natural field infection of Scavina clones families and their descendants were clearly demonstrated after 2006. The existence of additive effects for resistance appears clearly for families, which had other source of resistance associated with Scavina. Clones RB39, RB36, P4B, NA33 and CSUL3 are promising parents for pyramiding resistance genes and increasing the stability and durability of resistance to WB.

  1. Cacao diseases-the trilogy revisited.

    Science.gov (United States)

    Evans, Harry C

    2007-12-01

    ABSTRACT This paper reviews the significant advances by the diseases themselves, as well as by the scientists, in the intervening period since the disease trilogy was first delimited in 1989. The impact of these diseases, black pod, witches' broom, and frosty pod rot, has increased dramatically. In addition, there have been radical changes in the taxonomic profiles of these pathogens, which have been based on both traditional (morphological, cytological) and modern (molecular) approaches. Black pod is caused by a complex of Phytophthora species, in which P. palmivora still is the most important worldwide. However, recent invasion of the principal cacao-growing countries of West Africa by the more virulent P. megakarya has been cause for concern. The latter evolved in the ancient forests straddling the Cameroon-Nigerian border as a primary coloniser of fallen fruit. Conversely, frosty pod rot, caused by Moniliophthora roreri, and witches' broom, caused by M. (Crinipellis) perniciosa, both neotropical diseases, are hemibiotrophic, coevolved pathogens. Respectively, M. roreri arose on Theobroma gileri in submontane forests on the north-western slopes of the Andes, whereas M. perniciosa developed as a complex of pathotypes with a considerably wider geographic and host range within South America; the cacao pathotype evolved on that host in the Amazon basin. The inter-relationships of these vicariant species and their recent spread are discussed, together with control strategies.

  2. Strategies for Control of Moniliophthora roreri and Moniliophthora perniciosa in Theobroma cacao L.: A Systematic Review

    Directory of Open Access Journals (Sweden)

    Paola Andrea Tirado-Gallego,

    2016-09-01

    Full Text Available One of the most important limitations of cocoa production worldwide is primarily diseases caused by the pathogenic fungi of the genus Moniliophthora sp., especially, Moniliophthora roreri and Moniliophthora perniciosa, causing moniliasis and the witches' broom disease, respectively; both diseases are highly invasive and endemic in cocoa. The objective of this study was to describe the control strategies that can be used to handle the moniliasis and witches' broom diseases. This study was conducted in accor-dance with the Prisma (Preferred Reporting Items for Systematic Reviews and Meta-Analyses statement, for which a systematic literature search in the ScienceDirect, Springer Link and Scopus databases was used. Original investigation articles over the last 12 years were included, inclusion and exclusion criteria were also applied. In countries like Brazil and Costa Rica, the year with most reports of related articles was 2008. The most used strategies for the disease control are the phytosanitation, the copper-based fungicides and biologic agents control of fungus and bacteria, specially, Trichoderma sp. and Bacillus sp. One of the most recommended methodologies on the studied articles was the optimization of treatments employing the combination of physical, biological and chemical agents

  3. A Two-Phase Space Resection Model for Accurate Topographic Reconstruction from Lunar Imagery with PushbroomScanners.

    Science.gov (United States)

    Xu, Xuemiao; Zhang, Huaidong; Han, Guoqiang; Kwan, Kin Chung; Pang, Wai-Man; Fang, Jiaming; Zhao, Gansen

    2016-04-11

    Exterior orientation parameters' (EOP) estimation using space resection plays an important role in topographic reconstruction for push broom scanners. However, existing models of space resection are highly sensitive to errors in data. Unfortunately, for lunar imagery, the altitude data at the ground control points (GCPs) for space resection are error-prone. Thus, existing models fail to produce reliable EOPs. Motivated by a finding that for push broom scanners, angular rotations of EOPs can be estimated independent of the altitude data and only involving the geographic data at the GCPs, which are already provided, hence, we divide the modeling of space resection into two phases. Firstly, we estimate the angular rotations based on the reliable geographic data using our proposed mathematical model. Then, with the accurate angular rotations, the collinear equations for space resection are simplified into a linear problem, and the global optimal solution for the spatial position of EOPs can always be achieved. Moreover, a certainty term is integrated to penalize the unreliable altitude data for increasing the error tolerance. Experimental results evidence that our model can obtain more accurate EOPs and topographic maps not only for the simulated data, but also for the real data from Chang'E-1, compared to the existing space resection model.

  4. The Slope Imaging Multi-Polarization Photon-Counting Lidar: Development and Performance Results

    Science.gov (United States)

    Dabney, Phillip

    2010-01-01

    The Slope Imaging Multi-polarization Photon-counting Lidar is an airborne instrument developed to demonstrate laser altimetry measurement methods that will enable more efficient observations of topography and surface properties from space. The instrument was developed through the NASA Earth Science Technology Office Instrument Incubator Program with a focus on cryosphere remote sensing. The SIMPL transmitter is an 11 KHz, 1064 nm, plane-polarized micropulse laser transmitter that is frequency doubled to 532 nm and split into four push-broom beams. The receiver employs single-photon, polarimetric ranging at 532 and 1064 nm using Single Photon Counting Modules in order to achieve simultaneous sampling of surface elevation, slope, roughness and depolarizing scattering properties, the latter used to differentiate surface types. Data acquired over ice-covered Lake Erie in February, 2009 are documenting SIMPL s measurement performance and capabilities, demonstrating differentiation of open water and several ice cover types. ICESat-2 will employ several of the technologies advanced by SIMPL, including micropulse, single photon ranging in a multi-beam, push-broom configuration operating at 532 nm.

  5. Image Mosaicking Approach for a Double-Camera System in the GaoFen2 Optical Remote Sensing Satellite Based on the Big Virtual Camera.

    Science.gov (United States)

    Cheng, Yufeng; Jin, Shuying; Wang, Mi; Zhu, Ying; Dong, Zhipeng

    2017-06-20

    The linear array push broom imaging mode is widely used for high resolution optical satellites (HROS). Using double-cameras attached by a high-rigidity support along with push broom imaging is one method to enlarge the field of view while ensuring high resolution. High accuracy image mosaicking is the key factor of the geometrical quality of complete stitched satellite imagery. This paper proposes a high accuracy image mosaicking approach based on the big virtual camera (BVC) in the double-camera system on the GaoFen2 optical remote sensing satellite (GF2). A big virtual camera can be built according to the rigorous imaging model of a single camera; then, each single image strip obtained by each TDI-CCD detector can be re-projected to the virtual detector of the big virtual camera coordinate system using forward-projection and backward-projection to obtain the corresponding single virtual image. After an on-orbit calibration and relative orientation, the complete final virtual image can be obtained by stitching the single virtual images together based on their coordinate information on the big virtual detector image plane. The paper subtly uses the concept of the big virtual camera to obtain a stitched image and the corresponding high accuracy rational function model (RFM) for concurrent post processing. Experiments verified that the proposed method can achieve seamless mosaicking while maintaining the geometric accuracy.

  6. Energy evaluation of forest residues originated from shrub species in Galicia

    Energy Technology Data Exchange (ETDEWEB)

    Nunez-Regueira, L.; Proupin-Castineiras, J.; Rodriguez-Anon, J.A. [University of Santiago (Spain). Dept. of Applied Physics

    2004-01-01

    In this study we present an alternative for the management of the excess of shrub species that nowadays take up around 800,000 ha in Galicia (NW Spain). This alternative is based on the exploitation of the energetic resources contained in the excess of shrubs by their combustion in specially designed plants for production of electric energy. The different species were sorted into three groups: Ulex europaeus L. (furze), Sarothamnus scoparius (L.) Link (broom) and Erica sp. (heaths). Their LHV were calculated through measurements of the corresponding HHV and resulted 7600, 7300 and 7200 kJ kg{sup -1} respectively. Biomass productions (T ha{sup -1}) were also calculated resulting 20 T ha{sup -1} (furze), 30 T ha{sup -1} (broom), and 15 T ha{sup -1} (heaths). Analyses of all these values make these species very valuable for their energy exploitation. Samples were collected over one year in different zones to study the effect of the environmental conditions on the calorific values. (Author)

  7. Effect of 7 botany species of plants on Zabrotes subfasciatus (Bohemann

    Directory of Open Access Journals (Sweden)

    Roberto Valdés Herrera

    2016-03-01

    Full Text Available The effect of several plant in the control of weevil Zabrotes subfasciatus (Boh. (Coleoptera; Bruchidae was evaluated. The plant were caisimón of anisette, apasote, bitter broom, sage, sassafras, garlic leek and nim were used. In the experiment they were carried out 2 variants, one to see the effect on a female of the insect and another to observe the behavior in group of Z. subfasciatus. The effects of the same ones were evaluated in the ovoposición and in the time of permanency of the insect on each plant residual. the death to Z. subfasciatus. The residuals of the molinaje of bitter broom, I age leek, caisimón of anisette and sage those that bigger repelencia effect had were, as much in the permanency as in the number of eggs ovopositados for the female of Z. subfasciatus. Correlation didn’t exist among the time of permanency of the insect in the different treatments and the number of on eggs. The biggest quantity in eggs was ovopositados it has more than enough sassafras.

  8. Identifikasi Molekuler Fitoplasma yang Berasosiasi dengan Tanaman Kaktus Hias Opuntia sp.

    Directory of Open Access Journals (Sweden)

    Ariny Prasetya

    2017-11-01

    Full Text Available Cactus species (Opuntia sp. is a popular ornamental succulent plant. Some ornamental cactus species in Indonesia showing proliferation and green mosaic pattern symptoms have been reported to be associated with phytoplasma infection. However, further molecular identification for accurate classification of the causal phytoplasma has not been done.  This study aimed to diagnose phytoplasma associated with Opuntia sp. based on molecular methods involving PCR standard combined with nested-PCR, cloning and DNA sequencing. Standard PCR was carried out using P1/P7 primers followed by nested-PCR using R16F2n/R16R2 or fU5/rU3 primer pairs which amplify the 16S rRNA gene targets of 1.2 kb and 880 bp, respectively. Amplified fragment of nested-PCR using R16F2n/R16R2 primers was chosen to be cloned and sequenced for further identification and classification of phytoplasma.  BLASTn analysis showed that the phytoplasma from Opuntia sp. was closely related to 16SrII group. Phylogenetic analysis and in silico RFLP indicated that phytoplasma strain infecting Opuntia sp. was a member of subgroup 16SrII-C (cactus witches’ broom phytoplasma. This is a newly report of cactus witches’ broom phytoplasma on Opuntia sp. in Indonesia.   

  9. Phytoplasma Effector SAP54 Induces Indeterminate Leaf-Like Flower Development in Arabidopsis Plants1[C][W][OA

    Science.gov (United States)

    MacLean, Allyson M.; Sugio, Akiko; Makarova, Olga V.; Findlay, Kim C.; Grieve, Victoria M.; Tóth, Réka; Nicolaisen, Mogens; Hogenhout, Saskia A.

    2011-01-01

    Phytoplasmas are insect-transmitted bacterial plant pathogens that cause considerable damage to a diverse range of agricultural crops globally. Symptoms induced in infected plants suggest that these phytopathogens may modulate developmental processes within the plant host. We report herein that Aster Yellows phytoplasma strain Witches’ Broom (AY-WB) readily infects the model plant Arabidopsis (Arabidopsis thaliana) ecotype Columbia, inducing symptoms that are characteristic of phytoplasma infection, such as the production of green leaf-like flowers (virescence and phyllody) and increased formation of stems and branches (witches’ broom). We found that the majority of genes encoding secreted AY-WB proteins (SAPs), which are candidate effector proteins, are expressed in Arabidopsis and the AY-WB insect vector Macrosteles quadrilineatus (Hemiptera; Cicadellidae). To identify which of these effector proteins induce symptoms of phyllody and virescence, we individually expressed the effector genes in Arabidopsis. From this screen, we have identified a novel AY-WB effector protein, SAP54, that alters floral development, resulting in the production of leaf-like flowers that are similar to those produced by plants infected with this phytoplasma. This study offers novel insight into the effector profile of an insect-transmitted plant pathogen and reports to our knowledge the first example of a microbial pathogen effector protein that targets flower development in a host. PMID:21849514

  10. Phytoplasma effector SAP54 induces indeterminate leaf-like flower development in Arabidopsis plants.

    Science.gov (United States)

    MacLean, Allyson M; Sugio, Akiko; Makarova, Olga V; Findlay, Kim C; Grieve, Victoria M; Tóth, Réka; Nicolaisen, Mogens; Hogenhout, Saskia A

    2011-10-01

    Phytoplasmas are insect-transmitted bacterial plant pathogens that cause considerable damage to a diverse range of agricultural crops globally. Symptoms induced in infected plants suggest that these phytopathogens may modulate developmental processes within the plant host. We report herein that Aster Yellows phytoplasma strain Witches' Broom (AY-WB) readily infects the model plant Arabidopsis (Arabidopsis thaliana) ecotype Columbia, inducing symptoms that are characteristic of phytoplasma infection, such as the production of green leaf-like flowers (virescence and phyllody) and increased formation of stems and branches (witches' broom). We found that the majority of genes encoding secreted AY-WB proteins (SAPs), which are candidate effector proteins, are expressed in Arabidopsis and the AY-WB insect vector Macrosteles quadrilineatus (Hemiptera; Cicadellidae). To identify which of these effector proteins induce symptoms of phyllody and virescence, we individually expressed the effector genes in Arabidopsis. From this screen, we have identified a novel AY-WB effector protein, SAP54, that alters floral development, resulting in the production of leaf-like flowers that are similar to those produced by plants infected with this phytoplasma. This study offers novel insight into the effector profile of an insect-transmitted plant pathogen and reports to our knowledge the first example of a microbial pathogen effector protein that targets flower development in a host.

  11. Modelling of the bending behaviour of double floor systems for different contact surfaces

    Directory of Open Access Journals (Sweden)

    Attila PUSKAS

    2014-07-01

    Full Text Available In the practice of prefabricated concrete structures considerable surfaces of intermediate floors are constructed using double floor systems with prefabricated bottom layer and upper layer. This second layer is cast on site. The quality of the prefabricated concrete is often of superior class with respect to the monolithic layer. In the service state of the double floor system, important compressive stresses appear in the upper concrete layer. On the other hand, the bond quality between the concrete layers cast in successive stages raises questions especially in the case of hollow core floor units with no connecting reinforcement in-between. The paper presents results of the numerical models prepared for double floor elements having different thicknesses for the top and bottom layers, subjected to bending. Three situations have been studied: stepped top surface of the prefabricated slab with no connecting reinforcement, broom swept tracks on the prefabricated slab with no connecting reinforcement and broom swept tracks on the prefabricated slab with stirrups connecting the concrete layers. For each situation two different ratios of the thicknesses of the layers have been considered. The results are emphasizing the critical regions of the elements, the differences in crack development and in the behaviour resulting from surface preparation and use of connecting reinforcements.

  12. Polonium (²¹⁰Po), uranium (²³⁴U, ²³⁸U) isotopes and trace metals in mosses from Sobieszewo Island, northern Poland.

    Science.gov (United States)

    Boryło, Alicja; Nowicki, Waldemar; Olszewski, Grzegorz; Skwarzec, Bogdan

    2012-01-01

    The activity of polonium (210)Po and uranium (234)U, (238)U radionuclides, as well as trace metals in mosses, collected from Sobieszewo Island area (northern Poland), were determined using the alpha spectrometry, AAS (atomic absorption spectrometry) and OES-ICP (atomic emission spectrometry with inductively coupled plasma). The concentrations of mercury (directly from the solid sample) were determined by the cold vapor technique of CV AAS. The obtained results revealed that the concentrations of (210)Po, (234)U, and (238)U in the two analyzed kinds of mosses: schrebers big red stem moss (Pleurozium schreberi) and broom moss (Dicranum scoparium) were similar. The higher polonium concentrations were found in broom moss (Dicranum scoparium), but uranium concentrations were relatively low for both species of analyzed mosses. Among the analyzed trace metals the highest concentration in mosses was recorded for iron, while the lowest for nickel, cadmium and mercury. The obtained studies showed that the sources of polonium and uranium isotopes, as well as trace metals in analyzed mosses are air city contaminations transported from Gdańsk and from existing in the vicinity the phosphogypsum waste heap in Wiślinka (near Gdańsk).

  13. A Two-Phase Space Resection Model for Accurate Topographic Reconstruction from Lunar Imagery with PushbroomScanners

    Directory of Open Access Journals (Sweden)

    Xuemiao Xu

    2016-04-01

    Full Text Available Exterior orientation parameters’ (EOP estimation using space resection plays an important role in topographic reconstruction for push broom scanners. However, existing models of space resection are highly sensitive to errors in data. Unfortunately, for lunar imagery, the altitude data at the ground control points (GCPs for space resection are error-prone. Thus, existing models fail to produce reliable EOPs. Motivated by a finding that for push broom scanners, angular rotations of EOPs can be estimated independent of the altitude data and only involving the geographic data at the GCPs, which are already provided, hence, we divide the modeling of space resection into two phases. Firstly, we estimate the angular rotations based on the reliable geographic data using our proposed mathematical model. Then, with the accurate angular rotations, the collinear equations for space resection are simplified into a linear problem, and the global optimal solution for the spatial position of EOPs can always be achieved. Moreover, a certainty term is integrated to penalize the unreliable altitude data for increasing the error tolerance. Experimental results evidence that our model can obtain more accurate EOPs and topographic maps not only for the simulated data, but also for the real data from Chang’E-1, compared to the existing space resection model.

  14. Genomic analyses and expression evaluation of thaumatin-like gene family in the cacao fungal pathogen Moniliophthora perniciosa.

    Science.gov (United States)

    Franco, Sulamita de Freitas; Baroni, Renata Moro; Carazzolle, Marcelo Falsarella; Teixeira, Paulo José Pereira Lima; Reis, Osvaldo; Pereira, Gonçalo Amarante Guimarães; Mondego, Jorge Maurício Costa

    2015-10-30

    Thaumatin-like proteins (TLPs) are found in diverse eukaryotes. Plant TLPs, known as Pathogenicity Related Protein (PR-5), are considered fungal inhibitors. However, genes encoding TLPs are frequently found in fungal genomes. In this work, we have identified that Moniliophthora perniciosa, a basidiomycete pathogen that causes the Witches' Broom Disease (WBD) of cacao, presents thirteen putative TLPs from which four are expressed during WBD progression. One of them is similar to small TLPs, which are present in phytopathogenic basidiomycete, such as wheat stem rust fungus Puccinia graminis. Fungi genomes annotation and phylogenetic data revealed a larger number of TLPs in basidiomycetes when comparing with ascomycetes, suggesting that these proteins could be involved in specific traits of mushroom-forming species. Based on the present data, we discuss the contribution of TLPs in the combat against fungal competitors and hypothesize a role of these proteins in M. perniciosa pathogenicity. Copyright © 2015 Elsevier Inc. All rights reserved.

  15. Genetic variation assessment of acid lime accessions collected from south of Iran using SSR and ISSR molecular markers.

    Science.gov (United States)

    Sharafi, Ata Allah; Abkenar, Asad Asadi; Sharafi, Ali; Masaeli, Mohammad

    2016-01-01

    Iran has a long history of acid lime cultivation and propagation. In this study, genetic variation in 28 acid lime accessions from five regions of south of Iran, and their relatedness with other 19 citrus cultivars were analyzed using Simple Sequence Repeat (SSR) and Inter-Simple Sequence Repeat (ISSR) molecular markers. Nine primers for SSR and nine ISSR primers were used for allele scoring. In total, 49 SSR and 131 ISSR polymorphic alleles were detected. Cluster analysis of SSR and ISSR data showed that most of the acid lime accessions (19 genotypes) have hybrid origin and genetically distance with nucellar of Mexican lime (9 genotypes). As nucellar of Mexican lime are susceptible to phytoplasma, these acid lime genotypes can be used to evaluate their tolerance against biotic constricts like lime "witches' broom disease".

  16. Resumes of the Bird mission

    Science.gov (United States)

    Lorenz, E.; Borwald, W.; Briess, K.; Kayal, H.; Schneller, M.; Wuensten, Herbert

    2004-11-01

    The DLR micro satellite BIRD (Bi-spectral Infra Red Detection) was piggy- back launched with the Indian Polar Satellite Launch Vehicle PSLV-C3 into a 570 km circular sun-synchronous orbit on 22 October 2001. The BIRD mission, fully funded by the DLR, answers topical technological and scientific questions related to the operation of a compact infra- red push-broom sensor system on board of a micro satellite and demonstrates new spacecraft bus technologies. BIRD mission control is conducted by DLR / GSOC in Oberpfaffenhofen. Commanding, data reception and data processing is performed via ground stations in Weilheim and Neustrelitz (Germany). The BIRD mission is a demonstrator for small satellite projects dedicated to the hazard detection and monitoring. In the year 2003 BIRD has been used in the ESA project FUEGOSAT to demonstrate the utilisation of innovative space technologies for fire risk management.

  17. Molecular characterisation of fungal endophytic morphospecies associated with the indigenous forest tree, Theobroma gileri, in Ecuador.

    Science.gov (United States)

    Thomas, Sarah E; Crozier, Jayne; Catherine Aime, M; Evans, Harry C; Holmes, Keith A

    2008-07-01

    Fungal endophytes were isolated from healthy stems and pods of Theobroma gileri, an alternative host of the frosty pod rot pathogen of cacao. Non-sporulating isolates were grouped into 46 different morphological species according to their colony morphology. Many of these morphospecies were assumed to be basidiomycetes and, therefore, were of particular interest. Basidiomycetous endophytes have received far less attention than ascomycetes and also have potential as biological control agents of the basidiomycetous pathogens of T. cacao: Moniliophthora roreri (frosty pod rot pathogen) and M. perniciosa (witches' broom disease). The morphospecies were further characterised by molecular analyses. Amplification of the nuLSU was undertaken for phylogenetic placement of these non-sporulating cultures and revealed a total of 31 different taxa of which 15 were basidiomycetes belonging to the class Agaricomycetes, and 16 ascomycetes primarily belonging to the Sordariomycetes.

  18. Aboriginal women and Asian men: a maritime history of color in white Australia.

    Science.gov (United States)

    Balint, Ruth

    2012-01-01

    In 1901, Broome—a port town on the northwest edge of the Australian continent—was one of the principal and most lucrative industrial pearling centers in the world and entirely dependent on Asian indentured labor. Relations between Asian crews and local Aboriginal people were strong, at a time when the project of White Australia was being pursued with vigorous, often fanatical dedication across the newly federated continent. It was the policing of Aboriginal women, specifically their relations with Asian men, that became the focus of efforts by authorities and missionaries to uphold and defend their commitment to the White Australia policy. This article examines the historical experience of Aboriginal women in the pearling industry of northwest Australia and the story of Asian-Aboriginal cohabitation in the face of oppressive laws and regulations. It then explores the meaning of “color” in contemporary Broome for the descendants of this mixed heritage today.

  19. Chiral domain formation from the mixture of achiral rod-like liquid crystal and tri boomerang-shaped molecule

    Science.gov (United States)

    Lee, Ji-Hoon; Yoon, Tae-Hoon

    2013-08-01

    Spontaneous formation of chiral domains such as a helical filament and a bent-broom texture was observed from the mixture of a rod-like liquid crystal octylcyano-biphenyl (8CB) and a tri boomerang-shaped 2,4,6-triphenoxy-1,3,5-triazine (triphenoxy) molecule. Although the constituent molecules were achiral, their mixture showed the chiral domains with the equal fraction of the opposite handedness. No tilt of 8CB molecules in the smectic layer was observed, implying the chirality is not due to the polar packing and tilt of the molecules. In addition, the splay and bend elastic constant of 8CB was decreased after doping triphenoxy. A structural conformation of triphenoxy and an orientational coupling between 8CB and triphenoxy are considered to be related to the chiral domain formation.

  20. Environmental effects on the compressive properties - Thermosetting vs. thermoplastic composites

    Science.gov (United States)

    Haque, A.; Jeelani, S.

    1992-01-01

    The influence of moisture and temperature on the compressive properties of graphite/epoxy and APC-2 materials systems was investigated to assess the viability of using APC-2 instead of graphite/epoxy. Data obtained indicate that the moisture absorption rate of T-300/epoxy is higher than that of APC-2. Thick plate with smaller surface area absorbs less moisture than thin plate with larger surface area. The compressive strength and modulus of APC-2 are higher than those of T-300/epoxy composite, and APC-2 sustains higher compressive strength in the presence of moisture. The compressive strength and modulus decrease with the increase of temperature in the range of 23-100 C. The compression failure was in the form of delamination, interlaminar shear, and end brooming.

  1. Rapid and efficient protocol for DNA extraction and molecular identification of the basidiomycete Crinipellis perniciosa.

    Science.gov (United States)

    Melo, S C O; Pungartnik, C; Cascardo, J C M; Brendel, M

    2006-12-14

    DNA isolation from some fungal organisms is difficult because they have cell walls or capsules that are relatively unsusceptible to lysis. Beginning with a yeast Saccharomyces cerevisiae genomic DNA isolation method, we developed a 30-min DNA isolation protocol for filamentous fungi by combining cell wall digestion with cell disruption by glass beads. High-quality DNA was isolated with good yield from the hyphae of Crinipellis perniciosa, which causes witches' broom disease in cacao, from three other filamentous fungi, Lentinus edodes, Agaricus blazei, Trichoderma stromaticum, and from the yeast S. cerevisiae. Genomic DNA was suitable for PCR of specific actin primers of C. perniciosa, allowing it to be differentiated from fungal contaminants, including its natural competitor, T. stromaticum.

  2. A multi-layered mechanistic modelling approach to understand how effector genes extend beyond phytoplasma to modulate plant hosts, insect vectors and the environment.

    Science.gov (United States)

    Tomkins, Melissa; Kliot, Adi; Marée, Athanasius Fm; Hogenhout, Saskia A

    2018-03-13

    Members of the Candidatus genus Phytoplasma are small bacterial pathogens that hijack their plant hosts via the secretion of virulence proteins (effectors) leading to a fascinating array of plant phenotypes, such as witch's brooms (stem proliferations) and phyllody (retrograde development of flowers into vegetative tissues). Phytoplasma depend on insect vectors for transmission, and interestingly, these insect vectors were found to be (in)directly attracted to plants with these phenotypes. Therefore, phytoplasma effectors appear to reprogram plant development and defence to lure insect vectors, similarly to social engineering malware, which employs tricks to lure people to infected computers and webpages. A multi-layered mechanistic modelling approach will enable a better understanding of how phytoplasma effector-mediated modulations of plant host development and insect vector behaviour contribute to phytoplasma spread, and ultimately to predict the long reach of phytoplasma effector genes. Copyright © 2018. Published by Elsevier Ltd.

  3. Working group on a database for cold moderators

    International Nuclear Information System (INIS)

    Broome, T. A.

    1997-09-01

    The working group meeting was chaired by Broome. The working group was charged with the task: Gather a table of neutronic performance known for specific designs; operational, test, theoretical/calculated. Set up generation of a (very briefly) annotated bibliography on this topic. A joint meeting with the Working Group on Moderator Performance Measurements was held to define the data on cold moderators which should be contained in the data base. It became clear that there exists only a small amount of data in very different forms much of it incomplete in its detail. So, rather than spending time collating existing data, it was considered to be more generally profitable to concentrate on the specification of the database and its implementation. The aim was to propose a system which could start quickly and simply yet be capable of extension and development in the future. The system was outlined in the summary session of the workshop and agreed by the participants.

  4. Study of root and leaf rachis of Spathelia excelsa: phytochemistry and activity against fungus Moniliophthora perniciosa associated with cupuassu (Theobroma grandiflorum); Estudo em raiz e raquis foliar de Spathelia excelsa: fitoquimica e atividade frente ao fungo Moniliophthora perniciosa associado ao cupuacuzeiro (Theobroma grandiflorum)

    Energy Technology Data Exchange (ETDEWEB)

    Carvalho, Loretta Ennes de; Lima, Maria da Paz; Maximo, Ariane da Costa; Pereira, Elaine Cristina da Silva; Moreira, Wagner Alan dos Santos [Instituto Nacional de Pesquisas da Amazonia (INPA), Manaus, AM (Brazil). Coordenacao de Pesquisas em Tecnologia e Inovacao; Ferreira, Antonio Gilberto [Universidade Federal de Sao Carlos (UFSCAR), SP (Brazil). Dept. de Quimica; Veras, Solange de Mello [Universidade Federal do Amazonas (UFAM), Manaus, AM (Brazil). Fac. de Ciencias Agrarias; Souza, Maria Geralda de, E-mail: mdapaz@inpa.gov.br [Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA), Manaus, AM (Brazil)

    2012-07-01

    The chemical composition of Spathelia excelsa (Krause) R. S. Cowan and Brizicky was investigated and the limonoids harrisonin (1) and deacetylspathelin (2), alkaloids folinin and casimiroin mixture (3a,b), plus a further casimiroin (3b) were identified in methanol extract from root. The CH{sub 2}Cl{sub 2} extract from the rachis yielded protolimonoid 3{beta}-angeloyl-21,24-epoxy-7{alpha},21{alpha},23{alpha},25-tetrahydroxy-4{alpha},4{beta},8{beta},10{beta}-tetramethyl -25-dimethyl-14,18-cyclo-5{alpha},13{alpha},14{alpha},17{alpha}-cholestane (4), and methanol extract, the limonoids limonin diosphenol (5) and perforatin (6), as well as the chromone biflorin (7). Harrisonin and biflorin were isolated for the first time in this genus. On the antifungal assay against witches' broom (Moniliophthora perniciosa) compound 3b was found to be active. (author)

  5. Study of root and leaf rachis of Spathelia excelsa: phytochemistry and activity against fungus Moniliophthora perniciosa associated with cupuassu (Theobroma grandiflorum); Estudo em raiz e raquis foliar de Spathelia excelsa: fitoquimica e atividade frente ao fungo Moniliophthora perniciosa associado ao cupuacuzeiro (Theobroma grandiflorum)

    Energy Technology Data Exchange (ETDEWEB)

    Carvalho, Loretta Ennes de; Lima, Maria da Paz; Maximo, Ariane da Costa; Pereira, Elaine Cristina da Silva; Moreira, Wagner Alan dos Santos [Instituto Nacional de Pesquisas da Amazonia (INPA), Manaus, AM (Brazil). Coordenacao de Pesquisas em Tecnologia e Inovacao; Ferreira, Antonio Gilberto [Universidade Federal de Sao Carlos (UFSCAR), SP (Brazil). Dept. de Quimica; Veras, Solange de Mello [Universidade Federal do Amazonas (UFAM), Manaus, AM (Brazil). Fac. de Ciencias Agrarias; Souza, Maria Geralda de, E-mail: mdapaz@inpa.gov.br [Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA), Manaus, AM (Brazil)

    2012-07-01

    The chemical composition of Spathelia excelsa (Krause) R. S. Cowan and Brizicky was investigated and the limonoids harrisonin (1) and deacetylspathelin (2), alkaloids folinin and casimiroin mixture (3a,b), plus a further casimiroin (3b) were identified in methanol extract from root. The CH{sub 2}Cl{sub 2} extract from the rachis yielded protolimonoid 3{beta}-angeloyl-21,24-epoxy-7{alpha},21{alpha},23{alpha},25-tetrahydroxy-4{alpha},4{beta},8{beta},10{beta}-tetramethyl -25-dimethyl-14,18-cyclo-5{alpha},13{alpha},14{alpha},17{alpha}-cholestane (4), and methanol extract, the limonoids limonin diosphenol (5) and perforatin (6), as well as the chromone biflorin (7). Harrisonin and biflorin were isolated for the first time in this genus. On the antifungal assay against witches' broom (Moniliophthora perniciosa) compound 3b was found to be active. (author)

  6. Scandinavian bovine practitioners' attitudes to the use of analgesics in cattle

    DEFF Research Database (Denmark)

    Thomsen, Peter; Gidekull, M; Herskin, Mette S

    2010-01-01

    In recent years, pain in cattle (Stafford and Mellor 2007) and the welfare of diseased animals (Broom 2006) have received increased scientific attention. New knowledge has emerged regarding the pain that may be associated with typical production diseases (Todd and others 2007) and routine...... management procedures such as castration (Boesch and others 2008) and dehorning (Stewart and others 2009). As well as these changes in scientific focus, the emphasis on the treatment of pain in veterinary medicine has changed dramatically during the past 10 to 15 years (Flecknell 2008). In order to allow...... implementation of new knowledge regarding pain in dairy cattle, it is important to understand the attitudes of bovine practitioners and their perceived limiting factors. This short communication presents the results of a questionnaire survey focusing on the use of analgesics in cows and calves among bovine...

  7. Drop weight impact measurements of HE sensitivity: modified detection methods

    International Nuclear Information System (INIS)

    Preston, D N; Brown, G W; Tappan, B C; Oshwald, D M; Koby, J R; Schoonover, M L

    2014-01-01

    High explosives small-scale sensitivity testing has been a hallmark of safety screening since WWII. Sensitivity testing was once crude and simple; broom sticks were used to scrape explosives on the floor while experimenters would look, listen, and smell for signs of a reaction. Since then, a wide variety of testing apparatus have been developed to explore the effects of different stimuli on explosives. In concert with the development of the machines themselves, the reaction detection methods have also evolved. This paper's focus is on the Los Alamos National Laboratory's (LANL) drop weight impact machine and reaction detection methods. A critical evaluation of results is presented with cautionary examples of false positives that can occur with non-explosive materials.

  8. The Aquarius Ocean Salinity Mission High Stability L-band Radiometer

    Science.gov (United States)

    Pellerano, Fernando A.; Piepmeier, Jeffrey; Triesky, Michael; Horgan, Kevin; Forgione, Joshua; Caldwell, James; Wilson, William J.; Yueh, Simon; Spencer, Michael; McWatters, Dalia; hide

    2006-01-01

    The NASA Earth Science System Pathfinder (ESSP) mission Aquarius, will measure global ocean surface salinity with approx.120 km spatial resolution every 7-days with an average monthly salinity accuracy of 0.2 psu (parts per thousand). This requires an L-band low-noise radiometer with the long-term calibration stability of less than or equal to 0.15 K over 7 days. The instrument utilizes a push-broom configuration which makes it impractical to use a traditional warm load and cold plate in front of the feedhorns. Therefore, to achieve the necessary performance Aquarius utilizes a Dicke radiometer with noise injection to perform a warm - hot calibration. The radiometer sequence between antenna, Dicke load, and noise diode has been optimized to maximize antenna observations and therefore minimize NEDT. This is possible due the ability to thermally control the radiometer electronics and front-end components to 0.1 Crms over 7 days.

  9. Advances and perspectives in bathymetry by airborne lidar

    Science.gov (United States)

    Zhou, Guoqing; Wang, Chenxi; Li, Mingyan; Wang, Yuefeng; Ye, Siqi; Han, Caiyun

    2015-12-01

    In this paper, the history of the airborne lidar and the development stages of the technology are reviewed. The basic principle of airborne lidar and the method of processing point-cloud data were discussed. At present, single point laser scanning method is widely used in bathymetric survey. Although the method has high ranging accuracy, the data processing and hardware system is too much complicated and expensive. For this reason, this paper present a kind of improved dual-frequency method for bathymetric and sea surface survey, in this method 176 units of 1064nm wavelength laser has been used by push-broom scanning and due to the airborne power limits still use 532nm wavelength single point for bathymetric survey by zigzag scanning. We establish a spatial coordinates for obtaining the WGS-84 of point cloud by using airborne POS system.

  10. The Impact of Organizational Stress and Burnout on Client Engagement

    Science.gov (United States)

    Landrum, Brittany; Knight, Danica K.; Flynn, Patrick M.

    2011-01-01

    This paper explores the impact of organizational attributes on client engagement within substance abuse treatment. Previous research has identified organizational features, including small size, accreditation, and workplace practices that impact client engagement (Broome, Flynn, Knight, & Simpson, 2007). The current study sought to explore how aspects of the work environment impact client engagement. The sample included 89 programs located in 9 states across the U.S. Work environment measures included counselor perceptions of stress, burnout, and work satisfaction at each program, while engagement measures included client ratings of participation, counseling rapport, and treatment satisfaction. Using multiple regression, tests of moderation and mediation revealed that staff stress negatively predicted client participation in treatment. Burnout was related to stress, but was not related to participation. Two additional organizational measures – workload and influence – moderated the positive relationship between staff stress and burnout. Implications for drug treatment programs are discussed. PMID:22154029

  11. Molecular detection of ‘Candidatus Phytoplasma australasia’ and ‘Ca. P. cynodontis’ in Iraq

    Directory of Open Access Journals (Sweden)

    Alkuwaiti Nawres Abdulelah Sadeq

    2017-10-01

    Full Text Available The association of phytoplasma was investigated in symptomatic tomato (Solanum lycopersicum L., eggplant (Solanum melongen L., mallow (Malva spp. and Bermuda grass (Cynodon dactylon L. plants exhibiting witches’ broom and white leaf diseases, respectively. Total DNA was extracted from tomato (n=3, eggplant (n=2, mallow (n=2 and Bermuda grass (n=8 samples. Direct polymerase chain reaction (PCR was performed using P1/P7 primer set, then PCR products were sequenced. Sequences obtained from tomato, eggplant and mallow shared 99% maximum nucleotide identity with phytoplasma belonging to subgroup 16SrII-D, and resulted therefore ‘Candidatus Phytoplasma australasia’-related. Sequences obtained from Bermuda grass showed 100% maximum nucleotide identity to 16SrXIV-A subgroup and were ‘Ca. P. cynodontis’-related. The study presents the first molecular confirmation and sequence data of presence of ‘Ca. P. australasia’ and ‘Ca. P. cynodontis’ in Iraq.

  12. Backthinned TDI CCD image sensor design and performance for the Pleiades high resolution Earth observation satellites

    Science.gov (United States)

    Materne, A.; Bardoux, A.; Geoffray, H.; Tournier, T.; Kubik, P.; Morris, D.; Wallace, I.; Renard, C.

    2017-11-01

    The PLEIADES-HR Earth observing satellites, under CNES development, combine a 0.7m resolution panchromatic channel, and a multispectral channel allowing a 2.8 m resolution, in 4 spectral bands. The 2 satellites will be placed on a sun-synchronous orbit at an altitude of 695 km. The camera operates in push broom mode, providing images across a 20 km swath. This paper focuses on the specifications, design and performance of the TDI detectors developed by e2v technologies under CNES contract for the panchromatic channel. Design drivers, derived from the mission and satellite requirements, architecture of the sensor and measurement results for key performances of the first prototypes are presented.

  13. Cytisus scoparius (Fam. Fabaceae in southern Brazil - first step of an invasion process?

    Directory of Open Access Journals (Sweden)

    Rodrigo León Cordero

    2016-03-01

    Full Text Available The occurrence of Scotch broom Cytisus scoparius (L. Link (Fabaceae, is reported for the first time in Brazil. The species has been registered in the species-rich Campos Sulinos grasslands, in the Campos de Cima da Serra, and in the Serra do Sudeste. Naturalizing populations were frequently formed in natural habitats near to human settlements, where prevailing land uses and disturbances facilitate dispersal and establishment. The plant is an invasive species that has globally caused significant damage to biodiversity and economic losses. In Brazil, the species has a strong potential for spreading into a wide range of ecosystems. The Atlantic Forest biome and part of the Pampa biome, together known as the Campos Sulinos, represent optimal areas for the species. Features of the observed populations and recommendations for management are presented.

  14. Comparisons of remotely sensed and model-simulated soil moisture over a heterogenous watershed

    International Nuclear Information System (INIS)

    Lin, D.S.; Wood, E.F.; Troch, P.A.; Mancini, M.; Jackson, T.J.

    1994-01-01

    Soil moisture estimates from a distributed hydrologic model and two microwave airborne sensors (Push Broom Microwave Radiometer and Synthetic Aperture Radar) are compared with ground measurements on two different scales, using data collected during afield experiment over a 7.4-km 2 heterogeneous watershed located in central Pennsylvania. It is found that both microwave sensors and the hydrologic model successfully reflect the temporal variation of soil moisture. Watershed-averaged soil moistures estimated by the microwave sensors are in good agreement with ground measurements. The hydrologic model initialized by stream flow records yields estimates that are wetter than observations. The preliminary test of utilizing remotely sensed information as a feedback to correct the initial state of the hydrologic model shows promising results. (author)

  15. Carbon used in electrotechnology

    International Nuclear Information System (INIS)

    Coulon, M.; Reynvaan, C.; Maire, J.

    1994-01-01

    The carbon is the essential or single component of several materials. After having recalled the general properties of carbon and graphite some traditional processes of fabrication are described and some new products are studied then we tackle the applications with electric current: -electrodes in the electric piles where we use the carbon chemical inertia -coals of electric arc where we use the refractory properties and the low resistivity of graphite -Joule effect where we work on an enough wide field of material resistivity -electric fixed or sliding contacts where in addition to the refractory properties it is its unweldability which makes it indispensable particularly in the brooms for electric motors. The future is good for carbon and its compounds particularly for the new discovered fullerenes, spheric molecules of carbon, the properties of which are bad known (supraconductivity, lubrication, energy storage). 21 refs., 26 figs., 14 tab

  16. High-throughput optical system for HDES hyperspectral imager

    Science.gov (United States)

    Václavík, Jan; Melich, Radek; Pintr, Pavel; Pleštil, Jan

    2015-01-01

    Affordable, long-wave infrared hyperspectral imaging calls for use of an uncooled FPA with high-throughput optics. This paper describes the design of the optical part of a stationary hyperspectral imager in a spectral range of 7-14 um with a field of view of 20°×10°. The imager employs a push-broom method made by a scanning mirror. High throughput and a demand for simplicity and rigidity led to a fully refractive design with highly aspheric surfaces and off-axis positioning of the detector array. The design was optimized to exploit the machinability of infrared materials by the SPDT method and a simple assemblage.

  17. Carbon Fiber Reinforced Carbon Composite Valve for an Internal Combustion Engine

    Science.gov (United States)

    Rivers, H. Kevin (Inventor); Ransone, Philip O. (Inventor); Northam, G. Burton (Inventor)

    1999-01-01

    A carbon fiber reinforced carbon composite valve for internal combustion engines and the like formed of continuous carbon fibers throughout the valve's stem and head is disclosed. The valve includes braided carbon fiber material over axially aligned unidirectional carbon fibers forming a valve stem; the braided and unidirectional carbon fibers being broomed out at one end of the valve stem forming the shape of the valve head; the valve-shaped structure being densified and rigidized with a matrix of carbon containing discontinuous carbon fibers: and the finished valve being treated to resist oxidation. Also disclosed is a carbon matrix plug containing continuous and discontinuous carbon fibers and forming a net-shape valve head acting as a mandrel over which the unidirectional and braided carbon fibers are formed according to textile processes. Also disclosed are various preform valves and processes for making finished and preform carbon fiber reinforced carbon composite valves.

  18. TcCYPR04, a Cacao Papain-Like Cysteine-Protease Detected in Senescent and Necrotic Tissues Interacts with a Cystatin TcCYS4.

    Science.gov (United States)

    Cardoso, Thyago Hermylly Santana; Freitas, Ana Camila Oliveira; Andrade, Bruno Silva; Sousa, Aurizangela Oliveira de; Santiago, André da Silva; Koop, Daniela Martins; Gramacho, Karina Peres; Alvim, Fátima Cerqueira; Micheli, Fabienne; Pirovani, Carlos Priminho

    2015-01-01

    The interaction amongst papain-like cysteine-proteases (PLCP) and their substrates and inhibitors, such as cystatins, can be perceived as part of the molecular battlefield in plant-pathogen interaction. In cacao, four cystatins were identified and characterized by our group. We identified 448 proteases in cacao genome, whereof 134 were cysteine-proteases. We expressed in Escherichia coli a PLCP from cacao, named TcCYSPR04. Immunoblottings with anti-TcCYSPR04 exhibited protein increases during leaf development. Additional isoforms of TcCYSPR04 appeared in senescent leaves and cacao tissues infected by Moniliophthora perniciosa during the transition from the biotrophic to the saprophytic phase. TcCYSPR04 was induced in the apoplastic fluid of Catongo and TSH1188 cacao genotypes, susceptible and resistant to M. perniciosa, respectively, but greater intensity and additional isoforms were observed in TSH1188. The fungal protein MpNEP induced PLCP isoform expression in tobacco leaves, according to the cross reaction with anti-TcCYSPR04. Several protein isoforms were detected at 72 hours after treatment with MpNEP. We captured an active PLCP from cacao tissues, using a recombinant cacao cystatin immobilized in CNBr-Sepharose. Mass spectrometry showed that this protein corresponds to TcCYSPR04. A homology modeling was obtained for both proteins. In order to become active, TcCYSPR04 needs to lose its inhibitory domain. Molecular docking showed the physical-chemical complementarities of the interaction between the cacao enzyme and its inhibitor. We propose that TcCYSPR04 and its interactions with cacao cystatins are involved in the senescence and necrosis events related to witches' broom symptoms. This molecular interaction may be the target for future interventions to control witches' broom disease.

  19. In-Depth Transcriptome Sequencing of Mexican Lime Trees Infected with Candidatus Phytoplasma aurantifolia.

    Science.gov (United States)

    Mardi, Mohsen; Karimi Farsad, Laleh; Gharechahi, Javad; Salekdeh, Ghasem Hosseini

    2015-01-01

    Witches' broom disease of acid lime greatly affects the production of Mexican lime in Iran. It is caused by a phytoplasma (Candidatus Phytoplasma aurantifolia). However, the molecular mechanisms that underlie phytoplasma pathogenicity and the mode of interactions with host plants are largely unknown. Here, high-throughput transcriptome sequencing was conducted to explore gene expression signatures associated with phytoplasma infection in Mexican lime trees. We assembled 78,185 unique transcript sequences (unigenes) with an average length of 530 nt. Of these, 41,805 (53.4%) were annotated against the NCBI non-redundant (nr) protein database using a BLASTx search (e-value ≤ 1e-5). When the abundances of unigenes in healthy and infected plants were compared, 2,805 transcripts showed significant differences (false discovery rate ≤ 0.001 and log2 ratio ≥ 1.5). These differentially expressed genes (DEGs) were significantly enriched in 43 KEGG metabolic and regulatory pathways. The up-regulated DEGs were mainly categorized into pathways with possible implication in plant-pathogen interaction, including cell wall biogenesis and degradation, sucrose metabolism, secondary metabolism, hormone biosynthesis and signalling, amino acid and lipid metabolism, while down-regulated DEGs were predominantly enriched in ubiquitin proteolysis and oxidative phosphorylation pathways. Our analysis provides novel insight into the molecular pathways that are deregulated during the host-pathogen interaction in Mexican lime trees infected by phytoplasma. The findings can be valuable for unravelling the molecular mechanisms of plant-phytoplasma interactions and can pave the way for engineering lime trees with resistance to witches' broom disease.

  20. Genetic Parameters and the Impact of Off-Types for Theobroma cacao L. in a Breeding Program in Brazil

    Science.gov (United States)

    DuVal, Ashley; Gezan, Salvador A.; Mustiga, Guiliana; Stack, Conrad; Marelli, Jean-Philippe; Chaparro, José; Livingstone, Donald; Royaert, Stefan; Motamayor, Juan C.

    2017-01-01

    Breeding programs of cacao (Theobroma cacao L.) trees share the many challenges of breeding long-living perennial crops, and genetic progress is further constrained by both the limited understanding of the inheritance of complex traits and the prevalence of technical issues, such as mislabeled individuals (off-types). To better understand the genetic architecture of cacao, in this study, 13 years of phenotypic data collected from four progeny trials in Bahia, Brazil were analyzed jointly in a multisite analysis. Three separate analyses (multisite, single site with and without off-types) were performed to estimate genetic parameters from statistical models fitted on nine important agronomic traits (yield, seed index, pod index, % healthy pods, % pods infected with witches broom, % of pods other loss, vegetative brooms, diameter, and tree height). Genetic parameters were estimated along with variance components and heritabilities from the multisite analysis, and a trial was fingerprinted with low-density SNP markers to determine the impact of off-types on estimations. Heritabilities ranged from 0.37 to 0.64 for yield and its components and from 0.03 to 0.16 for disease resistance traits. A weighted index was used to make selections for clonal evaluation, and breeding values estimated for the parental selection and estimation of genetic gain. The impact of off-types to breeding progress in cacao was assessed for the first time. Even when present at <5% of the total population, off-types altered selections by 48%, and impacted heritability estimations for all nine of the traits analyzed, including a 41% difference in estimated heritability for yield. These results show that in a mixed model analysis, even a low level of pedigree error can significantly alter estimations of genetic parameters and selections in a breeding program. PMID:29250097

  1. Association mapping of seed and disease resistance traits in Theobroma cacao L.

    Science.gov (United States)

    Motilal, Lambert A; Zhang, Dapeng; Mischke, Sue; Meinhardt, Lyndel W; Boccara, Michel; Fouet, Olivier; Lanaud, Claire; Umaharan, Pathmanathan

    2016-12-01

    Microsatellite and single nucleotide polymorphism markers that could be used in marker assisted breeding of cacao were identified for number of filled seeds, black pod resistance and witches' broom disease resistance. An association mapping approach was employed to identify markers for seed number and resistance to black pod and witches' broom disease (WBD) in cacao (Theobroma cacao L.). Ninety-five microsatellites (SSRs) and 775 single nucleotide polymorphisms (SNPs) were assessed on 483 unique trees in the International Cocoa Genebank Trinidad (ICGT). Linkage disequilibrium (LD) and association mapping studies were conducted to identify markers to tag the phenotypic traits. Decay of LD occurred over an average 9.3 cM for chromosomes 1-9 and 2.5 cM for chromosome 10. Marker/trait associations were generally identified based on general linear models (GLMs) that incorporated principal components from molecular information on relatedness factor. Seven markers (mTcCIR 8, 66, 126, 212; TcSNP368, 697, 1370) on chromosomes 1 and 9 were identified for number of filled seeds (NSEED). A single marker was found for black pod resistance (mTcCIR280) on chromosome 3, whereas six markers on chromosomes 4, 5, 6, 8, and 10 were detected for WBD (mTcCIR91, 183; TcSNP375, 720, 1230 and 1374). It is expected that this association mapping study in cacao would contribute to the knowledge of the genetic determinism of cocoa traits and that the markers identified herein would prove useful in marker assisted breeding of cacao.

  2. Metals in pond sediments as archives of anthropogenic activities: a study in response to health concerns

    International Nuclear Information System (INIS)

    Graney, Joseph R.; Eriksen, Timothy M.

    2004-01-01

    An environmental geochemistry approach was applied in response to health concerns about present day and past exposure to pollutants within Broome County, New York by determining historical records of anthropogenic activities as preserved in sediment cores. Sediment was collected from a stormwater retention pond adjacent to a warehouse complex in the urban community of Hillcrest as well as from 3 other ponds in rural locations in Broome County. Metal concentrations and decay products of 210 Pb and 137 Cs were measured to determine the timing of source specific differences in the distribution of metals in the sediment cores. Concentrations of Zn, Pb, Ni, Cu, Cr, Cd and As were elevated in the retention pond sediments when compared to sediment from other locations. Topography influenced atmospheric transport and deposition of pollutants within incised river valleys and enhanced runoff from impervious surfaces within an urban watershed contributed to the elevated metal concentrations at Hillcrest. Temporal changes in Pb deposition within retention pond sediment mimic the rise and fall in use of leaded gasoline. Arsenic concentrations decreased following placement of emission controls on nearby coal-fired power plant sources. Superimposed over the temporal trends of Pb and As are co-varying Zn, Ni, Cu, Cr and Cd concentrations; a suite of metals commonly used in metal plating processes by local industries. Analysis of sediment in stormwater retention ponds in other urban areas may provide opportunities for detailed records of pollution history to be obtained in many communities. Residents in urban communities located in incised river valley locations similar to Hillcrest may be particularly prone to enhanced exposure to metals from anthropogenic sources

  3. Research and implementation of simulation for TDICCD remote sensing in vibration of optical axis

    Science.gov (United States)

    Liu, Zhi-hong; Kang, Xiao-jun; Lin, Zhe; Song, Li

    2013-12-01

    During the exposure time, the charge transfer speed in the push-broom direction and the line-by-lines canning speed of the sensor are required to match each other strictly for a space-borne TDICCD push-broom camera. However, as attitude disturbance of satellite and vibration of camera are inevitable, it is impossible to eliminate the speed mismatch, which will make the signal of different targets overlay each other and result in a decline of image resolution. The effects of velocity mismatch will be visually observed and analyzed by simulating the degradation of image quality caused by the vibration of the optical axis, and it is significant for the evaluation of image quality and design of the image restoration algorithm. How to give a model in time domain and space domain during the imaging time is the problem needed to be solved firstly. As vibration information for simulation is usually given by a continuous curve, the pixels of original image matrix and sensor matrix are discrete, as a result, they cannot always match each other well. The effect of simulation will also be influenced by the discrete sampling in integration time. In conclusion, it is quite significant for improving simulation accuracy and efficiency to give an appropriate discrete modeling and simulation method. The paper analyses discretization schemes in time domain and space domain and presents a method to simulate the quality of image of the optical system in the vibration of the line of sight, which is based on the principle of TDICCD sensor. The gray value of pixels in sensor matrix is obtained by a weighted arithmetic, which solves the problem of pixels dismatch. The result which compared with the experiment of hardware test indicate that this simulation system performances well in accuracy and reliability.

  4. Chromosome sizes of phytoplasmas composing major phylogenetic groups and subgroups.

    Science.gov (United States)

    Marcone, C; Neimark, H; Ragozzino, A; Lauer, U; Seemüller, E

    1999-09-01

    ABSTRACT Chromosome sizes of 71 phytoplasmas belonging to 12 major phylogenetic groups including several of the aster yellows subgroups were estimated from electrophoretic mobilities of full-length chromosomes in pulsed-field gels. Considerable variation in genome size, from 660 to 1,130 kilobases (kb), was observed among aster yellows phytoplasmas. Chromosome size heterogeneity was also observed in the stolbur phytoplasma group (range 860 to 1,350 kb); in this group, isolate STOLF contains the largest chromosome found in a phytoplasma to date. A wide range of chromosome sizes, from 670 to 1,075 kb, was also identified in the X-disease group. The other phytoplasmas examined, which included members of the apple proliferation, Italian alfalfa witches' broom, faba bean phyllody, pigeon pea witches' broom, sugarcane white leaf, Bermuda grass white leaf, ash yellows, clover proliferation, and elm yellows groups, all have chromosomes smaller than 1 megabase, and the size ranges within each of these groups is narrower than in the aster yellows, stolbur, and X-disease groups. The smallest chromosome, approximately 530 kb, was found in two Bermuda grass white leaf phytoplasma isolates. This not only is the smallest mollicute chromosome found to date, but also is the smallest chromosome known for any cell. More than one large DNA band was observed in several phytoplasma preparations. Possible explanations for the occurrence of more than one band may be infection of the host plant by different phytoplasmas, the presence of more than one chromosome in the same organism, or the presence of large extrachromosomal DNA elements.

  5. Temporal Patterns in the Abundance and Species Composition of Spiders on Host Plants of the Invasive Moth Epiphyas postvittana (Lepidoptera: Tortricidae).

    Science.gov (United States)

    Hogg, Brian N; Mills, Nicholas J; Daane, Kent M

    2017-06-01

    Generalist predators such as spiders may help mitigate the spread and impact of exotic herbivores. The lack of prey specificity and long generation times of spiders may allow them to persist when pests are scarce, and to limit the growth of pest populations before they reach damaging levels. We examined whether resident spiders are likely to play a role in maintaining populations of the invasive light brown apple moth, Epiphyas postvittana (Walker) (Lepidoptera: Tortricidae), below outbreak levels in California. We surveyed the spider community on two E. postvittana host plants, the ornamental Australian tea tree, Leptospermum laevigatum, and the weed French broom, Genista monspessulana, to characterize spider and larval E. postvittana abundance and spider species composition throughout the year. Spider densities and species composition showed slight seasonal changes. Spiders were present during periods of high and low E. postvittana abundance. Anyphaenid hunting spiders, Anyphaena aperta Banks in Australian tea tree and Anyphaena pacifica Banks in French broom, dominated spider species composition at four of five sampled sites, and underwent only slight seasonal variation in abundance. Adult A. aperta were rare at all times of the year, suggesting that high mortality among juvenile A. aperta limits the potential of this species as a predator of E. postvittana. Nevertheless, the continued presence of spiders throughout the year indicates that the resident spider community is likely to play a key role in reducing E. postvittana populations in California. Published by Oxford University Press on behalf of Entomological Society of America 2017. This work is written by US Government employees and is in the public domain in the US.

  6. Trichoderma ROLE IN AGROFORESTRY-CACAOTAL SYSTEMS AS AN ANTAGONAL AGENT

    Directory of Open Access Journals (Sweden)

    Úrsula del Carmen López-Ferrer

    2017-05-01

    Full Text Available Agricultural and cocoa agroforestry systems are important for food production and biodiversity conservation. Among this diversity there is a group of fungi of the genus Trichoderma that present antagonistic effects against phytopathogens and this action can be used as a form of biological control of plant pathogens. In the agroforestry-cacao system the diseases with the highest frequency and with the greatest impact on cocoa production (Theobroma cacao are black rot (Phytophthora spp., Broom broom (Moniliophthora perniciosa and moniliasis (Moniliophthora roreri. The objective of this work was to perform an analysis of the main theoretical and practical aspects about the genus Trichoderma and its role in agriculture as an antagonistic agent. One of the microscopic features in the delimitation of the genus, especially by the presence of structures called phalid. The antagonistic mechanisms used by Trichoderma spp. Are described as competition, antibiosis and mycoparasitism. Mycoparasitism is having a relevance on the implications of extracellular enzymes such as chitinases, cellulases, β-1-3-glucanases and proteases that lyse or digest the walls of fungi, Moniliophthora roreri disease. This fungus can inhibit the growth of other fungi and bacteria by producing several volatile and non-volatile secondary metabolites. On the other hand, it participates in the production of regulators of growth and stimulation of the division, differentiation and cellular growth in the plant by the elicitor agent. Trichoderma species that are commercialized for biological control, growth promoter and biofertilizer are T. viride, T. polysporum and T. harzianum. The T. virens and T. harzianum species are most used for the antagonistic control of M. roreri, Phytophthora spp., and M. perniciosa in agroforestry-cacao systems (Theobroma cacao L. with optimal results to the inhibitory effect for these diseases.

  7. [Poisonous plants: An ongoing problem].

    Science.gov (United States)

    Martínez Monseny, A; Martínez Sánchez, L; Margarit Soler, A; Trenchs Sainz de la Maza, V; Luaces Cubells, C

    2015-05-01

    A medical visit for plant ingestion is rare in the pediatric emergency services but may involve a high toxicity. The botanical toxicology training of health staff is often very limited, and it can be difficult to make a diagnosis or decide on the appropriate treatment. To study the epidemiological and clinical characteristics of poisoning due to plant ingestion in order to increase the knowledge of the health professional. A descriptive retrospective study was conducted on patients seen in a pediatric emergency department after the ingestion of plant substances from January 2008 to December 2012. During the period of study, 18 patients had ingested possible toxic plants. In 14 cases, it was considered to be potentially toxic: broom, oleander, mistletoe, butcher's-broom, and vulgar bean (2), Jerusalem tomato, castor (2), Jimson weed, potus, marijuana, and mushrooms with digestive toxicity (2). Among the potentially toxic cases, the ingestion was accidental in 10 patients, 2 cases were classed as infantile mistreatment, 1 case had recreational intention, and another one suicidal intentions. The ingestion of oleander, castor and Jimson weed had major toxicity. The potential gravity of the ingestion of plant substances and the variety of the exposure mechanism requires the pediatrician to bear in mind this possibility, and to be prepared for its diagnosis and management. Specific preventive information measures need to be designed for the families and for the regulation of toxic plants in playgrounds. Copyright © 2014 Asociación Española de Pediatría. Published by Elsevier España, S.L.U. All rights reserved.

  8. The Role of Infragravity Waves in Near-Bed Cross-Shore Sediment Flux in the Breaker Zone

    Directory of Open Access Journals (Sweden)

    Samantha Kularatne

    2014-08-01

    Full Text Available Results from a series of field experiments, conducted to investigate the influence of infragravity waves (from wave groups, ripple type and location relative to the breaker line on cross-shore suspended sediment flux close to the sea bed in nearshore environments, are presented. The field data were collected from Cable Beach (Broome and Mullaloo Beach in Western Australia and Chilaw in Sri Lanka. These beaches experience different incident wave, tidal and morphological conditions, with Cable Beach having a 10-m spring tidal range, whilst the other two beaches have tidal ranges <1.0 m. Measurements included simultaneous records of surface elevation, two-dimensional horizontal current velocities and suspended sediment concentrations, together with half-hourly observations of the seabed topography. Although most of the data sets were obtained just outside of the surf zone, a few results from inside of the surf zone were also included. A significant correlation between wave groups and suspended sediment concentration was found at all of the measurement sites, either with or without bed ripples. The direction and magnitude of cross-shore suspended sediment flux varied with location with respect to the breaker line; however, other parameters, such as bed ripples and velocity skewness, could have influenced this result. In Broome, where the measurement location with respect to the breaker line varied with the tidal cycle, the cross-shore sediment flux due to swell waves was shoreward inside and just outside of the surf zone and seaward farther offshore of the breaker line. Further, sediment flux due to swell waves was onshore when the seabed was flat and offshore over post-vortex ripples. Sediment flux due to swell waves was onshore when the normalised velocity skewness towards the shore was high (positive; the flux was offshore when the skewness was lower, but positive, suggesting the influence of other parameters, such as ripples and grain size. The

  9. Diversification of Fijian halictine bees: insights into a recent island radiation.

    Science.gov (United States)

    Groom, Scott V C; Stevens, Mark I; Schwarz, Michael P

    2013-09-01

    Although bees form a key pollinator suite for flowering plants, very few studies have examined the evolutionary radiation of non-domesticated bees over human time-scales. This is surprising given the importance of bees for crop pollination and the effect of humans in transforming ecosystems via agriculture. In the Pacific, where the bee fauna appears depauperate, their importance as pollinators is not clear, particularly in Fiji where species diversity is even lower than neighbouring archipelagos. Here we explore the radiation of halictine bees in Fiji using phylogenetic analyses of mtDNA COI sequence data. Our analyses indicate the existence of several 'deep' clades whose divergences are close to the crown node, along with a highly derived 'broom' clade showing very high haplotype diversity, and mostly limited to low-lying agricultural regions. This derived clade is very abundant, whereas the more basal clades were relatively rare. Although nearly all haplotype diversity in Fijian Homalictus comprises synonymous substitutions, a small number of amino acid changes are associated with the major clades, including the hyper-diverse clade. Analyses of haplotype lineage accumulation show a steep increase in selectively neutral COI haplotypes corresponding to the emergence of this 'broom' clade. We explore three possible scenarios for this dramatic increase: (i) a key change in adaptedness to the environment, (ii) a large-scale extinction event, or (iii) a dramatic increase in suitable habitats leading to rapid population expansion. Using estimated mutation rates of mitochondrial DNA in other invertebrates, we argue that Homalictus first colonised the Fijian archipelago in the middle-late Pleistocene, and the rapid accumulation of haplotypes in the hyper-diverse clade occurred in the Holocene, but prior to recorded human presence in the Fijian region. Our results indicate that bees have not been important pollinators of Fijian ecosystems until very recent times. Post

  10. Prevalence and management of familial hypercholesterolaemia in patients with acute coronary syndromes.

    Science.gov (United States)

    Nanchen, David; Gencer, Baris; Auer, Reto; Räber, Lorenz; Stefanini, Giulio G; Klingenberg, Roland; Schmied, Christian M; Cornuz, Jacques; Muller, Olivier; Vogt, Pierre; Jüni, Peter; Matter, Christian M; Windecker, Stephan; Lüscher, Thomas F; Mach, François; Rodondi, Nicolas

    2015-09-21

    We aimed to assess the prevalence and management of clinical familial hypercholesterolaemia (FH) among patients with acute coronary syndrome (ACS). We studied 4778 patients with ACS from a multi-centre cohort study in Switzerland. Based on personal and familial history of premature cardiovascular disease and LDL-cholesterol levels, two validated algorithms for diagnosis of clinical FH were used: the Dutch Lipid Clinic Network algorithm to assess possible (score 3-5 points) or probable/definite FH (>5 points), and the Simon Broome Register algorithm to assess possible FH. At the time of hospitalization for ACS, 1.6% had probable/definite FH [95% confidence interval (CI) 1.3-2.0%, n = 78] and 17.8% possible FH (95% CI 16.8-18.9%, n = 852), respectively, according to the Dutch Lipid Clinic algorithm. The Simon Broome algorithm identified 5.4% (95% CI 4.8-6.1%, n = 259) patients with possible FH. Among 1451 young patients with premature ACS, the Dutch Lipid Clinic algorithm identified 70 (4.8%, 95% CI 3.8-6.1%) patients with probable/definite FH, and 684 (47.1%, 95% CI 44.6-49.7%) patients had possible FH. Excluding patients with secondary causes of dyslipidaemia such as alcohol consumption, acute renal failure, or hyperglycaemia did not change prevalence. One year after ACS, among 69 survivors with probable/definite FH and available follow-up information, 64.7% were using high-dose statins, 69.0% had decreased LDL-cholesterol from at least 50, and 4.6% had LDL-cholesterol ≤1.8 mmol/L. A phenotypic diagnosis of possible FH is common in patients hospitalized with ACS, particularly among those with premature ACS. Optimizing long-term lipid treatment of patients with FH after ACS is required. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2015. For permissions please email: journals.permissions@oup.com.

  11. UrtheCast: The System of Systems for Dynamic EO Monitoring Content

    International Nuclear Information System (INIS)

    Spyropoulos, N.

    2015-01-01

    UrtheCast is a multinational industrial initiative that tasks, downloads, processes and commercially exploits a medium resolution multispectral sensor and high-resolution wide area motion colorful video camera. UrtheCast's Earth Observation imaging system includes a pair of multispectral color cameras installed on the ISS. The High-Resolution Camera (HRC-Iris) is mounted on a pointing platform and captures 1 m-class high-definition (HD), full color motion imagery of areas measuring approximately 5.5x3.6 km 2 . The nadir pointing, push-broom Medium- Resolution Camera (MRC-Theia) produces a continuous ribbon of 4-channel, multispectral 6 m-class imagery. The acquired data are downlinked to a global network of antennas and backhauled to the UrtheCast cloud-based processing system and dissemination services. The resulting imagery and video are streamed in near-real time to the UrtheCast web platform or delivered to customers as special order products. UrtheCast daily MRC collection capability is ∼29 million km 2 while the HRC capacity is envisaged to generate approximately 2.5 terabytes of data per day, the equivalent of about 270 full resolution ∼90 second movies. The UrtheCast new Generation cameras include a dual Optical sensor (video and pushbroom focal planes) and dual-band (X and L) Synthetic Aperture Radar payload. Video will be of half-metre colour (0.40 m after super-imposition) and push-broom will be 1 m of 6-band multispectral. SAR payload will simultaneously record in both L and X bands, with the L-band in full quad pole (HH, HV, VH, VV, at 5 m) and the X-band in single pole (HH or VV, at 1.5 m or at <1 m in spotlight mode). The new system will be installed at NASA's Node 3 segment in late 2016. ISS is flying at 400 km, orbiting the earth 15 times/day and covering areas fallen into a geographic zone from 51.5 degrees north to 51.5 degrees south. (author)

  12. Multi-spectral CCD camera system for ocean water color and seacoast observation

    Science.gov (United States)

    Zhu, Min; Chen, Shiping; Wu, Yanlin; Huang, Qiaolin; Jin, Weiqi

    2001-10-01

    One of the earth observing instruments on HY-1 Satellite which will be launched in 2001, the multi-spectral CCD camera system, is developed by Beijing Institute of Space Mechanics & Electricity (BISME), Chinese Academy of Space Technology (CAST). In 798 km orbit, the system can provide images with 250 m ground resolution and a swath of 500 km. It is mainly used for coast zone dynamic mapping and oceanic watercolor monitoring, which include the pollution of offshore and coast zone, plant cover, watercolor, ice, terrain underwater, suspended sediment, mudflat, soil and vapor gross. The multi- spectral camera system is composed of four monocolor CCD cameras, which are line array-based, 'push-broom' scanning cameras, and responding for four spectral bands. The camera system adapts view field registration; that is, each camera scans the same region at the same moment. Each of them contains optics, focal plane assembly, electrical circuit, installation structure, calibration system, thermal control and so on. The primary features on the camera system are: (1) Offset of the central wavelength is better than 5 nm; (2) Degree of polarization is less than 0.5%; (3) Signal-to-noise ratio is about 1000; (4) Dynamic range is better than 2000:1; (5) Registration precision is better than 0.3 pixel; (6) Quantization value is 12 bit.

  13. HIGH RESOLUTION AIRBORNE LASER SCANNING AND HYPERSPECTRAL IMAGING WITH A SMALL UAV PLATFORM

    Directory of Open Access Journals (Sweden)

    M. Gallay

    2016-06-01

    Full Text Available The capabilities of unmanned airborne systems (UAS have become diverse with the recent development of lightweight remote sensing instruments. In this paper, we demonstrate our custom integration of the state-of-the-art technologies within an unmanned aerial platform capable of high-resolution and high-accuracy laser scanning, hyperspectral imaging, and photographic imaging. The technological solution comprises the latest development of a completely autonomous, unmanned helicopter by Aeroscout, the Scout B1-100 UAV helicopter. The helicopter is powered by a gasoline two-stroke engine and it allows for integrating 18 kg of a customized payload unit. The whole system is modular providing flexibility of payload options, which comprises the main advantage of the UAS. The UAS integrates two kinds of payloads which can be altered. Both payloads integrate a GPS/IMU with a dual GPS antenna configuration provided by OXTS for accurate navigation and position measurements during the data acquisition. The first payload comprises a VUX-1 laser scanner by RIEGL and a Sony A6000 E-Mount photo camera. The second payload for hyperspectral scanning integrates a push-broom imager AISA KESTREL 10 by SPECIM. The UAS was designed for research of various aspects of landscape dynamics (landslides, erosion, flooding, or phenology in high spectral and spatial resolution.

  14. High-Resolution Transcript Profiling of the Atypical Biotrophic Interaction between Theobroma cacao and the Fungal Pathogen Moniliophthora perniciosa[C][W][OPEN

    Science.gov (United States)

    Teixeira, Paulo José Pereira Lima; Thomazella, Daniela Paula de Toledo; Reis, Osvaldo; do Prado, Paula Favoretti Vital; do Rio, Maria Carolina Scatolin; Fiorin, Gabriel Lorencini; José, Juliana; Costa, Gustavo Gilson Lacerda; Negri, Victor Augusti; Mondego, Jorge Maurício Costa; Mieczkowski, Piotr; Pereira, Gonçalo Amarante Guimarães

    2014-01-01

    Witches’ broom disease (WBD), caused by the hemibiotrophic fungus Moniliophthora perniciosa, is one of the most devastating diseases of Theobroma cacao, the chocolate tree. In contrast to other hemibiotrophic interactions, the WBD biotrophic stage lasts for months and is responsible for the most distinctive symptoms of the disease, which comprise drastic morphological changes in the infected shoots. Here, we used the dual RNA-seq approach to simultaneously assess the transcriptomes of cacao and M. perniciosa during their peculiar biotrophic interaction. Infection with M. perniciosa triggers massive metabolic reprogramming in the diseased tissues. Although apparently vigorous, the infected shoots are energetically expensive structures characterized by the induction of ineffective defense responses and by a clear carbon deprivation signature. Remarkably, the infection culminates in the establishment of a senescence process in the host, which signals the end of the WBD biotrophic stage. We analyzed the pathogen’s transcriptome in unprecedented detail and thereby characterized the fungal nutritional and infection strategies during WBD and identified putative virulence effectors. Interestingly, M. perniciosa biotrophic mycelia develop as long-term parasites that orchestrate changes in plant metabolism to increase the availability of soluble nutrients before plant death. Collectively, our results provide unique insight into an intriguing tropical disease and advance our understanding of the development of (hemi)biotrophic plant-pathogen interactions. PMID:25371547

  15. Novel receptor-like kinases in cacao contain PR-1 extracellular domains.

    Science.gov (United States)

    Teixeira, Paulo José Pereira Lima; Costa, Gustavo Gilson Lacerda; Fiorin, Gabriel Lorencini; Pereira, Gonçalo Amarante Guimarães; Mondego, Jorge Maurício Costa

    2013-08-01

    Members of the pathogenesis-related protein 1 (PR-1) family are well-known markers of plant defence responses, forming part of the arsenal of the secreted proteins produced on pathogen recognition. Here, we report the identification of two cacao (Theobroma cacao L.) PR-1s that are fused to transmembrane regions and serine/threonine kinase domains, in a manner characteristic of receptor-like kinases (RLKs). These proteins (TcPR-1f and TcPR-1g) were named PR-1 receptor kinases (PR-1RKs). Phylogenetic analysis of RLKs and PR-1 proteins from cacao indicated that PR-1RKs originated from a fusion between sequences encoding PR-1 and the kinase domain of a LecRLK (Lectin Receptor-Like Kinase). Retrotransposition marks surround TcPR-1f, suggesting that retrotransposition was involved in the origin of PR-1RKs. Genes with a similar domain architecture to cacao PR-1RKs were found in rice (Oryza sativa), barrel medic (Medicago truncatula) and a nonphototrophic bacterium (Herpetosiphon aurantiacus). However, their kinase domains differed from those found in LecRLKs, indicating the occurrence of convergent evolution. TcPR-1g expression was up-regulated in the biotrophic stage of witches' broom disease, suggesting a role for PR-1RKs during cacao defence responses. We hypothesize that PR-1RKs transduce a defence signal by interacting with a PR-1 ligand. © 2013 BSPP AND JOHN WILEY & SONS LTD.

  16. High-resolution transcript profiling of the atypical biotrophic interaction between Theobroma cacao and the fungal pathogen Moniliophthora perniciosa.

    Science.gov (United States)

    Teixeira, Paulo José Pereira Lima; Thomazella, Daniela Paula de Toledo; Reis, Osvaldo; do Prado, Paula Favoretti Vital; do Rio, Maria Carolina Scatolin; Fiorin, Gabriel Lorencini; José, Juliana; Costa, Gustavo Gilson Lacerda; Negri, Victor Augusti; Mondego, Jorge Maurício Costa; Mieczkowski, Piotr; Pereira, Gonçalo Amarante Guimarães

    2014-11-01

    Witches' broom disease (WBD), caused by the hemibiotrophic fungus Moniliophthora perniciosa, is one of the most devastating diseases of Theobroma cacao, the chocolate tree. In contrast to other hemibiotrophic interactions, the WBD biotrophic stage lasts for months and is responsible for the most distinctive symptoms of the disease, which comprise drastic morphological changes in the infected shoots. Here, we used the dual RNA-seq approach to simultaneously assess the transcriptomes of cacao and M. perniciosa during their peculiar biotrophic interaction. Infection with M. perniciosa triggers massive metabolic reprogramming in the diseased tissues. Although apparently vigorous, the infected shoots are energetically expensive structures characterized by the induction of ineffective defense responses and by a clear carbon deprivation signature. Remarkably, the infection culminates in the establishment of a senescence process in the host, which signals the end of the WBD biotrophic stage. We analyzed the pathogen's transcriptome in unprecedented detail and thereby characterized the fungal nutritional and infection strategies during WBD and identified putative virulence effectors. Interestingly, M. perniciosa biotrophic mycelia develop as long-term parasites that orchestrate changes in plant metabolism to increase the availability of soluble nutrients before plant death. Collectively, our results provide unique insight into an intriguing tropical disease and advance our understanding of the development of (hemi)biotrophic plant-pathogen interactions. © 2014 American Society of Plant Biologists. All rights reserved.

  17. Patterns of hand preference for pairs of actions and the classification of handedness.

    Science.gov (United States)

    Annett, Marian

    2009-08-01

    Pairs of actions such as write x throw and throw x racquet were examined for items of the Annett hand preference questionnaire (AHPQ). Right (R) and left (L) responses were described for frequencies of RR, RL, LR, and LL pairings (write x throw etc.) in a large representative combined sample with the aim of discovering the distribution over the population as a whole. The frequencies of RL pairings varied significantly over the different item pairs but the frequencies of LR pairings were fairly constant. An important difference was found between primary actions (originally write, throw, racquet, match, toothbrush, hammer with the later addition of scissors for right-handers) and non-primary actions (needle and thread, broom, spade, dealing playing cards, and unscrewing the lid of a jar). For primary actions, there were similar numbers of right and left writers using the 'other' hand. For non-primary actions more right-handers used the left hand than for primary actions but more left-handers did not use the right hand. That is, different frequencies of response to primary versus non-primary actions were found for right-handers but not for left-handers. The pattern of findings was repeated for a corresponding analysis of left-handed throwing x AHPQ actions. The findings have implications for the classification of hand preferences and for analyses of the nature of hand skill.

  18. A S-cysteine conjugate, precursor of aroma of White Sauvignon

    Directory of Open Access Journals (Sweden)

    Takatoshi Tominaga

    1995-12-01

    Full Text Available 4-mercapto-4-methylpentan-2-one (4-MMP, a strongly odorant compound responsible for the « boxtree » or « broom plant » odour of the Sauvignon wines, can be enzymaticaly released in vitro from an odourless must extract. The enzyme source used is a cell-free extract of the gastrointestinal bacterium Eubacterium limosum. This crude preparation exhibits a cysteine β-lyase activity which requires the presence of pyridoxal phosphate. The release of 4-MMP is inhibited when the substrate is previously treated with N-hydroxysuccimide acetate which reacts with a primary amine. The same bacterial extract is also able to release 4-MMP, pyruvic acid and ammonium, from S-(4-méthylpentan-2-one-L-cysteine. On the other hand, the cleavage of S-(4-méthylpentan-2-oneD,L-homocysteine and S-(4-méthylpentan-2-one- glutathione is very limited. These results suggest that the precursor of 4-MMP in Sauvignon must is a S-cysteine conjugate. Such an aroma precursor in grapes or in other fruits has never been round berore.

  19. Maternity care: a narrative overview of what women expect across their care continuum.

    Science.gov (United States)

    Clark, Kim; Beatty, Shelley; Reibel, Tracy

    2015-04-01

    to provide a narrative overview of the values schema underpinning women׳s expectations of public maternity-care services using an episodes-of-care framework. focus-group discussions and in-depth interviews were undertaken with Western Australian women who had opted for public maternity care to determine the values schema apparent in their expectations of their care. public maternity-care services in metropolitan (i.e. Armadale, Osborne Park and Rockingham) and regional (i.e. Broome, Geraldton, Bunbury) Western Australia. women interviewed were found to have consistent values schema underpinning their maternity-care expectations and evaluations. the current study suggests that while women׳s choices and experiences of maternity care may differ on a range of dimensions, the values schema underlying their care expectations and subsequent evaluations are similar. The study findings resonate with past Australian research regarding women׳s expectations of public maternity care, but complement it by providing a coherent narrative of core underpinning stage-specific values schema. These may assist maternity-care policy makers, practitioners and researchers seeking to better understand and comprehensively respond to women׳s maternity-care expectations. Copyright © 2015 Elsevier Ltd. All rights reserved.

  20. CONTROL DE FUMAGINA (Capnodium mangiferae Cooke & Brown CON BIOFUNGICIDAS EN HOJAS Y FRUTOS DE MANGO “MANILA”

    Directory of Open Access Journals (Sweden)

    Andres Rebolledo-Martinez

    2013-11-01

    Full Text Available La fumagina (Capnodium mangiferae Cooke & Broome es una de las enfermedades más importantes en México, después de la antracnosis (Colletotrichum gloeosporioides Penz. y la roña (Elsinoe mangiferae Bitanc. & Jenkins, que afecta el rendimiento y la apariencia de frutos de mango. Se evaluó el efecto de siete fungicidas orgánicos, uno químico, el método de embolsado de frutos y un testigo en el control de fumagina en hojas y frutos de mango “Manila”, en Veracruz, México. Los resultados mostraron que los biofungicidas Bio hcaz 3.5, Bio fyb 1.5, Fungicus ph 4 y Fungicus ph 8 alcanzaron valores del 95 % de hojas en las categorías sano y ligero (daños inferiores del 5 %. El porcentaje de frutos sanos fue de 98 % para el embolsado, 82 % para el Benomil, 80 % para Sunset 3 y 78 % para Sulfocop 4 y Bio fyb 1.5. Bio fyb 1.5 mostró buen control de la fumagina en hoja y frutos. La aplicación de productos orgánicos no influyó en rendimiento y calidad de frutos.

  1. Chemical variation in Piper aduncum and biological properties of its dillapiole-rich essential oil.

    Science.gov (United States)

    de Almeida, Roseli R P; Souto, Raimundo N P; Bastos, Cleber N; da Silva, Milton H L; Maia, José G S

    2009-09-01

    The essential oils of the specimens of Piper aduncum that occur in deforested areas of Brazilian Amazon, North Brazil, are rich in dillapiole (35-90%), a derivative of phenylpropene, to which are attributed biological properties. On the other hand, the oils of the specimens with occurrence in the Atlantic Forest, and Northeastern and Southeastern Brazil, do not contain dillapiole, but only terpene compounds such as (E)-nerolidol and linalool. One specimen existing in the Amazon was hydrodistilled. The obtained oil was fractioned on a silica chromatographic column, resulting in fractions rich in dillapiole (95.0-98.9%) utilized for analyses by GC and GC/MS, structural characterization by NMR, confirmation of their biological properties, and to obtain the isomer isodillapiole. Dillapiole showed a fungicide action against the fungus Clinipellis perniciosa (witches' broom) by inhibition of its basidiospores, in concentrations ranging from 0.6 to 1.0 ppm. The larvicide and insecticide actions of dillapiole were tested against the larvae and the adult insects of Anopheles marajoara and Aedes aegypti (malaria and dengue mosquitoes), resulting in mortality of the larvae (48 h, 100%) at a concentration of 100 ppm, and mortality of the insects (30 min, 100%) at a concentration of 600 ppm. The isomeric isodillapiole showed no significant activity in the same biological tests.

  2. Faculty-Student Caring Interaction in Nursing Education: An Integrative Review

    Directory of Open Access Journals (Sweden)

    Maryam Salehian

    2017-09-01

    Full Text Available Introduction: Faculty- student caring relationship in nursing education has been offered as enhancing students’ learning experiences to care , desire to care for others and self-actu­alization. This review therefore was carried out to analyze faculty-student caring interactions in nursing education. Methods: This concept analysis of caring in the nursing education was conducted based on Broom methodology of integrative review. The literature was consisted of two books from two known theorists, and 47 relevant articles. They retrieved from English data bases including MEDLINE, CINAHL, ERIC, SCOPUS, and SID, with based on the keywords of caring and "nursing education", during the period 2005-2014. Results: Caring in nursing education refers to faculty-student interaction based on ethical and human values. The development of values and moral principles in education, flexibility in educational processes, application of objective patterns in learning, and dynamism in educational processes are identified as caring concept attributes in teaching-learning process. This requires environmental support, constant human relationship, and knowing. Internalization of values, achieving self-esteem, peace, and towards human evolution were the main achievements of the concept of caring in nursing education. Conclusion: The details obtained from the dimensions of "caring" concept in this study could be utilized by nursing education researchers and designers in order to develop content and structure for educational programs.

  3. Spatial and temporal distribution of cotton squares and small cotton bolls fallen on ground after damage by boll weevil and the efficiency of the equipment used to collect them

    Directory of Open Access Journals (Sweden)

    Carlos Alberto Domingues da Silva

    Full Text Available ABSTRACT: In this study, we determined the spatial and temporal distribution of fallen cotton squares and small cotton bolls fallen damaged by boll weevil and the efficiency and time interval of the equipment used to collect cotton samples. Spatial and temporal distribution of cotton squares and small cotton bolls fallen on the soil damaged by boll weevil among cotton rows was determined in an experimental design of randomized blocks in a factorial arrangement of 4x3, represented by soil surface tracks located at 1-11cm, 12-22cm, 23-33cm, and 34-44cm away from the planting row of cotton plants 70, 85, and 100 days of age. Efficiency and collection time interval of the cotton samples fallen on the soil infested by boll weevil by plastic rakes that were straight or fan-shaped, big broom, collector instrument model CNPA and aspirator of leaves ‘Trapp’ were determined in randomized block design with five treatments, 10 repetitions for each. Results demonstrated that the collection of cotton samples must be performed with greater attention to soil strips located below the cotton top projection and aspirator ‘Trapp’ of leaves was more appropriate for the operation as it used less time of collection with similar efficiency to other available equipment.

  4. Cacao diseases: a global perspective from an industry point of view.

    Science.gov (United States)

    Hebbar, Prakash K

    2007-12-01

    ABSTRACT Diseases of cacao, Theobroma cacao, account for losses of more than 30% of the potential crop. These losses have caused a steady decline in production and a reduction in bean quality in almost all the cacao-producing areas in the world, especially in small-holder farms in Latin America and West Africa. The most significant diseases are witches' broom, caused by Moniliophthora perniciosa, which occurs mainly in South America; frosty pod rot, caused by M. roreri, which occurs mainly in Central and northern South America; and black pod disease, caused by several species of Phytophthora, which are distributed throughout the tropics. In view of the threat that these diseases pose to the sustainability of the cacao crop, Mars Inc. and their industry partners have funded collaborative research involving cacao research institutes and governmental and nongovernmental agencies. The objective of this global initiative is to develop short- to medium-term, low-cost, environmentally friendly disease-management strategies until disease tolerant varieties are widely available. These include good farming practices, biological control and the rational or minimal use of chemicals that could be used for integrated pest management (IPM). Farmer field schools are used to get these technologies to growers. This paper describes some of the key collaborative partners and projects that are underway in South America and West Africa.

  5. Cacao diseases: important threats to chocolate production worldwide.

    Science.gov (United States)

    Ploetz, Randy C

    2007-12-01

    ABSTRACT Theobroma cacao, cacao, is an ancient, neotropical domesticate. It is now grown throughout the humid, lowland tropics and is the basis of a multibillion dollar confectionary trade. Diverse diseases impact production of the crop. They reduce yields by ca. 20%, but could cause far greater losses if certain highly damaging diseases were to become more widely distributed. Among the most potentially dangerous of these diseases are frosty pod, caused by Moniliophthora roreri, and witches' broom, caused by M. perniciosa (previously Crinipellis perniciosa). These two diseases occur only in the Western Hemisphere, and severe losses would follow their introduction to West Africa and Asia, where ca. 86% of all cacao production occurs. Elsewhere, Cacao swollen shoot virus and the damaging black pod agent, Phytophthora megakarya, are found in Western Africa; whereas vascular streak dieback, caused by Oncobasidium theobromae, is present only in Asia. Breeding programs are challenged by minimal resistance to some of the diseases. Progress that has been made is threatened by the "emergence" of other serious diseases, such as Ceratocystis wilt (Ceratocystis cacaofunesta). During this symposium, new insights are discussed on the biology, origins, pathology and phylogeny of the pathogens; as well as the biological, chemical and genetic management of the diseases that they cause.

  6. Frosty pod of cacao: a disease with a limited geographic range but unlimited potential for damage.

    Science.gov (United States)

    Phillips-Mora, W; Wilkinson, M J

    2007-12-01

    ABSTRACT Moniliophthora roreri, the cause of frosty pod rot (FP), is a specialized fungal pathogen (family Marasmiaceae) that invades only actively growing pods of cacao, Theobroma cacao, and related species of Theobroma and Herrania. FP damages pods and the commercially important seeds that some of these species produce. M. roreri was confined to northwestern South America until the 1950s. Its appearance in Panama in 1956 signaled a change in its geographic distribution. Now, it is found in 11 countries in tropical America. The fungus is currently in an active dispersal phase, possibly due to an increase in human-mediated spread. FP is more destructive than black pod (Phytophthora spp.) and more dangerous and difficult to control than witches' broom, caused by Moniliophthora (Crinipellis) perniciosa. The aggressiveness of M. roreri, its capacity to survive different environmental conditions, its rapid natural dispersal, its propensity for man-mediated dispersal, and the susceptibility of most commercial cacao genotypes, all indicate that FP presents a substantial threat to cacao cultivation worldwide.

  7. Development of a marker assisted selection program for cacao.

    Science.gov (United States)

    Schnell, R J; Kuhn, D N; Brown, J S; Olano, C T; Phillips-Mora, W; Amores, F M; Motamayor, J C

    2007-12-01

    ABSTRACT Production of cacao in tropical America has been severely affected by fungal pathogens causing diseases known as witches' broom (WB, caused by Moniliophthora perniciosa), frosty pod (FP, caused by M. roreri) and black pod (BP, caused by Phytophthora spp.). BP is pan-tropical and causes losses in all producing areas. WB is found in South America and parts of the Caribbean, while FP is found in Central America and parts of South America. Together, these diseases were responsible for over 700 million US dollars in losses in 2001 (4). Commercial cacao production in West Africa and South Asia are not yet affected by WB and FP, but cacao grown in these regions is susceptible to both. With the goal of providing new disease resistant cultivars the USDA-ARS and Mars, Inc. have developed a marker assisted selection (MAS) program. Quantitative trait loci have been identified for resistance to WB, FP, and BP. The potential usefulness of these markers in identifying resistant individuals has been confirmed in an experimental F(1) family in Ecuador.

  8. Analysis of the ergosterol biosynthesis pathway cloning, molecular characterization and phylogeny of lanosterol 14α-demethylase (ERG11 gene of Moniliophthora perniciosa

    Directory of Open Access Journals (Sweden)

    Geruza de Oliveira Ceita

    2014-12-01

    Full Text Available The phytopathogenic fungus Moniliophthora perniciosa (Stahel Aime & Philips-Mora, causal agent of witches' broom disease of cocoa, causes countless damage to cocoa production in Brazil. Molecular studies have attempted to identify genes that play important roles in fungal survival and virulence. In this study, sequences deposited in the M. perniciosa Genome Sequencing Project database were analyzed to identify potential biological targets. For the first time, the ergosterol biosynthetic pathway in M. perniciosa was studied and the lanosterol 14α-demethylase gene (ERG11 that encodes the main enzyme of this pathway and is a target for fungicides was cloned, characterized molecularly and its phylogeny analyzed. ERG11 genomic DNA and cDNA were characterized and sequence analysis of the ERG11 protein identified highly conserved domains typical of this enzyme, such as SRS1, SRS4, EXXR and the heme-binding region (HBR. Comparison of the protein sequences and phylogenetic analysis revealed that the M. perniciosa enzyme was most closely related to that of Coprinopsis cinerea.

  9. Effectiveness of long-term (twelve months nonsurgical weight loss interventions for obese women with polycystic ovary syndrome: a systematic review

    Directory of Open Access Journals (Sweden)

    Fiona Nicholson

    2010-11-01

    Full Text Available Fiona Nicholson1, Catherine Rolland1, John Broom1, John Love21Centre for Obesity Research and Epidemiology, Robert Gordon University, Aberdeen, Scotland; 2School of Applied Social Studies, Faculty of Health and Social Care, The Robert Gordon University, Aberdeen, ScotlandAbstract: Polycystic ovary syndrome (PCOS affects 2%–26% of women of reproductive age and is often accompanied by obesity. Modest weight loss reduces health risks and ameliorates effects of the syndrome. Weight loss interventions are mainly of short duration and have limited success. A systematic review of the literature was carried out to assess the efficacy of long-term (12 months, nonsurgical weight loss interventions for women with PCOS. Fifteen databases were searched, resulting in eight papers that met the search criteria. Comparison of results and meta-analysis was difficult due to heterogeneity of studies. Behavioral components of interventions were poorly described, and compliance was difficult to ascertain. The results suggested that the inclusion of a lifestyle component improves outcomes, but protocols must be clearly described to maintain study validity and to identify successful behavioral strategies.Keywords: obesity, polycystic ovary syndrome, weight loss 

  10. Hyperspectral imaging of colonic polyps in vivo (Conference Presentation)

    Science.gov (United States)

    Clancy, Neil T.; Elson, Daniel S.; Teare, Julian

    2017-02-01

    Standard endoscopic tools restrict clinicians to making subjective visual assessments of lesions detected in the bowel, with classification results depending strongly on experience level and training. Histological examination of resected tissue remains the diagnostic gold standard, meaning that all detected lesions are routinely removed. This subjects the patient to risk of polypectomy-related injury, and places significant workload and economic burdens on the hospital. An objective endoscopic classification method would allow hyperplastic polyps, with no malignant potential, to be left in situ, or low grade adenomas to be resected and discarded without histology. A miniature multimodal flexible endoscope is proposed to obtain hyperspectral reflectance and dual excitation autofluorescence information from polyps in vivo. This is placed inside the working channel of a conventional colonoscope, with the external scanning and detection optics on a bedside trolley. A blue and violet laser diode pair excite endogenous fluorophores in the respiration chain, while the colonoscope's xenon light source provides broadband white light for diffuse reflectance measurements. A push-broom HSI scanner collects the hypercube. System characterisation experiments are presented, defining resolution limits as well as acquisition settings for optimal spectral, spatial and temporal performance. The first in vivo results in human subjects are presented, demonstrating the clinical utility of the device. The optical properties (reflectance and autofluorescence) of imaged polyps are quantified and compared to the histologically-confirmed tissue type as well as the clinician's visual assessment. Further clinical studies will allow construction of a full robust training dataset for development of classification schemes.

  11. Analysis of Volcanic Processes at Kilauea Volcano Using an Airborne Imaging Interferometer

    Science.gov (United States)

    Wright, R.; Lucey, P. G.; Garbeil, H.; Pilger, E. J.; Wood, M.; Honniball, C.; Gabrieli, A.

    2017-12-01

    Measurements of thermal emittance in tens of narrow, contiguous wavebands, allow for the derivation of laboratory quality spectra remotely, from which the chemical composition and physical properties of targets can be determined. The TIRCIS instrument (Thermal Infra-Red Compact Imaging Spectrometer), developed at the Hawaii Institute of Geophysics and Planetology, uses a Fabry-Perot interferometer, an uncooled microbolometer array, and push-broom scanning to acquire hyperspectral image data in the 8-14 micron spectral range. Radiometric calibration is provided by blackbody targets while spectral calibration is achieved using monochromatic light sources. The instrument has a mass of instrument was launched onboard a 55 kg microsatellite as part of the ORS-4 mission in October 2015.) Over the wavelength interval of up to 50 spectral samples are possible, and signal-to-noise ratios of 200-1600:1 have been measured for targets with temperatures covering those of interest to Earth scientists. In this presentation we will discuss how the instrument works, its spectro-radiometric performance (and performance model), and show laboratory measurements that illustrate how the instrument would be able to quantify thermal emission from active lavas, the mineralogy of volcanic rocks, and the composition of volcanic gas plumes. Finally, we will present data obtained during test flights over Kilauea volcano, Hawaii.

  12. Ricoseius loxocheles (Acari: Phytoseiidae) is not a predator of false spider mite on coffee crops: What does it eat?

    Science.gov (United States)

    Vacacela Ajila, Henry E; Ferreira, João A M; Colares, Felipe; Oliveira, Cleber M; Bernardo, Ana Maria G; Venzon, Madelaine; Pallini, Angelo

    2018-01-01

    Ricoseius loxocheles (De Leon) (Acari: Phytoseiidae) is often found in coffee crops and is known to feed on coffee leaf rust, Hemileia vastatrix Berkeley and Broome (Uredinales). As the occurrence of coffee leaf rust is limited primarily to the rainy season, the mite may use other food sources to survive during the periods of low pathogen prevalence. It is well known that phytoseiid mites can survive on a variety of food sources, such as herbivorous mites, fungi and pollen. We evaluated the ability of R. loxocheles to survive and reproduce on a diet of Brevipalpus phoenicis Geijskes (Acari: Tenuipalpidae), cattail pollen (Typha spp.), clover rust (Puccinia oxalidis), bee pollen (Santa Bárbara ® dehydrated pollen, Santa Bárbara, MG, Brazil) and coffee leaf rust. Ricoseius loxocheles did not survive or reproduce on any B. phoenicis stages tested (egg, larva, adult). The survival and oviposition of R. loxocheles were directly affected by the presence of coffee rust urediniospores, but not by the presence of the prey. Survival and oviposition of the phytoseiid were similar when fed cattail pollen, clover rust and coffee leaf rust but was lower when fed bee pollen. Our results show that R. loxocheles is not a predator of B. phoenicis but it is able to utilize other resources besides coffee leaf rust.

  13. Sentinel-5/UVNS instrument: the principle ability of a slit homogenizer to reduce scene contrast for earth observation spectrometer

    Science.gov (United States)

    Meister, Ch.; Keim, C.; Irizar, J.; Bauer, M.

    2017-09-01

    Sentinel-5/UVNS 1 is an Earth observation spectrometer system that is operating in nadir looking push broom mode from a low Earth orbit. While having a wide across-track field of view (≈ 2700 km) it covers approximately 7 km at nadir in flight direction during one dwell. However a high contrast in the scene in along track may lead to disturbance of the Instrument Spectral Response Function (ISRF) and with this a variation of measured spectrum. In order to reduce the effect of scene contrast along track, instead of a spectrometer slit two mirrors are introduced, in between which the light path is extended such as a one dimensional wave guide. The entrance length across track however is wide enough to let light pass unchanged. This new concept is called Slit Homogenizer (SH) within theSentinel-5 project. The entrance of the SH is placed on the image plane of the preceding op- tics. The exit of the SH represents the object plane of the subsequent spectrometer in the along track (spectral) direction. This article proposes a simulation model of a SH together with a preced- ing generic optics based on scalar diffraction theory. The model is used to evaluate quantitatively the homogenizing ability of the device. Some parameters in the discussed examples are taken from Sentinel-5/UVNS instrument but the model and its application is not limited to that mission.

  14. Agricultural, domestic and handicraft folk uses of plants in the Tyrrhenian sector of Basilicata (Italy

    Directory of Open Access Journals (Sweden)

    Guarrera Paolo

    2005-07-01

    Full Text Available Abstract Background Research was carried out into agricultural and domestic-handicraft uses in folk traditions in the Tyrrhenian sector of the Basilicata region (southern Italy, as it is typically representative of ethnobotanical applications in the Mediterranean area. From the point of view of furnishing a botanical support for the study of local "material culture" data was collected through field interviews of 49 informants, most of whom were farmers. Results The taxa cited are 60, belonging to 32 botanical families, of which 18 are employed for agricultural uses and 51 for domestic-handicraft folk uses. Data show a diffuse use of plants for many purposes, both in agricultural (present uses 14%; past uses 1% and for domestic-handicraft use (present uses 40%; past uses 45%; most of the latter are now in decline. Conclusion 60 data look uncommon or typical of the places studied. Some domestic-handicraft folk uses are typical of southern Italy (e.g. the use of Ampelodesmos mauritanicus for making ties, ropes, torches, baskets or that of Acer neapolitanum for several uses. Other uses (e.g. that of Inula viscosa and Calamintha nepeta for peculiar brooms, and of Origanum heracleoticum for dyeing wool red are previously unpublished.

  15. Isolation of a Novel Fusogenic Orthoreovirus from Eucampsipoda africana Bat Flies in South Africa

    Directory of Open Access Journals (Sweden)

    Petrus Jansen van Vuren

    2016-02-01

    Full Text Available We report on the isolation of a novel fusogenic orthoreovirus from bat flies (Eucampsipoda africana associated with Egyptian fruit bats (Rousettus aegyptiacus collected in South Africa. Complete sequences of the ten dsRNA genome segments of the virus, tentatively named Mahlapitsi virus (MAHLV, were determined. Phylogenetic analysis places this virus into a distinct clade with Baboon orthoreovirus, Bush viper reovirus and the bat-associated Broome virus. All genome segments of MAHLV contain a 5' terminal sequence (5'-GGUCA that is unique to all currently described viruses of the genus. The smallest genome segment is bicistronic encoding for a 14 kDa protein similar to p14 membrane fusion protein of Bush viper reovirus and an 18 kDa protein similar to p16 non-structural protein of Baboon orthoreovirus. This is the first report on isolation of an orthoreovirus from an arthropod host associated with bats, and phylogenetic and sequence data suggests that MAHLV constitutes a new species within the Orthoreovirus genus.

  16. Neem (Azadirachta indica a. Juss) components: candidates for the control of Crinipellis perniciosa and Phytophthora ssp.

    Science.gov (United States)

    de Rezende Ramos, Alessandra; Lüdke Falcão, Loeni; Salviano Barbosa, Guilherme; Helena Marcellino, Lucilia; Silvano Gander, Eugen

    2007-01-01

    Witches' broom and pod rot are the two most devastating diseases of cocoa in South America and Africa, respectively. Their control by means of phytosanitation and chemical fungicides is labor-intensive, costly and, in many cases, environmentally undesirable. Therefore efforts are made in order to identify alternative, environmentally safe and cost-efficient methods for the control of these pathogens. Promising candidates are components of the neem tree (Azadirachta indica), that have been used for centuries in Asia as insecticides, fungicides, anticonceptionals in popular medicine. Here we report about tests on the effect of various concentrations of extracts from neem leaves on growth of mycelia of Crinipellis and Phytophthora and on germination of spores of Crinipellis. We show a 35% growth reduction of mycelia of Phytophthora on neem leaf extract media, whereas growth of mycelia of Crinipellis was not affected, even at the highest concentration of neem leaf extracts used (35%). However, the most dramatic effect of neem leaf extracts is observed on Crinipellis spore germination, here the extracts (20-35%) reduced germination almost completely. Based on these results, we believe that the neem tree might be a source for the production, on small and medium scale, of an effective and cheap formulation for the control of Crinipellis and Phytophthora.

  17. Vegetation classification and quatification by satellite image processing. A case study in north Portugal

    Energy Technology Data Exchange (ETDEWEB)

    Aranha, J.T. [Dept. Florestal, UTAD, 5001-801 Vila Real (Portugal); Viana, H.F. [Instituto Politecnico de Viseu, Escola Superior Agraria, Viseu (Portugal); Rodrigues, R. [Bioflag - Consulting - Santo Tirso (Portugal)

    2008-07-01

    The expected increase in Forest Biomass demand for energy production leads to derive expeditious and non-expensive techniques in order to classify vegetal land cover and evaluate the available biomass like to be harvested. Satellite image processing and classification, combined to field work, is a suitable tool to achieve these aims. A vegetation index (NDVI) was created by means of a Landsat TM image, from 2006, manipulation, in order to create a general vegetation map. Then, the same image was submitted to a supervised classification process in order to produce a land cover map (overall accuracy of 85%). In a second stage, they were collected NDVI values for each sampling plot, in order to update the database previous developed with data collected within forestry stands and shrubland. This data merging enabled to transform general vegetation map into available biomass within forestry stands and shrubland. The results showed a range of values from 0.25 up to 6.00 dry ton./ha for recent and former burnt areas recovered by Pinus pinaster (maritime pine) young trees and from 2.00 up to 9.00 dry ton./ha for recent and former burnt areas recovered by shrubs (e.g. genista or broom).

  18. Evaluation of shrub and tree species used for revegetating copper mine wastes in the south-western United States. [Dodonea viscosa (L. ) Jacq. , Baccharis sarothroides Gray, Cerdicium microphyllum Torr. , and Nicotiana glauca Grah

    Energy Technology Data Exchange (ETDEWEB)

    Norem, M A; Day, A D; Ludeke, K L

    1982-12-01

    The revegetation work begun in 1970 at Cyprus Pima Mine, an open pit copper mine south-west of Tucson, Arizona, was evaluated to determine the effects of slope aspect and mining waste material on plant survival and growth. Only one shrub, Dodonea viscosa (L.) Jacq. (hopbush), survived on the east slope. Baccharis sarothroides Gray (desert broom) was prolific on the north aspect. Cerdicium microphyllum Torr. (palo verde) survived best on the east slope and Nicotiana glauca Grah. (desert tobacco) survived only on the north slope. The survival of the other tree species was not affected by slope aspect. Slope exposure did not affect tree size, except for Eucalyptus microtheca Muell. (tiny capsule eucalyptus) which grew larger on the north slope. E. rostrata Schlechtend (red gum eucalyptus) grew taller in overburden than in tailing on the east slope. Differences in soil material within each slope exposure did not significantly affect growth of the other tree species. In semi-arid regions, such as south-western Arizona, even slight differences in available moisture may determine the survival of a plant species in the area. (Refs. 11).

  19. Démocratie d’en-bas ou « démocratie de la rue » ?

    DEFF Research Database (Denmark)

    Bojsen, Heidi; Boni, Seydou

    2017-01-01

    for genoprettelsen af retsstaten i Burkina Faso: Hvilke praksis finder sted i bevægelsen? Hvordan kan man definere hvad der er dens succeser eller nederlag i de former for dialog, der finder sted? Den anvendte metode trække både på selv-etnografi (Anderson 2008) og endo-metodologi (Olivier de Sardan) samt den...... bevægelsen blevet en reference og en aktør, som andre interessenter i samfundet og magtspillet henvender sig til. Banégas, Brisset-Foucault og Cutolo (2012) har givet flere eksempler på den voksende folkelige debat, der finder sted på offentlige steder i de afrikanske byrum, debatter og ”læringsrum”, der i...... stigende grad fremstår som alternative og komplementerende platforme til dem, som retsstaten stiller til rådigheder for borgerne gennem sine institutioner. Blandt de spor, som de tre forskere udstikker, stiller artiklen skarpt på folkelige bevægelser såsom Cititizen’s Broom, og den rolle de kan spille...

  20. Broadening the application of evolutionarily based genetic pest management.

    Science.gov (United States)

    Gould, Fred

    2008-02-01

    Insect- and tick-vectored diseases such as malaria, dengue fever, and Lyme disease cause human suffering, and current approaches for prevention are not adequate. Invasive plants and animals such as Scotch broom, zebra mussels, and gypsy moths continue to cause environmental damage and economic losses in agriculture and forestry. Rodents transmit diseases and cause major pre- and postharvest losses, especially in less affluent countries. Each of these problems might benefit from the developing field of Genetic Pest Management that is conceptually based on principles of evolutionary biology. This article briefly describes the history of this field, new molecular tools in this field, and potential applications of those tools. There will be a need for evolutionary biologists to interact with researchers and practitioners in a variety of other fields to determine the most appropriate targets for genetic pest management, the most appropriate methods for specific targets, and the potential of natural selection to diminish the effectiveness of genetic pest management. In addition to producing environmentally sustainable pest management solutions, research efforts in this area could lead to new insights about the evolution of selfish genetic elements in natural systems and will provide students with the opportunity to develop a more sophisticated understanding of the role of evolutionary biology in solving societal problems.

  1. Growth and energy yield when cultivating various energy crops on farming soil. Tillvaext och energiutbyte vid odling av olika energigroedor paa jordbruksmark

    Energy Technology Data Exchange (ETDEWEB)

    Thoerner, L.

    1988-03-01

    In four fields in the south of Sweden different energy crops were tested. In all trials sugar beet, barley, alfalfa, corn, sunflower and quickgrowing species of Salix (energy forest) were grown. In some of the trials broome-grass, potatoes and winter wheat were tested. One trial also included marrow-stem kale, Jerusalem artichoke and a hybride of J artichoke and sunflower. The purpose of the experiment was to illustrate the effect of increasing N-fertilizing and the effect of growing the crops in different climatic conditions. The yield varies between the crops. Some of the crops were harvested in different stages of development. The largest yields were noticed for sugar beet, corn, potatoes and energy forest. For these crops the yield was 11.5-14.5 tons of dry matter per hectare. The yield of potatoes was very large but it is figures for only one place with very good conditions. Barley, sunflower and alfalfa produced 8-10 tons of dry matter per hectare. The smaller yield depends on a short vegetation season for these crops. The year of establishment the energy forest produced about four tons of dry matter in the form of stem wood. When fully established the production has been 12-15 tons of dry matter per hectare and annum. The analysis of plant material indicates small divergences in the content of carbon and heat value.

  2. Cultural Explanations of Sleep Paralysis in Italy: The Pandafeche Attack and Associated Supernatural Beliefs.

    Science.gov (United States)

    Jalal, Baland; Romanelli, Andrea; Hinton, Devon E

    2015-12-01

    The current study examines cultural explanations regarding sleep paralysis (SP) in Italy. The study explores (1) whether the phenomenology of SP generates culturally specific interpretations and causal explanations and (2) what are the beliefs and local traditions associated with such cultural explanations. The participants were Italian nationals from the general population (n = 68) recruited in the region of Abruzzo, Italy. All participants had experienced at least one lifetime episode of SP. The sleep paralysis experiences and phenomenology questionnaire were orally administered to participants. We found a multilayered cultural interpretation of SP, namely the Pandafeche attack, associated with various supernatural beliefs. Thirty-eight percent of participants believed that this supernatural being, the Pandafeche-often referred to as an evil witch, sometimes as a ghost-like spirit or a terrifying humanoid cat-might have caused their SP. Twenty-four percent of all participants sensed the Pandafeche was present during their SP. Strategies to prevent Pandafeche attack included sleeping in supine position, placing a broom by the bedroom door, or putting a pile of sand by the bed. Case studies are presented to illustrate the study findings. The Pandafeche attack thus constitutes a culturally specific, supernatural interpretation of the phenomenology of SP in the Abruzzo region of Italy.

  3. Faculty-Student Caring Interaction in Nursing Education: An Integrative Review.

    Science.gov (United States)

    Salehian, Maryam; Heydari, Abbas; Aghebati, Nahid; Karimi Moonaghi, Hossein

    2017-09-01

    Introduction: Faculty- student caring relationship in nursing education has been offered as enhancing students' learning experiences to care , desire to care for others and self-actu-alization. This review therefore was carried out to analyze faculty-student caring interactions in nursing education. Methods: This concept analysis of caring in the nursing education was conducted based on Broom methodology of integrative review. The literature was consisted of two books from two known theorists, and 47 relevant articles. They retrieved from English data bases including MEDLINE, CINAHL, ERIC, SCOPUS, and SID, with based on the keywords of caring and "nursing education", during the period 2005-2014. Results: Caring in nursing education refers to faculty-student interaction based on ethical and human values. The development of values and moral principles in education, flexibility in educational processes, application of objective patterns in learning, and dynamism in educational processes are identified as caring concept attributes in teaching-learning process. This requires environmental support, constant human relationship, and knowing. Internalization of values, achieving self-esteem, peace, and towards human evolution were the main achievements of the concept of caring in nursing education. Conclusion: The details obtained from the dimensions of "caring" concept in this study could be utilized by nursing education researchers and designers in order to develop content and structure for educational programs.

  4. Medium-sized aperture camera for Earth observation

    Science.gov (United States)

    Kim, Eugene D.; Choi, Young-Wan; Kang, Myung-Seok; Kim, Ee-Eul; Yang, Ho-Soon; Rasheed, Ad. Aziz Ad.; Arshad, Ahmad Sabirin

    2017-11-01

    Satrec Initiative and ATSB have been developing a medium-sized aperture camera (MAC) for an earth observation payload on a small satellite. Developed as a push-broom type high-resolution camera, the camera has one panchromatic and four multispectral channels. The panchromatic channel has 2.5m, and multispectral channels have 5m of ground sampling distances at a nominal altitude of 685km. The 300mm-aperture Cassegrain telescope contains two aspheric mirrors and two spherical correction lenses. With a philosophy of building a simple and cost-effective camera, the mirrors incorporate no light-weighting, and the linear CCDs are mounted on a single PCB with no beam splitters. MAC is the main payload of RazakSAT to be launched in 2005. RazakSAT is a 180kg satellite including MAC, designed to provide high-resolution imagery of 20km swath width on a near equatorial orbit (NEqO). The mission objective is to demonstrate the capability of a high-resolution remote sensing satellite system on a near equatorial orbit. This paper describes the overview of the MAC and RarakSAT programmes, and presents the current development status of MAC focusing on key optical aspects of Qualification Model.

  5. Development of broomcorn varieties at Institute of Field and Vegetable Crops Novi Sad

    Directory of Open Access Journals (Sweden)

    Sikora Vladimir

    2010-01-01

    Full Text Available Broomcorn breeding program at Institute of Field and Vegetable Crops Novi Sad has been in continuation since 1952. According to the demand of broomcorn and broom producers, in several cycles during this period, five generations of breeders have exploited wealthy genetic collection and created 11 broomcorn cultivars. In the beginning, the primary target was creation of European dwarf type cultivars. This phase has resulted in three cultivars 'Bački biser', 'Neoplanta' and 'Panonija'. Next phase, which was crowned with cultivars 'Sava', 'Tisa', 'Jumak' and 'Jantar', was focused on higher yield and better quality of broomcorn brushes. Contemporary cultivars 'Reform' and 'Neoplanta plus' which preserve good agro-technological traits of former cultivars, are selected to early maturity and fiber fineness. Selection of new cultivars 'Tan Sava' and 'No. 5' was concentrated on elimination of red coloration of panicles and even earlier maturity. Newly selected inbred lines tolerant to plant diseases and with positive panicle exertion are presently tested as parental lines in experimental hybrids. .

  6. [Study of spatial stratified sampling strategy of Oncomelania hupensis snail survey based on plant abundance].

    Science.gov (United States)

    Xun-Ping, W; An, Z

    2017-07-27

    Objective To optimize and simplify the survey method of Oncomelania hupensis snails in marshland endemic regions of schistosomiasis, so as to improve the precision, efficiency and economy of the snail survey. Methods A snail sampling strategy (Spatial Sampling Scenario of Oncomelania based on Plant Abundance, SOPA) which took the plant abundance as auxiliary variable was explored and an experimental study in a 50 m×50 m plot in a marshland in the Poyang Lake region was performed. Firstly, the push broom surveyed data was stratified into 5 layers by the plant abundance data; then, the required numbers of optimal sampling points of each layer through Hammond McCullagh equation were calculated; thirdly, every sample point in the line with the Multiple Directional Interpolation (MDI) placement scheme was pinpointed; and finally, the comparison study among the outcomes of the spatial random sampling strategy, the traditional systematic sampling method, the spatial stratified sampling method, Sandwich spatial sampling and inference and SOPA was performed. Results The method (SOPA) proposed in this study had the minimal absolute error of 0.213 8; and the traditional systematic sampling method had the largest estimate, and the absolute error was 0.924 4. Conclusion The snail sampling strategy (SOPA) proposed in this study obtains the higher estimation accuracy than the other four methods.

  7. Avaliação genética de indivíduos e progênies de cupuaçuzeiro no estado do Pará e estimativas de parâmetros genéticos Genetic evaluation of individuals and progenies of Theobroma grandiflorum in the state of Pará and estimates of genetic parameters

    Directory of Open Access Journals (Sweden)

    Rafael Moysés Alves

    2008-09-01

    seleção recorrente para melhorar, gradativamente, o nível de resistência. Parece suficiente considerar na seleção apenas o número de vassouras, não sendo necessário considerar o peso. A correlação entre resistência no fruto e na inflorescência foi alta (0.84, indicando algum controle genético comum aos dois caracteres. Foram identificadas progênies superiores, simultaneamente, para produção de frutos e resistência à vassoura.This paper deals with the genotypic evaluation of Theobroma grandiflorum progenies in the Pará State for the characters number of fruits (NF in four harvests, intensity of occurrence of witch's broom disease in the inflorescences (WBI and in the fruits (WBF and weight of branches with witch's broom (WWB. Also, it presents estimates of genetic parameters that allow to infer on the genetic control and level of genetic variability in the appraised germplasm. All the characters presented considerable genetic variability, with coefficients of genetic variation varying from 27% to 88% at progenies level and from 38% to 123% at individual level. This reveals excellent possibilities for the selection in that hybrid experimental population. The estimates of individual narrow sense heritabilities, in a harvest, varied from 25% to 54% and the individual repeatabilities for NF was equal at 35%. With the four accomplished harvests the individual heritability increased to 48%, providing selective accuracy of 70%, for the individuals' selection. The gain in efficiency, when using more than five crops is practically worthless. For NF, genetic gains above 60% can be obtained with the selection of the best five individuals. Individuals with annual production of 17 fruits can be selected, value which is much more superior to the general average of 10 fruits, found in the commercial plantations. Superior genetic gains can be obtained with clone propagation of the best individuals in relation to the sexual propagation and for the best individual the

  8. Lessons Learned From Community-Based Approaches to Sodium Reduction

    Science.gov (United States)

    Kane, Heather; Strazza, Karen; Losby PhD, Jan L.; Lane, Rashon; Mugavero, Kristy; Anater, Andrea S.; Frost, Corey; Margolis, Marjorie; Hersey, James

    2017-01-01

    Purpose This article describes lessons from a Centers for Disease Control and Prevention initiative encompassing sodium reduction interventions in six communities. Design A multiple case study design was used. Setting This evaluation examined data from programs implemented in six communities located in New York (Broome County, Schenectady County, and New York City); California (Los Angeles County and Shasta County); and Kansas (Shawnee County). Subjects Participants (n = 80) included program staff, program directors, state-level staff, and partners. Measures Measures for this evaluation included challenges, facilitators, and lessons learned from implementing sodium reduction strategies. Analysis The project team conducted a document review of program materials and semi structured interviews 12 to 14 months after implementation. The team coded and analyzed data deductively and inductively. Results Five lessons for implementing community-based sodium reduction approaches emerged: (1) build relationships with partners to understand their concerns, (2) involve individuals knowledgeable about specific venues early, (3) incorporate sodium reduction efforts and messaging into broader nutrition efforts, (4) design the program to reduce sodium gradually to take into account consumer preferences and taste transitions, and (5) identify ways to address the cost of lower-sodium products. Conclusion The experiences of the six communities may assist practitioners in planning community-based sodium reduction interventions. Addressing sodium reduction using a community-based approach can foster meaningful change in dietary sodium consumption. PMID:24575726

  9. Horizontal transfer of potential mobile units in phytoplasmas.

    Science.gov (United States)

    Ku, Chuan; Lo, Wen-Sui; Kuo, Chih-Horng

    2013-09-01

    Phytoplasmas are uncultivated phytopathogenic bacteria that cause diseases in a wide range of economically important plants. Through secretion of effector proteins, they are able to manipulate their plant hosts to facilitate their multiplication and dispersal by insect vectors. The genome sequences of several phytoplasmas have been characterized to date and a group of putative composite transposons called potential mobile units (PMUs) are found in these highly reduced genomes. Recently, our team reported the genome sequence and comparative analysis of a peanut witches' broom (PnWB) phytoplasma, the first representative of the phytoplasma 16SrII group. Comparisons between the species phylogeny and the phylogenies of the PMU genes revealed that the PnWB PMU is likely to have been transferred from the 16SrI group. This indicates that PMUs are not only the DNA unit for transposition within a genome, but also for horizontal transfer among divergent phytoplasma lineages. Given the association of PMUs with effector genes, the mobility of PMUs across genomes has important implications for phytoplasma ecology and evolution.

  10. Mobile units of DNA in phytoplasma genomes.

    Science.gov (United States)

    Dickinson, Matt

    2010-09-01

    Phytoplasmas are obligate symbionts of plants and insects that are responsible for significant yield losses in diverse crops. Genome sequencing has revealed that many phytoplasma genomes appear to contain repeated genes organized in units of approximately 20 kb. These 'potential mobile units' (PMUs) resemble composite replicative transposons. PMUs contain several genes for recombination and some also contain putative 'virulence genes'. Genome alignments suggest that PMUs are involved in phytoplasma genome instability and recombination. In this edition of Molecular Microbiology, Hogenhout and colleagues report that one PMU from the aster yellows phytoplasma strain Witches' Broom (AY-WB) can exist as both a linear PMU within the chromosome and as an extrachromosomal circular form. The copy number of the circular form is much higher in the insect vector compared with the plant, and expression levels of genes present on the PMU are also higher in the insect. These observations suggest not only that this PMU could be a mobile element, but that it could also be involved in a phase-variation mechanism that allows the phytoplasma to adapt to its different hosts.

  11. Phytoplasma PMU1 exists as linear chromosomal and circular extrachromosomal elements and has enhanced expression in insect vectors compared with plant hosts.

    Science.gov (United States)

    Toruño, Tania Y; Musić, Martina Seruga; Simi, Silvia; Nicolaisen, Mogens; Hogenhout, Saskia A

    2010-09-01

    Phytoplasmas replicate intracellularly in plants and insects and are dependent on both hosts for dissemination in nature. Phytoplasmas have small genomes lacking genes for major metabolic pathways. Nevertheless, their genomes harbour multicopy gene clusters that were named potential mobile units (PMUs). PMU1 is the largest most complete repeat among the PMUs in the genome of Aster Yellows phytoplasma strain Witches' Broom (AY-WB). PMU1 is c. 20 kb in size and contains 21 genes encoding DNA replication and predicted membrane-targeted proteins. Here we show that AY-WB has a chromosomal linear PMU1 (L-PMU1) and an extrachromosomal circular PMU1 (C-PMU1). The C-PMU1 copy number was consistently higher by in average approximately fivefold in insects compared with plants and PMU1 gene expression levels were also considerably higher in insects indicating that C-PMU1 synthesis and expression are regulated. We found that the majority of AY-WB virulence genes lie on chromosomal PMU regions that have similar gene content and organization as PMU1 providing evidence that PMUs contribute to phytoplasma host adaptation and have integrated into the AY-WB chromosome. © 2010 Blackwell Publishing Ltd.

  12. Flight Test Results of the Earth Observing-1 Advanced Land Imager Advanced Land Imager

    Science.gov (United States)

    Mendenhall, Jeffrey A.; Lencioni, Donald E.; Hearn, David R.; Digenis, Constantine J.

    2002-09-01

    The Advanced Land Imager (ALI) is the primary instrument on the Earth Observing-1 spacecraft (EO-1) and was developed under NASA's New Millennium Program (NMP). The NMP mission objective is to flight-validate advanced technologies that will enable dramatic improvements in performance, cost, mass, and schedule for future, Landsat-like, Earth Science Enterprise instruments. ALI contains a number of innovative features designed to achieve this objective. These include the basic instrument architecture, which employs a push-broom data collection mode, a wide field-of-view optical design, compact multi-spectral detector arrays, non-cryogenic HgCdTe for the short wave infrared bands, silicon carbide optics, and a multi-level solar calibration technique. The sensor includes detector arrays that operate in ten bands, one panchromatic, six VNIR and three SWIR, spanning the range from 0.433 to 2.35 μm. Launched on November 21, 2000, ALI instrument performance was monitored during its first year on orbit using data collected during solar, lunar, stellar, and earth observations. This paper will provide an overview of EO-1 mission activities during this period. Additionally, the on-orbit spatial and radiometric performance of the instrument will be compared to pre-flight measurements and the temporal stability of ALI will be presented.

  13. On-orbit test results from the EO-1 Advanced Land Imager

    Science.gov (United States)

    Evans, Jenifer B.; Digenis, Constantine J.; Gibbs, Margaret D.; Hearn, David R.; Lencioni, Donald E.; Mendenhall, Jeffrey A.; Welsh, Ralph D.

    2002-01-01

    The Advanced Land Imager (ALI) is the primary instrument flown on the first Earth Observing mission (EO-1), launched on November 21, 2000. It was developed under NASA's New Millennium Program (NMP). The NMP mission objective is to flight-validate advanced technologies that will enable dramatic improvements in performance, cost, mass, and schedule for future, Landsat-like, Earth Science Enterprise instruments. ALI contains a number of innovative features designed to achieve this objective. These include the basic instrument architecture which employs a push-broom data collection mode, a wide field of view optical design, compact multi-spectral detector arrays, non-cryogenic HgCdTe for the short wave infrared bands, silicon carbide optics, and a multi-level solar calibration technique. During the first ninety days on orbit, the instrument performance was evaluated by collecting several Earth scenes and comparing them to identical scenes obtained by Landsat7. In addition, various on-orbit calibration techniques were exercised. This paper will present an overview of the EO-1 mission activities during the first ninety days on-orbit, details of the ALI instrument performance and a comparison with the ground calibration measurements.

  14. Edinburgh, the Scottish pioneers of anatomy and their lasting influence in South Africa.

    Science.gov (United States)

    Correia, J C; Wessels, Q; Vorster, W

    2013-11-01

    The history of the origin of anatomy education in South Africa is the history of an arduous journey through time. The lasting influence of Edinburgh came in the form of Robert Black Thomson. He was a student and assistant of Sir William Turner who gave rise to the first chair of anatomy and the establishment of a department at the South African College, known today as University of Cape Town. Thomson was later succeeded by Matthew Drennan, a keen anthropologist, who was revered by his students. This Scottish link prevailed over time with the appointment of Edward Philip Stibbe as the chair of anatomy at the South African School of Mines and Technology, which later became the University of the Witwatersrand. Stibbe's successor, Raymond Arthur Dart, a graduate of the University of Sydney, was trained in an anatomy department sculpted on that of Edinburgh by Professor James Thomas Wilson. Wilson's influence at the University of Sydney can be traced back to Edinburgh and William Turner through Thomas Anderson Stuart. Both Dart and Robert Broom, another Scot, were considered as Africa's wild men by the late Professor Tobias. Here, the authors explore the Scottish link and origins of anatomy pedagogy in South Africa.

  15. Enabling Searches on Wavelengths in a Hyperspectral Indices Database

    Science.gov (United States)

    Piñuela, F.; Cerra, D.; Müller, R.

    2017-10-01

    Spectral indices derived from hyperspectral reflectance measurements are powerful tools to estimate physical parameters in a non-destructive and precise way for several fields of applications, among others vegetation health analysis, coastal and deep water constituents, geology, and atmosphere composition. In the last years, several micro-hyperspectral sensors have appeared, with both full-frame and push-broom acquisition technologies, while in the near future several hyperspectral spaceborne missions are planned to be launched. This is fostering the use of hyperspectral data in basic and applied research causing a large number of spectral indices to be defined and used in various applications. Ad hoc search engines are therefore needed to retrieve the most appropriate indices for a given application. In traditional systems, query input parameters are limited to alphanumeric strings, while characteristics such as spectral range/ bandwidth are not used in any existing search engine. Such information would be relevant, as it enables an inverse type of search: given the spectral capabilities of a given sensor or a specific spectral band, find all indices which can be derived from it. This paper describes a tool which enables a search as described above, by using the central wavelength or spectral range used by a given index as a search parameter. This offers the ability to manage numeric wavelength ranges in order to select indices which work at best in a given set of wavelengths or wavelength ranges.

  16. Changes in Al and Fe associated with amorphous soil minerals over one year after a wildfire at Pico Cho Marcial (Tenerife, Canary Islands, Spain

    Directory of Open Access Journals (Sweden)

    J. Notario

    2013-05-01

    Full Text Available Amorphous-linked Al, Fe and Si were determined both in burned and unburnt soil samples after a wildfire close to Pico Cho Marcial (Tenerife, Canary Islands, Spain that affected 7.1 ha of high mountain Teide broom scrub along four successive samplings held in September 2003 (three months after the wildfire, February 2004, June 2004 and October 2004. Soils in the area are Lithic Xerorthents, with a scarcely developed AC-type profile. The chemical elements under study were extracted using selective dissolutions (0.2M acid ammonium oxalate and 0.1N sodium pyrophosphate, and determined by Atomic Absorption Spectrophotometry. The average contents of total amorphous Al (oxalate-extractable and organo-metallic complexes-bound Al (pyrophosphate extractable were significantly higher in burned samples along the study. Also, the oxalate-extractable Al varied significantly along the different samplings, and so consequently did the Alp:Alox ratio. A progressive decrease in the Al:Si ratio in allophanes was also found throughout the study period. No differences were found for oxalate-extractable Fe, either between sample groups or samplings, which was also applicable to the (Alox+0.5Feox percentage.

  17. Comparison of Spectral Characteristic between LAPAN-A3 and Sentinel-2A

    Science.gov (United States)

    Zylshal, Z.; Sari, N. M.; Nugroho, J. T.; Kushardono, D.

    2017-12-01

    Indonesian National Institute of Aeronautics and Space (LAPAN) started building its experimental microsatellite back in 2007 and finally able to launch its first microsatellite dubbed as LAPAN-A1/LAPAN-Tubsat. With the launch of LAPAN-A3/LAPAN-IPB, Indonesian experimental satellite programme hit its third generation. LAPAN-A3 is carrying multiple payloads including multispectral push-broom imager, digital matrix camera, as well as video camera. This paper aims to highlight the spectral differences between LAPAN-A3 and the well-established Sentinel-2A multispectral to investigate the potential of using LAPAN-A3 data to complement the other well-established medium resolution satellite data. Comparisons between corresponding bands and band transformations were performed over a dataset. Three areas of interest were chosen as the test sites. Linear regression and Pearson correlation coefficient were then calculated between the corresponding bands. The preliminary results showed a moderate correlation between the two sensors with Pearson correlation coefficient ranging from 0.39 to 0.65. Some issues were found regarding the radiometric quality over the whole scene of LAPAN-A3.

  18. Assessment of Useful Plants in the Catchment Area of the Proposed Ntabelanga Dam in the Eastern Cape Province, South Africa

    Directory of Open Access Journals (Sweden)

    Alfred Maroyi

    2017-01-01

    Full Text Available Background. The developmental projects, particularly construction of dams, result in permanent changes of terrestrial ecosystems through inundation. Objective. The present study was undertaken aiming at documenting useful plant species in Ntabelanga dam catchment area that will be impacted by the construction of the proposed dam. Methods. A total of 55 randomly selected quadrats were used to assess plant species diversity and composition. Participatory rural appraisal (PRA methods were used to identify useful plant species growing in the catchment area through interviews with 108 randomly selected participants. Results. A total of 197 plant species were recorded with 95 species (48.2% utilized for various purposes. Use categories included ethnoveterinary and herbal medicines (46 species, food plants (37 species, construction timber and thatching (14 species, firewood (five species, browse, live fence, and ornamental (four species each, and brooms and crafts (two species. Conclusion. This study showed that plant species play an important role in the daily life and culture of local people. The construction of Ntabelanga dam is, therefore, associated with several positive and negative impacts on plant resources which are not fully integrated into current decision-making, largely because of lack of multistakeholder dialogue on the socioeconomic issues of such an important project.

  19. Hyperspectral imager for components identification in the atmosphere

    Science.gov (United States)

    Dewandel, Jean-Luc; Beghuin, Didier; Dubois, Xavier; Antoine, Philippe

    2017-11-01

    Several applications require the identification of chemical elements during re-entry of material in the atmosphere. The materials can be from human origin or meteorites. The Automated Transfer Vehicle (ATV) re-entry has been filmed with conventional camera from airborne manual operation. In order to permit the identification of the separate elements from their glow, spectral analysis needs to be added to the video data. In a LET-SME contract with ESA, Lambda-X has built a Fourier Transform Imaging Spectrometer to permit, in a future work, to bring the technology to the readiness level required for the application. In this paper, the principles of the Fourier Transform Imaging spectroscopy are recalled, the different interferometers suitable for supporting the technique are reviewed and the selection process is explained. The final selection of the interferometer corresponds to a birefringent prism based common path shear interferometer. The design of the breadboard and its performances are presented in terms of spatial resolution, aperture, and spectral resolution. A discussion is open regarding perspective of the technique for other remote sensing applications compared to more usual push broom configurations.

  20. A sedimentological approach to refining reservoir architecture in a mature hydrocarbon province: the Brent Province, UK North Sea

    Energy Technology Data Exchange (ETDEWEB)

    Hampson, G.J.; Sixsmith, P.J.; Johnson, H.D. [Imperial College, London (United Kingdom). Dept. of Earth Science and Engineering

    2004-04-01

    Improved reservoir characterisation in the mature Brent Province of the North Sea, aimed at maximising both in-field and near-field hydrocarbon potential, requires a clearer understanding of sub-seismic stratigraphy and facies distributions. In this context, we present a regional, high-resolution sequence stratigraphic framework for the Brent Group, UK North Sea based on extensive sedimentological re-interpretation of core and wireline-log data, combined with palynostratigraphy and published literature. This framework is used to place individual reservoirs in an appropriate regional context, thus resulting in the identification of subtle sedimentological and tectono-stratigraphic features of reservoir architecture that have been previously overlooked. We emphasise the following insights gained from our regional, high-resolution sequence stratigraphic synthesis: (1) improved definition of temporal and spatial trends in deposition both within and between individual reservoirs, (2) development of regionally consistent, predictive sedimentological models for two enigmatic reservoir intervals (the Broom and Tarbert Formations), and (3) recognition of subtle local tectono-stratigraphic controls on reservoir architecture, and their links to the regional, Middle Jurassic structural evolution of the northern North Sea. We discuss the potential applications of these insights to the identification of additional exploration potential and to improved ultimate recovery. (author)

  1. Deteksi dan Identifikasi Fitoplasma yang Berasosiasi dengan Penyakit Layu Kelapa Di Pulau Derawan, Kalimantan Timur

    Directory of Open Access Journals (Sweden)

    Agus Eko Prasetyo

    2017-09-01

    Full Text Available Coconut is a major commodity in Derawan island as source of additional income for the farmers. Research was conducted to detect and identify phytoplasmas associated with coconut wilt disease in Derawan island. Coconut wilt disease was indicated by the typical symptoms, i.e.  leaf yellowing, shorten of coconut sheaths and leaves, necrosis and collapse of old leaves, and also nut fall.  The presence of phytoplasmas in phloem tissues of coconut stem was observed using fluorescence and electron microscope.  Identification of phytoplasmas was carried out by nested-PCR and sequencing of the 16S rRNA gene.  DNA fragment of phytoplasma with the size of 1.25 kbp was successfully amplified using primer pairs P1/P7, followed by primer pairs R16F2n/R16R2.  Sequence analysis of the amplified fragments showed that phytoplasma associated with coconut wilt disease in Derawan island belongs to 16SrII (witches broom phytoplasma and 16SrXI (ca. Phytoplasma oryzae groups.

  2. Penularan Fitoplasma Sapu pada Tanaman Kacang Tanah oleh Serangga Vektor Orosius argentatus dan Deteksi Molekuler dengan Teknik PCR

    Directory of Open Access Journals (Sweden)

    Tatit Sastrini

    2014-02-01

    Full Text Available Witches’ broom disease caused by phytoplasma is a very serious disease on peanut (Arachis hypogaea which may potentially lead to high yield loss. Insects are the most important agents of phytoplasma transmission in the field. The objective of this research was to examine the potential role of leafhoppers species as insect vector of phytoplasma and to determine their transmission characteristic. Two species of leafhopper i.e. O. argentatus and Empoasca sp. (both belong to Hemiptera: Cicadellidae were chosen for this study. The methodology involved were transmission study of phytoplasma by O. argentatus and Empoasca sp., and molecular detection of phytoplasma by PCR technique to confirm the association of pathogen, insect vector and symptomatic plants. The result showed that specific symptom was observed when using O. argentatus in the transmission study with number of insect as low as 1 insect per plant, whereas Empoasca sp. was not able to transmit the disease. Incubation period of phytoplasma in the host plant was affected by the number of insect, i.e. the more insect vector the shortest incubation period. The phytoplasma was successfully detected using P1/P7 primer in symptomatic plants as well as in the insect vector.Key words: Empoasca sp., leafhoppers, polymerase chain reaction

  3. Lipid class and fatty acid content of the Leptocephalus larva of tropical eels

    DEFF Research Database (Denmark)

    Deibel, D.; Parrish, C.C.; Grønkjær, P.

    2012-01-01

    :0 (23 mol%), 22:6n-3 (docosahexaenoic acid, DHA, 16 mol%), 18:0 (8.2 mol%), 20:5n-3 (eicosapentaenoic acid, EPA, 6.7 mol%), 18:1n-9 (6.4 mol%) and 16:1n-7 (6.3 mol%). The DHA:EPA ratio ranged from 2.4 to 2.9, sufficient for normal growth and development of fish larvae generally. The leptocephali had...... storage and condition of leptocephali, we determined the lipid class and fatty acid concentration of larvae collected on a cross-shelf transect off Broome, northwestern Australia. The total lipid concentration of two families and four sub-families of leptocephali ranged from 2.7 to 7.0 mg g wet weight-1......, at the low end of the few published values. Phospholipid and triacylglycerol made up ca. 63 % of the total lipid pool. The triacylglycerol:sterol ratio, an index of nutritional condition, ranged from 0.9 to 3.7, indicating that the leptocephali were in good condition. The predominant fatty acids were 16...

  4. Nighttime ionization by energetic particles at Wallops Island in the altitude region 120 to 200 km

    International Nuclear Information System (INIS)

    Voss, H.D.; Smith, L.G.

    1979-01-01

    Five Nike Apache rockets, each including an energetic particle spectrometer and an electron density-electron temperature experiment, have been launched from Wallops Island (L=2.6) near midnight under varying geomagnetic conditions. On the most recent of these (5 January 1978) an additional spectrometer with a broom magnet, and a 391.4 nm photometer were flown. The data from this flight indicate that the energetic particle flux consists predominantly of protons, neutral hydrogen and possibly other energetic nuclei. The energy spectrum becomes much softer and the flux more intense with increasing Kp for 10 0 indicating that the majority of particles are near their mirroring altitude. Ionization rates are calculated based on the measured energy spectrum and mirror height distribution. The resulting ionization rate profile is found to be nearly constant with altitude in the region 120 to 200 km. The measured energetic particle flux and calculated ionization rate from the five flights are found to vary with magnetic activity (based on the Kp and Dst indexes) in the same way as the independently derived ionization rates deduced from the electron density profile

  5. Nighttime ionization by energetic particles at Wallops Island in the altitude region 120 to 200 km

    Science.gov (United States)

    Voss, H. D.; Smith, L. G.

    1979-01-01

    Five Nike Apache rockets, each including an energetic particle spectrometer and an electron density-electron temperature experiment, have been launched from Wallops Island (L = 2.6) near midnight under varying geomagnetic conditions. On the most recent of these (5 January 1978) an additional spectrometer with a broom magnet, and a 391.4 nm photometer were flown. The data from this flight indicate that the energetic particle flux consists predominantly of protons, neutral hydrogen and possibly other energetic nuclei. The energy spectrum becomes much softer and the flux more intense with increasing Kp for 10-100 keV. The pitch angle distribution at 180 km is asymmetrical with a peak at 90 deg indicating that the majority of particles are near their mirroring altitude. Ionization rates are calculated based on the measured energy spectrum and mirror height distribution. The resulting ionization rate profile is found to be nearly constant with altitude in the region 120 to 200 km. The measured energetic particle flux and calculated ionization rate from the five flights are found to vary with magnetic activity (based on the Kp and Dst indexes) in the same way as the independently derived ionization rates deduced from the electron density profile.

  6. Development of a compressive sampling hyperspectral imager prototype

    Science.gov (United States)

    Barducci, Alessandro; Guzzi, Donatella; Lastri, Cinzia; Nardino, Vanni; Marcoionni, Paolo; Pippi, Ivan

    2013-10-01

    Compressive sensing (CS) is a new technology that investigates the chance to sample signals at a lower rate than the traditional sampling theory. The main advantage of CS is that compression takes place during the sampling phase, making possible significant savings in terms of the ADC, data storage memory, down-link bandwidth, and electrical power absorption. The CS technology could have primary importance for spaceborne missions and technology, paving the way to noteworthy reductions of payload mass, volume, and cost. On the contrary, the main CS disadvantage is made by the intensive off-line data processing necessary to obtain the desired source estimation. In this paper we summarize the CS architecture and its possible implementations for Earth observation, giving evidence of possible bottlenecks hindering this technology. CS necessarily employs a multiplexing scheme, which should produce some SNR disadvantage. Moreover, this approach would necessitate optical light modulators and 2-dim detector arrays of high frame rate. This paper describes the development of a sensor prototype at laboratory level that will be utilized for the experimental assessment of CS performance and the related reconstruction errors. The experimental test-bed adopts a push-broom imaging spectrometer, a liquid crystal plate, a standard CCD camera and a Silicon PhotoMultiplier (SiPM) matrix. The prototype is being developed within the framework of the ESA ITI-B Project titled "Hyperspectral Passive Satellite Imaging via Compressive Sensing".

  7. Lessons learned from community-based approaches to sodium reduction.

    Science.gov (United States)

    Kane, Heather; Strazza, Karen; Losby, Jan L; Lane, Rashon; Mugavero, Kristy; Anater, Andrea S; Frost, Corey; Margolis, Marjorie; Hersey, James

    2015-01-01

    This article describes lessons from a Centers for Disease Control and Prevention initiative encompassing sodium reduction interventions in six communities. A multiple case study design was used. This evaluation examined data from programs implemented in six communities located in New York (Broome County, Schenectady County, and New York City); California (Los Angeles County and Shasta County); and Kansas (Shawnee County). Participants (n = 80) included program staff, program directors, state-level staff, and partners. Measures for this evaluation included challenges, facilitators, and lessons learned from implementing sodium reduction strategies. The project team conducted a document review of program materials and semistructured interviews 12 to 14 months after implementation. The team coded and analyzed data deductively and inductively. Five lessons for implementing community-based sodium reduction approaches emerged: (1) build relationships with partners to understand their concerns, (2) involve individuals knowledgeable about specific venues early, (3) incorporate sodium reduction efforts and messaging into broader nutrition efforts, (4) design the program to reduce sodium gradually to take into account consumer preferences and taste transitions, and (5) identify ways to address the cost of lower-sodium products. The experiences of the six communities may assist practitioners in planning community-based sodium reduction interventions. Addressing sodium reduction using a community-based approach can foster meaningful change in dietary sodium consumption.

  8. Impact of a Microbial Cocktail Used as a Starter Culture on Cocoa Fermentation and Chocolate Flavor.

    Science.gov (United States)

    Magalhães da Veiga Moreira, Igor; de Figueiredo Vilela, Leonardo; da Cruz Pedroso Miguel, Maria Gabriela; Santos, Cledir; Lima, Nelson; Freitas Schwan, Rosane

    2017-05-09

    Chocolate production suffered a vast impact with the emergence of the "witches' broom" disease in cocoa plants. To recover cocoa production, many disease-resistant hybrid plants have been developed. However, some different cocoa hybrids produce cocoa beans that generate chocolate with variable quality. Fermentation of cocoa beans is a microbiological process that can be applied for the production of chocolate flavor precursors, leading to overcoming the problem of variable chocolate quality. The aim of this work was to use a cocktail of microorganisms as a starter culture on the fermentation of the ripe cocoa pods from PH15 cocoa hybrid, and evaluate its influence on the microbial communities present on the fermentative process on the compounds involved during the fermentation, and to perform the chocolate sensorial characterization. According to the results obtained, different volatile compounds were identified in fermented beans and in the chocolate produced. Bitterness was the dominant taste found in non-inoculated chocolate, while chocolate made with inoculated beans showed bitter, sweet, and cocoa tastes. 2,3-Butanediol and 2,3-dimethylpyrazine were considered as volatile compounds making the difference on the flavor of both chocolates. Saccharomyces cerevisiae UFLA CCMA 0200, Lactobacillus plantarum CCMA 0238, and Acetobacter pasteurianus CCMA 0241 are proposed as starter cultures for cocoa fermentation.

  9. Development in nursery of different clones of cupuaçu tree (Theobroma grandiflorum (Wild. Ex Spreng. Schum

    Directory of Open Access Journals (Sweden)

    D. Franciskievicz

    2013-11-01

    Full Text Available This work aimed to present the results of initial development in nursery of 4 genetic materials of cupuaçu trees, being one a material without selection (control and three clones of cupuaçu tree resistant to the fungus Moniliophthora perniciosa, causal agent of Witches' Broom. The seeds from Embrapa Amazônia Oriental (Belém - PA were put in seed bed for germination. After 25 days of seedling emergence these were transplanted in to plastic bags, arranged in a shade house (60%, and containing agricultural substrate and forest humus (1: 3. At the end of 130 days after sowing were compared the patterns of development of girth, height and relation height / girth in a randomized block design consisting of 4 treatments and 4 replicates, each replicate consisting of 16 seedlings. Results were subjected to analysis of variance (ANOVA and the averages compared by Tukey (5%. The values ​​obtained to girth not differ, presented as overall mean 5.08 mm, however in relation to height cultivar 215 (31cm excelled on the cultivar 174 (25 cm and control (23 cm, however their average not differ of material 186 (27 cm. As regards the height / girth the values ​​obtained for the control and cultivars 175, 186 and 215, were respectively, 4.6, 5.2, 5.1 and 5.9 cm / mm, being cultivar 215 different to control.

  10. ISBDD Model for Classification of Hyperspectral Remote Sensing Imagery

    Directory of Open Access Journals (Sweden)

    Na Li

    2018-03-01

    Full Text Available The diverse density (DD algorithm was proposed to handle the problem of low classification accuracy when training samples contain interference such as mixed pixels. The DD algorithm can learn a feature vector from training bags, which comprise instances (pixels. However, the feature vector learned by the DD algorithm cannot always effectively represent one type of ground cover. To handle this problem, an instance space-based diverse density (ISBDD model that employs a novel training strategy is proposed in this paper. In the ISBDD model, DD values of each pixel are computed instead of learning a feature vector, and as a result, the pixel can be classified according to its DD values. Airborne hyperspectral data collected by the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS sensor and the Push-broom Hyperspectral Imager (PHI are applied to evaluate the performance of the proposed model. Results show that the overall classification accuracy of ISBDD model on the AVIRIS and PHI images is up to 97.65% and 89.02%, respectively, while the kappa coefficient is up to 0.97 and 0.88, respectively.

  11. Focal plane AIT sequence: evolution from HRG-Spot 5 to Pleiades HR

    Science.gov (United States)

    Le Goff, Roland; Pranyies, Pascal; Toubhans, Isabelle

    2017-11-01

    Optical and geometrical image qualities of Focal Planes, for "push-broom" high resolution remote sensing satellites, require the implementation of specific means and methods for the AIT sequence. Indeed the geometric performances of the focal plane mainly axial focusing and transverse registration, are duly obtained on the basis of adjustment, setting and measurement of optical and CCD components with an accuracy of a few microns. Since the end of the 1970s, EADS-SODERN has developed a series of detection units for earth observation instruments like SPOT and Helios. And EADS-SODERN is now responsible for the development of the Pleiades High Resolution Focal Plane assembly. This paper presents the AIT sequences. We introduce all the efforts, innovative solutions and improvements made on the assembly facilities to match the technical evolutions and breakthrough of the Pleiades HR FP concept in comparison with the previous High Resolution Geometric SPOT 5 Focal Plane. The main evolution drivers are the implementation of strip filters and the realization of 400 mm continuous retinas. For Pleiades HR AIT sequence, three specific integration and measuring benches, corresponding with the different assembly stages, are used: a 3-D non-contact measurement machine for the assembly of detection module, a 3-D measurement machine for mirror integration on the main Focal Plane SiC structure, and a 3-D geometric coordinates control bench to focus detection module lines and to ensure they are well registered together.

  12. Impacts on water quality by hydraulic fracturing in Pennsylvania

    Science.gov (United States)

    Yan, B.; Stute, M.; Chillrud, S. N.; Ross, J. M.; Howarth, M.; Panettieri, R.; Saberi, P.

    2015-12-01

    Shale gas development, including drilling and hydraulic fracturing, is rapidly increasing throughout the United States and, indeed, the rest of the world. Systematic surveys of water quality both pre- and post drilling/production are sparse. To examine the impacts of shale gas production on water quality, pilot studies have been conducted in adjacent counties of western NY (Chemung, Tioga, Broome, and Delaware) and northern PA (Bradford, Susquehanna, and Wayne). These 7 counties along the border of NY and PA share similar geology and demographic compositions and have been identified as a key area to develop shale gas with the key difference that active fracking is occurring in PA but there is no fracking yet in NY. Measurements include a suite of major and trace elements, methane and its stable isotopes, noble gases and tritium for dating purposes, and the primary radioactive elements of potential concern, radon and radium. We found elevated methane levels on both sides of the border. Higher levels of major ions were observed in PA samples close to the gas wells in the valley, possibly from hydraulic fracturing activities. The lab analysis of samples collected in recently launched 100 Bottom Project is ongoing and the results will be presented in this conference.

  13. Bevalac operations update

    International Nuclear Information System (INIS)

    1991-02-01

    The Bevalac passed the recent Tiger Team assessment with flying colors, thanks to the unremitting effort of countless people over the last several months, pulling miles of cables, sending tons of ''valuable'' junk to salvage, painting, pushing brooms, writing operating procedures. It is time to look ahead now and plan for doing science again; however, it is not business as usual. The Bevalac survived, but not without changes. There are more procedures to be followed, safety appraisals to be made, training to be gone through. The primary goal is not just to get a task done, but to get it done in a safe manner according to code. If this means a delay in a run because enough time wasn't allotted for making a change in the setup, then the experiment will be delayed. Many of the obvious changes you will find the next time you come to work here are summarized in this newsletter. We will inform you of others as they are forthcoming. Also we will discuss these changes at our ''We Survived the Tigers, but hor-ellipsis'' Users' Information Meeting at the Washington APS meeting. Details are inside this report

  14. Evaluation of the effectiveness of different herbicides against a new weed Japanese brome (Bromus japonicus Houtt. in wheat crop

    Directory of Open Access Journals (Sweden)

    Muhammad Asghar

    2017-06-01

    Full Text Available A field experiment was conducted to evaluate the efficacy of different post emergence herbicides for the control of monocot weed the Japanese broom (Bromus japonicus in wheat crop. Five herbicides viz., metribuzin, isoproturon, metribuzin plus isoproturon, Atlantis and sulfosulfuron were used at their recommended doses in RCBD with three replications. The weedy check was kept as control where no herbicide was sprayed. All the herbicides were applied as post-emergence after second irrigation at 60 days after sowing the crop. The lowest weed counts per m2 (0.583 and highest percent of weed mortality (99.07% were observed where metribuzin plus isoproturon was used. This was followed by Atlantis with 3.26 weeds per m2 with 95.14% mortality of weeds. However, significantly higher 1000 grain weight was noted with Atlantis (29.50 g and metribuzin plus isoproturon (28.58 g. The treatments did not differ significantly with respect to 1000 grain weight. All the herbicide helped to increase the yield from 16 to 22%, but did not differ significantly with respect to yield gain. The highest yield (3759.40 kg ha-1 was produced by Atlantis followed by sulfosulfuron (3757.20 kg ha-1 . On the basis of cost benefit ratio sulfosulfuron (34.95 proved to be the best followed by metribuzin (16.78. Therefore, sulfosulfuron and metribuzin are recommended for the control of Bromus weed in wheat crop.

  15. A Pilot Study on Integrating Videography and Environmental Microbial Sampling to Model Fecal Bacterial Exposures in Peri-Urban Tanzania.

    Directory of Open Access Journals (Sweden)

    Timothy R Julian

    Full Text Available Diarrheal diseases are a leading cause of under-five mortality and morbidity in sub-Saharan Africa. Quantitative exposure modeling provides opportunities to investigate the relative importance of fecal-oral transmission routes (e.g. hands, water, food responsible for diarrheal disease. Modeling, however, requires accurate descriptions of individuals' interactions with the environment (i.e., activity data. Such activity data are largely lacking for people in low-income settings. In the present study, we collected activity data and microbiological sampling data to develop a quantitative microbial exposure model for two female caretakers in peri-urban Tanzania. Activity data were combined with microbiological data of contacted surfaces and fomites (e.g. broom handle, soil, clothing to develop example exposure profiles describing second-by-second estimates of fecal indicator bacteria (E. coli and enterococci concentrations on the caretaker's hands. The study demonstrates the application and utility of video activity data to quantify exposure factors for people in low-income countries and apply these factors to understand fecal contamination exposure pathways. This study provides both a methodological approach for the design and implementation of larger studies, and preliminary data suggesting contacts with dirt and sand may be important mechanisms of hand contamination. Increasing the scale of activity data collection and modeling to investigate individual-level exposure profiles within target populations for specific exposure scenarios would provide opportunities to identify the relative importance of fecal-oral disease transmission routes.

  16. Plant-Pathogen Interaction-Related MicroRNAs and Their Targets Provide Indicators of Phytoplasma Infection in Paulownia tomentosa × Paulownia fortunei.

    Directory of Open Access Journals (Sweden)

    Guoqiang Fan

    Full Text Available Paulownia witches' broom (PaWB caused by a phytoplasma, has caused extensive losses in the yields of paulownia timber and resulted in significant economic losses. However, the molecular mechanisms in Paulownia that underlie the phytoplasma stress are poorly characterized. In this study, we use an Illumina platform to sequence four small RNA libraries and four degradome sequencing libraries derived from healthy, PaWB-infected, and PaWB-infected 15 mg·L-1 and 30 mg·L-1 methyl methane sulfonate (MMS-treated plants. In total, 125 conserved and 118 novel microRNAs (miRNAs were identified and 33 miRNAs responsive to PaWB disease were discovered. Furthermore, 166 target genes for 18 PaWB disease-related miRNAs were obtained, and found to be involved in plant-pathogen interaction and plant hormone signal transduction metabolic pathways. Eleven miRNAs and target genes responsive to PaWB disease were examined by a quantitative real-time PCR approach. Our findings will contribute to studies on miRNAs and their targets in Paulownia, and provide new insights to further understand plant-phytoplasma interactions.

  17. A new design approach to innovative spectrometers. Case study: TROPOLITE

    Science.gov (United States)

    Volatier, Jean-Baptiste; Baümer, Stefan; Kruizinga, Bob; Vink, Rob

    2014-05-01

    Designing a novel optical system is a nested iterative process. The optimization loop, from a starting point to final system is already mostly automated. However this loop is part of a wider loop which is not. This wider loop starts with an optical specification and ends with a manufacturability assessment. When designing a new spectrometer with emphasis on weight and cost, numerous iterations between the optical- and mechanical designer are inevitable. The optical designer must then be able to reliably produce optical designs based on new input gained from multidisciplinary studies. This paper presents a procedure that can automatically generate new starting points based on any kind of input or new constraint that might arise. These starting points can then be handed over to a generic optimization routine to make the design tasks extremely efficient. The optical designer job is then not to design optical systems, but to meta-design a procedure that produces optical systems paving the way for system level optimization. We present here this procedure and its application to the design of TROPOLITE a lightweight push broom imaging spectrometer.

  18. Control of invasive weeds with prescribed burning

    Science.gov (United States)

    DiTomaso, Joseph M.; Brooks, Matthew L.; Allen, Edith B.; Minnich, Ralph; Rice, Peter M.; Kyser, Guy B.

    2006-01-01

    Prescribed burning has primarily been used as a tool for the control of invasive late-season annual broadleaf and grass species, particularly yellow starthistle, medusahead, barb goatgrass, and several bromes. However, timely burning of a few invasive biennial broadleaves (e.g., sweetclover and garlic mustard), perennial grasses (e.g., bluegrasses and smooth brome), and woody species (e.g., brooms and Chinese tallow tree) also has been successful. In many cases, the effectiveness of prescribed burning can be enhanced when incorporated into an integrated vegetation management program. Although there are some excellent examples of successful use of prescribed burning for the control of invasive species, a limited number of species have been evaluated. In addition, few studies have measured the impact of prescribed burning on the long-term changes in plant communities, impacts to endangered plant species, effects on wildlife and insect populations, and alterations in soil biology, including nutrition, mycorrhizae, and hydrology. In this review, we evaluate the current state of knowledge on prescribed burning as a tool for invasive weed management.

  19. Common handling procedures conducted in preclinical safety studies result in minimal hepatic gene expression changes in Sprague-Dawley rats.

    Directory of Open Access Journals (Sweden)

    Yudong D He

    Full Text Available Gene expression profiling is a tool to gain mechanistic understanding of adverse effects in response to compound exposure. However, little is known about how the common handling procedures of experimental animals during a preclinical study alter baseline gene expression. We report gene expression changes in the livers of female Sprague-Dawley rats following common handling procedures. Baseline gene expression changes identified in this study provide insight on how these changes may affect interpretation of gene expression profiles following compound exposure. Rats were divided into three groups. One group was not subjected to handling procedures and served as controls for both handled groups. Animals in the other two groups were weighed, subjected to restraint in Broome restrainers, and administered water via oral gavage daily for 1 or 4 days with tail vein blood collections at 1, 2, 4, and 8 hours postdose on days 1 and 4. Significantly altered genes were identified in livers of animals following 1 or 4 days of handling when compared to the unhandled animals. Gene changes in animals handled for 4 days were similar to those handled for 1 day, suggesting a lack of habituation. The altered genes were primarily immune function related genes. These findings, along with a correlating increase in corticosterone levels suggest that common handling procedures may cause a minor immune system perturbance.

  20. Production of a full-length infectious GFP-tagged cDNA clone of Beet mild yellowing virus for the study of plant-polerovirus interactions.

    Science.gov (United States)

    Stevens, Mark; Viganó, Felicita

    2007-04-01

    The full-length cDNA of Beet mild yellowing virus (Broom's Barn isolate) was sequenced and cloned into the vector pLitmus 29 (pBMYV-BBfl). The sequence of BMYV-BBfl (5721 bases) shared 96% and 98% nucleotide identity with the other complete sequences of BMYV (BMYV-2ITB, France and BMYV-IPP, Germany respectively). Full-length capped RNA transcripts of pBMYV-BBfl were synthesised and found to be biologically active in Arabidopsis thaliana protoplasts following electroporation or PEG inoculation when the protoplasts were subsequently analysed using serological and molecular methods. The BMYV sequence was modified by inserting DNA that encoded the jellyfish green fluorescent protein (GFP) into the P5 gene close to its 3' end. A. thaliana protoplasts electroporated with these RNA transcripts were biologically active and up to 2% of transfected protoplasts showed GFP-specific fluorescence. The exploitation of these cDNA clones for the study of the biology of beet poleroviruses is discussed.

  1. A Pilot Study on Integrating Videography and Environmental Microbial Sampling to Model Fecal Bacterial Exposures in Peri-Urban Tanzania.

    Science.gov (United States)

    Julian, Timothy R; Pickering, Amy J

    2015-01-01

    Diarrheal diseases are a leading cause of under-five mortality and morbidity in sub-Saharan Africa. Quantitative exposure modeling provides opportunities to investigate the relative importance of fecal-oral transmission routes (e.g. hands, water, food) responsible for diarrheal disease. Modeling, however, requires accurate descriptions of individuals' interactions with the environment (i.e., activity data). Such activity data are largely lacking for people in low-income settings. In the present study, we collected activity data and microbiological sampling data to develop a quantitative microbial exposure model for two female caretakers in peri-urban Tanzania. Activity data were combined with microbiological data of contacted surfaces and fomites (e.g. broom handle, soil, clothing) to develop example exposure profiles describing second-by-second estimates of fecal indicator bacteria (E. coli and enterococci) concentrations on the caretaker's hands. The study demonstrates the application and utility of video activity data to quantify exposure factors for people in low-income countries and apply these factors to understand fecal contamination exposure pathways. This study provides both a methodological approach for the design and implementation of larger studies, and preliminary data suggesting contacts with dirt and sand may be important mechanisms of hand contamination. Increasing the scale of activity data collection and modeling to investigate individual-level exposure profiles within target populations for specific exposure scenarios would provide opportunities to identify the relative importance of fecal-oral disease transmission routes.

  2. Molecular identification of phytoplasmas associated with some weeds in West Azarbaijan province, Iran

    Directory of Open Access Journals (Sweden)

    Samaneh ZIBADOOST

    2016-04-01

    Full Text Available During field surveys in 2013 and 2014, about 14 weed plants showing phytoplasma diseases symptoms including yellowing and witches’broom were collected and tested by polymerase chain reaction (PCR using universal primers for 16SrRNA starting by primer pairs P1/P7 in first round PCR followed by primer pair R16F2n/R16R2 in nested PCR. The detected phytoplasmas were characterized and differentiated through sequence analysis of PCR-amplified rDNA and virtual restriction fragment length polymorphism (RFLP. The phytoplasmas detected in symptomatic horseweed (Erigeron canadensis L., common madder (Rubia tinctorum L., Johnson grass (Sorghum halepense [L.] Pers. and Sophora root (Sophora alopecuroides L. were identified as members of the clover proliferation group (16SrVI group by construction of phylogenetic trees. Further analysis by virtual RFLP classified the phytoplasmas of Erigeron canadensis L. and Sorghum halepense L. in subgroup 16SrVI-A and phytoplasmas of Rubia tinctorum L. and Sophora alpecuriodes L. in subgroup 16SrVI-D. This is the first report on the occurrence of phytoplasma diseases of weeds in west Azarbaijan, Iran.

  3. Mixobiota do Parque Nacional Serra de Itabaiana, SE, Brasil: Physarales Myxobiota of Serra de Itabaiana National Park, Sergipe State, Brazil: Physarales

    Directory of Open Access Journals (Sweden)

    Maria de Fátima de Andrade Bezerra

    2008-12-01

    Full Text Available Visando contribuir com informações sobre a diversidade de Myxomycetes em florestas úmidas e savanas Neotropicais, foram inventariadas as espécies de Physarales associadas a diferentes microhabitats no Parque Nacional Serra de Itabaiana, Sergipe, Brasil (10º40'52"S e 37º25'15"W, 180-670 m, 7966 ha. Durante 20 meses consecutivos foram efetuadas coletas de esporocarpos e de amostras de vários tipos de substratos a serem utilizados na preparação de 590 câmaras-úmidas. Coleções representativas do material estudado foram depositadas no Herbário UFP, com duplicatas no herbário MA - Fungi. A abundância e a constância de cada espécie foram determinadas. Apresenta-se uma lista comentada das sete espécies de Didymiaceae e 24 espécies de Physaraceae identificadas e sua distribuição no Brasil. As Physarales estão presentes em todos os microhabitats analisados, esporulando na estiagem e na estação chuvosa; fimícolas e suculentícolas foram registradas apenas em câmara-úmida. As espécies mais abundantes foram Physarum viride (Bull. Pers., P. stellatum (Massee G.W. Martin e P. cinereum (Batsch Pers. Exceto Diachea silvaepluvialis M.L. Farr, P. cinereume Physarum roseumBerk. & Broome, todos os táxons constituem primeira referência para Sergipe. Diderma rugosum (Rex T. Macbr., Didymium dubium Rostaf. e Physarum pulcherrimum Berk. & Ravenel estão sendo referidas pela primeira vez para o Brasil.The aims of this study were to obtain data on Myxomycete diversity in Neotropical forests and savannas and to determine the composition of the Physarales species assemblage associated with different microhabitats in Serra de Itabaiana National Park, Sergipe (10º 40'52"S; 37º 25'15"W, 180-670m alt., 7966 ha. During 20 months, sporocarps were collected and samples of substrata obtained for use in 590 moist-chamber cultures. Collections are deposited in the Herbaria UFP and MA - Fungi. The abundance and constancy of each species are given

  4. Mapping of auroral x-rays from rocket overflights

    International Nuclear Information System (INIS)

    Goldberg, R.A.; Barcus, J.R.; Treinish, L.A.; Vondrak, R.R.

    1982-01-01

    In March 1978, two Nike Tomahawk payloads were launched from Poker Flat, Alaska, to observe the structure of bremsstrhlung x rays and precipitating particles during both nighttime and daytime observe x rays in four spectral ranges (5--10 keV, 10--20 keV, 20--40 keV, and >40 keV). Particle contamination of the detectors was avoided with broom magnet shielding techniques. By virtue of the payloads' approximate 20 0 coning angle (about 10.5-s period), the detectors scanned wide regions on either side of the trajectory paths. This has permitted construction (using computer color graphics) of the time averaged (approx.4 min) x ray source regions near 100 km, a height consistent with Chatanika radar electron density maps obtained during each flight period. X ray image maps for both flights exhibit enhanced source regions well outside the rocket trajectory planes. For the nighttime overflight, Chatanika radar scan data and Fort Yukon riometer data were used to verify the presence of an x ray imaged enhancement of electron precipitation, approximately 30 km to the east of the rocket trajectory plane. The daytime x ray data also exhibited several regions of enhanced emission, but outside the region scanned by Chatanika radar. A comparison of the x ray emissions from the two events shows the daytime x ray spectral distributions to be significantly harder but less intense that the nighttime distributions. Furthermore, for both events, spectra compared within and nearby each enhanced emitting region exhibit characteristics of a two component spectrum, such that the bright regions show an increased flux primarily in the low-energy component. Electron fluxes measured on each of the two flights with Geiger tubes are mainly isotropic over the downward hemisphere at night but show anisotropic pitch angle characteristics by day, consistent with the concept that the enhancement of the low-energy x ray flux component is predominantly induced by electrons filling the loss cone

  5. Recombinant β-1,3-1,4-glucanase from Theobroma cacao impairs Moniliophthora perniciosa mycelial growth.

    Science.gov (United States)

    Britto, Dahyana Santos; Pirovani, Carlos Priminho; Andrade, Bruno Silva; Dos Santos, Tassiara Pereira; Pungartnik, Cristina; Cascardo, Júlio Cezar M; Micheli, Fabienne; Gesteira, Abelmon S

    2013-09-01

    In this work, we identified a gene from Theobroma cacao L. genome and cDNA libraries, named TcGlu2, that encodes a β-1,3-1,4-glucanase. The TcGlu2 ORF was 720 bp in length and encoded a polypeptide of 239 amino acids with a molecular mass of 25.58 kDa. TcGlu2 contains a conserved domain characteristic of β-1,3-1,4-glucanases and presented high protein identity with β-1,3-1,4-glucanases from other plant species. Molecular modeling of TcGlu2 showed an active site of 13 amino acids typical of glucanase with β-1,3 and 1,4 action mode. The recombinant cDNA TcGlu2 obtained by heterologous expression in Escherichia coli and whose sequence was confirmed by mass spectrometry, has a molecular mass of about 22 kDa (with His-Tag) and showed antifungal activity against the fungus Moniliophthora perniciosa, causal agent of the witches' broom disease in cacao. The integrity of the hyphae membranes of M. perniciosa, incubated with protein TcGlu2, was analyzed with propidium iodide. After 1 h of incubation, a strong fluorescence emitted by the hyphae indicating the hydrolysis of the membrane by TcGlu2, was observed. To our knowledge, this is the first study of a cacao β-1,3-1,4-glucanase expression in heterologous system and the first analysis showing the antifungal activity of a β-1,3-1,4-glucanase, in particular against M. perniciosa.

  6. First Microsatellite Markers Developed from Cupuassu ESTs: Application in Diversity Analysis and Cross-Species Transferability to Cacao.

    Science.gov (United States)

    Ferraz Dos Santos, Lucas; Moreira Fregapani, Roberta; Falcão, Loeni Ludke; Togawa, Roberto Coiti; Costa, Marcos Mota do Carmo; Lopes, Uilson Vanderlei; Peres Gramacho, Karina; Alves, Rafael Moyses; Micheli, Fabienne; Marcellino, Lucilia Helena

    2016-01-01

    The cupuassu tree (Theobroma grandiflorum) (Willd. ex Spreng.) Schum. is a fruitful species from the Amazon with great economical potential, due to the multiple uses of its fruit´s pulp and seeds in the food and cosmetic industries, including the production of cupulate, an alternative to chocolate. In order to support the cupuassu breeding program and to select plants presenting both pulp/seed quality and fungal disease resistance, SSRs from Next Generation Sequencing ESTs were obtained and used in diversity analysis. From 8,330 ESTs, 1,517 contained one or more SSRs (1,899 SSRs identified). The most abundant motifs identified in the EST-SSRs were hepta- and trinucleotides, and they were found with a minimum and maximum of 2 and 19 repeats, respectively. From the 1,517 ESTs containing SSRs, 70 ESTs were selected based on their functional annotation, focusing on pulp and seed quality, as well as resistance to pathogens. The 70 ESTs selected contained 77 SSRs, and among which, 11 were polymorphic in cupuassu genotypes. These EST-SSRs were able to discriminate the cupuassu genotype in relation to resistance/susceptibility to witches' broom disease, as well as to pulp quality (SST/ATT values). Finally, we showed that these markers were transferable to cacao genotypes, and that genome availability might be used as a predictive tool for polymorphism detection and primer design useful for both Theobroma species. To our knowledge, this is the first report involving EST-SSRs from cupuassu and is also a pioneer in the analysis of marker transferability from cupuassu to cacao. Moreover, these markers might contribute to develop or saturate the cupuassu and cacao genetic maps, respectively.

  7. Instrument pre-development activities for FLEX

    Science.gov (United States)

    Pettinato, L.; Fossati, E.; Coppo, P. M.; Taiti, A.; Labate, D.; Capanni, A.; Taccola, M.; Bézy, J. L.; Francois, M.; Meynart, R.; Erdmann, L.; Triebel, P.

    2017-09-01

    The FLuorescence Imaging Spectrometer (FLORIS) is the payload of the FLuorescence Explorer Mission (FLEX) of the European Space Agency. The mission objective is to perform quantitative measurements of the solar induced vegetation fluorescence to monitor photosynthetic activity. FLORIS works in a push-broom configuration and it is designed to acquire data in the 500-780 nm spectral range, with a sampling of 0.1 nm in the oxygen bands (759-769 nm and 686- 697 nm) and 0.5-2.0 nm in the red edge, chlorophyll absorption and Photochemical Reflectance Index bands. FLEX will fly in formation with Sentinel-3 to benefit of the measurements made by the Sentinel-3 instruments OLCI and SLSTR, particularly for cloud screening, proper characterization of the atmospheric state and determination of the surface temperature. The instrument concept is based on a common telescope and two modified Offner spectrometers with reflective concave gratings both for the High Resolution (HR) and Low Resolution (LR) spectrometers. In the frame of the instrument pre-development Leonardo Company (I) has built and tested an elegant breadboard of the instrument consisting of the telescope and the HR spectrometer. The development of the LR spectrometer is in charge of OHB System AG (D) and is currently in the manufacturing phase. The main objectives of the activity are: anticipate the development of the instrument and provide early risk retirement of critical components, evaluate the system performances such as imaging quality parameters, straylight, ghost, polarization sensitivity and environmental influences, verify the adequacy of critical tests such as spectral characterization and straylight, define and optimize instrument alignment procedures. Following a brief overview of the FLEX mission, the paper will cover the design and the development of the optics breadboard with emphasis on the results obtained during the tests and the lessons learned for the flight unit.

  8. First Microsatellite Markers Developed from Cupuassu ESTs: Application in Diversity Analysis and Cross-Species Transferability to Cacao.

    Directory of Open Access Journals (Sweden)

    Lucas Ferraz Dos Santos

    Full Text Available The cupuassu tree (Theobroma grandiflorum (Willd. ex Spreng. Schum. is a fruitful species from the Amazon with great economical potential, due to the multiple uses of its fruit´s pulp and seeds in the food and cosmetic industries, including the production of cupulate, an alternative to chocolate. In order to support the cupuassu breeding program and to select plants presenting both pulp/seed quality and fungal disease resistance, SSRs from Next Generation Sequencing ESTs were obtained and used in diversity analysis. From 8,330 ESTs, 1,517 contained one or more SSRs (1,899 SSRs identified. The most abundant motifs identified in the EST-SSRs were hepta- and trinucleotides, and they were found with a minimum and maximum of 2 and 19 repeats, respectively. From the 1,517 ESTs containing SSRs, 70 ESTs were selected based on their functional annotation, focusing on pulp and seed quality, as well as resistance to pathogens. The 70 ESTs selected contained 77 SSRs, and among which, 11 were polymorphic in cupuassu genotypes. These EST-SSRs were able to discriminate the cupuassu genotype in relation to resistance/susceptibility to witches' broom disease, as well as to pulp quality (SST/ATT values. Finally, we showed that these markers were transferable to cacao genotypes, and that genome availability might be used as a predictive tool for polymorphism detection and primer design useful for both Theobroma species. To our knowledge, this is the first report involving EST-SSRs from cupuassu and is also a pioneer in the analysis of marker transferability from cupuassu to cacao. Moreover, these markers might contribute to develop or saturate the cupuassu and cacao genetic maps, respectively.

  9. Living with genome instability: the adaptation of phytoplasmas todiverse environments of their insect and plant hosts

    Energy Technology Data Exchange (ETDEWEB)

    Bai, Xiaodong; Zhang, Jianhua; Ewing, Adam; Miller, Sally A.; Radek, Agnes; Shevchenko, Dimitriy; Tsukerman, Kiryl; Walunas, Theresa; Lapidus, Alla; Campbell, John W.; Hogenhout Saskia A.

    2006-02-17

    Phytoplasmas (Candidatus Phytoplasma, Class Mollicutes) cause disease in hundreds of economically important plants, and are obligately transmitted by sap-feeding insects of the order Hemiptera, mainly leafhoppers and psyllids. The 706,569-bp chromosome and four plasmids of aster yellows phytoplasma strain witches broom (AY-WB) were sequenced and compared to the onion yellows phytoplasma strain M (OY-M) genome. The phytoplasmas have small repeat-rich genomes. The repeated DNAs are organized into large clusters, potential mobile units (PMUs), which contain tra5 insertion sequences (ISs), and specialized sigma factors and membrane proteins. So far, PMUs are unique to phytoplasmas. Compared to mycoplasmas, phytoplasmas lack several recombination and DNA modification functions, and therefore phytoplasmas probably use different mechanisms of recombination, likely involving PMUs, for the creation of variability, allowing phytoplasmas to adjust to the diverse environments of plants and insects. The irregular GC skews and presence of ISs and large repeated sequences in the AY-WB and OY-M genomes are indicative of high genomic plasticity. Nevertheless, segments of {approx}250 kb, located between genes lplA and glnQ are syntenic between the two phytoplasmas, contain the majority of the metabolic genes and no ISs. AY-WB is further along in the reductive evolution process than OY-M. The AY-WB genome is {approx}154 kb smaller than the OY-M genome, primarily as a result of fewer multicopy sequences, including PMUs. Further, AY-WB lacks genes that are truncated and are part of incomplete pathways in OY-M. This is the first comparative phytoplasma genome analysis and report of the existence of PMUs in phytoplasma genomes.

  10. Technical Report: Unmanned Helicopter Solution for Survey-Grade Lidar and Hyperspectral Mapping

    Science.gov (United States)

    Kaňuk, Ján; Gallay, Michal; Eck, Christoph; Zgraggen, Carlo; Dvorný, Eduard

    2018-05-01

    Recent development of light-weight unmanned airborne vehicles (UAV) and miniaturization of sensors provide new possibilities for remote sensing and high-resolution mapping. Mini-UAV platforms are emerging, but powerful UAV platforms of higher payload capacity are required to carry the sensors for survey-grade mapping. In this paper, we demonstrate a technological solution and application of two different payloads for highly accurate and detailed mapping. The unmanned airborne system (UAS) comprises a Scout B1-100 autonomously operating UAV helicopter powered by a gasoline two-stroke engine with maximum take-off weight of 75 kg. The UAV allows for integrating of up to 18 kg of a customized payload. Our technological solution comprises two types of payload completely independent of the platform. The first payload contains a VUX-1 laser scanner (Riegl, Austria) and a Sony A6000 E-Mount photo camera. The second payload integrates a hyperspectral push-broom scanner AISA Kestrel 10 (Specim, Finland). The two payloads need to be alternated if mapping with both is required. Both payloads include an inertial navigation system xNAV550 (Oxford Technical Solutions Ltd., United Kingdom), a separate data link, and a power supply unit. Such a constellation allowed for achieving high accuracy of the flight line post-processing in two test missions. The standard deviation was 0.02 m (XY) and 0.025 m (Z), respectively. The intended application of the UAS was for high-resolution mapping and monitoring of landscape dynamics (landslides, erosion, flooding, or crops growth). The legal regulations for such UAV applications in Switzerland and Slovakia are also discussed.

  11. Multipurpose Hyperspectral Imaging System

    Science.gov (United States)

    Mao, Chengye; Smith, David; Lanoue, Mark A.; Poole, Gavin H.; Heitschmidt, Jerry; Martinez, Luis; Windham, William A.; Lawrence, Kurt C.; Park, Bosoon

    2005-01-01

    A hyperspectral imaging system of high spectral and spatial resolution that incorporates several innovative features has been developed to incorporate a focal plane scanner (U.S. Patent 6,166,373). This feature enables the system to be used for both airborne/spaceborne and laboratory hyperspectral imaging with or without relative movement of the imaging system, and it can be used to scan a target of any size as long as the target can be imaged at the focal plane; for example, automated inspection of food items and identification of single-celled organisms. The spectral resolution of this system is greater than that of prior terrestrial multispectral imaging systems. Moreover, unlike prior high-spectral resolution airborne and spaceborne hyperspectral imaging systems, this system does not rely on relative movement of the target and the imaging system to sweep an imaging line across a scene. This compact system (see figure) consists of a front objective mounted at a translation stage with a motorized actuator, and a line-slit imaging spectrograph mounted within a rotary assembly with a rear adaptor to a charged-coupled-device (CCD) camera. Push-broom scanning is carried out by the motorized actuator which can be controlled either manually by an operator or automatically by a computer to drive the line-slit across an image at a focal plane of the front objective. To reduce the cost, the system has been designed to integrate as many as possible off-the-shelf components including the CCD camera and spectrograph. The system has achieved high spectral and spatial resolutions by using a high-quality CCD camera, spectrograph, and front objective lens. Fixtures for attachment of the system to a microscope (U.S. Patent 6,495,818 B1) make it possible to acquire multispectral images of single cells and other microscopic objects.

  12. Rigorous Photogrammetric Processing of CHANG'E-1 and CHANG'E-2 Stereo Imagery for Lunar Topographic Mapping

    Science.gov (United States)

    Di, K.; Liu, Y.; Liu, B.; Peng, M.

    2012-07-01

    Chang'E-1(CE-1) and Chang'E-2(CE-2) are the two lunar orbiters of China's lunar exploration program. Topographic mapping using CE-1 and CE-2 images is of great importance for scientific research as well as for preparation of landing and surface operation of Chang'E-3 lunar rover. In this research, we developed rigorous sensor models of CE-1 and CE-2 CCD cameras based on push-broom imaging principle with interior and exterior orientation parameters. Based on the rigorous sensor model, the 3D coordinate of a ground point in lunar body-fixed (LBF) coordinate system can be calculated by space intersection from the image coordinates of con-jugate points in stereo images, and the image coordinates can be calculated from 3D coordinates by back-projection. Due to uncer-tainties of the orbit and the camera, the back-projected image points are different from the measured points. In order to reduce these inconsistencies and improve precision, we proposed two methods to refine the rigorous sensor model: 1) refining EOPs by correcting the attitude angle bias, 2) refining the interior orientation model by calibration of the relative position of the two linear CCD arrays. Experimental results show that the mean back-projection residuals of CE-1 images are reduced to better than 1/100 pixel by method 1 and the mean back-projection residuals of CE-2 images are reduced from over 20 pixels to 0.02 pixel by method 2. Consequently, high precision DEM (Digital Elevation Model) and DOM (Digital Ortho Map) are automatically generated.

  13. Mutual information registration of multi-spectral and multi-resolution images of DigitalGlobe's WorldView-3 imaging satellite

    Science.gov (United States)

    Miecznik, Grzegorz; Shafer, Jeff; Baugh, William M.; Bader, Brett; Karspeck, Milan; Pacifici, Fabio

    2017-05-01

    WorldView-3 (WV-3) is a DigitalGlobe commercial, high resolution, push-broom imaging satellite with three instruments: visible and near-infrared VNIR consisting of panchromatic (0.3m nadir GSD) plus multi-spectral (1.2m), short-wave infrared SWIR (3.7m), and multi-spectral CAVIS (30m). Nine VNIR bands, which are on one instrument, are nearly perfectly registered to each other, whereas eight SWIR bands, belonging to the second instrument, are misaligned with respect to VNIR and to each other. Geometric calibration and ortho-rectification results in a VNIR/SWIR alignment which is accurate to approximately 0.75 SWIR pixel at 3.7m GSD, whereas inter-SWIR, band to band registration is 0.3 SWIR pixel. Numerous high resolution, spectral applications, such as object classification and material identification, require more accurate registration, which can be achieved by utilizing image processing algorithms, for example Mutual Information (MI). Although MI-based co-registration algorithms are highly accurate, implementation details for automated processing can be challenging. One particular challenge is how to compute bin widths of intensity histograms, which are fundamental building blocks of MI. We solve this problem by making the bin widths proportional to instrument shot noise. Next, we show how to take advantage of multiple VNIR bands, and improve registration sensitivity to image alignment. To meet this goal, we employ Canonical Correlation Analysis, which maximizes VNIR/SWIR correlation through an optimal linear combination of VNIR bands. Finally we explore how to register images corresponding to different spatial resolutions. We show that MI computed at a low-resolution grid is more sensitive to alignment parameters than MI computed at a high-resolution grid. The proposed modifications allow us to improve VNIR/SWIR registration to better than ¼ of a SWIR pixel, as long as terrain elevation is properly accounted for, and clouds and water are masked out.

  14. Moniliophthora roreri, causal agent of cacao frosty pod rot.

    Science.gov (United States)

    Bailey, Bryan A; Evans, Harry C; Phillips-Mora, Wilbert; Ali, Shahin S; Meinhardt, Lyndel W

    2017-12-01

    Taxonomy: Moniliophthora roreri (Cif.) H.C. Evans et al. ; Phylum Basidiomycota; Class Agaricomycetes; Order Agaricales; Family Marasmiaceae; Genus Moniliophthora. Biology: Moniliophthora roreri attacks Theobroma and Herrania species causing frosty pod rot. Theobroma cacao (cacao) is the host of major economic concern. Moniliophthora roreri is a hemibiotroph with a long biotrophic phase (45-90 days). Spore masses, of apparent asexual origin, are produced on the pod surface after initiation of the necrotrophic phase. Spores are spread by wind, rain and human activity. Symptoms of the biotrophic phase can include necrotic flecks and, in some cases, pod malformation, but pods otherwise remain asymptomatic. Relationship to Moniliophthora perniciosa: Moniliophthora roreri and Moniliophthora perniciosa, causal agent of witches' broom disease of cacao, are closely related. Their genomes are similar, including many of the genes they carry which are considered to be important in the disease process. Moniliophthora perniciosa, also a hemibiotroph, has a typical basidiomycete lifestyle and morphology, forming clamp connections and producing mushrooms. Basidiospores infect meristematic tissues including flower cushions, stem tips and pods. Moniliophthora roreri does not form clamp connections or mushrooms and infects pods only. Both pathogens are limited to the Western Hemisphere and are a threat to cacao production around the world. Agronomic importance: Disease losses caused by frosty pod rot can reach 90% and result in field abandonment. Moniliophthora roreri remains in the invasive phase in the Western Hemisphere, not having reached Brazil, some islands within the Caribbean and a few specific regions within otherwise invaded countries. The disease can be managed by a combination of cultural (for example, maintenance of tree height and removal of infected pods) and chemical methods. These methods benefit from regional application, but can be cost prohibitive. Breeding for

  15. Effects of Retama raetam (Forssk. Webb & Berthel. (Fabaceae on the central nervous system in experimental animals

    Directory of Open Access Journals (Sweden)

    Al-Tubuly Rida A.

    2011-01-01

    Full Text Available Retama raetam (Forssk. Webb & Berthel. (Fabaceae, commonly known as ‘raetam’ or ‘broom bush’, is a desert shrub that grows abundantly in North-African countries, Palestine and Syria. Traditionally, this plant has been used as an abortifacient, a purgative and a vermifuge. In the present study, the effect of the methanol (MeOH extract of the aerial parts of R. raetam on the central nervous system (CNS has been evaluated using a mice model. In the photoelectrical cell test, the extract of R. raetam (ERR at a dose of 125 mg/kg body weight did not exhibit any effect on the spontaneous motor activity in mice. At a dose of 250 mg/kg body weight, ERR increased ambulatory movement, but had no effect on the non-ambulatory movement, while a dose of 375 mg/kg body weight decreased both ambulatory and non-ambulatory movements. The effect of ERR on the anxiety levels and behaviors of mice was investigated using the elevated plus-maze test. At doses of 125, 250 and 375 mg/kg body weight, ERR decreased anxiety levels without showing an effect on the total activity; it did not affect anxiety levels but increased the total activity; it increased anxiety levels and decreased the total activity, respectively. In the diazepam-induced sleep test, ERR increased the onset of sleep without affecting the duration of sleep at the dose of 250 mg/kg body weight. The dose of 375 mg/kg body weight decreased the onset of sleep while increasing the duration of sleep. ERR did not exhibit any effect on the diazepam-induced sleep in the presence of flumazenil or picrotoxin.

  16. METHODOLOGY FOR DETERMINING OPTIMAL EXPOSURE PARAMETERS OF A HYPERSPECTRAL SCANNING SENSOR

    Directory of Open Access Journals (Sweden)

    P. Walczykowski

    2016-06-01

    Full Text Available The purpose of the presented research was to establish a methodology that would allow the registration of hyperspectral images with a defined spatial resolution on a horizontal plane. The results obtained within this research could then be used to establish the optimum sensor and flight parameters for collecting aerial imagery data using an UAV or other aerial system. The methodology is based on an user-selected optimal camera exposure parameters (i.e. time, gain value and flight parameters (i.e. altitude, velocity. A push-broom hyperspectral imager- the Headwall MicroHyperspec A-series VNIR was used to conduct this research. The measurement station consisted of the following equipment: a hyperspectral camera MicroHyperspec A-series VNIR, a personal computer with HyperSpec III software, a slider system which guaranteed the stable motion of the sensor system, a white reference panel and a Siemens star, which was used to evaluate the spatial resolution. Hyperspectral images were recorded at different distances between the sensor and the target- from 5m to 100m. During the registration process of each acquired image, many exposure parameters were changed, such as: the aperture value, exposure time and speed of the camera’s movement on the slider. Based on all of the registered hyperspectral images, some dependencies between chosen parameters had been developed: - the Ground Sampling Distance – GSD and the distance between the sensor and the target, - the speed of the camera and the distance between the sensor and the target, - the exposure time and the gain value, - the Density Number and the gain value. The developed methodology allowed us to determine the speed and the altitude of an unmanned aerial vehicle on which the sensor would be mounted, ensuring that the registered hyperspectral images have the required spatial resolution.

  17. 'There's the record, closed and final': Rough for Theatre II as Psychiatric Encounter.

    Science.gov (United States)

    Heron, Jonathan; Broome, Matthew

    2016-06-01

    A co-authored collaboration between a theatre practitioner and a clinical psychiatrist, this paper will examine Rough for Theatre II (RFTII) and Beckett's demonstration of the way records are used to understand the human subject. Using Beckett's play to explore interdisciplinary issues of embodiment and diagnosis, the authors will present a dialogue that makes use of the 'best sources' in precisely the same manner as the play's protagonists. One of those sources will be Beckett himself, as Heron will locate the play in its theatrical context through reflections upon his own practice (with Fail Better Productions, UK) as well as recent studies such as Beckett, Technology and the Body (Maude 2009) and Performing Embodiment in Samuel Beckett's Drama (McMullan 2010); another source will be the philosopher Wilhelm Windleband, whose 1901 History of Philosophy was read and noted upon by Beckett in the 1930s, as Broome will introduce a philosophical and psychiatric context to the exchange. Windelband is now a neglected figure in philosophy; but as one of the key figures of Neo-Kantianism in the late 19(th) century, his work was an important impetus to that of Rickert, Weber and Heidegger. Specifically, Windelband gives us the distinction between idiographic and nomothetic understanding of individuals, an approach that is of relevance to the psychiatric encounter. This academic dialogue will consider tensions between subjectivity and objectivity in clinical and performance practice, while examining Beckett's analysis of the use of case notes and relating them back to Windelband's ideas on the understanding of others. The dialogue took place in 2011 at the University of Warwick, and has since been edited by the authors.

  18. RESOURCESAT-2: a mission for Earth resources management

    Science.gov (United States)

    Venkata Rao, M.; Gupta, J. P.; Rattan, Ram; Thyagarajan, K.

    2006-12-01

    The Indian Space Research Organisation (ISRO) has established an operational Remote sensing satellite system by launching its first satellite, IRS-1A in 1988, followed by a series of IRS spacecraft. The IRS-1C/1D satellites with their unique combination of Payloads have taken a lead position in the Global remote sensing scenario. Realising the growing User demands for the "Multi" level approach in terms of Spatial, Spectral, Temporal and Radiometric resolutions, ISRO identified the Resourcesat as a continuity as well as improved RS Satellite. The Resourcesat-1 (IRS-P6) was launched in October 2003 using PSLV launch vehicle and it is in operational service. Resourcesat-2 is its follow-on Mission scheduled for launch in 2008. Each Resourcesat satellite carries three Electro-optical cameras as its payload - LISS-3, LISS-4 and AWIFS. All the three are multi-spectral push-broom scanners with linear array CCDs as Detectors. LISS-3 and AWIFS operate in four identical spectral bands in the VIS-NIR-SWIR range while LISS-4 is a high resolution camera with three spectral bands in VIS-NIR range. In order to meet the stringent requirements of band-to-band registration and platform stability, several improvements have been incorporated in the mainframe Bus configuration like wide field Star trackers, precision Gyroscopes, on-board GPS receiver etc,. The Resourcesat data finds its application in several areas like agricultural crop discrimination and monitoring, crop acreage/yield estimation, precision farming, water resources, forest mapping, Rural infrastructure development, disaster management etc,. to name a few. A brief description of the Payload cameras, spacecraft bus elements and operational modes and few applications are presented.

  19. Improving chocolate flavor in poor-quality cocoa almonds by enzymatic treatment.

    Science.gov (United States)

    Oliveira, Hilana Salete Silva; Mamede, Maria Eugênia Oliveira; Góes-Neto, Aristóteles; Koblitz, Maria Gabriela Bello

    2011-01-01

    This paper proposes a method to enzymatically treat poor-quality cocoa almonds (known as "slate") to ensure the formation of chocolate flavor precursors. The production of flavor precursors improves the quality of these almonds, which are usually responsible for the low quality of the liquor produced. Proteases and carboxypeptidases from different sources were tested under various conditions. The different treatments were evaluated by chemical analysis (hydrolysis efficiency) and sensory analysis of the treated material compared to good-quality cocoa almonds. The results show that it is possible, through the use of microbial enzymes, to generate the mixture of compounds that will release, after roasting, the characteristic chocolate flavor in poor-quality almonds. However, it is necessary to optimize the conditions of enzymatic treatment to obtain better results and thus establish a process that can be used for industrial purposes for manufacturing cocoa and chocolate. The basidiomycete Moniliophtora perniciosa is the causative agent of witches' broom disease (WBD) of the cocoa tree, whose seeds are the source of chocolate. It is the most important phytopathological problem of cocoa-producing areas of the American continent, and has decimated the Brazilian cocoa industry. In Bahia (Brazil), M. perniciosa was identified in 1989 and, as a consequence of its spreading, the annual production of cocoa almonds dropped from 450,000 to 90,000 tons within 12 y, reducing export values from an all-time high of about US$ 1 billion to 110 million. The high incidence of WBD incapacitates Brazil to produce enough cocoa almonds even for the internal market, leading the country to import low-quality cocoa almonds mainly from African countries. Our work proposes an enzymatic treatment to increase the quality of that cocoa almonds and, consequently, to improve the quality of the chocolate produced and consumed in the country. © 2011 Institute of Food Technologists®

  20. Molecular detection and characterization of a phytoplasma from xianlajiao chili pepper in shaanxi province, china

    International Nuclear Information System (INIS)

    Guo, C.M.; Lu, M.H.; Zhao, Z.L.; Hu, J.C.; Nie, W.Y.; Guo, J.W.

    2017-01-01

    Surveys were performed in the main Xianlajiao chili pepper-producing areas of Shaanxi Province to determine whether a phytoplasma was associated with the incidence of Arbuscular Lobular Disease (ALD). During July 2012 and 2013, 92 and 86 chili pepper plants, respectively, showing ALD-like symptoms were collected from 12 counties and the cities of Baoji, Weinan, Xianyang, and Xian. Samples from paulownia trees and plantain with symptoms of paulownia witches' broom and little leaf, respectively, located in pepper fields in Baoji city, Fengxiang county were also collected. Universal DNA primers for amplification of the phytoplasma 16S rRNA gene were used for nested PCR assays and DNA sequencing. Phytoplasma DNA was amplified from two chili pepper plants, the paulownia trees, and the plantain collected from Baoji city. The phylogenetic analysis of 16S rDNA sequences of the phytoplasmas detected in the chili pepper confirmed that these phytoplasmas are members of the 16SrI group "Candidatus Phytoplasma asteris". The results of virtual RFLP analysis and sequence homology comparison showed that the two Xianlajiao phytoplasmas have high homology with phytoplasmas 16SrI-B and 16SrI-M. Transmission electron microscopy assays revealed the presence of typical phytoplasma pleomorphic bodies in the phloem of phytoplasma-infected Xianlajiao chili pepper plants. Although our results did not establish a strong association between the presence of the phytoplasma and ALD, the simultaneous detection of a 16SrI phytoplasma in two symptomatic Xianlajiao chili peppers, the paulownia trees, and the plantain suggests a complex epidemiology related to the 16SrI phytoplasma pathogen in these new plant hosts. (author)

  1. First Microsatellite Markers Developed from Cupuassu ESTs: Application in Diversity Analysis and Cross-Species Transferability to Cacao

    Science.gov (United States)

    Ferraz dos Santos, Lucas; Moreira Fregapani, Roberta; Falcão, Loeni Ludke; Togawa, Roberto Coiti; Costa, Marcos Mota do Carmo; Lopes, Uilson Vanderlei; Peres Gramacho, Karina; Alves, Rafael Moyses

    2016-01-01

    The cupuassu tree (Theobroma grandiflorum) (Willd. ex Spreng.) Schum. is a fruitful species from the Amazon with great economical potential, due to the multiple uses of its fruit´s pulp and seeds in the food and cosmetic industries, including the production of cupulate, an alternative to chocolate. In order to support the cupuassu breeding program and to select plants presenting both pulp/seed quality and fungal disease resistance, SSRs from Next Generation Sequencing ESTs were obtained and used in diversity analysis. From 8,330 ESTs, 1,517 contained one or more SSRs (1,899 SSRs identified). The most abundant motifs identified in the EST-SSRs were hepta- and trinucleotides, and they were found with a minimum and maximum of 2 and 19 repeats, respectively. From the 1,517 ESTs containing SSRs, 70 ESTs were selected based on their functional annotation, focusing on pulp and seed quality, as well as resistance to pathogens. The 70 ESTs selected contained 77 SSRs, and among which, 11 were polymorphic in cupuassu genotypes. These EST-SSRs were able to discriminate the cupuassu genotype in relation to resistance/susceptibility to witches’ broom disease, as well as to pulp quality (SST/ATT values). Finally, we showed that these markers were transferable to cacao genotypes, and that genome availability might be used as a predictive tool for polymorphism detection and primer design useful for both Theobroma species. To our knowledge, this is the first report involving EST-SSRs from cupuassu and is also a pioneer in the analysis of marker transferability from cupuassu to cacao. Moreover, these markers might contribute to develop or saturate the cupuassu and cacao genetic maps, respectively. PMID:26949967

  2. Aflatoxins and ochratoxin A in different cocoa clones (Theobroma cacao L.) developed in the southern region of Bahia, Brazil.

    Science.gov (United States)

    Maciel, Leonardo Fonseca; Felício, Ana Lúcia de Souza Madureira; Miranda, Lucas Caldeirão Rodrigues; Pires, Tassia Cavalcante; Bispo, Eliete da Silva; Hirooka, Elisa Yoko

    2018-01-01

    Brazil is the sixth largest producer of cocoa beans in the world, after Côte d'Ivoire, Ghana, Indonesia, Nigeria and Cameroon. The southern region of Bahia stands out as the country's largest producer, accounting for approximately 60% of production. Due to damage caused by infestation of the cocoa crop with the fungus Moniliophthora perniciosa, which causes 'witch's broom disease', research in cocoa beans has led to the cloning of species that are resistant to the disease; however, there is little information about the development of other fungal genera in these clones, such as Aspergillus, which do not represent a phytopathogenicity problem but can grow during the pre-processing of cocoa beans and produce mycotoxins. Thus, the aim of this work was to determine the presence of aflatoxin (AF) and ochratoxin A (OTA) in cocoa clones developed in Brazil. Aflatoxin and ochratoxin A contamination were determined in 130 samples from 13 cocoa clones grown in the south of Bahia by ultra-performance liquid chromatography with a fluorescence detector. The method was evaluated for limit of detection (LOD) (0.05-0.90 μg kg -1 ), limit of quantification (0.10-2.50 μg kg -1 ) and recovery (RSD) (89.40-95.80%) for AFB 1 , AFB 2 , AFG 1 , AFG 2 and OTA. Aflatoxin contamination was detected in 38% of the samples in the range of

  3. Atividade de enzimas associadas ao estado de indução em mudas de cacaueiro expostas a dois actinomicetos residentes de filoplano Activity of enzymes associates of induced resistance on cocoa seedlings exposed of two actinomycetes phylloplane residents

    Directory of Open Access Journals (Sweden)

    Dirceu Macagnan

    2008-02-01

    Full Text Available Dois antagonistas selecionados para o biocontrole da vassoura-de-bruxa do cacaueiro foram avaliados quanto à capacidade em ativar mecanismos de defesa de plantas contra patógenos. Para tanto, mudas seminais de cacaueiro "comum" foram cultivadas em casa-de-vegetação por 30 dias e expostas aos antagonistas aplicados a mudas de cacaueiro por atomização, individualmente e em associação. O primeiro par de folhas das mudas dos diferentes tratamentos foi coletado aos dois, quatro, 12 e 24 dias após a exposição aos antagonistas. Foi quantificada a atividade de peroxidases, polifenoloxidases, quitinases e beta-1,3-glucanases no material coletado. Observou-se um aumento na atividade de peroxidases e polifenoloxidases nos primeiros dias após a exposição das mudas, especialmente ao isolado Ac26. Não foi observado efeito aditivo ou sinergístico nas mudas expostas aos dois isolados simultaneamente.Two antagonists selected for the biocontrol of cocoa witches' broom were investigated for their ability in triggering increases in the activity of enzymes associated to induced resistance. In a greenhouse, thirty days old cocoa seedlings were exposed t antagonists by spraying a propagule suspension of every antagonist or a mixture of them. At two, four 12 and 24 days exposing plants to the antagonists, the first leaf pair of every plant was excised and used for quantifying the activity of peroxidases, poly-phenol-oxidases, chitinases and beta-1,3-glucanases. There were increases in activity of peroxidases, poly-phenol-oxidases, mainly in the case of isolate Ac26. Additive or synergistic effects were not observed as a consequence of exposing plants to both antagonists together.

  4. Alaskan birds at risk: Widespread beak deformities in resident species

    Science.gov (United States)

    Van Hemert, Caroline R.

    2007-01-01

    The team creeps silently across a well-tended lawn, eyes drawn to a small wooden box perched several meters up a lone birch tree. The first biologist is armed with a broom in one hand and a bug net in the other. Her partner wields a lunchbox-sized plastic case and a tree-climbing ladder that looks like an oversized radio antenna. A neighbor peers out her window from across the street to watch the unusual spectacle.A small black-and-white bird zips toward the box’s tiny, round opening and both women raise binoculars to their eyes in synchrony. A specific combination of metal and colored plastic bands on the bird’s legs identify this Black-capped Chickadee, which was banded two years earlier as a nestling. “It’s the female,” Colleen Handel whispers, and Lisa Pajot nods as they duck behind the cover of a large spruce tree. The bird - named “Red-white-red”, in reference to her color bands - appeared healthy in the nest as well as the following winter, when she was caught in a mist net set up nearby. The next summer, however, “Red-white-red” appeared at a residential nest box with a severely deformed beak. The overgrowth worsened, and, now, the upper mandible curves down and back toward her breast, while the lower extends up, crossing the upper at a nearly 90-degree angle. The effect is sobering. Even from a distance, this teacup-sized bird carries a conspicuous appendage that more closely resembles a pair of mangled scissors than any recognizable seed-cracking beak.

  5. Towards an integrated approach to health and medicine in Africa.

    Science.gov (United States)

    Batisai, Kezia

    2016-12-01

    This article frames the intersections of medicine and humanities as intrinsic to understanding the practice of health care in Africa. Central to this manuscript, which draws on empirical findings on the interplay between HIV and AIDS and alternative medicine in Zimbabwe is the realisation that very limited research has been undertaken to examine 'HIV/AIDS patient behaviour' with respect to choice of therapy on the continent [Bene, M. & Darkoh, M. B. K. (2014). The Constraints of Antiretroviral Uptake in Rural Areas: The Case of Thamaga and Surrounding Villages, Botswana. Journal of Social Aspects of HIV/AIDS, 11(1), 167-177. doi: 10.1080/17290376.2014.972057 ; Chavunduka, G. (1998). Professionalisation of Traditional Medicine in Zimbabwe, Harare, Jongwe Printers; O'Brien, S. & Broom, A. (2014). HIV in (and out of) the Clinic: Biomedicine, Traditional Medicine and Spiritual Healing in Harare. Journal of Social Aspects of HIV/AIDS, 11(1), 94-104. doi: 10.1080/17290376.2014.938102 ]. As such, a social approach to health-seeking behaviour questions how decisions about alternative therapies including herbal remedies, traditional healing and faith healing are made. The paper unpacks the realities around how people living with HIV and AIDS - who span different age groups and profess various religious backgrounds, faced with an insurmountable health challenge against a background of limited resources and no cure for the virus - often experience shifts in health-seeking behaviour. Grappling with seemingly simple questions about 'when, where and how to seek medical attention', the paper provides pointers to therapy choices and health-seeking behaviour; and it serves as a route into deeper and intense healthcare practice explorations. In conclusion, the paper proposes that medicine and the humanities should engage seriously with those social aspects of HIV and AIDS which call for an integrated approach to healthcare practice in Africa. If combined, medicine and the humanities

  6. Moniliophthora perniciosa necrosis- and ethylene-inducing protein 2 (MpNep2 as a metastable dimer in solution: structural and functional implications.

    Directory of Open Access Journals (Sweden)

    Guilherme A P de Oliveira

    Full Text Available Understanding how Nep-like proteins (NLPs behave during the cell cycle and disease progression of plant pathogenic oomycetes, fungi and bacteria is crucial in light of compelling evidence that these proteins play a role in Witches` Broom Disease (WBD of Theobroma cacao, one of the most important phytopathological problems to afflict the Southern Hemisphere. The crystal structure of MpNep2, a member of the NLP family and the causal agent of WBD, revealed the key elements for its activity. This protein has the ability to refold after heating and was believed to act as a monomer in solution, in contrast to the related homologs MpNep1 and NPP from the oomyceteous fungus Phytophthora parasitica. Here, we identify and characterize a metastable MpNep2 dimer upon over-expression in Escherichia coli using different biochemical and structural approaches. We found using ultra-fast liquid chromatography that the MpNep2 dimer can be dissociated by heating but not by dilution, oxidation or high ionic strength. Small-angle X-ray scattering revealed a possible tail-to-tail interaction between monomers, and nuclear magnetic resonance measurements identified perturbed residues involved in the putative interface of interaction. We also explored the ability of the MpNep2 monomer to refold after heating or chemical denaturation. We observed that MpNep2 has a low stability and cooperative fold that could be an explanation for its structure and activity recovery after stress. These results can provide new insights into the mechanism for MpNep2's action in dicot plants during the progression of WBD and may open new avenues for the involvement of NLP- oligomeric species in phytopathological disorders.

  7. Moniliophthora perniciosa necrosis- and ethylene-inducing protein 2 (MpNep2) as a metastable dimer in solution: structural and functional implications.

    Science.gov (United States)

    de Oliveira, Guilherme A P; Pereira, Elen G; Dias, Cristiano V; Souza, Theo L F; Ferretti, Giulia D S; Cordeiro, Yraima; Camillo, Luciana R; Cascardo, Júlio; Almeida, Fabio C; Valente, Ana Paula; Silva, Jerson L

    2012-01-01

    Understanding how Nep-like proteins (NLPs) behave during the cell cycle and disease progression of plant pathogenic oomycetes, fungi and bacteria is crucial in light of compelling evidence that these proteins play a role in Witches` Broom Disease (WBD) of Theobroma cacao, one of the most important phytopathological problems to afflict the Southern Hemisphere. The crystal structure of MpNep2, a member of the NLP family and the causal agent of WBD, revealed the key elements for its activity. This protein has the ability to refold after heating and was believed to act as a monomer in solution, in contrast to the related homologs MpNep1 and NPP from the oomyceteous fungus Phytophthora parasitica. Here, we identify and characterize a metastable MpNep2 dimer upon over-expression in Escherichia coli using different biochemical and structural approaches. We found using ultra-fast liquid chromatography that the MpNep2 dimer can be dissociated by heating but not by dilution, oxidation or high ionic strength. Small-angle X-ray scattering revealed a possible tail-to-tail interaction between monomers, and nuclear magnetic resonance measurements identified perturbed residues involved in the putative interface of interaction. We also explored the ability of the MpNep2 monomer to refold after heating or chemical denaturation. We observed that MpNep2 has a low stability and cooperative fold that could be an explanation for its structure and activity recovery after stress. These results can provide new insights into the mechanism for MpNep2's action in dicot plants during the progression of WBD and may open new avenues for the involvement of NLP- oligomeric species in phytopathological disorders.

  8. Band-to-Band Misregistration of the Images of MODIS Onboard Calibrators and Its Impact on Calibration

    Science.gov (United States)

    Wang, Zhipeng; Xiong, Xiaoxiong

    2017-01-01

    The Moderate Resolution Imaging Spectroradiometer (MODIS) instruments aboard Terra and Aqua satellites are radiometrically calibrated on-orbit with a set of onboard calibrators (OBCs), including a solar diffuser, a blackbody, and a space view port through which the detectors can view the dark space. As a whisk-broom scanning spectroradiometer, thirty-six MODIS spectral bands are assembled in the along-scan direction on four focal plane assemblies (FPAs). These bands capture images of the same target sequentially with the motion of a scan mirror. Then the images are coregistered onboard by delaying the appropriate band-dependent amount of time, depending on the band locations on the FPA. While this coregistration mechanismis functioning well for the far-field remote targets such as earth view scenes or the moon, noticeable band-to-band misregistration in the along-scan direction has been observed for near field targets, particularly in OBCs. In this paper, the misregistration phenomenon is presented and analyzed. It is concluded that the root cause of the misregistration is that the rotating element of the instrument, the scan mirror, is displaced from the focus of the telescope primary mirror. The amount of the misregistrationis proportional to the band location on the FPA and is inversely proportional to the distance between the target and the scan mirror. The impact of this misregistration on the calibration of MODIS bands is discussed. In particular, the calculation of the detector gain coefficient m1of bands 8-16 (412 nm 870 nm) is improved by up to 1.5% for Aqua MODIS.

  9. Band-to-Band Misregistration of the Images of MODIS On-Board Calibrators and Its Impact to Calibration

    Science.gov (United States)

    Wang, Zhipeng; Xiong, Xiaoxiong

    2017-01-01

    The MODIS instruments aboard Terra and Aqua satellites are radiometrically calibrated on-orbit with a set of onboard calibrators (OBC) including a solar diffuser (SD), a blackbody (BB) and a space view (SV) port through which the detectors can view the dark space. As a whisk-broom scanning spectroradiometer, thirty-six MODIS spectral bands are assembled in the along-scan direction on four focal plane assemblies (FPA). These bands capture images of the same target sequentially with the motion of a scan mirror. Then the images are co-registered on board by delaying appropriate band dependent amount of time depending on the band locations on the FPA. While this co-registration mechanism is functioning well for the "far field" remote targets such as Earth view (EV) scenes or the Moon, noticeable band-to-band misregistration in the along-scan direction has been observed for near field targets, in particular the OBCs. In this paper, the misregistration phenomenon is presented and analyzed. It is concluded that the root cause of the misregistration is that the rotating element of the instrument, the scan mirror, is displaced from the focus of the telescope primary mirror. The amount of the misregistration is proportional to the band location on the FPA and is inversely proportional to the distance between the target and the scan mirror. The impact of this misregistration to the calibration of MODIS bands is discussed. In particular, the calculation of the detector gain coefficient m1 of bands 8-16 (412 nm 870 nm) is improved by up to 1.5% for Aqua MODIS.

  10. The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula.

    Science.gov (United States)

    Melo-Ferreira, J; Boursot, P; Randi, E; Kryukov, A; Suchentrunk, F; Ferrand, N; Alves, P C

    2007-02-01

    The climatic fluctuations during glaciations have affected differently arctic and temperate species. In the northern hemisphere, cooling periods induced the expansion of many arctic species to the south, while temperate species were forced to retract in southern refugia. Consequently, in some areas the alternation of these species set the conditions for competition and eventually hybridization. Hares in the Iberian Peninsula appear to illustrate this phenomenon. Populations of Iberian hare (Lepus granatensis), brown hare (Lepus europaeus) and broom hare (Lepus castroviejoi) in Northern Iberia harbour mitochondrial haplotypes from the mountain hare (Lepus timidus), a mainly boreal and arctic species presently absent from the peninsula. To understand the history of this past introgression we analysed sequence variation and geographical distribution of mitochondrial control region and cytochrome b haplotypes of L. timidus origin found in 378 specimens of these four species. Among 124 L. timidus from the Northern Palaearctic and the Alps we found substantial nucleotide diversity (2.3%) but little differentiation between populations. Based on the mismatch distribution of the L. timidus sequences, this could result from an expansion at a time of temperature decrease favourable to this arctic species. The nucleotide diversity of L. timidus mtDNA found in Iberian L. granatensis, L. europaeus and L. castroviejoi (183, 70 and 1 specimens, respectively) was of the same order as that in L. timidus over its range (1.9%), suggesting repeated introgression of multiple lineages. The structure of the coalescent of L. granatensis sequences indicates that hybridization with L. timidus was followed by expansion of the introgressed haplotypes, as expected during a replacement with competition, and occurred when temperatures started to rise, favouring the temperate species. Whether a similar scenario explains the introgression into Iberian L. europaeus remains unclear but it is possible

  11. Rugged: an operational, open-source solution for Sentinel-2 mapping

    Science.gov (United States)

    Maisonobe, Luc; Seyral, Jean; Prat, Guylaine; Guinet, Jonathan; Espesset, Aude

    2015-10-01

    When you map the entire Earth every 5 days with the aim of generating high-quality time series over land, there is no room for geometrical error: the algorithms have to be stable, reliable, and precise. Rugged, a new open-source library for pixel geolocation, is at the geometrical heart of the operational processing for Sentinel-2. Rugged performs sensor-to-terrain mapping taking into account ground Digital Elevation Models, Earth rotation with all its small irregularities, on-board sensor pixel individual lines-of-sight, spacecraft motion and attitude, and all significant physical effects. It provides direct and inverse location, i.e. it allows the accurate computation of which ground point is viewed from a specific pixel in a spacecraft instrument, and conversely which pixel will view a specified ground point. Direct and inverse location can be used to perform full ortho-rectification of images and correlation between sensors observing the same area. Implemented as an add-on for Orekit (Orbits Extrapolation KIT; a low-level space dynamics library), Rugged also offers the possibility of simulating satellite motion and attitude auxiliary data using Orekit's full orbit propagation capability. This is a considerable advantage for test data generation and mission simulation activities. Together with the Orfeo ToolBox (OTB) image processing library, Rugged provides the algorithmic core of Sentinel-2 Instrument Processing Facilities. The S2 complex viewing model - with 12 staggered push-broom detectors and 13 spectral bands - is built using Rugged objects, enabling the computation of rectification grids for mapping between cartographic and focal plane coordinates. These grids are passed to the OTB library for further image resampling, thus completing the ortho-rectification chain. Sentinel-2 stringent operational requirements to process several terabytes of data per week represented a tough challenge, though one that was well met by Rugged in terms of the robustness and

  12. Changes in Sugary Beverage Consumption and Public Perceptions in Upstate New York After Implementation of a Community Awareness Campaign and Healthier Vending Strategies.

    Science.gov (United States)

    Durant, Danielle J; Lowenfels, Ann; Ren, Jia; Brissette, Ian; Martin, Erika G

    2018-02-23

    We evaluated the impact of a community-based healthy beverage procurement and serving practices program, and educational media campaign, on residents' behaviors and beliefs regarding sugary beverages. Repeated cross-sectional population surveys in 2013 and 2014 were conducted, as well as semistructured interviews with key informants. We employed multivariate differences-in-differences regression analysis, adjusting for demographics and weight status, using the survey data. Key informant interviews were reviewed for common themes. Three rural counties in upstate New York with high prevalence of children living in poverty and childhood obesity. Residents of Broome, Cattaraugus, and Chautauqua, with Chemung as a control, reached through cross-sectional random-digit-dial landline and cellular telephones, and practitioners involved in intervention implementation. Community organizations were encouraged through presentations to leadership to adopt healthier vending policies, providing more low- and no-sugar options, and were provided assistance with implementation. In addition, a media campaign supported by presentations to the public aimed to educate residents regarding the health consequences of sugary beverage consumption. The survey measured population demographics and sugary beverage consumption frequency, availability, beliefs about harmfulness, and support for regulation, pre- and postintervention. Key informant interviews elicited perceived program challenges and successes. Compared with temporal trends in the control county, availability of regular soda in the intervention counties decreased (differences-in-differences estimator: β = -.341, P = .04) and support for regulation increased (differences-in-differences estimator: β = .162, P = .02). However, there were no differences regarding beliefs about harmfulness or consumption. Practitioners confirmed that the intervention increased awareness but was insufficient to spur action. Although public education on

  13. A comparison study of the inflammatory response in Holstein Friesian versus a local cattle breed (Rendena

    Directory of Open Access Journals (Sweden)

    Joel Fernando Soares Filipe

    2017-06-01

    Full Text Available The selective pressure for increased milk production brought about great difficulties in the adaptation of cows to their environment. However, not much is known about the biological mechanisms behind the relationship between genetic selection and higher risk of metabolic and infectious diseases (Oltenacu, P.A., and Broom, D.M., 2010. It is well known that during the calving period, high-yielding dairy cattle are more susceptible to common environmental stressors, affecting disease occurrence and milk production levels (Bach, A., 2011. In this study we compared innate immune response of 6 Holstein Friesian (HF and 4 Rendena (R cows reared in the same farm and under the same management conditions. Milk and blood samples were collected at dry-off (T1, 1 day after calving (T2, 7-10 days after calving (T3, and 30 days after calving (T4. Milk samples were subjected to measurement of the inflammation marker cathelicidin and assessment of different innate immune-related mediators; blood samples were used for the analysis of plasma metabolites indicators of systemic inflammation. HF cows showed a more severe systemic inflammatory response at T2 and T3 in comparison with R cows (fig.1. Concerning the milk protein abundance profile, higher levels in R cows were observed in the colostrum (T2. Moreover, at all time points HF showed higher levels of the inflammation marker cathelicidin in milk (fig.2. In addition, the expression of innate immune related genes were different in HF compared with R (fig.3. Our results suggest that HF cows develop a systemic and local mammary inflammatory response that confirms their higher susceptibility to disease compared with R cows. Our findings reveal that fundamental effector activities of innate immunity in the mammary gland could be included in the breeding programs of HF cows and suggest the spread of autochthonous cow farming in order to maintain the biodiversity, reduce the antibiotic consumption and production of

  14. Potential relationships between morphological differentiation and mutants with high nuclease P1 production of Penicillium citrinum

    Energy Technology Data Exchange (ETDEWEB)

    Xinle, Liang; Qian, Shou; Hong, Zhang; Min, Chen [Department of Biotechnology, Zhejiang Gongshang University, Hangzhou, Zhejiang (China); Xuan, Liu [Beihai Institute of Environmental Science, Beihai, Guangxi (China)

    2009-08-15

    Diversification of colony characteristics of mutants derived from Penicillium citrinum CICC 4011 treated with {sup 60}Co {gamma}-irradiation and protoplast fusion were analyzed. There were distinct differences among mutants with different nuclease P1 activity, especially in pigment productivity. Color of colony was changed from the original green to white, grey-green, or yellow-green etc., while the nuclease P1 activity would be fluctuated with the color change. The hypothesis was suggested that there would be a relationship between pigments and nuclease P1 production. Mutants with grey-green colony would give out high nuclease P1 outputs in a high probability such as mutant J1Y6 (nuclease P1 activity, 167.3U/ml) and fusant F-13 (nuclease P1 activity, 568.7U/ml), while others with deep-green colony observed low nuclease outputs. Four variation strains didn't show any significant difference in growth rate. Broom branches of conidiophore stem in J1Y6 and F-13 were obviously reduced, conidiophores productivity reduced, but hyphae growth haled. These suggested that nuclease P1 production was associated with growth phase, but pigment synthesis course wasn't. RAPD from 6 randomly selected primers was used to analyze the polymorphic rich of the four strains, the results showed that there were 70 percent polymorphism detection rate among those. UPGMA cluster analysis and genetic map constructed by NTSYS-PC software, which showed that J1Y6 and F-14 were clustered as one group at similar coefficient 0.9, where there was an appear distance from the group of 4011 and F-R-33 strains (similar coefficient 0.8). (authors)

  15. Potential relationships between morphological differentiation and mutants with high nuclease P1 production of Penicillium citrinum

    International Nuclear Information System (INIS)

    Liang Xinle; Shou Qian; Zhang Hong; Chen Min; Liu Xuan

    2009-01-01

    Diversification of colony characteristics of mutants derived from Penicillium citrinum CICC 4011 treated with 60 Co γ-irradiation and protoplast fusion were analyzed. There were distinct differences among mutants with different nuclease P1 activity, especially in pigment productivity. Color of colony was changed from the original green to white, grey-green, or yellow-green etc., while the nuclease P1 activity would be fluctuated with the color change. The hypothesis was suggested that there would be a relationship between pigments and nuclease P1 production. Mutants with grey-green colony would give out high nuclease P1 outputs in a high probability such as mutant J1Y6( nuclease P1 activity, 167.3U/ml) and fusant F-13 (nuclease P1 activity, 568.7U/ml), while others with deep-green colony observed low nuclease outputs. Four variation strains didn't show any significant difference in growth rate. Broom branches of conidiophore stem in J1Y6 and F-13 were obviously reduced, conidiophores productivity reduced, but hyphae growth haled. These suggested that nuclease P1 production was associated with growth phase, but pigment synthesis course wasn't. RAPD from 6 randomly selected primers was used to analyze the polymorphic rich of the four strains, the results showed that there were 70 percent polymorphism detection rate among those. UPGMA cluster analysis and genetic map constructed by NTSYS-PC software, which showed that J1Y6 and F-14 were clustered as one group at similar coefficient 0.9, where there was an appear distance from the group of 4011 and F-R-33 strains (similar coefficient 0.8). (authors)

  16. RIGOROUS PHOTOGRAMMETRIC PROCESSING OF CHANG'E-1 AND CHANG'E-2 STEREO IMAGERY FOR LUNAR TOPOGRAPHIC MAPPING

    Directory of Open Access Journals (Sweden)

    K. Di

    2012-07-01

    Full Text Available Chang'E-1(CE-1 and Chang'E-2(CE-2 are the two lunar orbiters of China's lunar exploration program. Topographic mapping using CE-1 and CE-2 images is of great importance for scientific research as well as for preparation of landing and surface operation of Chang'E-3 lunar rover. In this research, we developed rigorous sensor models of CE-1 and CE-2 CCD cameras based on push-broom imaging principle with interior and exterior orientation parameters. Based on the rigorous sensor model, the 3D coordinate of a ground point in lunar body-fixed (LBF coordinate system can be calculated by space intersection from the image coordinates of con-jugate points in stereo images, and the image coordinates can be calculated from 3D coordinates by back-projection. Due to uncer-tainties of the orbit and the camera, the back-projected image points are different from the measured points. In order to reduce these inconsistencies and improve precision, we proposed two methods to refine the rigorous sensor model: 1 refining EOPs by correcting the attitude angle bias, 2 refining the interior orientation model by calibration of the relative position of the two linear CCD arrays. Experimental results show that the mean back-projection residuals of CE-1 images are reduced to better than 1/100 pixel by method 1 and the mean back-projection residuals of CE-2 images are reduced from over 20 pixels to 0.02 pixel by method 2. Consequently, high precision DEM (Digital Elevation Model and DOM (Digital Ortho Map are automatically generated.

  17. ETHNOBOTANICAL USES OF LANTANA TRIFOLIA L. AND SIDA CUNEIFOLIA ROXB. IN MUKUNGWE AND WABINYONYI SUB-COUNTIES OF CENTRAL UGANDA

    Directory of Open Access Journals (Sweden)

    Rebecca Nalubega

    2013-06-01

    Full Text Available Aim: This was an ethnobotanical study that was carried out to establish the traditional uses of Lantana trifolia L. and Sida cuneifolia Roxb. plants in selected parts of Central Uganda. Methods: The ethnobotanical study was done in August and September, 2012 in Mukungwe and Wabinyonyi sub-counties in Masaka and Nakasongola Districts respectively located in Central Uganda. Study sites and respondents were purposefully selected and information was obtained through semi-structured interview guides, key informant interview guides as well as observations. Eighty respondents were considered for semi-structured interviews and 15 for key informant interviews. Results: Seven ethnobotanical uses for Lantana trifolia were cited by respondents and majority (46.25% of them used it as a herbal remedy. As a herbal remedy, Lantana trifolia managed 13 human disease conditions and mainly used in the management of cough and common colds by 22.5% of the respondents. Four ethnobotanical uses were cited for Sida cuneifolia and majority of the respondents (62.5% used it as a herbal remedy as well as sweeping brooms. As a herbal remedy, Sida cuneifolia was reported to be useful in management of 12 disease conditions, fractures and sprains (bone setting being mentioned by the majority of the of respondents (36.25 %. Conclusion: In conclusion, Lantana trifolia and Sida cuneifolia were culturally important ethnomedicines. Scientific validation of traditional claims as well as conservation of these plants should be encouraged in order to preserve and promote their use. [J Intercult Ethnopharmacol 2013; 2(3.000: 155-164

  18. Emerging pests and diseases of South-east Asian cassava: a comprehensive evaluation of geographic priorities, management options and research needs.

    Science.gov (United States)

    Graziosi, Ignazio; Minato, Nami; Alvarez, Elizabeth; Ngo, Dung Tien; Hoat, Trinh Xuan; Aye, Tin Maung; Pardo, Juan Manuel; Wongtiem, Prapit; Wyckhuys, Kris Ag

    2016-06-01

    Cassava is a major staple, bio-energy and industrial crop in many parts of the developing world. In Southeast Asia, cassava is grown on >4 million ha by nearly 8 million (small-scale) farming households, under (climatic, biophysical) conditions that often prove unsuitable for many other crops. While SE Asian cassava has been virtually free of phytosanitary constraints for most of its history, a complex of invasive arthropod pests and plant diseases has recently come to affect local crops. We describe results from a region-wide monitoring effort in the 2014 dry season, covering 429 fields across five countries. We present geographic distribution and field-level incidence of the most prominent pest and disease invaders, introduce readily-available management options and research needs. Monitoring work reveals that several exotic mealybug and (red) mite species have effectively colonised SE Asia's main cassava-growing areas, occurring in respectively 70% and 54% of fields, at average field-level incidence of 27 ± 2% and 16 ± 2%. Cassava witches broom (CWB), a systemic phytoplasma disease, was reported from 64% of plots, at incidence levels of 32 ± 2%. Although all main pests and diseases are non-natives, we hypothesise that accelerating intensification of cropping systems, increased climate change and variability, and deficient crop husbandry are aggravating both organism activity and crop susceptibility. Future efforts need to consolidate local capacity to tackle current (and future) pest invaders, boost detection capacity, devise locally-appropriate integrated pest management (IPM) tactics, and transfer key concepts and technologies to SE Asia's cassava growers. Urgent action is needed to mobilise regional as well as international scientific support, to effectively tackle this phytosanitary emergency and thus safeguard the sustainability and profitability of one of Asia's key agricultural commodities. © 2016 Society of Chemical Industry. © 2016

  19. Phytoplasmas: bacteria that manipulate plants and insects.

    Science.gov (United States)

    Hogenhout, Saskia A; Oshima, Kenro; Ammar, El-Desouky; Kakizawa, Shigeyuki; Kingdom, Heather N; Namba, Shigetou

    2008-07-01

    Superkingdom Prokaryota; Kingdom Monera; Domain Bacteria; Phylum Firmicutes (low-G+C, Gram-positive eubacteria); Class Mollicutes; Candidatus (Ca.) genus Phytoplasma. Ca. Phytoplasma comprises approximately 30 distinct clades based on 16S rRNA gene sequence analyses of approximately 200 phytoplasmas. Phytoplasmas are mostly dependent on insect transmission for their spread and survival. The phytoplasma life cycle involves replication in insects and plants. They infect the insect but are phloem-limited in plants. Members of Ca. Phytoplasma asteris (16SrI group phytoplasmas) are found in 80 monocot and dicot plant species in most parts of the world. Experimentally, they can be transmitted by approximately 30, frequently polyphagous insect species, to 200 diverse plant species. In plants, phytoplasmas induce symptoms that suggest interference with plant development. Typical symptoms include: witches' broom (clustering of branches) of developing tissues; phyllody (retrograde metamorphosis of the floral organs to the condition of leaves); virescence (green coloration of non-green flower parts); bolting (growth of elongated stalks); formation of bunchy fibrous secondary roots; reddening of leaves and stems; generalized yellowing, decline and stunting of plants; and phloem necrosis. Phytoplasmas can be pathogenic to some insect hosts, but generally do not negatively affect the fitness of their major insect vector(s). In fact, phytoplasmas can increase fecundity and survival of insect vectors, and may influence flight behaviour and plant host preference of their insect hosts. The most common practices are the spraying of various insecticides to control insect vectors, and removal of symptomatic plants. Phytoplasma-resistant cultivars are not available for the vast majority of affected crops.

  20. Integrative Review of the Intersection of Green Space and Neighborhood Violence.

    Science.gov (United States)

    Mancus, Gibran C; Campbell, Jacquelyn

    2018-03-01

    To systematically analyze evidence about the impact of green space on the perception and actual safety of residents of urban neighborhoods. Systematic review of green space and violence based on Broome review criteria. One landmark study prompted the initial hand search and identification of search terms. Twenty-three quantitative, five qualitative, and two mixed-methods studies were found in the urban planning, public health, medical, and psychological literature that met the following criteria: analyzed green space and violence as factors in the perception of safety as an outcome measure, including action taken by being outside for recreation, exercise, or self-report in the survey. Findings were inconsistent regarding the direct relationship between perception of safety and green space when using recreation and exercise as a proxy for perception of safety. Findings regarding perception of safety in surveys were limited but indicated a positive correlation with green space. There is sufficient evidence to conclude that the perception of safety is supported by quality, accessibility, and aesthetic dimensions of neighborhood green space, and the perception of safety is often unrelated to actual crime rates. The science for understanding mechanisms between green space and violence as part of environmental health has been insufficiently developed and requires further study. Environmental health, including green space, is central to health promotion, and understanding is key to preventing the epidemic of violence. This article provides a summary of research related to green space, violence in communities, perception of safety, and violent crime in those communities. It identifies gaps in our knowledge where future research is needed. Nurses have the opportunity to lead the development, implementation, and evaluation of evidence-based interventions and policies addressing the inequality of quality and quantity of green space in the built and natural environment and

  1. Morphotectonic and neotectonic control on river pattern in the Sierra de la Cantera piedmont, Central Precordillera, province of San Juan, Argentina

    Science.gov (United States)

    Perucca, Laura P.; Rothis, Martín; Vargas, Horacio N.

    2014-01-01

    The drainage pattern on the western piedmont of the Sierra de La Cantera is divergent, typical of alluvial fans and showing anomalies that are directly related to the trace of La Cantera thrust. In previous studies, two types of anomalies were identified: upstream of the fault scarp, rivers have a broom-shaped pattern, while downstream - in the hanging block - streams become denser, more sinuous and incised. In this contribution, these morphotectonic aspects were analyzed in detail, making direct and indirect analysis to quantify the relationship between these anomalies and the faults affecting alluvial fans. In addition, the influence of neotectonic activity on smaller water course patterns in the alluvial fan areas was investigated in order to find indicators of on-going vertical movements, since the spatial arrangements of these piedmont channels are determined by slope and structure, where active faults cause diversions or anomalies. Topographic profiles in two selected channels cutting across the trace of the fault were performed using a differential GPS in order to establish the relationship between the sinuosity and slope of these rivers. The results obtained allow us to state that the most sinuous channels have lower slopes and are located in the hanging wall of the fault. Morphometric analysis of scarps stated that active tectonics have played an essential role in controlling the drainage pattern in the piedmont, leading the rivers to adjust to these slope variations. Finally, based on the geomorphologic, stratigraphic, structural and seismological characteristics and parameters analyzed, La Cantera Thrust is considered a seismogenic source of significance to the nearby towns (> 700,000 inhabitants) and also to the large-scale dams built downstream along the San Juan River.

  2. Late Quaternary evolution of the La Cantera Fault System (Central Precordillera, Argentina): A morphotectonic and paleoseismic analysis

    Science.gov (United States)

    Perucca, Laura; Rothis, Martín; Bezerra, Francisco Hilario; Vargas, Nicolás; Lima, Jean

    2015-10-01

    The La Cantera Fault System (LCFS) is the most active Quaternary structure in the Central Precordillera of San Juan, in central-western Argentina; the system extends for 47 km along the intermountain valley that separates the Sierra de La Cantera and La Invernada, north of the San Juan River. The average fault trend is 20°; it dips at angles varying between 15° and 30° W in the northern section, to approximately 40° W in the central section, and up to 60° W in the southern section. The fault affects Holocene to recent alluvium deposits in the western piedmont of the Sierra de La Cantera and is defined by a series of landforms found in compressive tectonic environments, including simple and compound counterslope fault scarps, staircased alluvial terraces, sag ponds, flexural scarps, aligned springs, broom-shaped drainage patterns, river diversions, beheaded channels, changes in incision depths, sinuosity and a river gradient along channels. Trench investigations indicated that at least three events occurred in the past 1.1-10.1 ky. The topographic profiles of the selected channels and interfluves cutting across the northern and central trace of the fault were analyzed using a Stonex Vector GPS differential system to establish the relationship between the topography and slope of the rivers. This morphometric analysis of scarps indicates that active tectonics have played an essential role in controlling the drainage pattern in the piedmont, leading the rivers to adjust to these slope variations. Based on the analyzed geomorphologic, stratigraphic and structural characteristics, the LCFS is considered to be a relevant seismogenic source in the intraplate portion of southern South America, with a recurrence interval of at least 2000 ± 500 years for moderate magnitude earthquakes during the last 11,000 years.

  3. Personal exposure to inhalable cement dust among construction workers.

    Science.gov (United States)

    Peters, Susan; Thomassen, Yngvar; Fechter-Rink, Edeltraud; Kromhout, Hans

    2009-01-01

    Objective- A case study was carried out to assess cement dust exposure and its determinants among construction workers and for comparison among workers in cement and concrete production.Methods- Full-shift personal exposure measurements were performed and samples were analysed for inhalable dust and its cement content. Exposure variability was modelled with linear mixed models.Results- Inhalable dust concentrations at the construction site ranged from 0.05 to 34 mg/m(3), with a mean of 1.0 mg/m(3). Average concentration for inhalable cement dust was 0.3 mg/m(3) (GM; range 0.02-17 mg/m(3)). Levels in the ready-mix and pre-cast concrete plants were on average 0.5 mg/m(3) (GM) for inhalable dust and 0.2 mg/m(3) (GM) for inhalable cement dust. Highest concentrations were measured in cement production, particularly during cleaning tasks (inhalable dust GM = 55 mg/m(3); inhalable cement dust GM = 33 mg/m(3)) at which point the workers wore personal protective equipment. Elemental measurements showed highest but very variable cement percentages in the cement plant and very low percentages during reinforcement work and pouring. Most likely other sources were contributing to dust concentrations, particularly at the construction site. Within job groups, temporal variability in exposure concentrations generally outweighed differences in average concentrations between workers. 'Using a broom', 'outdoor wind speed' and 'presence of rain' were overall the most influential factors affecting inhalable (cement) dust exposure.Conclusion- Job type appeared to be the main predictor of exposure to inhalable (cement) dust at the construction site. Inhalable dust concentrations in cement production plants, especially during cleaning tasks, are usually considerably higher than at the construction site.

  4. Awareness and impact of the 'Bubblewrap' advertising campaign among Aboriginal smokers in Western Australia.

    Science.gov (United States)

    Boyle, Terry; Shepherd, Carrington C J; Pearson, Glenn; Monteiro, Heather; McAullay, Daniel; Economo, Kristina; Stewart, Susan

    2010-02-01

    Antismoking mass media campaigns have been shown to reduce smoking prevalence in the mainstream community, however there is little published research on their effect on Aboriginal Australian smokers. To evaluate the awareness and impact of a mainstream mass media advertising campaign (the 'Bubblewrap' campaign) on Aboriginal smokers in the state of Western Australia. A personal intercept survey was conducted in July 2008 across three sites (the Perth metropolitan area and the non-metropolitan towns of Kalgoorlie and Broome). An opportunity or convenience sampling strategy was used to recruit Aboriginal participants, and face-to-face interviews were conducted with 198 Aboriginal smokers to ascertain awareness of the campaign advertisements, whether they were seen as believable and relevant, and the impact the advertisements had on smoking behaviour. The majority of the participants interviewed had seen and/or heard the 'Bubblewrap' campaign advertisements, although there was considerably greater awareness of the television advertisement than the radio advertisements. Both forms of advertising were considered to be believable and relevant by the majority of Aboriginal smokers. Most of the smokers interviewed thought about cutting down and/or quitting after seeing or hearing the advertisements. Our findings suggest that mainstream antismoking mass media campaigns can positively influence the thoughts and behaviours that Aboriginal smokers have, and exhibit, towards quitting smoking. Notwithstanding this, advertisers should continue to look for better ways to incorporate Aboriginal themes in campaign messages. Future mainstream antismoking campaigns should source sufficient funds to ensure that advertising messages reach the large Aboriginal populations in regional and remote Australia.

  5. Authentication of Polygonati Odorati Rhizoma and other two Chinese Materia Medica of the Liliaceae family by pharmacognosy technique with GC-MS analysis.

    Science.gov (United States)

    Liu, Yingjiao; Liu, Canhuang; Yu, Yafei; Xu, Bei; Gong, Limin; Zeng, Xiaoyan; Xiao, Lan; Cheng, Qilai; Liu, Tasi

    2015-02-01

    Yuzhu (Polygonati Odorati Rhizoma), Kangdingyuzhu (Polygonati Prattii Rhizoma), and zhugenqiyuzhu (Disporopsis Fuscopictae Rhizoma) are of the same family, but of different genera. They have all often used in Chinese Materia Medica (CMM) as Polygonati Odorati Rhizoma in China market. Three species of CMM are confused. For better application, we need to identify these plants accurately. This study use pharmacognosy technique and GC-MS analysis, three species of CMM were authenticated. In macroscopic characteristics, the fruit of Polygonati Odorati Rhizoma is blue-black, while the other two are maroon and dark purple orderly. Nodes of Polygonati Odorati Rhizoma are upward and light uplift, about 1 cm spacing, while the other are not. As for microscopic characteristics, the cortex of Polygonati Odorati Rhizoma only occupies about 1/5 of the radius of the transverse section with inconspicuous endodermis, which is much smaller than others. The type of vascular bundles of Polygonati Odorati Rhizoma is closed collateral, but the other is amphivasal. Raphides of calcium oxalate are scattered, but Raphides of the other two are like brooms and neat rows. GC-MS analysis of essential oil could provide different characteristics to distinguish three species. Twenty-three compounds were identified from essential oil of Polygonati Odorati Rhizoma and the main components were n-hexadecanoic acid (49.45%), while n-hexadecanoic acid of the other two are 23.92% and 9.45%. The content of n-hexadecanoic is strongly different. This research was aimed to establish a method by pharmacognosy and GC-MS analysis to identify three CMM and for providing scientifical data to ensure accuracy of origin of three species. © 2014 Wiley Periodicals, Inc.

  6. DETERMINING SPECTRAL REFLECTANCE COEFFICIENTS FROM HYPERSPECTRAL IMAGES OBTAINED FROM LOW ALTITUDES

    Directory of Open Access Journals (Sweden)

    P. Walczykowski

    2016-06-01

    Full Text Available Remote Sensing plays very important role in many different study fields, like hydrology, crop management, environmental and ecosystem studies. For all mentioned areas of interest different remote sensing and image processing techniques, such as: image classification (object and pixel- based, object identification, change detection, etc. can be applied. Most of this techniques use spectral reflectance coefficients as the basis for the identification and distinction of different objects and materials, e.g. monitoring of vegetation stress, identification of water pollutants, yield identification, etc. Spectral characteristics are usually acquired using discrete methods such as spectrometric measurements in both laboratory and field conditions. Such measurements however can be very time consuming, which has led many international researchers to investigate the reliability and accuracy of using image-based methods. According to published and ongoing studies, in order to acquire these spectral characteristics from images, it is necessary to have hyperspectral data. The presented article describes a series of experiments conducted using the push-broom Headwall MicroHyperspec A-series VNIR. This hyperspectral scanner allows for registration of images with more than 300 spectral channels with a 1.9 nm spectral bandwidth in the 380- 1000 nm range. The aim of these experiments was to establish a methodology for acquiring spectral reflectance characteristics of different forms of land cover using such sensor. All research work was conducted in controlled conditions from low altitudes. Hyperspectral images obtained with this specific type of sensor requires a unique approach in terms of post-processing, especially radiometric correction. Large amounts of acquired imagery data allowed the authors to establish a new post- processing approach. The developed methodology allowed the authors to obtain spectral reflectance coefficients from a hyperspectral sensor

  7. The experiences of women with polycystic ovary syndrome on a very low-calorie diet

    Directory of Open Access Journals (Sweden)

    Love JG

    2016-07-01

    Full Text Available John G Love,1 John S McKenzie,2 Efsevia A Nikokavoura,3 John Broom,3 Catherine Rolland,3 Kelly L Johnston4,5 1School of Applied Social Studies, Faculty of Health & Social Care, Robert Gordon University, Aberdeen, UK; 2Rowett Institute of Health & Nutrition, University of Aberdeen, St Mary’s, Kings College, Aberdeen, UK; 3Centre for Obesity Research, Faculty of Health & Social Care, Robert Gordon University, Aberdeen, UK; 4LighterLife, Harlow, Essex, UK; 5Diabetes and Nutritional Sciences Division, Faculty of Health and Medical Sciences, Kings College London, London, UK Abstract: Polycystic ovary syndrome (PCOS is variously reported to affect between 5% and 26% of reproductive age women in the UK and accounts for up to 75% of women attending fertility clinics due to anovulation. The first-line treatment option for overweight/obese women with PCOS is diet and lifestyle interventions. However, optimal dietary guidelines are missing, with very little research having been done in this area. This paper presents the findings from a qualitative study (using semistructured interviews of ten obese women who had PCOS and who had used LighterLife Total (LLT, a commercial weight loss program which utilizes a very low-calorie diet in conjunction with behavioral change therapy underpinned by group support. We investigated the women’s history of obesity, their experiences of other diets compared with LLT, and the on-going impact that this has had on their lives. Findings show that most women reported greater success using this weight loss program in terms of achieving and maintaining weight loss when compared with other diets. Furthermore, all the women nominated LLT as their model weight loss intervention with only a few modifications. Keywords: PCOS, obesity, weight loss, diet

  8. The effect of very low-calorie diets on renal and hepatic outcomes: a systematic review

    Directory of Open Access Journals (Sweden)

    Roll

    2013-10-01

    Full Text Available Catherine Rolland,1 Alexandra Mavroeidi,2 Kelly L Johnston,3 John Broom1,31Centre for Obesity Research and Epidemiology (CORE, Faculty of Health and Social Care, Robert Gordon University, Aberdeen, Scotland, UK; 2School of Medical Sciences, College of Life Sciences and Medicine, University of Aberdeen, Aberdeen, Scotland, UK; 3LighterLife Ltd, Harlow, Essex, UKAbstract: Very low-calorie diets (VLCDs are an effective means by which to induce clinically significant weight loss. However, their acceptance by health care practitioners and the public is generally lower than that for other nonsurgical weight loss methods. Whilst there is currently little evidence to suggest they have any detrimental effect on hepatic and renal health, data assessing these factors remain limited. We carried out a systematic review of the literature on randomized controlled trials that had a VLCD component and that reported outcomes for hepatic and renal health, published between January 1980 and December 2012. Cochrane criteria were followed, and eight out of 196 potential articles met the inclusion criteria. A total of 548 participants were recruited across the eight studies. All eight studies reported significant weight loss following the VLCD. Changes in hepatic and renal outcomes were variable but generally led to either no change or improvements in either of these. Due to the heterogeneity in the quality and methodology of the studies included, the effect of VLCDs on hepatic and renal outcomes remains unclear at this stage. Further standardized research is therefore required to fully assess the impact of VLCDs on these outcome measures, to better guide clinical practice.Keywords: obesity, liver, kidney, weight loss, health

  9. Molecular Diagnosis of Phytoplasmas

    Directory of Open Access Journals (Sweden)

    C. Marzachì

    2004-08-01

    Full Text Available Phytoplasmas are wall-less prokaryotes associated with diseases in numerous plant species worldwide. In nature they are transmitted by phloem-sucking insects. Yellowing, decline, witches’ broom, leaf curl, floral virescence and phyllody are the most conspicuous symptoms associated with phytoplasmas, although infections are sometimes asymptomatic. Since phytoplasmas cannot be cultured in vitro, molecular techniques are needed for their diagnosis and characterization. The titer of phytoplasma cells in the phloem of infected plants may vary according to the season and the plant species, and it is often very low in woody hosts. Different DNA extraction procedures have therefore been tried out to obtain phytoplasma DNA at a concentration and purity high enough for effective diagnosis. DNA/DNA hybridization methods were reported in the nineties to be appropriate for the detection of phytoplasmas, but at present PCR is considered the most suitable. Universal and group-specific primers have been designed on the rRNA operon of the phytoplasma genome and on plasmid sequences. RFLP analysis of the obtained amplicons has classified these pathogens into major 16Sr RNA groups. Group-specific primers have also been designed on other genomic sequences. PCR is a very sensitive technique, but due to the low titre of phytoplasmas a further increase in sensitivity may be required for accurate diagnosis. This is routinely obtained with a second round of PCR (nested PCR. The drawback of nested PCR is that there is a greater chance of obtaining false positives due to contamination. Many authors have therefore developed protocols based on hybridization (PCR/dot blot or serological approaches (PCR/ELISA to increase the sensitivity and specificity of the direct PCR, reducing the risks due to nested PCR. Real time PCR protocols may also improve the sensitivity and specificity of the direct PCR assay.

  10. Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis.

    Science.gov (United States)

    Sugio, Akiko; Kingdom, Heather N; MacLean, Allyson M; Grieve, Victoria M; Hogenhout, Saskia A

    2011-11-29

    Phytoplasmas are insect-transmitted phytopathogenic bacteria that can alter plant morphology and the longevity and reproduction rates and behavior of their insect vectors. There are various examples of animal and plant parasites that alter the host phenotype to attract insect vectors, but it is unclear how these parasites accomplish this. We hypothesized that phytoplasmas produce effectors that modulate specific targets in their hosts leading to the changes in plant development and insect performance. Previously, we sequenced and mined the genome of Aster Yellows phytoplasma strain Witches' Broom (AY-WB) and identified 56 candidate effectors. Here, we report that the secreted AY-WB protein 11 (SAP11) effector modulates plant defense responses to the advantage of the AY-WB insect vector Macrosteles quadrilineatus. SAP11 binds and destabilizes Arabidopsis CINCINNATA (CIN)-related TEOSINTE BRANCHED1, CYCLOIDEA, PROLIFERATING CELL FACTORS 1 and 2 (TCP) transcription factors, which control plant development and promote the expression of lipoxygenase (LOX) genes involved in jasmonate (JA) synthesis. Both the Arabidopsis SAP11 lines and AY-WB-infected plants produce less JA on wounding. Furthermore, the AY-WB insect vector produces more offspring on AY-WB-infected plants, SAP11 transgenic lines, and plants impaired in CIN-TCP and JA synthesis. Thus, SAP11-mediated destabilization of CIN-TCPs leads to the down-regulation of LOX2 expression and JA synthesis and an increase in M. quadrilineatus progeny. Phytoplasmas are obligate inhabitants of their plant host and insect vectors, in which the latter transmits AY-WB to a diverse range of plant species. This finding demonstrates that pathogen effectors can reach beyond the pathogen-host interface to modulate a third organism in the biological interaction.

  11. Determining Spectral Reflectance Coefficients from Hyperspectral Images Obtained from Low Altitudes

    Science.gov (United States)

    Walczykowski, P.; Jenerowicz, A.; Orych, A.; Siok, K.

    2016-06-01

    Remote Sensing plays very important role in many different study fields, like hydrology, crop management, environmental and ecosystem studies. For all mentioned areas of interest different remote sensing and image processing techniques, such as: image classification (object and pixel- based), object identification, change detection, etc. can be applied. Most of this techniques use spectral reflectance coefficients as the basis for the identification and distinction of different objects and materials, e.g. monitoring of vegetation stress, identification of water pollutants, yield identification, etc. Spectral characteristics are usually acquired using discrete methods such as spectrometric measurements in both laboratory and field conditions. Such measurements however can be very time consuming, which has led many international researchers to investigate the reliability and accuracy of using image-based methods. According to published and ongoing studies, in order to acquire these spectral characteristics from images, it is necessary to have hyperspectral data. The presented article describes a series of experiments conducted using the push-broom Headwall MicroHyperspec A-series VNIR. This hyperspectral scanner allows for registration of images with more than 300 spectral channels with a 1.9 nm spectral bandwidth in the 380- 1000 nm range. The aim of these experiments was to establish a methodology for acquiring spectral reflectance characteristics of different forms of land cover using such sensor. All research work was conducted in controlled conditions from low altitudes. Hyperspectral images obtained with this specific type of sensor requires a unique approach in terms of post-processing, especially radiometric correction. Large amounts of acquired imagery data allowed the authors to establish a new post- processing approach. The developed methodology allowed the authors to obtain spectral reflectance coefficients from a hyperspectral sensor mounted on an

  12. Design and laboratory calibration of the compact pushbroom hyperspectral imaging system

    Science.gov (United States)

    Zhou, Jiankang; Ji, Yiqun; Chen, Yuheng; Chen, Xinhua; Shen, Weimin

    2009-11-01

    The designed hyperspectral imaging system is composed of three main parts, that is, optical subsystem, electronic subsystem and capturing subsystem. And a three-dimensional "image cube" can be obtained through push-broom. The fore-optics is commercial-off-the-shelf with high speed and three continuous zoom ratios. Since the dispersive imaging part is based on Offner relay configuration with an aberration-corrected convex grating, high power of light collection and variable view field are obtained. The holographic recording parameters of the convex grating are optimized, and the aberration of the Offner configuration dispersive system is balanced. The electronic system adopts module design, which can minimize size, mass, and power consumption. Frame transfer area-array CCD is chosen as the image sensor and the spectral line can be binned to achieve better SNR and sensitivity without any deterioration in spatial resolution. The capturing system based on the computer can set the capturing parameters, calibrate the spectrometer, process and display spectral imaging data. Laboratory calibrations are prerequisite for using precise spectral data. The spatial and spectral calibration minimize smile and keystone distortion caused by optical system, assembly and so on and fix positions of spatial and spectral line on the frame area-array CCD. Gases excitation lamp is used in smile calibration and the keystone calculation is carried out by different viewing field point source created by a series of narrow slit. The laboratory and field imaging results show that this pushbroom hyperspectral imaging system can acquire high quality spectral images.

  13. Cara Preservasi Fitoplasma dari Jaringan Kacang Tanah Bergejala Sapu untuk Deteksi DNA dengan Teknik PCR

    Directory of Open Access Journals (Sweden)

    Siska Irhamnawati Pulogu

    2017-07-01

    Full Text Available Witches‘ broom of peanut caused by phytoplasma is a common disease found in Indonesia. Phytoplasma is able to be detected using polymerase chain reaction (PCR technique. One of important factor which determine the successful of phytoplasma amplification is the DNA availability from fresh tissues. The research was aimed to evaluate some preservation methods of phytoplasma from infected plant samples. The aspects to be evaluated consisted of time (1, 2, 3, and 4 weeks, temperature (-20 °C, 4 °C, and 25 °C, and preservation medium (1X PGB buffer, 3 M NaCl, CTAB buffer, 70% ethanol, non medium, and FTA-card for storing the fresh phytoplasma infected samples. Good preservation method will optimize the phytoplasma DNA amplification using PCR standard technique followed by nested-PCR. The results showed that preservation of samples at -20 °C, 4 °C, and 25 °C in CTAB buffer was able to maintain the tissue freshness for 4 weeks and was able to provide the DNA of either quality or quantity sufficiently for PCR detection. PCR standard using a primer pair P1/P7 showed that not all of the preserved DNA of phytoplasma were amplified positively. However, standard PCR followed by nested-PCR using primer pair fU5/rU3 was able to increase the DNA detectability. Preserved samples derived from various medium and stored for 4 weeks gave positive results.  This results were in contrary with previous same samples which were detected negatively by standard PCR technique.

  14. [Meningococcal C conjugate vaccine: Impact of a vaccination program and long-term effectiveness in Navarra, Spain, 2000-2014].

    Science.gov (United States)

    Morales, Desirée; García-Cenoz, Manuel; Moreno, Laura; Bernaola, Enrique; Barricarte, Aurelio; Castilla, Jesús

    2016-12-01

    Since 2000, when the meningococcal serogroupC conjugate vaccine (MenCC) was introduced in the childhood immunization schedule in Spain, several changes in the schedule and catch-up campaigns have been performed. We aim to estimate the impact and effectiveness of this vaccine in Navarra up to 2014. The impact of the vaccination program was analysed by comparing incidence, mortality and lethality rates of disease before (1995-1999) and after (2004-2014) the introduction of the MenCC. Vaccine effectiveness was estimated using the screening method (Farrington) and the indirect cohort method (Broome). Data on cases were obtained from the active surveillance of meningococcal disease. During 1995-1999 the mean annual incidence of meningococcalC disease was 1.32 per 100,000, and 7.18 per 100,000 in children younger than 15years. The fall of meningococcalC disease incidence was significant in cohorts targeted for vaccination from the beginning and progressive in the general population. No cases were reported between 2011 and 2014. The estimated vaccine effectiveness was 96% by the screening method, and 99% by the indirect cohort method. The MenCC vaccination program has been successful in decreasing the incidence rate of serogroupC meningococcal disease in Navarra, and schedule changes have maintained high vaccine effectiveness throughout the study period. Copyright © 2015 Elsevier España, S.L.U. and Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica. All rights reserved.

  15. Behaviour change intervention to improve shared toilet maintenance and cleanliness in urban slums of Dhaka: a cluster-randomised controlled trial.

    Science.gov (United States)

    Alam, Mahbub-Ul; Winch, Peter J; Saxton, Ronald E; Nizame, Fosiul A; Yeasmin, Farzana; Norman, Guy; Masud, Abdullah-Al; Begum, Farzana; Rahman, Mahbubur; Hossain, Kamal; Layden, Anita; Unicomb, Leanne; Luby, Stephen P

    2017-08-01

    Shared toilets in urban slums are often unclean and poorly maintained, discouraging consistent use and thereby limiting impacts on health and quality of life. We developed behaviour change interventions to support shared toilet maintenance and improve user satisfaction. We report the intervention effectiveness on improving shared toilet cleanliness. We conducted a cluster-randomised controlled trial among users of 1226 shared toilets in 23 Dhaka slums. We assessed baseline toilet cleanliness in January 2015. The six-month intervention included provision of hardware (bin for solid waste, 4 l flushing bucket, 70 l water reservoir), and behaviour change communication (compound meetings, interpersonal household sessions, signs depicting rules for toilet use). We estimated the adjusted difference in difference (DID) to assess outcomes and accounted for clustering effects using generalised estimating equations. Compared to controls, intervention toilets were more likely to have water available inside toilet cubicles (DID: +4.7%, 95% CI: 0.2, 9.2), access to brush/broom for cleaning (DID: +8.4%, 95% CI: 2, 15) and waste bins (DID: +63%, 95% CI: 59, 66), while less likely to have visible faeces inside the pan (DID: -13%, 95% CI: -19, -5), the smell of faeces (DID: -7.6%, 95% CI: -14, -1.3) and household waste inside the cubicle (DID: -4%, 95% CI: -7, -1). In one of few efforts to promote shared toilet cleanliness, intervention compounds were significantly more likely to have cleaner toilets after six months. Future research might explore how residents can self-finance toilet maintenance, or employ mass media to reduce per-capita costs of behaviour change. © 2017 John Wiley & Sons Ltd.

  16. Underwater Hyperspectral Imaging (UHI) for Assessing the Coverage of Drill Cuttings on Benthic Habitats

    Science.gov (United States)

    Erdal, I.; Sandvik Aas, L. M.; Cochrane, S.; Ekehaug, S.; Hansen, I. M.

    2016-02-01

    Larger-scale mapping of seabed areas requires improved methods in order to obtain effective and sound marine management. The state of the art for visual surveys today involves video transects, which is a proven, yet time consuming and subjective method. Underwater hyperspectral imaging (UHI) utilizes high color sensitive information in the visible light reflected from objects on the seafloor to automatically identify seabed organisms and other objects of interest (OOI). A spectral library containing optical fingerprints of a range of OOI's are used in the classification. The UHI is a push-broom hyperspectral camera utilizing a state of the art CMOS sensor ensuring high sensitivity and low noise levels. Dedicated lamps illuminate the imaging area of the seafloor. Specialized software is used both for processing raw data and for geo-localization and OOI identification. The processed hyperspectral image are used as a reference when extracting new spectral data for OOI's to the spectral library. By using the spectral library in classification algorithms, large sea floor areas can automatically be classified. Recent advantages in UHI classification includes mapping of areas affected by drill cuttings. Tools for automated classification of seabed that have a different bottom composition than adjacent baseline areas are under development. Tests have been applied to a transect in gradient from the drilling hole to baseline seabed. Some areas along the transect were identified as different compared to baseline seabed. The finding was supported by results from traditional seabed mapping methods. We propose that this can be a useful tool for tomorrows environmental mapping and monitoring of drill sites.

  17. Evaluation of electron beam radiation effects in the incorporation of Piassava fibers (Attalea funifera Mart.) on ethylene vinyl alcohol copolymer (EVOH)

    International Nuclear Information System (INIS)

    Nogueira, Beatriz Ribeiro

    2012-01-01

    The aim of this work is to explore the contribution of ionizing radiation in the incorporation of piassava fibers (derived from wastes from broom factories) in the ethylene vinyl alcohol copolymer (EVOH), to obtain a composite material, E VOH-Piassava , for packaging applications. The interest in this fiber is due to its inherent properties and morphology as well as being biodegradable. The EVOH composite reinforced with 5% or 10%, by weight of piassava fiber powder with a particle size equal to or less than 125 μm, untreated or treated with 1% silane, were obtained by extrusion, using a twin screw extruder. For carrying out the tensile tests and oxygen barrier of the materials obtained, films were produced from composite materials and EVOH resin was obtained using the process of flat extrusion. Samples of EVOH and the composites were irradiated using an electron accelerator, at doses from 0 to 500 kGy. The results of SEM analysis and X-ray diffraction of composites suggest a good fiber-matrix adhesion, which can be also confirmed by its higher tensile strength at break, compared to that of neat EVOH. The results showed that the incorporation of piassava fibers can promote better oxygen barrier compared to the neat EVOH, in conditions of high humidity. It was observed that, after irradiation, the EVOH film showed better oxygen barrier in high humidity condition, when compared to the non-irradiated EVOH under the same condition, indicating radiation as an effective treatment to improve oxygen barrier in the studied conditions. (author)

  18. Apple proliferation phytoplasma influences the pattern of plant volatiles emitted depending on pathogen virulence

    Directory of Open Access Journals (Sweden)

    Margit eRid

    2016-01-01

    Full Text Available Apple proliferation (AP and pear decline (PD are the most severe diseases in pome fruit growing areas. AP-infected trees show typical symptoms such as witches’ broom, enlarged stipules, tasteless and dwarf fruits. PD-infected pears show a progressive weakening, reduced terminal growth, smaller fruits and die within weeks (quick decline or years (slow decline. The diseases are caused by the cell-wall lacking bacteria Candidatus Phytoplasma mali (AP phytoplasma and Ca. P. pyri (PD phytoplasma, respectively. In previous studies it has been shown that AP-infected apple trees emitted higher amounts of the sesquiterpene β-caryophyllene, an attractant of the insect vector Cacopsylla picta (Hemiptera: Psyllidae, thereby facilitating the dispersal of AP phytoplasma. In the present study, volatile organic compounds (VOCs occurring in the headspace of plants infected with Ca. P. mali strains causing different severity of symptoms in apple plants were collected, analyzed and identified. Headspace samples from healthy and AP-infected model plant tobacco (Nicotiana occidentalis and apple (Malus domestica as well as from healthy and PD-infected pear (Pyrus communis were investigated via thermodesorption and GC-MS analysis. Significantly higher concentrations of ethyl benzoate were produced in all phytoplasma-infected plants compared to healthy ones and an as yet unidentified sesquiterpene differed between the odor bouquets of healthy and by Ca. P. mali infected tobacco plants. Additionally, statistically significant higher amounts of both compounds were measured in the headspace of plants infected by the virulent AP strain. In apple, significantly higher concentrations of ethyl benzoate and methyl salicylate were observed for trees infected with strains of Ca. P. mali. Ethyl benzoate was also detected in the headspace of pear trees infected with Ca. P. pyri.

  19. Darwin’s legacy in South African evolutionary biology

    Directory of Open Access Journals (Sweden)

    S. D. Johnson

    2010-02-01

    Full Text Available In the two decades after publication of the Origin of Species, Charles Darwin facilitated the publication of numerous scientific papers by settler naturalists in South Africa. This helped to establish the strong tradition of natural history which has characterised evolutionary research in South African museums, herbaria and universities. Significant developments in the early 20th century included the hominid fossil discoveries of Raymond Dart, Robert Broom, and others, but there was otherwise very little South African involvement in the evolutionary synthesis of the 1930s and 1940s. Evolutionary biology developed into a distinct discipline in South Africa during the 1970s and 1980s when it was dominated by mammalian palaeontology and a vigorous debate around species concepts. In the post-apartheid era, the main focus of evolutionary biology has been the construction of phylogenies for African plants and animals using molecular data, and the use of these phylogenies to answer questions about taxonomic classification and trait evolution. South African biologists have also recently contributed important evidence for some of Darwin’s ideas about plant–animal coevolution, sexual selection, and the role of natural selection in speciation. A bibliographic analysis shows that South African authors produce 2–3% of the world’s publications in the field of evolutionary biology, which is much higher than the value of about 0.5% for publications in all sciences. With its extraordinary biodiversity and well-developed research infrastructure, South Africa is an ideal laboratory from which to advance evolutionary research.

  20. Observaciones sobre características, distribución y daños de sinfilidos (Symphyla y otros organismos del suelo en cultivos de piña, Ananas comosus, del Valle

    Directory of Open Access Journals (Sweden)

    Zuluaga C. José Iván

    1988-12-01

    Full Text Available Como en los últimos años los cultivos de piña, Ananas comosus, del Valle, han sido atacados por sinfílifos, clasificados por el Dr. Evert Lindquist como Scutigerella inmaculata, se estudiaron aspectos biológicos, distribución, daños y relaciones con algunos microorganismos. Mediante encuestas e inspecciones al suelo y plantas se verificó su presencia en Palmira, Pradera, Buga, Buga la grande, Sevilla, Dagua y Darién, principales zonas productoras de piña en este departamento. Ensayos en laboratorio demostraron Que S. inmaculata es de hábitos alimenticios saprófagos y/o fitófagos y de esta forma puede producir daños a las raíces de la pila, causando el síntoma de "escoba", enrojecimiento al follaje y debilidad en la planta; también se demostró que 3 sinfílidos/plante producen los síntomas del ataque. El sinfílido se presenta desde semillero, siendo los ataques tempranos los más graves, causando pérdidas en raíces del 66% aproximadamente.Pineapples culture Ananas comosus of Valle, they have been attacked by symphylids last vean (Symphyla, classified by Dr. Evert Lindquist like Scutigerella inmaculata. Biologie aspects, distribution, harms and relationships with some microorganisms some studied in this work. This has a wide distribution on Valle and through surveys and inspections over soil and plants their presance was verified in Palmira, Pradera, Buga; Bugalagrande, Sevilla, Dagua y Darién, the main producer pineapple zones in this department. Laboratory essays showed that this symphilids has saphrophytes and plant eater food habits and by this way could produce harm the pineapples roots causing symptom "broom", foliage getting red color and weakness in plant; also is shown that three symphylids per plant produce tipical symptom of attacking. It is made evident from seed bed being early attacks were more grave causing' root losses about 66% (percent aproximatilly.

  1. Paisaje y gestión de los recursos vegetales en el yacimiento romano de Gabia (Granada a través de la Arqueobotánica

    Directory of Open Access Journals (Sweden)

    Oliva Rodríguez-Ariza, M.ª

    2010-12-01

    Full Text Available Anthracological and carpological findings are presented for the Roman villa of Gabia, which gives us important knowledge concerning the exploitation of the environment and the diverse use of plant resources. The results confirm the existence of a strongly humanized landscape, with relatively open vegetation where shrubby and thicket species have great importance, with the Holm oak and the Aleppo pine being the representatives of the tree stratum. Crops would predominate the setting, where cereals, i.e. barley and glumeless wheat, occupying land reclaimed from the forest, while legumes such as chick-peas, lentils, grass peas, sweet peas, and fava beans were also cultivated. The fuel for fireplaces came from wood gathered from the forest as well as the remains from pruning cultivated trees. For the construction of posts and beams, large trees were used, these offering long, straight logs in the case of pines and elms, and branches of great strength such as walnut and Holm oak. For the construction of roofs, shrub species were used: common junipers, legumes, broom, and rosemary.Se presentan los resultados obtenidos por la antracología y la carpología en la villa romana de Gabia, que nos dan un importante conocimiento sobre la explotación del medio y del uso de los recursos vegetales utilizados con diversas finalidades. Estos resultados confirman la existencia de un paisaje fuertemente antropizado, con una vegetación relativamente abierta donde tienen una gran importancia las especies arbustivas y de matorral, quedando sólo la encina y el pino carrasco como representantes del estrato arbóreo. Los cultivos predominarían en el entorno, siendo los cereales, con el trigo desnudo y la cebada vestida, los que ocuparían parte de las tierras ganadas al bosque, desarrollándose también leguminosas como garbanzos, lentejas, guijas, guisantes y habas. El combustible para los hogares provenía tanto de leña recogida en el bosque, como de los deshechos

  2. The High Resolution Stereo Camera (HRSC) of Mars Express and its approach to science analysis and mapping for Mars and its satellites

    Science.gov (United States)

    Gwinner, K.; Jaumann, R.; Hauber, E.; Hoffmann, H.; Heipke, C.; Oberst, J.; Neukum, G.; Ansan, V.; Bostelmann, J.; Dumke, A.; Elgner, S.; Erkeling, G.; Fueten, F.; Hiesinger, H.; Hoekzema, N. M.; Kersten, E.; Loizeau, D.; Matz, K.-D.; McGuire, P. C.; Mertens, V.; Michael, G.; Pasewaldt, A.; Pinet, P.; Preusker, F.; Reiss, D.; Roatsch, T.; Schmidt, R.; Scholten, F.; Spiegel, M.; Stesky, R.; Tirsch, D.; van Gasselt, S.; Walter, S.; Wählisch, M.; Willner, K.

    2016-07-01

    The High Resolution Stereo Camera (HRSC) of ESA's Mars Express is designed to map and investigate the topography of Mars. The camera, in particular its Super Resolution Channel (SRC), also obtains images of Phobos and Deimos on a regular basis. As HRSC is a push broom scanning instrument with nine CCD line detectors mounted in parallel, its unique feature is the ability to obtain along-track stereo images and four colors during a single orbital pass. The sub-pixel accuracy of 3D points derived from stereo analysis allows producing DTMs with grid size of up to 50 m and height accuracy on the order of one image ground pixel and better, as well as corresponding orthoimages. Such data products have been produced systematically for approximately 40% of the surface of Mars so far, while global shape models and a near-global orthoimage mosaic could be produced for Phobos. HRSC is also unique because it bridges between laser altimetry and topography data derived from other stereo imaging instruments, and provides geodetic reference data and geological context to a variety of non-stereo datasets. This paper, in addition to an overview of the status and evolution of the experiment, provides a review of relevant methods applied for 3D reconstruction and mapping, and respective achievements. We will also review the methodology of specific approaches to science analysis based on joint analysis of DTM and orthoimage information, or benefitting from high accuracy of co-registration between multiple datasets, such as studies using multi-temporal or multi-angular observations, from the fields of geomorphology, structural geology, compositional mapping, and atmospheric science. Related exemplary results from analysis of HRSC data will be discussed. After 10 years of operation, HRSC covered about 70% of the surface by panchromatic images at 10-20 m/pixel, and about 97% at better than 100 m/pixel. As the areas with contiguous coverage by stereo data are increasingly abundant, we also

  3. JEOS. The JANUS earth observation satellite

    Science.gov (United States)

    Molette, P.; Jouan, J.

    The JANUS multimission platform has been designed to minimize the cost of the satellite (by a maximum reuse of equipment from other proprogrammes) and of its associated launch by Aŕiane (by a piggy-back configuration optimized for Ariane 4). The paper describes the application of the JANUS platform to an Earth observation mission with the objective to provide a given country with a permanent monitoring of its earth resources by exploitation of spaceborne imagery. According to this objective, and to minimize the overall system and operational cost, the JANUS Earth Observation Satellite (JEOS) will provide a limited coverage with real time transmission of image data, thus avoiding need for on-board storage and simplifying operations. The JEOS operates on a low earth, near polar sun synchronous orbit. Launched in a piggy-back configuration on Ariane 4, with a SPOT or ERS spacecraft, it reaches its operational orbit after a drift orbit of a few weeks maximum. In its operational mode, the JEOS is 3-axis stabilised, earth pointed. After presentation of the platform, the paper describes the solid state push-broom camera which is composed of four optical lenses mounted on a highly stable optical bench. Each lens includes an optics system, reused from an on-going development, and two CCD linear arrays of detectors. The camera provides four registered channels in visible and near IR bands. The whole optical bench is supported by a rotating mechanism which allows rotation of the optical axis in the across-track direction. The JEOS typical performance for a 700 km altitude is then summarized: spatial resolution 30 m, swath width 120 km, off-track capability 325 km,… The payload data handling and transmission electronics, derived from the French SPOT satellite, realizes the processing, formatting, and transmission to the ground; this allows reuse of the standard SPOT receiving stations. The camera is only operated when the spacecraft is within the visibility of the ground

  4. RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences.

    Science.gov (United States)

    Sperber, Göran; Lövgren, Anders; Eriksson, Nils-Einar; Benachenhou, Farid; Blomberg, Jonas

    2009-06-16

    The rapid accumulation of genomic information in databases necessitates rapid and specific algorithms for extracting biologically meaningful information. More or less complete retroviral sequences, also called proviral or endogenous retroviral sequences; ERVs, constitutes at least 5% of vertebrate genomes. After infecting the host, these retroviruses have integrated in germ line cells, and have then been carried in genomes for at least several 100 million years. A better understanding of structure and function of these sequences can have profound biological and medical consequences. RetroTector (ReTe) is a platform-independent Java program for identification and characterization of proviral sequences in vertebrate genomes. The full ReTe requires a local installation with a MySQL database. Although not overly complicated, the installation may take some time. A "light" version of ReTe, (RetroTector online; ROL) which does not require specific installation procedures is provided, via the World Wide Web. ROL http://www.fysiologi.neuro.uu.se/jbgs/ was implemented under the Batchelor web interface (A Lövgren et al). It allows both GenBank accession number, file and FASTA cut-and-paste admission of sequences (5 to 10,000 kilobases). Up to ten submissions can be done simultaneously, allowing batch analysis of brooms", which increase specificity. Proviral sequences can be hard to recognize

  5. The mitochondrial genome of Moniliophthora roreri, the frosty pod rot pathogen of cacao.

    Science.gov (United States)

    Costa, Gustavo G L; Cabrera, Odalys G; Tiburcio, Ricardo A; Medrano, Francisco J; Carazzolle, Marcelo F; Thomazella, Daniela P T; Schuster, Stephen C; Carlson, John E; Guiltinan, Mark J; Bailey, Bryan A; Mieczkowski, Piotr; Pereira, Gonçalo A G; Meinhardt, Lyndel W

    2012-05-01

    In this study, we report the sequence of the mitochondrial (mt) genome of the Basidiomycete fungus Moniliophthora roreri, which is the etiologic agent of frosty pod rot of cacao (Theobroma cacao L.). We also compare it to the mtDNA from the closely-related species Moniliophthora perniciosa, which causes witches' broom disease of cacao. The 94 Kb mtDNA genome of M. roreri has a circular topology and codes for the typical 14 mt genes involved in oxidative phosphorylation. It also codes for both rRNA genes, a ribosomal protein subunit, 13 intronic open reading frames (ORFs), and a full complement of 27 tRNA genes. The conserved genes of M. roreri mtDNA are completely syntenic with homologous genes of the 109 Kb mtDNA of M. perniciosa. As in M. perniciosa, M. roreri mtDNA contains a high number of hypothetical ORFs (28), a remarkable feature that make Moniliophthoras the largest reservoir of hypothetical ORFs among sequenced fungal mtDNA. Additionally, the mt genome of M. roreri has three free invertron-like linear mt plasmids, one of which is very similar to that previously described as integrated into the main M. perniciosa mtDNA molecule. Moniliophthora roreri mtDNA also has a region of suspected plasmid origin containing 15 hypothetical ORFs distributed in both strands. One of these ORFs is similar to an ORF in the mtDNA gene encoding DNA polymerase in Pleurotus ostreatus. The comparison to M. perniciosa showed that the 15 Kb difference in mtDNA sizes is mainly attributed to a lower abundance of repetitive regions in M. roreri (5.8 Kb vs 20.7 Kb). The most notable differences between M. roreri and M. perniciosa mtDNA are attributed to repeats and regions of plasmid origin. These elements might have contributed to the rapid evolution of mtDNA. Since M. roreri is the second species of the genus Moniliophthora whose mtDNA genome has been sequenced, the data presented here contribute valuable information for understanding the evolution of fungal mt genomes among

  6. Towards an integrated approach to health and medicine in Africa

    Directory of Open Access Journals (Sweden)

    Kezia Batisai

    2016-01-01

    Full Text Available This article frames the intersections of medicine and humanities as intrinsic to understanding the practice of health care in Africa. Central to this manuscript, which draws on empirical findings on the interplay between HIV and AIDS and alternative medicine in Zimbabwe is the realisation that very limited research has been undertaken to examine ‘HIV/AIDS patient behaviour’ with respect to choice of therapy on the continent [Bene, M. & Darkoh, M. B. K. (2014. The Constraints of Antiretroviral Uptake in Rural Areas: The Case of Thamaga and Surrounding Villages, Botswana. SAHARA-J: Journal of Social Aspects of HIV/AIDS, 11(1, 167–177. doi:10.1080/17290376.2014.972057; Chavunduka, G. (1998. Professionalisation of Traditional Medicine in Zimbabwe, Harare, Jongwe Printers; O’Brien, S. & Broom, A. (2014. HIV in (and out of the Clinic: Biomedicine, Traditional Medicine and Spiritual Healing in Harare. SAHARA-J: Journal of Social Aspects of HIV/AIDS, 11(1, 94–104. doi:10.1080/17290376.2014.938102]. As such, a social approach to health-seeking behaviour questions how decisions about alternative therapies including herbal remedies, traditional healing and faith healing are made. The paper unpacks the realities around how people living with HIV and AIDS – who span different age groups and profess various religious backgrounds, faced with an insurmountable health challenge against a background of limited resources and no cure for the virus – often experience shifts in health-seeking behaviour. Grappling with seemingly simple questions about ‘when, where and how to seek medical attention’, the paper provides pointers to therapy choices and health-seeking behaviour; and it serves as a route into deeper and intense healthcare practice explorations. In conclusion, the paper proposes that medicine and the humanities should engage seriously with those social aspects of HIV and AIDS which call for an integrated approach to healthcare practice in

  7. Evaluation of Forest Health Conditions using Unmanned Aircraft Systems (UAS)

    Science.gov (United States)

    Hatfield, M. C.; Heutte, T. M.

    2016-12-01

    US Forest Service Alaska Region Forest Health Protection (FHP) and University of Alaska Fairbanks, Alaska Center for Unmanned Aircraft Systems Integration (ACUASI) are evaluating capability of Unmanned Aerial Systems (UAS) to monitor forest health conditions in Alaska's Interior Region. In July 2016, the team deployed UAS at locations in the Tanana Valley near Fairbanks in order to familiarize FHP staff with capabilities of UAS for evaluating insect and disease damage. While many potential uses of UAS to evaluate and monitor forest health can be envisioned, this project focused on use of a small UAS for rapid assessment of insect and disease damage. Traditional ground-based methods are limited by distance from ground to canopy and inaccessibility of forest stands due to terrain conditions. Observation from fixed-wing aircraft provide a broad overview of conditions but are limited by minimum safe flying altitude (500' AGL) and aircraft speed ( 100 mph). UAS may provide a crucial bridge to fill in gaps between ground and airborne methods, and offer significant cost savings and greater flexibility over helicopter-based observations. Previous uses of UAS for forest health monitoring are limited - this project focuses on optimizing choice of vehicle, sensors, resolution and area scanned from different altitudes, and use of visual spectrum vs NIR image collection. The vehicle selected was the ACUASI Ptarmigan, a small hexacopter (based on DJI S800 airframe and 3DR autopilot) capable of carrying a 1.5 kg payload for 15 min for close-range environmental monitoring missions. Sites were chosen for conditions favorable to UAS operation and presence of forest insect and disease agents including spruce broom rust, aspen leaf miner, birch leaf roller, and willow leafblotch miner. A total of 29 flights were conducted with 9000+ images collected. Mission variables included camera height, UAS speed, and medium- (Sony NEX-7) vs low-resolution (GoPro Hero) cameras. Invaluable

  8. Randomized comparison of vaginal self-sampling by standard vs. dry swabs for Human papillomavirus testing

    International Nuclear Information System (INIS)

    Eperon, Isabelle; Vassilakos, Pierre; Navarria, Isabelle; Menoud, Pierre-Alain; Gauthier, Aude; Pache, Jean-Claude; Boulvain, Michel; Untiet, Sarah; Petignat, Patrick

    2013-01-01

    To evaluate if human papillomavirus (HPV) self-sampling (Self-HPV) using a dry vaginal swab is a valid alternative for HPV testing. Women attending colposcopy clinic were recruited to collect two consecutive Self-HPV samples: a Self-HPV using a dry swab (S-DRY) and a Self-HPV using a standard wet transport medium (S-WET). These samples were analyzed for HPV using real time PCR (Roche Cobas). Participants were randomized to determine the order of the tests. Questionnaires assessing preferences and acceptability for both tests were conducted. Subsequently, women were invited for colposcopic examination; a physician collected a cervical sample (physician-sampling) with a broom-type device and placed it into a liquid-based cytology medium. Specimens were then processed for the production of cytology slides and a Hybrid Capture HPV DNA test (Qiagen) was performed from the residual liquid. Biopsies were performed if indicated. Unweighted kappa statistics (κ) and McNemar tests were used to measure the agreement among the sampling methods. A total of 120 women were randomized. Overall HPV prevalence was 68.7% (95% Confidence Interval (CI) 59.3–77.2) by S-WET, 54.4% (95% CI 44.8–63.9) by S-DRY and 53.8% (95% CI 43.8–63.7) by HC. Among paired samples (S-WET and S-DRY), the overall agreement was good (85.7%; 95% CI 77.8–91.6) and the κ was substantial (0.70; 95% CI 0.57-0.70). The proportion of positive type-specific HPV agreement was also good (77.3%; 95% CI 68.2-84.9). No differences in sensitivity for cervical intraepithelial neoplasia grade one (CIN1) or worse between the two Self-HPV tests were observed. Women reported the two Self-HPV tests as highly acceptable. Self-HPV using dry swab transfer does not appear to compromise specimen integrity. Further study in a large screening population is needed. ClinicalTrials.gov: http://clinicaltrials.gov/show/NCT01316120

  9. The Impact of Different Support Vectors on GOSAT-2 CAI-2 L2 Cloud Discrimination

    Directory of Open Access Journals (Sweden)

    Yu Oishi

    2017-11-01

    Full Text Available Greenhouse gases Observing SATellite-2 (GOSAT-2 will be launched in fiscal year 2018. GOSAT-2 will be equipped with two sensors: the Thermal and Near-infrared Sensor for Carbon Observation (TANSO-Fourier Transform Spectrometer 2 (FTS-2 and the TANSO-Cloud and Aerosol Imager 2 (CAI-2. CAI-2 is a push-broom imaging sensor that has forward- and backward-looking bands to observe the optical properties of aerosols and clouds and to monitor the status of urban air pollution and transboundary air pollution over oceans, such as PM2.5 (particles less than 2.5 micrometers in diameter. CAI-2 has important applications for cloud discrimination in each direction. The Cloud and Aerosol Unbiased Decision Intellectual Algorithm (CLAUDIA1, which applies sequential threshold tests to features is used for GOSAT CAI L2 cloud flag processing. If CLAUDIA1 is used with CAI-2, it is necessary to optimize the thresholds in accordance with CAI-2. However, CLAUDIA3 with support vector machines (SVM, a supervised pattern recognition method, was developed, and then we applied CLAUDIA3 for GOSAT-2 CAI-2 L2 cloud discrimination processing. Thus, CLAUDIA3 can automatically find the optimized boundary between clear and cloudy areas. Improvements in CLAUDIA3 using CAI (CLAUDIA3-CAI continue to be made. In this study, we examined the impact of various support vectors (SV on GOSAT-2 CAI-2 L2 cloud discrimination by analyzing (1 the impact of the choice of different time periods for the training data and (2 the impact of different generation procedures for SV on the cloud discrimination efficiency. To generate SV for CLAUDIA3-CAI from MODIS data, there are two times at which features are extracted, corresponding to CAI bands. One procedure is equivalent to generating SV using CAI data. Another procedure generates SV for MODIS cloud discrimination at the beginning, and then extracts decision function, thresholds, and SV corresponding to CAI bands. Our results indicated the following

  10. Aula adaptada de stand up paddle com garrafas pet nas aulas de educação física - Lecture adapted from stand up paddle with pet bottles in physical education classes

    Directory of Open Access Journals (Sweden)

    Thiago Zagare

    2015-10-01

    Full Text Available Resumo Pelo presente trabalho procura-se mostrar como é possível adaptar as aulas de Educação Física aos esportes de aventura, no caso o stand up paddle. As aulas de educação física vêm se transformando aos poucos, pois os professores estão procurando se especializar e transformar suas aulas em algo mais atrativo e interessante a seus alunos, propondo novos conhecimentos. A prática do SUP é feita em um meio aquático, com uma prancha, um remo e um colete flutuante. O professor de educação física poderá levar esse esporte para seus alunos com algumas adaptações de todos os equipamentos, como a prancha de garrafa pet, o remo de cabo de vassoura ou varão de cortina com uma bolinha de tênis na ponta, que facilita o ensino do SUP. Sua prática também traz uma conscientização sobre o meio ambiente, que hoje está sendo cada vez mais destruído e poluído por dejetos que podem ser reaproveitados e reciclados, como as garrafas pet, que nesse trabalho foram transformadas em pranchas de stand up para as aulas de educação física na escola. Palavras- chave: educação física, esporte de aventura, stand up paddle, ensino. LECTURE ADAPTED FROM STAND UP PADDLE WITH PET BOTTLES IN PHYSICAL EDUCATION CLASSES Abstract By this study we aimed to show how you can adapt the physical education classes to adventure sports, in case the stand up paddle. The physical education classes are turning slowly, because teachers are looking to specialize and transform their classes into something more attractive and interesting to their students, proposing new knowledge. The practice of SUP is done in a water environment, with a board, a paddle and a floating vest. The physical education teacher may take the sport to his students with some adaptations of all equipment, such as plastic bottle plank, the broom handle paddle or curtain rod with a tennis ball on the end, which facilitates the teaching of SUP. His practice also brings an awareness of the

  11. A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.

    Science.gov (United States)

    Saski, Christopher A; Feltus, Frank A; Staton, Margaret E; Blackmon, Barbara P; Ficklin, Stephen P; Kuhn, David N; Schnell, Raymond J; Shapiro, Howard; Motamayor, Juan Carlos

    2011-08-16

    The fermented dried seeds of Theobroma cacao (cacao tree) are the main ingredient in chocolate. World cocoa production was estimated to be 3 million tons in 2010 with an annual estimated average growth rate of 2.2%. The cacao bean production industry is currently under threat from a rise in fungal diseases including black pod, frosty pod, and witches' broom. In order to address these issues, genome-sequencing efforts have been initiated recently to facilitate identification of genetic markers and genes that could be utilized to accelerate the release of robust T. cacao cultivars. However, problems inherent with assembly and resolution of distal regions of complex eukaryotic genomes, such as gaps, chimeric joins, and unresolvable repeat-induced compressions, have been unavoidably encountered with the sequencing strategies selected. Here, we describe the construction of a BAC-based integrated genetic-physical map of the T. cacao cultivar Matina 1-6 which is designed to augment and enhance these sequencing efforts. Three BAC libraries, each comprised of 10× coverage, were constructed and fingerprinted. 230 genetic markers from a high-resolution genetic recombination map and 96 Arabidopsis-derived conserved ortholog set (COS) II markers were anchored using pooled overgo hybridization. A dense tile path consisting of 29,383 BACs was selected and end-sequenced. The physical map consists of 154 contigs and 4,268 singletons. Forty-nine contigs are genetically anchored and ordered to chromosomes for a total span of 307.2 Mbp. The unanchored contigs (105) span 67.4 Mbp and therefore the estimated genome size of T. cacao is 374.6 Mbp. A comparative analysis with A. thaliana, V. vinifera, and P. trichocarpa suggests that comparisons of the genome assemblies of these distantly related species could provide insights into genome structure, evolutionary history, conservation of functional sites, and improvements in physical map assembly. A comparison between the two T. cacao

  12. Field Imaging Spectroscopy. Applications in Earthquake Geology

    Science.gov (United States)

    Ragona, D.; Minster, B.; Rockwell, T. K.; Fialko, Y.; Jussila, J.; Blom, R.

    2005-12-01

    Field Imaging Spectroscopy in the visible and infrared sections of the spectrum can be used as a technique to assist paleoseismological studies. Submeter range hyperspectral images of paleoseismic excavations can assist the analyisis and interpretation of the earthquake history of a site. They also provide an excellent platform for storage of the stratigraphic and structural information collected from such a site. At the present, most field data are collected descriptively. This greatly enhances the range of information that can be recorded in the field. The descriptions are documented on hand drawn field logs and/or photomosaics constructed from individual photographs. Recently developed portable hyperspectral sensors acquire high-quality spectroscopic information at high spatial resolution (pixel size ~ 0.5 mm at 50 cm) over frequencies ranging from the visible band to short wave infrared. The new data collection and interpretation methodology that we are developing (Field Imaging Spectroscopy) makes available, for the first time, a tool to quantitatively analyze paleoseismic and stratigraphic information. The reflectance spectra of each sub-millimeter portion of the material are stored in a 3-D matrix (hyperspectral cube) that can be analyzed by visual inspection, or by using a large variety of algorithms. The reflectance spectrum is related to the chemical composition and physical properties of the surface therefore hyperspectral images are capable of revealing subtle changes in texture, composition and weathering. For paleoseismic studies, we are primarily interested in distinguishing changes between layers at a given site (spectral stratigraphy) rather than the precise composition of the layers, although this is an added benefit. We have experimented with push-broom (panoramic) portable scanners, and acquired data form portions of fault exposures and cores. These images were processed using well-known imaging processing algorithms, and the results have being

  13. Comparative feasibility of gamma, electron beam and x-rays facilities at the Kuala Lumpur International airport (KLIA), Sepang, Malaysia

    International Nuclear Information System (INIS)

    Muhamad Lebai Juri; Sidek Othman; Wan Mashol Wan Zain; Ridzuan Ismail

    1997-01-01

    Malaysia is one of the world's leading producers of rubber, palm oil and cocoa beans. There is a great concern within the commodity industries of the possible outbreak of plant diseases yet to be detected in the country but endemic in the South American tropics and Africa. The risk of transferring the diseases to Malaysia are high because of increasing contacts between Malaysia and the South American countries and Africa through trades, tourism and the South-South cooperation. Diseases of particular importance are the South American leaf blight (SALB) of rubber, vascular wilts of oil palm and witches'broom of cocoa caused by Microcyclus ulei, Fusarium oxysporum f sp. elaeidies and Crinipellis pemiciosa (Stahel) Singer respectively. Recent estimates by the Agriculture Department of Malaysia indicated in the event of large scale attack by SALB on rubber would result in revenue loss of a staggering RM 3-3.5 billion per annum, an equivalent of 70% loss in rubber acreage. This excludes massive unemployment in the rubber industry and cost of cleaning up activities to eradicate and free plantations of SALB. Recurring attacks of the diseases cannot be discounted given the fact that spores of fungi can remain dormant for years but still viable. Stringent control and quarantine steps are presently being exercised by the authorities to intercept at airports and hence prevent entry of infectious plant diseases in Malaysia. Many of the measures using chemicals, ultra violet light (UV), steam sterilization, air blowers etc. are not sufficiently effective in killing fungi especially when spores are carried in the personal belongings of air-passengers. There was suggestion that ionizing radiation offers alternative to the present methods for intercepting pathogens at the port of entry. This paper will firstly, discuss results on the investigations carried out to compare the effectiveness of various ionizing radiation sources, i.e., gamma, electron beam and x-rays; chemicals and UV

  14. Uses and management of Aphandra Natalia (palmae in Ecuador

    Directory of Open Access Journals (Sweden)

    1992-01-01

    Full Text Available UTILISATIONS ET MISE EN VALEUR DE APHANDRA NATALIA (PALMAE EN EQUATEUR. Aphandra natalia (Balslev & Henderson Barfod est un palmier Phytelephantoidé de l’Amazonie occidentale. En Équateur il est exploité commercialement pour ses fruits comestibles, et pour les fibres de la gousse et du pétiole de la feuille dont on se sert pour fabriquer les balais dans tout le pays. Les fibres sont extraites principalement des individus sauvages de la forêt ou de ceux qui se trouvent dans les pâturages et les zones agricoles et qui sont exploités in situ. L’exploitation comprend la protection du palmier lorsque la forêt est coupée, l’enlèvement sélectif d’autre végétation et des techniques de récolte non-destructives. De temps à autre A. natalia se cultive. USOS Y MANEJO DE APHANDRA NATALIA (PALMAE EN ECUADOR. Aphandra natalia (Balslev & Henderson Barfod es una palma Phytelephantoideae de la Amazonia occidental. En el Ecuador es explotada comercialmente por sus frutos comestibles, y por las fibras de la vaina y del pecíolo de la hoja que son usadas para la producción de escobas en todo el país. Las fibras son extraídas principalmente de individuos en el bosque natural o de plantas dejadas en los pastizales y en los campos agrícolas, y manejadas in situ. El manejo incluye dejar en pie la palma cuando el bosque es talado, la remoción selectiva de otra vegetación y las técnicas de cosecha no destructivas. Ocasionalmente A. natalia es cultivada. Aphandra natalia (Balslev & Henderson Barfod is a Phytelephantoid palm from the western Amazon. In Ecuador it is commercially exploited for its edible fruits, and for its leaf sheath and petiole fibers which are used for brooms throughout the country. Fibers are extracted mainly from wild individuals in the forest or those left in pastures and agricultural areas and managed in situ. Management includes protecting the palm when forest is cleared, selective removal of other vegetation, and non

  15. Reversing land degradation through grasses: a systematic meta-analysis in the Indian tropics

    Science.gov (United States)

    Mandal, Debashis; Srivastava, Pankaj; Giri, Nishita; Kaushal, Rajesh; Cerda, Artemi; Meherul Alam, Nurnabi

    2017-02-01

    Although intensive agriculture is necessary to sustain the world's growing population, accelerated soil erosion contributes to a decrease in the environmental health of ecosystems at local, regional and global scales. Reversing the process of land degradation using vegetative measures is of utmost importance in such ecosystems. The present study critically analyzes the effect of grasses in reversing the process of land degradation using a systematic review. The collected information was segregated under three different land use and land management situations. Meta-analysis was applied to test the hypothesis that the use of grasses reduces runoff and soil erosion. The effect of grasses was deduced for grass strip and in combination with physical structures. Similarly, the effects of grasses were analyzed in degraded pasture lands. The overall result of the meta-analysis showed that infiltration capacity increased approximately 2-fold after planting grasses across the slopes in agricultural fields. Grazing land management through a cut-and-carry system increased conservation efficiencies by 42 and 63 % with respect to reduction in runoff and erosion, respectively. Considering the comprehensive performance index (CPI), it has been observed that hybrid Napier (Pennisetum purpureum) and sambuta (Saccharum munja) grass seem to posses the most desirable attributes as an effective grass barrier for the western Himalayas and Eastern Ghats, while natural grass (Dichanthium annulatum) and broom grass (Thysanolaena maxima) are found to be most promising grass species for the Konkan region of the Western Ghats and the northeastern Himalayan region, respectively. In addition to these benefits, it was also observed that soil carbon loss can be reduced by 83 % with the use of grasses. Overall, efficacy for erosion control of various grasses was more than 60 %; hence, their selection should be based on the production potential of these grasses under given edaphic and agro

  16. Precision 3d Surface Reconstruction from Lro Nac Images Using Semi-Global Matching with Coupled Epipolar Rectification

    Science.gov (United States)

    Hu, H.; Wu, B.

    2017-07-01

    The Narrow-Angle Camera (NAC) on board the Lunar Reconnaissance Orbiter (LRO) comprises of a pair of closely attached high-resolution push-broom sensors, in order to improve the swath coverage. However, the two image sensors do not share the same lenses and cannot be modelled geometrically using a single physical model. Thus, previous works on dense matching of stereo pairs of NAC images would generally create two to four stereo models, each with an irregular and overlapping region of varying size. Semi-Global Matching (SGM) is a well-known dense matching method and has been widely used for image-based 3D surface reconstruction. SGM is a global matching algorithm relying on global inference in a larger context rather than individual pixels to establish stable correspondences. The stereo configuration of LRO NAC images causes severe problem for image matching methods such as SGM, which emphasizes global matching strategy. Aiming at using SGM for image matching of LRO NAC stereo pairs for precision 3D surface reconstruction, this paper presents a coupled epipolar rectification methods for LRO NAC stereo images, which merges the image pair in the disparity space and in this way, only one stereo model will be estimated. For a stereo pair (four) of NAC images, the method starts with the boresight calibration by finding correspondence in the small overlapping stripe between each pair of NAC images and bundle adjustment of the stereo pair, in order to clean the vertical disparities. Then, the dominate direction of the images are estimated by project the center of the coverage area to the reference image and back-projected to the bounding box plane determined by the image orientation parameters iteratively. The dominate direction will determine an affine model, by which the pair of NAC images are warped onto the object space with a given ground resolution and in the meantime, a mask is produced indicating the owner of each pixel. SGM is then used to generate a disparity

  17. PRECISION 3D SURFACE RECONSTRUCTION FROM LRO NAC IMAGES USING SEMI-GLOBAL MATCHING WITH COUPLED EPIPOLAR RECTIFICATION

    Directory of Open Access Journals (Sweden)

    H. Hu

    2017-07-01

    Full Text Available The Narrow-Angle Camera (NAC on board the Lunar Reconnaissance Orbiter (LRO comprises of a pair of closely attached high-resolution push-broom sensors, in order to improve the swath coverage. However, the two image sensors do not share the same lenses and cannot be modelled geometrically using a single physical model. Thus, previous works on dense matching of stereo pairs of NAC images would generally create two to four stereo models, each with an irregular and overlapping region of varying size. Semi-Global Matching (SGM is a well-known dense matching method and has been widely used for image-based 3D surface reconstruction. SGM is a global matching algorithm relying on global inference in a larger context rather than individual pixels to establish stable correspondences. The stereo configuration of LRO NAC images causes severe problem for image matching methods such as SGM, which emphasizes global matching strategy. Aiming at using SGM for image matching of LRO NAC stereo pairs for precision 3D surface reconstruction, this paper presents a coupled epipolar rectification methods for LRO NAC stereo images, which merges the image pair in the disparity space and in this way, only one stereo model will be estimated. For a stereo pair (four of NAC images, the method starts with the boresight calibration by finding correspondence in the small overlapping stripe between each pair of NAC images and bundle adjustment of the stereo pair, in order to clean the vertical disparities. Then, the dominate direction of the images are estimated by project the center of the coverage area to the reference image and back-projected to the bounding box plane determined by the image orientation parameters iteratively. The dominate direction will determine an affine model, by which the pair of NAC images are warped onto the object space with a given ground resolution and in the meantime, a mask is produced indicating the owner of each pixel. SGM is then used to

  18. Plankton community structure and connectivity in the Kimberley-Browse region of NW Australia

    Science.gov (United States)

    McKinnon, A. D.; Duggan, S.; Holliday, D.; Brinkman, R.

    2015-02-01

    We describe the zooplankton and ichthyoplankton communities of coastal waters of the Kimberley coast (North West Australia), sampled in macrotidal Camden Sound during both the wet and dry seasons of 2011, and compare these to six other Kimberley embayments during the wet season of 2013. Zooplankton abundance in Camden Sound was 7038 ± 3913 SD ind. m-3 in the wet season and 1892 ± 708 SD ind. m-3 in the dry season, with copepods accounting for 85% by number. In all, 78 species of copepods were recorded, with the families Paracalanidae and Oithonidae dominant. In Camden Sound, 48 families of larval fish occurred, with ichthyoplankton more abundant in the wet season than the dry season (1.16 ± 0.2 ind. m-3 cf 0.76 ± 0.2 ind. m-3). Larval gobiids (Subfamily Gobiinae) were most abundant, with other common families associated with either pelagic or soft-bottom habitats as adults. Multivariate analyses of both copepod and ichthyoplankton communities demonstrated strong seasonal contrasts, although an along-shelf gradient in copepod community composition was apparent along the embayments sampled in 2013. There was little spatial variation in plankton communities within Camden Sound as a result of the large tidal range (up to 11.7 m, with 2.5 m-1 velocities), although gradients in abundance and composition on cross-shelf transects occurred in the more northern embayments that had a lower tidal range, such as Napier Broome Bay. Copepod communities of the Kimberley-Browse region were placed in regional perspective by multivariate analyses of similar data collected in the eastern Indian Ocean at Scott Reef, in the Arafura Sea and on the southern North West (NW) shelf. The plankton communities of the NW shelf form a series of along-shore metacommunities linked by advection, with weaker cross-shelf connectivity. The presence of the larvae of mesopelagic fishes of the family Myctophidae in coastal waters confirms seasonal cross-shelf connectivity.

  19. Searching Sinks and Sources: CO2 Fluxes Before and After Partial Deforestation of a Spruce Forest

    Science.gov (United States)

    Ney, P.; Graf, A.; Druee, C.; Esser, O.; Klosterhalfen, A.; Valler, V.; Pick, K.; Vereecken, H.

    2017-12-01

    Forest ecosystems in the northern mid-latitudes act as a sink for atmospheric carbon dioxide (CO2) and hence play an important role in the terrestrial carbon cycle. Disturbances of these landscapes may have a significant impact on their ecosystem carbon budget. We present seven years of eddy covariance (EC) measurements (September 2013 to September 2017) over a 70 year old spruce stock, including three years prior to and four years after partial deforestation. We analyzed the seasonal and inter-annual changes of carbon fluxes as affected mainly by the forest transition. The measurements were carried out in a small headwater catchment (38.5 ha) within the TERENO (TERrestrial Environmental Observatories) network in the Eifel National Park Germany (50°30'N, 06°19'E, 595-629 m a.s.l.). An EC system, mounted on the top of a 38 m high tower, continuously samples fluxes of momentum, sensible heat, latent heat and CO2. In August and September 2013, more than 20% of the catchment was deforested and planned for regeneration towards natural deciduous vegetation, and a second EC station (2.5 m height) was installed in the middle of this clearcut. Flux partitioning and gap filling methods were used to calculate full time series and annual carbon budgets of the measured net ecosystem exchange (NEE) and its components gross primary production (GPP) and total ecosystem respiration (Reco). Additionally, soil respiration was measured with manual chambers on a monthly to bi-monthly basis at 25 transect points in the forest and deforested area. Annual sums of NEE represent the forest as a carbon sink with small inter-annual variability. In contrast, the deforested area showed a clear trend. In the first year after partial deforestation, regrowth on the deforested area consisted mainly of grasses and red foxglove (Digitalis purpurea L.), while since the second year also growth of mountain ash (Sorbus aucuparia L.) and broom (Cytisus scoparius L.) increased. The regrowth of biomass is

  20. Leukaemia incidence among workers in the shoe and boot manufacturing industry: a case-control study

    Directory of Open Access Journals (Sweden)

    Forand Steven P

    2004-08-01

    Full Text Available Abstract Background Previous reports have indicated an excess of leukaemia in Broome County, New York, particularly in the Town of Union. Surveillance of cancer incidence data indicates that a large proportion of these cases occurred among males ages 65 and older. Shoe and boot manufacturing has been the largest single industry in this area throughout much of the past century. Occupational studies from Europe suggest a link between leukaemia and employment in the shoe and boot manufacturing industry. However, researchers have not found a positive association between leukaemia and employment in the shoe industry among workers in the United States. Methods A matched case-control study was conducted to investigate the association between leukaemia incidence among males 65 and older and employment in the shoe and boot manufacturing industry. Thirty-six cases of leukaemia occurring between 1981–1990; among males age 65 and older; residing in the town of Union met the study case criteria. Death certificates were obtained for each of the cases. These were matched to death certificates of 144 controls on date of death and date of birth +/- 1 year. Death certificates were then examined to determine the employer and occupation of each study subject. Conditional logistic regression was used to determine the risk of leukaemia among those working in the industry. Results The risk of both leukaemia (OR = 1.47; 95% CI 0.70, 3.09 and acute myeloid leukaemia (OR = 1.19; 95% CI 0.33, 4.28 were elevated among those employed in the shoe and boot manufacturing industry, however neither was statistically significant. Conclusion The results, though suggestive of an association between leukaemia and employment in the shoe and boot manufacturing industry, were not statistically conclusive due mainly to limited study power. Several additional limitations may also have prevented the observance of more conclusive findings. Better exposure assessment, information on

  1. Weight loss for women with and without polycystic ovary syndrome following a very low-calorie diet in a community-based setting with trained facilitators for 12 weeks

    Directory of Open Access Journals (Sweden)

    Nikokavoura EA

    2015-10-01

    Full Text Available Efsevia A Nikokavoura,1 Kelly L Johnston,2 John Broom,1 Wendy L Wrieden,1 Catherine Rolland1 1Centre for Obesity Research and Epidemiology, Institute for Health & Wellbeing Research (IHWR, Robert Gordon University, Aberdeen, 2LighterLife UK Limited, Harlow, Essex, UK Background: Polycystic ovary syndrome (PCOS affects between 2% and 26% of reproductive-age women in the UK, and accounts for up to 75% of anovulatory infertility. The major symptoms include ovarian disruption, hyperandrogenism, insulin resistance, and polycystic ovaries. Interestingly, at least half of the women with PCOS are obese, with the excess weight playing a pathogenic role in the development and progress of the syndrome. The first-line treatment option for overweight/obese women with PCOS is diet and lifestyle interventions; however, optimal dietary guidelines are missing. Although many different dietary approaches have been investigated, data on the effectiveness of very low-calorie diets on PCOS are very limited. Materials and methods: The aim of this paper was to investigate how overweight/obese women with PCOS responded to LighterLife Total, a commercial very low-calorie diet, in conjunction with group behavioral change sessions when compared to women without PCOS (non-PCOS. Results: PCOS (n=508 and non-PCOS (n=508 participants were matched for age (age ±1 unit and body mass index (body mass index ±1 unit. A 12-week completers analysis showed that the total weight loss did not differ significantly between PCOS (n=137 and non-PCOS participants (n=137 (–18.5±6.6 kg vs –19.4±5.7 kg, P=0.190. Similarly, the percentage of weight loss achieved by both groups was not significantly different (PCOS 17.1%±5.6% vs non-PCOS 18.2%±4.4%, P=0.08. Conclusion: Overall, LighterLife Total could be an effective weight-loss strategy in overweight/obese women with PCOS. However, further investigations are needed to achieve a thorough way of understanding the physiology of weight

  2. Effect of weight loss on adipokine levels in obese patients

    Directory of Open Access Journals (Sweden)

    Hession M

    2011-08-01

    Full Text Available Catherine Rolland, Michelle Hession, Iain BroomCentre for Obesity Research and Epidemiology, Robert Gordon University, Aberdeen, Scotland, UKBackground: Adipose tissue functions as an endocrine organ by releasing adipokines which have important roles in the regulation of inflammation and insulin sensitivity. Although there is evidence of improvement in circulating levels of adipokines with weight loss, few studies relate such changes to specific diets. We investigated the effects of weight loss achieved by two different diets on circulating adipokine levels in obese individuals.Methods: A total of 120 obese patients (body mass index ≥ 35 kg/m2 underwent a three-month screening period on a low-fat, reduced-calorie diet. Patients failing to achieve a 5% weight loss using this approach were randomly allocated to either a low carbohydrate/high protein diet (n = 17 or to a commercial very low calorie diet (LighterLife®, n = 14 for a period of nine months.Results: At nine months, a significant weight loss was only maintained for LighterLife® (−32.3 ± 22.7 kg, P < 0.0001 but not on the low carbohydrate/high protein diet. Changes in adiponectin (15.8 ± 17.1 ng/mL versus −0.8 ± 6.2 ng/mL, P = 0.003 and leptin (−17.6 ± 24.3 ng/mL versus −3.0 ± 9.2 ng/mL, P = 0.049 at nine months were significantly greater for LighterLife® than for the low carbohydrate/high protein diet, which may reflect greater weight loss and decrease in fat mass. Changes in tumor necrosis factor-alpha, interleukin-6, and plasminogen activator inhibitor type 1 did not differ significantly between the dietary interventions at nine months.Conclusion: A significant weight loss of 23.8% from baseline weight was observed using a very low calorie diet and resulted in significant improvements in circulating levels of leptin, plasminogen activator inhibitor type 1, and adiponectin, which are likely to be due to weight loss and not macronutrient intake.Keywords: weight loss

  3. SPECTRAL SMILE CORRECTION IN CRISM HYPERSPECTRAL IMAGES

    Science.gov (United States)

    Ceamanos, X.; Doute, S.

    2009-12-01

    The Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) is affected by a common artifact in "push-broom" sensors, the so-called "spectral smile". As a consequence, both central wavelength and spectral width of the spectral response vary along the across-track dimension, thus giving rise to a shifting and smoothing of spectra (see Fig. 1 (left)). In fact, both effects are greater for spectra on the edges, while they are minimum for data acquired by central detectors, the so-called "sweet spot". The prior artifacts become particularly critical for Martian observations which contain steep spectra such as CO2 ice-rich polar images. Fig. 1 (right) shows the horizontal brightness gradient which appears in every band corresponding to a steep portion of spectra. The correction of CRISM spectral smile is addressed using a two-step method which aims at modifying data sensibly in order to mimic the optimal CRISM response. First, all spectra, which are previously interpolated by cubic splines, are resampled to the "sweet spot" wavelengths in order to overcome the spectra shift. Secondly, the non-uniform spectral width is overcome by mimicking an increase of spectral resolution thanks to a spectral sharpening. In order to minimize noise, only bands particularly suffering from smile are selected. First, bands corresponding to the outliers of the Minimum Noise Transformation (MNF) eigenvector, which corresponds to the MNF band related to smile (MNF-smile), are selected. Then, a spectral neighborhood Θi, which takes into account the local spectral convexity or concavity, is defined for every selected band in order to maximize spectral shape preservation. The proposed sharpening technique takes into account both the instrument parameters and the observed spectra. First, every reflectance value belonging to a Θi is reevaluated by a sharpening which depends on a ratio of the spectral width of the current detector and the "sweet spot" one. Then, the optimal degree of

  4. A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

    Directory of Open Access Journals (Sweden)

    Kuhn David N

    2011-08-01

    Full Text Available Abstract Background The fermented dried seeds of Theobroma cacao (cacao tree are the main ingredient in chocolate. World cocoa production was estimated to be 3 million tons in 2010 with an annual estimated average growth rate of 2.2%. The cacao bean production industry is currently under threat from a rise in fungal diseases including black pod, frosty pod, and witches' broom. In order to address these issues, genome-sequencing efforts have been initiated recently to facilitate identification of genetic markers and genes that could be utilized to accelerate the release of robust T. cacao cultivars. However, problems inherent with assembly and resolution of distal regions of complex eukaryotic genomes, such as gaps, chimeric joins, and unresolvable repeat-induced compressions, have been unavoidably encountered with the sequencing strategies selected. Results Here, we describe the construction of a BAC-based integrated genetic-physical map of the T. cacao cultivar Matina 1-6 which is designed to augment and enhance these sequencing efforts. Three BAC libraries, each comprised of 10× coverage, were constructed and fingerprinted. 230 genetic markers from a high-resolution genetic recombination map and 96 Arabidopsis-derived conserved ortholog set (COS II markers were anchored using pooled overgo hybridization. A dense tile path consisting of 29,383 BACs was selected and end-sequenced. The physical map consists of 154 contigs and 4,268 singletons. Forty-nine contigs are genetically anchored and ordered to chromosomes for a total span of 307.2 Mbp. The unanchored contigs (105 span 67.4 Mbp and therefore the estimated genome size of T. cacao is 374.6 Mbp. A comparative analysis with A. thaliana, V. vinifera, and P. trichocarpa suggests that comparisons of the genome assemblies of these distantly related species could provide insights into genome structure, evolutionary history, conservation of functional sites, and improvements in physical map

  5. The detection of heterozygous familial hypercholesterolemia in Ireland.

    LENUS (Irish Health Repository)

    O'Kane, Maurice J

    2012-05-01

    Heterozygous familial hypercholesterolemia (HeFH) is an autosomal dominant condition with a population prevalence of 1 in 500, and is associated with significant cardiovascular morbidity and mortality. It may be caused by mutations in the low-density lipoprotein (LDL) receptor, apolipoprotein B100 (Apo B100), or proprotein convertase subtilisin\\/kexin type 9 (PCSK9) genes, with over 1,000 causative mutations described. Statin therapy in HeFH is considered effective and safe. Audit data suggest that approximately 80% of the putative HeFH population remains unidentified and, therefore, there is a need to develop a strategy for the identification of affected individuals so that early lipid-lowering treatment may be offered. There is good evidence showing the effectiveness and acceptability of HeFH screening programs in Europe. The authors describe a protocol for an all island approach to HeFH detection in the Republic of Ireland\\/Northern Ireland. Index cases will be identified by opportunistic screening using the Simon Broome, or Make Early Diagnosis to Prevent Early Death (MedPed) and World Health Organization (WHO) criteria. Patients identified as "definite," "probable," or "possible" HeFH criteria will be offered genetic testing. The authors expect causative mutations to be identified in approximately 80% of patients with "definite" HeFH but in only approximately 20% of patients with "possible" HeFH. Cascade screening will be undertaken in first-degree relatives of the index case using genetic testing (where a causative mutation has been identified), or otherwise using LDL cholesterol concentration. The establishment of a HeFH screening program on an all-island basis will require: expansion of the existing molecular genetics diagnostic services, the establishment of a cohort of nurses\\/genetic counselors, a HeFH database to support cascade testing, the development of a network of lipid clinics (in a primary or secondary care setting), and an educational

  6. Volcanic Plume Elevation Model Derived From Landsat 8: examples on Holuhraun (Iceland) and Mount Etna (Italy)

    Science.gov (United States)

    de Michele, Marcello; Raucoules, Daniel; Arason, Þórður; Spinetti, Claudia; Corradini, Stefano; Merucci, Luca

    2016-04-01

    . We focus on the Holuhraun 2014 fissure eruption (Iceland) and on Mount Etna (Italy) 2013 episode. We validate our measurements against ground based measurements. The method has potential for detailed high resolution routine measurements of volcanic plume height/velocity. The method can be applied both to other multi focal plane modules push broom sensors (such as the ESA Sentinel 2) and potentially to other push-broom systems such as the CNES SPOT family and Pléiades.

  7. Incidência de pragas e doenças em agroecossistemas de café orgânico de agricultores familiares em Poço Fundo-MG Incidence of plagues and diseases in agroecossystems of organic coffee of familiar farmers in Poço Fundo-MG

    Directory of Open Access Journals (Sweden)

    Márcia Martins

    2004-12-01

    Full Text Available Objetivando-se determinar a incidência de pragas Leucoptera coffeella (GUÉRIN-MENÉVILLE, 1842 e Hypothenemus hampei (FERRARI, 1867 e doenças Hemileia vastatrix (BERK e BROOME, 1869 e Cercospora coffeicola (BERK e CURTIS, 1880, durante o período de janeiro de 2001 a dezembro de 2002, foram selecionados três agroecossistemas com produção de café orgânico conduzidos por agricultores familiares do município de Poço Fundo-MG. O agroecossistema I possui 2.200 pés da cultivar 'Catuaí Vermelho' em espaçamento 2,5 x 1,3 m (0,72 ha. O agroecossistema II possui 2.000 pés ('Catuaí Vermelho' em espaçamento 2,8 x 1,0 m (0,56 ha. O agroecossistema III possui 1.100 pés ('Icatu Amarelo' em espaçamento 3,0 x 0,9 m (0,36 ha. A determinação da incidência de L. coffeella, C. coffeicola e H. vastatrix foi realizada mediante levantamentos mensais. A determinação da infecção por C. coffeicola em frutos foi realizada nos meses de abril, maio e junho de 2001 e 2002. O levantamento da infestação por H. hampei foi realizado nos meses de janeiro a junho/julho de cada ano. Determinou-se que a infestação por L. coffeella ultrapassou 20% no terço superior (principalmente no período seco. A infestação por H. hampei atingiu o nível de dano somente no agroecossistema I, em 2001, e no agroecossistema III, em 2002. A infecção por H. vastatrix no agroecossistema III não atingiu nível de dano em conseqüência da tolerância da cultivar ('Icatu' à infecção por esse fungo; porém, nos agroecossistemas I e II ('Catuaí Vermelho', a infecção na lavoura ultrapassou o nível de 10% (principalmente no período seco. A infecção por C. coffeicola em folhas e frutos atingiu níveis elevados (período seco. A produtividade do agroecossistema I, em 2001, foi de 510 Kg ha-1 e, em 2002, de 2.340 Kg ha-1; no agroecossistema II, em 2001, foi de 420 Kg ha-1 e, em 2002, de 1.290 Kg ha-1; e, no agroecossistema III, foi praticamente zero, em 2001, e em

  8. Hydraulic characterization of " Furcraea andina

    Science.gov (United States)

    Rivera-Velasquez, M. F.; Fallico, C.; Molinari, A.; Santillan, P.; Salazar, M.

    2012-04-01

    constant head we repeated the test for three different rate of fiber compaction within the flow cell, corresponding to three different densities (146 kg/m3, 200 kg/m3 and 240 kg/m3). We observed that with increasing density of the fibers there is an increase of hydraulic conductivity. The importance of the experimental results on permeability acquires greater relevance when compared to the values of hydraulic conductivity already known from the literature for different soils types. In this study, special attention has been given to the value of hydraulic conductivity of this fiber, considering that in the framework of groundwater remediation strategies if the hydraulic conductivity in the barrier is lower than that of the surrounding aquifer, the plume may change its natural pathway, bypassing the barrier and veering towards larger hydraulic conductivity. Reference • Lee, B. G. and Rowell, R. M.: Removal of heavy metal ions from aqueous solutions using lignocellulosic fibers, J. Natural Fibers, 1, 97-108, 2004. • Troisi, S., Fallico, C., Straface, S., and Mazzuca, L.: Biodreni per la bonifica di siti contaminati realizzati con fibre naturali liberiane ad elevato sviluppo superficiale. Brevetto dell'Università della Calabria (n.: CS2008A00018), 2008. • C. Fallico, S. Troisi, A. Molinari, and M. F. Rivera.: Characterization of broom fibers for PRB in the remediation of aquifers contaminated by heavy metals, Biogeosciences journal , 7, 2545-2556, 2010

  9. Portuguese Familial Hypercholesterolemia Study: presentation of the study and preliminary results.

    Science.gov (United States)

    Bourbon, Mafalda; Rato, Quitéria

    2006-11-01

    Familial hypercholesterolemia (FH) is an autosomal dominant genetic disorder caused, in the majority of cases, by a partial or total lack of functional low density lipoprotein receptors (LDLR). Mutations in the LDLR gene lead to increased plasma cholesterol levels, resulting in cholesterol deposition in the arteries, thereby increasing the risk of premature coronary heart disease. The homozygous form of FH is rare but heterozygous FH is common, although underdiagnosed in many populations, including the Portuguese. In 1999 the Portuguese Familial Hypercholesterolemia Study was begun at the National Institute of Health. The aim of the Portuguese Familial H ypercholesterolemia Study is to perform an epidemiological study to determine the prevalence and distribution of FH in Portugal and to better understand the pathophysiology of coronary heart disease in these patients. The aim of the present work is to present the study's criteria and organization as well as its preliminary results. The study population consists of individuals of both sexes and all ages with a clinical diagnosis of FH, with biochemical and molecular characterization being performed. The clinical criteria used for the diagnosis of FH were adapted from those of the Simon Broome Heart Research Trust. The study is organized in five stages: 1. selection of individuals with a clinical diagnosis of FH; 2. completion of a clinical questionnaire and declaration of informed consent; 3. collection of blood samples; 4. biochemical characterization; 5. molecular study of three genes associated with the FH phenotype: LDLR, apolipoprotein B (APOB) and proprotein convertase subtilisin/kexin type 9 (PCSK9). Between 1999 and June 2006 the LDLR gene and the APOB gene of 141 index cases (38 children and 103 adults) were studied. In 78 of these index cases (76 heterozygotes and two homozygotes) 50 different mutations in the LDLR gene were identified, and two unrelated individuals were found to have the ApoB3500 mutation

  10. Avaliação e seleção de progênies de cupuaçuzeiro (Theobroma grandiflorum, em Belém, Pará Evaluation and selection of Theobroma grandiflorum parents, in Belem, Para

    Directory of Open Access Journals (Sweden)

    Rafael Moysés Alves

    2010-03-01

    Full Text Available Este trabalho teve por objetivo a seleção entre e dentro de progênies de irmãos completos de cupuaçuzeiro. Foram avaliadas 21 progênies de irmãos completos, em dois experimentos, com cinco plantas por parcela. Os experimentos foram avaliados ao nível de indivíduos, em cada safra, para os caracteres: produção de frutos, polpa e semente, bem como resistência à vassoura-de-bruxa. Para efeito de seleção, também foi considerado o grau de parentesco das matrizes. As análises foram conduzidas via metodologia de modelos lineares mistos, como delineamento em blocos incompletos, desbalanceados com tratamentos comuns. Foram estimados os parâmetros genéticos e os valores genotípicos ajustados de progênies, bem como os valores genéticos aditivos e genotípicos individuais. Os resultados demonstraram que as progênies 12; 13; 18; 20; 21 e 24 tiveram os melhores desempenhos para as variáveis de produção. Entre elas, as progênies 12; 13 e 18 foram as que mais se destacaram. Foram selecionadas três matrizes da progênie 18, duas matrizes da progênie 12 e uma matriz de cada uma das progênies 13; 20 e 21. É possível concluir que essas matrizes, juntamente com materiais selecionados em outras áreas experimentais, apresentam potencial para compor um pomar de sementes clonais, estabelecido em lote isolado de outros plantios, onde será produzida uma população melhorada de primeiro ciclo que se constituirá na nova cultivar de cupuaçuzeiro.This paper had as objective the selection among and within full sib families of Theobroma grandiflorum. A total of 21 full sibs progenies were appraised, in two experiments, with five plants for plot. The experiments were appraised at the individuals' level, in each crop, for the traits: production of fruits, pulp and seed and resistance to witch's broom disease. The degree of genetic relationship of the candidates was also considered. The analyses were performed through the methodology of mixed

  11. Photometric Lambert Correction for Global Mosaicking of HRSC Data

    Science.gov (United States)

    Walter, Sebastian; Michael, Greg; van Gasselt, Stephan; Kneissl, Thomas

    2015-04-01

    The High Resolution Stereo Camera (HRSC) is a push-broom image sensor onboard Mars Express recording the Martian surface in 3D and color. Being in orbit since 2004, the camera has obtained over 3,600 panchromatic image sequences covering about 70% of the planet's surface at 10-20 m/pixel. The composition of an homogenous global mosaic is a major challenge due to the strong elliptical and highly irregular orbit of the spacecraft, which often results in large variations of illumination and atmospheric conditions between individual images. For the purpose of a global mosaic in the full Nadir resolution of 12.5 m per pixel we present a first-order systematic photometric correction for the individual image sequences based on a Lambertian reflection model. During the radiometric calibration of the HRSC data, values for the reflectance scaling factor and the reflectance offset are added to the individual image labels. These parameters can be used for a linear transformation from the original DN values into spectral reflectance values. The spectral reflectance varies with the solar incidence angle, topography (changing the local incidence angle and therefore adding an exta geometry factor for each ground pixel), the bi-directional reflectance distribution function (BRDF) of the surface, and atmospheric effects. Mosaicking the spectral values together as images sometimes shows large brightness differences. One major contributor to the brightness differences between two images is the differing solar geometry due to the varying time of day when the individual images were obtained. This variation causes two images of the same or adjacent areas to have different image brightnesses. As a first-order correction for the varying illumination conditions and resulting brightness variations, the images are corrected for the solar incidence angle by assuming an ideal diffusely reflecting behaviour of the surface. This correction requires the calculation of the solar geometry for each

  12. TROPOMI, the Sentinel 5 precursor instrument for air quality and climate observations: status of the current design

    Science.gov (United States)

    Voors, Robert; de Vries, Johan; Bhatti, Ianjit S.; Lobb, Dan; Wood, Trevor; van der Valk, Nick; Aben, Ilse; Veefkind, Pepijn

    2017-11-01

    TROPOMI, the Tropospheric Monitoring Instrument, is a passive UV-VIS-NIR-SWIR trace gas spectrograph in the line of SCIAMACHY (2002) and OMI (2004), instruments with the Netherlands in a leading role. Both instruments are very successful and remained operational long after their nominal life time. TROPOMI is the next step, scheduled for launch in 2015. It combines the broad wavelength range from SCIAMACHY from UV to SWIR and the broad viewing angle push-broom concept from OMI, which makes daily global coverage in combination with good spatial resolution possible. Using spectral bands from 270-500nm (UV-VIS) 675-775nm (NIR) and 2305-2385nm (SWIR) at moderate resolution (0.25 to 0.6nm) TROPOMI will measure O3, NO2, SO2, BrO, HCHO and H2O tropospheric columns from the UV-VIS-NIR wavelength range and CO and CH4 tropospheric columns from the SWIR wavelength range. Cloud information will be derived primarily from the O2A band in the NIR. This will help, together with the aerosol information, in constraining the light path of backscattered solar radiation. Methane (CH4), CO2 and Carbon monoxide (CO) are the key gases of the global carbon cycle. Of these, Methane is by far the least understood in terms of its sources and is most difficult to predict its future trend. Global space observations are needed to inform atmospheric models. The SWIR channel of TROPOMI is designed to achieve the spectral, spatial and SNR resolution required for this task. TROPOMI will yield an improved accuracy of the tropospheric products compared to the instruments currently in orbit. TROPOMI will take a major step forward in spatial resolution and sensitivity. The nominal observations are at 7 x 7 km2 at nadir and the signal-to-noises are sufficient for trace gas retrieval even at very low albedos (down to 2%). This spatial resolution allows observation of air quality at sub-city level and the high signal-to-noises means that the instrument can perform useful measurements in the darkest

  13. Phase 1 Development Report for the SESSA Toolkit.

    Energy Technology Data Exchange (ETDEWEB)

    Knowlton, Robert G.; Melton, Brad J; Anderson, Robert J.

    2014-09-01

    The Site Exploitation System for Situational Awareness ( SESSA ) tool kit , developed by Sandia National Laboratories (SNL) , is a comprehensive de cision support system for crime scene data acquisition and Sensitive Site Exploitation (SSE). SESSA is an outgrowth of another SNL developed decision support system , the Building R estoration Operations Optimization Model (BROOM), a hardware/software solution for data acquisition, data management, and data analysis. SESSA was designed to meet forensic crime scene needs as defined by the DoD's Military Criminal Investigation Organiza tion (MCIO) . SESSA is a very comprehensive toolki t with a considerable amount of database information managed through a Microsoft SQL (Structured Query Language) database engine, a Geographical Information System (GIS) engine that provides comprehensive m apping capabilities, as well as a an intuitive Graphical User Interface (GUI) . An electronic sketch pad module is included. The system also has the ability to efficiently generate necessary forms for forensic crime scene investigations (e.g., evidence submittal, laboratory requests, and scene notes). SESSA allows the user to capture photos on site, and can read and generate ba rcode labels that limit transcription errors. SESSA runs on PC computers running Windows 7, but is optimized for touch - screen tablet computers running Windows for ease of use at crime scenes and on SSE deployments. A prototype system for 3 - dimensional (3 D) mapping and measur e ments was also developed to complement the SESSA software. The mapping system employs a visual/ depth sensor that captures data to create 3D visualizations of an interior space and to make distance measurements with centimeter - level a ccuracy. Output of this 3D Model Builder module provides a virtual 3D %22walk - through%22 of a crime scene. The 3D mapping system is much less expensive and easier to use than competitive systems. This document covers the basic installation and

  14. Immediate changes in topsoil chemical properties after controlled shrubland burning in the Central Pyrenees

    Science.gov (United States)

    Zufiaurre-Galarza, Raquel; Fernández Campos, Marta; Badía-Villas, David; María Armas-Herrera, Cecilia; Martí-Dalmau, Clara; Girona-García, Antonio

    2016-04-01

    Prescribed fire has recently been adopted as an encroachment-fighting strategy in the Central Pyrenees. Despite relatively large information on wildfire impacts on soil, there is little information on prescribed fire effects, especially in mountain ecosystems (Shakesby et al, 2015). Fire effects are noticeable in the topsoil, particularly in relation to soil organic matter and nutrient contents and quality (Alexis et al, 2012). These components change with time after fire and at the scale of the upper few centimetres of mineral soil (Badía et al, 2014). The aim of this study is to evaluate the immediate effects of prescribed shrubland burning on soil's nutrients and organic matter content to detect changes at cm-scale, trying to differentiate the heat shock from the subsequent incorporation of ash and charcoal. The study area, densely covered with spiny broom (Echinospartum horridum), is located in Tella (Central Pyrenees, NE Spain) at 1900 meters above sea level. Three sites were sampled before burning and immediately after burning just in its adjacent side. The soils belong to the WRB unit Leptic Eutric Cambisol, Soil samples were collected separating carefully the organic layers (litter in unburned soils and ashes and fire-altered organic residues in burned soils) and the mineral horizon at 0-1, 1-2 and 2-3 cm depths. Soil samples were air-dried and sieved to 2 mm. Soil organic C (by the wet oxidation method), total N (Kjeldahl method), water-soluble ions (Ca2+, Mg2+, Na+, K+, SO4=, NO3- and NH4+), exchangeable ions (Ca2+, Mg2+, K+, Na+, Fe3+ and Mn2+), total and available P, pH (1:5) and the electrical conductivity (in a 1:10 soil-to-water ratio) were measured. Immediately after the controlled fire, soil organic carbon content on burned topsoil decreases significantly within 0-3 cm of soil depth studied while total N decrease was not significant. Moreover, only a slight increase of the electrical conductivity, water-soluble ions and exchangeable ions was

  15. Levantamento etnobotânico de plantas medicinais na cidade de Ipameri - GO Ethnobotanical survey of medicinal plants in Ipameri City - Goiás State

    Directory of Open Access Journals (Sweden)

    M.R. Zucchi

    2013-01-01

    of these plants; and to diagnose the gender profile and the age and wage ranges of users. Thus, structured interviews were conducted with 200 families in the city and plants were collected for their correct identification. The material was herborized, identified and deposited in the Herbarium of "Universidade Estadual de Goiás" (HUEG. Of the 200 families interviewed, 75 said they did not make use of plants for medicinal purposes (37.5%, while 125 said they do use them (62.5%. The latter group reported the 35 most used species: "hortelã-rasteira" (Mentha x villosa L., "boldo-sete-dores" (Plectranthus barbatus Andrews., lemon grass (Cymbopogon citratus (DC. Stapf., "quebra-pedra" (Phyllanthus niruri L., chamomile (Chamomilla recutita (L. Rauschert., pennyroyal (Mentha pulegium L., guaco (Mikania glomerata Spreng., mentrasto (Ageratum conyzoides L., clove basil (Ocimum gratissimum L., wormwood (Artemisia canphorata Vill., balm (Eysenhardtia platycarpa Mich., broom (Baccharis trimera (Less. DC., fennel (Foeniculum vulgare Mill., aloe (Aloe vera L. and mallow (Althaea officinalis L.. All consumer families (100% stated to prefer plants grown organically, to select the plants based on their good appearance (68% families and to eat them in natura (unprocessed, 100%. The use of medicinal plants in Ipameri is independent of gender (54% womem and 46% men and extends to several age and socioeconomic ranges, configuring thus a good consumer market.

  16. ANALISIS BUTIR SOAPENGELOLAAN ARSIP INAKTIF DALAM UPAYA MENDUKUNG LAYANAN INFORMASI DI KANTOR ARSIP DAN PERPUSTAKAAN DAERAH KABUPATEN PURWOREJOL MATA PELAJARAN PENGANTAR ADMINISTRASI PERKANTORAN

    Directory of Open Access Journals (Sweden)

    Nita Rahmawati

    2016-02-01

    collected observation, interview, and documentation. The procedure of the research were pre-court stage, field work stage and data analysis stage. The data were analyzied by data collection, data reduction, data presentation, and drawing conclusions.The result of the study showed that the archives management include the record, control and distribution of archive, archival storage, archive maintenance, archive monitoring, archive removal and destruction. The problem of the study is there are still archives that accumulate in the archives storage depos space, there is no of sanctions for borrowers who are late return.Based on the result on this study it can be concluded that the recording archive through archive complete, control and distribution of the data received, date of letter, initials of the recipient. System archive storage that is used system chronological (date, maintenance with cleaning every corner of the archive room either with a duster or broom and give camphor in the shelf filling also coat archive with cover paper, removal and destruction of archive conducted by periodic or once a year. Thus, it is recommended: 1 optimize the storage depot space that archive are still stacked and unprocessed, 2 give sanction the borrowers that return the archive not in time

  17. MODEL PENELITIAN HUBUNGAN POLA PERMUKIMAN DAN KONFLIK ANTAR ETNIK

    Directory of Open Access Journals (Sweden)

    Emilya Kalsum

    2015-01-01

    that the integration process cannot occur. This study is to create a research model that can be used to investigate the effect of the settlement pattern to the conflict. It began with the definition of settlement pattern which includes three elements (place, content, network and seek the concept of social relationship. Social interaction process can produce two alternatives that are positive or negative. Negative alternative will bring inharmonic atmosphere which let to conflict. Inter-ethnic social relations also always accompanied by prejudices based on stereotype and ethnocentric attitudes; also due to different interests. Elements in settlement pattern was studied with its connection with social relations among its inhabitants. The approach taken was behavioral approach by the concept of behavior setting. The study resulted in a research model which combine settlement pattern as space for activity with social condition which is closely related to stereotype and ethnocentric attitudes as well as different interests REFERENCES Ahmadi, A. 1991. Masalah Carok Di Madura, Samsuri Ed., Madura II, Proyek Penelitian Madura, Depar-temen Pendidikan dan Kebudayaan RI. Malang: IKIP. Alqadrie, Syarif lbrahim. 1999. "Konflik Etnik di Ambon dan Sambas: Suatu Tinjauan Sosiologis”. Antropologi Indonesia. Th. XXIII, No. 58. Basset, Keith dan Short, John. 1978. Housing Residential Structure Alternatives Approaches' Ronhedge & Kegan Paul. London: Boston & Henley. Baum, Howeell S. 1998. “Ethical Behavior is Extraordinary. Behavior; It’s The Same As All Other Behavior. A Case Study In Community Planning”. APA Journal Autumn. Bernard, Jessie. 1973. Concencus, Conflict And Criminology. Unpub. PhD, School of Criminal Justice, State University Of N.Y at Albany. Broom, L., Selznick P. 1957. Sociology, Row. New York: Petterson & Co. Broom, L., Selznick P. dan Daroch, D.S. 1981. Sociology. New York: Harper International Edition. Cohen, Bruce J. 1992. Sosiologi Suatu Pengantar

  18. Gorduras de descarte e componentes externos do corpo de novilhos e vacas de descarte de diferentes grupos genéticos Trim fat and external components of the body of steers and cull cows from different genetic groups

    Directory of Open Access Journals (Sweden)

    Jonatan Cattelan

    2010-12-01

    cows, respectively. The animals were maintained at feedlot finished until they reached the finishing degree for slaughter. The experimental diet had a roughage concentrate ratio of 40:60 (dry matter basis, containing 14.2% of crude protein and 2,869kcal of digestible energy kg-1 dry matter. The experimental design was complete randomized in a 2x2 (two categories and two genetic groups factorial scheme. The slaughter weight (PAB (509.67 versus 414.50kg and the empty body weight (PCVZ (433.01 versus 355.27kg, respectively were higher for cows in relation to steers. When the components were expreseds in absolutes values and adjusted for PCVZ and PAB, cull cows showed higher inguinal fat, renal fat and internal total fat weights. When the components weights were adjusted for PAB e PCVZ, the steers showed higher head, foots, tail broom and total external components. The 5/8Ch 3/8Ne animals showed higher head absolute weight and ruminal fat in relation to PCVZ, while the 5/8Ne 3/8Ch showed higher rawhide weight in relation to PAB and PCVZ, and in relation to PAB higher total extern components weight. The carcass dressing percentage and non integrants body parts of carcass didn't show any correlation.

  19. Electromagnetic Field Effects on Production of Salicylic Acid and Phenylalanine ammonia lyase in Tobacco Infected with Potato Virus X (PVX

    Directory of Open Access Journals (Sweden)

    amin radmard titkanlo

    2018-02-01

    . If the treatment number 11, OD (2/85 and in pollution-free treatment that was an OD (0/35 was observed. The OD also in other treatments were not exposed between 2.00 to 2.46 were visible. The results showed that the treatment 11 (infected control actually infected treatment that has not been exposed, and treatment 8 is the most desirable treatment for a reduction in the OD, the difference in the OD are available 0/98. The results suggest that the electromagnetic field decreases the amount of OD in tobacco seedlings are infected with PVX. Researchers said electromagnetic field growth rate and the number of spores grown in three species are affected. In another study, it was found that the impact on dry and wet mycorrhiza. The electromagnetic field decreases witches' broom disease infected lemon trees that were probably due to the decline phytoplasmas in plant tissues. Another study on the antibacterial effects of electromagnetic fields on Serratia marcescens was conducted, which resulted in the inhibition of bacterial growth. The results of salicylic acid and PAL determine the tobacco crop treatments, there are significant differences in the level of 0/05. So that treatment (7 (50 mT, 60 min the highest salicylic acid and treatment 1 (control non-infected showed the lowest rates. Also, reviews PAL treatment and treatment (7 most (1 (see non-polluting had the lowest. In fact, with the arrival of the pathogen to the host salicylic acid and phenylalanine ammonia will increase. But the electromagnetic stress in some treatments of both traits, from infected plants, should take over. However, some treatments less than 11 treatments (infection control is (but treatment Salicylic acid (4 was less than healthy plant. Interestingly, in both treatments was the highest for both traits in treatments of 7, 6 and 5, respectively. Pre-plant treatments with salicylic acid caused a significant increase in the PAL activity, which indicates the role of these enzymes in plant defense

  20. Some aspects of chicken behavior and welfare

    Directory of Open Access Journals (Sweden)

    LS Costa

    2012-09-01

    with the European Union's (EU guidelines for animal protein production, Brazilian poultry production needs to undergo a process of adaptation. In May, 2007, the EU Commission established its new guidelines for animal welfare in poultry production, pressured by consumer demand. In the EU, there is a growing concern among consumers as to how poultry are reared and slaughtered. European consumers are in the fore front of the demand of high quality products produced with under better welfare conditions, and have spread this concern throughout the world. Beaumont et al. (2010 mentioned that European consumers frequently perceive that standard commercial poultry production has poor animal welfare practices. According to Nääs et al. (2008, Brazilian poultry production today needs to find a balance between cruelty and productivity. In fact, ensuring animal welfare may provide better financial results, as it increases the producer's profit margins and allows maintaining Brazilian chicken export quotas to the EU. França (2008 noted that biological studies that define ethical limits and guidelines for poultry production foster the development of new production practices that may ensure good product quality and productivity without putting bird welfare at risk. Gonyou (1994 states that, when animal welfare started to be studied, the only behavioral factors considered were those related to feeding and reproduction. These first studies used as indicators of animal welfare reduced life expectancy, impaired growth, impaired reproduction, body damage, disease, immunosuppression, adrenal activity, behavior anomalies, and self-narcotization (Broom, 1991. However, current studies evaluate additional indicators, such as natural behaviors, behavioral needs, preferences, behavioral problems, emotional state, cognitive abilities, etc. In the field of ethology, the expression of natural behavior is a frequently used tool used to estimate the welfare of poultry destined to human consumption

  1. Strategies for satellite-based monitoring of CO2 from distributed area and point sources

    Science.gov (United States)

    Schwandner, Florian M.; Miller, Charles E.; Duren, Riley M.; Natraj, Vijay; Eldering, Annmarie; Gunson, Michael R.; Crisp, David

    2014-05-01

    and sensor provides the full range of temporal sampling needed to characterize distributed area and point source emissions. For instance, point source emission patterns will vary with source strength, wind speed and direction. Because wind speed, direction and other environmental factors change rapidly, short term variabilities should be sampled. For detailed target selection and pointing verification, important lessons have already been learned and strategies devised during JAXA's GOSAT mission (Schwandner et al, 2013). The fact that competing spatial and temporal requirements drive satellite remote sensing sampling strategies dictates a systematic, multi-factor consideration of potential solutions. Factors to consider include vista, revisit frequency, integration times, spatial resolution, and spatial coverage. No single satellite-based remote sensing solution can address this problem for all scales. It is therefore of paramount importance for the international community to develop and maintain a constellation of atmospheric CO2 monitoring satellites that complement each other in their temporal and spatial observation capabilities: Polar sun-synchronous orbits (fixed local solar time, no diurnal information) with agile pointing allow global sampling of known distributed area and point sources like megacities, power plants and volcanoes with daily to weekly temporal revisits and moderate to high spatial resolution. Extensive targeting of distributed area and point sources comes at the expense of reduced mapping or spatial coverage, and the important contextual information that comes with large-scale contiguous spatial sampling. Polar sun-synchronous orbits with push-broom swath-mapping but limited pointing agility may allow mapping of individual source plumes and their spatial variability, but will depend on fortuitous environmental conditions during the observing period. These solutions typically have longer times between revisits, limiting their ability to resolve

  2. Anatomía y usos de las hojas maduras de tres especies de Sabal (Arecaceae de la Península de Yucatán, México

    Directory of Open Access Journals (Sweden)

    Martha Pérez

    2003-06-01

    superficie abaxial sólo están los haces de fibras y hacia la superficie adaxial hay haces vasculares y haces fibrosos. Las fibras, en las tres especies son alargadas, de extremos aguzados, no ramificadas ni septadas. En los haces vasculares se observan de uno a tres vasos amplios del metaxilema, siendo S. yapa la que los tiene de mayor diámetro. Los haces vasculares están rodeados por gruesas vainas de fibras. El pecíolo tiene una estructura anatómica similar a la de la lámina y se caracteriza por los numerosos haces vasculares y haces de fibras esparcidos en el tejido parenquimatoso. La estructura histológica de lámina y pecíolo reflejan cualidades de resistencia y flexibilidad que las hacen adecuadas para ser utilizadas en el techado de viviendas rurales y otras construcciones.This paper describes the leaf anatomy of Sabal mauritiiformis (Karst. Griseb. & H. Wendl., Sabal mexicana Mart. and Sabal yapa Wright ex Becc., three of the four most representative species of the Yucatán Península, in Mexico. These species are locally used: in the roofing of traditional homes, as food (fruits and apical buds, and in the production of hats, brooms and handicrafts. Leaf samples were collected in secondary growth of lower montane rainforest in the state of Quintana Roo and in two home gardens in the state of Yucatán. Herbarium samples were obtained, and samples of blade and petiole were fixed in formaline-acetic acid-alcohol. Cross incisions were made on the blade and petiole, and were dyed with safranin and toluidine blue O.The results show that S. mauritiiformis and S. yapa are morphologically alike: both are tall, slim palm trees; the leaf in S. mauritiiformis is a shorter palm-like structure compared with the other two species. The shape of the main nerve, as seen in cross section, is rectangular in the three species. The hastula in the three species is acuminate and adaxial. The foliar anatomic structure is similar in the three species, although there are some

  3. Low-density lipoprotein apheresis: an evidence-based analysis.

    Science.gov (United States)

    2007-01-01

    /L or 500-1000mg/dL). Homozygous FH patients are typically diagnosed in infancy, usually due to the presence of cholesterol deposits in the skin and tendons. The main complication of HMZ FH is supravalvular aortic stenosis, which is caused by cholesterol deposits on the aortic valve and in the ascending aorta. The average life expectancy of affected individuals is 23 to 25 years. In Ontario, it is estimated that there are 13 to 15 cases of HMZ FH. An Ontario clinical expert confirmed that 9 HMZ FH patients have been identified to date. There are 2 accepted clinical diagnostic criterion for the diagnosis of FH: the Simon Broome FH Register criteria from the United Kingdom and the Dutch Lipid Network criteria from the Netherlands. The criterion supplement cholesterol levels with clinical history, physical signs and family history. DNA-based-mutation-screening methods permit a definitive diagnosis of HTZ FH to be made. However, given that there are over 1000 identified mutations in the LDL receptor gene and that the detection rates of current techniques are low, genetic testing becomes problematic in countries with high genetic heterogeneity, such as Canada. The primary aim of treatment in both HTZ and HMZ FH is to reduce plasma LDL-C levels in order to reduce the risk of developing atherosclerosis and CAD. The first line of treatment is dietary intervention, however it alone is rarely sufficient for the treatment of FH patients. Patients are frequently treated with lipid-lowering drugs such as resins, fibrates, niacin, statins and cholesterol absorption-inhibiting drugs (ezetimibe). Most HTZ FH patients require a combination of drugs to achieve or approach target cholesterol levels. A small number of HTZ FH patients are refractory to treatment or intolerant to lipid-lowering medication. According to clinical experts, the prevalence of refractory HTZ FH in Ontario is between 1 to 5%. Using the mean of 3%, it is estimated that there are approximately 765 refractory HTZ FH

  4. Pesantren Dan Pengabdian Masyarakat (Studi Kasus Pondok Pesantren Dawar Boyolali

    Directory of Open Access Journals (Sweden)

    Rustam Ibrahim

    2016-06-01

    Full Text Available Abstract: When boarding schools are faced with community service, some of them are not willing to accept it. Survey of BPPM Maslakul Huda Islamic School, in collaboration with the P3M Jakarta concluded that three (25% of the 12 pesantrens in Central Java do not receive community service. It is an irony, because pesantren was born and raised from the public. One of pesantrens that was born from community service is PP DawarBoyolali. PP Dawar proved that pesantren had a great contribution to the community. This study wanted to uncover the devotion PP Dawar to community, both in religious and economic empowerment, as well as the main reason of PP Dawar in performing community service. The method used in this study was a qualitative research method using case study design. Based on the research, it was found that PP Dawar was a community-based boarding school which had done community services by performing routine religious activities such as routine verses recitation, recitals of Qur’an for the orphans, and also serving  the demand of societies that need Islamic teachers and religion teachers graduating from PP. DawarBoyolali. PP Dawar also helped the economy of the surrounding communities, by providing cheap labors, helping traditional broom and cracker home industry, and organizing donations to 500 orphans. The ideas or thoughts underlying PP Dawar’sdevotion are a sense of sincerity, an implementation on the religious science, a spirit of self-reliance, and a promotion for PP Dawar Boyolali itself. الملخص: عندما تُوجّه البسانترينات إلى وجود الخدمة الإجتماعية، كان بعضها لم يقبلها. دلّت الدراسة المسحية التي قام بها BPPM بسانترين "مسلك الهدى " بالاشتراك مع P3M جاكرتا على أن 3 أو (%25 من 12 بسانترين في أنحاء جاوة الوسطى لم تقبل الخدمة الإجتماعية. وهذا